Query 012521
Match_columns 461
No_of_seqs 183 out of 1908
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 9.6E-22 3.3E-26 202.8 10.9 335 13-363 3-441 (594)
2 3ogk_B Coronatine-insensitive 99.8 1.9E-21 6.5E-26 200.5 7.2 387 13-435 6-474 (592)
3 2ast_B S-phase kinase-associat 99.8 4E-20 1.4E-24 176.7 4.7 38 13-50 6-43 (336)
4 4fcg_A Uncharacterized protein 99.2 1.1E-11 3.8E-16 117.5 4.1 84 109-206 77-161 (328)
5 4fmz_A Internalin; leucine ric 99.1 1.6E-11 5.6E-16 117.3 2.9 190 141-365 84-276 (347)
6 4fmz_A Internalin; leucine ric 99.1 1.3E-11 4.4E-16 118.0 1.8 209 113-365 44-254 (347)
7 2z80_A TOLL-like receptor 2, v 99.1 2.7E-10 9.1E-15 109.2 10.7 263 113-423 52-330 (353)
8 3ogk_B Coronatine-insensitive 99.1 7E-10 2.4E-14 113.9 12.1 71 290-365 454-524 (592)
9 1o6v_A Internalin A; bacterial 99.0 1.2E-10 3.9E-15 116.1 5.4 104 295-435 217-320 (466)
10 1o6v_A Internalin A; bacterial 99.0 1.3E-10 4.5E-15 115.7 3.5 233 141-435 108-342 (466)
11 2p1m_B Transport inhibitor res 99.0 5.7E-11 1.9E-15 122.1 0.7 234 166-432 287-539 (594)
12 2z66_A Variable lymphocyte rec 99.0 8.8E-11 3E-15 110.1 0.5 211 133-365 18-234 (306)
13 4fcg_A Uncharacterized protein 98.9 3.9E-10 1.3E-14 106.8 4.6 199 144-365 80-288 (328)
14 3o6n_A APL1; leucine-rich repe 98.9 1.4E-10 5E-15 112.6 1.3 63 295-365 244-306 (390)
15 3o53_A Protein LRIM1, AGAP0063 98.9 2.2E-11 7.5E-16 114.9 -4.5 187 144-365 33-225 (317)
16 3oja_A Leucine-rich immune mol 98.9 3.7E-11 1.3E-15 120.2 -3.4 187 144-365 33-225 (487)
17 3t6q_A CD180 antigen; protein- 98.9 1.6E-11 5.6E-16 126.5 -7.4 57 144-202 277-334 (606)
18 3o6n_A APL1; leucine-rich repe 98.9 7.9E-10 2.7E-14 107.4 4.6 124 218-365 205-329 (390)
19 1h6u_A Internalin H; cell adhe 98.9 1.5E-10 5.3E-15 108.6 -0.7 169 141-365 59-228 (308)
20 2id5_A Lingo-1, leucine rich r 98.9 4.2E-10 1.4E-14 112.4 2.1 212 140-365 75-307 (477)
21 2ca6_A RAN GTPase-activating p 98.9 3.6E-10 1.2E-14 109.6 1.1 71 293-365 181-255 (386)
22 3oja_B Anopheles plasmodium-re 98.9 4.3E-10 1.5E-14 115.6 1.5 62 295-365 274-335 (597)
23 3bz5_A Internalin-J, INLJ; leu 98.8 8.1E-10 2.8E-14 109.5 2.5 55 141-202 60-115 (457)
24 1z7x_W Ribonuclease inhibitor; 98.8 4.6E-11 1.6E-15 118.8 -6.5 72 291-365 219-295 (461)
25 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2.1E-09 7E-14 71.7 3.5 39 12-50 5-43 (53)
26 3g06_A SSPH2 (leucine-rich rep 98.8 3.8E-09 1.3E-13 108.2 7.2 30 145-177 61-90 (622)
27 2ast_B S-phase kinase-associat 98.8 2.9E-10 9.8E-15 108.0 -1.3 68 291-364 214-282 (336)
28 3oja_B Anopheles plasmodium-re 98.8 1.4E-09 4.9E-14 111.7 3.8 65 136-202 113-180 (597)
29 2z80_A TOLL-like receptor 2, v 98.8 6.6E-09 2.3E-13 99.4 8.1 187 134-365 43-233 (353)
30 2z63_A TOLL-like receptor 4, v 98.8 1.8E-09 6.1E-14 110.3 4.1 65 295-365 441-505 (570)
31 2id5_A Lingo-1, leucine rich r 98.8 6E-10 2.1E-14 111.3 0.2 200 142-365 125-331 (477)
32 3vq2_A TLR4, TOLL-like recepto 98.8 1.7E-10 5.9E-15 118.8 -4.3 125 141-275 281-409 (606)
33 3zyi_A Leucine-rich repeat-con 98.8 2.7E-10 9.3E-15 113.0 -3.0 198 141-365 95-301 (452)
34 3v47_A TOLL-like receptor 5B a 98.8 1.4E-10 4.7E-15 115.1 -5.1 85 142-229 76-165 (455)
35 2z63_A TOLL-like receptor 4, v 98.8 3.6E-10 1.2E-14 115.4 -2.2 251 137-435 274-529 (570)
36 3v47_A TOLL-like receptor 5B a 98.8 3.3E-10 1.1E-14 112.3 -2.6 80 113-202 79-163 (455)
37 1z7x_W Ribonuclease inhibitor; 98.8 1.4E-10 4.8E-15 115.3 -5.6 220 136-365 104-352 (461)
38 3rgz_A Protein brassinosteroid 98.8 8.1E-11 2.8E-15 124.6 -7.9 155 136-308 91-256 (768)
39 2z81_A CD282 antigen, TOLL-lik 98.8 1.1E-08 3.7E-13 104.0 8.0 70 295-366 330-399 (549)
40 3bz5_A Internalin-J, INLJ; leu 98.7 1.1E-09 3.9E-14 108.4 0.5 140 141-308 38-179 (457)
41 2z7x_B TOLL-like receptor 1, v 98.7 3.1E-09 1.1E-13 107.3 3.7 73 113-202 69-147 (520)
42 2z81_A CD282 antigen, TOLL-lik 98.7 1.6E-08 5.3E-13 102.8 8.7 226 113-365 26-262 (549)
43 3vq2_A TLR4, TOLL-like recepto 98.7 2.9E-10 1E-14 117.1 -4.2 213 113-365 285-508 (606)
44 4eco_A Uncharacterized protein 98.7 8.9E-10 3.1E-14 114.0 -0.7 206 137-366 239-469 (636)
45 3t6q_A CD180 antigen; protein- 98.7 6.1E-10 2.1E-14 114.7 -2.2 211 135-365 291-511 (606)
46 3zyj_A Leucine-rich repeat-con 98.7 3.8E-10 1.3E-14 111.5 -3.8 201 142-365 85-290 (440)
47 1xku_A Decorin; proteoglycan, 98.7 1.2E-09 4E-14 103.6 -1.4 217 113-365 76-304 (330)
48 3rgz_A Protein brassinosteroid 98.7 3.1E-10 1.1E-14 120.1 -6.5 151 244-435 394-549 (768)
49 4ecn_A Leucine-rich repeat pro 98.7 1.8E-09 6.2E-14 114.5 -1.0 209 137-366 481-709 (876)
50 1xku_A Decorin; proteoglycan, 98.7 2.6E-09 8.7E-14 101.2 -0.0 199 141-365 72-274 (330)
51 2ca6_A RAN GTPase-activating p 98.7 4.4E-10 1.5E-14 109.1 -5.5 188 166-365 92-314 (386)
52 1ozn_A Reticulon 4 receptor; N 98.7 8.2E-10 2.8E-14 102.4 -3.6 106 243-365 128-236 (285)
53 4ecn_A Leucine-rich repeat pro 98.6 7.5E-10 2.6E-14 117.4 -4.6 224 114-364 549-786 (876)
54 3j0a_A TOLL-like receptor 5; m 98.6 2.5E-08 8.6E-13 106.7 7.1 105 244-365 266-373 (844)
55 2z7x_B TOLL-like receptor 1, v 98.6 4.2E-08 1.4E-12 99.0 7.6 39 395-435 347-385 (520)
56 1h6t_A Internalin B; cell adhe 98.6 1.1E-08 3.6E-13 95.1 2.5 60 295-365 152-211 (291)
57 1h6u_A Internalin H; cell adhe 98.6 9.4E-09 3.2E-13 96.3 2.1 165 113-339 63-228 (308)
58 1ziw_A TOLL-like receptor 3; i 98.6 2.4E-09 8.3E-14 111.8 -2.8 36 396-435 536-571 (680)
59 2ft3_A Biglycan; proteoglycan, 98.6 6.9E-10 2.4E-14 105.3 -6.5 63 295-365 213-275 (332)
60 1ogq_A PGIP-2, polygalacturona 98.6 5.9E-09 2E-13 97.9 -0.1 200 113-365 76-279 (313)
61 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 2.9E-08 9.8E-13 101.2 4.8 59 136-202 114-178 (562)
62 3j0a_A TOLL-like receptor 5; m 98.6 3.9E-08 1.3E-12 105.1 6.0 56 144-202 289-347 (844)
63 3o53_A Protein LRIM1, AGAP0063 98.6 3.2E-09 1.1E-13 100.0 -2.2 120 141-274 54-178 (317)
64 2ft3_A Biglycan; proteoglycan, 98.6 1.6E-09 5.6E-14 102.7 -4.5 217 113-365 78-305 (332)
65 3goz_A Leucine-rich repeat-con 98.6 6E-09 2E-13 100.1 -0.6 74 290-365 186-264 (362)
66 3oja_A Leucine-rich immune mol 98.6 3E-09 1E-13 106.3 -2.8 191 140-365 53-248 (487)
67 4eco_A Uncharacterized protein 98.5 1.6E-09 5.3E-14 112.2 -5.8 224 113-364 305-546 (636)
68 3rfs_A Internalin B, repeat mo 98.5 1.7E-08 6E-13 92.7 0.6 122 144-274 40-166 (272)
69 3g06_A SSPH2 (leucine-rich rep 98.5 9.3E-08 3.2E-12 97.9 5.6 128 113-273 61-189 (622)
70 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 6E-07 2.1E-11 91.4 11.5 78 113-202 76-155 (562)
71 1m9s_A Internalin B; cell inva 98.5 1.8E-08 6.3E-13 102.9 0.1 56 142-202 62-118 (605)
72 4ezg_A Putative uncharacterize 98.5 1.4E-07 4.6E-12 82.1 5.6 148 144-365 43-192 (197)
73 3zyi_A Leucine-rich repeat-con 98.5 1.2E-08 4.1E-13 101.1 -1.5 191 113-338 99-300 (452)
74 2o6q_A Variable lymphocyte rec 98.5 2.7E-08 9.4E-13 91.2 1.0 183 136-365 30-216 (270)
75 3zyj_A Leucine-rich repeat-con 98.4 1.5E-08 5.3E-13 99.9 -1.2 191 113-338 88-289 (440)
76 2ra8_A Uncharacterized protein 98.4 6.4E-08 2.2E-12 92.3 2.7 169 165-365 136-318 (362)
77 2z66_A Variable lymphocyte rec 98.4 6.2E-09 2.1E-13 97.4 -4.9 193 148-365 10-210 (306)
78 1wwl_A Monocyte differentiatio 98.4 4.5E-08 1.5E-12 91.9 0.9 60 143-202 93-158 (312)
79 1p9a_G Platelet glycoprotein I 98.4 1.5E-08 5.1E-13 94.1 -2.8 63 295-365 144-206 (290)
80 3rfs_A Internalin B, repeat mo 98.4 9.7E-09 3.3E-13 94.4 -4.0 174 140-365 58-233 (272)
81 2z62_A TOLL-like receptor 4, v 98.4 6.4E-08 2.2E-12 89.0 1.4 108 243-365 123-235 (276)
82 1ozn_A Reticulon 4 receptor; N 98.4 8.9E-09 3E-13 95.3 -4.8 183 136-339 46-236 (285)
83 1xeu_A Internalin C; cellular 98.3 1.4E-07 4.6E-12 86.2 2.7 78 143-229 39-117 (263)
84 2xwt_C Thyrotropin receptor; s 98.3 1.9E-07 6.4E-12 83.9 3.0 172 145-365 31-216 (239)
85 1h6t_A Internalin B; cell adhe 98.3 3.4E-07 1.2E-11 84.9 4.2 147 141-339 64-211 (291)
86 1ogq_A PGIP-2, polygalacturona 98.3 2.2E-08 7.7E-13 94.0 -4.5 223 83-365 76-302 (313)
87 3goz_A Leucine-rich repeat-con 98.3 6.9E-08 2.3E-12 92.6 -1.6 73 291-365 216-295 (362)
88 1ziw_A TOLL-like receptor 3; i 98.3 9E-08 3.1E-12 99.9 -1.0 59 142-202 118-180 (680)
89 1wwl_A Monocyte differentiatio 98.2 7.3E-08 2.5E-12 90.4 -1.8 200 112-365 94-307 (312)
90 4glp_A Monocyte differentiatio 98.2 8.7E-08 3E-12 89.8 -2.0 227 84-365 65-305 (310)
91 2o6q_A Variable lymphocyte rec 98.2 2.3E-07 7.9E-12 85.0 0.8 175 113-338 37-215 (270)
92 2z62_A TOLL-like receptor 4, v 98.2 3.4E-08 1.2E-12 90.9 -4.8 134 134-308 19-158 (276)
93 1jl5_A Outer protein YOPM; leu 98.2 5.7E-07 1.9E-11 88.9 3.6 102 137-255 146-248 (454)
94 2xwt_C Thyrotropin receptor; s 98.2 3E-07 1E-11 82.5 0.7 124 113-255 31-167 (239)
95 4ezg_A Putative uncharacterize 98.2 1.9E-07 6.5E-12 81.2 -0.7 59 141-202 62-121 (197)
96 3e4g_A ATP synthase subunit S, 98.2 5.3E-07 1.8E-11 75.8 1.8 94 133-230 49-151 (176)
97 1m9s_A Internalin B; cell inva 98.1 3.7E-07 1.3E-11 93.3 0.2 99 144-254 42-141 (605)
98 3cvr_A Invasion plasmid antige 98.1 6.1E-07 2.1E-11 90.8 1.8 130 113-274 59-189 (571)
99 1xeu_A Internalin C; cellular 98.1 1.5E-07 5E-12 86.0 -2.6 116 144-272 18-135 (263)
100 1jl5_A Outer protein YOPM; leu 98.1 1.7E-06 5.7E-11 85.5 4.6 51 299-365 317-368 (454)
101 4glp_A Monocyte differentiatio 98.1 1.9E-07 6.6E-12 87.4 -2.4 187 144-365 90-283 (310)
102 3m19_A Variable lymphocyte rec 98.1 8.2E-07 2.8E-11 80.3 1.6 64 134-202 26-92 (251)
103 2ell_A Acidic leucine-rich nuc 98.1 4.6E-07 1.6E-11 76.5 -0.3 130 113-254 24-157 (168)
104 1p9a_G Platelet glycoprotein I 98.0 2.5E-07 8.7E-12 85.7 -3.3 169 145-338 31-205 (290)
105 2e31_A FBS1, F-box only protei 98.0 3.1E-06 1.1E-10 77.0 3.5 36 14-49 49-85 (297)
106 2je0_A Acidic leucine-rich nuc 97.9 5.1E-07 1.8E-11 74.5 -2.8 105 113-229 17-124 (149)
107 3l2o_B F-box only protein 4; s 97.9 2.2E-06 7.5E-11 77.0 0.4 35 15-49 4-38 (312)
108 4ay9_X Follicle-stimulating ho 97.8 9.2E-06 3.1E-10 77.3 3.4 89 134-230 21-116 (350)
109 2ell_A Acidic leucine-rich nuc 97.8 3.4E-06 1.2E-10 71.0 0.2 80 144-229 23-106 (168)
110 4g8a_A TOLL-like receptor 4; l 97.8 1.6E-05 5.6E-10 81.7 5.2 91 134-229 64-159 (635)
111 1ds9_A Outer arm dynein; leuci 97.7 3.4E-06 1.2E-10 73.2 -0.5 63 136-202 39-102 (198)
112 3m19_A Variable lymphocyte rec 97.7 7E-06 2.4E-10 74.1 1.5 64 136-202 49-116 (251)
113 3cvr_A Invasion plasmid antige 97.7 1.2E-05 4E-10 81.4 3.3 113 113-257 80-193 (571)
114 2je0_A Acidic leucine-rich nuc 97.7 2E-06 6.7E-11 70.9 -2.6 80 144-229 16-99 (149)
115 2o6s_A Variable lymphocyte rec 97.7 2.8E-06 9.6E-11 74.3 -2.0 64 134-202 19-85 (208)
116 4g8a_A TOLL-like receptor 4; l 97.7 2.5E-06 8.5E-11 87.9 -3.1 106 295-424 490-597 (635)
117 3un9_A NLR family member X1; l 97.7 3.7E-06 1.3E-10 80.6 -1.7 74 290-365 174-250 (372)
118 4ay9_X Follicle-stimulating ho 97.6 3E-06 1E-10 80.7 -2.5 213 113-364 30-256 (350)
119 2ra8_A Uncharacterized protein 97.6 0.00011 3.6E-09 70.0 7.4 130 69-202 93-228 (362)
120 1a9n_A U2A', U2A'; complex (nu 97.6 8E-06 2.7E-10 69.3 -0.4 57 142-202 16-73 (176)
121 3v7d_B Cell division control p 97.5 2.2E-05 7.6E-10 77.3 1.2 40 10-49 9-48 (464)
122 2v9t_B SLIT homolog 2 protein 97.5 3.3E-05 1.1E-09 68.1 2.0 64 134-202 23-89 (220)
123 2xot_A Amphoterin-induced prot 97.4 3.7E-05 1.3E-09 73.4 1.6 64 135-202 31-97 (361)
124 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.0001 3.6E-09 72.1 3.9 41 9-49 12-52 (445)
125 3e6j_A Variable lymphocyte rec 97.3 2.5E-05 8.5E-10 69.4 -0.7 89 134-229 31-123 (229)
126 3e6j_A Variable lymphocyte rec 97.3 2.2E-05 7.6E-10 69.7 -1.4 79 113-202 40-121 (229)
127 2v70_A SLIT-2, SLIT homolog 2 97.3 2.6E-05 8.9E-10 68.8 -1.0 54 146-202 33-90 (220)
128 2o6s_A Variable lymphocyte rec 97.3 3.1E-05 1.1E-09 67.5 -0.7 79 113-202 28-109 (208)
129 1a9n_A U2A', U2A'; complex (nu 97.3 1.5E-05 5.1E-10 67.6 -2.8 56 144-202 41-97 (176)
130 4fdw_A Leucine rich hypothetic 97.2 5.9E-05 2E-09 73.0 0.5 63 136-202 170-235 (401)
131 3e4g_A ATP synthase subunit S, 97.2 0.00048 1.6E-08 57.7 5.8 12 353-364 138-149 (176)
132 1p22_A F-BOX/WD-repeat protein 97.2 7.5E-05 2.6E-09 73.0 0.8 39 11-49 6-48 (435)
133 2v9t_B SLIT homolog 2 protein 97.2 3.9E-05 1.3E-09 67.7 -1.3 78 113-202 32-113 (220)
134 2v70_A SLIT-2, SLIT homolog 2 97.1 3.8E-05 1.3E-09 67.7 -1.7 62 141-207 53-117 (220)
135 3sb4_A Hypothetical leucine ri 97.1 0.00029 9.9E-09 66.2 3.7 61 295-364 246-307 (329)
136 2xot_A Amphoterin-induced prot 96.9 0.00018 6.1E-09 68.6 0.9 118 134-256 51-175 (361)
137 1dce_A Protein (RAB geranylger 96.9 0.00011 3.7E-09 74.5 -0.8 75 146-228 442-518 (567)
138 1w8a_A SLIT protein; signaling 96.9 0.00011 3.8E-09 63.2 -1.1 64 134-202 20-87 (192)
139 1dce_A Protein (RAB geranylger 96.7 0.00028 9.7E-09 71.4 0.3 101 113-229 441-544 (567)
140 2wfh_A SLIT homolog 2 protein 96.7 0.00037 1.3E-08 59.9 0.9 12 243-254 125-136 (193)
141 2wfh_A SLIT homolog 2 protein 96.6 0.00017 5.8E-09 62.1 -1.7 113 134-277 22-138 (193)
142 2o6r_A Variable lymphocyte rec 96.6 0.0005 1.7E-08 58.1 1.2 105 145-255 28-135 (177)
143 2o6r_A Variable lymphocyte rec 96.6 0.00024 8.2E-09 60.0 -0.9 34 144-177 51-85 (177)
144 1ds9_A Outer arm dynein; leuci 96.2 0.0021 7E-08 55.3 3.0 103 112-230 47-152 (198)
145 2r9u_A Variable lymphocyte rec 96.1 0.0012 4E-08 55.6 0.8 64 134-202 24-90 (174)
146 3g39_A Variable lymphocyte rec 96.0 0.0012 4.2E-08 55.3 0.5 64 134-202 21-87 (170)
147 1w8a_A SLIT protein; signaling 96.0 0.0011 3.7E-08 56.9 -0.0 77 114-202 30-111 (192)
148 2ifg_A High affinity nerve gro 95.9 0.0014 5E-08 61.8 0.1 90 134-229 21-114 (347)
149 3un9_A NLR family member X1; l 95.8 0.0027 9.1E-08 60.6 1.7 140 218-365 72-222 (372)
150 4b8c_D Glucose-repressible alc 95.8 0.00082 2.8E-08 70.2 -2.0 90 135-229 237-327 (727)
151 2r9u_A Variable lymphocyte rec 95.7 0.0069 2.4E-07 50.8 3.7 79 113-202 33-114 (174)
152 4b8c_D Glucose-repressible alc 95.6 0.00063 2.1E-08 71.1 -3.8 111 138-256 217-328 (727)
153 3g39_A Variable lymphocyte rec 95.6 0.0082 2.8E-07 50.1 3.7 79 113-202 30-111 (170)
154 1io0_A Tropomodulin; LRR prote 95.6 0.009 3.1E-07 50.7 4.0 72 292-365 86-162 (185)
155 3sb4_A Hypothetical leucine ri 95.5 0.0014 4.6E-08 61.5 -1.6 124 217-361 201-328 (329)
156 1io0_A Tropomodulin; LRR prote 94.8 0.0075 2.6E-07 51.2 1.2 131 289-435 26-162 (185)
157 3rw6_A Nuclear RNA export fact 93.3 0.022 7.6E-07 51.2 1.1 63 137-200 188-258 (267)
158 4fdw_A Leucine rich hypothetic 93.1 0.014 4.9E-07 56.1 -0.5 182 133-365 191-381 (401)
159 3rw6_A Nuclear RNA export fact 91.6 0.071 2.4E-06 47.9 2.1 64 293-361 190-258 (267)
160 2ifg_A High affinity nerve gro 90.4 0.087 3E-06 49.3 1.6 65 135-202 45-112 (347)
161 4gt6_A Cell surface protein; l 77.8 0.53 1.8E-05 44.8 0.5 53 243-308 333-387 (394)
162 4gt6_A Cell surface protein; l 77.5 3.5 0.00012 39.0 6.2 80 136-227 278-366 (394)
163 4fs7_A Uncharacterized protein 74.0 1.4 4.9E-05 41.7 2.4 122 136-273 243-374 (394)
164 4h09_A Hypothetical leucine ri 69.6 2.7 9.4E-05 39.4 3.3 63 135-202 252-319 (379)
165 1pgv_A TMD-1, tropomodulin TMD 68.5 2.4 8.3E-05 35.8 2.3 128 289-435 31-168 (197)
166 4fs7_A Uncharacterized protein 65.1 4.9 0.00017 38.0 4.0 79 137-226 288-374 (394)
167 1pgv_A TMD-1, tropomodulin TMD 64.2 1.7 5.9E-05 36.7 0.6 99 100-202 26-135 (197)
168 3rfe_A Platelet glycoprotein I 63.0 5.5 0.00019 31.0 3.3 43 136-180 24-68 (130)
169 4h09_A Hypothetical leucine ri 29.1 62 0.0021 29.8 5.2 81 135-225 229-317 (379)
170 2lz0_A Uncharacterized protein 27.2 56 0.0019 23.8 3.5 19 135-153 9-28 (100)
171 2agh_C Zinc finger protein HRX 24.9 37 0.0013 18.0 1.5 17 413-429 9-25 (31)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=9.6e-22 Score=202.75 Aligned_cols=335 Identities=14% Similarity=0.149 Sum_probs=179.9
Q ss_pred CccCCCCChHHHHHHHcCCC-ccchhhhcccchhhHHhhcc-cceeeecCCCCCCcchHHHHHHHHHhccCCCCeeEEEE
Q 012521 13 GDITSRLPDHLLCRILSCLP-TEDAVRTCILSSRWRDLWTS-IHGLYFDGGNEKPRSWFLNFVERVLGLCQLKDIHNFHL 90 (461)
Q Consensus 13 ~D~~s~LPd~vl~~Ils~Lp-~~~~~~~s~vsrrWr~lw~~-~~~l~~~~~~~~~~~~~~~~v~~~l~~~~~~~i~~l~l 90 (461)
.|+++.|||||+.+||+||| .+|+++++.|||||+++... ...+.+....... ...++.+. +.++++.+
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~--~~L~~L~L 73 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS-------PATVIRRF--PKVRSVEL 73 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC-------HHHHHHHC--TTCCEEEE
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC-------HHHHHhhC--CCceEEec
Confidence 58999999999999999999 99999999999999987211 1224443221111 01222222 35777777
Q ss_pred EEccc-------CcCCcccHHHHHHHHHh--cCccEEEEEEeecccc-------cc------------cceecccCCccc
Q 012521 91 RSSTL-------REKDFSRVSEWICFAIQ--RNVRHLFLDVYSTSNF-------TR------------HKRILELPQSIL 142 (461)
Q Consensus 91 ~~~~~-------~~~~~~~~~~wl~~~~~--~~l~~L~l~~~~~~~~-------~~------------~~~~~~lp~~l~ 142 (461)
..... ...+.+.+..|+..... .++++|++........ .+ ......++....
T Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 153 (594)
T 2p1m_B 74 KGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153 (594)
T ss_dssp ECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH
T ss_pred cCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH
Confidence 75431 01223456677776654 3677776654321000 00 001111333333
Q ss_pred CCCCccEEEeceeeecc-----CCCCccccCCccEEEeee-e-cCChhHHHHHHhcCCccCeEEEeeeecC---------
Q 012521 143 TCETLVELKLCSDIVID-----IPGSGICFPSLKILHFGF-C-HPDRGLMQKFFSSCPTLEELTIEGILHP--------- 206 (461)
Q Consensus 143 ~~~~L~~L~L~~~~l~~-----~~~~~~~~~~L~~L~L~~-~-~~~~~~l~~l~~~cp~Le~L~L~~~~c~--------- 206 (461)
.|++|++|+|.+|.+.+ ++.+...+++|++|+|.+ . ..++..+..++.+||+|+.|++.+ |.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~--~~~~~~l~~~~ 231 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR--AVPLEKLATLL 231 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT--TSCHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC--CCcHHHHHHHH
Confidence 57888888888877543 112213577899999887 3 345678888888899999999987 51
Q ss_pred --CCCeeEEEE--------------------------------------------EcCCcceEEEEEEeecCcccceeEE
Q 012521 207 --RDNVQTINI--------------------------------------------IVQTLKRLSISVFVMQGYVSKRIFE 240 (461)
Q Consensus 207 --~~~~~~~~i--------------------------------------------~~~sL~~L~l~~~~~~~~~~~~~~~ 240 (461)
+..+..+.+ .+++|++|.+.+|. ........+.
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~ 310 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLL 310 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHH
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHH
Confidence 122222220 23678888877765 2111111112
Q ss_pred EecCCccEEEEeecccCc---eEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhh
Q 012521 241 IRTPNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLS 317 (461)
Q Consensus 241 ~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~ 317 (461)
..+|+|++|.+.++.... .....+++|+.+.+..+...+...........+..+..++++|+.|.+.. +.+....
T Consensus 311 ~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~--~~l~~~~ 388 (594)
T 2p1m_B 311 CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC--RQMTNAA 388 (594)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE--SCCCHHH
T ss_pred hcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc--CCcCHHH
Confidence 256889999888762211 11234788888777432100000000111144555666677788777665 3332110
Q ss_pred hhccCCCCCCCccceEEEEe-----ccCCC----hhhHHHHHhcCCCCeeEEEee
Q 012521 318 FVLNNNLPTFSNLISLELHI-----DSCFG----WKLLTPFLKRSPSLKVLNLDF 363 (461)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~-----~~~~~----~~~l~~ll~~~p~L~~L~l~~ 363 (461)
. ......+++|++|++.. +.... ..++..++++||+|+.|++.+
T Consensus 389 ~--~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 389 L--ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp H--HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred H--HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 0 00011345677777772 22222 345666667777777777754
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.9e-21 Score=200.46 Aligned_cols=387 Identities=11% Similarity=0.069 Sum_probs=190.2
Q ss_pred CccCC----CCChHHHHHHHcCC-CccchhhhcccchhhHHhhcccc-eeeecCCCCCCcchHHHHHHHHHhccCCCCee
Q 012521 13 GDITS----RLPDHLLCRILSCL-PTEDAVRTCILSSRWRDLWTSIH-GLYFDGGNEKPRSWFLNFVERVLGLCQLKDIH 86 (461)
Q Consensus 13 ~D~~s----~LPd~vl~~Ils~L-p~~~~~~~s~vsrrWr~lw~~~~-~l~~~~~~~~~~~~~~~~v~~~l~~~~~~~i~ 86 (461)
.||++ +||||++.+||+|| +.+|+++++.|||||++++...+ .+.+.. . +..+...++.+.+ .++
T Consensus 6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~------~~~~~~~~~~~~~--~L~ 76 (592)
T 3ogk_B 6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-C------YTATPDRLSRRFP--NLR 76 (592)
T ss_dssp ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-G------GGSCHHHHHHHCT--TCS
T ss_pred hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-c------cccChHHHHHhCC--CCe
Confidence 45555 89999999999999 89999999999999999854332 122211 1 1111233333333 477
Q ss_pred EEEEEEccc-------CcCCcccHHHHHHHHHh--cCccEEEEEEeecccc-------cc-------------cceeccc
Q 012521 87 NFHLRSSTL-------REKDFSRVSEWICFAIQ--RNVRHLFLDVYSTSNF-------TR-------------HKRILEL 137 (461)
Q Consensus 87 ~l~l~~~~~-------~~~~~~~~~~wl~~~~~--~~l~~L~l~~~~~~~~-------~~-------------~~~~~~l 137 (461)
++.++.... .....+....|+..... +++++|++........ .+ +.....+
T Consensus 77 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l 156 (592)
T 3ogk_B 77 SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156 (592)
T ss_dssp EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH
T ss_pred EEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHH
Confidence 777765321 01223444556665543 3666665543320000 00 0011112
Q ss_pred CCcccCCCCccEEEeceeeeccCC-----CCccccCCccEEEeee-ecC--ChhHHHHHHhcCCccCeEEEeeeecCCCC
Q 012521 138 PQSILTCETLVELKLCSDIVIDIP-----GSGICFPSLKILHFGF-CHP--DRGLMQKFFSSCPTLEELTIEGILHPRDN 209 (461)
Q Consensus 138 p~~l~~~~~L~~L~L~~~~l~~~~-----~~~~~~~~L~~L~L~~-~~~--~~~~l~~l~~~cp~Le~L~L~~~~c~~~~ 209 (461)
+.....|++|++|+|.+|.+.+.. .+...+++|++|+|.+ .+. +...+..++.+||+|++|++.+ |...+
T Consensus 157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~--~~~~~ 234 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD--FEILE 234 (592)
T ss_dssp HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS--CBGGG
T ss_pred HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC--ccHHH
Confidence 222224677777777776654311 0113567777777766 332 3566777777777777777777 53322
Q ss_pred eeEEEEEcCCcceEEEEEEeecC------------------------cccceeEEEecCCccEEEEeecccCc----eEe
Q 012521 210 VQTINIIVQTLKRLSISVFVMQG------------------------YVSKRIFEIRTPNLEYLSIIANSLAY----FVL 261 (461)
Q Consensus 210 ~~~~~i~~~sL~~L~l~~~~~~~------------------------~~~~~~~~~~~p~L~~L~~~~~~~~~----~~~ 261 (461)
+...-...++|+.|.+..+.... ......+...+++|++|+++++.... ..+
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 22111122455555554211100 00001111234566666665543211 113
Q ss_pred ecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEec----------CCChHHHhhhhccCCCCCCCccc
Q 012521 262 DEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILS----------LPDSMTVLSFVLNNNLPTFSNLI 331 (461)
Q Consensus 262 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~----------~~~~~~~l~~~~~~~~~~~~~L~ 331 (461)
..+++|+.+.+. .... ...+..++..+++|++|+++. + ..+... ........+++|+
T Consensus 315 ~~~~~L~~L~L~--~~~~--------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~-~~~~~~--~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 315 QKCPNLEVLETR--NVIG--------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEE-GLVSQR--GLIALAQGCQELE 381 (592)
T ss_dssp TTCTTCCEEEEE--GGGH--------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT-CCCCHH--HHHHHHHHCTTCS
T ss_pred HhCcCCCEEecc--CccC--------HHHHHHHHHhCCCCCEEEeecCcccccccccc-CccCHH--HHHHHHhhCccCe
Confidence 456666666555 1111 144555556666777777761 1 111100 0000012355677
Q ss_pred eEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccc-cccCCCCCCcccccccccccCCccccccccceEEEEEEeeccch
Q 012521 332 SLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKA-HKLTPNTLQDIVFEDLVCVEPECAPNCLSSCVEVIEITNLKRED 410 (461)
Q Consensus 332 ~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~ 410 (461)
+|++..+ ......+..+.++||+|+.|.+..+.. ...+....+.. +.. .. ....+|+.+.+..+.|..
T Consensus 382 ~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~-------~~~--~~-~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 382 YMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG-------VRS--LL-IGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp EEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH-------HHH--HH-HHCTTCCEEEEECCGGGC
T ss_pred EEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH-------HHH--HH-HhCCCCCEEEEecCCCCc
Confidence 7766333 335555555656677777777765420 00000000000 000 00 123578888887655422
Q ss_pred hHHHHHHHHHhcCcccceEEEEecC
Q 012521 411 YELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 411 ~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
. -..+..+.+.++.|+.+.+..+.
T Consensus 451 ~-~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 451 T-DLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp C-HHHHHHHHHSCTTCCEEEECSCC
T ss_pred c-HHHHHHHHHhCccceEeeccCCC
Confidence 2 24455667778999999998664
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=4e-20 Score=176.74 Aligned_cols=38 Identities=34% Similarity=0.531 Sum_probs=35.0
Q ss_pred CccCCCCChHHHHHHHcCCCccchhhhcccchhhHHhh
Q 012521 13 GDITSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDLW 50 (461)
Q Consensus 13 ~D~~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~lw 50 (461)
...+++||||++.+||++|+.+|+++++.|||+|+++.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999974
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.16 E-value=1.1e-11 Score=117.50 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=63.3
Q ss_pred HHHhcCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHH
Q 012521 109 FAIQRNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQK 187 (461)
Q Consensus 109 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~ 187 (461)
.....++++|++.... ...+|..++.+++|++|+|+++.+..+|..-..+++|++|+|.+ .+. .+..
T Consensus 77 ~~~~~~l~~L~L~~n~---------l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~ 144 (328)
T 4fcg_A 77 DATQPGRVALELRSVP---------LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR---ALPA 144 (328)
T ss_dssp HHTSTTCCEEEEESSC---------CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---CCCG
T ss_pred cccccceeEEEccCCC---------chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---cCcH
Confidence 3334578888555433 34788888889999999999998877664327899999999998 443 2333
Q ss_pred HHhcCCccCeEEEeeeecC
Q 012521 188 FFSSCPTLEELTIEGILHP 206 (461)
Q Consensus 188 l~~~cp~Le~L~L~~~~c~ 206 (461)
-+..++.|+.|++.+ |.
T Consensus 145 ~l~~l~~L~~L~L~~--n~ 161 (328)
T 4fcg_A 145 SIASLNRLRELSIRA--CP 161 (328)
T ss_dssp GGGGCTTCCEEEEEE--ET
T ss_pred HHhcCcCCCEEECCC--CC
Confidence 478899999999999 63
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.12 E-value=1.6e-11 Score=117.31 Aligned_cols=190 Identities=18% Similarity=0.164 Sum_probs=96.5
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCC-CCeeEEEEEcC
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPR-DNVQTINIIVQ 218 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~-~~~~~~~i~~~ 218 (461)
+..+++|++|+|++|.+..++.+ ..+++|++|+|.+ .+.+... +..++.|+.|++.+ |.. ..+.. -...+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~-~~l~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~--n~~~~~~~~-~~~l~ 155 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISAL-QNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGA--NHNLSDLSP-LSNMT 155 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGG-TTCTTCSEEECTTSCCCCCGG----GTTCTTCCEEECTT--CTTCCCCGG-GTTCT
T ss_pred hhcCCcCCEEEccCCcccCchHH-cCCCcCCEEECcCCcccCchh----hccCCceeEEECCC--CCCcccccc-hhhCC
Confidence 44466667777766666555544 5666677776666 3332221 55666666666666 411 11111 01225
Q ss_pred CcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce-EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhc
Q 012521 219 TLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF-VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALEL 297 (461)
Q Consensus 219 sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (461)
+|+.|.+.+|...... . ....++|++|+++++..... .+..+++|+.+.+..+.... +.. +..
T Consensus 156 ~L~~L~l~~~~~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~-~~~ 219 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVT---P-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD-----------ITP-VAN 219 (347)
T ss_dssp TCCEEECCSSCCCCCG---G-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-----------CGG-GGG
T ss_pred CCcEEEecCCCcCCch---h-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC-----------Cch-hhc
Confidence 6666666655433210 0 12346666666665533321 14455666655544432211 000 456
Q ss_pred CCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 298 VKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 298 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+++++.|++++ +.+..+. .+..+++|++|++..+..... ..+..+|+|+.|.++++.
T Consensus 220 ~~~L~~L~l~~--n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 220 MTRLNSLKIGN--NKITDLS-----PLANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp CTTCCEEECCS--SCCCCCG-----GGTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSC
T ss_pred CCcCCEEEccC--CccCCCc-----chhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCCc
Confidence 66777777766 4333221 134556666666666533221 234566777777776654
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.11 E-value=1.3e-11 Score=118.04 Aligned_cols=209 Identities=13% Similarity=0.102 Sum_probs=143.6
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
.++++|++... ....+|. +..+++|++|+|++|.+..++.+ ..+++|++|+|.+ .+.+-. .+..
T Consensus 44 ~~L~~L~l~~~---------~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~-~~l~~L~~L~L~~n~i~~~~----~~~~ 108 (347)
T 4fmz_A 44 ESITKLVVAGE---------KVASIQG-IEYLTNLEYLNLNGNQITDISPL-SNLVKLTNLYIGTNKITDIS----ALQN 108 (347)
T ss_dssp TTCSEEECCSS---------CCCCCTT-GGGCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCCCCCG----GGTT
T ss_pred ccccEEEEeCC---------ccccchh-hhhcCCccEEEccCCccccchhh-hcCCcCCEEEccCCcccCch----HHcC
Confidence 57888844332 2334443 55689999999999988776666 7899999999998 554322 3788
Q ss_pred CCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce-EeecCCCeeEE
Q 012521 192 CPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF-VLDEIPFLKKA 270 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~ 270 (461)
++.|++|++.+ |...++.. ....++|+.|.+.+|..... .......++|++|.++++..... .+..+++|+.+
T Consensus 109 l~~L~~L~l~~--n~i~~~~~-~~~l~~L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 182 (347)
T 4fmz_A 109 LTNLRELYLNE--DNISDISP-LANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL 182 (347)
T ss_dssp CTTCSEEECTT--SCCCCCGG-GTTCTTCCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred CCcCCEEECcC--CcccCchh-hccCCceeEEECCCCCCccc---ccchhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence 99999999998 75444433 11348899999988753321 11123568899999988654432 26678889888
Q ss_pred EEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHH
Q 012521 271 FVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFL 350 (461)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll 350 (461)
.+..+.... +.. +..+++++.|.++. +.+.... .+..+++|++|++..+....... +
T Consensus 183 ~l~~n~l~~-----------~~~-~~~l~~L~~L~l~~--n~l~~~~-----~~~~~~~L~~L~l~~n~l~~~~~----~ 239 (347)
T 4fmz_A 183 SLNYNQIED-----------ISP-LASLTSLHYFTAYV--NQITDIT-----PVANMTRLNSLKIGNNKITDLSP----L 239 (347)
T ss_dssp ECTTSCCCC-----------CGG-GGGCTTCCEEECCS--SCCCCCG-----GGGGCTTCCEEECCSSCCCCCGG----G
T ss_pred EccCCcccc-----------ccc-ccCCCccceeeccc--CCCCCCc-----hhhcCCcCCEEEccCCccCCCcc----h
Confidence 776543221 111 67888999999988 5443221 14567889999998875433222 7
Q ss_pred hcCCCCeeEEEeecc
Q 012521 351 KRSPSLKVLNLDFSK 365 (461)
Q Consensus 351 ~~~p~L~~L~l~~~~ 365 (461)
..+|+|+.|+++.+.
T Consensus 240 ~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQ 254 (347)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCCCCCEEECCCCc
Confidence 889999999999876
No 7
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.10 E-value=2.7e-10 Score=109.16 Aligned_cols=263 Identities=15% Similarity=0.164 Sum_probs=162.5
Q ss_pred cCccEEEEEEeecccccccceecccCC-cccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQ-SILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKF 188 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l 188 (461)
.++++|++... ....+|. .+..+++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+.+ .....
T Consensus 52 ~~L~~L~l~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~--~~~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNN---------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSYNYLSN--LSSSW 119 (353)
T ss_dssp TTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSS--CCHHH
T ss_pred ccCcEEECCCC---------cCcccCHHHhccCCCCCEEECCCCccCccCHhhc-CCCCCCCEEECCCCcCCc--CCHhH
Confidence 47888844332 2334555 4556999999999998876543 35 6789999999998 4432 22244
Q ss_pred HhcCCccCeEEEeeeecCCCCeeE-EEE-EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce---Eeec
Q 012521 189 FSSCPTLEELTIEGILHPRDNVQT-INI-IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF---VLDE 263 (461)
Q Consensus 189 ~~~cp~Le~L~L~~~~c~~~~~~~-~~i-~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~---~~~~ 263 (461)
+.+++.|++|++.+ +....+.. -.+ ..++|+.|.+.++...... ........++|++|+++++..... .+..
T Consensus 120 ~~~l~~L~~L~L~~--n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 120 FKPLSSLTFLNLLG--NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HTTCTTCSEEECTT--CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hCCCccCCEEECCC--CCCcccCchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 78899999999998 64443332 111 3489999999987422100 000112357899999988754433 3456
Q ss_pred CCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCC--
Q 012521 264 IPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCF-- 341 (461)
Q Consensus 264 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-- 341 (461)
+++|+.+.+..+... .....++..+++++.|+++. +.+................++.+++......
T Consensus 197 l~~L~~L~l~~n~l~----------~~~~~~~~~~~~L~~L~L~~--n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 197 IQNVSHLILHMKQHI----------LLLEIFVDVTSSVECLELRD--TDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CSEEEEEEEECSCST----------THHHHHHHHTTTEEEEEEES--CBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cccCCeecCCCCccc----------cchhhhhhhcccccEEECCC--CccccccccccccccccchhhccccccccccCc
Confidence 788888877664321 22334566789999999998 6554331111122234566777888776431
Q ss_pred ChhhHHHHHhcCCCCeeEEEeeccccccCCCCCCcccccccccccCCccccc---cccceEEEEEE--eeccchhHHHHH
Q 012521 342 GWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTLQDIVFEDLVCVEPECAPNC---LSSCVEVIEIT--NLKREDYELEMV 416 (461)
Q Consensus 342 ~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~~v~i~--~~~g~~~~~~l~ 416 (461)
....+...+..+|+|+.|+++.+.- .. .|.. ...+|+++.+. .+.+....+..+
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l-------------------~~--i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l 323 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQL-------------------KS--VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 323 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCC-------------------CC--CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCC-------------------Cc--cCHHHHhcCCCCCEEEeeCCCccCcCCCcHHH
Confidence 2234556688999999999998862 11 2211 23578888887 345555455555
Q ss_pred HHHHhcC
Q 012521 417 RYLLENS 423 (461)
Q Consensus 417 ~~ll~~a 423 (461)
...+.+.
T Consensus 324 ~~~~~~~ 330 (353)
T 2z80_A 324 SRWLNKN 330 (353)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 5444443
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.05 E-value=7e-10 Score=113.88 Aligned_cols=71 Identities=15% Similarity=0.041 Sum_probs=38.6
Q ss_pred hHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 290 DARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 290 ~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.+..+...+++|+.|.++. +.+... .....+..+++|++|+|..|. ....++..+...+|+|+.|.|+++.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~--n~l~~~--~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGY--VGESDE--GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHSCTTCCEEEECS--CCSSHH--HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhCccceEeeccC--CCCCHH--HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 3444444556666666665 322110 000112244567777777765 3555566666677777777777765
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.04 E-value=1.2e-10 Score=116.13 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=53.0
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCCC
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTL 374 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~ 374 (461)
+..+++|+.|++++ +.+..+ ..+..+++|++|++..+....... +..+++|+.|.++.+..
T Consensus 217 ~~~l~~L~~L~l~~--n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l-------- 277 (466)
T 1o6v_A 217 LGILTNLDELSLNG--NQLKDI-----GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQI-------- 277 (466)
T ss_dssp GGGCTTCCEEECCS--SCCCCC-----GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC--------
T ss_pred ccccCCCCEEECCC--CCcccc-----hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCcc--------
Confidence 34455566666655 332211 122344556666665553222111 45566666666665541
Q ss_pred CcccccccccccCCccccccccceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 375 QDIVFEDLVCVEPECAPNCLSSCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
... .+-....+|+.+.+.+..-.. +. . +.+.+.|+.+.+..+.
T Consensus 278 -----------~~~-~~~~~l~~L~~L~L~~n~l~~--~~---~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 278 -----------SNI-SPLAGLTALTNLELNENQLED--IS---P-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp -----------CCC-GGGTTCTTCSEEECCSSCCSC--CG---G-GGGCTTCSEEECCSSC
T ss_pred -----------Ccc-ccccCCCccCeEEcCCCcccC--ch---h-hcCCCCCCEEECcCCc
Confidence 110 111124568888776433211 00 1 6788999999998776
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.99 E-value=1.3e-10 Score=115.73 Aligned_cols=233 Identities=17% Similarity=0.164 Sum_probs=147.5
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCC
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQT 219 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~s 219 (461)
+..+++|++|+|++|.+...+.+ ..+++|++|+|.+ .+.+.. -+..++.|+.|.+.+ + ..+... -...++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~--~-~~~~~~-~~~l~~ 178 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDPL-KNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFGN--Q-VTDLKP-LANLTT 178 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEEE--S-CCCCGG-GTTCTT
T ss_pred hcCCCCCCEEECCCCCCCCChHH-cCCCCCCEEECCCCccCCCh----hhccCCcccEeecCC--c-ccCchh-hccCCC
Confidence 55578888888888777665555 6778888888887 544322 266788888888865 3 112211 112377
Q ss_pred cceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce-EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcC
Q 012521 220 LKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF-VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELV 298 (461)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (461)
|+.|.+.++..... ......++|++|+++++..... .++.+++|+.+.+..+.... + ..+..+
T Consensus 179 L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-----------~-~~l~~l 242 (466)
T 1o6v_A 179 LERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----------I-GTLASL 242 (466)
T ss_dssp CCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-----------C-GGGGGC
T ss_pred CCEEECcCCcCCCC----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc-----------c-hhhhcC
Confidence 88888877654321 1122458899999887654322 35668888888776543211 1 136788
Q ss_pred CCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCCCCccc
Q 012521 299 KRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTLQDIV 378 (461)
Q Consensus 299 ~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~ 378 (461)
++++.|+++. +.+.... .+..+++|++|++..+...... . +..+++|+.|+++.+.-
T Consensus 243 ~~L~~L~l~~--n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l------------ 299 (466)
T 1o6v_A 243 TNLTDLDLAN--NQISNLA-----PLSGLTKLTELKLGANQISNIS---P-LAGLTALTNLELNENQL------------ 299 (466)
T ss_dssp TTCSEEECCS--SCCCCCG-----GGTTCTTCSEEECCSSCCCCCG---G-GTTCTTCSEEECCSSCC------------
T ss_pred CCCCEEECCC--Cccccch-----hhhcCCCCCEEECCCCccCccc---c-ccCCCccCeEEcCCCcc------------
Confidence 9999999998 5543321 1456788999999887543322 2 67899999999998752
Q ss_pred ccccccccCCccccccccceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 379 FEDLVCVEPECAPNCLSSCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
... .+-....+|+.+.+.+..-... .. +.+.+.|+++.+..+.
T Consensus 300 -------~~~-~~~~~l~~L~~L~L~~n~l~~~-~~-----~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 300 -------EDI-SPISNLKNLTYLTLYFNNISDI-SP-----VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp -------SCC-GGGGGCTTCSEEECCSSCCSCC-GG-----GGGCTTCCEEECCSSC
T ss_pred -------cCc-hhhcCCCCCCEEECcCCcCCCc-hh-----hccCccCCEeECCCCc
Confidence 110 1112346788888874332211 01 5788999999998765
No 11
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.99 E-value=5.7e-11 Score=122.07 Aligned_cols=234 Identities=10% Similarity=0.071 Sum_probs=144.9
Q ss_pred ccCCccEEEeeeecCChhHHHHHHhcCCccCeEEEeeeecCC-CCeeEEEEEcCCcceEEEEEE--------eecCcccc
Q 012521 166 CFPSLKILHFGFCHPDRGLMQKFFSSCPTLEELTIEGILHPR-DNVQTINIIVQTLKRLSISVF--------VMQGYVSK 236 (461)
Q Consensus 166 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~-~~~~~~~i~~~sL~~L~l~~~--------~~~~~~~~ 236 (461)
.+++|++|+|.+...++..+..++..||+|++|.+.+ |.. .++..+.-.+++|++|.+.+| ........
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~--~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD--YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC--ccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 5789999999983366778888899999999999998 510 111222223588999999553 22211111
Q ss_pred eeEEEecCCccEEEEeecccCce----EeecCCCeeEEEEEEEE-----ceeecCCCCcchhhHHHHhhcCCCceEEEEe
Q 012521 237 RIFEIRTPNLEYLSIIANSLAYF----VLDEIPFLKKAFVLVEF-----NVLRRNSSGIFENDARSALELVKRIKSMKIL 307 (461)
Q Consensus 237 ~~~~~~~p~L~~L~~~~~~~~~~----~~~~~~~L~~~~l~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~ 307 (461)
..+...+|+|++|.+........ ....+++|+.+.+.... ..... .....+..++..+++|+.|+++
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE----PLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC----CTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC----chhhHHHHHHhhCCCccEEeec
Confidence 12223478999997765433221 12357899988887421 11100 0014567778899999999997
Q ss_pred cCCChHHHhhhhccCCCC-CCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCCCCccccccccccc
Q 012521 308 SLPDSMTVLSFVLNNNLP-TFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTLQDIVFEDLVCVE 386 (461)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (461)
+ ..... ....+. .+++|+.|++..+.. ...++..+..+||+|++|+|+++.. +... ..
T Consensus 441 ~--~l~~~----~~~~l~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~L~~L~L~~n~~---~~~~-----------~~ 499 (594)
T 2p1m_B 441 G--LLTDK----VFEYIGTYAKKMEMLSVAFAGD-SDLGMHHVLSGCDSLRKLEIRDCPF---GDKA-----------LL 499 (594)
T ss_dssp S--SCCHH----HHHHHHHHCTTCCEEEEESCCS-SHHHHHHHHHHCTTCCEEEEESCSC---CHHH-----------HH
T ss_pred C--cccHH----HHHHHHHhchhccEeeccCCCC-cHHHHHHHHhcCCCcCEEECcCCCC---cHHH-----------HH
Confidence 5 21111 111111 367899999988764 6667777888999999999999862 1100 00
Q ss_pred CCccccccccceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEE
Q 012521 387 PECAPNCLSSCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVG 432 (461)
Q Consensus 387 ~~~~~~~~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~ 432 (461)
. .. ....+|+++.+.++.... +-++.+.+..|.|+...+.
T Consensus 500 ~--~~-~~l~~L~~L~l~~~~~~~---~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 500 A--NA-SKLETMRSLWMSSCSVSF---GACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp H--TG-GGGGGSSEEEEESSCCBH---HHHHHHHHHCTTEEEEEEC
T ss_pred H--HH-HhCCCCCEEeeeCCCCCH---HHHHHHHHhCCCCEEEEec
Confidence 0 00 123689999999887653 3445566677777654443
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.95 E-value=8.8e-11 Score=110.12 Aligned_cols=211 Identities=15% Similarity=0.104 Sum_probs=132.1
Q ss_pred eecccCCcccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCC
Q 012521 133 RILELPQSILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDN 209 (461)
Q Consensus 133 ~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~ 209 (461)
....+|..+. ++|++|+|.++.+..++. + ..+++|++|+|.+ .+.........+.+++.|+.|++.+ |....
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~--n~i~~ 92 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF--NGVIT 92 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS--CSEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCccCccCHhHh-hccccCCEEECCCCccCcccCcccccccccccCEEECCC--Ccccc
Confidence 3445565443 689999999998877664 4 6899999999998 4432221123355799999999999 54222
Q ss_pred eeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc---eEeecCCCeeEEEEEEEEceeecCCCCc
Q 012521 210 VQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEFNVLRRNSSGI 286 (461)
Q Consensus 210 ~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~ 286 (461)
+.......++|+.|.+.++....... .......++|++|+++++.... ..+..+++|+.+.+..+....
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------- 164 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE------- 164 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-------
T ss_pred ChhhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-------
Confidence 22222235889999998765432100 0112345789999998764332 124567888888776543321
Q ss_pred chhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 287 FENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 287 ~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
......+..+++|+.|+++. +.+..+ ....+..+++|++|++..+...... ...+..+|+|+.|+++.+.
T Consensus 165 --~~~~~~~~~l~~L~~L~Ls~--n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 165 --NFLPDIFTELRNLTFLDLSQ--CQLEQL---SPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp --GEECSCCTTCTTCCEEECTT--SCCCEE---CTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSC
T ss_pred --ccchhHHhhCcCCCEEECCC--CCcCCc---CHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCC
Confidence 01122356778899999987 554322 2334556778888888776432211 1135778999999998875
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.94 E-value=3.9e-10 Score=106.78 Aligned_cols=199 Identities=15% Similarity=0.072 Sum_probs=134.5
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcce
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLKR 222 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~ 222 (461)
.+++++|+|.++.+..+|.....+++|++|+|.+ .+. .+...+..++.|+.|+|.+ |....+...--..++|+.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~--n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLAR--NPLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEES--CCCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCC--CccccCcHHHhcCcCCCE
Confidence 3689999999999877665326799999999998 443 2333467899999999999 643322111112378999
Q ss_pred EEEEEEeecCcccceeE-------EEecCCccEEEEeecccCce--EeecCCCeeEEEEEEEEceeecCCCCcchhhHHH
Q 012521 223 LSISVFVMQGYVSKRIF-------EIRTPNLEYLSIIANSLAYF--VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARS 293 (461)
Q Consensus 223 L~l~~~~~~~~~~~~~~-------~~~~p~L~~L~~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 293 (461)
|.+.+|...+..+.... .-..++|++|+++++....+ .+.++++|+.+.+..+.... +..
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-----------l~~ 223 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-----------LGP 223 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-----------CCG
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-----------Cch
Confidence 99999865432111111 23489999999998754432 35678899998887654321 111
Q ss_pred HhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 294 ALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 294 ~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.+..+++|+.|+++. +.+. ......+..+.+|++|++..+.. ...+..-+..+++|+.|+|+++.
T Consensus 224 ~l~~l~~L~~L~Ls~--n~~~---~~~p~~~~~l~~L~~L~L~~n~~--~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 224 AIHHLPKLEELDLRG--CTAL---RNYPPIFGGRAPLKRLILKDCSN--LLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp GGGGCTTCCEEECTT--CTTC---CBCCCCTTCCCCCCEEECTTCTT--CCBCCTTGGGCTTCCEEECTTCT
T ss_pred hhccCCCCCEEECcC--Ccch---hhhHHHhcCCCCCCEEECCCCCc--hhhcchhhhcCCCCCEEeCCCCC
Confidence 367889999999997 4432 11223345677888888877643 12233446889999999999976
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.93 E-value=1.4e-10 Score=112.60 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=32.8
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+..+++|+.|+++. +.+... ....+..+++|++|++..+.... +......+|+|+.|+++.+.
T Consensus 244 l~~l~~L~~L~Ls~--n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 244 LLNYPGLVEVDLSY--NELEKI---MYHPFVKMQRLERLYISNNRLVA---LNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp GGGCTTCSEEECCS--SCCCEE---ESGGGTTCSSCCEEECCSSCCCE---EECSSSCCTTCCEEECCSSC
T ss_pred HcCCCCccEEECCC--CcCCCc---ChhHccccccCCEEECCCCcCcc---cCcccCCCCCCCEEECCCCc
Confidence 55666777777766 443211 12223345566666666553211 22223456677777776654
No 15
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.93 E-value=2.2e-11 Score=114.93 Aligned_cols=187 Identities=13% Similarity=0.106 Sum_probs=110.2
Q ss_pred CCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCc
Q 012521 144 CETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTL 220 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL 220 (461)
+++|++|+|+++.+...+ .+ ..+++|++|+|.+ .+.+... +..++.|+.|++.+ |. +..+. ..++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~--n~---l~~l~-~~~~L 101 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNN--NY---VQELL-VGPSI 101 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCS--SE---EEEEE-ECTTC
T ss_pred CCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcC--Cc---ccccc-CCCCc
Confidence 556777777766665433 22 4566777777766 3321111 55667777777766 42 22222 23677
Q ss_pred ceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc---eEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhc
Q 012521 221 KRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALEL 297 (461)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (461)
+.|.+.++... .......++|++|.++++.... ..+..+++|+.+.++.+.... .....+...
T Consensus 102 ~~L~l~~n~l~-----~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~~ 167 (317)
T 3o53_A 102 ETLHAANNNIS-----RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT---------VNFAELAAS 167 (317)
T ss_dssp CEEECCSSCCS-----EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE---------EEGGGGGGG
T ss_pred CEEECCCCccC-----CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc---------ccHHHHhhc
Confidence 77777665433 2223345777777777654432 234556777777665443221 112223456
Q ss_pred CCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 298 VKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 298 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+++++.|+++. +.+..+ .....+.+|++|+++.+.... +..-+..+++|+.|+++.+.
T Consensus 168 l~~L~~L~L~~--N~l~~~-----~~~~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 168 SDTLEHLNLQY--NFIYDV-----KGQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp TTTCCEEECTT--SCCCEE-----ECCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC
T ss_pred cCcCCEEECCC--CcCccc-----ccccccccCCEEECCCCcCCc---chhhhcccCcccEEECcCCc
Confidence 78999999998 655433 112247789999988875422 22236788999999999876
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.92 E-value=3.7e-11 Score=120.17 Aligned_cols=187 Identities=13% Similarity=0.106 Sum_probs=122.4
Q ss_pred CCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCc
Q 012521 144 CETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTL 220 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL 220 (461)
+++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+.+... +..+|.|+.|+|.+ |. +..+. ..++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~--N~---l~~l~-~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNN--NY---VQELL-VGPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCS--SE---EEEEE-ECTTC
T ss_pred CCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecC--Cc---CCCCC-CCCCc
Confidence 457888888888776544 33 6788888888887 4332111 67788888888888 53 33332 33788
Q ss_pred ceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc---eEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhc
Q 012521 221 KRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALEL 297 (461)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (461)
+.|.+.+|... .......|+|++|.++++.... ..++.+++|+.++++.+.... .....+...
T Consensus 102 ~~L~L~~N~l~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~l~~~ 167 (487)
T 3oja_A 102 ETLHAANNNIS-----RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT---------VNFAELAAS 167 (487)
T ss_dssp CEEECCSSCCC-----CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE---------EEGGGGGGG
T ss_pred CEEECcCCcCC-----CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC---------cChHHHhhh
Confidence 88888877654 2233345888999888765442 245667888887765543322 112233457
Q ss_pred CCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 298 VKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 298 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+++|+.|+|+. +.+..+ .....+++|+.|+|+.+.... +..-+..+|+|+.|+++++.
T Consensus 168 l~~L~~L~Ls~--N~l~~~-----~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 168 SDTLEHLNLQY--NFIYDV-----KGQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp TTTCCEEECTT--SCCCEE-----ECCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC
T ss_pred CCcccEEecCC--Cccccc-----cccccCCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCc
Confidence 88999999998 655432 112247789999998875422 22236788999999999976
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.90 E-value=1.6e-11 Score=126.48 Aligned_cols=57 Identities=28% Similarity=0.361 Sum_probs=26.4
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
+++|++|+|+++.+..+|..-..+++|++|+|.+ .+. +.....+..+|.|+.|++.+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE--NLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCS--BGGGGCGGGCTTCSEEECCS
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcC--cCchhhhhccCcCCEEECCC
Confidence 5555555555555544332214455555555555 222 11112244455555555554
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.89 E-value=7.9e-10 Score=107.38 Aligned_cols=124 Identities=16% Similarity=0.076 Sum_probs=78.8
Q ss_pred CCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc-eEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhh
Q 012521 218 QTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY-FVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALE 296 (461)
Q Consensus 218 ~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
++|+.|.+.++... ..-....++|++|+++++.... ..+..+++|+.+.++.+.... .....+.
T Consensus 205 ~~L~~L~l~~n~l~-----~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----------~~~~~~~ 269 (390)
T 3o6n_A 205 IAVEELDASHNSIN-----VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----------IMYHPFV 269 (390)
T ss_dssp SSCSEEECCSSCCC-----EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----------EESGGGT
T ss_pred CcceEEECCCCeee-----eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC----------cChhHcc
Confidence 46677776655432 1111224678888887764432 235667888888776653321 1122356
Q ss_pred cCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 297 LVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 297 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.+++|+.|+++. +.+..+ ......+++|+.|++..+... .+..-+..+|+|+.|+++++.
T Consensus 270 ~l~~L~~L~L~~--n~l~~~----~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 270 KMQRLERLYISN--NRLVAL----NLYGQPIPTLKVLDLSHNHLL---HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp TCSSCCEEECCS--SCCCEE----ECSSSCCTTCCEEECCSSCCC---CCGGGHHHHTTCSEEECCSSC
T ss_pred ccccCCEEECCC--CcCccc----CcccCCCCCCCEEECCCCcce---ecCccccccCcCCEEECCCCc
Confidence 789999999998 655432 222346779999999888542 233335678999999999976
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.88 E-value=1.5e-10 Score=108.56 Aligned_cols=169 Identities=16% Similarity=0.228 Sum_probs=91.0
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCC
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQT 219 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~s 219 (461)
+..+++|++|+|++|.+..++.+ ..+++|++|+|.+ .+.+.. -+..++.|+.|++.+ |...++..+ ...++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~~-~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~--n~l~~~~~l-~~l~~ 130 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAPL-KNLTKITELELSGNPLKNVS----AIAGLQSIKTLDLTS--TQITDVTPL-AGLSN 130 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGG-TTCCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTT--SCCCCCGGG-TTCTT
T ss_pred hhccCCCCEEEccCCcCCCChhH-ccCCCCCEEEccCCcCCCch----hhcCCCCCCEEECCC--CCCCCchhh-cCCCC
Confidence 44577777777777776655545 6677777777777 443222 256677777777777 543333210 01255
Q ss_pred cceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCC
Q 012521 220 LKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVK 299 (461)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (461)
|+.|.+.++..... .. ....++|++|+++++..... . . +..++
T Consensus 131 L~~L~l~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~-----------------------------~---~-l~~l~ 173 (308)
T 1h6u_A 131 LQVLYLDLNQITNI---SP-LAGLTNLQYLSIGNAQVSDL-----------------------------T---P-LANLS 173 (308)
T ss_dssp CCEEECCSSCCCCC---GG-GGGCTTCCEEECCSSCCCCC-----------------------------G---G-GTTCT
T ss_pred CCEEECCCCccCcC---cc-ccCCCCccEEEccCCcCCCC-----------------------------h---h-hcCCC
Confidence 66666555433211 00 11234445544444322110 1 1 45667
Q ss_pred CceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 300 RIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 300 ~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+|+.|+++. +.+..+. .+..+++|++|+++.+...... . +..+|+|+.|.++.+.
T Consensus 174 ~L~~L~l~~--n~l~~~~-----~l~~l~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 174 KLTTLKADD--NKISDIS-----PLASLPNLIEVHLKNNQISDVS---P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCCEEECCS--SCCCCCG-----GGGGCTTCCEEECTTSCCCBCG---G-GTTCTTCCEEEEEEEE
T ss_pred CCCEEECCC--CccCcCh-----hhcCCCCCCEEEccCCccCccc---c-ccCCCCCCEEEccCCe
Confidence 777777776 4443221 1345566777777666432222 1 4677777777777765
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.87 E-value=4.2e-10 Score=112.42 Aligned_cols=212 Identities=12% Similarity=0.033 Sum_probs=95.0
Q ss_pred cccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-
Q 012521 140 SILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI- 215 (461)
Q Consensus 140 ~l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i- 215 (461)
.+..+++|++|+|+++.+..++. + ..+++|++|+|.+ .+. ......+..++.|+.|++.+ +...++..-.+
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~ 149 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISENKIV--ILLDYMFQDLYNLKSLEVGD--NDLVYISHRAFS 149 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSS-TTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEEECC--TTCCEECTTSST
T ss_pred hhhCCccCCEEECCCCcCCccCcccc-cCCCCCCEEECCCCccc--cCChhHccccccCCEEECCC--CccceeChhhcc
Confidence 33446666666666666554442 2 4566666666665 322 11112245566666666666 42211110001
Q ss_pred EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc---eEeecCCCeeEEEEEEEEceeecCCCC-------
Q 012521 216 IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEFNVLRRNSSG------- 285 (461)
Q Consensus 216 ~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~------- 285 (461)
..++|+.|.+.++...... .......++|+.|+++++.... ..+..+++|+.+.+..+.......+..
T Consensus 150 ~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp TCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred CCCCCCEEECCCCcCcccC--hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 1255666666655332100 0011124556666665543222 123445555555554432211100000
Q ss_pred -------cchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCee
Q 012521 286 -------IFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKV 358 (461)
Q Consensus 286 -------~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~ 358 (461)
.........+..+++|+.|+|+. +.+..+ ....+..+.+|+.|++..+.... .....+..+++|+.
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~--n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSY--NPISTI---EGSMLHELLRLQEIQLVGGQLAV--VEPYAFRGLNYLRV 300 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCS--SCCCEE---CTTSCTTCTTCCEEECCSSCCSE--ECTTTBTTCTTCCE
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCC--CcCCcc---ChhhccccccCCEEECCCCccce--ECHHHhcCcccCCE
Confidence 00011112345566666666665 433211 12233445566666665553211 11223456677777
Q ss_pred EEEeecc
Q 012521 359 LNLDFSK 365 (461)
Q Consensus 359 L~l~~~~ 365 (461)
|+|+.+.
T Consensus 301 L~L~~N~ 307 (477)
T 2id5_A 301 LNVSGNQ 307 (477)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 7776654
No 21
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=3.6e-10 Score=109.61 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=37.6
Q ss_pred HHhhcCCCceEEEEecCCChHHHh--hhhccCCCCCCCccceEEEEeccCC--ChhhHHHHHhcCCCCeeEEEeecc
Q 012521 293 SALELVKRIKSMKILSLPDSMTVL--SFVLNNNLPTFSNLISLELHIDSCF--GWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 293 ~~l~~~~~l~~L~l~~~~~~~~~l--~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
..+..+++|+.|.++. +.+... .......+..+++|++|+|..+... ....+...+..+|+|+.|.|+.+.
T Consensus 181 ~~l~~~~~L~~L~L~~--n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQ--NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHCTTCCEEECCS--SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHhCCCcCEEECcC--CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 4455666777777766 433311 0111113445566776666665421 113345556667777777776654
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.85 E-value=4.3e-10 Score=115.57 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=29.6
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+..+++|+.|+|++ +.+..+ ......+++|+.|+|+.+... .++.-+..+|+|+.|+|+++.
T Consensus 274 ~~~l~~L~~L~Ls~--N~l~~l----~~~~~~l~~L~~L~Ls~N~l~---~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 274 FVKMQRLERLYISN--NRLVAL----NLYGQPIPTLKVLDLSHNHLL---HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp GTTCSSCCEEECTT--SCCCEE----ECSSSCCTTCCEEECCSSCCC---CCGGGHHHHTTCSEEECCSSC
T ss_pred hcCccCCCEEECCC--CCCCCC----CcccccCCCCcEEECCCCCCC---ccCcccccCCCCCEEECCCCC
Confidence 34455555555555 333221 111223456666666555331 122233455666666666654
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.83 E-value=8.1e-10 Score=109.50 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=26.0
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
+..+++|++|+|++|.+..++ + ..+++|++|+|.+ .+.+. . +..++.|+.|++.+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~-~~l~~L~~L~Ls~N~l~~~---~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-L-SQNTNLTYLACDSNKLTNL---D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-C-TTCTTCSEEECCSSCCSCC---C--CTTCTTCCEEECCS
T ss_pred hcccCCCCEEEccCCcCCeEc-c-ccCCCCCEEECcCCCCcee---e--cCCCCcCCEEECCC
Confidence 333555555555555554433 3 4455555555555 32211 1 34455555555555
No 24
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.83 E-value=4.6e-11 Score=118.75 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=35.8
Q ss_pred HHHHhhcCCCceEEEEecCCChHHHhhh--hccCCCCCCCccceEEEEeccCCChh---hHHHHHhcCCCCeeEEEeecc
Q 012521 291 ARSALELVKRIKSMKILSLPDSMTVLSF--VLNNNLPTFSNLISLELHIDSCFGWK---LLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 291 ~~~~l~~~~~l~~L~l~~~~~~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~---~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+...+..++++++|+++. +.+..... ........+.+|++|++..+.. ... .+...+..+|+|+.|+++.+.
T Consensus 219 l~~~l~~~~~L~~L~Ls~--n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 219 LCGIVASKASLRELALGS--NKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHCTTCCEEECCS--SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHhCCCccEEeccC--CcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 444555666777777766 43332110 0000111345666666665532 221 244555566667766666654
No 25
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.82 E-value=2.1e-09 Score=71.67 Aligned_cols=39 Identities=33% Similarity=0.510 Sum_probs=33.5
Q ss_pred CCccCCCCChHHHHHHHcCCCccchhhhcccchhhHHhh
Q 012521 12 RGDITSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDLW 50 (461)
Q Consensus 12 ~~D~~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~lw 50 (461)
..+.++.||+|++.+||++||.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999999999999999999999763
No 26
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.82 E-value=3.8e-09 Score=108.16 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=15.2
Q ss_pred CCccEEEeceeeeccCCCCccccCCccEEEeee
Q 012521 145 ETLVELKLCSDIVIDIPGSGICFPSLKILHFGF 177 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~ 177 (461)
++|++|+|++|.+..+|. .+++|++|+|.+
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~ 90 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSG 90 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCC
Confidence 455555555555544333 245555555555
No 27
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.82 E-value=2.9e-10 Score=108.03 Aligned_cols=68 Identities=13% Similarity=-0.006 Sum_probs=31.3
Q ss_pred HHHHhhcCCCceEEEEecCCCh-HHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeec
Q 012521 291 ARSALELVKRIKSMKILSLPDS-MTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 291 ~~~~l~~~~~l~~L~l~~~~~~-~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
+...+..+++|+.|++++ +. +. ......+..+++|++|++..+.......+ ..+.++|+|+.|+|.++
T Consensus 214 l~~~~~~~~~L~~L~l~~--~~~l~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSD--SVMLK---NDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHCTTCSEEECTT--CTTCC---GGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred HHHHHhhCCCCCEEeCCC--CCcCC---HHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 344455566666666665 32 11 11111223445566555555532222222 22345666666666554
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.81 E-value=1.4e-09 Score=111.65 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=35.9
Q ss_pred ccCCcc-cCCCCccEEEeceeeeccCCCCc-cccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 136 ELPQSI-LTCETLVELKLCSDIVIDIPGSG-ICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 136 ~lp~~l-~~~~~L~~L~L~~~~l~~~~~~~-~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
.+|+.. ..+++|++|+|++|.+..++... ..+++|++|+|.+ .+.+ .....+..++.|+.|++.+
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTT
T ss_pred CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcC
Confidence 344433 34677777777776665544321 4567777777766 3321 1112245667777777766
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.81 E-value=6.6e-09 Score=99.37 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=102.0
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCe
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV 210 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~ 210 (461)
...+|..++ ++|++|+|+++.+..++. + ..+++|++|+|.+ .+. . .....+.+++.|++|++.+ |...++
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~Ls~--n~l~~~ 115 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGIN-T-IEEDSFSSLGSLEHLDLSY--NYLSNL 115 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCC-E-ECTTTTTTCTTCCEEECCS--SCCSSC
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCccC-c-cCHhhcCCCCCCCEEECCC--CcCCcC
Confidence 445565443 589999999888766543 4 6789999999987 433 1 1122367789999999988 643332
Q ss_pred eEEEE-EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchh
Q 012521 211 QTINI-IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFEN 289 (461)
Q Consensus 211 ~~~~i-~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~ 289 (461)
..-.+ ..++|+.|.+.++..... .. ...+..+++|+.+++..+......
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l---~~-------------------~~~~~~l~~L~~L~l~~n~~~~~~-------- 165 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTL---GE-------------------TSLFSHLTKLQILRVGNMDTFTKI-------- 165 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSS---CS-------------------SCSCTTCTTCCEEEEEESSSCCEE--------
T ss_pred CHhHhCCCccCCEEECCCCCCccc---Cc-------------------hhhhccCCCCcEEECCCCcccccc--------
Confidence 21101 125566666554432210 00 011233444554444443111100
Q ss_pred hHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 290 DARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 290 ~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
....+.++++++.|+++. +.+.. .....+..+++|++|++..+..... ...++..+++|+.|+++.+.
T Consensus 166 -~~~~~~~l~~L~~L~l~~--n~l~~---~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 166 -QRKDFAGLTFLEELEIDA--SDLQS---YEPKSLKSIQNVSHLILHMKQHILL--LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -CTTTTTTCCEEEEEEEEE--TTCCE---ECTTTTTTCSEEEEEEEECSCSTTH--HHHHHHHTTTEEEEEEESCB
T ss_pred -CHHHccCCCCCCEEECCC--CCcCc---cCHHHHhccccCCeecCCCCccccc--hhhhhhhcccccEEECCCCc
Confidence 011245667777777776 44321 1123344566777777776643221 22345567888888888765
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=110.27 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=28.8
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+.++++|+.|++++ +.+.. ......+..+++|+.|++..+.... .....+..+|+|+.|+++.+.
T Consensus 441 ~~~l~~L~~L~l~~--n~l~~--~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 441 FNGLSSLEVLKMAG--NSFQE--NFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTTCTTCCEEECTT--CEEGG--GEECSCCTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSC
T ss_pred hhcCCcCcEEECcC--CcCcc--ccchhhhhcccCCCEEECCCCcccc--CChhhhhcccCCCEEeCCCCc
Confidence 34455566666655 33220 0011223344555555555442211 112234455666666665553
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.79 E-value=6e-10 Score=111.25 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=113.8
Q ss_pred cCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-Ec
Q 012521 142 LTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IV 217 (461)
Q Consensus 142 ~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~ 217 (461)
..+++|++|+|.++.+..+. .+ ..+++|++|+|.+ .+.+ .....+..++.|+.|++.+ +...++....+ ..
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~--n~i~~~~~~~~~~l 199 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRH--LNINAIRDYSFKRL 199 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCEEEEES--CCCCEECTTCSCSC
T ss_pred cccccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcc--cChhHhcccCCCcEEeCCC--CcCcEeChhhcccC
Confidence 33666666666665543322 23 4566777777766 3321 1123456677777777776 43222211111 23
Q ss_pred CCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce---EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHH
Q 012521 218 QTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF---VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSA 294 (461)
Q Consensus 218 ~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 294 (461)
++|+.|.+.++..... ........++|++|+++++..... .+..+++|+.++++.+.... .....
T Consensus 200 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------~~~~~ 267 (477)
T 2id5_A 200 YRLKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST----------IEGSM 267 (477)
T ss_dssp TTCCEEEEECCTTCCE--ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE----------ECTTS
T ss_pred cccceeeCCCCccccc--cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc----------cChhh
Confidence 6777787776543210 000011234788888887654433 25677888888776543221 11123
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+..+++|+.|.|+. +.+..+ ....+..+++|+.|++..+..... ....+..+++|+.|+++++.
T Consensus 268 ~~~l~~L~~L~L~~--n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 268 LHELLRLQEIQLVG--GQLAVV---EPYAFRGLNYLRVLNVSGNQLTTL--EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCTTCCEEECCS--SCCSEE---CTTTBTTCTTCCEEECCSSCCSCC--CGGGBSCGGGCCEEECCSSC
T ss_pred ccccccCCEEECCC--CccceE---CHHHhcCcccCCEEECCCCcCcee--CHhHcCCCcccCEEEccCCC
Confidence 56788999999998 554322 233455677888888888743221 22356778999999998876
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.78 E-value=1.7e-10 Score=118.81 Aligned_cols=125 Identities=11% Similarity=0.001 Sum_probs=70.7
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-EcC
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IVQ 218 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~~ 218 (461)
+..+++|++|++.++.+..++.+ ..+++|++|++.+ .+. .+..+ .+|.|++|++.+ | .....+.. ..+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l-~~~~~L~~L~l~~n~l~---~lp~~--~l~~L~~L~l~~--n--~~~~~~~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDV-PKHFKWQSLSIIRCQLK---QFPTL--DLPFLKSLTLTM--N--KGSISFKKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCC-CTTCCCSEEEEESCCCS---SCCCC--CCSSCCEEEEES--C--SSCEECCCCCCT
T ss_pred cccCCCCCEEEecCccchhhhhc-cccccCCEEEcccccCc---ccccC--CCCccceeeccC--C--cCccchhhccCC
Confidence 44477888888888877666655 6677888888887 432 22222 778888888877 4 22322222 236
Q ss_pred CcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc--eEeecCCCeeEEEEEEE
Q 012521 219 TLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY--FVLDEIPFLKKAFVLVE 275 (461)
Q Consensus 219 sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~--~~~~~~~~L~~~~l~~~ 275 (461)
+|+.|.+.++...............++|++|+++++.... ..+..+++|+.+.+..+
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC
Confidence 7777777665432100000011234677777776654322 12445666666655543
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.78 E-value=2.7e-10 Score=112.96 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=103.1
Q ss_pred ccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-E
Q 012521 141 ILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-I 216 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~ 216 (461)
+..+++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+. ......+..++.|++|+|.+ +....+....+ .
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~ 169 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNWLT--VIPSGAFEYLSKLRELWLRN--NPIESIPSYAFNR 169 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCS--BCCTTTSSSCTTCCEEECCS--CCCCEECTTTTTT
T ss_pred cCCCCCCCEEECCCCccCCcChhhc-cCcccCCEEECCCCcCC--ccChhhhcccCCCCEEECCC--CCcceeCHhHHhc
Confidence 344777777777777664433 33 5677777777776 332 11112355677777777776 43221110000 1
Q ss_pred cCCcceEEEEEEeecCcccceeEE----EecCCccEEEEeecccCce-EeecCCCeeEEEEEEEEceeecCCCCcchhhH
Q 012521 217 VQTLKRLSISVFVMQGYVSKRIFE----IRTPNLEYLSIIANSLAYF-VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDA 291 (461)
Q Consensus 217 ~~sL~~L~l~~~~~~~~~~~~~~~----~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~ 291 (461)
.++|+.|.+.+|... ..+. ...++|++|+++++..... .+..+++|+.++++.+.... ..
T Consensus 170 l~~L~~L~l~~~~~l-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~----------~~ 234 (452)
T 3zyi_A 170 VPSLMRLDLGELKKL-----EYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE----------IR 234 (452)
T ss_dssp CTTCCEEECCCCTTC-----CEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE----------EC
T ss_pred CCcccEEeCCCCCCc-----cccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc----------cC
Confidence 266777777654322 1111 1346677777766543322 24456666666554432211 11
Q ss_pred HHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 292 RSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 292 ~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
...+.++++|+.|.++. +.+..+ ....+..+++|+.|+|..+.... .....+..+++|+.|+|+++.
T Consensus 235 ~~~~~~l~~L~~L~L~~--n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMN--SQVSLI---ERNAFDGLASLVELNLAHNNLSS--LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp GGGGTTCTTCCEEECTT--SCCCEE---CTTTTTTCTTCCEEECCSSCCSC--CCTTSSTTCTTCCEEECCSSC
T ss_pred cccccCccCCCEEEeCC--CcCceE---CHHHhcCCCCCCEEECCCCcCCc--cChHHhccccCCCEEEccCCC
Confidence 12355667777777776 443322 12234455667777776663311 112234566777777777665
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.78 E-value=1.4e-10 Score=115.14 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=44.9
Q ss_pred cCCCCccEEEeceeeeccC-C-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEE--EE
Q 012521 142 LTCETLVELKLCSDIVIDI-P-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTIN--II 216 (461)
Q Consensus 142 ~~~~~L~~L~L~~~~l~~~-~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~--i~ 216 (461)
..+++|++|+|++|.+... + .+ ..+++|++|+|.+ .+.+...-...+..++.|++|++.+ |...++.... ..
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD--NNIKKIQPASFFLN 152 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS--SBCCSCCCCGGGGG
T ss_pred cccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC--CccCccCcccccCC
Confidence 3467777777776665432 2 33 5667777777766 3321111112355667777777776 5333322111 12
Q ss_pred cCCcceEEEEEEe
Q 012521 217 VQTLKRLSISVFV 229 (461)
Q Consensus 217 ~~sL~~L~l~~~~ 229 (461)
.++|+.|.+.++.
T Consensus 153 l~~L~~L~L~~n~ 165 (455)
T 3v47_A 153 MRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCCEEECTTCC
T ss_pred CCcccEEeCCCCc
Confidence 3666666666554
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.77 E-value=3.6e-10 Score=115.43 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=147.2
Q ss_pred cCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE
Q 012521 137 LPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI 215 (461)
Q Consensus 137 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i 215 (461)
.|..+..+++|++|++.++.+..++.....+ +|++|++.+ .+.. +. ...+|.|+.|.+.+ |...+.... .
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~---l~--~~~l~~L~~L~l~~--n~~~~~~~~-~ 344 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ---FP--TLKLKSLKRLTFTS--NKGGNAFSE-V 344 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS---CC--BCBCSSCCEEEEES--CBSCCBCCC-C
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc---cC--cccccccCEEeCcC--Ccccccccc-c
Confidence 3444555788999999888877666442455 889999988 4431 11 14688899999888 532222111 3
Q ss_pred EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce--EeecCCCeeEEEEEEEEceeecCCCCcchhhHHH
Q 012521 216 IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF--VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARS 293 (461)
Q Consensus 216 ~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 293 (461)
..++|+.|.+.++...............++|++|+++++..... .+..+++|+.+.+..+..... ....
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~ 415 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM---------SEFS 415 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC---------TTSC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc---------cchh
Confidence 45888888887765321000000112458899998887643322 267788888887765433211 0111
Q ss_pred HhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCC
Q 012521 294 ALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNT 373 (461)
Q Consensus 294 ~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~ 373 (461)
.+..+++|+.|+++. +.+.. .....+..+++|+.|++..+.. ....+...+..+|+|+.|+++.+.-...
T Consensus 416 ~~~~l~~L~~L~l~~--n~l~~---~~~~~~~~l~~L~~L~l~~n~l-~~~~~p~~~~~l~~L~~L~l~~n~l~~~---- 485 (570)
T 2z63_A 416 VFLSLRNLIYLDISH--THTRV---AFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLEQL---- 485 (570)
T ss_dssp TTTTCTTCCEEECTT--SCCEE---CCTTTTTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTSCCCEE----
T ss_pred hhhcCCCCCEEeCcC--Ccccc---cchhhhhcCCcCcEEECcCCcC-ccccchhhhhcccCCCEEECCCCccccC----
Confidence 356788999999987 54322 1223345677888888877643 2123445678899999999998752110
Q ss_pred CCcccccccccccCCccccc--cccceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 374 LQDIVFEDLVCVEPECAPNC--LSSCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~--~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
.|.. ...+|+++.+.+..-. .+....+.+.+.|+.+.+..+.
T Consensus 486 ----------------~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 486 ----------------SPTAFNSLSSLQVLNMASNQLK----SVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ----------------CTTTTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------------ChhhhhcccCCCEEeCCCCcCC----CCCHHHhhcccCCcEEEecCCc
Confidence 0111 1346677766532211 0111234666777777777654
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.77 E-value=3.3e-10 Score=112.35 Aligned_cols=80 Identities=16% Similarity=0.036 Sum_probs=53.5
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeecc--CCC--CccccCCccEEEeee-ecCChhHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVID--IPG--SGICFPSLKILHFGF-CHPDRGLMQK 187 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~ 187 (461)
.++++|++.... .....|..+..+++|++|+|++|.+.. +.. + ..+++|++|+|.+ .+. ...-..
T Consensus 79 ~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~L~~n~l~-~~~~~~ 148 (455)
T 3v47_A 79 SSLIILKLDYNQ--------FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF-KPLTSLEMLVLRDNNIK-KIQPAS 148 (455)
T ss_dssp TTCCEEECTTCT--------TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT-TTCTTCCEEECCSSBCC-SCCCCG
T ss_pred ccCCEEeCCCCc--------cCccChhhccCcccCCEEeCCCCCCCccccCcccc-cCcccCCEEECCCCccC-ccCccc
Confidence 478888443322 112234556668999999999988754 222 4 6789999999998 443 222223
Q ss_pred HHhcCCccCeEEEee
Q 012521 188 FFSSCPTLEELTIEG 202 (461)
Q Consensus 188 l~~~cp~Le~L~L~~ 202 (461)
++.+++.|++|++.+
T Consensus 149 ~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 149 FFLNMRRFHVLDLTF 163 (455)
T ss_dssp GGGGCTTCCEEECTT
T ss_pred ccCCCCcccEEeCCC
Confidence 477889999999988
No 37
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.76 E-value=1.4e-10 Score=115.29 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=128.1
Q ss_pred ccCCcccCCCCccEEEeceeeeccC--CCCc----cccCCccEEEeee-ecCCh--hHHHHHHhcCCccCeEEEeeeecC
Q 012521 136 ELPQSILTCETLVELKLCSDIVIDI--PGSG----ICFPSLKILHFGF-CHPDR--GLMQKFFSSCPTLEELTIEGILHP 206 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~l~~~--~~~~----~~~~~L~~L~L~~-~~~~~--~~l~~l~~~cp~Le~L~L~~~~c~ 206 (461)
.+|..+..+++|++|+|++|.+... ..+. ...++|++|+|.+ .+.+. ..+...+..||.|++|++.+ |.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~--n~ 181 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN--ND 181 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS--SB
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC--CC
Confidence 4555666788899999988876431 1110 1245799999988 44322 24556677789999999988 53
Q ss_pred CCCeeEEEE------EcCCcceEEEEEEeecCcc--cceeEEEecCCccEEEEeecccCce--------EeecCCCeeEE
Q 012521 207 RDNVQTINI------IVQTLKRLSISVFVMQGYV--SKRIFEIRTPNLEYLSIIANSLAYF--------VLDEIPFLKKA 270 (461)
Q Consensus 207 ~~~~~~~~i------~~~sL~~L~l~~~~~~~~~--~~~~~~~~~p~L~~L~~~~~~~~~~--------~~~~~~~L~~~ 270 (461)
..+.....+ ..++|++|.+.+|...... .........++|++|+++++..... ....+++|+.+
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 221111011 1348888888877543210 0011112468899999887643221 11246788877
Q ss_pred EEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhh-hccCCCC-CCCccceEEEEeccC--CChhhH
Q 012521 271 FVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSF-VLNNNLP-TFSNLISLELHIDSC--FGWKLL 346 (461)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~-~~~~~~~-~~~~L~~L~l~~~~~--~~~~~l 346 (461)
.+..+..... ....+...+..++++++|+++. +.+..... .....+. ...+|++|++..+.. .....+
T Consensus 262 ~L~~n~l~~~------~~~~l~~~l~~~~~L~~L~Ls~--n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 262 WIWECGITAK------GCGDLCRVLRAKESLKELSLAG--NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp ECTTSCCCHH------HHHHHHHHHHHCTTCCEEECTT--CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred ECcCCCCCHH------HHHHHHHHHhhCCCcceEECCC--CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 6665432110 0022556677789999999988 55432211 1111111 234788888887753 123346
Q ss_pred HHHHhcCCCCeeEEEeecc
Q 012521 347 TPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 347 ~~ll~~~p~L~~L~l~~~~ 365 (461)
...+..+|+|+.|+++.+.
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHCSSCCEEECCSSB
T ss_pred HHHHhhCCCccEEEccCCc
Confidence 6777888999999988875
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.76 E-value=8.1e-11 Score=124.60 Aligned_cols=155 Identities=18% Similarity=0.110 Sum_probs=71.4
Q ss_pred ccCCcccCCCCccEEEeceeeecc-CC---CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCe
Q 012521 136 ELPQSILTCETLVELKLCSDIVID-IP---GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV 210 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~l~~-~~---~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~ 210 (461)
.+|..+..+++|++|+|++|.+.. +| .+ ..+++|++|+|.+ .+.. ..-..++..++.|++|++.+ |...+.
T Consensus 91 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~Ls~--n~l~~~ 166 (768)
T 3rgz_A 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL-GSCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSA--NSISGA 166 (768)
T ss_dssp ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGG-GGCTTCCEEECCSSEEEC-CSSCCSCCCCTTCSEEECCS--SCCEEE
T ss_pred CCchhhccCCCCCEEECCCCcCCCcCCChHHH-hCCCCCCEEECcCCccCC-cCCHHHhccCCCCCEEECCC--CccCCc
Confidence 344555556666666666655532 12 23 4566666666665 3221 11111224556666666665 321111
Q ss_pred eEEE----EEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc--eEeecCCCeeEEEEEEEEceeecCCC
Q 012521 211 QTIN----IIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY--FVLDEIPFLKKAFVLVEFNVLRRNSS 284 (461)
Q Consensus 211 ~~~~----i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~~ 284 (461)
.... -..++|+.|.+.++...+. .-....++|++|+++++.... ..+.++++|+.+++..+...
T Consensus 167 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~------ 236 (768)
T 3rgz_A 167 NVVGWVLSDGCGELKHLAISGNKISGD----VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS------ 236 (768)
T ss_dssp THHHHHHTTCCTTCCEEECCSSEEESC----CBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC------
T ss_pred CChhhhhhccCCCCCEEECCCCccccc----CCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC------
Confidence 0000 1225566666655543321 001334566666665543221 11455566666555443221
Q ss_pred CcchhhHHHHhhcCCCceEEEEec
Q 012521 285 GIFENDARSALELVKRIKSMKILS 308 (461)
Q Consensus 285 ~~~~~~~~~~l~~~~~l~~L~l~~ 308 (461)
..+...+..+++|+.|+++.
T Consensus 237 ----~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 237 ----GDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp ----SCHHHHTTTCSSCCEEECCS
T ss_pred ----CcccHHHhcCCCCCEEECCC
Confidence 22334455666666666665
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.75 E-value=1.1e-08 Score=103.97 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=43.2
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKA 366 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 366 (461)
+..+++|+.|+++. +.+..........+..+++|+.|++..+...........+..+++|+.|+++.+..
T Consensus 330 ~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 330 SQHLKSLEFLDLSE--NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp HHHCTTCCEEECCS--SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HhcCccccEEEccC--CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 35677778888776 54432111111223456788888887775433333335578889999999988763
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.75 E-value=1.1e-09 Score=108.39 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=99.2
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEE-cC
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINII-VQ 218 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~-~~ 218 (461)
+..+++|++|+++++.+..+|.+ ..+++|++|+|.+ .+.+- . +..++.|+.|++.+ |...++. +. .+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l-~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~--N~l~~~~---~~~l~ 106 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGI-EKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDS--NKLTNLD---VTPLT 106 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTG-GGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCS--SCCSCCC---CTTCT
T ss_pred hhHcCCCCEEEccCCCcccChhh-cccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcC--CCCceee---cCCCC
Confidence 34588999999999999887777 8899999999999 55432 2 67899999999999 7554442 32 37
Q ss_pred CcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcC
Q 012521 219 TLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELV 298 (461)
Q Consensus 219 sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (461)
+|+.|.+.++..... . .-..++|++|.++++......++.+++|+.+.+..+...... -+..+
T Consensus 107 ~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~------------~~~~l 169 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL------------DVTPQ 169 (457)
T ss_dssp TCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC------------CCTTC
T ss_pred cCCEEECCCCcCCee---c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc------------ccccC
Confidence 899999988754421 1 234588999999887666666777888888776554221110 13445
Q ss_pred CCceEEEEec
Q 012521 299 KRIKSMKILS 308 (461)
Q Consensus 299 ~~l~~L~l~~ 308 (461)
++++.|+++.
T Consensus 170 ~~L~~L~ls~ 179 (457)
T 3bz5_A 170 TQLTTLDCSF 179 (457)
T ss_dssp TTCCEEECCS
T ss_pred CcCCEEECCC
Confidence 6666666665
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.75 E-value=3.1e-09 Score=107.28 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=49.6
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeecc--CC-CCccccCCccEEEeee-ecCChhHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVID--IP-GSGICFPSLKILHFGF-CHPDRGLMQKF 188 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l 188 (461)
..+++|++.... ...+|.. .+++|++|+|++|.+.. .| .+ ..+++|++|+|.+ .+. .. .
T Consensus 69 ~~L~~L~Ls~N~---------l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~-~~----~ 131 (520)
T 2z7x_B 69 QELEYLDLSHNK---------LVKISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLE-KS----S 131 (520)
T ss_dssp TTCCEEECCSSC---------CCEEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCC-GG----G
T ss_pred cCCCEEecCCCc---------eeecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccc-hh----h
Confidence 477888554432 3356655 68889999999888754 23 34 6788999999988 443 32 2
Q ss_pred HhcCCcc--CeEEEee
Q 012521 189 FSSCPTL--EELTIEG 202 (461)
Q Consensus 189 ~~~cp~L--e~L~L~~ 202 (461)
+..++.| +.|++.+
T Consensus 132 ~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVL 147 (520)
T ss_dssp GGGGTTSCEEEEEEEE
T ss_pred ccccccceeeEEEeec
Confidence 4556777 8888877
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.74 E-value=1.6e-08 Score=102.81 Aligned_cols=226 Identities=17% Similarity=0.152 Sum_probs=142.0
Q ss_pred cCccEEEEEEeecccccccceeccc-CCcccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILEL-PQSILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKF 188 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l 188 (461)
..+++|++.... ...+ |..+..+++|++|+|++|.+...+ .+ ..+++|++|+|.+ .+. +.....
T Consensus 26 ~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~--~~~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNK---------ITYIGHGDLRACANLQVLILKSSRINTIEGDAF-YSLGSLEHLDLSDNHLS--SLSSSW 93 (549)
T ss_dssp TTCCEEECCSSC---------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCC--SCCHHH
T ss_pred CCccEEECcCCc---------cCccChhhhhcCCcccEEECCCCCcCccChhhc-cccccCCEEECCCCccC--ccCHHH
Confidence 467888554332 2233 344566999999999999886544 35 7889999999998 443 222334
Q ss_pred HhcCCccCeEEEeeeecCCCCee--EEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce---Eeec
Q 012521 189 FSSCPTLEELTIEGILHPRDNVQ--TINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF---VLDE 263 (461)
Q Consensus 189 ~~~cp~Le~L~L~~~~c~~~~~~--~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~---~~~~ 263 (461)
+.+++.|++|++.+ |...++. ..--..++|+.|.+.++...+... .......++|++|+++++..... .+..
T Consensus 94 ~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 94 FGPLSSLKYLNLMG--NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HTTCTTCCEEECTT--CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hccCCCCcEEECCC--CcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhhhc
Confidence 78899999999998 6443321 111124789999999875321000 00112357899999988755432 3455
Q ss_pred CCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccC--C
Q 012521 264 IPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSC--F 341 (461)
Q Consensus 264 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~--~ 341 (461)
+++|+.+.+...... .....++..+++++.|+++. +.+.............+.+|++|++..+.. .
T Consensus 171 l~~L~~L~l~~n~~~----------~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 171 IRDIHHLTLHLSESA----------FLLEIFADILSSVRYLELRD--TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CSEEEEEEEECSBST----------THHHHHHHSTTTBSEEEEES--CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred cccCceEecccCccc----------ccchhhHhhcccccEEEccC--Cccccccccccchhhhhhcccceeccccccchh
Confidence 777887776654321 22233456789999999998 655432101111223567888888887643 1
Q ss_pred ChhhHHHHHhcCCCCeeEEEeecc
Q 012521 342 GWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 342 ~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
....+...+..+++|+.|.+..+.
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCE
T ss_pred HHHHHHHHhhhhcccccccccccc
Confidence 233455566788889998888775
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.74 E-value=2.9e-10 Score=117.11 Aligned_cols=213 Identities=15% Similarity=0.075 Sum_probs=116.4
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
.+++.+++.... ...+| .+..+++|++|++.+|.+..+|.+ .+++|++|++.+ ...... -+..
T Consensus 285 ~~L~~L~l~~~~---------~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~----~~~~ 348 (606)
T 3vq2_A 285 ANVSAMSLAGVS---------IKYLE-DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF----KKVA 348 (606)
T ss_dssp TTCSEEEEESCC---------CCCCC-CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEEC----CCCC
T ss_pred CCCCEEEecCcc---------chhhh-hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccch----hhcc
Confidence 578888554433 33455 555678888888888887666644 778888888887 333222 2456
Q ss_pred CCccCeEEEeeeecCCCCeeEEE------EEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc----eEe
Q 012521 192 CPTLEELTIEGILHPRDNVQTIN------IIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY----FVL 261 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~~~~------i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~----~~~ 261 (461)
+|.|+.|++.+ |. +..+. ...++|+.|.+.+|.... ........++|++|+++++.... ..+
T Consensus 349 l~~L~~L~ls~--n~---l~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 349 LPSLSYLDLSR--NA---LSFSGCCSYSDLGTNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp CTTCCEEECCS--SC---EEEEEECCHHHHCCSCCCEEECCSCSEEE---ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred CCCCCEEECcC--Cc---cCCCcchhhhhccCCcccEeECCCCcccc---chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 78888888877 43 22221 123677888777664321 01112235777777777653321 134
Q ss_pred ecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCC
Q 012521 262 DEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCF 341 (461)
Q Consensus 262 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (461)
.++++|+.+++..+..... ....+..+++|+.|+++. +.+.. ......+..+.+|+.|++..+...
T Consensus 421 ~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~--n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKID----------FDGIFLGLTSLNTLKMAG--NSFKD--NTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp TTCTTCCEEECTTSCCEEC----------CTTTTTTCTTCCEEECTT--CEEGG--GEECSCCTTCTTCCEEECTTSCCC
T ss_pred hccccCCEEECcCCCCCcc----------chhhhcCCCCCCEEECCC--CcCCC--cchHHhhccCCCCCEEECCCCcCC
Confidence 5567777766655432211 111245566666776665 43321 011223344556666665554321
Q ss_pred ChhhHHHHHhcCCCCeeEEEeecc
Q 012521 342 GWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 342 ~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
. .....+..+++|+.|+++.+.
T Consensus 487 ~--~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 487 Q--ISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp E--ECTTTTTTCTTCCEEECCSSC
T ss_pred c--cChhhhcccccCCEEECCCCc
Confidence 1 112234556666666666654
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.74 E-value=8.9e-10 Score=113.99 Aligned_cols=206 Identities=9% Similarity=0.044 Sum_probs=129.7
Q ss_pred cCCccc--CCCCccEEEeceeeec-cCC-CCccccCCccEEEeee-ecCChhHHHHHH------hcCCccCeEEEeeeec
Q 012521 137 LPQSIL--TCETLVELKLCSDIVI-DIP-GSGICFPSLKILHFGF-CHPDRGLMQKFF------SSCPTLEELTIEGILH 205 (461)
Q Consensus 137 lp~~l~--~~~~L~~L~L~~~~l~-~~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~------~~cp~Le~L~L~~~~c 205 (461)
+|..+. .+++|++|+|.+|.+. .+| .+ ..+++|++|+|.+ ...+...+..-+ ..++.|+.|++.+ |
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~--n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY--N 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS--S
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC--C
Confidence 888888 8999999999999753 334 44 7899999999998 423331232222 3469999999999 6
Q ss_pred CCCCeeE--EEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce--EeecCCC-eeEEEEEEEEceee
Q 012521 206 PRDNVQT--INIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF--VLDEIPF-LKKAFVLVEFNVLR 280 (461)
Q Consensus 206 ~~~~~~~--~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~--~~~~~~~-L~~~~l~~~~~~~~ 280 (461)
....+.. .--..++|+.|.+.++...+. .. .....++|++|+++++....+ .+.++++ |+.++++.+....
T Consensus 316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~--ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~- 391 (636)
T 4eco_A 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGK--LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY- 391 (636)
T ss_dssp CCSSCCCHHHHTTCTTCCEEECCSCCCEEE--CC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-
T ss_pred cCCccCchhhhccCCCCCEEeCcCCcCccc--hh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-
Confidence 5433322 111237899999987754311 11 223457899999987644322 2456677 8887766543221
Q ss_pred cCCCCcchhhHHHHhhc--CCCceEEEEecCCChHHHhhhhccCCCC-------CCCccceEEEEeccCCChhhHHHHHh
Q 012521 281 RNSSGIFENDARSALEL--VKRIKSMKILSLPDSMTVLSFVLNNNLP-------TFSNLISLELHIDSCFGWKLLTPFLK 351 (461)
Q Consensus 281 ~~~~~~~~~~~~~~l~~--~~~l~~L~l~~~~~~~~~l~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~l~~ll~ 351 (461)
+...+.. +++++.|+++. +.+... ....++ .+.+|++|++..+.... .-..++.
T Consensus 392 ----------lp~~~~~~~l~~L~~L~Ls~--N~l~~~---~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~ 454 (636)
T 4eco_A 392 ----------IPNIFDAKSVSVMSAIDFSY--NEIGSV---DGKNFDPLDPTPFKGINVSSINLSNNQISK--FPKELFS 454 (636)
T ss_dssp ----------CCSCCCTTCSSCEEEEECCS--SCTTTT---TTCSSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHH
T ss_pred ----------cchhhhhcccCccCEEECcC--CcCCCc---chhhhcccccccccCCCCCEEECcCCccCc--CCHHHHc
Confidence 1111222 34789999987 554321 112222 45588888888775422 2234566
Q ss_pred cCCCCeeEEEeeccc
Q 012521 352 RSPSLKVLNLDFSKA 366 (461)
Q Consensus 352 ~~p~L~~L~l~~~~~ 366 (461)
.+++|+.|+++.+.-
T Consensus 455 ~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 455 TGSPLSSINLMGNML 469 (636)
T ss_dssp TTCCCSEEECCSSCC
T ss_pred cCCCCCEEECCCCCC
Confidence 789999999988763
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.73 E-value=6.1e-10 Score=114.73 Aligned_cols=211 Identities=16% Similarity=0.177 Sum_probs=119.6
Q ss_pred cccCCcccCCCCccEEEeceeeeccC-C-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCee
Q 012521 135 LELPQSILTCETLVELKLCSDIVIDI-P-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQ 211 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~l~~~-~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~ 211 (461)
..+|..+..+++|++|+|.+|.+... + .+ ..+++|++|++.+ ... ...-...+..++.|++|++.+ |...+..
T Consensus 291 ~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~--n~l~~~~ 366 (606)
T 3t6q_A 291 SELPSGLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKR-LELGTGCLENLENLRELDLSH--DDIETSD 366 (606)
T ss_dssp SCCCSSCCSCTTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSC-CBCCSSTTTTCTTCCEEECCS--SCCCEEE
T ss_pred CCCChhhcccccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcc-cccchhhhhccCcCCEEECCC--Ccccccc
Confidence 36777777788888888888876543 2 33 6788888888887 332 111112356788888888887 5322221
Q ss_pred E--EEE-EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc----eEeecCCCeeEEEEEEEEceeecCCC
Q 012521 212 T--INI-IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY----FVLDEIPFLKKAFVLVEFNVLRRNSS 284 (461)
Q Consensus 212 ~--~~i-~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~~ 284 (461)
. ..+ ..++|+.|.+.++..... ........++|++|+++++.... ..+..+++|+.+.+..+....
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----- 439 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSL--KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI----- 439 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEE--CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT-----
T ss_pred CcchhcccCCCCCEEECCCCcCCcC--CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC-----
Confidence 0 001 236788888876642210 00011235778888887654321 124567777777665543211
Q ss_pred CcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeec
Q 012521 285 GIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 285 ~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
.....+..+++|+.|++++ +.+..........+..+++|+.|++..+.... .....+..+|+|+.|+++++
T Consensus 440 -----~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 440 -----SSEQLFDGLPALQHLNLQG--NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp -----TCTTTTTTCTTCCEEECTT--CBCGGGEECSSCGGGGCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS
T ss_pred -----cCHHHHhCCCCCCEEECCC--CCCCccccccchhhccCCCccEEECCCCccCc--cChhhhccccCCCEEECCCC
Confidence 1122355677888888887 54432100111234566777777777664311 12234567788888888876
Q ss_pred c
Q 012521 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
.
T Consensus 511 ~ 511 (606)
T 3t6q_A 511 R 511 (606)
T ss_dssp C
T ss_pred c
Confidence 5
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.72 E-value=3.8e-10 Score=111.46 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=94.3
Q ss_pred cCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-Ec
Q 012521 142 LTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IV 217 (461)
Q Consensus 142 ~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~ 217 (461)
..+++|++|+|++|.+..++ .+ ..+++|++|+|.+ .+.. .....+..++.|++|+|.+ +....+....+ ..
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRN--NPIESIPSYAFNRI 159 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSSCCSS--CCTTTSCSCSSCCEEECCS--CCCCEECTTTTTTC
T ss_pred hCCCCCCEEECCCCcCCccChhhc-cCCccCCEEECCCCcCCe--eCHhHhhccccCceeeCCC--CcccccCHHHhhhC
Confidence 33666666666666554433 22 4566666666665 3221 1112245566666666666 42211110000 12
Q ss_pred CCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce-EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhh
Q 012521 218 QTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF-VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALE 296 (461)
Q Consensus 218 ~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
++|+.|.+.++....... .......++|++|+++++....+ .+..+++|+.++++.+.... .....+.
T Consensus 160 ~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~~~ 228 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA----------IRPGSFQ 228 (440)
T ss_dssp TTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE----------ECTTTTT
T ss_pred cccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc----------cChhhhc
Confidence 566666665543221000 00011245666666665533321 23445566665554432211 0111345
Q ss_pred cCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 297 LVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 297 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
++++|+.|.++. +.+..+ ....+..+++|+.|+|..+.... .....+..+++|+.|+|+++.
T Consensus 229 ~l~~L~~L~L~~--n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQ--SQIQVI---ERNAFDNLQSLVEINLAHNNLTL--LPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTT--CCCCEE---CTTSSTTCTTCCEEECTTSCCCC--CCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCC--CceeEE---ChhhhcCCCCCCEEECCCCCCCc--cChhHhccccCCCEEEcCCCC
Confidence 566777777766 443322 12233455666666666653211 112234566777777777665
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.69 E-value=1.2e-09 Score=103.60 Aligned_cols=217 Identities=13% Similarity=0.130 Sum_probs=133.0
Q ss_pred cCccEEEEEEeecccccccceeccc-CCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHh
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILEL-PQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFS 190 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~ 190 (461)
.++++|++.... ...+ |..+..+++|++|+|+++.+..++.. .+++|++|++.+ .+. ......+.
T Consensus 76 ~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~~L~~L~l~~n~l~--~~~~~~~~ 142 (330)
T 1xku_A 76 KNLHTLILINNK---------ISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEIT--KVRKSVFN 142 (330)
T ss_dssp TTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCC--BBCHHHHT
T ss_pred CCCCEEECCCCc---------CCeeCHHHhcCCCCCCEEECCCCcCCccChh--hcccccEEECCCCccc--ccCHhHhc
Confidence 578888554332 2333 45556689999999999888766643 348999999988 443 22234578
Q ss_pred cCCccCeEEEeeeecCCCC--eeEEEE-EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce---EeecC
Q 012521 191 SCPTLEELTIEGILHPRDN--VQTINI-IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF---VLDEI 264 (461)
Q Consensus 191 ~cp~Le~L~L~~~~c~~~~--~~~~~i-~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~---~~~~~ 264 (461)
+++.|+.|++.+ |.... .....+ ..++|+.|.+.++...... . ...++|++|+++++..... .+..+
T Consensus 143 ~l~~L~~L~l~~--n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~---~~~~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 143 GLNQMIVVELGT--NPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--Q---GLPPSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp TCTTCCEEECCS--SCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--S---SCCTTCSEEECTTSCCCEECTGGGTTC
T ss_pred CCccccEEECCC--CcCCccCcChhhccCCCCcCEEECCCCccccCC--c---cccccCCEEECCCCcCCccCHHHhcCC
Confidence 899999999988 54321 111011 2378888888876543210 1 1127899999887654432 35677
Q ss_pred CCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCCh-
Q 012521 265 PFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGW- 343 (461)
Q Consensus 265 ~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~- 343 (461)
++|+.+.++.+..... ....+..+++|+.|+++. +.+..+ ...+..+++|++|++..+.....
T Consensus 216 ~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~--N~l~~l----p~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 216 NNLAKLGLSFNSISAV----------DNGSLANTPHLRELHLNN--NKLVKV----PGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TTCCEEECCSSCCCEE----------CTTTGGGSTTCCEEECCS--SCCSSC----CTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCCEEECCCCcCcee----------ChhhccCCCCCCEEECCC--CcCccC----ChhhccCCCcCEEECCCCcCCccC
Confidence 8888887765433211 111356788999999998 655422 22345667888888887643111
Q ss_pred -hhHH--HHHhcCCCCeeEEEeecc
Q 012521 344 -KLLT--PFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 344 -~~l~--~ll~~~p~L~~L~l~~~~ 365 (461)
.... ......+.|+.|.+.++.
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhhcCCcccccccccccceEeecCc
Confidence 1111 011235788888888775
No 48
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.67 E-value=3.1e-10 Score=120.10 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCccEEEEeecccCc---eEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhc
Q 012521 244 PNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVL 320 (461)
Q Consensus 244 p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~ 320 (461)
++|++|.++++.... ..+.++++|+.+++..+.... .+...+..+++|+.|+++. +.+.. ..
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~----------~~p~~l~~l~~L~~L~L~~--n~l~~---~~ 458 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG----------TIPSSLGSLSKLRDLKLWL--NMLEG---EI 458 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES----------CCCGGGGGCTTCCEEECCS--SCCCS---CC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC----------cccHHHhcCCCCCEEECCC--CcccC---cC
Confidence 456666665543221 123455666665554433221 1112345566677777765 33321 11
Q ss_pred cCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCCCCcccccccccccCCccccc--cccce
Q 012521 321 NNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTLQDIVFEDLVCVEPECAPNC--LSSCV 398 (461)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L 398 (461)
...+..+++|+.|++..+.... .++..+.++++|+.|+++.+.... . .|.. ...+|
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~------------------~--~p~~~~~l~~L 516 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTG------------------E--IPKWIGRLENL 516 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCS------------------C--CCGGGGGCTTC
T ss_pred CHHHcCCCCceEEEecCCcccC--cCCHHHhcCCCCCEEEccCCccCC------------------c--CChHHhcCCCC
Confidence 1223345666766666653311 133345677777777777765200 0 2211 23567
Q ss_pred EEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 399 EVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 399 ~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
+++.+.+..-.. .+..-+.+.+.|+.+.+..+.
T Consensus 517 ~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 517 AILKLSNNSFSG----NIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CEEECCSSCCEE----ECCGGGGGCTTCCEEECCSSE
T ss_pred CEEECCCCcccC----cCCHHHcCCCCCCEEECCCCc
Confidence 777776432110 011235677888888887554
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=1.8e-09 Score=114.48 Aligned_cols=209 Identities=8% Similarity=-0.016 Sum_probs=128.2
Q ss_pred cCCccc--CCCCccEEEeceeee-ccCCCCccccCCccEEEeee-ecCCh----hHHHHH---HhcCCccCeEEEeeeec
Q 012521 137 LPQSIL--TCETLVELKLCSDIV-IDIPGSGICFPSLKILHFGF-CHPDR----GLMQKF---FSSCPTLEELTIEGILH 205 (461)
Q Consensus 137 lp~~l~--~~~~L~~L~L~~~~l-~~~~~~~~~~~~L~~L~L~~-~~~~~----~~l~~l---~~~cp~Le~L~L~~~~c 205 (461)
+|..+. .+++|++|+|++|.+ ..+|..-..+++|++|+|.+ ...+. ..+..+ +..+|.|+.|+|.+ |
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~--N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY--N 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS--S
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC--C
Confidence 888887 799999999999875 33443227899999999998 42333 233332 24678999999999 6
Q ss_pred CCCCeeE--EEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceE--eecCCC-eeEEEEEEEEceee
Q 012521 206 PRDNVQT--INIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFV--LDEIPF-LKKAFVLVEFNVLR 280 (461)
Q Consensus 206 ~~~~~~~--~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~--~~~~~~-L~~~~l~~~~~~~~ 280 (461)
....+.. .--..++|+.|.+.++.... .. ..-..++|+.|+++++....+. +.++++ |+.+.+..+....
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~---lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~- 633 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRH---LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY- 633 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCB---CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCccc---ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-
Confidence 5433222 11123789999998775431 12 2234588999999887554322 456677 8887776553221
Q ss_pred cCCCCcchhhHHHHhhcC--CCceEEEEecCCChHHHhhhhccCCCC--CCCccceEEEEeccCCChhhHHHHHhcCCCC
Q 012521 281 RNSSGIFENDARSALELV--KRIKSMKILSLPDSMTVLSFVLNNNLP--TFSNLISLELHIDSCFGWKLLTPFLKRSPSL 356 (461)
Q Consensus 281 ~~~~~~~~~~~~~~l~~~--~~l~~L~l~~~~~~~~~l~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L 356 (461)
+...+... ++|+.|+++. +.+............ ...+|+.|++..+.... .-..++..+|+|
T Consensus 634 ----------lp~~~~~~~~~~L~~L~Ls~--N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L 699 (876)
T 4ecn_A 634 ----------IPNIFNAKSVYVMGSVDFSY--NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPI 699 (876)
T ss_dssp ----------CCSCCCTTCSSCEEEEECCS--SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCC
T ss_pred ----------CchhhhccccCCCCEEECcC--CcCCCccccchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCC
Confidence 11112222 3488999987 554321000001111 23478888888775422 223455688999
Q ss_pred eeEEEeeccc
Q 012521 357 KVLNLDFSKA 366 (461)
Q Consensus 357 ~~L~l~~~~~ 366 (461)
+.|+++.+.-
T Consensus 700 ~~L~Ls~N~L 709 (876)
T 4ecn_A 700 STIILSNNLM 709 (876)
T ss_dssp SEEECCSCCC
T ss_pred CEEECCCCcC
Confidence 9999988763
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.66 E-value=2.6e-09 Score=101.24 Aligned_cols=199 Identities=14% Similarity=0.093 Sum_probs=102.6
Q ss_pred ccCCCCccEEEeceeeeccC-C-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-E
Q 012521 141 ILTCETLVELKLCSDIVIDI-P-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-I 216 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~-~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~ 216 (461)
+..+++|++|+|++|.+..+ + .+ ..+++|++|+|.+ .+.. +. ...++.|++|++.+ |...++..-.+ .
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~---l~--~~~~~~L~~L~l~~--n~l~~~~~~~~~~ 143 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKE---LP--EKMPKTLQELRVHE--NEITKVRKSVFNG 143 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCSB---CC--SSCCTTCCEEECCS--SCCCBBCHHHHTT
T ss_pred hccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCCcCCc---cC--hhhcccccEEECCC--CcccccCHhHhcC
Confidence 33466677777766665443 2 23 5566677777665 3221 00 01125666666666 43222211001 1
Q ss_pred cCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhh
Q 012521 217 VQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALE 296 (461)
Q Consensus 217 ~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
.++|+.|.+.++...............++|++|+++++........-.++|+.+.+..+.... .....+.
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~----------~~~~~~~ 213 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK----------VDAASLK 213 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE----------ECTGGGT
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc----------cCHHHhc
Confidence 356666666655432100000111234667777776654433322223566665544332111 1112356
Q ss_pred cCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 297 LVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 297 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.+++|+.|+++. +.+..+ ....+..+++|++|++..+... .+..-+..+|+|+.|+++.+.
T Consensus 214 ~l~~L~~L~Ls~--n~l~~~---~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 214 GLNNLAKLGLSF--NSISAV---DNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TCTTCCEEECCS--SCCCEE---CTTTGGGSTTCCEEECCSSCCS---SCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCCCEEECCC--CcCcee---ChhhccCCCCCCEEECCCCcCc---cCChhhccCCCcCEEECCCCc
Confidence 778888888887 554322 1223445678888888877432 333346778899999888875
No 51
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.66 E-value=4.4e-10 Score=109.06 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=93.1
Q ss_pred ccCCccEEEeee-ecCChh---HHHHHHhcCCccCeEEEeeeecCCCCeeEEEEE-----c---------CCcceEEEEE
Q 012521 166 CFPSLKILHFGF-CHPDRG---LMQKFFSSCPTLEELTIEGILHPRDNVQTINII-----V---------QTLKRLSISV 227 (461)
Q Consensus 166 ~~~~L~~L~L~~-~~~~~~---~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~-----~---------~sL~~L~l~~ 227 (461)
.+++|++|+|.+ .+. +. .+...+..||.|+.|+|.+ |.........+. . ++|+.|.+.+
T Consensus 92 ~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~L~~L~L~~--n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFG-PTAQEPLIDFLSKHTPLEHLYLHN--NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TCTTCCEEECCSCCCC-TTTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred hCCcccEEECCCCcCC-HHHHHHHHHHHHhCCCCCEEECcC--CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 456666666666 332 22 2334455666666666666 432111000010 1 5666666665
Q ss_pred EeecCcccce---eEEEecCCccEEEEeecccCc-------e-EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhh
Q 012521 228 FVMQGYVSKR---IFEIRTPNLEYLSIIANSLAY-------F-VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALE 296 (461)
Q Consensus 228 ~~~~~~~~~~---~~~~~~p~L~~L~~~~~~~~~-------~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
|..... ... ......++|++|.++++.... . .+..+++|+.+.+..+..... ....+...+.
T Consensus 169 n~l~~~-~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~------g~~~l~~~l~ 241 (386)
T 2ca6_A 169 NRLENG-SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL------GSSALAIALK 241 (386)
T ss_dssp SCCTGG-GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH------HHHHHHHHGG
T ss_pred CCCCcH-HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH------HHHHHHHHHc
Confidence 543210 001 111234567777776653321 0 234566777665554332100 0023445567
Q ss_pred cCCCceEEEEecCCChHHHhhhh-ccCCC--CCCCccceEEEEeccCCC--hhhHHHHH-hcCCCCeeEEEeecc
Q 012521 297 LVKRIKSMKILSLPDSMTVLSFV-LNNNL--PTFSNLISLELHIDSCFG--WKLLTPFL-KRSPSLKVLNLDFSK 365 (461)
Q Consensus 297 ~~~~l~~L~l~~~~~~~~~l~~~-~~~~~--~~~~~L~~L~l~~~~~~~--~~~l~~ll-~~~p~L~~L~l~~~~ 365 (461)
.+++|+.|.|+. +.+...... ....+ ..+++|++|+|..+.... ...+...+ .++|+|+.|+++++.
T Consensus 242 ~~~~L~~L~L~~--n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 242 SWPNLRELGLND--CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GCTTCCEEECTT--CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCCcCEEECCC--CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 778888888887 544322111 11122 226678888887764411 12344444 567888888888775
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.66 E-value=8.2e-10 Score=102.36 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=62.6
Q ss_pred cCCccEEEEeecccCceE---eecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhh
Q 012521 243 TPNLEYLSIIANSLAYFV---LDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFV 319 (461)
Q Consensus 243 ~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~ 319 (461)
.++|++|+++++...... +..+++|+.+++..+.... .....+..+++|+.|+++. +.+...
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~l~~L~~L~l~~--n~l~~~--- 192 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS----------VPERAFRGLHSLDRLLLHQ--NRVAHV--- 192 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE----------ECTTTTTTCTTCCEEECCS--SCCCEE---
T ss_pred CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc----------cCHHHhcCccccCEEECCC--Cccccc---
Confidence 456666666654333221 3455666666554432211 0111255678899999987 554322
Q ss_pred ccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 320 LNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
....+..+++|+.|++..+.... .....+..+|+|+.|+++++.
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCSSC
T ss_pred CHhHccCcccccEeeCCCCcCCc--CCHHHcccCcccCEEeccCCC
Confidence 23345567788888888774322 223457788999999998876
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=7.5e-10 Score=117.41 Aligned_cols=224 Identities=11% Similarity=0.118 Sum_probs=133.3
Q ss_pred CccEEEEEEeecccccccceecccCC--cccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHh
Q 012521 114 NVRHLFLDVYSTSNFTRHKRILELPQ--SILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFS 190 (461)
Q Consensus 114 ~l~~L~l~~~~~~~~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~ 190 (461)
+++.|++.... ...+|. .+..+++|++|+|++|.+..+|.+ ..+++|+.|+|.+ .+. .+..-+.
T Consensus 549 ~L~~L~Ls~N~---------L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~-~~L~~L~~L~Ls~N~l~---~lp~~l~ 615 (876)
T 4ecn_A 549 KIQIFYMGYNN---------LEEFPASASLQKMVKLGLLDCVHNKVRHLEAF-GTNVKLTDLKLDYNQIE---EIPEDFC 615 (876)
T ss_dssp TCCEEECCSSC---------CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCC-CTTSEESEEECCSSCCS---CCCTTSC
T ss_pred CccEEEeeCCc---------CCccCChhhhhcCCCCCEEECCCCCcccchhh-cCCCcceEEECcCCccc---cchHHHh
Confidence 67777444332 237777 677788999999998887777766 7788999999988 433 2333366
Q ss_pred cCCc-cCeEEEeeeecCCCCeeEEEE--EcCCcceEEEEEEeecCcccc---eeEEEecCCccEEEEeecccCceE---e
Q 012521 191 SCPT-LEELTIEGILHPRDNVQTINI--IVQTLKRLSISVFVMQGYVSK---RIFEIRTPNLEYLSIIANSLAYFV---L 261 (461)
Q Consensus 191 ~cp~-Le~L~L~~~~c~~~~~~~~~i--~~~sL~~L~l~~~~~~~~~~~---~~~~~~~p~L~~L~~~~~~~~~~~---~ 261 (461)
.++. |+.|+|.+ |....+....- ..++|+.|.++++...+..+. ..-....++|+.|+++++....+. +
T Consensus 616 ~l~~~L~~L~Ls~--N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~ 693 (876)
T 4ecn_A 616 AFTDQVEGLGFSH--NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693 (876)
T ss_dssp EECTTCCEEECCS--SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH
T ss_pred hccccCCEEECcC--CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH
Confidence 7888 99999988 64433321111 113488888887754321000 000123458899998877554332 2
Q ss_pred ecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCC--CCCccceEEEEecc
Q 012521 262 DEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLP--TFSNLISLELHIDS 339 (461)
Q Consensus 262 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~--~~~~L~~L~l~~~~ 339 (461)
..+++|+.+.++.+... ....... ......+..+++|+.|+|+. +.+..+ ...+. .+++|+.|+|+.+.
T Consensus 694 ~~l~~L~~L~Ls~N~L~-~ip~~~~--~~~~~~l~nl~~L~~L~Ls~--N~L~~l----p~~l~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMT-SIPENSL--KPKDGNYKNTYLLTTIDLRF--NKLTSL----SDDFRATTLPYLSNMDVSYNC 764 (876)
T ss_dssp HTTCCCSEEECCSCCCS-CCCTTSS--SCTTSCCTTGGGCCEEECCS--SCCCCC----CGGGSTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEECCCCcCC-ccChHHh--ccccccccccCCccEEECCC--CCCccc----hHHhhhccCCCcCEEEeCCCC
Confidence 46788888877665332 1100000 00000122345888888887 554422 12222 56788888887774
Q ss_pred CCChhhHHHHHhcCCCCeeEEEeec
Q 012521 340 CFGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 340 ~~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
... ++.-+.++++|+.|.|+.+
T Consensus 765 L~~---lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 765 FSS---FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CSS---CCCGGGGCTTCCEEECCCC
T ss_pred CCc---cchhhhcCCCCCEEECCCC
Confidence 422 4444567888888888774
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.65 E-value=2.5e-08 Score=106.65 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=61.6
Q ss_pred CCccEEEEeecccCc---eEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhc
Q 012521 244 PNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVL 320 (461)
Q Consensus 244 p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~ 320 (461)
++|+.|+++++.... ..+..+++|+.+.+..+..... ....+.++++|+.|+++. +.+..+ .
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----------~~~~~~~l~~L~~L~Ls~--N~l~~~---~ 330 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI----------ADEAFYGLDNLQVLNLSY--NLLGEL---Y 330 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE----------CTTTTTTCSSCCEEEEES--CCCSCC---C
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC----------ChHHhcCCCCCCEEECCC--CCCCcc---C
Confidence 678888887654332 2356788888888876543221 112356778888888887 544321 1
Q ss_pred cCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 321 NNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
...+..+++|+.|++..+..... ....+..+|+|+.|+++.+.
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAII--QDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCC--CSSCSCSCCCCCEEEEETCC
T ss_pred HHHhcCCCCCCEEECCCCCCCcc--ChhhhcCCCCCCEEECCCCC
Confidence 22344566777777766532111 11234567777777777764
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.62 E-value=4.2e-08 Score=98.95 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=22.4
Q ss_pred ccceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 395 SSCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 395 ~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
..+|+++.+.+..-.. +.-+...+.+.+.|+.+.+..+.
T Consensus 347 l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 347 LTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp CSSCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSC
T ss_pred CCCCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCc
Confidence 3567777766432221 22333456777888888877654
No 56
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.61 E-value=1.1e-08 Score=95.14 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=27.3
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+..+++|+.|+++. +.+..+. .+..+++|++|++..+..... . -+..+++|+.|++.++.
T Consensus 152 l~~l~~L~~L~L~~--N~l~~~~-----~l~~l~~L~~L~L~~N~i~~l---~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 152 LSRLTKLDTLSLED--NQISDIV-----PLAGLTKLQNLYLSKNHISDL---R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGCTTCSEEECCS--SCCCCCG-----GGTTCTTCCEEECCSSCCCBC---G-GGTTCTTCSEEEEEEEE
T ss_pred hccCCCCCEEEccC--Cccccch-----hhcCCCccCEEECCCCcCCCC---h-hhccCCCCCEEECcCCc
Confidence 34455555555555 3332211 133444555555555432121 1 14455666666665553
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.61 E-value=9.4e-09 Score=96.30 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=110.4
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
.++++|++.... ...++. +..+++|++|+|++|.+..++.+ ..+++|++|+|.+ .+.+-. . +..
T Consensus 63 ~~L~~L~L~~n~---------i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~~---~-l~~ 127 (308)
T 1h6u_A 63 NNLIGLELKDNQ---------ITDLAP-LKNLTKITELELSGNPLKNVSAI-AGLQSIKTLDLTSTQITDVT---P-LAG 127 (308)
T ss_dssp TTCCEEECCSSC---------CCCCGG-GTTCCSCCEEECCSCCCSCCGGG-TTCTTCCEEECTTSCCCCCG---G-GTT
T ss_pred CCCCEEEccCCc---------CCCChh-HccCCCCCEEEccCCcCCCchhh-cCCCCCCEEECCCCCCCCch---h-hcC
Confidence 588999554332 334454 66699999999999999887766 7899999999999 554322 2 788
Q ss_pred CCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEE
Q 012521 192 CPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAF 271 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~ 271 (461)
+|.|+.|++.+ |...++..+ -..++|+.|.+.+|..... .. ....++|+.|+++++.....
T Consensus 128 l~~L~~L~l~~--n~l~~~~~l-~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~------------ 188 (308)
T 1h6u_A 128 LSNLQVLYLDL--NQITNISPL-AGLTNLQYLSIGNAQVSDL---TP-LANLSKLTTLKADDNKISDI------------ 188 (308)
T ss_dssp CTTCCEEECCS--SCCCCCGGG-GGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCCC------------
T ss_pred CCCCCEEECCC--CccCcCccc-cCCCCccEEEccCCcCCCC---hh-hcCCCCCCEEECCCCccCcC------------
Confidence 99999999999 754444331 1238899999988754421 11 23457888888876533221
Q ss_pred EEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEecc
Q 012521 272 VLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDS 339 (461)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 339 (461)
.. +..+++|+.|+++. +.+..+. .+..+++|+.|++..+.
T Consensus 189 -----------------~~----l~~l~~L~~L~L~~--N~l~~~~-----~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 189 -----------------SP----LASLPNLIEVHLKN--NQISDVS-----PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -----------------GG----GGGCTTCCEEECTT--SCCCBCG-----GGTTCTTCCEEEEEEEE
T ss_pred -----------------hh----hcCCCCCCEEEccC--CccCccc-----cccCCCCCCEEEccCCe
Confidence 10 45667777888777 5443221 23456677777777763
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.59 E-value=2.4e-09 Score=111.80 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=21.4
Q ss_pred cceEEEEEEeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 396 SCVEVIEITNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 396 ~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
.+|+++.+.+-.-. .+-...+.+.+.|+.+.+..+.
T Consensus 536 ~~L~~L~L~~N~l~----~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 536 SHLHILNLESNGFD----EIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCC----CCCHHHcccccCcceeECCCCC
Confidence 55677666532211 1222346788899999887654
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.58 E-value=6.9e-10 Score=105.28 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=37.0
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+..+++|+.|+++. +.+..+ ....+..+++|++|++..+... .+..-+..+|+|+.|+++.+.
T Consensus 213 l~~l~~L~~L~L~~--N~l~~~---~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 213 LLRYSKLYRLGLGH--NQIRMI---ENGSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp STTCTTCSCCBCCS--SCCCCC---CTTGGGGCTTCCEEECCSSCCC---BCCTTGGGCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCC--CcCCcC---ChhHhhCCCCCCEEECCCCcCe---ecChhhhcCccCCEEECCCCC
Confidence 44566777777776 443322 1112345567777777766432 233335677888888888765
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.58 E-value=5.9e-09 Score=97.93 Aligned_cols=200 Identities=19% Similarity=0.212 Sum_probs=106.3
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeec-cCCCCccccCCccEEEeee-ecCChhHHHHHHh
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVI-DIPGSGICFPSLKILHFGF-CHPDRGLMQKFFS 190 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~ 190 (461)
..++.|++.-.+ .....+|..+..+++|++|+|+++.+. .+|..-..+++|++|+|.+ .+.+ .+...+.
T Consensus 76 ~~L~~L~L~~~n-------~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~ 146 (313)
T 1ogq_A 76 PYLNFLYIGGIN-------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--TLPPSIS 146 (313)
T ss_dssp TTCSEEEEEEET-------TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGG
T ss_pred CCCCeeeCCCCC-------cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC--cCChHHh
Confidence 477888665322 123456666667888888888888775 3343216778888888887 4331 1223356
Q ss_pred cCCccCeEEEeeeecCCCCeeEEEE-Ec-CCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCee
Q 012521 191 SCPTLEELTIEGILHPRDNVQTINI-IV-QTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLK 268 (461)
Q Consensus 191 ~cp~Le~L~L~~~~c~~~~~~~~~i-~~-~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~ 268 (461)
.+|.|++|++.+ |...+.....+ .. ++|+.|.+.++...+. ....+...+|++|+++++....
T Consensus 147 ~l~~L~~L~L~~--N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~---~~~~~~~l~L~~L~Ls~N~l~~---------- 211 (313)
T 1ogq_A 147 SLPNLVGITFDG--NRISGAIPDSYGSFSKLFTSMTISRNRLTGK---IPPTFANLNLAFVDLSRNMLEG---------- 211 (313)
T ss_dssp GCTTCCEEECCS--SCCEEECCGGGGCCCTTCCEEECCSSEEEEE---CCGGGGGCCCSEEECCSSEEEE----------
T ss_pred cCCCCCeEECcC--CcccCcCCHHHhhhhhcCcEEECcCCeeecc---CChHHhCCcccEEECcCCcccC----------
Confidence 778888888877 53211100001 11 2666666665433210 0000011125555554432110
Q ss_pred EEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHH
Q 012521 269 KAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTP 348 (461)
Q Consensus 269 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 348 (461)
.....+..+++++.|+++. +.+... ...+..+++|++|++..+... ..++.
T Consensus 212 ---------------------~~~~~~~~l~~L~~L~L~~--N~l~~~----~~~~~~l~~L~~L~Ls~N~l~--~~~p~ 262 (313)
T 1ogq_A 212 ---------------------DASVLFGSDKNTQKIHLAK--NSLAFD----LGKVGLSKNLNGLDLRNNRIY--GTLPQ 262 (313)
T ss_dssp ---------------------CCGGGCCTTSCCSEEECCS--SEECCB----GGGCCCCTTCCEEECCSSCCE--ECCCG
T ss_pred ---------------------cCCHHHhcCCCCCEEECCC--Cceeee----cCcccccCCCCEEECcCCccc--CcCCh
Confidence 0111345667777888776 544311 111334567777777766431 12334
Q ss_pred HHhcCCCCeeEEEeecc
Q 012521 349 FLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 349 ll~~~p~L~~L~l~~~~ 365 (461)
.+..+|+|+.|+++.+.
T Consensus 263 ~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp GGGGCTTCCEEECCSSE
T ss_pred HHhcCcCCCEEECcCCc
Confidence 46677888888888775
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.57 E-value=2.9e-08 Score=101.21 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=32.0
Q ss_pred ccCCcccCCCCccEEEeceeeeccCC---CCccccCCccEEEeee-ecCChhHHHHHHhcCCcc--CeEEEee
Q 012521 136 ELPQSILTCETLVELKLCSDIVIDIP---GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTL--EELTIEG 202 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~l~~~~---~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~L--e~L~L~~ 202 (461)
.+|.. .+++|++|+|++|.+..++ .+ ..+++|++|+|.+ .+. ... +..++.| +.|++.+
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~-~~~----~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFR-QLD----LLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCC-TTT----TGGGTTSCEEEEEEEE
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccc-cCc----hhhhhhceeeEEEeec
Confidence 44444 4666666666666654422 23 5566777777766 332 222 2334444 6666666
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.57 E-value=3.9e-08 Score=105.13 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=27.1
Q ss_pred CCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 144 CETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
+++|++|+|.+|.+...+ .+ .++++|++|+|.+ .+.. .....+.++|.|+.|++.+
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSC--CCSCSCSSCTTCCEEECCS
T ss_pred CCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCc--cCHHHhcCCCCCCEEECCC
Confidence 566666666655543321 23 4556666666655 2211 0111244455555555555
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.57 E-value=3.2e-09 Score=100.00 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=57.5
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCC
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQT 219 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~s 219 (461)
+..+++|++|+|++|.+...+.+ ..+++|++|+|.+ .+.+ +..+|.|+.|++.+ |...++. ....++
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~-------l~~~~~L~~L~l~~--n~l~~~~--~~~~~~ 121 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAAN--NNISRVS--CSRGQG 121 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSEEEE-------EEECTTCCEEECCS--SCCSEEE--ECCCSS
T ss_pred hhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCcccc-------ccCCCCcCEEECCC--CccCCcC--ccccCC
Confidence 34466777777776665433334 5667777777766 3321 22346666666666 4322211 112355
Q ss_pred cceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceE----eecCCCeeEEEEEE
Q 012521 220 LKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFV----LDEIPFLKKAFVLV 274 (461)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~----~~~~~~L~~~~l~~ 274 (461)
|+.|.+.++...... .......++|++|+++++...... ...+++|+.++++.
T Consensus 122 L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 122 KKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 666666555433210 011112455666666554333221 12345555554433
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.56 E-value=1.6e-09 Score=102.71 Aligned_cols=217 Identities=16% Similarity=0.150 Sum_probs=114.9
Q ss_pred cCccEEEEEEeecccccccceeccc-CCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHh
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILEL-PQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFS 190 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~ 190 (461)
.++++|++.... ...+ |..+..+++|++|+|+++.+..+|.. .+++|++|+|.+ .+.. .....+.
T Consensus 78 ~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~L~~L~l~~n~i~~--~~~~~~~ 144 (332)
T 2ft3_A 78 QHLYALVLVNNK---------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPSSLVELRIHDNRIRK--VPKGVFS 144 (332)
T ss_dssp TTCCEEECCSSC---------CCEECGGGSTTCTTCCEEECCSSCCCSCCSS--CCTTCCEEECCSSCCCC--CCSGGGS
T ss_pred CCCcEEECCCCc---------cCccCHhHhhCcCCCCEEECCCCcCCccCcc--ccccCCEEECCCCccCc--cCHhHhC
Confidence 478888543322 2233 34455588899999998887765543 238899999887 4431 1123467
Q ss_pred cCCccCeEEEeeeecCCCC--eeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce---EeecCC
Q 012521 191 SCPTLEELTIEGILHPRDN--VQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF---VLDEIP 265 (461)
Q Consensus 191 ~cp~Le~L~L~~~~c~~~~--~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~---~~~~~~ 265 (461)
.++.|+.|++.+ +.... .........+|+.|.+.++...... . ...++|++|+++++..... .+..++
T Consensus 145 ~l~~L~~L~l~~--n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~--~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 145 GLRNMNCIEMGG--NPLENSGFEPGAFDGLKLNYLRISEAKLTGIP--K---DLPETLNELHLDHNKIQAIELEDLLRYS 217 (332)
T ss_dssp SCSSCCEEECCS--CCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC--S---SSCSSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred CCccCCEEECCC--CccccCCCCcccccCCccCEEECcCCCCCccC--c---cccCCCCEEECCCCcCCccCHHHhcCCC
Confidence 788899998887 53221 1111111126777777665433210 0 0125777777776544322 245566
Q ss_pred CeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCC--h
Q 012521 266 FLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFG--W 343 (461)
Q Consensus 266 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~ 343 (461)
+|+.+.+..+.... .....+..+++|+.|+++. +.+..+ ...+..+++|+.|++..+.... .
T Consensus 218 ~L~~L~L~~N~l~~----------~~~~~~~~l~~L~~L~L~~--N~l~~l----p~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 218 KLYRLGLGHNQIRM----------IENGSLSFLPTLRELHLDN--NKLSRV----PAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp TCSCCBCCSSCCCC----------CCTTGGGGCTTCCEEECCS--SCCCBC----CTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCCEEECCCCcCCc----------CChhHhhCCCCCCEEECCC--CcCeec----ChhhhcCccCCEEECCCCCCCccCh
Confidence 66666554432211 0111245667777777776 544322 1223455667777776653211 1
Q ss_pred hhHHH--HHhcCCCCeeEEEeecc
Q 012521 344 KLLTP--FLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 344 ~~l~~--ll~~~p~L~~L~l~~~~ 365 (461)
..+.. +....++|+.|.+.++.
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hHccccccccccccccceEeecCc
Confidence 11110 01124667777777654
No 65
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.56 E-value=6e-09 Score=100.07 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=37.2
Q ss_pred hHHHHhhcCC-CceEEEEecCCChHHHhhhh-ccCCCCC-CCccceEEEEeccC--CChhhHHHHHhcCCCCeeEEEeec
Q 012521 290 DARSALELVK-RIKSMKILSLPDSMTVLSFV-LNNNLPT-FSNLISLELHIDSC--FGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 290 ~~~~~l~~~~-~l~~L~l~~~~~~~~~l~~~-~~~~~~~-~~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
.+...+..++ +|+.|+|+. +.+...... ....+.. ..+|++|+++.+.. .....+..+++.+++|+.|.++.+
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 3444555553 677777776 544321000 0111111 23666666666632 222344555566677777777666
Q ss_pred c
Q 012521 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
.
T Consensus 264 ~ 264 (362)
T 3goz_A 264 I 264 (362)
T ss_dssp H
T ss_pred C
Confidence 4
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=3e-09 Score=106.28 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=96.7
Q ss_pred cccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcC
Q 012521 140 SILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQ 218 (461)
Q Consensus 140 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~ 218 (461)
.+..+++|++|+|++|.+...+.+ ..+++|++|+|.+ .+.+ +...|.|+.|++.+ |...++.. ...+
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l-~~l~~L~~L~Ls~N~l~~-------l~~~~~L~~L~L~~--N~l~~~~~--~~l~ 120 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAAN--NNISRVSC--SRGQ 120 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEEC-TTCTTCCEEECCSSEEEE-------EEECTTCCEEECCS--SCCCCEEE--CCCS
T ss_pred HHhCCCCCCEEEeeCCCCCCCccc-ccCCCCCEEEecCCcCCC-------CCCCCCcCEEECcC--CcCCCCCc--cccC
Confidence 444577888888887776543335 6778888888877 3321 22347777777777 54333321 1236
Q ss_pred CcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceE---e-ecCCCeeEEEEEEEEceeecCCCCcchhhHHHH
Q 012521 219 TLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFV---L-DEIPFLKKAFVLVEFNVLRRNSSGIFENDARSA 294 (461)
Q Consensus 219 sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~---~-~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 294 (461)
+|+.|.+.++...+.. .......++|++|+++++...... + ..+++|+.++++.+..... . .
T Consensus 121 ~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-----------~ 186 (487)
T 3oja_A 121 GKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-----------G 186 (487)
T ss_dssp SCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-----------C
T ss_pred CCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-----------c
Confidence 6777777666543210 111123566777777665443321 1 2456666665544332110 0 0
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
...+++|+.|+|+. +.+..+ ...+..+++|+.|+++.+... .++..+..+|+|+.|++.++.
T Consensus 187 ~~~l~~L~~L~Ls~--N~l~~~----~~~~~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 187 QVVFAKLKTLDLSS--NKLAFM----GPEFQSAAGVTWISLRNNKLV---LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCCCTTCCEEECCS--SCCCEE----CGGGGGGTTCSEEECTTSCCC---EECTTCCCCTTCCEEECTTCC
T ss_pred cccCCCCCEEECCC--CCCCCC----CHhHcCCCCccEEEecCCcCc---ccchhhccCCCCCEEEcCCCC
Confidence 11345666666665 433321 111223445555555554321 122234455566666555543
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.54 E-value=1.6e-09 Score=112.17 Aligned_cols=224 Identities=13% Similarity=0.163 Sum_probs=136.0
Q ss_pred cCccEEEEEEeecccccccceecccCC--cccCCCCccEEEeceeeec-cCCCCccccCCccEEEeee-ecCChhHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQ--SILTCETLVELKLCSDIVI-DIPGSGICFPSLKILHFGF-CHPDRGLMQKF 188 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l 188 (461)
.++++|++.... ...+|. .+..+++|++|+|++|.+. .+|.+ ..+++|++|+|.+ .+. .+..-
T Consensus 305 ~~L~~L~L~~n~---------l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~-~~l~~L~~L~L~~N~l~---~lp~~ 371 (636)
T 4eco_A 305 EKIQIIYIGYNN---------LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQIT---EIPAN 371 (636)
T ss_dssp GTCCEEECCSSC---------CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCC-EEEEEESEEECCSSEEE---ECCTT
T ss_pred CCCCEEECCCCc---------CCccCchhhhccCCCCCEEeCcCCcCccchhhh-CCCCCCCEEECCCCccc---cccHh
Confidence 689999554433 337888 7788999999999999887 66766 7889999999998 443 23233
Q ss_pred HhcCCc-cCeEEEeeeecCCCCeeEEEEE---cCCcceEEEEEEeecCcccc-----eeEEEecCCccEEEEeecccCce
Q 012521 189 FSSCPT-LEELTIEGILHPRDNVQTINII---VQTLKRLSISVFVMQGYVSK-----RIFEIRTPNLEYLSIIANSLAYF 259 (461)
Q Consensus 189 ~~~cp~-Le~L~L~~~~c~~~~~~~~~i~---~~sL~~L~l~~~~~~~~~~~-----~~~~~~~p~L~~L~~~~~~~~~~ 259 (461)
+..++. |+.|++.+ |....+.. .+. .++|+.|.+.++...+..+. .......++|++|+++++....+
T Consensus 372 l~~l~~~L~~L~Ls~--N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 372 FCGFTEQVENLSFAH--NKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp SEEECTTCCEEECCS--SCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred hhhhcccCcEEEccC--CcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence 677888 99999998 65443322 111 13788888887764421000 00112456888998887655433
Q ss_pred E---eecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCC--CCCccceEE
Q 012521 260 V---LDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLP--TFSNLISLE 334 (461)
Q Consensus 260 ~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~--~~~~L~~L~ 334 (461)
. +..+++|+.+.+..+... ....... ......+..+++|+.|+++. +.+..+ ...+. .+++|++|+
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~--~~~~~~~~~l~~L~~L~Ls~--N~l~~l----p~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLT-EIPKNSL--KDENENFKNTYLLTSIDLRF--NKLTKL----SDDFRATTLPYLVGID 519 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCS-BCCSSSS--EETTEECTTGGGCCEEECCS--SCCCBC----CGGGSTTTCTTCCEEE
T ss_pred CHHHHccCCCCCEEECCCCCCC-CcCHHHh--ccccccccccCCccEEECcC--CcCCcc----ChhhhhccCCCcCEEE
Confidence 2 335788888777654332 1110000 00000012234788888887 554422 11222 566788888
Q ss_pred EEeccCCChhhHHHHHhcCCCCeeEEEeec
Q 012521 335 LHIDSCFGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 335 l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
++.+.... ++.-+..+++|+.|+++++
T Consensus 520 Ls~N~l~~---ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 520 LSYNSFSK---FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CCSSCCSS---CCCGGGGCSSCCEEECCSC
T ss_pred CCCCCCCC---cChhhhcCCCCCEEECCCC
Confidence 77764322 4444567888888888654
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.50 E-value=1.7e-08 Score=92.67 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=55.6
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-EcCCcc
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IVQTLK 221 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~~sL~ 221 (461)
.++|++|.+.++.+..++.+ ..+++|++|+|.+ .+.+.. .+..++.|++|++.+ |...++..-.+ ..++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l-~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGI-QYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTG--NQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTG-GGCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTT--SCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCccccccc-ccCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCC--CccCccChhHhcCCcCCC
Confidence 45566666666655554444 5566666666665 333211 245566666666665 43222111000 124455
Q ss_pred eEEEEEEeecCcccceeEEEecCCccEEEEeecccCceE---eecCCCeeEEEEEE
Q 012521 222 RLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFV---LDEIPFLKKAFVLV 274 (461)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~l~~ 274 (461)
.|.+.++..... .....-..++|++|+++++...... +..+++|+.+.+..
T Consensus 113 ~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 113 ELVLVENQLQSL--PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp EEECTTSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCcc--CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 555544432210 0000113467777777765433221 23344555444433
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.48 E-value=9.3e-08 Score=97.91 Aligned_cols=128 Identities=18% Similarity=0.093 Sum_probs=68.0
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
.+++.|++..+. ...+|. .+++|++|+|++|.+..+|. .+++|++|+|.+ .+..- -..
T Consensus 61 ~~L~~L~L~~N~---------l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l------~~~ 119 (622)
T 3g06_A 61 AHITTLVIPDNN---------LTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHL------PAL 119 (622)
T ss_dssp TTCSEEEECSCC---------CSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCC------CCC
T ss_pred CCCcEEEecCCC---------CCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCC------CCC
Confidence 467777554332 234554 35778888888777766554 467788888876 33211 114
Q ss_pred CCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEE
Q 012521 192 CPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAF 271 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~ 271 (461)
++.|+.|++.+ |....+.. ..++|+.|.+++|.... +....++|+.|.++++....+. ..+++|+.+.
T Consensus 120 l~~L~~L~L~~--N~l~~lp~---~l~~L~~L~Ls~N~l~~------l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~ 187 (622)
T 3g06_A 120 PSGLCKLWIFG--NQLTSLPV---LPPGLQELSVSDNQLAS------LPALPSELCKLWAYNNQLTSLP-MLPSGLQELS 187 (622)
T ss_dssp CTTCCEEECCS--SCCSCCCC---CCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEE
T ss_pred CCCcCEEECCC--CCCCcCCC---CCCCCCEEECcCCcCCC------cCCccCCCCEEECCCCCCCCCc-ccCCCCcEEE
Confidence 56777777766 53332221 23667777666654321 1112345555555554333322 3344555444
Q ss_pred EE
Q 012521 272 VL 273 (461)
Q Consensus 272 l~ 273 (461)
++
T Consensus 188 Ls 189 (622)
T 3g06_A 188 VS 189 (622)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.47 E-value=6e-07 Score=91.40 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=53.3
Q ss_pred cCccEEEEEEeecccccccceecccC-CcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHh
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELP-QSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFS 190 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~ 190 (461)
.++++|++.... ...++ ..+..+++|++|+|+++.+..+|.. .+++|++|+|.+ .+. .-.+...+.
T Consensus 76 ~~L~~L~Ls~N~---------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~ 143 (562)
T 3a79_B 76 SELRVLRLSHNR---------IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFD-VLPVCKEFG 143 (562)
T ss_dssp TTCCEEECCSCC---------CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCS-BCCCCGGGG
T ss_pred CCccEEECCCCC---------CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCcc-ccCchHhhc
Confidence 477888554332 23443 3445588999999998888766654 689999999988 443 212223477
Q ss_pred cCCccCeEEEee
Q 012521 191 SCPTLEELTIEG 202 (461)
Q Consensus 191 ~cp~Le~L~L~~ 202 (461)
+++.|+.|++.+
T Consensus 144 ~l~~L~~L~L~~ 155 (562)
T 3a79_B 144 NLTKLTFLGLSA 155 (562)
T ss_dssp GCTTCCEEEEEC
T ss_pred ccCcccEEecCC
Confidence 889999999988
No 71
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.47 E-value=1.8e-08 Score=102.92 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=26.2
Q ss_pred cCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 142 LTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 142 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
..+++|++|+|++|.+..++.+ ..+++|+.|+|.+ .+.+.. -+..++.|+.|+|.+
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~l-~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKPL-TNLKNLGWLFLDENKIKDLS----SLKDLKKLKSLSLEH 118 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGGG-GGCTTCCEEECCSSCCCCCT----TSTTCTTCCEEECTT
T ss_pred ccCCCCCEEEeeCCCCCCChhh-ccCCCCCEEECcCCCCCCCh----hhccCCCCCEEEecC
Confidence 3355555555555554443333 4455555555555 322111 134455555555554
No 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.47 E-value=1.4e-07 Score=82.12 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=86.7
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcce
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLKR 222 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~ 222 (461)
+++|++|+++++.+..++.+ ..+++|++|++.+ ...... .+..+|.|+.|++.+ |...+...
T Consensus 43 l~~L~~L~l~~n~i~~l~~l-~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~--n~l~~~~~---------- 105 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGI-EYAHNIKDLTINNIHATNYN----PISGLSNLERLRIMG--KDVTSDKI---------- 105 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTG-GGCTTCSEEEEESCCCSCCG----GGTTCTTCCEEEEEC--TTCBGGGS----------
T ss_pred cCCccEEeccCCCccChHHH-hcCCCCCEEEccCCCCCcch----hhhcCCCCCEEEeEC--CccCcccC----------
Confidence 66788888888877766655 7788888888887 332221 366688888888887 53221000
Q ss_pred EEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCce
Q 012521 223 LSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIK 302 (461)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 302 (461)
. ..-..|+|++|+++++... ......+..+++|+
T Consensus 106 --------------~-~l~~l~~L~~L~Ls~n~i~-------------------------------~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 106 --------------P-NLSGLTSLTLLDISHSAHD-------------------------------DSILTKINTLPKVN 139 (197)
T ss_dssp --------------C-CCTTCTTCCEEECCSSBCB-------------------------------GGGHHHHTTCSSCC
T ss_pred --------------h-hhcCCCCCCEEEecCCccC-------------------------------cHhHHHHhhCCCCC
Confidence 0 0012355666655544221 11123355677788
Q ss_pred EEEEecCCCh-HHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 303 SMKILSLPDS-MTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 303 ~L~l~~~~~~-~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.|+++. +. +..+ ..+..+++|++|++..+...... .+..+|+|+.|++.++.
T Consensus 140 ~L~L~~--n~~i~~~-----~~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSY--NGAITDI-----MPLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCS--CTBCCCC-----GGGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC-
T ss_pred EEEccC--CCCcccc-----HhhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcc
Confidence 888776 43 3222 12345667777777666432221 45678899999888865
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.46 E-value=1.2e-08 Score=101.10 Aligned_cols=191 Identities=18% Similarity=0.218 Sum_probs=127.1
Q ss_pred cCccEEEEEEeecccccccceecccCC-cccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQ-SILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKF 188 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l 188 (461)
.++++|++.... ...++. .+..+++|++|+|++|.+..++. + ..+++|++|+|.+ .+. ..-...
T Consensus 99 ~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~~~~~~ 166 (452)
T 3zyi_A 99 HHLEVLQLGRNS---------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF-EYLSKLRELWLRNNPIE--SIPSYA 166 (452)
T ss_dssp TTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS-SSCTTCCEEECCSCCCC--EECTTT
T ss_pred CCCCEEECCCCc---------cCCcChhhccCcccCCEEECCCCcCCccChhhh-cccCCCCEEECCCCCcc--eeCHhH
Confidence 478888554332 234443 34458999999999998876553 4 6789999999998 443 111234
Q ss_pred HhcCCccCeEEEeeeecCCCCeeEEEE----EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce---Ee
Q 012521 189 FSSCPTLEELTIEGILHPRDNVQTINI----IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF---VL 261 (461)
Q Consensus 189 ~~~cp~Le~L~L~~~~c~~~~~~~~~i----~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~---~~ 261 (461)
+..+|.|+.|++.+ | ..+..+.. ..++|+.|.+.++..... ......++|++|+++++..... .+
T Consensus 167 ~~~l~~L~~L~l~~--~--~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 167 FNRVPSLMRLDLGE--L--KKLEYISEGAFEGLFNLKYLNLGMCNIKDM----PNLTPLVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp TTTCTTCCEEECCC--C--TTCCEECTTTTTTCTTCCEEECTTSCCSSC----CCCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred HhcCCcccEEeCCC--C--CCccccChhhccCCCCCCEEECCCCccccc----ccccccccccEEECcCCcCcccCcccc
Confidence 67899999999998 4 34444432 237899999988765421 1123457899999988765433 35
Q ss_pred ecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEec
Q 012521 262 DEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHID 338 (461)
Q Consensus 262 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 338 (461)
.++++|+.+.+..+.... .....+.++++|+.|+|+. +.+..+ ....+..+++|+.|+|..+
T Consensus 239 ~~l~~L~~L~L~~n~l~~----------~~~~~~~~l~~L~~L~L~~--N~l~~~---~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSL----------IERNAFDGLASLVELNLAH--NNLSSL---PHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTCTTCCEEECTTSCCCE----------ECTTTTTTCTTCCEEECCS--SCCSCC---CTTSSTTCTTCCEEECCSS
T ss_pred cCccCCCEEEeCCCcCce----------ECHHHhcCCCCCCEEECCC--CcCCcc---ChHHhccccCCCEEEccCC
Confidence 678899988776543221 1112356789999999998 655422 2233456778999998876
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.46 E-value=2.7e-08 Score=91.23 Aligned_cols=183 Identities=16% Similarity=0.180 Sum_probs=91.6
Q ss_pred ccCCcccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE
Q 012521 136 ELPQSILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT 212 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~ 212 (461)
.+|..+. ++|++|+|+++.+..++. + ..+++|++|+|.+ .+.. .-..++..++.|++|++.+ +....+..
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~--n~l~~~~~ 102 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTD--NKLQALPI 102 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSS-SSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCS--SCCCCCCT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHh-cCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCC--CcCCcCCH
Confidence 4454332 568888888777765442 4 5678888888877 3321 1123356678888888877 53222211
Q ss_pred EE-EEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhH
Q 012521 213 IN-IIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDA 291 (461)
Q Consensus 213 ~~-i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~ 291 (461)
-. -..++|+.|.+.++...... .......++|++|+++++......
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~------------------------------- 149 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNELQSLP------------------------------- 149 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCC-------------------------------
T ss_pred hHcccccCCCEEECCCCccCeeC--HHHhCcCcCCCEEECCCCcCCccC-------------------------------
Confidence 00 01245555555544322100 000112355555555544222111
Q ss_pred HHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 292 RSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 292 ~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
...+..+++|+.|+++. +.+..+ ....+..+.+|++|++..+..... ....+..+++|+.|.++++.
T Consensus 150 ~~~~~~l~~L~~L~L~~--n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYN--NQLKRV---PEGAFDKLTELKTLKLDNNQLKRV--PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCS--SCCSCC---CTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCcccceeEecC--CcCcEe---ChhHhccCCCcCEEECCCCcCCcC--CHHHhccccCCCEEEecCCC
Confidence 01234566777777766 433321 112234456667666666532111 11234566777777777665
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.45 E-value=1.5e-08 Score=99.91 Aligned_cols=191 Identities=17% Similarity=0.233 Sum_probs=124.9
Q ss_pred cCccEEEEEEeecccccccceecccCCc-ccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQS-ILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKF 188 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l 188 (461)
.++++|+|.... ...++.. +..+++|++|+|++|.+..++. + ..+++|++|+|.+ .+. ..-...
T Consensus 88 ~~L~~L~Ls~n~---------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~i~--~~~~~~ 155 (440)
T 3zyj_A 88 RHLEILQLSRNH---------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF-VYLSKLKELWLRNNPIE--SIPSYA 155 (440)
T ss_dssp SSCCEEECCSSC---------CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS-CSCSSCCEEECCSCCCC--EECTTT
T ss_pred CCCCEEECCCCc---------CCccChhhccCCccCCEEECCCCcCCeeCHhHh-hccccCceeeCCCCccc--ccCHHH
Confidence 478888554332 2334433 3448999999999998876553 4 6789999999998 443 111234
Q ss_pred HhcCCccCeEEEeeeecCCCCeeEEEE----EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce---Ee
Q 012521 189 FSSCPTLEELTIEGILHPRDNVQTINI----IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF---VL 261 (461)
Q Consensus 189 ~~~cp~Le~L~L~~~~c~~~~~~~~~i----~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~---~~ 261 (461)
+..+|.|+.|++.+ | ..+..+.. ..++|+.|.+.++..... . .....++|++|+++++..... .+
T Consensus 156 ~~~l~~L~~L~l~~--~--~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 156 FNRIPSLRRLDLGE--L--KRLSYISEGAFEGLSNLRYLNLAMCNLREI---P-NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp TTTCTTCCEEECCC--C--TTCCEECTTTTTTCSSCCEEECTTSCCSSC---C-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred hhhCcccCEeCCCC--C--CCcceeCcchhhcccccCeecCCCCcCccc---c-ccCCCcccCEEECCCCccCccChhhh
Confidence 67899999999988 4 33433322 237899999987754421 1 123457899999988755433 35
Q ss_pred ecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEec
Q 012521 262 DEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHID 338 (461)
Q Consensus 262 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 338 (461)
.++++|+.+.+..+.... .....+..+++|+.|+|+. +.+..+ ....+..+++|+.|+|..+
T Consensus 228 ~~l~~L~~L~L~~n~l~~----------~~~~~~~~l~~L~~L~L~~--N~l~~~---~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQV----------IERNAFDNLQSLVEINLAH--NNLTLL---PHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTCTTCCEEECTTCCCCE----------ECTTSSTTCTTCCEEECTT--SCCCCC---CTTTTSSCTTCCEEECCSS
T ss_pred ccCccCCEEECCCCceeE----------EChhhhcCCCCCCEEECCC--CCCCcc---ChhHhccccCCCEEEcCCC
Confidence 678888888776543321 1112356789999999998 655432 2233456778999998876
No 76
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=6.4e-08 Score=92.31 Aligned_cols=169 Identities=16% Similarity=0.133 Sum_probs=89.2
Q ss_pred cccCCccEEEeee-ec-------CChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccc
Q 012521 165 ICFPSLKILHFGF-CH-------PDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSK 236 (461)
Q Consensus 165 ~~~~~L~~L~L~~-~~-------~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~ 236 (461)
..+++|+.|.+.. .. .+..++..++..+|.|++|.|.+ |....+.. +..++|++|.+..|.... +..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g--~~~l~l~~--~~~~~L~~L~L~~~~l~~-~~l 210 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG--TNNLSIGK--KPRPNLKSLEIISGGLPD-SVV 210 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC--CBTCBCCS--CBCTTCSEEEEECSBCCH-HHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC--CCCceecc--ccCCCCcEEEEecCCCCh-HHH
Confidence 3466777777754 22 11234678899999999999998 42112222 346788888887554221 011
Q ss_pred eeEE-EecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHh--hcCCCceEEEEecCCChH
Q 012521 237 RIFE-IRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSAL--ELVKRIKSMKILSLPDSM 313 (461)
Q Consensus 237 ~~~~-~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l--~~~~~l~~L~l~~~~~~~ 313 (461)
..+. ...|+|++|+++...... +.-..+ ..+..++ ..+|+|+.|.|.. +.+
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~---~~~~~~---------------------~~l~~~l~~~~~p~Lr~L~L~~--~~i 264 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDY---GFDGDM---------------------NVFRPLFSKDRFPNLKWLGIVD--AEE 264 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGG---TCCSCG---------------------GGTGGGSCTTTCTTCCEEEEES--CTT
T ss_pred HHHHHccCCCCcEEEEecccccc---ccchhH---------------------HHHHHHHhcCCCCCcCEEeCCC--CCC
Confidence 1111 145777777764210000 000000 0111112 2467888888876 433
Q ss_pred HHhhhhccCCCCCCCccceEEEEeccCCChhh---HHHHHhcCCCCeeEEEeecc
Q 012521 314 TVLSFVLNNNLPTFSNLISLELHIDSCFGWKL---LTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 314 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---l~~ll~~~p~L~~L~l~~~~ 365 (461)
...........|.+++|++|+|+.+.. ...+ +..-++++|+|+.|+|+.+.
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L-~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCC-BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCC-ChHHHHHHHhhcccCCcceEEECCCCc
Confidence 321111112235677888888866543 3333 33334667888888887664
No 77
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.41 E-value=6.2e-09 Score=97.43 Aligned_cols=193 Identities=17% Similarity=0.115 Sum_probs=125.5
Q ss_pred cEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE---EcCCcceE
Q 012521 148 VELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI---IVQTLKRL 223 (461)
Q Consensus 148 ~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i---~~~sL~~L 223 (461)
+.++..+..+..+|.. -.++|++|+|.+ .+.. .-..++..++.|+.|++.+ +.......... ..++|+.|
T Consensus 10 ~~l~c~~~~l~~ip~~--~~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG--IPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSS--NGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCSSCCSC--CCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCS--SCCCEEEEEEHHHHSCSCCCEE
T ss_pred CEEEcCCCCcccCCCC--CCCCCCEEECCCCccCc--cCHhHhhccccCCEEECCC--CccCcccCcccccccccccCEE
Confidence 4677777777666642 347999999998 4431 1123467899999999998 64332221111 24899999
Q ss_pred EEEEEeecCcccceeEEEecCCccEEEEeecccCce----EeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCC
Q 012521 224 SISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF----VLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVK 299 (461)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (461)
.+.++.... ........++|++|+++++..... .+..+++|+.+.+..+.... .....+..++
T Consensus 84 ~Ls~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~l~ 150 (306)
T 2z66_A 84 DLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV----------AFNGIFNGLS 150 (306)
T ss_dssp ECCSCSEEE---EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE----------CSTTTTTTCT
T ss_pred ECCCCcccc---ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc----------cchhhcccCc
Confidence 998875431 122344679999999987643321 35677888888766543221 1122356788
Q ss_pred CceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 300 RIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 300 ~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+++.|+++. +.+.. ......+..+++|++|++..+.... .....+..+|+|+.|+++++.
T Consensus 151 ~L~~L~l~~--n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 151 SLEVLKMAG--NSFQE--NFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TCCEEECTT--CEEGG--GEECSCCTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTSC
T ss_pred CCCEEECCC--Ccccc--ccchhHHhhCcCCCEEECCCCCcCC--cCHHHhcCCCCCCEEECCCCc
Confidence 999999998 65432 0123445667889999888774311 123456788999999999876
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.40 E-value=4.5e-08 Score=91.86 Aligned_cols=60 Identities=25% Similarity=0.228 Sum_probs=39.0
Q ss_pred CCCCccEEEeceeeecc-CCCCc--cccCCccEEEeee-ecCCh-hHHHHHHh-cCCccCeEEEee
Q 012521 143 TCETLVELKLCSDIVID-IPGSG--ICFPSLKILHFGF-CHPDR-GLMQKFFS-SCPTLEELTIEG 202 (461)
Q Consensus 143 ~~~~L~~L~L~~~~l~~-~~~~~--~~~~~L~~L~L~~-~~~~~-~~l~~l~~-~cp~Le~L~L~~ 202 (461)
.+++|++|+|++|.+.. .|... ..+++|++|+|.+ .+.+. ..+..+.. .++.|++|++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC
Confidence 47789999999888753 33321 5678899999988 44322 23333221 138888888888
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.39 E-value=1.5e-08 Score=94.06 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=30.0
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+..+++|+.|+++. +.+..+ ....+..+.+|++|++..+... .+..-+...++|+.|.+.++.
T Consensus 144 ~~~l~~L~~L~L~~--N~l~~l---~~~~~~~l~~L~~L~L~~N~l~---~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 144 LTPTPKLEKLSLAN--NNLTEL---PAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCTTCCEEECTT--SCCSCC---CTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCCCSEEECCSCC
T ss_pred cccccCCCEEECCC--CcCCcc---CHHHhcCcCCCCEEECCCCcCC---ccChhhcccccCCeEEeCCCC
Confidence 34556666666665 443321 1112234455666666555321 122223344566666666554
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.39 E-value=9.7e-09 Score=94.38 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=109.5
Q ss_pred cccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-Ec
Q 012521 140 SILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IV 217 (461)
Q Consensus 140 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~ 217 (461)
.+..+++|++|+|++|.+..++.+ ..+++|++|+|.+ .+. +.....+..++.|++|++.+ |...++..-.+ ..
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l 132 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISAL-KELTNLTYLILTGNQLQ--SLPNGVFDKLTNLKELVLVE--NQLQSLPDGVFDKL 132 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGG-TTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTT--SCCCCCCTTTTTTC
T ss_pred ccccCCCCcEEECCCCCCCCchhh-cCCCCCCEEECCCCccC--ccChhHhcCCcCCCEEECCC--CcCCccCHHHhccC
Confidence 355688999999998888776655 7789999999988 443 11223467789999999988 64333321111 23
Q ss_pred CCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhc
Q 012521 218 QTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALEL 297 (461)
Q Consensus 218 ~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (461)
++|+.|.+.+|...... ....-..++|++|+++++...... ...+..
T Consensus 133 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~-------------------------------~~~~~~ 179 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQLQSLP-------------------------------EGVFDK 179 (272)
T ss_dssp TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCC-------------------------------TTTTTT
T ss_pred CCCCEEECCCCccCccC--HHHhccCccCCEEECCCCCcCccC-------------------------------HHHhcC
Confidence 78999998877543210 111124689999999887443211 012456
Q ss_pred CCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 298 VKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 298 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+++|+.|+++. +.+..+ ....+..+++|+.|++..+.. ...||+|+.|.+..+.
T Consensus 180 l~~L~~L~L~~--N~l~~~---~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 180 LTQLKDLRLYQ--NQLKSV---PDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWINK 233 (272)
T ss_dssp CTTCCEEECCS--SCCSCC---CTTTTTTCTTCCEEECCSSCB---------CCCTTTTHHHHHHHHH
T ss_pred CccCCEEECCC--CcCCcc---CHHHHhCCcCCCEEEccCCCc---------cccCcHHHHHHHHHHh
Confidence 77888888887 554322 122345567788888776632 1347777777766654
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.38 E-value=6.4e-08 Score=89.02 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=54.8
Q ss_pred cCCccEEEEeecccCc----eEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCce-EEEEecCCChHHHhh
Q 012521 243 TPNLEYLSIIANSLAY----FVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIK-SMKILSLPDSMTVLS 317 (461)
Q Consensus 243 ~p~L~~L~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~L~l~~~~~~~~~l~ 317 (461)
.++|++|+++++.... ..+.++++|+.+++..+..... .+ ..+. -+..++.+. .|+++. +.+..+.
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~-----~~~~-~l~~L~~l~l~L~ls~--n~l~~~~ 193 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YC-----TDLR-VLHQMPLLNLSLDLSL--NPMNFIQ 193 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CG-----GGGH-HHHTCTTCCEEEECCS--SCCCEEC
T ss_pred CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CH-----HHhh-hhhhccccceeeecCC--CcccccC
Confidence 3556666665543322 1234556666665544322110 00 1111 123333333 777777 5544321
Q ss_pred hhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 318 FVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.......+|++|++..+..... ...++..+++|+.|+++++.
T Consensus 194 ----~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 194 ----PGAFKEIRLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ----TTSSCSCCEEEEECCSSCCSCC--CTTTTTTCCSCCEEECCSSC
T ss_pred ----ccccCCCcccEEECCCCceeec--CHhHhcccccccEEEccCCc
Confidence 1111223788888887753221 22356788999999999876
No 82
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.37 E-value=8.9e-09 Score=95.31 Aligned_cols=183 Identities=15% Similarity=0.142 Sum_probs=106.7
Q ss_pred ccCCc-ccCCCCccEEEeceeeeccC-C-CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCee
Q 012521 136 ELPQS-ILTCETLVELKLCSDIVIDI-P-GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQ 211 (461)
Q Consensus 136 ~lp~~-l~~~~~L~~L~L~~~~l~~~-~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~ 211 (461)
.++.. +..+++|++|+|+++.+..+ + .+ ..+++|++|+|.+ .....- ....+..++.|++|++.+ |...++.
T Consensus 46 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~--n~l~~~~ 121 (285)
T 1ozn_A 46 HVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDR--CGLQELG 121 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTT--SCCCCCC
T ss_pred ccCHHHcccCCCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCC--CcCCEEC
Confidence 34433 34478888888887766543 2 33 5678888888877 322111 122356778888888877 5433221
Q ss_pred EEEE-EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceE---eecCCCeeEEEEEEEEceeecCCCCcc
Q 012521 212 TINI-IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFV---LDEIPFLKKAFVLVEFNVLRRNSSGIF 287 (461)
Q Consensus 212 ~~~i-~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~ 287 (461)
.-.+ ..++|+.|.+.++...... ....-..++|++|+++++...... +..+++|+.+.+..+....
T Consensus 122 ~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------- 191 (285)
T 1ozn_A 122 PGLFRGLAALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-------- 191 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--------
T ss_pred HhHhhCCcCCCEEECCCCcccccC--HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc--------
Confidence 1111 2367888888766433110 001123578888888876544332 4567888887776543321
Q ss_pred hhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEecc
Q 012521 288 ENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDS 339 (461)
Q Consensus 288 ~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 339 (461)
.....+..+++|+.|+++. +.+..+. ...+..+++|+.|++..+.
T Consensus 192 --~~~~~~~~l~~L~~L~l~~--n~l~~~~---~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 192 --VHPHAFRDLGRLMTLYLFA--NNLSALP---TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp --ECTTTTTTCTTCCEEECCS--SCCSCCC---HHHHTTCTTCCEEECCSSC
T ss_pred --cCHhHccCcccccEeeCCC--CcCCcCC---HHHcccCcccCEEeccCCC
Confidence 1112356788999999998 6554321 1123456788989988773
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=1.4e-07 Score=86.18 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=55.5
Q ss_pred CCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcc
Q 012521 143 TCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLK 221 (461)
Q Consensus 143 ~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~ 221 (461)
.+++|++|++.+|.+..++.+ ..+++|++|+|.+ .+.+... +..++.|+.|++.+ |...++..+.. ++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l-~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~--N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGM-QFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNR--NRLKNLNGIPS--ACLS 109 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTG-GGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCS--SCCSCCTTCCC--SSCC
T ss_pred hcCcCcEEECcCCCcccchHH-hhCCCCCEEECCCCccCCChh----hccCCCCCEEECCC--CccCCcCcccc--Cccc
Confidence 478899999999988877766 7889999999998 5543322 77899999999998 65444322111 5566
Q ss_pred eEEEEEEe
Q 012521 222 RLSISVFV 229 (461)
Q Consensus 222 ~L~l~~~~ 229 (461)
.|.+.++.
T Consensus 110 ~L~L~~N~ 117 (263)
T 1xeu_A 110 RLFLDNNE 117 (263)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 66655543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.33 E-value=1.9e-07 Score=83.90 Aligned_cols=172 Identities=14% Similarity=0.137 Sum_probs=91.8
Q ss_pred CCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEE----EEc
Q 012521 145 ETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTIN----IIV 217 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~----i~~ 217 (461)
++|++|+|.++.+..++. + ..+++|++|+|.+ ...+. .-...+.+++.|+.|++.+ | ..+..+. ...
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~--~--n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRN--T--RNLTYIDPDALKEL 104 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEE--E--TTCCEECTTSEECC
T ss_pred CcccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCC--C--CCeeEcCHHHhCCC
Confidence 478888888887765543 4 5788888888887 32211 1112356788888888876 3 2232221 123
Q ss_pred CCcceEEEEEEeecCcccceeEEEecCCcc---EEEEeec-ccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHH
Q 012521 218 QTLKRLSISVFVMQGYVSKRIFEIRTPNLE---YLSIIAN-SLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARS 293 (461)
Q Consensus 218 ~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~---~L~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 293 (461)
++|+.|.+.++..... .. ....++|+ +|+++++ ..... ...
T Consensus 105 ~~L~~L~l~~n~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i-------------------------------~~~ 149 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMF---PD-LTKVYSTDIFFILEITDNPYMTSI-------------------------------PVN 149 (239)
T ss_dssp TTCCEEEEEEECCCSC---CC-CTTCCBCCSEEEEEEESCTTCCEE-------------------------------CTT
T ss_pred CCCCEEeCCCCCCccc---cc-cccccccccccEEECCCCcchhhc-------------------------------Ccc
Confidence 5666676666543211 00 11223333 4444433 11111 001
Q ss_pred HhhcCCCce-EEEEecCCChHHHhhhhccCCCCCCCccceEEEEecc-CCChhhHHHHHhcC-CCCeeEEEeecc
Q 012521 294 ALELVKRIK-SMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDS-CFGWKLLTPFLKRS-PSLKVLNLDFSK 365 (461)
Q Consensus 294 ~l~~~~~l~-~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~l~~ll~~~-p~L~~L~l~~~~ 365 (461)
.+.++++++ .|+++. +.+..+.. ..+.. .+|++|++..+. ... .-...+..+ ++|+.|+++.+.
T Consensus 150 ~~~~l~~L~~~L~l~~--n~l~~i~~---~~~~~-~~L~~L~L~~n~~l~~--i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYN--NGFTSVQG---YAFNG-TKLDAVYLNKNKYLTV--IDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TTTTTBSSEEEEECCS--CCCCEECT---TTTTT-CEEEEEECTTCTTCCE--ECTTTTTTCSBCCSEEECTTCC
T ss_pred cccchhcceeEEEcCC--CCCcccCH---hhcCC-CCCCEEEcCCCCCccc--CCHHHhhccccCCcEEECCCCc
Confidence 245677888 888876 54432211 11122 467777776652 211 112345667 888888888764
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.30 E-value=3.4e-07 Score=84.89 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=80.3
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCC
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQT 219 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~s 219 (461)
+..+++|++|+|++|.+..++.+ ..+++|++|+|.+ .+.+.. . +..++.|+.|++.+ |...++..+ ...++
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l-~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~L~~--n~i~~~~~l-~~l~~ 135 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLS---S-LKDLKKLKSLSLEH--NGISDINGL-VHLPQ 135 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCCCCGG---G-GTTCTTCCEEECTT--SCCCCCGGG-GGCTT
T ss_pred HhcCCCCCEEEccCCccCCCccc-ccCCCCCEEECCCCcCCCCh---h-hccCCCCCEEECCC--CcCCCChhh-cCCCC
Confidence 44467777777777766554444 6677777777776 443221 1 56677777777776 533322110 01244
Q ss_pred cceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCC
Q 012521 220 LKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVK 299 (461)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (461)
|+.|.+.++..... ..+..+++|+.+.++.+.... +.. +..++
T Consensus 136 L~~L~l~~n~l~~~-------------------------~~l~~l~~L~~L~L~~N~l~~-----------~~~-l~~l~ 178 (291)
T 1h6t_A 136 LESLYLGNNKITDI-------------------------TVLSRLTKLDTLSLEDNQISD-----------IVP-LAGLT 178 (291)
T ss_dssp CCEEECCSSCCCCC-------------------------GGGGGCTTCSEEECCSSCCCC-----------CGG-GTTCT
T ss_pred CCEEEccCCcCCcc-------------------------hhhccCCCCCEEEccCCcccc-----------chh-hcCCC
Confidence 55555544332210 112344555555444332111 111 66778
Q ss_pred CceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEecc
Q 012521 300 RIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDS 339 (461)
Q Consensus 300 ~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 339 (461)
+|+.|+++. +.+..+ ..+..+++|+.|++..+.
T Consensus 179 ~L~~L~L~~--N~i~~l-----~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 179 KLQNLYLSK--NHISDL-----RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TCCEEECCS--SCCCBC-----GGGTTCTTCSEEEEEEEE
T ss_pred ccCEEECCC--CcCCCC-----hhhccCCCCCEEECcCCc
Confidence 888999887 655433 124567788888888874
No 86
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.27 E-value=2.2e-08 Score=93.95 Aligned_cols=223 Identities=15% Similarity=0.152 Sum_probs=126.8
Q ss_pred CCeeEEEEEE-cccCcCCcccHHHHHHHHHhcCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeec-cC
Q 012521 83 KDIHNFHLRS-STLREKDFSRVSEWICFAIQRNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVI-DI 160 (461)
Q Consensus 83 ~~i~~l~l~~-~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~ 160 (461)
+.++.+.+.. ....+.....+. .-.++++|++.... ....+|..+..+++|++|+|++|.+. .+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~------~l~~L~~L~Ls~n~--------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 141 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIA------KLTQLHYLYITHTN--------VSGAIPDFLSQIKTLVTLDFSYNALSGTL 141 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGG------GCTTCSEEEEEEEC--------CEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred CCCCeeeCCCCCcccccCChhHh------cCCCCCEEECcCCe--------eCCcCCHHHhCCCCCCEEeCCCCccCCcC
Confidence 4688888883 331111122221 23589999776654 23366777777999999999999886 34
Q ss_pred CCCccccCCccEEEeee-ecCChhHHHHHHhcCC-ccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCccccee
Q 012521 161 PGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCP-TLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRI 238 (461)
Q Consensus 161 ~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp-~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~ 238 (461)
|..-..+++|++|+|.+ .+. . .+..-+..++ .|+.|++.+ +...+...-.+...+|+.|.+.++..... ...
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~-~-~~p~~l~~l~~~L~~L~L~~--N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~--~~~ 215 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRIS-G-AIPDSYGSFSKLFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGD--ASV 215 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCE-E-ECCGGGGCCCTTCCEEECCS--SEEEEECCGGGGGCCCSEEECCSSEEEEC--CGG
T ss_pred ChHHhcCCCCCeEECcCCccc-C-cCCHHHhhhhhcCcEEECcC--CeeeccCChHHhCCcccEEECcCCcccCc--CCH
Confidence 43227899999999998 432 1 1222356676 999999998 53111111011223499999987654311 011
Q ss_pred EEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhh
Q 012521 239 FEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSF 318 (461)
Q Consensus 239 ~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~ 318 (461)
..-..++|++|+++++..... .. .+..+++|+.|+++. +.+..
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~-------------------------------~~-~~~~l~~L~~L~Ls~--N~l~~--- 258 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFD-------------------------------LG-KVGLSKNLNGLDLRN--NRIYG--- 258 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCB-------------------------------GG-GCCCCTTCCEEECCS--SCCEE---
T ss_pred HHhcCCCCCEEECCCCceeee-------------------------------cC-cccccCCCCEEECcC--CcccC---
Confidence 112356777777766532210 00 033456777777776 44321
Q ss_pred hccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 319 VLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.....+..+++|++|++..+.... .++.. ..+++|+.|.+.++.
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCG--EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEE--ECCCS-TTGGGSCGGGTCSSS
T ss_pred cCChHHhcCcCCCEEECcCCcccc--cCCCC-ccccccChHHhcCCC
Confidence 112223455677777776653210 11222 556778888777765
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.25 E-value=6.9e-08 Score=92.61 Aligned_cols=73 Identities=8% Similarity=0.060 Sum_probs=44.2
Q ss_pred HHHHhhc-CCCceEEEEecCCChHHHhhh-hccCCCCCCCccceEEEEecc--CCChhhHHHH---HhcCCCCeeEEEee
Q 012521 291 ARSALEL-VKRIKSMKILSLPDSMTVLSF-VLNNNLPTFSNLISLELHIDS--CFGWKLLTPF---LKRSPSLKVLNLDF 363 (461)
Q Consensus 291 ~~~~l~~-~~~l~~L~l~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~l---l~~~p~L~~L~l~~ 363 (461)
+...+.. .++|+.|+++. +.+..... .....+..+.+|+.|++..+. ......+..+ +..+++|+.|++++
T Consensus 216 l~~~l~~~~~~L~~L~Ls~--N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCL--NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHSCTTCCEEECCS--SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHhcCCCCceEEECcC--CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 4555555 45999999998 65533211 112234567789999999985 2244444444 44556677777766
Q ss_pred cc
Q 012521 364 SK 365 (461)
Q Consensus 364 ~~ 365 (461)
+.
T Consensus 294 N~ 295 (362)
T 3goz_A 294 KE 295 (362)
T ss_dssp CB
T ss_pred Cc
Confidence 65
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.25 E-value=9e-08 Score=99.88 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=29.7
Q ss_pred cCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHH-HhcCCccCeEEEee
Q 012521 142 LTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKF-FSSCPTLEELTIEG 202 (461)
Q Consensus 142 ~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l-~~~cp~Le~L~L~~ 202 (461)
..+++|++|+|++|.+...+ .+ ..+++|++|+|.+ .+... .-..+ ...++.|+.|++.+
T Consensus 118 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 118 VKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp TTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTT
T ss_pred cccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCccccc-CHHHhhccccccccEEECCC
Confidence 34666666666666554322 22 4566666666665 33211 11111 22456666666665
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.24 E-value=7.3e-08 Score=90.38 Aligned_cols=200 Identities=17% Similarity=0.146 Sum_probs=117.7
Q ss_pred hcCccEEEEEEeecccccccceecccCCcc--cCCCCccEEEeceeeeccCCCCcccc-----CCccEEEeee-ecCChh
Q 012521 112 QRNVRHLFLDVYSTSNFTRHKRILELPQSI--LTCETLVELKLCSDIVIDIPGSGICF-----PSLKILHFGF-CHPDRG 183 (461)
Q Consensus 112 ~~~l~~L~l~~~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~~~~~~~~~-----~~L~~L~L~~-~~~~~~ 183 (461)
-.++++|++.... -...+|..+ ..+++|++|+|+++.+...|.....+ ++|++|+|.+ .+.+
T Consensus 94 l~~L~~L~L~~n~--------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-- 163 (312)
T 1wwl_A 94 ISGLQELTLENLE--------VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-- 163 (312)
T ss_dssp TSCCCEEEEEEEB--------CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC--
T ss_pred cCCccEEEccCCc--------ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc--
Confidence 4689999777664 223566655 45899999999999987655321344 8999999998 4431
Q ss_pred HHHHHHhcCCccCeEEEeeeecCCCCee----EEE-EEcCCcceEEEEEEeecCcccc-eeEEEecCCccEEEEeecccC
Q 012521 184 LMQKFFSSCPTLEELTIEGILHPRDNVQ----TIN-IIVQTLKRLSISVFVMQGYVSK-RIFEIRTPNLEYLSIIANSLA 257 (461)
Q Consensus 184 ~l~~l~~~cp~Le~L~L~~~~c~~~~~~----~~~-i~~~sL~~L~l~~~~~~~~~~~-~~~~~~~p~L~~L~~~~~~~~ 257 (461)
.....+..++.|++|++.+ |...+.. .+. -..++|+.|.+.++........ ..+....++|++|+++++...
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSD--NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CCTTTCCCCSSCCEEECCS--CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred chHHHhccCCCCCEEECCC--CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 1113367899999999998 5422210 000 1236677777766543210000 001112356666666554322
Q ss_pred ceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEe
Q 012521 258 YFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHI 337 (461)
Q Consensus 258 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~ 337 (461)
... + ...+..+++|+.|+++. +.+..+ ...++ .+|++|+++.
T Consensus 242 ~~~----~--------------------------~~~~~~l~~L~~L~Ls~--N~l~~i----p~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 242 DAA----G--------------------------APSCDWPSQLNSLNLSF--TGLKQV----PKGLP--AKLSVLDLSY 283 (312)
T ss_dssp SSC----C--------------------------CSCCCCCTTCCEEECTT--SCCSSC----CSSCC--SEEEEEECCS
T ss_pred ccc----c--------------------------hhhhhhcCCCCEEECCC--CccChh----hhhcc--CCceEEECCC
Confidence 110 0 00123457888888887 554422 11222 6888888888
Q ss_pred ccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 338 DSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 338 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+..... .. +..+|+|+.|+++++.
T Consensus 284 N~l~~~---p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 284 NRLDRN---PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCSC---CC-TTTSCEEEEEECTTCT
T ss_pred CCCCCC---hh-HhhCCCCCEEeccCCC
Confidence 754232 22 5778999999988875
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.21 E-value=8.7e-08 Score=89.78 Aligned_cols=227 Identities=14% Similarity=0.093 Sum_probs=109.0
Q ss_pred CeeEEEEEEcccCcCCcccHHHHHHHHHhcCccEEEEEEeecccccccceecccCCcc--cCCCCccEEEeceeeeccCC
Q 012521 84 DIHNFHLRSSTLREKDFSRVSEWICFAIQRNVRHLFLDVYSTSNFTRHKRILELPQSI--LTCETLVELKLCSDIVIDIP 161 (461)
Q Consensus 84 ~i~~l~l~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~~~ 161 (461)
.++++.+.... .....+...........+++|++.... .....|..+ ..+++|++|+|++|.+....
T Consensus 65 ~l~~l~l~~~~---~~~~~~~~~~~~~~~~~L~~L~l~~n~--------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 65 RVRRLTVGAAQ---VPAQLLVGALRVLAYSRLKELTLEDLK--------ITGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCEEEECSCC---CBHHHHHHHHHHHHHSCCCEEEEESCC--------CBSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred ceeEEEEeCCc---CCHHHHHHHHHhcccCceeEEEeeCCE--------eccchhhhhhhccCCCCCEEEeecccccchh
Confidence 45665554222 223334444444444568888554432 122333333 44777788888777665311
Q ss_pred C-Cc----cccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEE----E-EEcCCcceEEEEEEee
Q 012521 162 G-SG----ICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTI----N-IIVQTLKRLSISVFVM 230 (461)
Q Consensus 162 ~-~~----~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~----~-i~~~sL~~L~l~~~~~ 230 (461)
. .. ..+++|++|+|.+ .+. ......+..++.|+.|+|.+ |...+...+ . ...++|+.|.+.+|..
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSP--AFSCEQVRAFPALTSLDLSD--NPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSC--CCCTTSCCCCTTCCEEECCS--CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcc--hhhHHHhccCCCCCEEECCC--CCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 1 10 2467777777776 332 11112345677777777777 432111000 0 0124555665555432
Q ss_pred cCcccce-eEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecC
Q 012521 231 QGYVSKR-IFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSL 309 (461)
Q Consensus 231 ~~~~~~~-~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~ 309 (461)
....... .+.-..++|++|+++++........... -+..+++|+.|+++.
T Consensus 210 ~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~----------------------------~~~~~~~L~~L~Ls~- 260 (310)
T 4glp_A 210 ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP----------------------------RCMWSSALNSLNLSF- 260 (310)
T ss_dssp CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS----------------------------SCCCCTTCCCEECCS-
T ss_pred CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH----------------------------hccCcCcCCEEECCC-
Confidence 2100000 0011235555555554432211000000 011236788888877
Q ss_pred CChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 310 PDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+.+..+ ... .+++|+.|+++.+...... .+..+|+|+.|+++++.
T Consensus 261 -N~l~~l----p~~--~~~~L~~L~Ls~N~l~~~~----~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 261 -AGLEQV----PKG--LPAKLRVLDLSSNRLNRAP----QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp -SCCCSC----CSC--CCSCCSCEECCSCCCCSCC----CTTSCCCCSCEECSSTT
T ss_pred -CCCCch----hhh--hcCCCCEEECCCCcCCCCc----hhhhCCCccEEECcCCC
Confidence 554422 111 2368888888777542221 24667888888888765
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.21 E-value=2.3e-07 Score=85.00 Aligned_cols=175 Identities=16% Similarity=0.181 Sum_probs=104.4
Q ss_pred cCccEEEEEEeecccccccceecccCC-cccCCCCccEEEeceeeeccCCCCc-cccCCccEEEeee-ecCChhHHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQ-SILTCETLVELKLCSDIVIDIPGSG-ICFPSLKILHFGF-CHPDRGLMQKFF 189 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~L~~L~L~~-~~~~~~~l~~l~ 189 (461)
.++++|++... ....+|. .+..+++|++|+|.++.+..++... ..+++|++|+|.+ .+... -...+
T Consensus 37 ~~l~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSN---------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL--PIGVF 105 (270)
T ss_dssp TTCSEEECCSS---------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC--CTTTT
T ss_pred CCCCEEECcCC---------CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC--CHhHc
Confidence 35777744332 2334554 3445889999999988886655421 5688999999987 44311 12346
Q ss_pred hcCCccCeEEEeeeecCCCCeeEEEE-EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCee
Q 012521 190 SSCPTLEELTIEGILHPRDNVQTINI-IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLK 268 (461)
Q Consensus 190 ~~cp~Le~L~L~~~~c~~~~~~~~~i-~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~ 268 (461)
..++.|+.|++.+ +...++..-.+ ..++|+.|.+.++...... ....-..++|++|+++++......
T Consensus 106 ~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-------- 173 (270)
T 2o6q_A 106 DQLVNLAELRLDR--NQLKSLPPRVFDSLTKLTYLSLGYNELQSLP--KGVFDKLTSLKELRLYNNQLKRVP-------- 173 (270)
T ss_dssp TTCSSCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCC--------
T ss_pred ccccCCCEEECCC--CccCeeCHHHhCcCcCCCEEECCCCcCCccC--HhHccCCcccceeEecCCcCcEeC--------
Confidence 7789999999988 64333221111 2378899988876533110 000123467777777665332210
Q ss_pred EEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEec
Q 012521 269 KAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHID 338 (461)
Q Consensus 269 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 338 (461)
...+..+++|+.|+++. +.+..+ ....+..+++|+.|++..+
T Consensus 174 -----------------------~~~~~~l~~L~~L~L~~--N~l~~~---~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 174 -----------------------EGAFDKLTELKTLKLDN--NQLKRV---PEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -----------------------TTTTTTCTTCCEEECCS--SCCSCC---CTTTTTTCTTCCEEECCSS
T ss_pred -----------------------hhHhccCCCcCEEECCC--CcCCcC---CHHHhccccCCCEEEecCC
Confidence 01245678888899887 554322 1223456778888888776
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.20 E-value=3.4e-08 Score=90.88 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=76.5
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCe
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV 210 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~ 210 (461)
...+|..+ .++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+. . .....+..++.|+.|++.+ +...++
T Consensus 19 l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~L~~--n~l~~~ 91 (276)
T 2z62_A 19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQ-T-IEDGAYQSLSHLSTLILTG--NPIQSL 91 (276)
T ss_dssp CSSCCSSS--CTTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTCCCC-E-ECTTTTTTCTTCCEEECTT--CCCCEE
T ss_pred ccccCCCC--CCCccEEECCCCcccccCHhHh-ccccCCcEEECCCCcCC-c-cCHHHccCCcCCCEEECCC--CccCcc
Confidence 44556543 257999999998876544 34 6789999999988 433 1 1112367789999999988 432111
Q ss_pred eEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCc---eEeecCCCeeEEEEEEEEceeecCCCCcc
Q 012521 211 QTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAY---FVLDEIPFLKKAFVLVEFNVLRRNSSGIF 287 (461)
Q Consensus 211 ~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~ 287 (461)
.. ......++|++|.++++.... ..+..+++|+.+.+..+....
T Consensus 92 ---~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------- 138 (276)
T 2z62_A 92 ---AL----------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-------- 138 (276)
T ss_dssp ---CT----------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--------
T ss_pred ---Ch----------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce--------
Confidence 10 000123556666665543221 235566777776665433211
Q ss_pred hhhHHHHhhcCCCceEEEEec
Q 012521 288 ENDARSALELVKRIKSMKILS 308 (461)
Q Consensus 288 ~~~~~~~l~~~~~l~~L~l~~ 308 (461)
..+...+..+++|+.|+++.
T Consensus 139 -~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 139 -FKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp -CCCCGGGGGCTTCCEEECCS
T ss_pred -ecCchhhccCCCCCEEECCC
Confidence 01122355667777777776
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.20 E-value=5.7e-07 Score=88.90 Aligned_cols=102 Identities=14% Similarity=0.199 Sum_probs=55.0
Q ss_pred cCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE
Q 012521 137 LPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI 215 (461)
Q Consensus 137 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i 215 (461)
+| .+..+++|++|++++|.+..+|.. .++|++|+|.+ .+.. +.. +.+++.|+.|++.+ |...++..
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~---l~~-~~~l~~L~~L~l~~--N~l~~l~~--- 212 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE---LPE-LQNLPFLTAIYADN--NSLKKLPD--- 212 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS---CCC-CTTCTTCCEEECCS--SCCSSCCC---
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc---Ccc-ccCCCCCCEEECCC--CcCCcCCC---
Confidence 45 345577777777777766554433 35777777776 3332 111 46677777777777 54333221
Q ss_pred EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecc
Q 012521 216 IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANS 255 (461)
Q Consensus 216 ~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~ 255 (461)
..++|+.|.+.++..... .. ....++|++|+++++.
T Consensus 213 ~~~~L~~L~l~~n~l~~l---p~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 213 LPLSLESIVAGNNILEEL---PE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCTTCCEEECCSSCCSSC---CC-CTTCTTCCEEECCSSC
T ss_pred CcCcccEEECcCCcCCcc---cc-cCCCCCCCEEECCCCc
Confidence 124666666665543211 11 1134556666665543
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.16 E-value=3e-07 Score=82.50 Aligned_cols=124 Identities=11% Similarity=0.030 Sum_probs=75.9
Q ss_pred cCccEEEEEEeecccccccceecccCCcc-cCCCCccEEEeceee-eccCC--CCccccCCccEEEeee-ecCChhHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSI-LTCETLVELKLCSDI-VIDIP--GSGICFPSLKILHFGF-CHPDRGLMQK 187 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~-l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~ 187 (461)
..+++|++.... ...+|... ..+++|++|+|.++. +..++ .+ ..+++|++|+|.+ ..... .-..
T Consensus 31 ~~l~~L~l~~n~---------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~-i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETH---------LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTY-IDPD 99 (239)
T ss_dssp TTCCEEEEESCC---------CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCE-ECTT
T ss_pred CcccEEEEeCCc---------ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeE-cCHH
Confidence 367788554432 34555543 458999999999986 65544 34 6789999999985 33321 1112
Q ss_pred HHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcc---eEEEEEEeecCcccceeEE----EecCCcc-EEEEeecc
Q 012521 188 FFSSCPTLEELTIEGILHPRDNVQTINIIVQTLK---RLSISVFVMQGYVSKRIFE----IRTPNLE-YLSIIANS 255 (461)
Q Consensus 188 l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~---~L~l~~~~~~~~~~~~~~~----~~~p~L~-~L~~~~~~ 255 (461)
.+.+++.|+.|++.+ |...++.. --..++|+ .|.+.++... ..+. ...++|+ +|+++++.
T Consensus 100 ~f~~l~~L~~L~l~~--n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l-----~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 100 ALKELPLLKFLGIFN--TGLKMFPD-LTKVYSTDIFFILEITDNPYM-----TSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp SEECCTTCCEEEEEE--ECCCSCCC-CTTCCBCCSEEEEEEESCTTC-----CEECTTTTTTTBSSEEEEECCSCC
T ss_pred HhCCCCCCCEEeCCC--CCCccccc-cccccccccccEEECCCCcch-----hhcCcccccchhcceeEEEcCCCC
Confidence 367899999999998 75444433 11235666 8888766111 1111 1346677 77766543
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.16 E-value=1.9e-07 Score=81.16 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=27.1
Q ss_pred ccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 141 ILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
+..+++|++|++++|.+..++.+ ..+++|++|+|.+ .+. +.... .+..+|.|+.|++.+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~~l-~~l~~L~~L~l~~n~l~-~~~~~-~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYNPI-SGLSNLERLRIMGKDVT-SDKIP-NLSGLTSLTLLDISH 121 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCGGG-TTCTTCCEEEEECTTCB-GGGSC-CCTTCTTCCEEECCS
T ss_pred HhcCCCCCEEEccCCCCCcchhh-hcCCCCCEEEeECCccC-cccCh-hhcCCCCCCEEEecC
Confidence 33455555555555544443333 4455555555555 221 11111 134455555555555
No 96
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=5.3e-07 Score=75.80 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=64.8
Q ss_pred eecccCCcccCCCCccEEEeceeeecc--CCCCccccCCccEEEeee-ecCChhHHHHHHhc---CCccCeEEEeeeecC
Q 012521 133 RILELPQSILTCETLVELKLCSDIVID--IPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS---CPTLEELTIEGILHP 206 (461)
Q Consensus 133 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~---cp~Le~L~L~~~~c~ 206 (461)
....+|..-...-.|++|+|++|.+.+ +... .+|++|++|+|.+ ..++|.++..+... ||.|++|+|.+ |.
T Consensus 49 ~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~--C~ 125 (176)
T 3e4g_A 49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS--CG 125 (176)
T ss_dssp CGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES--CT
T ss_pred ccccCCcccCCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC--CC
Confidence 345666544445679999999998754 2233 5789999999999 67789999988763 78999999999 63
Q ss_pred ---CCCeeEEEEEcCCcceEEEEEEee
Q 012521 207 ---RDNVQTINIIVQTLKRLSISVFVM 230 (461)
Q Consensus 207 ---~~~~~~~~i~~~sL~~L~l~~~~~ 230 (461)
..++..+. .+++|++|.+.+|..
T Consensus 126 ~ITD~Gl~~L~-~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 126 NVTDKGIIALH-HFRNLKYLFLSDLPG 151 (176)
T ss_dssp TCCHHHHHHGG-GCTTCCEEEEESCTT
T ss_pred cCCHHHHHHHh-cCCCCCEEECCCCCC
Confidence 12222222 346666666666543
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.12 E-value=3.7e-07 Score=93.32 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=53.5
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcce
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLKR 222 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~ 222 (461)
+++|+.|.|.++.+..++.+ ..+++|+.|+|.+ .+.+... +..++.|+.|.|.+ |...++..+ -..++|+.
T Consensus 42 L~~L~~L~l~~n~i~~l~~l-~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~--N~l~~l~~l-~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGI-QYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDE--NKIKDLSSL-KDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTG-GGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCS--SCCCCCTTS-TTCTTCCE
T ss_pred CCCCCEEECcCCCCCCChHH-ccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcC--CCCCCChhh-ccCCCCCE
Confidence 45666677776666665555 6667777777766 3332221 56677777777766 543332210 01256666
Q ss_pred EEEEEEeecCcccceeEEEecCCccEEEEeec
Q 012521 223 LSISVFVMQGYVSKRIFEIRTPNLEYLSIIAN 254 (461)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~ 254 (461)
|.+.+|...... .....|+|+.|.++++
T Consensus 114 L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 114 LSLEHNGISDIN----GLVHLPQLESLYLGNN 141 (605)
T ss_dssp EECTTSCCCCCG----GGGGCTTCSEEECCSS
T ss_pred EEecCCCCCCCc----cccCCCccCEEECCCC
Confidence 666655433210 0123466666666554
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.12 E-value=6.1e-07 Score=90.79 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=80.0
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
.+++.|++.... ...+|..++ ++|++|+|++|.+..+|. .+++|++|+|.+ .+.. +.. +.
T Consensus 59 ~~L~~L~Ls~n~---------L~~lp~~l~--~~L~~L~Ls~N~l~~ip~---~l~~L~~L~Ls~N~l~~---ip~-l~- 119 (571)
T 3cvr_A 59 NQFSELQLNRLN---------LSSLPDNLP--PQITVLEITQNALISLPE---LPASLEYLDACDNRLST---LPE-LP- 119 (571)
T ss_dssp TTCSEEECCSSC---------CSCCCSCCC--TTCSEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC---CCC-CC-
T ss_pred CCccEEEeCCCC---------CCccCHhHc--CCCCEEECcCCCCccccc---ccCCCCEEEccCCCCCC---cch-hh-
Confidence 478888554332 334666553 789999999888877662 478899999988 4432 222 22
Q ss_pred CCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEE
Q 012521 192 CPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAF 271 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~ 271 (461)
..|+.|+|.+ |...++.. ..++|+.|.++++.... +....++|++|+++++....+.. -.++|+.++
T Consensus 120 -~~L~~L~Ls~--N~l~~lp~---~l~~L~~L~Ls~N~l~~------lp~~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~ 186 (571)
T 3cvr_A 120 -ASLKHLDVDN--NQLTMLPE---LPALLEYINADNNQLTM------LPELPTSLEVLSVRNNQLTFLPE-LPESLEALD 186 (571)
T ss_dssp -TTCCEEECCS--SCCSCCCC---CCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEE
T ss_pred -cCCCEEECCC--CcCCCCCC---cCccccEEeCCCCccCc------CCCcCCCcCEEECCCCCCCCcch-hhCCCCEEE
Confidence 2888888888 65555443 45788888887765432 11145788888887764432211 114555554
Q ss_pred EEE
Q 012521 272 VLV 274 (461)
Q Consensus 272 l~~ 274 (461)
++.
T Consensus 187 Ls~ 189 (571)
T 3cvr_A 187 VST 189 (571)
T ss_dssp CCS
T ss_pred CcC
Confidence 444
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.11 E-value=1.5e-07 Score=85.98 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=75.0
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcce
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLKR 222 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~ 222 (461)
..+++.+.++++.+..++.+ ..+++|++|++.+ .+.+-. -+..++.|+.|++.+ |...++.. --..++|+.
T Consensus 18 l~~l~~l~l~~~~i~~~~~~-~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~--N~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSH--NQISDLSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECH-HHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCS--SCCCCCGG-GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcccccch-hhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCC--CccCCChh-hccCCCCCE
Confidence 55677778888877766655 7899999999998 544322 367899999999999 75555543 112378889
Q ss_pred EEEEEEeecCcccceeEEEecCCccEEEEeecccCce-EeecCCCeeEEEE
Q 012521 223 LSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF-VLDEIPFLKKAFV 272 (461)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~l 272 (461)
|.+.++...... .+. .++|++|+++++..... .+..+++|+.+++
T Consensus 90 L~L~~N~l~~l~---~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L 135 (263)
T 1xeu_A 90 LSVNRNRLKNLN---GIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSI 135 (263)
T ss_dssp EECCSSCCSCCT---TCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEEC
T ss_pred EECCCCccCCcC---ccc--cCcccEEEccCCccCCChhhcCcccccEEEC
Confidence 988877654321 111 17888888877644322 1233444444433
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.10 E-value=1.7e-06 Score=85.54 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=33.4
Q ss_pred CCceEEEEecCCChHHHhhhhccCCCC-CCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 299 KRIKSMKILSLPDSMTVLSFVLNNNLP-TFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 299 ~~l~~L~l~~~~~~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
++++.|+++. +.+.. +| .+.+|+.|++..+.... +.. .+++|+.|+++.+.
T Consensus 317 ~~L~~L~Ls~--N~l~~--------lp~~~~~L~~L~L~~N~l~~---lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 317 PSLEELNVSN--NKLIE--------LPALPPRLERLIASFNHLAE---VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp TTCCEEECCS--SCCSC--------CCCCCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSC
T ss_pred CcCCEEECCC--Ccccc--------ccccCCcCCEEECCCCcccc---ccc---hhhhccEEECCCCC
Confidence 4778888876 54331 22 35788888887774422 222 46889999998875
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.09 E-value=1.9e-07 Score=87.41 Aligned_cols=187 Identities=16% Similarity=0.040 Sum_probs=100.1
Q ss_pred CCCccEEEeceeeeccC-CCCc--cccCCccEEEeee-ecCChh-HHH-HHHhcCCccCeEEEeeeecCCCCeeEEEE-E
Q 012521 144 CETLVELKLCSDIVIDI-PGSG--ICFPSLKILHFGF-CHPDRG-LMQ-KFFSSCPTLEELTIEGILHPRDNVQTINI-I 216 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~-~~~~--~~~~~L~~L~L~~-~~~~~~-~l~-~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~ 216 (461)
+++|++|+|++|.+... +... ..+++|++|+|.+ .+.+.. .+. .-+..+|.|+.|++.+ |...++..-.+ .
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~--n~l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ--AHSPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC--CSSCCCCTTSCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC--CCcchhhHHHhcc
Confidence 56799999999887542 2221 4578999999998 444211 111 2234789999999988 64322211111 2
Q ss_pred cCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhh
Q 012521 217 VQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALE 296 (461)
Q Consensus 217 ~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
.++|+.|.++++...+. ..+ .....+..+++|+.+.++.+.... .......++.
T Consensus 168 l~~L~~L~Ls~N~l~~~---~~~----------------~~~~~~~~l~~L~~L~Ls~N~l~~-------l~~~~~~l~~ 221 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGE---RGL----------------MAALCPHKFPAIQNLALRNTGMET-------PTGVCAALAA 221 (310)
T ss_dssp CTTCCEEECCSCTTCHH---HHH----------------HTTSCTTSSCCCCSCBCCSSCCCC-------HHHHHHHHHH
T ss_pred CCCCCEEECCCCCCccc---hhh----------------hHHHhhhcCCCCCEEECCCCCCCc-------hHHHHHHHHh
Confidence 24555555554432100 000 000111234444444333322110 0022333567
Q ss_pred cCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeecc
Q 012521 297 LVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 297 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.+++|++|+++. +.+..........+..+++|++|+++.+.... ++.-+ +++|+.|+++.+.
T Consensus 222 ~l~~L~~L~Ls~--N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~---lp~~~--~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 222 AGVQPHSLDLSH--NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ---VPKGL--PAKLRVLDLSSNR 283 (310)
T ss_dssp HTCCCSSEECTT--SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS---CCSCC--CSCCSCEECCSCC
T ss_pred cCCCCCEEECCC--CCCCccchhhHHhccCcCcCCEEECCCCCCCc---hhhhh--cCCCCEEECCCCc
Confidence 889999999998 66543211111222223699999998875422 22211 3899999999886
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.07 E-value=8.2e-07 Score=80.34 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=40.5
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
...+|..+. ++|++|+|.++.+..++ .+ ..+++|++|+|.+ .+.. .....+..++.|+.|+|.+
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCc--cCHhHhccCCcCCEEECCC
Confidence 345554433 57888888887775543 23 5678888888877 4331 1123356678888888877
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.06 E-value=4.6e-07 Score=76.46 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=78.4
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
.++++|++.... .....+|..+..+++|++|+|.+|.+..+..+ ..+++|++|+|.+ .+.+. +..++..
T Consensus 24 ~~L~~L~l~~n~-------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~~--~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCK-------SNDGKIEGLTAEFVNLEFLSLINVGLISVSNL-PKLPKLKKLELSENRIFGG--LDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCB-------CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSC-CCCSSCCEEEEESCCCCSC--CCHHHHH
T ss_pred ccCCEEECCCCC-------CChhhHHHHHHhCCCCCEEeCcCCCCCChhhh-ccCCCCCEEECcCCcCchH--HHHHHhh
Confidence 467888544332 11136676666688999999999888776555 7789999999998 54421 4556777
Q ss_pred CCccCeEEEeeeecCCCCeeEE--EEEcCCcceEEEEEEeecCcccc-eeEEEecCCccEEEEeec
Q 012521 192 CPTLEELTIEGILHPRDNVQTI--NIIVQTLKRLSISVFVMQGYVSK-RIFEIRTPNLEYLSIIAN 254 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~~~--~i~~~sL~~L~l~~~~~~~~~~~-~~~~~~~p~L~~L~~~~~ 254 (461)
+|.|+.|++.+ |...++..+ -...++|+.|.+.++........ .......|+|++|+++++
T Consensus 94 l~~L~~L~Ls~--N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSG--NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBS--SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccC--CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999988 654443211 11235677777666543321000 011223456666665554
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.00 E-value=2.5e-07 Score=85.66 Aligned_cols=169 Identities=14% Similarity=0.087 Sum_probs=87.9
Q ss_pred CCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEEcCCcc
Q 012521 145 ETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLK 221 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~ 221 (461)
++|++|+|+++.+...+ .+ ..+++|++|+|.+ .+..-.. ...+|.|+.|++.+ +....+.......++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSH--NQLQSLPLLGQTLPALT 103 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTSCCCEEEC----CSCCTTCCEEECCS--SCCSSCCCCTTTCTTCC
T ss_pred CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCCccCcccC----CCCCCcCCEEECCC--CcCCcCchhhccCCCCC
Confidence 45666666666554322 23 4566666666666 3321111 14566666666666 43222221111225666
Q ss_pred eEEEEEEeecCcccceeEEEecCCccEEEEeecccCceE---eecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcC
Q 012521 222 RLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFV---LDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELV 298 (461)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (461)
.|.+.++...... ....-..++|++|.++++...... +..+++|+.+.++.+.... .....+..+
T Consensus 104 ~L~l~~N~l~~l~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------l~~~~~~~l 171 (290)
T 1p9a_G 104 VLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE----------LPAGLLNGL 171 (290)
T ss_dssp EEECCSSCCCCCC--SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC----------CCTTTTTTC
T ss_pred EEECCCCcCcccC--HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc----------cCHHHhcCc
Confidence 6666655432100 011123467777777765443322 3456677766554432211 111235678
Q ss_pred CCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEec
Q 012521 299 KRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHID 338 (461)
Q Consensus 299 ~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 338 (461)
++|+.|+++. +.+..+ ...+....+|++|.+..+
T Consensus 172 ~~L~~L~L~~--N~l~~i----p~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 172 ENLDTLLLQE--NSLYTI----PKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCCEEECCS--SCCCCC----CTTTTTTCCCSEEECCSC
T ss_pred CCCCEEECCC--CcCCcc----ChhhcccccCCeEEeCCC
Confidence 8999999998 666533 222334557888888876
No 105
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.98 E-value=3.1e-06 Score=76.99 Aligned_cols=36 Identities=33% Similarity=0.707 Sum_probs=34.1
Q ss_pred ccCCCCChHHHHHHHcCCCccchh-hhcccchhhHHh
Q 012521 14 DITSRLPDHLLCRILSCLPTEDAV-RTCILSSRWRDL 49 (461)
Q Consensus 14 D~~s~LPd~vl~~Ils~Lp~~~~~-~~s~vsrrWr~l 49 (461)
..+..||||+|.+||++||.++++ +++.|||+||.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999986
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.91 E-value=5.1e-07 Score=74.48 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=68.2
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
.++++|++.... .....+|..+..+++|++|+|++|.+..+..+ ..+++|++|+|.+ .+.+ .+...+..
T Consensus 17 ~~l~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~Ls~n~i~~--~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSR-------SNEGKLEGLTDEFEELEFLSTINVGLTSIANL-PKLNKLKKLELSDNRVSG--GLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCB-------CBTTBCCSCCTTCTTCCEEECTTSCCCCCTTC-CCCTTCCEEECCSSCCCS--CTHHHHHH
T ss_pred ccCeEEEccCCc-------CChhHHHHHHhhcCCCcEEECcCCCCCCchhh-hcCCCCCEEECCCCcccc--hHHHHhhh
Confidence 367777443322 11135777666789999999999988776555 7889999999998 5442 25566778
Q ss_pred CCccCeEEEeeeecCCCCee--EEEEEcCCcceEEEEEEe
Q 012521 192 CPTLEELTIEGILHPRDNVQ--TINIIVQTLKRLSISVFV 229 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~--~~~i~~~sL~~L~l~~~~ 229 (461)
+|.|+.|++.+ |...++. ..-...++|+.|.+.++.
T Consensus 87 l~~L~~L~ls~--N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 87 CPNLTHLNLSG--NKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTCCEEECTT--SCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCCEEECCC--CcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 99999999998 6544331 000112555555555543
No 107
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.87 E-value=2.2e-06 Score=77.01 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=32.7
Q ss_pred cCCCCChHHHHHHHcCCCccchhhhcccchhhHHh
Q 012521 15 ITSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDL 49 (461)
Q Consensus 15 ~~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~l 49 (461)
-+++||+||+.+||+||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999963
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.79 E-value=9.2e-06 Score=77.28 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=52.4
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCe
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV 210 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~ 210 (461)
...+|..+ .+++++|+|+++.+..++. + .++++|++|+|.+ ...+. .=...+.+++.|+++.+.. + ..+
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~--~--N~l 92 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEK--A--NNL 92 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEE--E--TTC
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhccc--C--Ccc
Confidence 34566544 3578889998888876653 4 6788899999887 33211 0012356677777655554 2 223
Q ss_pred eEEE----EEcCCcceEEEEEEee
Q 012521 211 QTIN----IIVQTLKRLSISVFVM 230 (461)
Q Consensus 211 ~~~~----i~~~sL~~L~l~~~~~ 230 (461)
..+. -..++|+.|.+.++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECC
T ss_pred cccCchhhhhcccccccccccccc
Confidence 3321 1236677777766643
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.78 E-value=3.4e-06 Score=70.99 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=54.2
Q ss_pred CCCccEEEeceeeec--cCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCe-eEEEEEcCC
Q 012521 144 CETLVELKLCSDIVI--DIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV-QTINIIVQT 219 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~--~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~-~~~~i~~~s 219 (461)
.++|++|+|++|.+. .++.....+++|++|+|.+ .+.+. ..+..+|.|+.|++.+ |...+. ....-..++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSE--NRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEES--CCCCSCCCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcC--CcCchHHHHHHhhCCC
Confidence 478999999999887 5554336889999999998 54322 4577899999999998 654432 111111356
Q ss_pred cceEEEEEEe
Q 012521 220 LKRLSISVFV 229 (461)
Q Consensus 220 L~~L~l~~~~ 229 (461)
|+.|.+.++.
T Consensus 97 L~~L~Ls~N~ 106 (168)
T 2ell_A 97 LTHLNLSGNK 106 (168)
T ss_dssp CCEEECBSSS
T ss_pred CCEEeccCCc
Confidence 6666665553
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.77 E-value=1.6e-05 Score=81.72 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=48.3
Q ss_pred ecccCCccc-CCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCC
Q 012521 134 ILELPQSIL-TCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDN 209 (461)
Q Consensus 134 ~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~ 209 (461)
...+|+..| .+++|++|+|++|.+..++. + .++++|++|+|.+ .+.. .-...+.+++.|++|++.+ |...+
T Consensus 64 i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~Ls~--N~l~~ 138 (635)
T 4g8a_A 64 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVE--TNLAS 138 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEECTT--SCCCC
T ss_pred CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEECCC--CcCCC
Confidence 344554333 37777777777776654432 3 5667777777776 3321 1112356677777777776 53333
Q ss_pred eeEEEEE-cCCcceEEEEEEe
Q 012521 210 VQTINII-VQTLKRLSISVFV 229 (461)
Q Consensus 210 ~~~~~i~-~~sL~~L~l~~~~ 229 (461)
+....+. .++|+.|.+.++.
T Consensus 139 l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 139 LENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp STTCCCTTCTTCCEEECCSSC
T ss_pred CChhhhhcCcccCeeccccCc
Confidence 3221111 2556666655443
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.74 E-value=3.4e-06 Score=73.18 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=45.5
Q ss_pred ccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 136 ELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
.+|..+..+++|++|+|++|.+..++.+ ..+++|++|+|.+ .+. .+..++..+|.|+.|++.+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~~~-~~l~~L~~L~l~~n~l~---~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKISSL-SGMENLRILSLGRNLIK---KIENLDAVADTLEELWISY 102 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCCCH-HHHTTCCEEEEEEEEEC---SCSSHHHHHHHCSEEEEEE
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccccc-ccCCCCCEEECCCCCcc---cccchhhcCCcCCEEECcC
Confidence 3444555688899999998888777755 7788889988888 443 2333455667888888887
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.74 E-value=7e-06 Score=74.10 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=46.9
Q ss_pred ccCC-cccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 136 ELPQ-SILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 136 ~lp~-~l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
.++. .+..+++|++|+|+++.+...+. + ..+++|++|+|.+ .+.. .....+..++.|+.|+|.+
T Consensus 49 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 49 TLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCS
T ss_pred ccCHhHhcCcccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCCcccc--cChhHhcccCCCCEEEcCC
Confidence 3443 34458999999999998866543 4 6789999999998 4431 1123467789999999988
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.73 E-value=1.2e-05 Score=81.35 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=68.4
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
.+++.|++.... ...+| ..+++|++|+|++|.+..+|.+ . .+|++|+|.+ .+.. +.. .
T Consensus 80 ~~L~~L~Ls~N~---------l~~ip---~~l~~L~~L~Ls~N~l~~ip~l-~--~~L~~L~Ls~N~l~~---lp~---~ 138 (571)
T 3cvr_A 80 PQITVLEITQNA---------LISLP---ELPASLEYLDACDNRLSTLPEL-P--ASLKHLDVDNNQLTM---LPE---L 138 (571)
T ss_dssp TTCSEEECCSSC---------CSCCC---CCCTTCCEEECCSSCCSCCCCC-C--TTCCEEECCSSCCSC---CCC---C
T ss_pred CCCCEEECcCCC---------Ccccc---cccCCCCEEEccCCCCCCcchh-h--cCCCEEECCCCcCCC---CCC---c
Confidence 567777443332 22455 2367788888888777665553 2 2788888877 4432 111 5
Q ss_pred CCccCeEEEeeeecCCCCeeEEEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccC
Q 012521 192 CPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLA 257 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~~~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~ 257 (461)
++.|+.|+|.+ |...++.. ..++|+.|.+++|..... .. +. ++|++|+++++...
T Consensus 139 l~~L~~L~Ls~--N~l~~lp~---~l~~L~~L~Ls~N~L~~l---p~--l~-~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 139 PALLEYINADN--NQLTMLPE---LPTSLEVLSVRNNQLTFL---PE--LP-ESLEALDVSTNLLE 193 (571)
T ss_dssp CTTCCEEECCS--SCCSCCCC---CCTTCCEEECCSSCCSCC---CC--CC-TTCCEEECCSSCCS
T ss_pred CccccEEeCCC--CccCcCCC---cCCCcCEEECCCCCCCCc---ch--hh-CCCCEEECcCCCCC
Confidence 77888888877 65444433 346788888877654421 11 22 78888888776443
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.69 E-value=2e-06 Score=70.92 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=54.5
Q ss_pred CCCccEEEeceeeec--cCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCC-eeEEEEEcCC
Q 012521 144 CETLVELKLCSDIVI--DIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDN-VQTINIIVQT 219 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~--~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~-~~~~~i~~~s 219 (461)
.++|++|++++|.+. .++.....+++|++|+|.+ .+.+. ..+..+|.|+.|++.+ |...+ +....-..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~--n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSD--NRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCS--SCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCC--CcccchHHHHhhhCCC
Confidence 468999999999887 5554326889999999998 54432 4577899999999998 65443 2111112355
Q ss_pred cceEEEEEEe
Q 012521 220 LKRLSISVFV 229 (461)
Q Consensus 220 L~~L~l~~~~ 229 (461)
|+.|.+.++.
T Consensus 90 L~~L~ls~N~ 99 (149)
T 2je0_A 90 LTHLNLSGNK 99 (149)
T ss_dssp CCEEECTTSC
T ss_pred CCEEECCCCc
Confidence 6666665543
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.68 E-value=2.8e-06 Score=74.31 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=43.2
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
...+|..+ .++|++|+|.++.+..++. + ..+++|++|+|.+ .+.. .....+..++.|+.|++.+
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVF-DELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCS
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhh-cccccCcEEECCCCccCc--cChhhcCCCCCcCEEECCC
Confidence 34455433 3578999999888766553 3 5788899999987 4431 1123456788888888887
No 116
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.66 E-value=2.5e-06 Score=87.88 Aligned_cols=106 Identities=12% Similarity=0.193 Sum_probs=54.8
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEEeeccccccCCCCC
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFSKAHKLTPNTL 374 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~ 374 (461)
+..+++|+.|+|+. +.+..+ ....+..+++|+.|+|+.+..... ....+.++++|+.|+|+.+.-....+.
T Consensus 490 ~~~l~~L~~L~Ls~--N~L~~l---~~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~~~l~~L~~L~Ls~N~l~~~~~~-- 560 (635)
T 4g8a_A 490 FTELRNLTFLDLSQ--CQLEQL---SPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYSLNHIMTSKKQ-- 560 (635)
T ss_dssp CTTCTTCCEEECTT--SCCCEE---CTTTTTTCTTCCEEECTTSCCCBC--CCGGGTTCTTCCEEECTTSCCCBCCSS--
T ss_pred hhhccccCEEECCC--CccCCc---ChHHHcCCCCCCEEECCCCcCCCC--ChhHHhCCCCCCEEECCCCcCCCCCHH--
Confidence 45566677777766 443322 122344556666666665532111 112356677777777776642000000
Q ss_pred CcccccccccccCCccccccccceEEEEEE--eeccchhHHHHHHHHHhcCc
Q 012521 375 QDIVFEDLVCVEPECAPNCLSSCVEVIEIT--NLKREDYELEMVRYLLENSK 424 (461)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~--~~~g~~~~~~l~~~ll~~a~ 424 (461)
.+. ...++|+++.+. .|.+.+.-..|..++-++..
T Consensus 561 ---------~l~------~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 561 ---------ELQ------HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp ---------CTT------CCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred ---------HHH------hhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence 011 122578888886 46666655567777655433
No 117
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.66 E-value=3.7e-06 Score=80.62 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=48.3
Q ss_pred hHHHHhhcCCCceEEEEecCCChHHHhhh-hccCCCCCCCccceEEEEeccCC--ChhhHHHHHhcCCCCeeEEEeecc
Q 012521 290 DARSALELVKRIKSMKILSLPDSMTVLSF-VLNNNLPTFSNLISLELHIDSCF--GWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 290 ~~~~~l~~~~~l~~L~l~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
.+...+...++|++|+|+. +.+..... .....+....+|+.|+|..|... ....+...++.+|+|+.|+|+.+.
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~--N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLH--TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHTCSSCCEEECTT--SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhcCCCcCEEeCCC--CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3455566778888888887 65543211 11223344557888888887542 233466677788999999999875
No 118
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.64 E-value=3e-06 Score=80.66 Aligned_cols=213 Identities=15% Similarity=0.063 Sum_probs=118.6
Q ss_pred cCccEEEEEEeecccccccceecccCCcccC-CCCccEEEeceeee-ccCC--CCccccCCccEEE-eee-ecCChhHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILT-CETLVELKLCSDIV-IDIP--GSGICFPSLKILH-FGF-CHPDRGLMQ 186 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~l-~~~~--~~~~~~~~L~~L~-L~~-~~~~~~~l~ 186 (461)
.++++|+|... ....+|...|. +++|++|+|++|.+ ..++ .+ .++++|+++. +.. ... ..-.
T Consensus 30 ~~l~~L~Ls~N---------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~N~l~--~l~~ 97 (350)
T 4ay9_X 30 RNAIELRFVLT---------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKANNLL--YINP 97 (350)
T ss_dssp TTCSEEEEESC---------CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEETTCC--EECT
T ss_pred CCCCEEEccCC---------cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccCCccc--ccCc
Confidence 47888866543 35577876655 99999999999875 3333 23 5677777644 443 222 1112
Q ss_pred HHHhcCCccCeEEEeeeecCCCCeeEE-EEEcCCcceEEEEEEeecCcccceeEEE-----ecCCccEEEEeecccCceE
Q 012521 187 KFFSSCPTLEELTIEGILHPRDNVQTI-NIIVQTLKRLSISVFVMQGYVSKRIFEI-----RTPNLEYLSIIANSLAYFV 260 (461)
Q Consensus 187 ~l~~~cp~Le~L~L~~~~c~~~~~~~~-~i~~~sL~~L~l~~~~~~~~~~~~~~~~-----~~p~L~~L~~~~~~~~~~~ 260 (461)
..+..++.|+.|.+.+ +....+... .....++..|.+.++... ..+.. ....++.|.++++....+.
T Consensus 98 ~~f~~l~~L~~L~l~~--n~l~~~~~~~~~~~~~l~~l~l~~~~~i-----~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISN--TGIKHLPDVHKIHSLQKVLLDIQDNINI-----HTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TSBCCCTTCCEEEEEE--ECCSSCCCCTTCCBSSCEEEEEESCTTC-----CEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred hhhhhccccccccccc--cccccCCchhhcccchhhhhhhcccccc-----ccccccchhhcchhhhhhccccccccCCC
Confidence 3467899999999998 644333221 123355666666544322 11111 1245778888776544332
Q ss_pred ee--cCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEec
Q 012521 261 LD--EIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHID 338 (461)
Q Consensus 261 ~~--~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~ 338 (461)
.. ...+|+.+.+..+.... ..-...+.++++|+.|+++. +.+..+ ....|.+|++|.+..+
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~---------~i~~~~f~~l~~L~~LdLs~--N~l~~l------p~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLE---------ELPNDVFHGASGPVILDISR--TRIHSL------PSYGLENLKKLRARST 233 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCC---------CCCTTTTTTEECCSEEECTT--SCCCCC------CSSSCTTCCEEECTTC
T ss_pred hhhccccchhHHhhccCCccc---------CCCHHHhccCcccchhhcCC--CCcCcc------ChhhhccchHhhhccC
Confidence 11 22334433322111111 11112457788999999998 655432 1124777887765444
Q ss_pred cCCChhhHHHHHhcCCCCeeEEEeec
Q 012521 339 SCFGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 339 ~~~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
.. ...++. +...++|+.+++...
T Consensus 234 ~~--l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YN--LKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TT--CCCCCC-TTTCCSCCEEECSCH
T ss_pred CC--cCcCCC-chhCcChhhCcCCCC
Confidence 22 112222 467788988888653
No 119
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.60 E-value=0.00011 Score=70.00 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCCCeeEEEEEEcccCcCCc-ccHHHHHHHHH-hcCccEEEEEEeeccc--ccccceecccCCcccCC
Q 012521 69 FLNFVERVLGLCQLKDIHNFHLRSSTLREKDF-SRVSEWICFAI-QRNVRHLFLDVYSTSN--FTRHKRILELPQSILTC 144 (461)
Q Consensus 69 ~~~~v~~~l~~~~~~~i~~l~l~~~~~~~~~~-~~~~~wl~~~~-~~~l~~L~l~~~~~~~--~~~~~~~~~lp~~l~~~ 144 (461)
+.+.+.+++.......|+.+.+......+... ..+..+....- -.+++.|.|....... ..| .....++..+..+
T Consensus 93 ~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~-~~~~~L~~ll~~~ 171 (362)
T 2ra8_A 93 GVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISW-IEQVDLSPVLDAM 171 (362)
T ss_dssp TCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGG-CBCCBCHHHHHTC
T ss_pred HHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhccccc-ccccCHHHHHhcC
Confidence 33445566655444567877766432111111 12333332221 2589999653221000 000 0111344444558
Q ss_pred CCccEEEeceee-eccCCCCccccCCccEEEeeeecCChhHHHHHHh-cCCccCeEEEee
Q 012521 145 ETLVELKLCSDI-VIDIPGSGICFPSLKILHFGFCHPDRGLMQKFFS-SCPTLEELTIEG 202 (461)
Q Consensus 145 ~~L~~L~L~~~~-l~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~L~~ 202 (461)
|+|++|.|.++. +.. +.. ..++|++|.|.....+++.+..+.. .+|+|+.|+|..
T Consensus 172 P~L~~L~L~g~~~l~l-~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSI-GKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp TTCCEEEEECCBTCBC-CSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CCCcEEEEeCCCCcee-ccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 999999998773 332 333 3799999999884455777777654 699999999964
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.59 E-value=8e-06 Score=69.34 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=38.3
Q ss_pred cCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 142 LTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 142 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
..+.+|++|.|++|.+..++.+....++|+.|+|.+ .+.+- .-+..++.|+.|++.+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCS
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCC
Confidence 346778888888887776665523334888888887 44321 2356778888888877
No 121
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.49 E-value=2.2e-05 Score=77.33 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=36.7
Q ss_pred CCCCccCCCCChHHHHHHHcCCCccchhhhcccchhhHHh
Q 012521 10 NARGDITSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDL 49 (461)
Q Consensus 10 ~~~~D~~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~l 49 (461)
.-..|.++.||+|++.+||+|||.+++++++.|||+|+++
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999865
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.47 E-value=3.3e-05 Score=68.13 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=41.1
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
...+|..+. ++|++|+|.++.+..++ .+ ..+++|++|+|.+ .+. . .....+.+++.|+.|+|.+
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~-~-~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQIS-E-LAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCC-E-ECTTTTTTCSSCCEEECCS
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCC-C-cCHHHhhCCcCCCEEECCC
Confidence 445555443 67888888888776544 34 6678888888887 332 1 1122356678888888877
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.41 E-value=3.7e-05 Score=73.38 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=39.1
Q ss_pred cccCCcccCCCCccEEEeceeeeccCCCC-cc-ccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 135 LELPQSILTCETLVELKLCSDIVIDIPGS-GI-CFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~-~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
..+|..+ .+.++.|+|+++.+..++.. .. .+++|++|+|.+ .+..- ....+.+++.|+.|+|.+
T Consensus 31 ~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i--~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 31 PNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI--SSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp SSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCS
T ss_pred CccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc--ChhhccCCCCCCEEECCC
Confidence 3455433 24578888888877554422 13 678888888887 33211 112356778888888877
No 124
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.34 E-value=0.0001 Score=72.14 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=37.3
Q ss_pred CCCCCccCCCCChHHHHHHHcCCCccchhhhcccchhhHHh
Q 012521 9 DNARGDITSRLPDHLLCRILSCLPTEDAVRTCILSSRWRDL 49 (461)
Q Consensus 9 ~~~~~D~~s~LPd~vl~~Ils~Lp~~~~~~~s~vsrrWr~l 49 (461)
+.-..|.++.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 34457999999999999999999999999999999999863
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.33 E-value=2.5e-05 Score=69.40 Aligned_cols=89 Identities=17% Similarity=0.075 Sum_probs=53.0
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCe
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV 210 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~ 210 (461)
...+|..+ .++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+..- -...+.+++.|+.|+|.+ +....+
T Consensus 31 l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i--~~~~~~~l~~L~~L~Ls~--N~l~~l 103 (229)
T 3e6j_A 31 HASVPAGI--PTNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGAL--PVGVFDSLTQLTVLDLGT--NQLTVL 103 (229)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCS--SCCCCC
T ss_pred cCccCCCC--CCCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCc--ChhhcccCCCcCEEECCC--CcCCcc
Confidence 44555543 378888888888876643 23 6788888888888 44211 113356788888888888 543322
Q ss_pred eEEEE-EcCCcceEEEEEEe
Q 012521 211 QTINI-IVQTLKRLSISVFV 229 (461)
Q Consensus 211 ~~~~i-~~~sL~~L~l~~~~ 229 (461)
..-.. ..++|+.|.+.++.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhCcchhhCeEeccCCc
Confidence 11001 12556666665443
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.30 E-value=2.2e-05 Score=69.72 Aligned_cols=79 Identities=25% Similarity=0.234 Sum_probs=53.3
Q ss_pred cCccEEEEEEeecccccccceeccc-CCcccCCCCccEEEeceeeeccCCCC-ccccCCccEEEeee-ecCChhHHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILEL-PQSILTCETLVELKLCSDIVIDIPGS-GICFPSLKILHFGF-CHPDRGLMQKFF 189 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~L~~-~~~~~~~l~~l~ 189 (461)
.+++.|++.... ...+ |..+..+++|++|+|+++.+..++.. ...+++|++|+|.+ .+.. .....+
T Consensus 40 ~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQ---------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVF 108 (229)
T ss_dssp TTCSEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTT
T ss_pred CCCCEEEcCCCc---------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHh
Confidence 567777444332 2334 33444588999999999888766532 16789999999988 4431 112345
Q ss_pred hcCCccCeEEEee
Q 012521 190 SSCPTLEELTIEG 202 (461)
Q Consensus 190 ~~cp~Le~L~L~~ 202 (461)
..++.|+.|+|.+
T Consensus 109 ~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 109 DRLVHLKELFMCC 121 (229)
T ss_dssp TTCTTCCEEECCS
T ss_pred CcchhhCeEeccC
Confidence 6789999999988
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.29 E-value=2.6e-05 Score=68.79 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=26.5
Q ss_pred CccEEEeceeeeccCCC---CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 146 TLVELKLCSDIVIDIPG---SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 146 ~L~~L~L~~~~l~~~~~---~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
.+++|+|+++.+..++. + ..+++|++|+|.+ .+. . .....+.+++.|++|+|.+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~-~~l~~L~~L~L~~N~i~-~-i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIF-KKLPQLRKINFSNNKIT-D-IEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCG-GGCTTCCEEECCSSCCC-E-ECTTTTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCchhhh-ccCCCCCEEECCCCcCC-E-ECHHHhCCCCCCCEEECCC
Confidence 45566666665544321 2 4566666666665 222 1 0011244555666666555
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.27 E-value=3.1e-05 Score=67.53 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=51.3
Q ss_pred cCccEEEEEEeecccccccceecccCCccc-CCCCccEEEeceeeeccCCCC-ccccCCccEEEeee-ecCChhHHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSIL-TCETLVELKLCSDIVIDIPGS-GICFPSLKILHFGF-CHPDRGLMQKFF 189 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~L~~-~~~~~~~l~~l~ 189 (461)
.++++|++.... ...++...+ .+++|++|+|.++.+..++.. ...+++|++|+|.+ .+.. .....+
T Consensus 28 ~~l~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNS---------LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVF 96 (208)
T ss_dssp TTCSEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTT
T ss_pred CCCcEEEcCCCc---------cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHh
Confidence 356777443322 234555444 488899999998887665542 15788999999987 4431 112335
Q ss_pred hcCCccCeEEEee
Q 012521 190 SSCPTLEELTIEG 202 (461)
Q Consensus 190 ~~cp~Le~L~L~~ 202 (461)
..++.|+.|++.+
T Consensus 97 ~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 97 DKLTQLKELALNT 109 (208)
T ss_dssp TTCTTCCEEECCS
T ss_pred cCccCCCEEEcCC
Confidence 6788899999888
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.25 E-value=1.5e-05 Score=67.64 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=40.2
Q ss_pred CCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 144 CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
.++|++|+|++|.+..++.+ ..+++|++|+|.+ .+.+- -..++..+|.|+.|++.+
T Consensus 41 ~~~L~~L~Ls~N~l~~~~~l-~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRI--GEGLDQALPDLTELILTN 97 (176)
T ss_dssp TTCCSEEECCSSCCCEECCC-CCCSSCCEEECCSSCCCEE--CSCHHHHCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCCccccc-ccCCCCCEEECCCCccccc--CcchhhcCCCCCEEECCC
Confidence 44888888888887666556 6788888888888 44311 113356788888888888
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.21 E-value=5.9e-05 Score=72.98 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=35.2
Q ss_pred ccCCcccC-CCCccEEEeceeeeccCCCCccccCCccEEEeee--ecCChhHHHHHHhcCCccCeEEEee
Q 012521 136 ELPQSILT-CETLVELKLCSDIVIDIPGSGICFPSLKILHFGF--CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 136 ~lp~~l~~-~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~--~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
.++...|. |++|+.+.|.++.+..++..+..+.+|+++.|.. ..++. ..+.+|+.|+.+.+..
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCT
T ss_pred EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCEEecCC
Confidence 34444444 7777777777655544443223356777777754 22222 2356677777777754
No 131
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.19 E-value=0.00048 Score=57.70 Aligned_cols=12 Identities=33% Similarity=0.061 Sum_probs=4.7
Q ss_pred CCCCeeEEEeec
Q 012521 353 SPSLKVLNLDFS 364 (461)
Q Consensus 353 ~p~L~~L~l~~~ 364 (461)
||+|+.|+|..+
T Consensus 138 ~~~L~~L~L~~c 149 (176)
T 3e4g_A 138 FRNLKYLFLSDL 149 (176)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 334444433333
No 132
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.17 E-value=7.5e-05 Score=73.02 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=36.0
Q ss_pred CCCccCCCCChH----HHHHHHcCCCccchhhhcccchhhHHh
Q 012521 11 ARGDITSRLPDH----LLCRILSCLPTEDAVRTCILSSRWRDL 49 (461)
Q Consensus 11 ~~~D~~s~LPd~----vl~~Ils~Lp~~~~~~~s~vsrrWr~l 49 (461)
-..|.++.||+| |+.+||+||+.+++++++.|||+|+++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 457999999999 999999999999999999999999953
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.16 E-value=3.9e-05 Score=67.66 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=52.0
Q ss_pred cCccEEEEEEeecccccccceecccCCcc-cCCCCccEEEeceeeeccC-C-CCccccCCccEEEeee-ecCChhHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSI-LTCETLVELKLCSDIVIDI-P-GSGICFPSLKILHFGF-CHPDRGLMQKF 188 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~~-~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l 188 (461)
.++++|++... ....+|... ..+++|++|+|+++.+..+ + .+ ..+++|++|+|.+ .+.. .-..+
T Consensus 32 ~~l~~L~l~~n---------~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQN---------TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITE--LPKSL 99 (220)
T ss_dssp TTCCEEECCSS---------CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCC--CCTTT
T ss_pred cCCCEEECCCC---------cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCc--cCHhH
Confidence 35677744332 233455433 3488999999998887554 2 44 7789999999988 4431 11234
Q ss_pred HhcCCccCeEEEee
Q 012521 189 FSSCPTLEELTIEG 202 (461)
Q Consensus 189 ~~~cp~Le~L~L~~ 202 (461)
+.+++.|+.|+|.+
T Consensus 100 f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 100 FEGLFSLQLLLLNA 113 (220)
T ss_dssp TTTCTTCCEEECCS
T ss_pred ccCCCCCCEEECCC
Confidence 67789999999988
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.12 E-value=3.8e-05 Score=67.74 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=46.2
Q ss_pred ccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCC
Q 012521 141 ILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPR 207 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~ 207 (461)
+..+++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+.. .....+.+++.|++|+|.+ +..
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~--N~l 117 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRLEN--VQHKMFKGLESLKTLMLRS--NRI 117 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCC--CCGGGGTTCSSCCEEECTT--SCC
T ss_pred hccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCccCc--cCHhHhcCCcCCCEEECCC--CcC
Confidence 345899999999999886654 34 7889999999998 4431 1223467899999999988 543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.06 E-value=0.00029 Score=66.16 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=29.9
Q ss_pred hhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccc-eEEEEeccCCChhhHHHHHhcCCCCeeEEEeec
Q 012521 295 LELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLI-SLELHIDSCFGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 295 l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
+.+|++|+.+++.. + +..+ ....+..+.+|+ .+.+...-. .. -...+.+|++|+.|.+...
T Consensus 246 F~~~~~L~~l~l~~--n-i~~I---~~~aF~~~~~L~~~l~l~~~l~-~I--~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 246 FAQKKYLLKIKLPH--N-LKTI---GQRVFSNCGRLAGTLELPASVT-AI--EFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTCTTCCEEECCT--T-CCEE---CTTTTTTCTTCCEEEEECTTCC-EE--CTTTTTTCTTEEEEEECSS
T ss_pred hhCCCCCCEEECCc--c-ccee---hHHHhhCChhccEEEEEcccce-EE--chhhhhCCccCCEEEeCCC
Confidence 45666777777764 3 2211 122234455565 555543210 00 1123567777777776543
No 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.93 E-value=0.00018 Score=68.63 Aligned_cols=118 Identities=20% Similarity=0.183 Sum_probs=69.3
Q ss_pred ecccCCccc--CCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCC
Q 012521 134 ILELPQSIL--TCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRD 208 (461)
Q Consensus 134 ~~~lp~~l~--~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~ 208 (461)
...++...+ .+++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+. ......+.+++.|+.|+|.+ +...
T Consensus 51 l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~--N~i~ 125 (361)
T 2xot_A 51 LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNHLH--TLDEFLFSDLQALEVLLLYN--NHIV 125 (361)
T ss_dssp CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCS--SCCC
T ss_pred CCccChhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCcCC--cCCHHHhCCCcCCCEEECCC--Cccc
Confidence 344555444 6889999999988876654 34 6789999999998 443 11123467789999999988 5422
Q ss_pred CeeEEEE-EcCCcceEEEEEEeecCcccceeE-EEecCCccEEEEeeccc
Q 012521 209 NVQTINI-IVQTLKRLSISVFVMQGYVSKRIF-EIRTPNLEYLSIIANSL 256 (461)
Q Consensus 209 ~~~~~~i-~~~sL~~L~l~~~~~~~~~~~~~~-~~~~p~L~~L~~~~~~~ 256 (461)
.+..-.+ ..++|+.|.+.++........... ....++|+.|+++++..
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 2211011 126777777776643321000000 02456777777766543
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.92 E-value=0.00011 Score=74.54 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=42.9
Q ss_pred CccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-EcCCcceE
Q 012521 146 TLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IVQTLKRL 223 (461)
Q Consensus 146 ~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~~sL~~L 223 (461)
.|++|+|++|.+..+|.+ ..+++|++|+|.+ .+. .+..-+..++.|+.|+|.+ +...++. .+ ..++|+.|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~-~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~--N~l~~lp--~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHL-EQLLLVTHLDLSHNRLR---ALPPALAALRCLEVLQASD--NALENVD--GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSSCCCG-GGGTTCCEEECCSSCCC---CCCGGGGGCTTCCEEECCS--SCCCCCG--GGTTCSSCCEE
T ss_pred CceEEEecCCCCCCCcCc-cccccCcEeecCccccc---ccchhhhcCCCCCEEECCC--CCCCCCc--ccCCCCCCcEE
Confidence 466777777777666665 6677777777776 332 2222356677777777777 5433332 11 12445555
Q ss_pred EEEEE
Q 012521 224 SISVF 228 (461)
Q Consensus 224 ~l~~~ 228 (461)
.++++
T Consensus 514 ~Ls~N 518 (567)
T 1dce_A 514 LLCNN 518 (567)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55444
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.86 E-value=0.00011 Score=63.17 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=45.0
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCCC---CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIPG---SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~---~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
...+|..++ ++|++|.|.++.+..++. + ..+++|++|+|.+ .+.+. ....+.+++.|+.|+|.+
T Consensus 20 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLF-GRLPHLVKLELKRNQLTGI--EPNAFEGASHIQELQLGE 87 (192)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSG-GGCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCS
T ss_pred cCcCccCCC--CCCCEEECCCCcCCccCCcccc-ccCCCCCEEECCCCCCCCc--CHhHcCCcccCCEEECCC
Confidence 345665443 389999999888866553 4 6789999999988 44321 123366788999999988
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.69 E-value=0.00028 Score=71.41 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=67.8
Q ss_pred cCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhc
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSS 191 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 191 (461)
..++.|++ .+ .....+|. +..+++|++|+|++|.+..+|..-..+++|++|+|.+ .+.+ +. -+..
T Consensus 441 ~~L~~L~L--s~-------n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp-~l~~ 506 (567)
T 1dce_A 441 ADVRVLHL--AH-------KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---VD-GVAN 506 (567)
T ss_dssp TTCSEEEC--TT-------SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC---CG-GGTT
T ss_pred cCceEEEe--cC-------CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC---Cc-ccCC
Confidence 35777744 33 23345676 6779999999999998877664337899999999999 5543 33 4788
Q ss_pred CCccCeEEEeeeecCCCCee-EEEE-EcCCcceEEEEEEe
Q 012521 192 CPTLEELTIEGILHPRDNVQ-TINI-IVQTLKRLSISVFV 229 (461)
Q Consensus 192 cp~Le~L~L~~~~c~~~~~~-~~~i-~~~sL~~L~l~~~~ 229 (461)
++.|+.|+|.+ |...++. .-.+ ..++|+.|.+.++.
T Consensus 507 l~~L~~L~Ls~--N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 507 LPRLQELLLCN--NRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CSSCCEEECCS--SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCcEEECCC--CCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 99999999998 6544431 1111 12556666665543
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.68 E-value=0.00037 Score=59.88 Aligned_cols=12 Identities=42% Similarity=0.324 Sum_probs=8.6
Q ss_pred cCCccEEEEeec
Q 012521 243 TPNLEYLSIIAN 254 (461)
Q Consensus 243 ~p~L~~L~~~~~ 254 (461)
.++|+.|++.++
T Consensus 125 l~~L~~L~L~~N 136 (193)
T 2wfh_A 125 LSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSS
T ss_pred CccccEEEeCCC
Confidence 467788877765
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.62 E-value=0.00017 Score=62.07 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=64.0
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT 212 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~ 212 (461)
...+|..++ ++|++|.|.++.+..+|..-..+++|++|+|.+ .+..- ....+.+++.|+.|+|.+ +...++..
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~Ls~--N~l~~i~~ 95 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL--SNQSFSNMTQLLTLILSY--NRLRCIPP 95 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCS--SCCCBCCT
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe--CHhHccCCCCCCEEECCC--CccCEeCH
Confidence 344554432 578888888877766553226778888888887 33311 112356678888888877 43222110
Q ss_pred EEEEcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCce---EeecCCCeeEEEEEEEEc
Q 012521 213 INIIVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYF---VLDEIPFLKKAFVLVEFN 277 (461)
Q Consensus 213 ~~i~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~l~~~~~ 277 (461)
......++|++|+++++....+ .+..+++|+.+++...+.
T Consensus 96 -------------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 96 -------------------------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp -------------------------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred -------------------------HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 0001235666666665543322 245678888877766544
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.61 E-value=0.0005 Score=58.06 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=45.1
Q ss_pred CCccEEEeceeeeccCCCC-ccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEE-EcCCcc
Q 012521 145 ETLVELKLCSDIVIDIPGS-GICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINI-IVQTLK 221 (461)
Q Consensus 145 ~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i-~~~sL~ 221 (461)
++|++|+|.++.+..++.. ...+++|++|+|.+ .+.. .....+..++.|+.|++.+ +...++..-.. ..++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~--N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHE--NKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCC--CCccccCHHHhhCCcccC
Confidence 3555555555554433321 03455555555555 2221 1112234455555555555 32222111000 124555
Q ss_pred eEEEEEEeecCcccceeEEEecCCccEEEEeecc
Q 012521 222 RLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANS 255 (461)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~ 255 (461)
.|.+.++...... .......++|++|+++++.
T Consensus 104 ~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 104 ELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCSSCCSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCcceEeC--HHHhcCCcccCEEEecCCC
Confidence 5555544322100 1011224778888887663
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.60 E-value=0.00024 Score=60.04 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=15.4
Q ss_pred CCCccEEEeceeeeccCCCC-ccccCCccEEEeee
Q 012521 144 CETLVELKLCSDIVIDIPGS-GICFPSLKILHFGF 177 (461)
Q Consensus 144 ~~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~L~~ 177 (461)
+++|++|+|+++.+..++.. ...+++|++|+|.+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555555444433321 03445555555544
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.25 E-value=0.0021 Score=55.33 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=71.9
Q ss_pred hcCccEEEEEEeecccccccceecccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHh
Q 012521 112 QRNVRHLFLDVYSTSNFTRHKRILELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFS 190 (461)
Q Consensus 112 ~~~l~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~ 190 (461)
-.++++|++.... ...+| .+..+++|++|+|++|.+..++.....+++|++|+|.+ .+.+ +. -+.
T Consensus 47 l~~L~~L~ls~n~---------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~---l~-~~~ 112 (198)
T 1ds9_A 47 LKACKHLALSTNN---------IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS---LS-GIE 112 (198)
T ss_dssp TTTCSEEECSEEE---------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC---HH-HHH
T ss_pred CCCCCEEECCCCC---------Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc---CC-ccc
Confidence 3588888665443 33466 55668999999999998887665435678999999999 5543 33 266
Q ss_pred cCCccCeEEEeeeecCCCCeeEE-EE-EcCCcceEEEEEEee
Q 012521 191 SCPTLEELTIEGILHPRDNVQTI-NI-IVQTLKRLSISVFVM 230 (461)
Q Consensus 191 ~cp~Le~L~L~~~~c~~~~~~~~-~i-~~~sL~~L~l~~~~~ 230 (461)
.++.|+.|++.+ |...++..+ .+ ..++|+.|.+.++..
T Consensus 113 ~l~~L~~L~l~~--N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 113 KLVNLRVLYMSN--NKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHSSEEEESE--EECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCCCCEEECCC--CcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 789999999998 654443221 11 247899999987753
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.14 E-value=0.0012 Score=55.65 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=43.3
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
...+|..+. ++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+..- -..++..++.|+.|+|.+
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~i--~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVF-DHLVNLQQLYFNSNKLTAI--PTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCS
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHh-cCCcCCCEEECCCCCCCcc--ChhHhCCcchhhEEECCC
Confidence 445665543 77888888888876653 23 6788888888888 44311 112356778888888887
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.04 E-value=0.0012 Score=55.28 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=42.7
Q ss_pred ecccCCcccCCCCccEEEeceeeeccCC--CCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 134 ILELPQSILTCETLVELKLCSDIVIDIP--GSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
...+|..+. ++|++|+|+++.+..++ .+ ..+++|++|+|.+ .+.. .-...+.+++.|+.|+|.+
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCS
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhh-cCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCC
Confidence 345565443 67888888888876653 24 6788888888888 4431 1123356778888888887
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.02 E-value=0.0011 Score=56.86 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred CccEEEEEEeecccccccceecccCCc--ccCCCCccEEEeceeeeccC-C-CCccccCCccEEEeee-ecCChhHHHHH
Q 012521 114 NVRHLFLDVYSTSNFTRHKRILELPQS--ILTCETLVELKLCSDIVIDI-P-GSGICFPSLKILHFGF-CHPDRGLMQKF 188 (461)
Q Consensus 114 ~l~~L~l~~~~~~~~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~l~~~-~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l 188 (461)
.+++|++... ....++.. +..+++|++|+|+++.+..+ + .+ ..+++|++|+|.+ .+. . .....
T Consensus 30 ~l~~L~l~~n---------~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~-~-~~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDN---------ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIK-E-ISNKM 97 (192)
T ss_dssp TCSEEECCSC---------CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCC-E-ECSSS
T ss_pred CCCEEECCCC---------cCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCC-c-cCHHH
Confidence 6777744332 23344442 44589999999999988665 3 34 6889999999998 443 1 11223
Q ss_pred HhcCCccCeEEEee
Q 012521 189 FSSCPTLEELTIEG 202 (461)
Q Consensus 189 ~~~cp~Le~L~L~~ 202 (461)
+.+.+.|+.|+|.+
T Consensus 98 ~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 98 FLGLHQLKTLNLYD 111 (192)
T ss_dssp STTCTTCCEEECCS
T ss_pred hcCCCCCCEEECCC
Confidence 56789999999988
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.86 E-value=0.0014 Score=61.75 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=53.6
Q ss_pred ecccCCcccCCCCccEEEece-eeeccCCC--CccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCC
Q 012521 134 ILELPQSILTCETLVELKLCS-DIVIDIPG--SGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDN 209 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~-~~l~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~ 209 (461)
...+|. +..+++|++|+|++ +.+..++. + ..+++|+.|+|.+ .+. ......+.+++.|+.|+|.+ +...+
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~--N~l~~ 94 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSF--NALES 94 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECCS--SCCSC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCccc--eeCHHHhcCCcCCCEEeCCC--Cccce
Confidence 445676 66677888888875 77655442 4 5678888888887 433 11123466778888888877 54333
Q ss_pred eeEEEEEcCCcceEEEEEEe
Q 012521 210 VQTINIIVQTLKRLSISVFV 229 (461)
Q Consensus 210 ~~~~~i~~~sL~~L~l~~~~ 229 (461)
+..-.....+|+.|.+.++.
T Consensus 95 ~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSTTTCSCCCCEEECCSSC
T ss_pred eCHHHcccCCceEEEeeCCC
Confidence 22111112236677666543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.81 E-value=0.0027 Score=60.62 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=58.1
Q ss_pred CCcceEEEEEEeecCccc--c-eeEEEecCCccEEEEeecccCce----EeecCCCeeEEEEEEEEceeecCCCCcchhh
Q 012521 218 QTLKRLSISVFVMQGYVS--K-RIFEIRTPNLEYLSIIANSLAYF----VLDEIPFLKKAFVLVEFNVLRRNSSGIFEND 290 (461)
Q Consensus 218 ~sL~~L~l~~~~~~~~~~--~-~~~~~~~p~L~~L~~~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~ 290 (461)
++|+.|.+.+|....... . ..+....++|++|+++++..... ....+++|+.++++.+..... ....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~------~~~~ 145 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE------ACKD 145 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH------HHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH------HHHH
Confidence 567777777665321000 0 00111225777777776543211 111233455444433321110 0012
Q ss_pred HHHHh-hcCCCceEEEEecCCChHHHhhh-hccCCCCCCCccceEEEEeccCC--ChhhHHHHHhcCCCCeeEEEeecc
Q 012521 291 ARSAL-ELVKRIKSMKILSLPDSMTVLSF-VLNNNLPTFSNLISLELHIDSCF--GWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 291 ~~~~l-~~~~~l~~L~l~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
+...+ ...++|++|+|+. +.+..... .....+...++|++|+|+.+... ....+...++.+++|+.|+++.+.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSN--NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHSTTCCCCEEECCS--SCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHhcCCccceeeCCC--CCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 22222 2345566666665 43322110 11111223445666665555321 122234445555666666666553
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.80 E-value=0.00082 Score=70.24 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=46.5
Q ss_pred cccCCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEE
Q 012521 135 LELPQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTI 213 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~ 213 (461)
..+|..++.+++|++|+|++|.+..+|..-..+++|++|+|.+ .+. .+..-+.+++.|+.|+|.+ |....+...
T Consensus 237 ~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~L~~--N~l~~lp~~ 311 (727)
T 4b8c_D 237 FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT---SLPAELGSCFQLKYFYFFD--NMVTTLPWE 311 (727)
T ss_dssp SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS---SCCSSGGGGTTCSEEECCS--SCCCCCCSS
T ss_pred CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC---ccChhhcCCCCCCEEECCC--CCCCccChh
Confidence 3556566666666666666666654443215566666666666 322 1222245566666666666 432222111
Q ss_pred EEEcCCcceEEEEEEe
Q 012521 214 NIIVQTLKRLSISVFV 229 (461)
Q Consensus 214 ~i~~~sL~~L~l~~~~ 229 (461)
--..++|+.|.+.++.
T Consensus 312 ~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTSCTTCCCEECTTSC
T ss_pred hhcCCCccEEeCCCCc
Confidence 0012556666665554
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.70 E-value=0.0069 Score=50.81 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=55.3
Q ss_pred cCccEEEEEEeecccccccceecccCC-cccCCCCccEEEeceeeeccCCCCc-cccCCccEEEeee-ecCChhHHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQ-SILTCETLVELKLCSDIVIDIPGSG-ICFPSLKILHFGF-CHPDRGLMQKFF 189 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~L~~L~L~~-~~~~~~~l~~l~ 189 (461)
.+++.|++... ....+++ .+..+++|++|+|+++.+..++... ..+++|++|+|.+ .+..- ....+
T Consensus 33 ~~L~~L~Ls~N---------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~ 101 (174)
T 2r9u_A 33 TDKQRLWLNNN---------QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI--PRGAF 101 (174)
T ss_dssp TTCSEEECCSS---------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTT
T ss_pred CCCcEEEeCCC---------CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee--CHHHh
Confidence 56788844333 2345544 3445899999999999987766421 6789999999998 44311 12346
Q ss_pred hcCCccCeEEEee
Q 012521 190 SSCPTLEELTIEG 202 (461)
Q Consensus 190 ~~cp~Le~L~L~~ 202 (461)
..++.|+.|+|.+
T Consensus 102 ~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 102 DNLKSLTHIYLYN 114 (174)
T ss_dssp TTCTTCSEEECCS
T ss_pred ccccCCCEEEeCC
Confidence 7789999999987
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.61 E-value=0.00063 Score=71.13 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=71.5
Q ss_pred CCcccCCCCccEEEeceeeeccCCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeEEEEE
Q 012521 138 PQSILTCETLVELKLCSDIVIDIPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQTINII 216 (461)
Q Consensus 138 p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~~~i~ 216 (461)
|..+..+++|++|+|++|.+..++.....+++|++|+|.+ .+. .+..-+..++.|+.|+|.+ |....+...--.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~--N~l~~lp~~~~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSH--NRLTSLPAELGS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS---CCCGGGGGGTTCCEEECTT--SCCSSCCSSGGG
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc---ccChhhhCCCCCCEEeCcC--CcCCccChhhcC
Confidence 4445558999999999998877664326899999999998 443 2233367899999999999 654333111112
Q ss_pred cCCcceEEEEEEeecCcccceeEEEecCCccEEEEeeccc
Q 012521 217 VQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSL 256 (461)
Q Consensus 217 ~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~ 256 (461)
.++|+.|.+.++..... ....-..++|+.|+++++..
T Consensus 292 l~~L~~L~L~~N~l~~l---p~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTL---PWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GTTCSEEECCSSCCCCC---CSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCEEECCCCCCCcc---ChhhhcCCCccEEeCCCCcc
Confidence 37888888887754311 11122457888888877543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.58 E-value=0.0082 Score=50.13 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=53.8
Q ss_pred cCccEEEEEEeecccccccceecccCCc-ccCCCCccEEEeceeeeccCCCCc-cccCCccEEEeee-ecCChhHHHHHH
Q 012521 113 RNVRHLFLDVYSTSNFTRHKRILELPQS-ILTCETLVELKLCSDIVIDIPGSG-ICFPSLKILHFGF-CHPDRGLMQKFF 189 (461)
Q Consensus 113 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~L~~L~L~~-~~~~~~~l~~l~ 189 (461)
..++.|++... ....+++. +..+++|++|+|+++.+..++... ..+++|++|+|.+ .+..- ....+
T Consensus 30 ~~l~~L~L~~N---------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~--~~~~~ 98 (170)
T 3g39_A 30 TTTQVLYLYDN---------QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI--PRGAF 98 (170)
T ss_dssp TTCSEEECCSS---------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTT
T ss_pred CCCcEEEcCCC---------cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe--CHHHh
Confidence 46777744332 33445443 445899999999999887766421 6789999999998 44311 12346
Q ss_pred hcCCccCeEEEee
Q 012521 190 SSCPTLEELTIEG 202 (461)
Q Consensus 190 ~~cp~Le~L~L~~ 202 (461)
..++.|+.|+|.+
T Consensus 99 ~~l~~L~~L~L~~ 111 (170)
T 3g39_A 99 DNLKSLTHIWLLN 111 (170)
T ss_dssp TTCTTCCEEECCS
T ss_pred cCCCCCCEEEeCC
Confidence 7789999999987
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.58 E-value=0.009 Score=50.69 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=37.7
Q ss_pred HHHhhcCCCceEEEEecCCChHHHhh-hhccCCCCCCCccceEEE--EeccC--CChhhHHHHHhcCCCCeeEEEeecc
Q 012521 292 RSALELVKRIKSMKILSLPDSMTVLS-FVLNNNLPTFSNLISLEL--HIDSC--FGWKLLTPFLKRSPSLKVLNLDFSK 365 (461)
Q Consensus 292 ~~~l~~~~~l~~L~l~~~~~~~~~l~-~~~~~~~~~~~~L~~L~l--~~~~~--~~~~~l~~ll~~~p~L~~L~l~~~~ 365 (461)
...+...+++++|+|+. +.+..-. ......+....+|++|+| ..+.. .....+...++.++.|+.|+++.+.
T Consensus 86 ~~~L~~n~~L~~L~L~~--N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 86 AEMLKVNNTLKSLNVES--NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHCSSCCEEECCS--SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCcCEEECcC--CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 33344445566666655 3332211 011222333445666666 33322 1233466778888899999988765
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.49 E-value=0.0014 Score=61.51 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=69.8
Q ss_pred cCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccC---ceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHH
Q 012521 217 VQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLA---YFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARS 293 (461)
Q Consensus 217 ~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 293 (461)
..++..+.+.+..... ....+.-.+++|+++++.++... ...+.++.+|+++.+...... . -..
T Consensus 201 ~~~~~~l~~~~~l~~~--~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~--I---------~~~ 267 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNA--DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT--I---------GQR 267 (329)
T ss_dssp GGGCSEEEEEECCCHH--HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCE--E---------CTT
T ss_pred ccccceEEEeeeecHH--HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccce--e---------hHH
Confidence 4667777776542110 01111123688888888764332 234667888888766442111 0 112
Q ss_pred HhhcCCCce-EEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCCCCeeEEE
Q 012521 294 ALELVKRIK-SMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSPSLKVLNL 361 (461)
Q Consensus 294 ~l~~~~~l~-~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l 361 (461)
.+.+|++|+ .+.+.. . +..+ ....+..+.+|+.|++..+..... -...+.+|++|+++..
T Consensus 268 aF~~~~~L~~~l~l~~--~-l~~I---~~~aF~~c~~L~~l~l~~n~i~~I--~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA--S-VTAI---EFGAFMGCDNLRYVLATGDKITTL--GDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCEEEEECT--T-CCEE---CTTTTTTCTTEEEEEECSSCCCEE--CTTTTCTTCCCCEEEC
T ss_pred HhhCChhccEEEEEcc--c-ceEE---chhhhhCCccCCEEEeCCCccCcc--chhhhcCCcchhhhcc
Confidence 367888998 999985 2 2211 223445677888887754422111 1224688999999864
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.82 E-value=0.0075 Score=51.18 Aligned_cols=131 Identities=13% Similarity=0.086 Sum_probs=80.4
Q ss_pred hhHHHHhhcCCCceEEEEecCCC-hHHHhh-hhccCCCCCCCccceEEEEeccC--CChhhHHHHHhcCCCCeeEEEeec
Q 012521 289 NDARSALELVKRIKSMKILSLPD-SMTVLS-FVLNNNLPTFSNLISLELHIDSC--FGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 289 ~~~~~~l~~~~~l~~L~l~~~~~-~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
..+...+...+++++|+|+. + .+..-. ......+....+|++|+|..+.. .....+...++..++|++|+|+.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~--n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTT--CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCCCEEEecC--CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 56777888899999999998 5 433211 11122334466899999988754 223446777888999999999987
Q ss_pred cccccCCCCCCcccccccccccCCccccccccceEEEEE--EeeccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 365 KAHKLTPNTLQDIVFEDLVCVEPECAPNCLSSCVEVIEI--TNLKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~i--~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
.- ++..... +... .. ...+|+++.+ .+..-.......+.-.++..+.|+++.+..+.
T Consensus 104 ~i---~~~g~~~--------l~~~-L~--~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FI---SGSGILA--------LVEA-LQ--SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CC---CHHHHHH--------HHHG-GG--GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cC---CHHHHHH--------HHHH-HH--hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 62 1100000 1110 11 1246999998 43332233344444556777899999998776
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.28 E-value=0.022 Score=51.21 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=39.6
Q ss_pred cCCcccCCCCccEEEeceeeeccCCCCccccC--CccEEEeee-ecCC----h-hHHHHHHhcCCccCeEEE
Q 012521 137 LPQSILTCETLVELKLCSDIVIDIPGSGICFP--SLKILHFGF-CHPD----R-GLMQKFFSSCPTLEELTI 200 (461)
Q Consensus 137 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~--~L~~L~L~~-~~~~----~-~~l~~l~~~cp~Le~L~L 200 (461)
+|..+..+++|++|+|+++.+..+... ..+. +|++|+|.+ .+.+ . .....++..+|.|+.|+=
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSEREL-DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSGGGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred chhHHhhCCCCCEEECCCCccCCchhh-hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 344444578888888888877664433 3344 788888877 4331 1 233466777888877753
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.11 E-value=0.014 Score=56.12 Aligned_cols=182 Identities=11% Similarity=0.119 Sum_probs=94.7
Q ss_pred eecccCCcccCCCCccEEEeceeeeccC--CCCccccCCccEEEeee--ecCChhHHHHHHhcCCccCeEEEeeeecCCC
Q 012521 133 RILELPQSILTCETLVELKLCSDIVIDI--PGSGICFPSLKILHFGF--CHPDRGLMQKFFSSCPTLEELTIEGILHPRD 208 (461)
Q Consensus 133 ~~~~lp~~l~~~~~L~~L~L~~~~l~~~--~~~~~~~~~L~~L~L~~--~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~ 208 (461)
....+|...|.|.+|+++.|... +..+ ..| .+|++|+++.|.. ..++..++ .+ ..|+.+.+..
T Consensus 191 ~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF-~~~~~L~~l~l~~~l~~I~~~aF----~~-~~L~~i~lp~------ 257 (401)
T 4fdw_A 191 KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAF-LKTSQLKTIEIPENVSTIGQEAF----RE-SGITTVKLPN------ 257 (401)
T ss_dssp CCSEECTTTTTTCCCSEEECCTT-CCEECTTTT-TTCTTCCCEECCTTCCEECTTTT----TT-CCCSEEEEET------
T ss_pred cceEechhhEeecccCEEEeCCc-hheehhhHh-hCCCCCCEEecCCCccCcccccc----cc-CCccEEEeCC------
Confidence 35567778888999999999743 2222 345 6889999999976 33333333 33 4688888855
Q ss_pred CeeEEEE----EcCCcceEEEEEEeecCcccceeEEEecCCccEEEEeecccCceEeecCCCeeEEEEEEEEceeecCCC
Q 012521 209 NVQTINI----IVQTLKRLSISVFVMQGYVSKRIFEIRTPNLEYLSIIANSLAYFVLDEIPFLKKAFVLVEFNVLRRNSS 284 (461)
Q Consensus 209 ~~~~~~i----~~~sL~~L~l~~~~~~~~~~~~~~~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~ 284 (461)
.+..+.- .|++|+.+.+.+..... ..++ ......+.++++|+.+.+... ....
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~-----------~~~~-------~I~~~aF~~c~~L~~l~l~~~--i~~I--- 314 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFND-----------DPEA-------MIHPYCLEGCPKLARFEIPES--IRIL--- 314 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCC-----------CTTC-------EECTTTTTTCTTCCEECCCTT--CCEE---
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccC-----------Cccc-------EECHHHhhCCccCCeEEeCCc--eEEE---
Confidence 1222211 23455555553321100 0000 011123345555555444311 0000
Q ss_pred CcchhhHHHHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCChhhHHHHHhcCC-CCeeEEEee
Q 012521 285 GIFENDARSALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFGWKLLTPFLKRSP-SLKVLNLDF 363 (461)
Q Consensus 285 ~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p-~L~~L~l~~ 363 (461)
-...+.+|++|+.+.|.. . +..+ ....+..+ +|+.+.+..+..... ....+.++| ++++|.+..
T Consensus 315 ------~~~aF~~c~~L~~l~lp~--~-l~~I---~~~aF~~~-~L~~l~l~~n~~~~l--~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 315 ------GQGLLGGNRKVTQLTIPA--N-VTQI---NFSAFNNT-GIKEVKVEGTTPPQV--FEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ------CTTTTTTCCSCCEEEECT--T-CCEE---CTTSSSSS-CCCEEEECCSSCCBC--CCSSCCCSCTTCCEEEECG
T ss_pred ------hhhhhcCCCCccEEEECc--c-ccEE---cHHhCCCC-CCCEEEEcCCCCccc--ccccccCCCCCccEEEeCH
Confidence 011356788899998864 2 2211 22334556 788888776632111 112345565 788888876
Q ss_pred cc
Q 012521 364 SK 365 (461)
Q Consensus 364 ~~ 365 (461)
..
T Consensus 380 ~~ 381 (401)
T 4fdw_A 380 ES 381 (401)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.57 E-value=0.071 Score=47.87 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=42.1
Q ss_pred HHhhcCCCceEEEEecCCChHHHhhhhccCCCCCCCccceEEEEeccCCC-----hhhHHHHHhcCCCCeeEEE
Q 012521 293 SALELVKRIKSMKILSLPDSMTVLSFVLNNNLPTFSNLISLELHIDSCFG-----WKLLTPFLKRSPSLKVLNL 361 (461)
Q Consensus 293 ~~l~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~ll~~~p~L~~L~l 361 (461)
.++..+++|+.|+|+. +.+..+.. ...+..+ +|++|.|..+.... ......++..+|+|+.|+=
T Consensus 190 ~~~~~l~~L~~L~Ls~--N~i~~~~~--l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSG--NELKSERE--LDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp THHHHSTTCCEEECTT--SCCCSGGG--GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hHHhhCCCCCEEECCC--CccCCchh--hhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3567889999999998 76654411 1222333 78888888774311 2334567889999998853
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.40 E-value=0.087 Score=49.33 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=36.6
Q ss_pred cccCCc-ccCCCCccEEEeceeeeccCCCC-ccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEee
Q 012521 135 LELPQS-ILTCETLVELKLCSDIVIDIPGS-GICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 135 ~~lp~~-l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
..+|+. +..+++|++|+|+++.+..++.. -..+++|+.|+|.+ .+..- -..++...+ |+.|.|.+
T Consensus 45 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 45 QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL--SWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC--CSTTTCSCC-CCEEECCS
T ss_pred CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee--CHHHcccCC-ceEEEeeC
Confidence 344433 33477788888887777554421 15677788888877 43311 011223333 77777765
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.79 E-value=0.53 Score=44.81 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=21.8
Q ss_pred cCCccEEEEeec--ccCceEeecCCCeeEEEEEEEEceeecCCCCcchhhHHHHhhcCCCceEEEEec
Q 012521 243 TPNLEYLSIIAN--SLAYFVLDEIPFLKKAFVLVEFNVLRRNSSGIFENDARSALELVKRIKSMKILS 308 (461)
Q Consensus 243 ~p~L~~L~~~~~--~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~ 308 (461)
|.+|+++.+-.. ......+.+|.+|+.+.+.... ....-+..+.+|+.+.+..
T Consensus 333 C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~-------------~~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR-------------SQWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH-------------HHHHTCBCCCCC-------
T ss_pred CCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce-------------eehhhhhccCCCCEEEeCC
Confidence 455555555322 1112345667777776543321 1112345567788887765
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.54 E-value=3.5 Score=39.02 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=44.3
Q ss_pred ccCCcccC-CCCccEEEeceee--eccCCCCccccCCccEEEeee--ecCChhHHHHHHhcCCccCeEEEeeeecCCCCe
Q 012521 136 ELPQSILT-CETLVELKLCSDI--VIDIPGSGICFPSLKILHFGF--CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNV 210 (461)
Q Consensus 136 ~lp~~l~~-~~~L~~L~L~~~~--l~~~~~~~~~~~~L~~L~L~~--~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~ 210 (461)
.+....|. |++|+.+.+.... +.. ..| .+|.+|+++.|.. ..+++. .+.+|..|+++.|-. . +
T Consensus 278 ~I~~~aF~~c~~L~~i~l~~~i~~I~~-~aF-~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~--s----v 345 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFSSRITELPE-SVF-AGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPS--S----V 345 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTCCEECT-TTT-TTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECT--T----C
T ss_pred eecCcccccccccccccCCCcccccCc-eee-cCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECc--c----c
Confidence 34444444 7788887775321 111 234 5677888887754 222222 366788888887754 1 2
Q ss_pred eEEE----EEcCCcceEEEEE
Q 012521 211 QTIN----IIVQTLKRLSISV 227 (461)
Q Consensus 211 ~~~~----i~~~sL~~L~l~~ 227 (461)
..+. ..|.+|+.+.+.+
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESS
T ss_pred CEEhHhHhhCCCCCCEEEECC
Confidence 2221 1346777777654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=74.01 E-value=1.4 Score=41.75 Aligned_cols=122 Identities=19% Similarity=0.204 Sum_probs=59.5
Q ss_pred ccCCcccC-CCCccEEEeceeeecc-CCCCccccCCccEEEeee-ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE
Q 012521 136 ELPQSILT-CETLVELKLCSDIVID-IPGSGICFPSLKILHFGF-CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT 212 (461)
Q Consensus 136 ~lp~~l~~-~~~L~~L~L~~~~l~~-~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~ 212 (461)
.+....|. |..|+.+.+......- ...+ ..+..|+.+.+.. ... + ..+.+|..|+++.+.. ++..
T Consensus 243 ~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F-~~~~~l~~~~~~~~~i~-~----~~F~~~~~L~~i~l~~------~i~~ 310 (394)
T 4fs7_A 243 ELGKSVFYGCTDLESISIQNNKLRIGGSLF-YNCSGLKKVIYGSVIVP-E----KTFYGCSSLTEVKLLD------SVKF 310 (394)
T ss_dssp EECSSTTTTCSSCCEEEECCTTCEECSCTT-TTCTTCCEEEECSSEEC-T----TTTTTCTTCCEEEECT------TCCE
T ss_pred ecccccccccccceeEEcCCCcceeecccc-ccccccceeccCceeec-c----cccccccccccccccc------ccce
Confidence 33333443 7778877776432211 1233 5566777766655 222 2 1256677777777654 1222
Q ss_pred EEE----EcCCcceEEEEEEe-ecCcccceeEEEecCCccEEEEeecc--cCceEeecCCCeeEEEEE
Q 012521 213 INI----IVQTLKRLSISVFV-MQGYVSKRIFEIRTPNLEYLSIIANS--LAYFVLDEIPFLKKAFVL 273 (461)
Q Consensus 213 ~~i----~~~sL~~L~l~~~~-~~~~~~~~~~~~~~p~L~~L~~~~~~--~~~~~~~~~~~L~~~~l~ 273 (461)
+.- .+.+|+++.+.... ..+ ......+.+|+++.+.... .....+.+|++|+++.+.
T Consensus 311 I~~~aF~~c~~L~~i~lp~~v~~I~----~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYLVEEIG----KRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTTCCEEC----TTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred echhhhcCCCCCCEEEeCCcccEEh----HHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEEC
Confidence 211 13555555542110 000 1111235667777664321 112346678888877664
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=69.64 E-value=2.7 Score=39.42 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=36.5
Q ss_pred cccCCcccC-CCCccEEEeceeee-ccCCCCccccCCccEEEeee-ec--CChhHHHHHHhcCCccCeEEEee
Q 012521 135 LELPQSILT-CETLVELKLCSDIV-IDIPGSGICFPSLKILHFGF-CH--PDRGLMQKFFSSCPTLEELTIEG 202 (461)
Q Consensus 135 ~~lp~~l~~-~~~L~~L~L~~~~l-~~~~~~~~~~~~L~~L~L~~-~~--~~~~~l~~l~~~cp~Le~L~L~~ 202 (461)
..+....|. |.+|+.+.+..... -....+ .+|.+|+++.+.+ .. +++ ..+.+|+.|+++.|..
T Consensus 252 ~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 252 TSIGSFLLQNCTALKTLNFYAKVKTVPYLLC-SGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CEECTTTTTTCTTCCEEEECCCCSEECTTTT-TTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCT
T ss_pred cEeCccccceeehhccccccccceecccccc-ccccccccccccccccceehh----hhhcCCCCCCEEEcCc
Confidence 344444444 77888887754311 111234 6678888888864 22 222 2366788888887754
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=68.49 E-value=2.4 Score=35.81 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=79.6
Q ss_pred hhHHHHhhcCCCceEEEEecCCC-hHHHhh-hhccCCCCCCCccceEEEEeccC--CChhhHHHHHhcCCCCeeEEEeec
Q 012521 289 NDARSALELVKRIKSMKILSLPD-SMTVLS-FVLNNNLPTFSNLISLELHIDSC--FGWKLLTPFLKRSPSLKVLNLDFS 364 (461)
Q Consensus 289 ~~~~~~l~~~~~l~~L~l~~~~~-~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L~l~~~ 364 (461)
..+..++..-+.|++|.|+. . .+..-. ....+.+..-..|++|+|..+.. .....+...|+.-..|++|.|+.+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~--nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINN--MKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTT--CCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCccEEECCC--CCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 56777777778999999986 3 222110 11122223345788899988753 245568888999999999999998
Q ss_pred cccccCCCCCCcccccccccccCCcccccc--ccceEEEEEEe----eccchhHHHHHHHHHhcCcccceEEEEecC
Q 012521 365 KAHKLTPNTLQDIVFEDLVCVEPECAPNCL--SSCVEVIEITN----LKREDYELEMVRYLLENSKVLEKFSVGFAE 435 (461)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~v~i~~----~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 435 (461)
.- ++..... +-+.+ -+.|+++.+.+ .-|...+..+++.+ +.-+.|+++.+.+..
T Consensus 109 ~I---g~~Ga~a-------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 FL---TPELLAR-------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFAS 168 (197)
T ss_dssp BC---CHHHHHH-------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCC
T ss_pred cC---CHHHHHH-------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCC
Confidence 62 1100000 11111 23588888864 33555556677766 445779999887665
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=65.06 E-value=4.9 Score=37.96 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=48.4
Q ss_pred cCCcccC-CCCccEEEecee-eeccCCCCccccCCccEEEeee--ecCChhHHHHHHhcCCccCeEEEeeeecCCCCeeE
Q 012521 137 LPQSILT-CETLVELKLCSD-IVIDIPGSGICFPSLKILHFGF--CHPDRGLMQKFFSSCPTLEELTIEGILHPRDNVQT 212 (461)
Q Consensus 137 lp~~l~~-~~~L~~L~L~~~-~l~~~~~~~~~~~~L~~L~L~~--~~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~~~ 212 (461)
++...|. |.+|+.+.+... ..-....| .+|.+|+++.|.. ..+++. .+.+|..|+++.+.. ++..
T Consensus 288 i~~~~F~~~~~L~~i~l~~~i~~I~~~aF-~~c~~L~~i~lp~~v~~I~~~----aF~~c~~L~~i~lp~------~l~~ 356 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDSVKFIGEEAF-ESCTSLVSIDLPYLVEEIGKR----SFRGCTSLSNINFPL------SLRK 356 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTTCCEECTTTT-TTCTTCCEECCCTTCCEECTT----TTTTCTTCCEECCCT------TCCE
T ss_pred eccccccccccccccccccccceechhhh-cCCCCCCEEEeCCcccEEhHH----hccCCCCCCEEEECc------cccE
Confidence 4444444 889998888643 11111344 6788899998865 222232 367899999888865 1333
Q ss_pred EEE----EcCCcceEEEE
Q 012521 213 INI----IVQTLKRLSIS 226 (461)
Q Consensus 213 ~~i----~~~sL~~L~l~ 226 (461)
+.- .|++|+.+.+.
T Consensus 357 I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTTTBTTCTTCCEEEEE
T ss_pred ehHHHhhCCCCCCEEEEC
Confidence 321 35788888774
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=64.20 E-value=1.7 Score=36.71 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=52.7
Q ss_pred cccHHHHHHHHHhc--CccEEEEEEeeccccccc-ceecccCCcccCCCCccEEEeceeeeccC--CCCc---cccCCcc
Q 012521 100 FSRVSEWICFAIQR--NVRHLFLDVYSTSNFTRH-KRILELPQSILTCETLVELKLCSDIVIDI--PGSG---ICFPSLK 171 (461)
Q Consensus 100 ~~~~~~wl~~~~~~--~l~~L~l~~~~~~~~~~~-~~~~~lp~~l~~~~~L~~L~L~~~~l~~~--~~~~---~~~~~L~ 171 (461)
...++.++..+... .+++|.|...+ ..+ .+...+-..+..-.+|++|+|++|.+.+. ..++ ..-..|+
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn----~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~ 101 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNINNMK----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLR 101 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEECTTCC----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHhcCCCccEEECCCCC----CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccC
Confidence 44566777766553 56777443211 000 01112222233356788888888877541 1111 2346788
Q ss_pred EEEeeeecCChhHHHHHH---hcCCccCeEEEee
Q 012521 172 ILHFGFCHPDRGLMQKFF---SSCPTLEELTIEG 202 (461)
Q Consensus 172 ~L~L~~~~~~~~~l~~l~---~~cp~Le~L~L~~ 202 (461)
+|+|.+..+++.+...+. .....|++|.|.+
T Consensus 102 ~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 102 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred eEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 888888555566554443 3455677777765
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=62.99 E-value=5.5 Score=30.97 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=31.3
Q ss_pred ccCCcccCCCCccEEEeceeeeccCCCC-ccccCCccEEEeee-ecC
Q 012521 136 ELPQSILTCETLVELKLCSDIVIDIPGS-GICFPSLKILHFGF-CHP 180 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~L~~-~~~ 180 (461)
.+|..+ -++|++|+|+++.+..++.. ...+++|++|+|.+ .+.
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 455432 24699999999998776642 26788999999998 554
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=29.12 E-value=62 Score=29.82 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=50.9
Q ss_pred cccCCccc-CCCCccEEEeceeee-ccCCCCccccCCccEEEeeee--cCChhHHHHHHhcCCccCeEEEeeeecCCCCe
Q 012521 135 LELPQSIL-TCETLVELKLCSDIV-IDIPGSGICFPSLKILHFGFC--HPDRGLMQKFFSSCPTLEELTIEGILHPRDNV 210 (461)
Q Consensus 135 ~~lp~~l~-~~~~L~~L~L~~~~l-~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~L~~~~c~~~~~ 210 (461)
..++...| .|.+|+.+.+-.... -....+ ..+.+|+.+.+... .++. ..+.+|+.|+++.+.. + ++
T Consensus 229 ~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF-~~~~~l~~i~l~~~i~~i~~----~aF~~c~~L~~i~l~~--~---~i 298 (379)
T 4h09_A 229 TTLGDGAFYGMKALDEIAIPKNVTSIGSFLL-QNCTALKTLNFYAKVKTVPY----LLCSGCSNLTKVVMDN--S---AI 298 (379)
T ss_dssp CEECTTTTTTCSSCCEEEECTTCCEECTTTT-TTCTTCCEEEECCCCSEECT----TTTTTCTTCCEEEECC--T---TC
T ss_pred eEEccccccCCccceEEEcCCCccEeCcccc-ceeehhccccccccceeccc----cccccccccccccccc--c---cc
Confidence 33444444 499999999864311 111344 67889999999762 2222 2478899999999976 3 23
Q ss_pred eEEEE----EcCCcceEEE
Q 012521 211 QTINI----IVQTLKRLSI 225 (461)
Q Consensus 211 ~~~~i----~~~sL~~L~l 225 (461)
..+.- .|.+|+++.+
T Consensus 299 ~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 299 ETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CEECTTTTTTCTTCCEEEC
T ss_pred ceehhhhhcCCCCCCEEEc
Confidence 33321 3578888877
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.24 E-value=56 Score=23.77 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=10.1
Q ss_pred cccCCcccC-CCCccEEEec
Q 012521 135 LELPQSILT-CETLVELKLC 153 (461)
Q Consensus 135 ~~lp~~l~~-~~~L~~L~L~ 153 (461)
..+....|. |.+|+++.|-
T Consensus 9 t~I~~~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQ 28 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcC
Confidence 344444444 6666666653
No 171
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=24.86 E-value=37 Score=17.96 Aligned_cols=17 Identities=12% Similarity=0.516 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCcccceE
Q 012521 413 LEMVRYLLENSKVLEKF 429 (461)
Q Consensus 413 ~~l~~~ll~~a~~Le~m 429 (461)
-.++.|+++|.|+++-+
T Consensus 9 sdimdfvlkntpsmqal 25 (31)
T 2agh_C 9 SDIMDFVLKNTPSMQAL 25 (31)
T ss_dssp HHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHhCChhHHHH
Confidence 36788999999988765
Done!