Query 012521
Match_columns 461
No_of_seqs 183 out of 1908
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.8 3.5E-20 7.6E-25 170.2 -2.5 345 18-435 74-437 (483)
2 KOG2120 SCF ubiquitin ligase, 99.7 1.5E-18 3.3E-23 152.7 -1.5 165 16-206 98-271 (419)
3 smart00579 FBD domain in FBox 99.4 5.9E-13 1.3E-17 96.5 8.0 70 392-461 1-72 (72)
4 PF08387 FBD: FBD; InterPro: 99.1 1.7E-10 3.7E-15 76.6 5.1 44 390-433 8-51 (51)
5 PLN00113 leucine-rich repeat r 98.8 2.9E-09 6.3E-14 117.1 4.2 221 113-365 93-319 (968)
6 PF12937 F-box-like: F-box-lik 98.7 6.3E-09 1.4E-13 68.2 2.8 35 16-50 1-35 (47)
7 PLN00113 leucine-rich repeat r 98.7 1.3E-08 2.8E-13 112.0 3.9 104 113-229 164-271 (968)
8 KOG4194 Membrane glycoprotein 98.6 1.4E-08 3E-13 98.3 1.6 26 397-422 440-467 (873)
9 KOG4194 Membrane glycoprotein 98.5 9.9E-09 2.2E-13 99.3 -0.9 130 142-276 99-232 (873)
10 PLN03210 Resistant to P. syrin 98.5 9.9E-08 2.1E-12 105.9 5.4 64 135-202 602-666 (1153)
11 PLN03210 Resistant to P. syrin 98.3 5.6E-07 1.2E-11 100.0 6.5 110 135-254 578-691 (1153)
12 cd00116 LRR_RI Leucine-rich re 98.3 5.5E-08 1.2E-12 92.8 -1.7 13 190-202 78-90 (319)
13 PF00646 F-box: F-box domain; 98.3 1.4E-07 3.1E-12 62.1 0.4 37 16-52 3-39 (48)
14 KOG4341 F-box protein containi 98.3 4.1E-09 8.9E-14 98.0 -9.5 84 146-231 139-229 (483)
15 KOG3207 Beta-tubulin folding c 98.2 6.1E-08 1.3E-12 90.9 -4.0 208 143-365 119-337 (505)
16 smart00256 FBOX A Receptor for 98.2 9.9E-07 2.1E-11 55.8 1.9 34 19-52 1-34 (41)
17 cd00116 LRR_RI Leucine-rich re 98.1 4.4E-07 9.5E-12 86.6 -1.3 57 144-202 80-146 (319)
18 PRK15387 E3 ubiquitin-protein 98.0 8.1E-06 1.7E-10 85.2 6.6 101 135-257 214-315 (788)
19 KOG1909 Ran GTPase-activating 97.9 3.9E-06 8.5E-11 76.9 1.7 162 182-365 109-281 (382)
20 KOG2120 SCF ubiquitin ligase, 97.9 1.1E-06 2.5E-11 78.6 -2.9 72 289-365 303-374 (419)
21 KOG2982 Uncharacterized conser 97.8 1E-05 2.3E-10 72.5 2.5 204 145-365 45-260 (418)
22 PRK15370 E3 ubiquitin-protein 97.7 2.6E-05 5.7E-10 81.7 4.6 187 134-365 190-378 (754)
23 KOG0444 Cytoskeletal regulator 97.7 1.8E-07 4E-12 91.5 -11.3 208 133-365 91-302 (1255)
24 KOG0444 Cytoskeletal regulator 97.6 5.4E-07 1.2E-11 88.3 -10.0 64 295-364 169-232 (1255)
25 PRK15387 E3 ubiquitin-protein 97.6 0.00011 2.3E-09 77.0 5.8 31 144-177 241-271 (788)
26 KOG1947 Leucine rich repeat pr 97.5 3.2E-06 6.8E-11 85.6 -5.8 113 139-253 208-330 (482)
27 KOG3207 Beta-tubulin folding c 97.4 5.2E-05 1.1E-09 71.6 1.5 109 144-257 171-284 (505)
28 PRK15370 E3 ubiquitin-protein 97.2 0.00015 3.3E-09 76.1 2.2 59 299-365 367-426 (754)
29 KOG1947 Leucine rich repeat pr 97.2 2E-05 4.3E-10 79.8 -4.3 39 14-52 43-81 (482)
30 KOG0618 Serine/threonine phosp 97.2 1.3E-05 2.8E-10 82.4 -5.9 43 135-177 277-319 (1081)
31 PF14580 LRR_9: Leucine-rich r 97.1 4.5E-05 9.8E-10 65.0 -2.5 56 144-202 41-97 (175)
32 KOG1909 Ran GTPase-activating 97.0 6.1E-05 1.3E-09 69.3 -2.8 94 328-435 185-281 (382)
33 PF14580 LRR_9: Leucine-rich r 96.8 0.00039 8.5E-09 59.3 1.0 106 144-256 18-125 (175)
34 PF07723 LRR_2: Leucine Rich R 96.8 0.0014 3E-08 36.3 2.8 25 169-193 1-26 (26)
35 KOG3665 ZYG-1-like serine/thre 96.8 0.00036 7.9E-09 72.6 0.7 58 144-202 121-182 (699)
36 KOG1259 Nischarin, modulator o 96.7 0.00054 1.2E-08 61.9 0.5 215 165-419 211-450 (490)
37 KOG0472 Leucine-rich repeat pr 96.6 4.4E-05 9.6E-10 71.4 -7.0 106 322-435 429-539 (565)
38 PF13855 LRR_8: Leucine rich r 96.5 0.00094 2E-08 46.2 0.9 56 145-202 1-58 (61)
39 KOG0617 Ras suppressor protein 96.4 6.8E-05 1.5E-09 62.0 -6.3 60 140-202 28-88 (264)
40 KOG1259 Nischarin, modulator o 96.0 0.0044 9.5E-08 56.2 2.3 34 191-226 212-245 (490)
41 KOG3665 ZYG-1-like serine/thre 95.9 0.0027 5.9E-08 66.3 0.6 121 289-432 163-283 (699)
42 PF13855 LRR_8: Leucine rich r 95.8 0.0098 2.1E-07 41.0 3.1 44 133-177 12-58 (61)
43 PF12799 LRR_4: Leucine Rich r 95.5 0.0062 1.3E-07 38.8 1.2 31 146-177 2-33 (44)
44 KOG0618 Serine/threonine phosp 95.4 0.0025 5.3E-08 66.2 -1.6 66 134-202 80-146 (1081)
45 KOG1644 U2-associated snRNP A' 95.3 0.043 9.3E-07 47.1 5.6 59 143-202 62-122 (233)
46 KOG2982 Uncharacterized conser 94.1 0.025 5.5E-07 51.4 1.6 70 289-365 87-157 (418)
47 COG4886 Leucine-rich repeat (L 93.8 0.011 2.5E-07 58.1 -1.2 168 144-338 115-287 (394)
48 KOG0281 Beta-TrCP (transducin 93.5 0.026 5.6E-07 51.9 0.6 37 13-49 72-112 (499)
49 PLN03215 ascorbic acid mannose 93.5 0.039 8.4E-07 52.7 1.7 36 16-51 4-40 (373)
50 KOG0472 Leucine-rich repeat pr 93.5 0.0037 8E-08 58.9 -4.9 58 132-193 262-320 (565)
51 KOG4237 Extracellular matrix p 93.5 0.0084 1.8E-07 56.5 -2.7 44 133-177 78-124 (498)
52 PRK15386 type III secretion pr 93.4 0.13 2.8E-06 49.9 5.1 30 146-177 73-103 (426)
53 KOG2739 Leucine-rich acidic nu 93.1 0.026 5.6E-07 50.4 -0.0 106 144-252 42-151 (260)
54 COG5238 RNA1 Ran GTPase-activa 92.7 0.098 2.1E-06 47.1 2.9 162 182-365 109-283 (388)
55 KOG2997 F-box protein FBX9 [Ge 92.0 0.052 1.1E-06 49.6 0.4 36 13-48 104-144 (366)
56 PF12799 LRR_4: Leucine Rich r 91.6 0.11 2.4E-06 33.0 1.5 36 168-208 1-37 (44)
57 KOG2123 Uncharacterized conser 91.6 0.016 3.4E-07 52.2 -3.3 102 245-362 20-125 (388)
58 KOG2123 Uncharacterized conser 91.3 0.0033 7.1E-08 56.4 -7.8 89 237-334 34-123 (388)
59 KOG1859 Leucine-rich repeat pr 91.1 0.015 3.2E-07 59.2 -4.4 68 81-159 53-123 (1096)
60 PLN03150 hypothetical protein; 91.0 0.17 3.6E-06 53.0 3.0 81 146-231 419-503 (623)
61 PRK15386 type III secretion pr 90.1 0.36 7.8E-06 46.9 4.1 137 189-364 48-187 (426)
62 KOG4658 Apoptotic ATPase [Sign 88.6 0.28 6E-06 53.1 2.4 57 145-202 523-580 (889)
63 KOG0617 Ras suppressor protein 88.5 0.03 6.4E-07 46.7 -3.8 67 133-202 44-111 (264)
64 COG4886 Leucine-rich repeat (L 88.1 0.14 3E-06 50.4 -0.2 156 132-308 126-286 (394)
65 KOG1644 U2-associated snRNP A' 87.1 0.77 1.7E-05 39.7 3.7 65 295-365 60-124 (233)
66 PF13504 LRR_7: Leucine rich r 85.6 0.43 9.4E-06 23.3 0.9 15 145-159 1-15 (17)
67 KOG4658 Apoptotic ATPase [Sign 85.2 0.29 6.3E-06 52.9 0.3 103 143-254 543-652 (889)
68 smart00367 LRR_CC Leucine-rich 85.0 0.76 1.6E-05 25.2 1.8 23 167-189 1-24 (26)
69 KOG0274 Cdc4 and related F-box 84.0 0.41 8.9E-06 48.7 0.7 42 8-49 100-141 (537)
70 KOG3864 Uncharacterized conser 83.8 0.17 3.6E-06 43.6 -1.8 55 147-202 103-160 (221)
71 PLN03150 hypothetical protein; 81.9 0.76 1.6E-05 48.1 1.7 81 169-255 419-501 (623)
72 PF13013 F-box-like_2: F-box-l 81.5 0.81 1.8E-05 35.5 1.3 30 15-44 21-50 (109)
73 COG5238 RNA1 Ran GTPase-activa 79.6 2.2 4.8E-05 38.8 3.5 201 144-365 29-253 (388)
74 KOG4237 Extracellular matrix p 78.6 0.7 1.5E-05 44.1 0.2 63 137-202 265-331 (498)
75 KOG2739 Leucine-rich acidic nu 77.4 1.3 2.7E-05 39.9 1.4 46 321-366 58-103 (260)
76 PF00560 LRR_1: Leucine Rich R 76.2 1.8 3.9E-05 22.7 1.3 16 146-161 1-16 (22)
77 KOG0531 Protein phosphatase 1, 69.6 1.6 3.5E-05 43.2 0.2 101 143-254 93-196 (414)
78 PF13516 LRR_6: Leucine Rich r 61.3 4.2 9E-05 21.6 0.8 13 145-157 2-14 (24)
79 KOG3926 F-box proteins [Amino 58.6 3.3 7.1E-05 37.3 0.1 51 12-62 198-255 (332)
80 KOG3864 Uncharacterized conser 57.9 7.3 0.00016 33.9 2.0 39 326-365 149-187 (221)
81 KOG0531 Protein phosphatase 1, 55.1 3.7 8.1E-05 40.7 -0.2 82 141-229 114-197 (414)
82 PF09372 PRANC: PRANC domain; 45.3 13 0.00028 28.2 1.5 25 14-38 70-94 (97)
83 PF13306 LRR_5: Leucine rich r 44.6 30 0.00065 27.3 3.6 62 137-202 3-67 (129)
84 KOG1859 Leucine-rich repeat pr 43.9 7.9 0.00017 40.4 0.1 57 141-202 205-263 (1096)
85 smart00370 LRR Leucine-rich re 42.9 16 0.00036 19.6 1.3 18 145-162 2-19 (26)
86 smart00369 LRR_TYP Leucine-ric 42.9 16 0.00036 19.6 1.3 18 145-162 2-19 (26)
87 KOG4579 Leucine-rich repeat (L 39.1 8.2 0.00018 31.5 -0.5 56 144-202 52-109 (177)
88 KOG4408 Putative Mg2+ and Co2+ 35.0 11 0.00024 35.2 -0.4 39 16-54 8-46 (386)
89 KOG4579 Leucine-rich repeat (L 32.0 12 0.00026 30.6 -0.6 43 134-177 65-109 (177)
90 smart00368 LRR_RI Leucine rich 31.4 47 0.001 18.4 2.0 21 168-188 2-22 (28)
91 smart00364 LRR_BAC Leucine-ric 23.5 44 0.00096 18.4 0.8 19 145-163 2-20 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.75 E-value=3.5e-20 Score=170.16 Aligned_cols=345 Identities=16% Similarity=0.132 Sum_probs=220.0
Q ss_pred CCChHHHHHHHcCCCccchhhhcccchhhHHh------hcccceeeecCCCCCCcchHHHHHHHHHhccCCCCeeEEEEE
Q 012521 18 RLPDHLLCRILSCLPTEDAVRTCILSSRWRDL------WTSIHGLYFDGGNEKPRSWFLNFVERVLGLCQLKDIHNFHLR 91 (461)
Q Consensus 18 ~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~v~~~l~~~~~~~i~~l~l~ 91 (461)
.||+|++..|||+|+++.+++++++|+.|..+ |+++..++|..+. +.. .|..+. .+.+..+++++++
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv--~g~----VV~~~~-~Rcgg~lk~LSlr 146 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV--DGG----VVENMI-SRCGGFLKELSLR 146 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC--CCc----ceehHh-hhhcccccccccc
Confidence 49999999999999999999999999999864 7777666665443 111 122222 2223466666666
Q ss_pred EcccCcCCcccHHHHHHHHHhcCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeee-cc--CCCCccccC
Q 012521 92 SSTLREKDFSRVSEWICFAIQRNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIV-ID--IPGSGICFP 168 (461)
Q Consensus 92 ~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l-~~--~~~~~~~~~ 168 (461)
... .. ....+-.....|++++.|.+.+|.. ++ ...++..|+
T Consensus 147 G~r--~v----------------------------------~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~ 190 (483)
T KOG4341|consen 147 GCR--AV----------------------------------GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCR 190 (483)
T ss_pred ccc--cC----------------------------------CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcc
Confidence 444 11 1112222233488888888888763 22 112225688
Q ss_pred CccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecC---CCCeeEEEEEcCCcceEEEEEEeecCcccceeEEEecC
Q 012521 169 SLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHP---RDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTP 244 (461)
Q Consensus 169 ~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~---~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p 244 (461)
+|+.|+|.. ..+++..++.+..+||+|+.|++++ |+ ..+++.+.-.+..++.+...+|.....+....+.-.++
T Consensus 191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSw--c~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSW--CPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhcc--CchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 888888888 6667788888888899999999988 62 23344445555667777777776554333344444455
Q ss_pred CccEEEEeecccCc-e---E-eecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhh
Q 012521 245 NLEYLSIIANSLAY-F---V-LDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFV 319 (461)
Q Consensus 245 ~L~~L~~~~~~~~~-~---~-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~ 319 (461)
.+..+++..+...+ . . -..+..|+.+....+... .+..+.++.+.+++|+.|.+.++.. +++.
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~--------~d~~l~aLg~~~~~L~~l~l~~c~~----fsd~ 336 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI--------TDEVLWALGQHCHNLQVLELSGCQQ----FSDR 336 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC--------chHHHHHHhcCCCceEEEeccccch----hhhh
Confidence 55555533321110 0 0 011223333322222221 2267888999999999999998432 3333
Q ss_pred ccCCC-CCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCCCCcccccccccccCCccccccccce
Q 012521 320 LNNNL-PTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTLQDIVFEDLVCVEPECAPNCLSSCV 398 (461)
Q Consensus 320 ~~~~~-~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 398 (461)
.+..+ ..+..|+.|++..+.......+.++-.+||.||+|.++++.. ..+.+..... ...|...+|
T Consensus 337 ~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~-itD~gi~~l~------------~~~c~~~~l 403 (483)
T KOG4341|consen 337 GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL-ITDEGIRHLS------------SSSCSLEGL 403 (483)
T ss_pred hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh-hhhhhhhhhh------------hcccccccc
Confidence 33333 377889999999998866767999999999999999998873 2222111111 345778889
Q ss_pred EEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 399 EVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 399 ~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
.++++.+..... -+..++ +.++++||++.+...+
T Consensus 404 ~~lEL~n~p~i~--d~~Le~-l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 404 EVLELDNCPLIT--DATLEH-LSICRNLERIELIDCQ 437 (483)
T ss_pred ceeeecCCCCch--HHHHHH-HhhCcccceeeeechh
Confidence 999999988764 244444 4778899998887665
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-18 Score=152.72 Aligned_cols=165 Identities=25% Similarity=0.347 Sum_probs=113.7
Q ss_pred CCCCChHHHHHHHcCCCccchhhhcccchhhHHh------hcccceeeecCCCCCCcchHHHHHHHHHhccCCCCeeEEE
Q 012521 16 TSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDL------WTSIHGLYFDGGNEKPRSWFLNFVERVLGLCQLKDIHNFH 89 (461)
Q Consensus 16 ~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~v~~~l~~~~~~~i~~l~ 89 (461)
+..||||++..||+.|+.+++.+.+.|||||+++ |+. +++....+.+ +...+++. ..|..|+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p-----~~l~~l~~----rgV~v~R 165 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP-----DVLGRLLS----RGVIVFR 165 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh-----hHHHHHHh----CCeEEEE
Confidence 7789999999999999999999999999999974 655 4444333221 12233332 2366665
Q ss_pred EEEcccCcCCcccHHHHHHHHHhcCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCC--CCcccc
Q 012521 90 LRSSTLREKDFSRVSEWICFAIQRNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIP--GSGICF 167 (461)
Q Consensus 90 l~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~ 167 (461)
+.-.. .+...+... ....+..++++++.... .....+.-.+..|..|+.|+|.|..++++- .. +.-
T Consensus 166 lar~~---~~~prlae~-~~~frsRlq~lDLS~s~-------it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN 233 (419)
T KOG2120|consen 166 LARSF---MDQPRLAEH-FSPFRSRLQHLDLSNSV-------ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKN 233 (419)
T ss_pred cchhh---hcCchhhhh-hhhhhhhhHHhhcchhh-------eeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hcc
Confidence 55332 222222221 11234478999776655 233344444556999999999999997722 22 456
Q ss_pred CCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecC
Q 012521 168 PSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHP 206 (461)
Q Consensus 168 ~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~ 206 (461)
.+|+.|+|.. .-.+..+++-++++|..|.+|+|.+ |.
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsW--c~ 271 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSW--CF 271 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchH--hh
Confidence 8999999999 5556889999999999999999999 73
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.43 E-value=5.9e-13 Score=96.47 Aligned_cols=70 Identities=36% Similarity=0.707 Sum_probs=63.4
Q ss_pred cccccceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC--CCchHHHHHHHhcCCCCCCcceEEeC
Q 012521 392 NCLSSCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE--DAPEDNLRKEILMFPRGSKTCNIEFF 461 (461)
Q Consensus 392 ~~~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~--~~~~~~~~~~l~~~~r~s~~~~i~~~ 461 (461)
+|+.++|++|+|.+|.|..+|+++++|+++||+.||+|+|..+. .+....+.++|..++|||+.|+|.|+
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 37788999999999999999999999999999999999999876 33446788999999999999999985
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.09 E-value=1.7e-10 Score=76.59 Aligned_cols=44 Identities=41% Similarity=0.828 Sum_probs=42.3
Q ss_pred cccccccceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEEe
Q 012521 390 APNCLSSCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVGF 433 (461)
Q Consensus 390 ~~~~~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~ 433 (461)
.|+|+.++|+.|++.+|.|..+|+++++|+++||++||+|+|..
T Consensus 8 ~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 8 VPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 88999999999999999999999999999999999999999963
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.80 E-value=2.9e-09 Score=117.13 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=121.2
Q ss_pred cCccEEEEEEeecccccccceecccCCccc-CCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHh
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSIL-TCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFS 190 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~ 190 (461)
..++.|++.... ....+|..++ .+++|++|+|++|.+...... ..+++|++|+|.+ .+. ..+...+.
T Consensus 93 ~~L~~L~Ls~n~--------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~--~~~p~~~~ 161 (968)
T PLN00113 93 PYIQTINLSNNQ--------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLS--GEIPNDIG 161 (968)
T ss_pred CCCCEEECCCCc--------cCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCccc--ccCChHHh
Confidence 578888554432 2235777776 588899999988877542222 4678899999887 432 22333467
Q ss_pred cCCccCeEEEeeeecCCCCeeEEEE-EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc---eEeecCCC
Q 012521 191 SCPTLEELTIEGILHPRDNVQTINI-IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY---FVLDEIPF 266 (461)
Q Consensus 191 ~cp~Le~L~L~~~~c~~~~~~~~~i-~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~---~~~~~~~~ 266 (461)
.++.|+.|+|.+ |...+...-.+ ..++|+.|.+.+|...+. .....-..++|+.|.++++.... ..+.++++
T Consensus 162 ~l~~L~~L~L~~--n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 162 SFSSLKVLDLGG--NVLVGKIPNSLTNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred cCCCCCEEECcc--CcccccCChhhhhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 788888888888 53222211112 236788888877653310 01111245677777776654321 23456777
Q ss_pred eeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhH
Q 012521 267 LKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLL 346 (461)
Q Consensus 267 L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l 346 (461)
|+.+++..+.... .+...+..+++|+.|.++. +.+... ....+..+.+|++|++..+.. ...+
T Consensus 238 L~~L~L~~n~l~~----------~~p~~l~~l~~L~~L~L~~--n~l~~~---~p~~l~~l~~L~~L~Ls~n~l--~~~~ 300 (968)
T PLN00113 238 LNHLDLVYNNLTG----------PIPSSLGNLKNLQYLFLYQ--NKLSGP---IPPSIFSLQKLISLDLSDNSL--SGEI 300 (968)
T ss_pred CCEEECcCceecc----------ccChhHhCCCCCCEEECcC--Ceeecc---CchhHhhccCcCEEECcCCee--ccCC
Confidence 7777776554321 1223355666777777765 332210 011122344555555554422 1113
Q ss_pred HHHHhcCCCCeeEEEeecc
Q 012521 347 TPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 347 ~~ll~~~p~L~~L~l~~~~ 365 (461)
+..+.++++|+.|++..+.
T Consensus 301 p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNN 319 (968)
T ss_pred ChhHcCCCCCcEEECCCCc
Confidence 3344555666666665543
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.74 E-value=6.3e-09 Score=68.19 Aligned_cols=35 Identities=37% Similarity=0.677 Sum_probs=30.9
Q ss_pred CCCCChHHHHHHHcCCCccchhhhcccchhhHHhh
Q 012521 16 TSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDLW 50 (461)
Q Consensus 16 ~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~lw 50 (461)
|+.||+||+.+||++|+.+|+++++.|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.66 E-value=1.3e-08 Score=112.02 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=55.8
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeecc-CC-CCccccCCccEEEeee-ecCChhHHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVID-IP-GSGICFPSLKILHFGF-CHPDRGLMQKFF 189 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~ 189 (461)
.+++.|++.... ....+|..+..+++|++|+|.+|.+.. +| .+ ..+++|++|+|.+ .+. ..+..-+
T Consensus 164 ~~L~~L~L~~n~--------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~--~~~p~~l 232 (968)
T PLN00113 164 SSLKVLDLGGNV--------LVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLS--GEIPYEI 232 (968)
T ss_pred CCCCEEECccCc--------ccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccC--CcCChhH
Confidence 478888665432 223456556667777777777776532 22 23 5567777777766 332 1222235
Q ss_pred hcCCccCeEEEeeeecCCCCeeEEEE-EcCCcceEEEEEEe
Q 012521 190 SSCPTLEELTIEGILHPRDNVQTINI-IVQTLKRLSISVFV 229 (461)
Q Consensus 190 ~~cp~Le~L~L~~~~c~~~~~~~~~i-~~~sL~~L~l~~~~ 229 (461)
..+++|+.|++.+ |...+...-.+ ..++|+.|.+.++.
T Consensus 233 ~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 233 GGLTSLNHLDLVY--NNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred hcCCCCCEEECcC--ceeccccChhHhCCCCCCEEECcCCe
Confidence 5667777777766 42211111011 12456666665544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.60 E-value=1.4e-08 Score=98.34 Aligned_cols=26 Identities=4% Similarity=0.033 Sum_probs=14.1
Q ss_pred ceEEEEEE--eeccchhHHHHHHHHHhc
Q 012521 397 CVEVIEIT--NLKREDYELEMVRYLLEN 422 (461)
Q Consensus 397 ~L~~v~i~--~~~g~~~~~~l~~~ll~~ 422 (461)
+||++.|. +|-..++-.=+..++..+
T Consensus 440 ~Lk~Lv~nSssflCDCql~Wl~qWl~~~ 467 (873)
T KOG4194|consen 440 ELKELVMNSSSFLCDCQLKWLAQWLYRR 467 (873)
T ss_pred hhhhhhhcccceEEeccHHHHHHHHHhc
Confidence 67777776 455544433444444443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.55 E-value=9.9e-09 Score=99.30 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=82.2
Q ss_pred cCCCCccEEEeceeeeccCCCCccccCCccEEEeeeecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-EcCCc
Q 012521 142 LTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGFCHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IVQTL 220 (461)
Q Consensus 142 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~~sL 220 (461)
...++|+.++|..+.+..+|.++....+|+.|+|.+..++.-.-++ ++..|.||.|+|+. +....+..-.. ...++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSr--N~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSR--NLISEIPKPSFPAKVNI 175 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhh--chhhcccCCCCCCCCCc
Confidence 4478999999999999888988555567999999984443322222 66779999999987 43222221111 23678
Q ss_pred ceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc---eEeecCCCeeEEEEEEEE
Q 012521 221 KRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEF 276 (461)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~ 276 (461)
+.|.+.++.....+ ..-.-...+|..|+++.+.... ..+.++|.|+.+.+....
T Consensus 176 ~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 176 KKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred eEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 88888876543221 1111122377888887654432 345667777777766654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.50 E-value=9.9e-08 Score=105.94 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=32.3
Q ss_pred cccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 135 LELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
..+|.. +...+|++|+|.++.+..++.....+++|+.|+|.+ ... ..+.. ++.+++|+.|+|.+
T Consensus 602 ~~lP~~-f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l--~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 602 RCMPSN-FRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL--KEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred CCCCCc-CCccCCcEEECcCccccccccccccCCCCCEEECCCCCCc--CcCCc-cccCCcccEEEecC
Confidence 344433 235566666666666544332214566666666654 211 11111 34456666666666
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.35 E-value=5.6e-07 Score=100.02 Aligned_cols=110 Identities=16% Similarity=0.051 Sum_probs=56.4
Q ss_pred cccCCcccCC-CCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE
Q 012521 135 LELPQSILTC-ETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT 212 (461)
Q Consensus 135 ~~lp~~l~~~-~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~ 212 (461)
..+|..+... .+|+.|.+.++.+..+|.. ..+.+|++|+|.+ ... .+-.-+..++.|+.|+|.+ |. .+..
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f~~~~L~~L~L~~s~l~---~L~~~~~~l~~Lk~L~Ls~--~~--~l~~ 649 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-FRPENLVKLQMQGSKLE---KLWDGVHSLTGLRNIDLRG--SK--NLKE 649 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCCCCCCc-CCccCCcEEECcCcccc---ccccccccCCCCCEEECCC--CC--CcCc
Confidence 3455544443 3577777777666555544 4556777777766 321 1111134567777777776 32 1211
Q ss_pred EE--EEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeec
Q 012521 213 IN--IIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIAN 254 (461)
Q Consensus 213 ~~--i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~ 254 (461)
+. -..++|+.|.+.+|..... .....-..++|+.|+++++
T Consensus 650 ip~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 650 IPDLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCccccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCC
Confidence 11 1236677777766654310 0111123456666666554
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.33 E-value=5.5e-08 Score=92.83 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=6.5
Q ss_pred hcCCccCeEEEee
Q 012521 190 SSCPTLEELTIEG 202 (461)
Q Consensus 190 ~~cp~Le~L~L~~ 202 (461)
..++.|+.|++.+
T Consensus 78 ~~~~~L~~L~l~~ 90 (319)
T cd00116 78 TKGCGLQELDLSD 90 (319)
T ss_pred HhcCceeEEEccC
Confidence 3344555555554
No 13
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.31 E-value=1.4e-07 Score=62.14 Aligned_cols=37 Identities=46% Similarity=0.719 Sum_probs=31.4
Q ss_pred CCCCChHHHHHHHcCCCccchhhhcccchhhHHhhcc
Q 012521 16 TSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDLWTS 52 (461)
Q Consensus 16 ~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~lw~~ 52 (461)
+++||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.31 E-value=4.1e-09 Score=98.03 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=53.7
Q ss_pred CccEEEeceeeecc---CCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCC---CCeeEEEEEcC
Q 012521 146 TLVELKLCSDIVID---IPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPR---DNVQTINIIVQ 218 (461)
Q Consensus 146 ~L~~L~L~~~~l~~---~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~---~~~~~~~i~~~ 218 (461)
-|+.|+|.||+=.. .-.+...+|+++.|.+.+ ..+++..+..+...|+.|+.|.+.. |.. -.+..+.-.++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~--c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS--CSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc--cchhHHHHHHHHHHhhh
Confidence 47888888775321 112235788888888888 6667788888888888888888887 521 11122334566
Q ss_pred CcceEEEEEEeec
Q 012521 219 TLKRLSISVFVMQ 231 (461)
Q Consensus 219 sL~~L~l~~~~~~ 231 (461)
+|+.|+++.|.-.
T Consensus 217 kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 217 KLKYLNLSWCPQI 229 (483)
T ss_pred hHHHhhhccCchh
Confidence 6666666666543
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.1e-08 Score=90.86 Aligned_cols=208 Identities=17% Similarity=0.174 Sum_probs=139.9
Q ss_pred CCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCe--eEEEEEc
Q 012521 143 TCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV--QTINIIV 217 (461)
Q Consensus 143 ~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~--~~~~i~~ 217 (461)
..+.|+...|.++.+..++. ....|++++.|+|++ -+.....+..++...|+||.|+|+. +..... .......
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~--Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS--NRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc--ccccCCccccchhhh
Confidence 36788899999988866441 226799999999999 6667788889999999999999987 522111 2223355
Q ss_pred CCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccC---ceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHH
Q 012521 218 QTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLA---YFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSA 294 (461)
Q Consensus 218 ~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 294 (461)
+.|+.|.+..|.... .....+....|+|+.|.+.++... ......+..|++++++...... ......
T Consensus 197 ~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~---------~~~~~~ 266 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID---------FDQGYK 266 (505)
T ss_pred hhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc---------cccccc
Confidence 889999999987542 123556778899999999877321 1223345667777776654322 112234
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhc---cCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVL---NNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
...+++|+.|.++. ..+..+..+. ....-.|++|+.|.+..+.-.+|..+-+ ++..++|+.|.+....
T Consensus 267 ~~~l~~L~~Lnls~--tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSS--TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITLNY 337 (505)
T ss_pred cccccchhhhhccc--cCcchhcCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhccccc
Confidence 56678888888887 5444442222 2233578899999888876545666554 3566888888877765
No 16
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.16 E-value=9.9e-07 Score=55.83 Aligned_cols=34 Identities=50% Similarity=0.764 Sum_probs=31.4
Q ss_pred CChHHHHHHHcCCCccchhhhcccchhhHHhhcc
Q 012521 19 LPDHLLCRILSCLPTEDAVRTCILSSRWRDLWTS 52 (461)
Q Consensus 19 LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~lw~~ 52 (461)
||+|++.+||++|+.+|+.+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.09 E-value=4.4e-07 Score=86.63 Aligned_cols=57 Identities=21% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCCccEEEeceeeecc--CCCCcccc---CCccEEEeee-ecCChhHHH---HHHhcC-CccCeEEEee
Q 012521 144 CETLVELKLCSDIVID--IPGSGICF---PSLKILHFGF-CHPDRGLMQ---KFFSSC-PTLEELTIEG 202 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~--~~~~~~~~---~~L~~L~L~~-~~~~~~~l~---~l~~~c-p~Le~L~L~~ 202 (461)
+++|+.|+|++|.+.. ...+ ..+ ++|++|++.+ .+. +.+.. ..+..+ |.|++|++.+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~-~~~~~~l~~~l~~~~~~L~~L~L~~ 146 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLG-DRGLRLLAKGLKDLPPALEKLVLGR 146 (319)
T ss_pred cCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccc-hHHHHHHHHHHHhCCCCceEEEcCC
Confidence 5566666666655531 1111 112 3366666665 322 22222 223334 6666666666
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.03 E-value=8.1e-06 Score=85.21 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=60.7
Q ss_pred cccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEE
Q 012521 135 LELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTI 213 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~ 213 (461)
..+|..+. ++|+.|.+.++.+..+|.. .++|++|+|.+ .+.. +. ...+.|++|++.+ |....+..
T Consensus 214 tsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts---LP---~lp~sL~~L~Ls~--N~L~~Lp~- 279 (788)
T PRK15387 214 TTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS---LP---VLPPGLLELSIFS--NPLTHLPA- 279 (788)
T ss_pred CcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc---cc---CcccccceeeccC--Cchhhhhh-
Confidence 35666543 4788888888887766653 57888888887 3331 11 1246788888877 53322221
Q ss_pred EEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccC
Q 012521 214 NIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLA 257 (461)
Q Consensus 214 ~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~ 257 (461)
...+|+.|.+.++... .+....|+|+.|+++++...
T Consensus 280 --lp~~L~~L~Ls~N~Lt------~LP~~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 280 --LPSGLCKLWIFGNQLT------SLPVLPPGLQELSVSDNQLA 315 (788)
T ss_pred --chhhcCEEECcCCccc------cccccccccceeECCCCccc
Confidence 2256777777665432 22233467888887766443
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=3.9e-06 Score=76.85 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=97.3
Q ss_pred hhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc---
Q 012521 182 RGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY--- 258 (461)
Q Consensus 182 ~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~--- 258 (461)
...+..++++|..|++|.|.+ |-.... .-..-+..|..|.. ....-..|.|+.+....+....
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N--~Glg~~-ag~~l~~al~~l~~-----------~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNN--CGLGPE-AGGRLGRALFELAV-----------NKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhc--CCCChh-HHHHHHHHHHHHHH-----------HhccCCCcceEEEEeeccccccccH
Confidence 467889999999999999999 621111 00110111111110 1222234556666554432211
Q ss_pred ----eEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhh-hccCCCCCCCccceE
Q 012521 259 ----FVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSF-VLNNNLPTFSNLISL 333 (461)
Q Consensus 259 ----~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~-~~~~~~~~~~~L~~L 333 (461)
-.+...|.|+++.+....... .+. ..+..-+.-|++|+.|+|.. +++..-.. +....+|.+++|+.|
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~----eG~--~al~eal~~~~~LevLdl~D--Ntft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRP----EGV--TALAEALEHCPHLEVLDLRD--NTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred HHHHHHHHhccccceEEEecccccC----chh--HHHHHHHHhCCcceeeeccc--chhhhHHHHHHHHHhcccchheee
Confidence 123445677776665543321 000 34555678889999999999 88765433 336678899999999
Q ss_pred EEEeccC--CChhh-HHHHHhcCCCCeeEEEeecc
Q 012521 334 ELHIDSC--FGWKL-LTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 334 ~l~~~~~--~~~~~-l~~ll~~~p~L~~L~l~~~~ 365 (461)
.+..|.. ..... +..+-+..|+|+.|.+.++.
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 9999854 22333 33455578999999999986
No 20
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.1e-06 Score=78.57 Aligned_cols=72 Identities=17% Similarity=0.068 Sum_probs=37.9
Q ss_pred hhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 289 NDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 289 ~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
..+..+...||++.+|+|+. +.+ +.+...+.+-.|+.|++|.++.|+......+.. +...|.|..|++.++.
T Consensus 303 sh~~tL~~rcp~l~~LDLSD--~v~--l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 303 SHLSTLVRRCPNLVHLDLSD--SVM--LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCV 374 (419)
T ss_pred hHHHHHHHhCCceeeecccc--ccc--cCchHHHHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEecccc
Confidence 34555566666666666665 211 112223334455666666666665544433332 3555666666666655
No 21
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=1e-05 Score=72.53 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=128.1
Q ss_pred CCccEEEeceeeeccCCCC---ccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCC-CCeeEEEEEcCC
Q 012521 145 ETLVELKLCSDIVIDIPGS---GICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPR-DNVQTINIIVQT 219 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~~---~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~-~~~~~~~i~~~s 219 (461)
..+..|-+.+|.++....+ +..+..++.|+|.+ ...+.+.+..++.+.|.|+.|+|.. +.. ..+..+.....+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~--N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC--NSLSSDIKSLPLPLKN 122 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC--CcCCCccccCcccccc
Confidence 3455677778887653322 35678999999999 6667889999999999999999987 421 222333334467
Q ss_pred cceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEee-----c-CCCeeEEEEEEEEceeecCCCCcchhhHHH
Q 012521 220 LKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLD-----E-IPFLKKAFVLVEFNVLRRNSSGIFENDARS 293 (461)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~-----~-~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 293 (461)
|++|.+.+...... ......-+.|.++.|.++.+....+.+. . .+.+..+....|....| ....+
T Consensus 123 l~~lVLNgT~L~w~-~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w--------~~~~~ 193 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWT-QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW--------LNKNK 193 (418)
T ss_pred eEEEEEcCCCCChh-hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH--------HHHHh
Confidence 88888876543210 1123334557777777766533222110 0 11222222222221111 67888
Q ss_pred HhhcCCCceEEEEecCCChHHHhhh-hccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 294 ALELVKRIKSMKILSLPDSMTVLSF-VLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 294 ~l~~~~~l~~L~l~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+.+.+|++..+.+.. .+++..+. ...+..|.++ -|.|......+|+++-. |...|.|..|.++...
T Consensus 194 l~r~Fpnv~sv~v~e--~PlK~~s~ek~se~~p~~~---~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCE--GPLKTESSEKGSEPFPSLS---CLNLGANNIDSWASVDA-LNGFPQLVDLRVSENP 260 (418)
T ss_pred HHhhcccchheeeec--CcccchhhcccCCCCCcch---hhhhcccccccHHHHHH-HcCCchhheeeccCCc
Confidence 889999999999998 66665543 3355666554 45666665556666554 5889999999999876
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.74 E-value=2.6e-05 Score=81.73 Aligned_cols=187 Identities=16% Similarity=0.166 Sum_probs=99.5
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT 212 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~ 212 (461)
...+|..+ .++|+.|.|++|.+..+|.. .+++|++|+|.+ .+.. +..- -.+.|+.|.|.+ |....+..
T Consensus 190 LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N~Lts---LP~~--l~~~L~~L~Ls~--N~L~~LP~ 258 (754)
T PRK15370 190 LTTIPACI--PEQITTLILDNNELKSLPEN--LQGNIKTLYANSNQLTS---IPAT--LPDTIQEMELSI--NRITELPE 258 (754)
T ss_pred cCcCCccc--ccCCcEEEecCCCCCcCChh--hccCCCEEECCCCcccc---CChh--hhccccEEECcC--CccCcCCh
Confidence 33455433 35788999998888766643 346899999987 4331 1111 125788888888 64332211
Q ss_pred EEEEcCCcceEEEEEEeecCcccceeEEE-ecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhH
Q 012521 213 INIIVQTLKRLSISVFVMQGYVSKRIFEI-RTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDA 291 (461)
Q Consensus 213 ~~i~~~sL~~L~l~~~~~~~~~~~~~~~~-~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~ 291 (461)
. ...+|+.|.++++.... +.. -.++|+.|+++++....+...-.++|+.+.+..+... .+
T Consensus 259 -~-l~s~L~~L~Ls~N~L~~------LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-----------~L 319 (754)
T PRK15370 259 -R-LPSALQSLDLFHNKISC------LPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-----------AL 319 (754)
T ss_pred -h-HhCCCCEEECcCCccCc------cccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-----------cC
Confidence 1 12478888887554321 111 1357888888776444322111123444333332111 00
Q ss_pred HHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 292 RSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 292 ~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.. ...++|+.|.++. +.+..+. ..+ .++|+.|++..+.... ++.-+ .++|+.|+|+.+.
T Consensus 320 P~--~l~~sL~~L~Ls~--N~Lt~LP----~~l--~~sL~~L~Ls~N~L~~---LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 320 PE--TLPPGLKTLEAGE--NALTSLP----ASL--PPELQVLDVSKNQITV---LPETL--PPTITTLDVSRNA 378 (754)
T ss_pred Cc--cccccceeccccC--CccccCC----hhh--cCcccEEECCCCCCCc---CChhh--cCCcCEEECCCCc
Confidence 00 1124678888877 5443221 111 2578888887764322 22111 2688888888865
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.69 E-value=1.8e-07 Score=91.47 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=107.1
Q ss_pred eecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeeeecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE
Q 012521 133 RILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGFCHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT 212 (461)
Q Consensus 133 ~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~ 212 (461)
....+|+.+|....|+.|+|+.+.+..+|.-...-+++-.|+|+...+ +..=..++.+..-|-.|+|++ +..+.+..
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~--NrLe~LPP 167 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN--NRLEMLPP 167 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc--chhhhcCH
Confidence 456788888889999999999888877664325557888888887222 111123444555566667766 43333221
Q ss_pred EEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccC----ceEeecCCCeeEEEEEEEEceeecCCCCcch
Q 012521 213 INIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLA----YFVLDEIPFLKKAFVLVEFNVLRRNSSGIFE 288 (461)
Q Consensus 213 ~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~ 288 (461)
-...-..|++|.++++....+ .-.-.-....|..|.+++.... ...+.++.+|.+++++-...
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~hf--QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L----------- 234 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLNHF--QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL----------- 234 (1255)
T ss_pred HHHHHhhhhhhhcCCChhhHH--HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-----------
Confidence 111123456666665542210 0111112233444555543221 12234444555444433221
Q ss_pred hhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 289 NDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 289 ~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
..+...+-.+++|+.|.|++ +.+.-++. ......+|+.|.++.+ ....++.-+-..|.|++|.+..+.
T Consensus 235 p~vPecly~l~~LrrLNLS~--N~iteL~~----~~~~W~~lEtLNlSrN---QLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSG--NKITELNM----TEGEWENLETLNLSRN---QLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred CcchHHHhhhhhhheeccCc--Cceeeeec----cHHHHhhhhhhccccc---hhccchHHHhhhHHHHHHHhccCc
Confidence 22334455566777777777 55443311 1123345666666554 223344445556777777666654
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.57 E-value=5.4e-07 Score=88.31 Aligned_cols=64 Identities=13% Similarity=0.233 Sum_probs=30.1
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeec
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
.+.+.+|++|.|++ +++... ....+|.+..|..|.++.... +...++.-+....||..++++.+
T Consensus 169 ~RRL~~LqtL~Ls~--NPL~hf---QLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSN--NPLNHF---QLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred HHHHhhhhhhhcCC--ChhhHH---HHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhcccccc
Confidence 44556666777766 554322 233455555555555554422 22222223333444555554444
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.56 E-value=0.00011 Score=77.02 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=22.9
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF 177 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~ 177 (461)
.++|++|+|++|.+..+|.. .++|++|+|.+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 47888999988887766643 46777777765
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=3.2e-06 Score=85.62 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=75.7
Q ss_pred CcccCCCCccEEEecee-eec-cC----CCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCC---C
Q 012521 139 QSILTCETLVELKLCSD-IVI-DI----PGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPR---D 208 (461)
Q Consensus 139 ~~l~~~~~L~~L~L~~~-~l~-~~----~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~---~ 208 (461)
+....|+.|+.|.+++| ... .. ......+++|+.|++.. ..+++.++..+...||.||.|.+.. |.. .
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~--c~~lt~~ 285 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSN--CSNLTDE 285 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCC--CCccchh
Confidence 34455889999999873 211 10 11225678899999988 5577888888888899999999888 531 3
Q ss_pred CeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEee
Q 012521 209 NVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIA 253 (461)
Q Consensus 209 ~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~ 253 (461)
++..+.-.+++|++|.+..|....+.....+...+|+|+.|.+..
T Consensus 286 gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 344445567889999999887654333333455577777766543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=5.2e-05 Score=71.65 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=70.7
Q ss_pred CCCccEEEeceeeeccCCCC--ccccCCccEEEeeeecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEE---cC
Q 012521 144 CETLVELKLCSDIVIDIPGS--GICFPSLKILHFGFCHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINII---VQ 218 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~---~~ 218 (461)
.|+|+.|+|+.+++..+-.. ...+++||+|.|.++-.+..++..++..||.|+.|.|.. .++...-..+ ..
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~----N~~~~~~~~~~~i~~ 246 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA----NEIILIKATSTKILQ 246 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc----ccccceecchhhhhh
Confidence 57788888887776542211 136788999999884445888888899999999999988 3222211111 25
Q ss_pred CcceEEEEEEeecCcccceeEEEecCCccEEEEeecccC
Q 012521 219 TLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLA 257 (461)
Q Consensus 219 sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~ 257 (461)
+|++|++.++....+ ......-..|.|+.|.++.+...
T Consensus 247 ~L~~LdLs~N~li~~-~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDF-DQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred HHhhccccCCccccc-ccccccccccchhhhhccccCcc
Confidence 788888887765532 11234445677777777665433
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.22 E-value=0.00015 Score=76.13 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=33.0
Q ss_pred CCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCCh-hhHHHHHhcCCCCeeEEEeecc
Q 012521 299 KRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGW-KLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 299 ~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+.|+.|++++ +.+..+. ..+ ..+|+.|++..+..... ..+..++..+|++..|.+..+.
T Consensus 367 ~~L~~LdLs~--N~Lt~LP----~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSR--NALTNLP----ENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCC--CcCCCCC----HhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 4566666665 4433210 011 12466666666643222 2355666677888888888765
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.22 E-value=2e-05 Score=79.80 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=32.5
Q ss_pred ccCCCCChHHHHHHHcCCCccchhhhcccchhhHHhhcc
Q 012521 14 DITSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDLWTS 52 (461)
Q Consensus 14 D~~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~lw~~ 52 (461)
+.+...|+.....+....+..+...+..++++|......
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 456678889999999999999999999999999876444
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.18 E-value=1.3e-05 Score=82.35 Aligned_cols=43 Identities=26% Similarity=0.226 Sum_probs=30.3
Q ss_pred cccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee
Q 012521 135 LELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF 177 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~ 177 (461)
..+|..++...+|+.|.+..|.+..+|.+...+++|++|+|..
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 4555555556666666666676666666646689999999988
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.11 E-value=4.5e-05 Score=65.01 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=22.9
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
+.+|+.|+|++|.+..+.++ ..+++|++|++.+ ...+-. ..+...||+|++|.+.+
T Consensus 41 l~~L~~L~Ls~N~I~~l~~l-~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEGL-PGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -TT--EEE-TTS--S--TT-----TT--EEE--SS---S-C--HHHHHH-TT--EEE-TT
T ss_pred hcCCCEEECCCCCCccccCc-cChhhhhhcccCCCCCCccc--cchHHhCCcCCEEECcC
Confidence 67888888888888777776 7788888888888 443221 12335688888888877
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.01 E-value=6.1e-05 Score=69.25 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=45.4
Q ss_pred CccceEEEEeccC--CChhhHHHHHhcCCCCeeEEEeeccccccCCCCCCcccccccccccCCccccccccceEEEEEEe
Q 012521 328 SNLISLELHIDSC--FGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTLQDIVFEDLVCVEPECAPNCLSSCVEVIEITN 405 (461)
Q Consensus 328 ~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~ 405 (461)
+.|+.+.+..+.. .....+..-+.+||+|+.|+|..+++. .. +... +. .+-|.+++|+++.+.+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft---~e-gs~~-------La---kaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT---LE-GSVA-------LA---KALSSWPHLRELNLGD 250 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh---hH-HHHH-------HH---HHhcccchheeecccc
Confidence 4455555554432 122334445666777777777666531 00 0000 10 1112445666666665
Q ss_pred ecc-chhHHHHHHHHHhcCcccceEEEEecC
Q 012521 406 LKR-EDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 406 ~~g-~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
+.- +..-..+++-+-+.+|.|+.+.+..+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcch
Confidence 432 223356666666666666666655543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.85 E-value=0.00039 Score=59.29 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE-EEEEcCCcc
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT-INIIVQTLK 221 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~-~~i~~~sL~ 221 (461)
+.++++|+|.|+.++.+...+..+.+|+.|+|++ ...+-++ +..++.|++|.+.+ +....+.. +.-..|+|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~--N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSN--NRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--S--S---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCC--CCCCccccchHHhCCcCC
Confidence 5568888888888877665533578888888887 4432232 45578888888887 54333321 111247888
Q ss_pred eEEEEEEeecCcccceeEEEecCCccEEEEeeccc
Q 012521 222 RLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSL 256 (461)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~ 256 (461)
+|.+.++.......... ...+|+|+.|.+.++..
T Consensus 92 ~L~L~~N~I~~l~~l~~-L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEP-LSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TTS---SCCCCGG-GGG-TT--EEE-TT-GG
T ss_pred EEECcCCcCCChHHhHH-HHcCCCcceeeccCCcc
Confidence 88887665432111111 12468888888877643
No 34
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.83 E-value=0.0014 Score=36.34 Aligned_cols=25 Identities=36% Similarity=0.725 Sum_probs=22.5
Q ss_pred CccEEEeee-ecCChhHHHHHHhcCC
Q 012521 169 SLKILHFGF-CHPDRGLMQKFFSSCP 193 (461)
Q Consensus 169 ~L~~L~L~~-~~~~~~~l~~l~~~cp 193 (461)
+||+|+|.. .+.++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999 8877779999999998
No 35
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.82 E-value=0.00036 Score=72.62 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=37.4
Q ss_pred CCCccEEEeceeee--ccCC-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 144 CETLVELKLCSDIV--IDIP-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 144 ~~~L~~L~L~~~~l--~~~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
-.+|++|+++|... ..++ ..+..||+|++|.+.+ .+. .+++..+..++|+|..|++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-chhHHHHhhccCccceeecCC
Confidence 35677777776432 2222 2235678888888877 554 344667777778888887777
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.65 E-value=0.00054 Score=61.86 Aligned_cols=215 Identities=19% Similarity=0.174 Sum_probs=122.1
Q ss_pred cccCCccEEEeeeecCChhHHHHHHhcCCccCeEEEeeeecCCCCe-----------------------eEEEEEc-CCc
Q 012521 165 ICFPSLKILHFGFCHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV-----------------------QTINIIV-QTL 220 (461)
Q Consensus 165 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~-----------------------~~~~i~~-~sL 220 (461)
..|++|+++.++.. +.+.+..+...-|.|+++.+++ ...... ....+.. ..|
T Consensus 211 ~~f~~l~~~~~s~~--~~~~i~~~~~~kptl~t~~v~~--s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 211 NAFRNLKTLKFSAL--STENIVDIELLKPTLQTICVHN--TTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred HHhhhhheeeeecc--chhheeceeecCchhheeeeec--ccccccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 34667777666541 2244445555667777777765 211111 1111222 457
Q ss_pred ceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce-EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCC
Q 012521 221 KRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF-VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVK 299 (461)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (461)
+.|+++++..... ..-.--+|.++.|+++.+....+ .+..+++|+.++++.... ..+..+-..+.
T Consensus 287 telDLS~N~I~~i---DESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~L-----------s~~~Gwh~KLG 352 (490)
T KOG1259|consen 287 TELDLSGNLITQI---DESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLL-----------AECVGWHLKLG 352 (490)
T ss_pred hhccccccchhhh---hhhhhhccceeEEeccccceeeehhhhhcccceEeecccchh-----------HhhhhhHhhhc
Confidence 7777776543311 11122368888888886644322 356678888887776543 33445556778
Q ss_pred CceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCCCCcccc
Q 012521 300 RIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTLQDIVF 379 (461)
Q Consensus 300 ~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (461)
|+++|.|+. +.++.++. +..+.+|..|++..+...+.+.+.. +.+.|.||.|.+.++.-....+.+..
T Consensus 353 NIKtL~La~--N~iE~LSG-----L~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NPl~~~vdYRTK---- 420 (490)
T KOG1259|consen 353 NIKTLKLAQ--NKIETLSG-----LRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNPLAGSVDYRTK---- 420 (490)
T ss_pred CEeeeehhh--hhHhhhhh-----hHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCCccccchHHHH----
Confidence 999999998 87776632 2344567778888775434443333 47889999999988762111111100
Q ss_pred cccccccCCccccccccceEEEEEEeeccchhHHHHHHHH
Q 012521 380 EDLVCVEPECAPNCLSSCVEVIEITNLKREDYELEMVRYL 419 (461)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~l~~~l 419 (461)
+-.-+-.+-.+|.+.+-.++..|+..+..+
T Consensus 421 ----------VLa~FGERaSE~~LD~~~~~~~ELDTV~Vl 450 (490)
T KOG1259|consen 421 ----------VLARFGERASEISLDNEPGNQQELDTVLVL 450 (490)
T ss_pred ----------HHHHHhhhhhheecCCCCcchhhhhHHHHH
Confidence 001122334556667777777777766554
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.59 E-value=4.4e-05 Score=71.40 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=59.5
Q ss_pred CCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCCCCcccc-cc---c-ccccCCcccccccc
Q 012521 322 NNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTLQDIVF-ED---L-VCVEPECAPNCLSS 396 (461)
Q Consensus 322 ~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~~~~~ 396 (461)
..+.++++|..|+++.+.. ..++.-+...-.||+|+|+++.+. .-+++...... |. . ..+.. +++....
T Consensus 429 ~~l~~l~kLt~L~L~NN~L---n~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~--vd~~~l~ 502 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLL---NDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS--VDPSGLK 502 (565)
T ss_pred HHHHhhhcceeeecccchh---hhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc--cChHHhh
Confidence 3445678888888877632 123333344455889999888641 11111100000 00 0 00111 3322334
Q ss_pred ceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 397 CVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 397 ~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
.++.+..-+.+.+ .++.+.-.++|+.+|+.+.+..+.
T Consensus 503 nm~nL~tLDL~nN--dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQNN--DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCCC--chhhCChhhccccceeEEEecCCc
Confidence 4555555555444 489999999999999999998776
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.52 E-value=0.00094 Score=46.23 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=30.6
Q ss_pred CCccEEEeceeeeccCCCC-ccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 145 ETLVELKLCSDIVIDIPGS-GICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
++|++|.|.+|.+..++.. -.++++|++|++.+ ... ..-...+.++|.|+.|++.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~--~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT--SIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES--EEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC--ccCHHHHcCCCCCCEEeCcC
Confidence 3566666666666544421 14566666666666 332 11112356667777776665
No 39
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.38 E-value=6.8e-05 Score=61.99 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=39.6
Q ss_pred cccCCCCccEEEeceeeeccCC-CCccccCCccEEEeeeecCChhHHHHHHhcCCccCeEEEee
Q 012521 140 SILTCETLVELKLCSDIVIDIP-GSGICFPSLKILHFGFCHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 140 ~l~~~~~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
.+|..++.+.|.|+++.+..+| .. +.+.+|+.|++.+..+ +.+..-+++.|.|+.|++.-
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGM 88 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchh--hhcChhhhhchhhhheecch
Confidence 5677788888888888775544 45 7788888888887222 22333356666666666654
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.96 E-value=0.0044 Score=56.18 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=18.1
Q ss_pred cCCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEE
Q 012521 191 SCPTLEELTIEGILHPRDNVQTINIIVQTLKRLSIS 226 (461)
Q Consensus 191 ~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~ 226 (461)
.+.+|..+.++. |...++..+...-|+|..+.+.
T Consensus 212 ~f~~l~~~~~s~--~~~~~i~~~~~~kptl~t~~v~ 245 (490)
T KOG1259|consen 212 AFRNLKTLKFSA--LSTENIVDIELLKPTLQTICVH 245 (490)
T ss_pred Hhhhhheeeeec--cchhheeceeecCchhheeeee
Confidence 345555666655 5444444455555555555554
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.85 E-value=0.0027 Score=66.26 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=60.0
Q ss_pred hhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccc
Q 012521 289 NDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHK 368 (461)
Q Consensus 289 ~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~ 368 (461)
..+..+..++|+|..|++++ ..+..+ .-+..+.||+.|.+..-.......+.. |-+..+|+.|+|+......
T Consensus 163 ~dF~~lc~sFpNL~sLDIS~--TnI~nl-----~GIS~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 163 DDFSQLCASFPNLRSLDISG--TNISNL-----SGISRLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNND 234 (699)
T ss_pred hhHHHHhhccCccceeecCC--CCccCc-----HHHhccccHHHHhccCCCCCchhhHHH-HhcccCCCeeecccccccc
Confidence 44566667777777777776 443322 112334455544443322222222333 3346777777777765311
Q ss_pred cCCCCCCcccccccccccCCccccccccceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEE
Q 012521 369 LTPNTLQDIVFEDLVCVEPECAPNCLSSCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVG 432 (461)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~ 432 (461)
.+ .. +.. .-+|. .-|..+++-++.|+.-.-+++..+++.=|+|+++.+.
T Consensus 235 ~~-~i-----------i~q--Ylec~-~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 235 DT-KI-----------IEQ--YLECG-MVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ch-HH-----------HHH--HHHhc-ccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 00 00 000 11232 1244555556666655556666666666666666643
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.78 E-value=0.0098 Score=41.01 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=35.7
Q ss_pred eecccCCcccC-CCCccEEEeceeeeccCC--CCccccCCccEEEeee
Q 012521 133 RILELPQSILT-CETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF 177 (461)
Q Consensus 133 ~~~~lp~~l~~-~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~ 177 (461)
....+|...|. +++|++|+|+++.+..++ .+ .++++|++|++.+
T Consensus 12 ~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f-~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 12 KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAF-SNLPNLRYLDLSN 58 (61)
T ss_dssp TESEECTTTTTTGTTESEEEETSSSESEEETTTT-TTSTTESEEEETS
T ss_pred CCCccCHHHHcCCCCCCEeEccCCccCccCHHHH-cCCCCCCEEeCcC
Confidence 45677876666 999999999999886654 34 7899999999986
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.54 E-value=0.0062 Score=38.80 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=17.9
Q ss_pred CccEEEeceeeeccCCC-CccccCCccEEEeee
Q 012521 146 TLVELKLCSDIVIDIPG-SGICFPSLKILHFGF 177 (461)
Q Consensus 146 ~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~L~~ 177 (461)
+|++|+|.++.+..++. + ..|++|++|++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchH-hCCCCCCEEEecC
Confidence 56666666666655554 4 5566666666665
No 44
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.40 E-value=0.0025 Score=66.21 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=36.1
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
...+|..+....+|++|.|.++.+...|..-..+.+|..|+++. .|. .+...+..|.+++.+...+
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~---~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG---PIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC---CCchhHHhhhHHHHHhhhc
Confidence 44555555556667777777666655442225566666677666 443 2223344455555555554
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.25 E-value=0.043 Score=47.14 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=43.7
Q ss_pred CCCCccEEEeceeeeccCC-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 143 TCETLVELKLCSDIVIDIP-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 143 ~~~~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
..++|.+|.|+++++..+. .....+|+|++|.|.+ ....-++++. +..||.|+.|.+.+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLG 122 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecC
Confidence 3678999999988875543 3335688899999988 5544555555 66789999999887
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.025 Score=51.42 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=49.3
Q ss_pred hhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCC-CCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 289 NDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLP-TFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 289 ~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
..+..++..+|+++.|.|+. +.+. ......| ...||+.|-|.+... .|..+..++...|.++.|+++.+.
T Consensus 87 seI~~ile~lP~l~~LNls~--N~L~----s~I~~lp~p~~nl~~lVLNgT~L-~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 87 SEIGAILEQLPALTTLNLSC--NSLS----SDIKSLPLPLKNLRVLVLNGTGL-SWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HHHHHHHhcCccceEeeccC--CcCC----CccccCcccccceEEEEEcCCCC-Chhhhhhhhhcchhhhhhhhccch
Confidence 66777888888888888887 5442 1123344 456777777776655 677777788888888888877764
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.84 E-value=0.011 Score=58.08 Aligned_cols=168 Identities=18% Similarity=0.194 Sum_probs=97.1
Q ss_pred CCCccEEEeceeeeccCCCCcccc-CCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcc
Q 012521 144 CETLVELKLCSDIVIDIPGSGICF-PSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLK 221 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~-~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~ 221 (461)
.+.++.|.+.++.+..++.....+ ++|+.|++.+ ... .+..-+..+|.|+.|.+.+ |....+.......+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~---~l~~~~~~l~~L~~L~l~~--N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---SLPSPLRNLPNLKNLDLSF--NDLSDLPKLLSNLSNLN 189 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchh---hhhhhhhccccccccccCC--chhhhhhhhhhhhhhhh
Confidence 467888888888776666551334 2899999986 332 2212367889999999988 65444433333567888
Q ss_pred eEEEEEEeecCcccceeEEEecCC-ccEEEEeecc-cC-ceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcC
Q 012521 222 RLSISVFVMQGYVSKRIFEIRTPN-LEYLSIIANS-LA-YFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELV 298 (461)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~p~-L~~L~~~~~~-~~-~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (461)
.|.++++.... -...+..++ |+++.++++. .. ...+.+...+..+.+..... ..+...+..+
T Consensus 190 ~L~ls~N~i~~----l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-----------~~~~~~~~~l 254 (394)
T COG4886 190 NLDLSGNKISD----LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-----------EDLPESIGNL 254 (394)
T ss_pred heeccCCcccc----CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-----------eeccchhccc
Confidence 88887765331 111112344 8888877662 11 11233334443333211111 1113456677
Q ss_pred CCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEec
Q 012521 299 KRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHID 338 (461)
Q Consensus 299 ~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 338 (461)
++++.|.++. +.+..+. .+..+.+|++|++...
T Consensus 255 ~~l~~L~~s~--n~i~~i~-----~~~~~~~l~~L~~s~n 287 (394)
T COG4886 255 SNLETLDLSN--NQISSIS-----SLGSLTNLRELDLSGN 287 (394)
T ss_pred cccceecccc--ccccccc-----cccccCccCEEeccCc
Confidence 7888888887 6554431 1456667777777765
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.55 E-value=0.026 Score=51.93 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=34.6
Q ss_pred CccCCCCC----hHHHHHHHcCCCccchhhhcccchhhHHh
Q 012521 13 GDITSRLP----DHLLCRILSCLPTEDAVRTCILSSRWRDL 49 (461)
Q Consensus 13 ~D~~s~LP----d~vl~~Ils~Lp~~~~~~~s~vsrrWr~l 49 (461)
.|-++.|| |++...||++|+..+++.+-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 47789999 99999999999999999999999999964
No 49
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.48 E-value=0.039 Score=52.74 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCCChHHHHHHHcCCC-ccchhhhcccchhhHHhhc
Q 012521 16 TSRLPDHLLCRILSCLP-TEDAVRTCILSSRWRDLWT 51 (461)
Q Consensus 16 ~s~LPd~vl~~Ils~Lp-~~~~~~~s~vsrrWr~lw~ 51 (461)
.++||+|+|..|..+|| .-|++|.+.|||.||..-.
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 57899999999999997 7899999999999998544
No 50
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.48 E-value=0.0037 Score=58.94 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=39.9
Q ss_pred ceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCC
Q 012521 132 KRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCP 193 (461)
Q Consensus 132 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp 193 (461)
...-++|..+--..+|.+|+++++.+...|..-+++ +|+.|.+.+ .. ..++.=+-.|+
T Consensus 262 Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl---rTiRr~ii~~g 320 (565)
T KOG0472|consen 262 NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL---RTIRREIISKG 320 (565)
T ss_pred cccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch---HHHHHHHHccc
Confidence 356677877777889999999999887766442555 888888887 33 34443344444
No 51
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=93.45 E-value=0.0084 Score=56.51 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=34.4
Q ss_pred eecccCCcccC-CCCccEEEeceeeeccCC--CCccccCCccEEEeee
Q 012521 133 RILELPQSILT-CETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF 177 (461)
Q Consensus 133 ~~~~lp~~l~~-~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~ 177 (461)
..-.+|+..|. .++|++|+|+++.+..+. .| .++++|.+|.+.+
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF-~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF-KGLASLLSLVLYG 124 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhh-hhhHhhhHHHhhc
Confidence 46788888887 899999999988775433 45 6788888887776
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.40 E-value=0.13 Score=49.92 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=15.6
Q ss_pred CccEEEeceee-eccCCCCccccCCccEEEeee
Q 012521 146 TLVELKLCSDI-VIDIPGSGICFPSLKILHFGF 177 (461)
Q Consensus 146 ~L~~L~L~~~~-l~~~~~~~~~~~~L~~L~L~~ 177 (461)
+|++|.+++|. +..+|.. -.++|++|.+.+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~--LP~nLe~L~Ls~ 103 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGS--IPEGLEKLTVCH 103 (426)
T ss_pred CCcEEEccCCCCcccCCch--hhhhhhheEccC
Confidence 47777776653 2333321 124666666664
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.14 E-value=0.026 Score=50.41 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEE--cCCc
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINII--VQTL 220 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~--~~sL 220 (461)
..+|+.|++.++.+..+..+ -.+|+||+|.++. .+....++.-++..||+|.+|+++. +....+..+.-. -++|
T Consensus 42 ~~~le~ls~~n~gltt~~~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~--Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG--NKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeecccC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecC--Cccccccccchhhhhcch
Confidence 45677778888877654444 4578999999988 4444567777788899999999998 543333333221 1557
Q ss_pred ceEEEEEEeecCcc-cceeEEEecCCccEEEEe
Q 012521 221 KRLSISVFVMQGYV-SKRIFEIRTPNLEYLSII 252 (461)
Q Consensus 221 ~~L~l~~~~~~~~~-~~~~~~~~~p~L~~L~~~ 252 (461)
.+|.+.+|.....+ ....+..-.|+|++|+..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 77777776544221 112233334555555543
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.69 E-value=0.098 Score=47.12 Aligned_cols=162 Identities=19% Similarity=0.136 Sum_probs=84.5
Q ss_pred hhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce--
Q 012521 182 RGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF-- 259 (461)
Q Consensus 182 ~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~-- 259 (461)
..-+..++++-..|+.|.+.+ |-...+..-+|. ..|..|.. ..-.-+.|.|+++....+.....
T Consensus 109 ~e~L~d~is~~t~l~HL~l~N--nGlGp~aG~rig-kal~~la~-----------nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNN--NGLGPIAGGRIG-KALFHLAY-----------NKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred chHHHHHHhcCCCceeEEeec--CCCCccchhHHH-HHHHHHHH-----------HhhhccCCCceEEEeccchhccCcH
Confidence 355667778888888888887 521111111110 11111110 12233456666666544322111
Q ss_pred -----EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhh-hhccCCCCCCCccceE
Q 012521 260 -----VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLS-FVLNNNLPTFSNLISL 333 (461)
Q Consensus 260 -----~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~-~~~~~~~~~~~~L~~L 333 (461)
.+..-..|..+.+...... |.+.. .-...-+..+.+|+.|+|.. +++.... .+....++..++|+.|
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIr----pegv~-~L~~~gl~y~~~LevLDlqD--Ntft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIR----PEGVT-MLAFLGLFYSHSLEVLDLQD--NTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcC----cchhH-HHHHHHHHHhCcceeeeccc--cchhhhhHHHHHHHhcccchhhhc
Confidence 1111234555554443221 11100 12223356678999999998 8776543 2345567888889999
Q ss_pred EEEeccCCChhhHHHHHhc-----CCCCeeEEEeecc
Q 012521 334 ELHIDSCFGWKLLTPFLKR-----SPSLKVLNLDFSK 365 (461)
Q Consensus 334 ~l~~~~~~~~~~l~~ll~~-----~p~L~~L~l~~~~ 365 (461)
.+..|-. ...+...+++. .|+|+.|..+.+.
T Consensus 248 ~lnDCll-s~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 248 RLNDCLL-SNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cccchhh-ccccHHHHHHHhhhhcCCCccccccchhh
Confidence 9988854 33444444443 5788777666654
No 55
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.02 E-value=0.052 Score=49.64 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=30.7
Q ss_pred CccCCCCChHHHHHHHcC-----CCccchhhhcccchhhHH
Q 012521 13 GDITSRLPDHLLCRILSC-----LPTEDAVRTCILSSRWRD 48 (461)
Q Consensus 13 ~D~~s~LPd~vl~~Ils~-----Lp~~~~~~~s~vsrrWr~ 48 (461)
-+.|+.||||||..||.. ++.+++.++|+|||.|+.
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 355789999999999865 457999999999999985
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.63 E-value=0.11 Score=32.99 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCC
Q 012521 168 PSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRD 208 (461)
Q Consensus 168 ~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~ 208 (461)
++|++|+|.+ .+. .+...+..||.|+.|++.+ |...
T Consensus 1 ~~L~~L~l~~N~i~---~l~~~l~~l~~L~~L~l~~--N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT---DLPPELSNLPNLETLNLSN--NPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S---SHGGHGTTCTTSSEEEETS--SCCS
T ss_pred CcceEEEccCCCCc---ccCchHhCCCCCCEEEecC--CCCC
Confidence 5899999998 554 3444578999999999999 6433
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.56 E-value=0.016 Score=52.19 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=52.4
Q ss_pred CccEEEEeecccCceEe-ecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCC
Q 012521 245 NLEYLSIIANSLAYFVL-DEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNN 323 (461)
Q Consensus 245 ~L~~L~~~~~~~~~~~~-~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~ 323 (461)
+.+.|+++|+....+.+ ..+|.|+-+.+++..... + .-+..|.+|++|+|.. +.+..+.... .
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss-----------L-~pl~rCtrLkElYLRk--N~I~sldEL~--Y 83 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS-----------L-APLQRCTRLKELYLRK--NCIESLDELE--Y 83 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeecccccc-----------c-hhHHHHHHHHHHHHHh--cccccHHHHH--H
Confidence 34445555544443322 335555555555543211 1 1245667777777776 6665543221 1
Q ss_pred CCCCCccceEEEEeccCC---ChhhHHHHHhcCCCCeeEEEe
Q 012521 324 LPTFSNLISLELHIDSCF---GWKLLTPFLKRSPSLKVLNLD 362 (461)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~---~~~~l~~ll~~~p~L~~L~l~ 362 (461)
+..+++|+.|-|..+-+. ....=..+|+..|||++|+=.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 223446666666665331 222344567888888888543
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=0.0033 Score=56.41 Aligned_cols=89 Identities=18% Similarity=0.124 Sum_probs=50.7
Q ss_pred eeEEEecCCccEEEEeecccCce-EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHH
Q 012521 237 RIFEIRTPNLEYLSIIANSLAYF-VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTV 315 (461)
Q Consensus 237 ~~~~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~ 315 (461)
..+....|.|+.|.++-+...+. .+..|.+|+++++.-.-... -.-...+.++|+|+.|.|..-+.+...
T Consensus 34 Isic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s---------ldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 34 ISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES---------LDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred HHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc---------HHHHHHHhcCchhhhHhhccCCccccc
Confidence 33444567777777766544432 45667777777766543321 122234778888888888763333333
Q ss_pred hhhhccCCCCCCCccceEE
Q 012521 316 LSFVLNNNLPTFSNLISLE 334 (461)
Q Consensus 316 l~~~~~~~~~~~~~L~~L~ 334 (461)
-..|....+..++||+.|+
T Consensus 105 g~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 105 GQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhHHHHHHHHcccchhcc
Confidence 3344444455666777664
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=91.10 E-value=0.015 Score=59.21 Aligned_cols=68 Identities=19% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCCCeeEEEEEEcccCcCCc---ccHHHHHHHHHhcCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeee
Q 012521 81 QLKDIHNFHLRSSTLREKDF---SRVSEWICFAIQRNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIV 157 (461)
Q Consensus 81 ~~~~i~~l~l~~~~~~~~~~---~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l 157 (461)
.+++++.|+..... ..+. ..+.+.++++.. .+.+.+.-.. ...+.=|-.+|...+|++|.|.+|.+
T Consensus 53 ~g~~~~~f~a~~s~--~ads~vl~qLq~i~d~lqk--t~~lkl~~~p-------a~~pt~pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 53 SGAPVDYFRAYVSD--NADSRVLEQLQRILDFLQK--TKVLKLLPSP-------ARDPTEPISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred CCCCCceeEEecCC--cccchHHHHHHHHHHHHhh--heeeeecccC-------CCCCCCCceeccccceeeEEecCcch
Confidence 45889988876554 2222 233444444332 2333222111 12222266788889999999999987
Q ss_pred cc
Q 012521 158 ID 159 (461)
Q Consensus 158 ~~ 159 (461)
..
T Consensus 122 ~~ 123 (1096)
T KOG1859|consen 122 ST 123 (1096)
T ss_pred hh
Confidence 54
No 60
>PLN03150 hypothetical protein; Provisional
Probab=90.99 E-value=0.17 Score=52.97 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=52.8
Q ss_pred CccEEEeceeeecc-CC-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-EcCCcc
Q 012521 146 TLVELKLCSDIVID-IP-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IVQTLK 221 (461)
Q Consensus 146 ~L~~L~L~~~~l~~-~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~~sL~ 221 (461)
.++.|.|.++.+.. +| .+ ..+++|+.|+|.+ .+. +.+...+..++.|+.|+|.+ |...+...-.+ ..++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~--g~iP~~~~~l~~L~~LdLs~--N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSY--NSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCccc--CcCChHHhCCCCCCEEECCC--CCCCCCCchHHhcCCCCC
Confidence 37788888877643 22 33 5788899999987 443 23444477889999999988 64443322222 347888
Q ss_pred eEEEEEEeec
Q 012521 222 RLSISVFVMQ 231 (461)
Q Consensus 222 ~L~l~~~~~~ 231 (461)
.|.+.++...
T Consensus 494 ~L~Ls~N~l~ 503 (623)
T PLN03150 494 ILNLNGNSLS 503 (623)
T ss_pred EEECcCCccc
Confidence 8888877543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.09 E-value=0.36 Score=46.94 Aligned_cols=137 Identities=14% Similarity=0.086 Sum_probs=71.2
Q ss_pred HhcCCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccceeEE-EecCCccEEEEeecccCceEeecCCCe
Q 012521 189 FSSCPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFE-IRTPNLEYLSIIANSLAYFVLDEIPFL 267 (461)
Q Consensus 189 ~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~-~~~p~L~~L~~~~~~~~~~~~~~~~~L 267 (461)
+..|+.++.|.+.+ |. +..+..-.++|++|.+.+|.... .+. .-.++|++|.++++..... -.++|
T Consensus 48 ~~~~~~l~~L~Is~--c~---L~sLP~LP~sLtsL~Lsnc~nLt-----sLP~~LP~nLe~L~Ls~Cs~L~s---LP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKD--CD---IESLPVLPNELTEITIENCNNLT-----TLPGSIPEGLEKLTVCHCPEISG---LPESV 114 (426)
T ss_pred HHHhcCCCEEEeCC--CC---CcccCCCCCCCcEEEccCCCCcc-----cCCchhhhhhhheEccCcccccc---ccccc
Confidence 45578899999988 63 33333334578999888876542 111 2246788888876522111 12345
Q ss_pred eEEEEEEEEceeecCCCCcchhhHHHHhhcC-CCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhH
Q 012521 268 KKAFVLVEFNVLRRNSSGIFENDARSALELV-KRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLL 346 (461)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l 346 (461)
+.+.+..... .. +..+ ++|+.|.+.. ...... ......+| .+|+.|.+..|.....
T Consensus 115 e~L~L~~n~~-----------~~----L~~LPssLk~L~I~~--~n~~~~-~~lp~~LP--sSLk~L~Is~c~~i~L--- 171 (426)
T PRK15386 115 RSLEIKGSAT-----------DS----IKNVPNGLTSLSINS--YNPENQ-ARIDNLIS--PSLKTLSLTGCSNIIL--- 171 (426)
T ss_pred ceEEeCCCCC-----------cc----cccCcchHhheeccc--cccccc-cccccccC--CcccEEEecCCCcccC---
Confidence 5555432111 11 2233 2566777643 110000 00011122 5788888887653211
Q ss_pred HHHHhcC-CCCeeEEEeec
Q 012521 347 TPFLKRS-PSLKVLNLDFS 364 (461)
Q Consensus 347 ~~ll~~~-p~L~~L~l~~~ 364 (461)
.... ++|+.|.+..+
T Consensus 172 ---P~~LP~SLk~L~ls~n 187 (426)
T PRK15386 172 ---PEKLPESLQSITLHIE 187 (426)
T ss_pred ---cccccccCcEEEeccc
Confidence 1112 48888888764
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=88.57 E-value=0.28 Score=53.07 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=32.6
Q ss_pred CCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 145 ETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
...++..+-++.+...+.. ..++.|++|-+.. ...-...-..++...|.|..|+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~ 580 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG 580 (889)
T ss_pred hheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC
Confidence 3456666666555444444 5567787777776 2100122234466677788888776
No 63
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=88.49 E-value=0.03 Score=46.74 Aligned_cols=67 Identities=27% Similarity=0.455 Sum_probs=41.9
Q ss_pred eecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 133 RILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 133 ~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
....+|+.+....+|++|.+.++.+..+|..-+++|.|+.|++.. ... .+..=+.++|.||.|+|.+
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---cCccccCCCchhhhhhccc
Confidence 345556666667777777777777766554326777777777765 221 1112245578888888776
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.15 E-value=0.14 Score=50.40 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=92.9
Q ss_pred ceecccCCcccCCC-CccEEEeceeeeccCC-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCC
Q 012521 132 KRILELPQSILTCE-TLVELKLCSDIVIDIP-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRD 208 (461)
Q Consensus 132 ~~~~~lp~~l~~~~-~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~ 208 (461)
.....+|+.....+ +|++|++.++.+..++ .. ..+++|+.|++.. ... .+.......+.|+.|.+.+ +...
T Consensus 126 n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~---~l~~~~~~~~~L~~L~ls~--N~i~ 199 (394)
T COG4886 126 NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLS---DLPKLLSNLSNLNNLDLSG--NKIS 199 (394)
T ss_pred cccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhh---hhhhhhhhhhhhhheeccC--Cccc
Confidence 35667777766674 9999999999887764 34 6899999999987 332 3333333789999999998 5322
Q ss_pred CeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc--eEeecCCCeeEEEEEEEEceeecCCCCc
Q 012521 209 NVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY--FVLDEIPFLKKAFVLVEFNVLRRNSSGI 286 (461)
Q Consensus 209 ~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~~~~ 286 (461)
.+....-....|++|.+.+..... .....-...++..+.+....... ..++.+++++.+.+......
T Consensus 200 ~l~~~~~~~~~L~~l~~~~N~~~~---~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-------- 268 (394)
T COG4886 200 DLPPEIELLSALEELDLSNNSIIE---LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-------- 268 (394)
T ss_pred cCchhhhhhhhhhhhhhcCCccee---cchhhhhcccccccccCCceeeeccchhccccccceecccccccc--------
Confidence 222111122348888877652110 01122233445555443333222 33455666776666555432
Q ss_pred chhhHHHHhhcCCCceEEEEec
Q 012521 287 FENDARSALELVKRIKSMKILS 308 (461)
Q Consensus 287 ~~~~~~~~l~~~~~l~~L~l~~ 308 (461)
.+.. +....+++.|++++
T Consensus 269 ---~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 269 ---SISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ---cccc-ccccCccCEEeccC
Confidence 2222 66677888888887
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=87.12 E-value=0.77 Score=39.72 Aligned_cols=65 Identities=23% Similarity=0.200 Sum_probs=38.9
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+..++.|.+|.++. +.+..+... .-+.+++|+.|.+..++..+...+.. +..||.|+.|.+-++.
T Consensus 60 lp~l~rL~tLll~n--NrIt~I~p~---L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN--NRITRIDPD---LDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecC--Ccceeeccc---hhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 34456677777776 555433211 12345577777777765433322322 4678999999988876
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.64 E-value=0.43 Score=23.30 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=8.6
Q ss_pred CCccEEEeceeeecc
Q 012521 145 ETLVELKLCSDIVID 159 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~ 159 (461)
++|+.|+|++|.+..
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 367888888877654
No 67
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=85.16 E-value=0.29 Score=52.94 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=62.8
Q ss_pred CCCCccEEEeceee--eccCCC--CccccCCccEEEeeeecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEc-
Q 012521 143 TCETLVELKLCSDI--VIDIPG--SGICFPSLKILHFGFCHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIV- 217 (461)
Q Consensus 143 ~~~~L~~L~L~~~~--l~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~- 217 (461)
.|+.|++|-+.++. +...+. | ..+|.|+.|+|+++.. ...+...++..-+|+.|++.+ +. +..+...-
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff-~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~--t~---I~~LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFF-RSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSD--TG---ISHLPSGLG 615 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHH-hhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccC--CC---ccccchHHH
Confidence 37789999998875 444343 4 6789999999996221 344555577788899999988 42 33322221
Q ss_pred --CCcceEEEEEEeecCcccceeEEEecCCccEEEEeec
Q 012521 218 --QTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIAN 254 (461)
Q Consensus 218 --~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~ 254 (461)
..|..|++....... ....+....++|++|.+...
T Consensus 616 ~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHhhheeccccccccc--cccchhhhcccccEEEeecc
Confidence 456666666544321 01122223567777777543
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.99 E-value=0.76 Score=25.24 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=13.1
Q ss_pred cCCccEEEeee-ecCChhHHHHHH
Q 012521 167 FPSLKILHFGF-CHPDRGLMQKFF 189 (461)
Q Consensus 167 ~~~L~~L~L~~-~~~~~~~l~~l~ 189 (461)
|++|+.|+|.+ ..++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 35666666666 445566665543
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.01 E-value=0.41 Score=48.73 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=38.2
Q ss_pred CCCCCCccCCCCChHHHHHHHcCCCccchhhhcccchhhHHh
Q 012521 8 KDNARGDITSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDL 49 (461)
Q Consensus 8 ~~~~~~D~~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~l 49 (461)
+.....|-++.||-|+..+||++|+.++++.++++|+.|+.+
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 445667999999999999999999999999999999999864
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.78 E-value=0.17 Score=43.61 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=35.2
Q ss_pred ccEEEeceeeecc--CCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 147 LVELKLCSDIVID--IPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 147 L~~L~L~~~~l~~--~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
++.++=+++.+.. +..+ ..++.++.|.+.+ ...+|..+..+-...|+||+|+|++
T Consensus 103 IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsg 160 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSG 160 (221)
T ss_pred EEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccC
Confidence 4555555544422 1122 4566777777877 5556777777777778888888888
No 71
>PLN03150 hypothetical protein; Provisional
Probab=81.88 E-value=0.76 Score=48.14 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=45.9
Q ss_pred CccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE-EEEEcCCcceEEEEEEeecCcccceeEEEecCCc
Q 012521 169 SLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT-INIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNL 246 (461)
Q Consensus 169 ~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~-~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L 246 (461)
.++.|+|.+ .+. ..+..-+..++.|+.|+|.+ |...+.-. ..-..++|+.|.++++...+. .....-..++|
T Consensus 419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~--N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~--iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSG--NSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCC--CcccCcCChHHhCCCCCCEEECCCCCCCCC--CchHHhcCCCC
Confidence 366777776 332 22233466778888888887 54332211 112337788888877654421 11122356778
Q ss_pred cEEEEeecc
Q 012521 247 EYLSIIANS 255 (461)
Q Consensus 247 ~~L~~~~~~ 255 (461)
+.|+++++.
T Consensus 493 ~~L~Ls~N~ 501 (623)
T PLN03150 493 RILNLNGNS 501 (623)
T ss_pred CEEECcCCc
Confidence 888887654
No 72
>PF13013 F-box-like_2: F-box-like domain
Probab=81.52 E-value=0.81 Score=35.49 Aligned_cols=30 Identities=17% Similarity=0.005 Sum_probs=27.2
Q ss_pred cCCCCChHHHHHHHcCCCccchhhhcccch
Q 012521 15 ITSRLPDHLLCRILSCLPTEDAVRTCILSS 44 (461)
Q Consensus 15 ~~s~LPd~vl~~Ils~Lp~~~~~~~s~vsr 44 (461)
.+.+||+||+..|+.+-...+....+..++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 488999999999999999999988888876
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.60 E-value=2.2 Score=38.78 Aligned_cols=201 Identities=17% Similarity=0.128 Sum_probs=107.5
Q ss_pred CCCccEEEeceeeeccCC--CCc---cccCCccEEEeeeecCC---hh------HHHHHHhcCCccCeEEEeeeecCCCC
Q 012521 144 CETLVELKLCSDIVIDIP--GSG---ICFPSLKILHFGFCHPD---RG------LMQKFFSSCPTLEELTIEGILHPRDN 209 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~--~~~---~~~~~L~~L~L~~~~~~---~~------~l~~l~~~cp~Le~L~L~~~~c~~~~ 209 (461)
...++.+.|+|+.+..-. ..+ ++-++|+..+++..|.+ ++ .+-..+..||.|+..+|++ +. -+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD--NA-fg 105 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD--NA-FG 105 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc--cc-cC
Confidence 578899999998874311 110 33467777777764431 11 2334567899999999988 42 12
Q ss_pred eeEE------EEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCC
Q 012521 210 VQTI------NIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNS 283 (461)
Q Consensus 210 ~~~~------~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~ 283 (461)
.... --++..|++|.+.+|..... ..-.+ ...|..|.+.. ...+-|.|+.....-... +++
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~---aG~ri-gkal~~la~nK------Kaa~kp~Le~vicgrNRl---eng 172 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPI---AGGRI-GKALFHLAYNK------KAADKPKLEVVICGRNRL---ENG 172 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCcc---chhHH-HHHHHHHHHHh------hhccCCCceEEEeccchh---ccC
Confidence 2211 12345677777776654311 10001 11122222111 123345555443322211 111
Q ss_pred CCcchhhHHHHhhcCCCceEEEEecCCChHHH--hhhhccCCCCCCCccceEEEEeccC--CChhhHHHHHhcCCCCeeE
Q 012521 284 SGIFENDARSALELVKRIKSMKILSLPDSMTV--LSFVLNNNLPTFSNLISLELHIDSC--FGWKLLTPFLKRSPSLKVL 359 (461)
Q Consensus 284 ~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--l~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L 359 (461)
. .......+.+-.+++.+.+.. +.+.- +......-+..+.+|+.|+|..+.. .....+...+..+|.|+.|
T Consensus 173 s---~~~~a~~l~sh~~lk~vki~q--NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 173 S---KELSAALLESHENLKEVKIQQ--NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred c---HHHHHHHHHhhcCceeEEeee--cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 1 022334455556788888876 44421 1111122234667888899888743 2344577778889999999
Q ss_pred EEeecc
Q 012521 360 NLDFSK 365 (461)
Q Consensus 360 ~l~~~~ 365 (461)
.+..|.
T Consensus 248 ~lnDCl 253 (388)
T COG5238 248 RLNDCL 253 (388)
T ss_pred cccchh
Confidence 998887
No 74
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=78.61 E-value=0.7 Score=44.07 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=42.4
Q ss_pred cCCcccC-CCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 137 LPQSILT-CETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 137 lp~~l~~-~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
-|...|. .++|+.|+|+++.++.+. .| .+...|++|.|.. ... ..-..++.+...|+.|+|.+
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N~l~--~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRNKLE--FVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcchHH--HHHHHhhhccccceeeeecC
Confidence 3333344 788888889888876654 33 5677888888876 322 22235667778888888877
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.36 E-value=1.3 Score=39.90 Aligned_cols=46 Identities=33% Similarity=0.320 Sum_probs=33.8
Q ss_pred cCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccc
Q 012521 321 NNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKA 366 (461)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 366 (461)
...+|.+++|+.|.++.+.......+.-+..+||+|+.|.++++..
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3457788888888888775434445666677889999998888774
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=76.24 E-value=1.8 Score=22.65 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=12.3
Q ss_pred CccEEEeceeeeccCC
Q 012521 146 TLVELKLCSDIVIDIP 161 (461)
Q Consensus 146 ~L~~L~L~~~~l~~~~ 161 (461)
+|++|+|++|.+..+|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 5788999988876544
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=69.63 E-value=1.6 Score=43.22 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCCCccEEEeceeeeccCCC-CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCc
Q 012521 143 TCETLVELKLCSDIVIDIPG-SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTL 220 (461)
Q Consensus 143 ~~~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL 220 (461)
.+.+|+.|.+.++.+..+.. . .++++|++|+|++ ...+-.++ ..++.|+.|++.+ +....+..+.. .++|
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~--N~i~~~~~~~~-l~~L 164 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSG--NLISDISGLES-LKSL 164 (414)
T ss_pred cccceeeeeccccchhhcccch-hhhhcchheeccccccccccch----hhccchhhheecc--CcchhccCCcc-chhh
Confidence 35677777777777766555 4 6677777777777 33333333 3345577777777 53332222211 4556
Q ss_pred ceEEEEEEeecCcccceeE-EEecCCccEEEEeec
Q 012521 221 KRLSISVFVMQGYVSKRIF-EIRTPNLEYLSIIAN 254 (461)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~-~~~~p~L~~L~~~~~ 254 (461)
+.+.+.++..... +.. ....++++.+.+.++
T Consensus 165 ~~l~l~~n~i~~i---e~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 165 KLLDLSYNRIVDI---ENDELSELISLEELDLGGN 196 (414)
T ss_pred hcccCCcchhhhh---hhhhhhhccchHHHhccCC
Confidence 6666655543311 110 133455555555544
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.25 E-value=4.2 Score=21.62 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=5.3
Q ss_pred CCccEEEeceeee
Q 012521 145 ETLVELKLCSDIV 157 (461)
Q Consensus 145 ~~L~~L~L~~~~l 157 (461)
++|++|+|++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4455555554444
No 79
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=58.56 E-value=3.3 Score=37.28 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=40.7
Q ss_pred CCccCCCCChHHHHHHHcCCC-ccchhhhcccchhh------HHhhcccceeeecCCC
Q 012521 12 RGDITSRLPDHLLCRILSCLP-TEDAVRTCILSSRW------RDLWTSIHGLYFDGGN 62 (461)
Q Consensus 12 ~~D~~s~LPd~vl~~Ils~Lp-~~~~~~~s~vsrrW------r~lw~~~~~l~~~~~~ 62 (461)
..--+.+||.|++..|+.+|| -+|+..++.+-..- +.+|+.+..+.|....
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQ 255 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQ 255 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344689999999999999998 89999998874333 4678888878887655
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.92 E-value=7.3 Score=33.89 Aligned_cols=39 Identities=18% Similarity=-0.026 Sum_probs=23.5
Q ss_pred CCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 326 TFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.+++|+.|+|++|.+++..++..+ ...++|+.|.|....
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDLP 187 (221)
T ss_pred cccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCch
Confidence 455666666666666565555543 445666666666654
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=55.07 E-value=3.7 Score=40.66 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=51.6
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEE-EEEcC
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTI-NIIVQ 218 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~-~i~~~ 218 (461)
+-.+++|++|+|+++.+..+... ..++.|+.|++.+ ...+...+ ..++.|+.+++.+ +....+... .....
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l-~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l~~--n~i~~ie~~~~~~~~ 186 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGL-STLTLLKELNLSGNLISDISGL----ESLKSLKLLDLSY--NRIVDIENDELSELI 186 (414)
T ss_pred hhhhhcchheeccccccccccch-hhccchhhheeccCcchhccCC----ccchhhhcccCCc--chhhhhhhhhhhhcc
Confidence 44588888888888888776666 6777788888887 44433333 2367788888877 543333321 12235
Q ss_pred CcceEEEEEEe
Q 012521 219 TLKRLSISVFV 229 (461)
Q Consensus 219 sL~~L~l~~~~ 229 (461)
+++.+.+.++.
T Consensus 187 ~l~~l~l~~n~ 197 (414)
T KOG0531|consen 187 SLEELDLGGNS 197 (414)
T ss_pred chHHHhccCCc
Confidence 66666666543
No 82
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=45.31 E-value=13 Score=28.19 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.1
Q ss_pred ccCCCCChHHHHHHHcCCCccchhh
Q 012521 14 DITSRLPDHLLCRILSCLPTEDAVR 38 (461)
Q Consensus 14 D~~s~LPd~vl~~Ils~Lp~~~~~~ 38 (461)
..++.||.|+-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6788999999999999999888753
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=44.62 E-value=30 Score=27.28 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=28.2
Q ss_pred cCCcccC-CCCccEEEeceeeeccC--CCCccccCCccEEEeeeecCChhHHHHHHhcCCccCeEEEee
Q 012521 137 LPQSILT-CETLVELKLCSDIVIDI--PGSGICFPSLKILHFGFCHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 137 lp~~l~~-~~~L~~L~L~~~~l~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
++..+|. |.+|+.+.+... +..+ ..+ .++++|+.+.+......-+ ...+.+|+.|+.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~~-~~~I~~~~F-~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNT-IKKIGENAF-SNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFPN 67 (129)
T ss_dssp E-TTTTTT-TT--EEEETST---EE-TTTT-TT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETS
T ss_pred ECHHHHhCCCCCCEEEECCC-eeEeChhhc-ccccccccccccccccccc--eeeeecccccccccccc
Confidence 3444555 778888887642 2221 234 5677788888765211111 12366677777777754
No 84
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=43.91 E-value=7.9 Score=40.39 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=32.7
Q ss_pred ccCCCCccEEEeceeeeccCCCCc-cccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSG-ICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
+..|+.|++|+|+.+.+..+|.++ .+|. |..|.|.+ ...+-.+++ +..+|+.|++.+
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie----~LksL~~LDlsy 263 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIE----NLKSLYGLDLSY 263 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHH----hhhhhhccchhH
Confidence 344777777777777666655442 4444 77777776 333333333 345566666655
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=42.94 E-value=16 Score=19.63 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=12.6
Q ss_pred CCccEEEeceeeeccCCC
Q 012521 145 ETLVELKLCSDIVIDIPG 162 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~ 162 (461)
++|++|+|.+|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 467888888877766553
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=42.94 E-value=16 Score=19.63 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=12.6
Q ss_pred CCccEEEeceeeeccCCC
Q 012521 145 ETLVELKLCSDIVIDIPG 162 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~ 162 (461)
++|++|+|.+|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 467888888877766553
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=39.08 E-value=8.2 Score=31.48 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=29.9
Q ss_pred CCCccEEEeceeeeccCC-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 144 CETLVELKLCSDIVIDIP-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
-.+|+..+|+++.++..| .+..-||.+++|+|.+ ... .+..=+...|.|+.|++.+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis---dvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS---DVPEELAAMPALRSLNLRF 109 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh---hchHHHhhhHHhhhccccc
Confidence 344555666666665444 3323455666666665 222 1111155567777777766
No 88
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=35.02 E-value=11 Score=35.24 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCCCChHHHHHHHcCCCccchhhhcccchhhHHhhcccc
Q 012521 16 TSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDLWTSIH 54 (461)
Q Consensus 16 ~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~lw~~~~ 54 (461)
+..+|++++++|++++..+++.++|.+|+|-..+-...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 557899999999999999999999999999987644444
No 89
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=31.96 E-value=12 Score=30.61 Aligned_cols=43 Identities=23% Similarity=0.481 Sum_probs=26.9
Q ss_pred ecccCCcccC-CCCccEEEeceeeeccCC-CCccccCCccEEEeee
Q 012521 134 ILELPQSILT-CETLVELKLCSDIVIDIP-GSGICFPSLKILHFGF 177 (461)
Q Consensus 134 ~~~lp~~l~~-~~~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~L~~ 177 (461)
.-.+|..+.. -+.++.|+|.++.+.++| .+ +.+|.|+.|++..
T Consensus 65 fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 65 FKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRF 109 (177)
T ss_pred hhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhccccc
Confidence 3445554433 456777777777766555 44 6677777777776
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=31.36 E-value=47 Score=18.38 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=11.0
Q ss_pred CCccEEEeeeecCChhHHHHH
Q 012521 168 PSLKILHFGFCHPDRGLMQKF 188 (461)
Q Consensus 168 ~~L~~L~L~~~~~~~~~l~~l 188 (461)
++|++|+|.+...++++...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 456666666633334444443
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=23.52 E-value=44 Score=18.45 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=14.1
Q ss_pred CCccEEEeceeeeccCCCC
Q 012521 145 ETLVELKLCSDIVIDIPGS 163 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~~ 163 (461)
++|++|.++++.+..+|..
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4688888888888776653
Done!