BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012522
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/427 (77%), Positives = 368/427 (86%)
Query: 35 AGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPS 94
AG++A Y R + DDVVIVAA+RT +CK+KRG FKDT DDLLAPVL+A+IEKT LNPS
Sbjct: 16 AGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPS 75
Query: 95 EVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAG 154
EVGDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGLQAVADVA AIKAG
Sbjct: 76 EVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAG 135
Query: 155 LYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 214
YDIGI AGLESMT N ++ G VNP V+ F QA++CLLPMG+TSENVAQRFGV+RQEQD
Sbjct: 136 FYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQD 195
Query: 215 LXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAK 274
GKFKDEIIPV TK+VDPKTG EK +T+SVDDGIRP TT+A L K
Sbjct: 196 QAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGK 255
Query: 275 LKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI 334
LKP FKKDGTTTAGN+SQVSDGAGAVLLMKRS+A+QKGLP+LGVFR+F+AVGVDP++MGI
Sbjct: 256 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGI 315
Query: 335 GPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPL 394
GPAVAIPAAVK+AGL++DDI+LFEINEAFASQ+VYC KLGLDPEK+NVNGGA+A+GHPL
Sbjct: 316 GPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPL 375
Query: 395 GATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDCVDELCNARMVPTHT 454
GATGARCVATLL EMKRRGKDCRFGV+SMCIG+GMGAAAVFERGD VDEL NAR V
Sbjct: 376 GATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQG 435
Query: 455 HLSKDAK 461
LSKDA+
Sbjct: 436 LLSKDAR 442
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/430 (75%), Positives = 369/430 (85%)
Query: 19 SSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLL 78
SS +S +S S+C+AG++A Y R F DDVVIVAAYR+ +CKAKRGG KDT DD+L
Sbjct: 3 SSTSSSLENLSVSVCAAGDSAAYQRNSVFGDDVVIVAAYRSPLCKAKRGGLKDTYPDDIL 62
Query: 79 APVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCS 138
APVLKA+IEKT +NP+EVGDIVVG+VL GS RA ECRMAAFYAGFPETVP+RTVNRQCS
Sbjct: 63 APVLKALIEKTNINPAEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCS 122
Query: 139 SGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGIT 198
SGLQAVADVA AIKAG YDIGI AGLESMT N ++ G VNPKV+ QA+DCLLPMGIT
Sbjct: 123 SGLQAVADVAAAIKAGFYDIGIGAGLESMTANPMAWEGSVNPKVKTMAQAQDCLLPMGIT 182
Query: 199 SENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTIS 258
SENVAQ+F +TRQEQD G+FKDEIIP+ TKIVDPKTG EK VTIS
Sbjct: 183 SENVAQKFSITRQEQDQAAVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTIS 242
Query: 259 VDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
VDDGIRP T++ADLAKLKP F+KDG+TTAG +SQVSDGAGAVLLMKRS+A+QKGLPILGV
Sbjct: 243 VDDGIRPGTSLADLAKLKPVFRKDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGV 302
Query: 319 FRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDP 378
FR+F+AVGV PS+MGIGPAVAIPAAVK+AGLQIDDI+LFEINEAFASQ+VYC KKL +DP
Sbjct: 303 FRTFAAVGVPPSIMGIGPAVAIPAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDP 362
Query: 379 EKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERG 438
+K+NVNGGA+A+GHPLGATGARCVATLL EMKRRG+DCRFGV+SMCIG+GMGAAAVFERG
Sbjct: 363 QKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERG 422
Query: 439 DCVDELCNAR 448
D DELCNA+
Sbjct: 423 DACDELCNAK 432
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/403 (77%), Positives = 352/403 (87%)
Query: 37 EAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEV 96
++A Y R + DDVVIVAA+RT +CK+KRG FKDT DDLLAPVL+A+IEKT LNPSEV
Sbjct: 1 DSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEV 60
Query: 97 GDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLY 156
GDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGLQAVADVA AIKAG Y
Sbjct: 61 GDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFY 120
Query: 157 DIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLX 216
DIGI AGLESMT N ++ G VNP V+ F QA++CLLPMG+TSENVAQRFGV+RQEQD
Sbjct: 121 DIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQA 180
Query: 217 XXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLK 276
GKFKDEIIPV TK+VDPKTG EK +T+SVDDGIRP TT+A L KLK
Sbjct: 181 AVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLK 240
Query: 277 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGP 336
P FKKDGTTTAGN+SQVSDGAGAVLLMKRS+A+QKGLP+LGVFR+F+AVGVDP++MGIGP
Sbjct: 241 PVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGP 300
Query: 337 AVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGA 396
AVAIPAAVK+AGL++DDI+LFEINEAFASQ+VYC KLGLDPEK+NVNGGA+A+GHPLGA
Sbjct: 301 AVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGA 360
Query: 397 TGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERGD 439
TGARCVATLL EMKRRGKDCRFGV+SMCIG+GMGAAAVFERGD
Sbjct: 361 TGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGD 403
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/387 (58%), Positives = 289/387 (74%), Gaps = 3/387 (0%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
DVV+V RTAIC+A RGGFKDT D+LL+ V+ AV++ L P ++GDI VG VL PG+
Sbjct: 31 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 90
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
A+ R+A F + PETVPL TVNRQCSSGLQAVA +A I+ G YDIG+A G+ESM++
Sbjct: 91 G-AIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSL 149
Query: 170 NSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXX 229
G + ++ +ARDCL+PMGITSENVA+RFG++R++QD
Sbjct: 150 ADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQS 209
Query: 230 XGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGN 289
G F+ EI+PV T + D K G ++ +T++ D+GIRP+TT+ LAKLKPAFKKDG+TTAGN
Sbjct: 210 KGCFQAEIVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGN 268
Query: 290 ASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGL 349
+SQVSDGA A+LL +RS A + GLPILGV RS++ VGV P +MGIGPA AIP A++ AGL
Sbjct: 269 SSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGL 328
Query: 350 QIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEM 409
+ D+++FEINEAFASQ YC++KL L PEKVN GGAVALGHPLG TGAR V TLL+E+
Sbjct: 329 TVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNEL 388
Query: 410 KRRGKDCRFGVISMCIGSGMGAAAVFE 436
KRRGK +GV+SMCIG+GMGAAAVFE
Sbjct: 389 KRRGKRA-YGVVSMCIGTGMGAAAVFE 414
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 338 bits (866), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 191/395 (48%), Positives = 254/395 (64%), Gaps = 22/395 (5%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVI----EKTRLNPSEVGDIVVGTV 104
+DVVIVAA R+AI K +G FKD D LL L I E R + + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 105 LAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
L G+ A E R A +G P + P +NRQCSSGL AV D+A IK G DIG+A G+
Sbjct: 70 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 165 ESMTVN--SISVVGQVN-PKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXX 221
ESMT N +++ +G ++ +++ +A+ CL+PMGIT+ENVA F ++R++QD
Sbjct: 129 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 188
Query: 222 XXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK 281
G F+DEI+P+ K+ D D+G RPN T L+ ++PAF K
Sbjct: 189 QKAYKAKNEGLFEDEILPI--KLPDGSI-------CQSDEGPRPNVTAESLSSIRPAFIK 239
Query: 282 D-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
D GTTTAGNASQVSDG VLL +RS+A Q LP+LG + F VGV P +MG+GPA AI
Sbjct: 240 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 299
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
P +++ GLQ+ DI++FEINEAFA+Q +YCI KLG+D KVN GGA+ALGHPLG TGAR
Sbjct: 300 PKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGAR 359
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVF 435
VAT+L E+K+ + GV+SMCIG+GMGAAA+F
Sbjct: 360 QVATILRELKKD----QIGVVSMCIGTGMGAAAIF 390
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 338 bits (866), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 191/395 (48%), Positives = 254/395 (64%), Gaps = 22/395 (5%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVI----EKTRLNPSEVGDIVVGTV 104
+DVVIVAA R+AI K +G FKD D LL L I E R + + + ++ G V
Sbjct: 7 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 66
Query: 105 LAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
L G+ A E R A +G P + P +NRQCSSGL AV D+A IK G DIG+A G+
Sbjct: 67 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 125
Query: 165 ESMTVN--SISVVGQVN-PKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXX 221
ESMT N +++ +G ++ +++ +A+ CL+PMGIT+ENVA F ++R++QD
Sbjct: 126 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 185
Query: 222 XXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK 281
G F+DEI+P+ K+ D D+G RPN T L+ ++PAF K
Sbjct: 186 QKAYKAKNEGLFEDEILPI--KLPDGSI-------CQSDEGPRPNVTAESLSSIRPAFIK 236
Query: 282 D-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
D GTTTAGNASQVSDG VLL +RS+A Q LP+LG + F VGV P +MG+GPA AI
Sbjct: 237 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
P +++ GLQ+ DI++FEINEAFA+Q +YCI KLG+D KVN GGA+ALGHPLG TGAR
Sbjct: 297 PKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVF 435
VAT+L E+K+ + GV+SMCIG+GMGAAA+F
Sbjct: 357 QVATILRELKKD----QIGVVSMCIGTGMGAAAIF 387
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 267 bits (683), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 229/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
A R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 63 GANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 229/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 265 bits (676), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 229/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 60
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 61 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 120 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 179
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 180 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 233
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 234 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 293
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 294 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 353
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 354 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 263 bits (673), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 228/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E +EAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 229/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E +EAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 262 bits (669), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 229/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+G+P+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 261 bits (668), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 227/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 228/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 228/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+G P+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 261 bits (666), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 228/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 60
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 61 QN-PARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 120 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 179
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 180 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 233
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 234 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 293
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 294 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 353
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 354 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 229/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E +EAFA+Q K LG DP VNVNGGA+A+G+P+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/397 (38%), Positives = 223/397 (56%), Gaps = 20/397 (5%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+VVI AA R+ I G K+ +L PVL+ +++ + P EV ++++G + +
Sbjct: 6 NVVITAAVRSPIGTFG-GALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQR-T 63
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
A R AA AGFP+TV T+ RQ SSG+QA+ A I+ G+ ++ +A G+E+M+
Sbjct: 64 DEANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSS 123
Query: 170 NSISV----VGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXX 219
+ ++ GQ EI + L + MG T+EN+ +++ +TR+EQD
Sbjct: 124 SPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVALR 183
Query: 220 XXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 279
G F D+I+P+ K K V S D+ R + T LA LKPAF
Sbjct: 184 SHTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGLKPAF 237
Query: 280 KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVA 339
+KDG+ TAGNAS ++DG+ ++LM A +KGL L +S GVDP +MGIGPA A
Sbjct: 238 RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPA 297
Query: 340 IPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGA 399
I ++ ++D +L EINEAFA+QY+ K+L LD EKVNVNG V LGHP+G TGA
Sbjct: 298 IRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGA 357
Query: 400 RCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
R +L+ E+KRRG G+ S+C+G G+G A E
Sbjct: 358 RITVSLIHELKRRG--LEKGIASLCVGGGIGVALFIE 392
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 257 bits (657), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 228/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+G+P+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 234/404 (57%), Gaps = 30/404 (7%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
DVVIV+A RT I + G FK+T A L +K I + LN SE+ ++++G VL G
Sbjct: 6 DVVIVSAVRTPIG-SFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT- 168
+ + R A AG P +VP TVN+ C SGL++V A +I +G D+ IA G E+M+
Sbjct: 65 GQNV-ARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQ 123
Query: 169 -------------VNSISVVGQV--NPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQ 213
+ +I++V + + ++ F Q MGIT+EN+A +F TR+ Q
Sbjct: 124 APYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYH-----MGITAENIATKFEFTREMQ 178
Query: 214 DLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLA 273
D +FK+EI+PV+ I K +E TI D+ + T L+
Sbjct: 179 DKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGK--IE---TIDKDEYPKLGMTFEGLS 233
Query: 274 KLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMG 333
KLKPAFKKDGT TAGNAS ++DGA ++LM + A + G+ L +S+++ GV+P VMG
Sbjct: 234 KLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMG 293
Query: 334 IGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHP 393
GP A A+K AGL I+DI+L E NEAFA+Q + +L +D K+NVNGGA+ALGHP
Sbjct: 294 TGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHP 353
Query: 394 LGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
+GA+GAR + TL+ EM++R G+ ++CIG G G + V R
Sbjct: 354 IGASGARILVTLIYEMQKR--KVETGLATLCIGGGQGISMVVSR 395
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 226/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+G P+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 226/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+G P+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++ IG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 155/399 (38%), Positives = 227/399 (56%), Gaps = 21/399 (5%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+VVI +A RTA+ G FK A +L K I++ + P + + ++G VL G
Sbjct: 8 EVVIASAARTAVGSFG-GAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
+ + R A AG P P T+N C SGL++V+ + I G DI + G E+M++
Sbjct: 67 GQNI-ARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSM 125
Query: 170 N-----SISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXX 218
+ S ++ + + +D L MGIT+EN+A+++ +TR+EQD
Sbjct: 126 SPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELAL 185
Query: 219 XXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA 278
GKF +EI+PV K T V+K D+ I+P TT+ LAKL+PA
Sbjct: 186 ASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDK------DEYIKPGTTMEKLAKLRPA 239
Query: 279 FKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAV 338
FKKDGT TAGNAS ++DGA +++M + A + G+ L S+ GVDP +MG GP
Sbjct: 240 FKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVP 299
Query: 339 AIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATG 398
A A+++A + I+DI+L E NEAFA+Q V I+ L +D KVNVNGGA+A+GHP+G +G
Sbjct: 300 ATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSG 359
Query: 399 ARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
AR + TLL EMKRR D + G+ ++CIG GMG + +R
Sbjct: 360 ARILTTLLYEMKRR--DAKTGLATLCIGGGMGTTLIVKR 396
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 162/396 (40%), Positives = 226/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAVG-SFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E NEAFA+Q K LG DP VNVNGGA+A+G P+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++ IG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 224/393 (56%), Gaps = 14/393 (3%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPG 108
DVVIV RT + ++K G ++T A+D+ A ++ V+E+ ++++P EV D++ G V
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
RMA+ P T +TV+R C S + A+ A AI G D+ + G+E M
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM- 124
Query: 169 VNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXX 228
+S++ V+P + A MG+T+E + + G++R++QD
Sbjct: 125 -GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKAT 183
Query: 229 XXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KDGTTTA 287
GKFKDEIIP+ + G K D+ IRP+TT+ LA LKPAF K GT TA
Sbjct: 184 VEGKFKDEIIPMQGY---DENGFLK--IFDYDETIRPDTTLESLAALKPAFNPKGGTVTA 238
Query: 288 GNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSA 347
G +SQ++DGA +++M A GL L V RS + GVDP++MG GP A A+K A
Sbjct: 239 GTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRA 298
Query: 348 GLQIDDINLFEINEAFASQYVYCIKKLG-LDP--EKVNVNGGAVALGHPLGATGARCVAT 404
GL + DI+ E+NEAFA+Q + +K L LD EKVN++GGA+ALGHP G +GAR T
Sbjct: 299 GLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGT 358
Query: 405 LLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
LL+ MK+ G FG+ +MCIG G G A VFER
Sbjct: 359 LLNVMKQNGG--TFGLSTMCIGLGQGIATVFER 389
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/409 (38%), Positives = 224/409 (54%), Gaps = 35/409 (8%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+ IV A RT I K G DDLLA L +++++ + EV D+ G G
Sbjct: 3 EAWIVEAVRTPIGK-HGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
RMA AGFP V TVNR C SGL+AVA A AI AG + I +G+ESM+
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 170 NSISV------------------VGQ--VNPKVEIFTQARDCLLPMGITSENVAQRFGVT 209
+V +G VNPK++ MG T+EN+A+ +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTES----MGETAENLAEMYGIR 177
Query: 210 RQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 269
R+EQD G+F+DE++PV K G E+ + + D+G R +T++
Sbjct: 178 REEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK-----RGKEE-ILVEQDEGPRRDTSL 231
Query: 270 ADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDP 329
LA L+P F++ GT TAGN+S ++DGA AVLL+ A GL L R+ + GV P
Sbjct: 232 EKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPP 291
Query: 330 SVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKK--LGLDPEKVNVNGGA 387
+MGIGP A A++ AGL D+ L E+NEAFA+Q + +++ L ++ +++N NGGA
Sbjct: 292 RIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGA 351
Query: 388 VALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ALGHPLGA+GAR + TL+ EM+RR +FG+ +MCIG G G A V E
Sbjct: 352 IALGHPLGASGARILTTLVHEMRRR--KVQFGLATMCIGVGQGIAVVVE 398
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 228/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E EAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 227/396 (57%), Gaps = 20/396 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAVG-SFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR 400
A++ AG +I D++L E EAFA+Q K LG DP VNVNGGA+A+GHP+GA+GAR
Sbjct: 297 RKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 401 CVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 244 bits (623), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 232/410 (56%), Gaps = 34/410 (8%)
Query: 46 AFDDDVVIVAAYRTAICKAKRGGFKDTLA----DDLLAPVLKAVIEKTRLNPSEVGDIVV 101
A D VVIV+A RT I G F LA DL + V+K V+++ + P +V +++
Sbjct: 3 AGSDPVVIVSAARTII-----GSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIF 57
Query: 102 GTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIA 161
G VLA G + R A+ AG P +VP + SGL+AV +I G I +A
Sbjct: 58 GHVLAAGCGQN-PVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVA 116
Query: 162 AGLESMT-------VNSISVVGQVNPKVEIFTQA-----RDCLLPMGITSENVAQRFGVT 209
G+E+M+ + + +G++ I +C MGIT+ENVA+++ V+
Sbjct: 117 GGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC--HMGITAENVAKKWQVS 174
Query: 210 RQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 269
R++QD G F EI+PV +V + G+ + + D+ R + I
Sbjct: 175 REDQDKVAVLSQNRTENAQKAGHFDKEIVPV---LVSTRKGL---IEVKTDEFPRHGSNI 228
Query: 270 ADLAKLKPAFKKDGT--TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGV 327
++KLKP F DGT T NAS ++DGA AV+LMK+S A ++GL L S+S VGV
Sbjct: 229 EAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV 288
Query: 328 DPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGA 387
+PS+MGIGP AI AV AG ++D+++FEINEAFA+ +K+LGL+PEKVN+ GGA
Sbjct: 289 EPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGA 348
Query: 388 VALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
+ALGHPLGA+G R + TLL ++R G+ GV ++CIG GMG A +R
Sbjct: 349 IALGHPLGASGCRILVTLLHTLERMGRS--RGVAALCIGGGMGIAMCVQR 396
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/394 (38%), Positives = 209/394 (53%), Gaps = 14/394 (3%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAP 107
+ VVIV A RT ++K G F++ A+DL A + ++++ + L + + DI G V
Sbjct: 2 EQVVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 108 GSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 167
R AA A P +VP TVNR C S QA+ D A I G + + G+E
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHX 121
Query: 168 TVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXX 227
S +P + G+T+E +++ G++R+ QD
Sbjct: 122 GHVPXSHGVDFHPGLS--RNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARAWAA 179
Query: 228 XXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK-DGTTT 286
G FK EIIP D GV K+ + D+ IRP TT+ L+ L+PAF GT T
Sbjct: 180 TQSGAFKTEIIPTGGHDAD---GVLKQ--FNYDEVIRPETTVEALSTLRPAFDPVSGTVT 234
Query: 287 AGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKS 346
AG +S +SDGA A L+ S A + GL RS + VG DPS+ G GP A A+K
Sbjct: 235 AGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLALKK 294
Query: 347 AGLQIDDINLFEINEAFASQYVYCIKKLGLDP---EKVNVNGGAVALGHPLGATGARCVA 403
AGL DI++FE NEAFA+Q + CIK LGL EK+N+NGGA+ALGHPLG +GAR
Sbjct: 295 AGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHPLGCSGARIST 354
Query: 404 TLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
TL++ +R KD +FG+ + CIG G G A VFER
Sbjct: 355 TLINLXER--KDAQFGLATXCIGLGQGIATVFER 386
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 203/417 (48%), Gaps = 39/417 (9%)
Query: 46 AFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTV 104
+ ++ I A RT K K G + +L+ ++ + + L+ + + D+++G V
Sbjct: 4 SMSEEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVV 63
Query: 105 LAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
G R A AG PET +NR C+SGL+AV A +++G D+ +A G+
Sbjct: 64 SPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGV 123
Query: 165 ESMT---VNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXX 221
ESM+ + S +P+ T R +P GI ++ +A G +R++ D
Sbjct: 124 ESMSRVPMGSDGGAWATDPE----TNYRIGFVPQGIGADLIATLEGFSREDVDAYALRSQ 179
Query: 222 XXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF-- 279
G F ++PV + V + D+ +RP+TT+ LAKLK AF
Sbjct: 180 QKAAAAWSGGYFAKSVVPVRDQ--------NGLVILDHDEHMRPDTTMEGLAKLKTAFDG 231
Query: 280 -------------------KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFR 320
K + T GN+S + DGA VL+ +GL
Sbjct: 232 VGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIV 291
Query: 321 SFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEK 380
+ + G DP +M GP A + AGL IDDI+LFE+NEAFAS + K L + EK
Sbjct: 292 ATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEK 351
Query: 381 VNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
+NVNGGA+A+GHPLGATGA T++ E++RR + R +I++CIG GMG A + ER
Sbjct: 352 LNVNGGAIAMGHPLGATGAMITGTMVDELERR--NARRALITLCIGGGMGVATIIER 406
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 208/409 (50%), Gaps = 33/409 (8%)
Query: 44 KPAFDDDVVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDI 99
KP + VVIV+A RT I G F +L A L + ++ IEK + EV +
Sbjct: 4 KPTLKE-VVIVSATRTPI-----GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEA 57
Query: 100 VVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIG 159
+G VL G +A R A AG P + P T+N+ C+SG++A+ + ++ G D+
Sbjct: 58 YMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVM 116
Query: 160 IAAGLESMTVNSISVVGQVNP----KVEIFTQARDCL------LPMGITSENVAQRFGVT 209
+A G+ESM+ + P K+E +D L + MG +EN A++ +
Sbjct: 117 VAGGMESMSNVPYVMNRGSTPYGGVKLEDLI-VKDGLTDVYNKIHMGSCAENTAKKLNIA 175
Query: 210 RQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 269
R EQD GKF +E+IPV + + V + D+ +
Sbjct: 176 RNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKG-----QPDVVVKEDEEYK-RVDF 229
Query: 270 ADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD 328
+ + KLK F+K+ GT TA NAS ++DGA A++LM A + + L +F+ V+
Sbjct: 230 SKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVE 289
Query: 329 PSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAV 388
P I P A +K GL+ +DI ++E+NEAF+ + IK L +DP+KVN+NGGAV
Sbjct: 290 PIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAV 349
Query: 389 ALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
+LGHP+G +GAR V L +K+ +G+ S+C G G +A + ++
Sbjct: 350 SLGHPIGMSGARIVGHLTHALKQ----GEYGLASICNGGGGASAMLIQK 394
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 207/409 (50%), Gaps = 33/409 (8%)
Query: 44 KPAFDDDVVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDI 99
KP + VVIV+A RT I G F +L A L + ++ IEK + EV +
Sbjct: 4 KPTLKE-VVIVSATRTPI-----GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEA 57
Query: 100 VVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIG 159
+G VL G +A R A AG P + P T+N+ +SG++A+ + ++ G D+
Sbjct: 58 YMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVM 116
Query: 160 IAAGLESMTVNSISVVGQVNP----KVEIFTQARDCL------LPMGITSENVAQRFGVT 209
+A G+ESM+ + P K+E +D L + MG +EN A++ +
Sbjct: 117 VAGGMESMSNVPYVMNRGSTPYGGVKLEDLI-VKDGLTDVYNKIHMGSCAENTAKKLNIA 175
Query: 210 RQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 269
R EQD GKF +E+IPV + + V + D+ +
Sbjct: 176 RNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKG-----QPDVVVKEDEEYK-RVDF 229
Query: 270 ADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD 328
+ + KLK F+K+ GT TA NAS ++DGA A++LM A + + L +F+ V+
Sbjct: 230 SKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVE 289
Query: 329 PSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAV 388
P I P A +K GL+ +DI ++E+NEAF+ + IK L +DP+KVN+NGGAV
Sbjct: 290 PIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAV 349
Query: 389 ALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
+LGHP+G +GAR V L +K+ +G+ S+C G G +A + ++
Sbjct: 350 SLGHPIGMSGARIVGHLTHALKQ----GEYGLASICNGGGGASAMLIQK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 205/403 (50%), Gaps = 32/403 (7%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL 105
+VVIV+A RT I G F +L A L + ++ IEK + EV + +G VL
Sbjct: 20 EVVIVSATRTPI-----GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVL 74
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
G +A R A AG P + P T+N+ +SG++A+ + ++ G D+ +A G+E
Sbjct: 75 QGGEGQA-PTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGME 133
Query: 166 SMTVNSISVVGQVNP----KVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDL 215
SM+ + P K+E +D L + MG +EN A++ + R EQD
Sbjct: 134 SMSNVPYVMNRGSTPYGGVKLEDLI-VKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDA 192
Query: 216 XXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKL 275
GKF +E+IPV + + V + D+ + + + KL
Sbjct: 193 YAINSYTRSKAAWEAGKFGNEVIPVTVTVKG-----QPDVVVKEDEEYK-RVDFSKVPKL 246
Query: 276 KPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI 334
K F+K+ GT TA NAS ++DGA A++LM A + + L +F+ V+P I
Sbjct: 247 KTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPI 306
Query: 335 GPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPL 394
P A +K GL+ +DI ++E+NEAF+ + IK L +DP+KVN+NGGAV+LGHP+
Sbjct: 307 APVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPI 366
Query: 395 GATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
G +GAR V L +K+ +G+ S+C G G +A + ++
Sbjct: 367 GMSGARIVGHLTHALKQ----GEYGLASICNGGGGASAMLIQK 405
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 285 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI----GPAV-- 338
+ A + +++GAG ++L + S A ++G P+L V R SAV D + G+ GPA
Sbjct: 254 SKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQR 312
Query: 339 AIPAAVKSAGLQIDDINLFEIN 360
I A+++AG++ D++ E +
Sbjct: 313 VIRRALENAGVRAGDVDYVEAH 334
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 263 IRPNTTIA--DLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLA 308
++PNT++ L L P TAGN S+G AVLL K+SLA
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLA 241
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 342 AAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARC 401
AA + G +D+++ F I++ +K G+DP KV G H G G
Sbjct: 247 AARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGE----H--GNIGPAS 300
Query: 402 VATLLSEMKRRGKDCRFGVISMC-IGSGM 429
V +LS++K G+ + I++ IGSG+
Sbjct: 301 VPIVLSKLKELGRLKKGDRIALLGIGSGL 329
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Query: 295 DGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDI 354
D AGA+ + +LA G I G R+ V GI A+A+ A + AG+ + DI
Sbjct: 22 DEAGALTITHSALAETTG--IKGTLRN---------VFGIQEALALVA--RGAGIAVSDI 68
Query: 355 NLFEINEA 362
+L INEA
Sbjct: 69 SLIRINEA 76
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 277 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
PA TT N + GAG ++M+ LA++ G+PI G+
Sbjct: 1163 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1204
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 277 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
PA TT N + GAG ++M+ LA++ G+PI G+
Sbjct: 1362 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1403
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 277 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
PA TT N + GAG ++M+ LA++ G+PI G+
Sbjct: 1362 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1403
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 342 AAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARC 401
AA + G +++++ F I++ +K G+DP KV G H G G
Sbjct: 254 AAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGE----H--GNIGPAS 307
Query: 402 VATLLSEMKRRGKDCRFGVISMC-IGSGM 429
V +LS++K G+ + I++ IGSG+
Sbjct: 308 VPIVLSKLKELGRLKKGDRIALLGIGSGL 336
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 342 AAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARC 401
AA + G +++++ F I++ +K G+DP KV G H G G
Sbjct: 253 AAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGE----H--GNIGPAS 306
Query: 402 VATLLSEMKRRGKDCRFGVISMC-IGSGM 429
V +LS++K G+ + I++ IGSG+
Sbjct: 307 VPIVLSKLKELGRLKKGDRIALLGIGSGL 335
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 284 TTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
T+T N S G G ++M LA++ G+PI G+
Sbjct: 1344 TSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGI 1378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,156,884
Number of Sequences: 62578
Number of extensions: 478834
Number of successful extensions: 1360
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 72
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)