BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012523
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/463 (26%), Positives = 209/463 (45%), Gaps = 44/463 (9%)
Query: 3 FFDSTPVGRIFTRVSSDMSTMD-------FDLPSAISLSAAATTDVFIIIAVMASVTWPV 55
FFD TP G I +RV +D+ ++ S I A A +F + +++ VT +
Sbjct: 127 FFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSI 186
Query: 56 L-IVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAF----KM 110
+ + + T IV+ + Y+ + R L ++NG + I G+ I+ F K
Sbjct: 187 VPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDI--------SGLTVIKLFTREEKE 238
Query: 111 MDMF--FENYLKLVDTDARLFFHSNAATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPG 168
M+ F L+ V T A++F +V + +
Sbjct: 239 MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIAT 298
Query: 169 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPE---PPAI-IEETKPP 224
F+G S + L+ ++ + + + S ERI + + L E P A+ + E +
Sbjct: 299 FIGYSRQFTRPLNE----LSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVR-- 352
Query: 225 ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLV 284
G IE +++ Y P VLK IT K +++ L R
Sbjct: 353 ------GEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405
Query: 285 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWE 341
+ + G+IL+DG+DI + LR+ + I+ Q+ LF +V+ NL +P +D EI E
Sbjct: 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA--TDEEIKE 463
Query: 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASID 401
A + I LP ++ ++D GE+ S GQRQL + R L +ILILDEAT+++D
Sbjct: 464 AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 402 SATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444
+ T+ +Q + + G T I IAHR+ TI ++D+++VL G
Sbjct: 524 TKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGE 566
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 3/244 (1%)
Query: 205 RQFMHLPPEPPAIIEETKPPASWPS-HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXX 263
++ + + E PAI EE + P+ G + E+++ RY NT VL G+ + K
Sbjct: 314 KRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLV 372
Query: 264 XXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS 323
L++ + RL++PE GR+ +D LD+ ++ LKDLR +S +PQE LF G+
Sbjct: 373 AVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGT 432
Query: 324 VRTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382
++ NL +D+EI EA + Q+ I LP DS V G N+S GQ+Q + R
Sbjct: 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492
Query: 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442
L+K+ ++LILD+ T+S+D T+ + ++ G T I ++PT +D ++VL
Sbjct: 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHE 552
Query: 443 GSFS 446
G +
Sbjct: 553 GKVA 556
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 1/215 (0%)
Query: 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEP 286
WPS G++ ++DL +Y +L+ I+ + L+SA RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 287 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKC 346
E G I IDG+ S+ L+ R +IPQ+ +F G+ R NLDP +SD EIW+ ++
Sbjct: 74 E-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 347 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406
L++ I + P LD + D G S G +QL CL R +L + +IL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 407 ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLS 441
I++R +++ F TVI R+ + + D +V+
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIE 227
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/466 (25%), Positives = 195/466 (41%), Gaps = 39/466 (8%)
Query: 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAIS--LSAAATTDVFIIIAVMASVTWPVLIVAI 60
FFD T G + R+SSD + + + +S L A A V I + S ++++
Sbjct: 112 FFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSV 171
Query: 61 -PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYL 119
P V + I G YL R+L ++ + A A E V ++RAF E Y
Sbjct: 172 VPPVSIIAVIYGRYL---RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYA 228
Query: 120 KLVD-----------TDARLFFHSNAATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPG 168
VD A F + + +VL + +
Sbjct: 229 SKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYA 288
Query: 169 F-VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASW 227
F VG+S+ ++ +Y L + + R+ + + P+ P E
Sbjct: 289 FWVGISIGG----------LSSFYSELMKGLGAGGRLWELLEREPKLP--FNEGVILNEK 336
Query: 228 PSHGRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVE 285
G +E +++ Y RP P + + + + ++S L RL +
Sbjct: 337 SFQGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395
Query: 286 PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL-----DPLGMYSDNEIW 340
P +G I +DG DI + LR+K+ + QEP LF S+ N+ DP + ++ EI
Sbjct: 396 PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQ 454
Query: 341 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400
E A I P ++ V ++G S GQ+Q + R LLK +IL+LDEAT+++
Sbjct: 455 RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 514
Query: 401 DSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFS 446
D+ + ++Q + G TV+ IAHR+ TI +++MV VL G +
Sbjct: 515 DAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/468 (25%), Positives = 198/468 (42%), Gaps = 43/468 (9%)
Query: 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAIS--LSAAATTDVFIIIAVMASVTWPVLIVAI 60
FFD T G + R+SSD + + + +S L A A V I + S ++++
Sbjct: 143 FFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSV 202
Query: 61 -PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYL 119
P V + I G YL R+L ++ + A A E V ++RAF E Y
Sbjct: 203 VPPVSIIAVIYGRYL---RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYA 259
Query: 120 KLVDTDARL----------FFHSNAATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLP-G 168
VD +L FF + + L++ H+ G
Sbjct: 260 SKVDHVMQLARKEAFARAGFFGATGLSGNLIV---------LSVLYKGGLLMGSAHMTVG 310
Query: 169 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP---AIIEETKPPA 225
+ L YA + ++ +Y L + + R+ + + P+ P +I K
Sbjct: 311 ELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKS-- 368
Query: 226 SWPSHGRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRL 283
G +E +++ Y RP P + + + + ++S L RL
Sbjct: 369 ---FQGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 424
Query: 284 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL-----DPLGMYSDNE 338
+P +G I +DG DI + LR+K+ + QEP LF S+ N+ DP + ++ E
Sbjct: 425 YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-E 483
Query: 339 IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398
I E A I P ++ V ++G S GQ+Q + R LLK +IL+LDEAT+
Sbjct: 484 IQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATS 543
Query: 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFS 446
++D+ + ++Q + G TV+ IAH + TI +++MV VL G +
Sbjct: 544 ALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKIT 591
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 22/244 (9%)
Query: 217 IIEETKPPASWPSHG--------RIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXX 266
IIE+T S+ + G ++ + Y RP+ P VL+G++ K+
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALV 1065
Query: 267 XXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326
++ L R +P G + +DG +I + ++ LR +L I+ QEP LF S+
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 327 NLDPLGMYSDN-------EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379
N+ Y DN EI A ++ + I LP ++ V D+G S GQ+Q
Sbjct: 1126 NI----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMV 439
+ R L+++ IL+LDEAT+++D+ ++ ++Q + + G T I IAHR+ TI ++D+++V
Sbjct: 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241
Query: 440 LSYG 443
+ G
Sbjct: 1242 IQNG 1245
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 114/219 (52%), Gaps = 8/219 (3%)
Query: 230 HGRIELEDLKVRYRPNTPL-VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G +E +++ Y + +LKG+ K + + RL +P +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNEIWEAME 344
G + IDG DI ++ ++ LR + ++ QEP LF ++ N+ + + M +EI +A++
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM---DEIEKAVK 501
Query: 345 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
+ I +LP D+ V + G S GQ+Q + R L++ +IL+LDEAT+++D+ +
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 405 DAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
+A++Q + + G T I IAHR+ T+ ++D++ G
Sbjct: 562 EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGG 600
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 22/244 (9%)
Query: 217 IIEETKPPASWPSHG--------RIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXX 266
IIE+T S+ + G ++ + Y RP+ P VL+G++ K+
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALV 1065
Query: 267 XXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326
++ L R +P G + +DG +I + ++ LR +L I+ QEP LF S+
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 327 NLDPLGMYSDN-------EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379
N+ Y DN EI A ++ + I LP ++ V D+G S GQ+Q
Sbjct: 1126 NI----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMV 439
+ R L+++ IL+LDEAT+++D+ ++ ++Q + + G T I IAHR+ TI ++D+++V
Sbjct: 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241
Query: 440 LSYG 443
+ G
Sbjct: 1242 IQNG 1245
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 114/219 (52%), Gaps = 8/219 (3%)
Query: 230 HGRIELEDLKVRYRPNTPL-VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G +E +++ Y + +LKG+ K + + RL +P +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNEIWEAME 344
G + IDG DI ++ ++ LR + ++ QEP LF ++ N+ + + M +EI +A++
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM---DEIEKAVK 501
Query: 345 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
+ I +LP D+ V + G S GQ+Q + R L++ +IL+LDEAT+++D+ +
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 405 DAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
+A++Q + + G T I IAHR+ T+ ++D++ G
Sbjct: 562 EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGG 600
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 203/462 (43%), Gaps = 42/462 (9%)
Query: 3 FFDSTPVGRIFTRVSSDM-STMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAI- 60
F+ + VG++ +RV +D+ T DF L +++ T + I +++M + + + A+
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCIT-IIIALSIMFFLDVKLTLAALF 169
Query: 61 --PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENY 118
P I+ Y+ + R+L R A + F E QG+ +++F + D
Sbjct: 170 IFPFYILTVYV---FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIED------ 220
Query: 119 LKLVDTDARLFFHSNAATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPGFVG--LSLSY 176
+A+ F N T +L ++ G + VG L++S
Sbjct: 221 -----NEAKNFDKKN--TNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISG 273
Query: 177 ALTLSSIQVI-------------MTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKP 223
++T+ ++ + + L+ + S++R+ Q L E I
Sbjct: 274 SITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQ---LIDEDYDIKNGVGA 330
Query: 224 PASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRL 283
GRI+++ + +Y N +LK I + ++ LI+ + R
Sbjct: 331 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390
Query: 284 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--MYSDNEIWE 341
+ +G+ILIDG +I LR ++ ++ Q+ LF +V+ N+ LG +D E+ E
Sbjct: 391 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI-LLGRPTATDEEVVE 449
Query: 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASID 401
A + I LP D+ V + G S GQ+Q + R+ L ILILDEAT+++D
Sbjct: 450 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Query: 402 SATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
+++I+Q + T + +AHR+ TIT +D ++V+ G
Sbjct: 510 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 235 LEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILID 294
L D+ +PN+ + G + K + S L R +P G I ID
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGK---------------STIFSLLERFYQPTAGEITID 62
Query: 295 GLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL--DPLGMYSDNEIWEAMEKCQLKATI 352
G I ++ L++ R+++ + Q+ + G++R NL G Y+D ++W+ ++ ++ +
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 353 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRII 412
+P L++ V + G S GQRQ + R L+ +IL+LDEATAS+DS +++++Q+ +
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 413 REEFPGSTVITIAHRVPTITDSDMVMVLSYGSFS 446
G T + IAHR+ TI D+D + + G +
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 6/217 (2%)
Query: 231 GRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G I +E++ Y RP+ P +L+G+ +IS L R +
Sbjct: 414 GDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--YSDNEIWEAMEKC 346
G+I IDG+D+ + L+ LR ++++ QEP LF ++ N+ LG + E+ A +
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENI-SLGKEGITREEMVAACKMA 531
Query: 347 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406
+ I LP ++ V D G S GQ+Q + R L++ +IL+LDEAT+++D+ ++
Sbjct: 532 NAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG 591
Query: 407 ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
I+Q+ + + G T I IAHR+ TI ++D+++ G
Sbjct: 592 IVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNG 628
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 119/221 (53%), Gaps = 8/221 (3%)
Query: 230 HGRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE 287
+G++ ++++ Y RP +LKG++ + + +++ L R +
Sbjct: 1074 YGKVIFKNVRFAYPERPEIE-ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132
Query: 288 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWEAM 343
G I IDG +I ++ + R++++I+ QEPTLF S+ N LDP + + ++ EA
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV-TMAQVEEAA 1191
Query: 344 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403
+ I+ LP ++ V D G S GQ+Q + R L++ +IL+LDEAT+++D+
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 1251
Query: 404 TDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444
++ ++Q + G T I IAHR+ T+ ++D + V+S G+
Sbjct: 1252 SEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 18/131 (13%)
Query: 3 FFDS--TPVGRIFTRVSSDM----STMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVL 56
FFDS G+I TR+++D+ + +DF + I+ + I +A +L
Sbjct: 844 FFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAG--IGLAFFYGWQMALL 901
Query: 57 IVAI-PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN---FAAETSQGVVSIRAFKMMD 112
I+AI P V +Y++G R N + + + A E + V +++A D
Sbjct: 902 IIAILPIVAFGQYLRG------RRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARED 955
Query: 113 MFFENYLKLVD 123
F+EN+ + +D
Sbjct: 956 TFYENFCEKLD 966
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 112/219 (51%), Gaps = 5/219 (2%)
Query: 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 289
H I +++ RY+P++P++L I + K+ L + R PENG
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKC 346
++LIDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLA 118
Query: 347 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406
IS L ++ V ++G S GQRQ + R L+ +ILI DEAT+++D ++
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 407 ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
++ R + + G TVI IAHR+ T+ ++D ++V+ G
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 217
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 112/219 (51%), Gaps = 5/219 (2%)
Query: 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 289
H I +++ RY+P++P++L I + K+ L + R PENG
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKC 346
++LIDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLA 118
Query: 347 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406
IS L ++ V ++G S GQRQ + R L+ +ILI DEAT+++D ++
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 407 ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
++ R + + G TVI IAHR+ T+ ++D ++V+ G
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 217
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 5/216 (2%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 349
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 119
Query: 350 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQ 409
IS L ++ V ++G S GQRQ + R L+ +ILI DEAT+++D ++ ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
R + + G TVI IAHR+ T+ ++D ++V+ G
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 5/216 (2%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 349
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 350 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQ 409
IS L ++ V ++G S GQRQ + R L+ +ILI DEAT+++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
R + + G TVI IAHR+ T+ ++D ++V+ G
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 221
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 5/216 (2%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 349
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 350 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQ 409
IS L ++ V ++G S GQRQ + R L+ +ILI D+AT+++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
R + + G TVI IAHR+ T+ ++D ++V+ G
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 221
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 5/216 (2%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 349
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 119
Query: 350 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQ 409
IS L ++ V ++G S GQRQ + R L+ +ILI DEAT+++D ++ ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
R + + G TVI IA R+ T+ ++D ++V+ G
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKI 215
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 5/216 (2%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 349
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 350 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQ 409
IS L ++ V ++G S GQRQ + R L+ +ILI DEAT+++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
R + + G TVI IA R+ T+ ++D ++V+ G
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKI 221
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 106/216 (49%), Gaps = 2/216 (0%)
Query: 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 289
+G ++++D+ Y+ L ++ + + + + R + ++G
Sbjct: 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYSDNEIWEAMEKCQ 347
I +DG D+ L +LR +++ Q LF ++ N+ G Y+ +I +A +
Sbjct: 399 SICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAH 458
Query: 348 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAI 407
I +P LD+ + + G + S GQRQ + R LL+ +LILDEAT+++D+ ++
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 408 LQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
+Q + E TV+ IAHR+ TI +D ++V+ G
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 280 LFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY----- 334
L+R + E G I I G ++ +R+ + I+PQ+ LF +++ N+ +Y
Sbjct: 66 LYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDA 120
Query: 335 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394
+D E+ +A + QL I LP D+ V ++G S G+RQ + R LLK +I+I D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 395 EATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
EAT+S+DS T+ + Q+ + + T+I IAHR+ TI+ ++ +++L+ G
Sbjct: 181 EATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKG 229
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 18/239 (7%)
Query: 231 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 344
G++L+DG + L T+++ + QEP LF S R N+ G+ + E AME
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 345 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
IS P D+ V + G S GQRQ L R L+++ R+LILD+AT+++D+
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 405 DAILQRIIRE--EFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFCVQRIILQL 461
+QR++ E E+ TV+ I H++ + ++ L GS C Q LQL
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGS-------VCEQGTHLQL 243
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 18/239 (7%)
Query: 231 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 344
G++L+DG + L T+++ + QEP LF S R N+ G+ + E AME
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 345 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
IS P D+ V + G +VGQRQ L R L+++ R+LILD AT+++D+
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 405 DAILQRIIRE--EFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFCVQRIILQL 461
+QR++ E E+ TV+ I ++ + ++ L GS C Q LQL
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGS-------VCEQGTHLQL 243
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 18/239 (7%)
Query: 231 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 344
G++L+DG + L T+++ + QEP LF S R N+ G+ + E AME
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 345 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
IS P D+ V + G S GQRQ L R L+++ R+LILD AT+++D+
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 405 DAILQRIIRE--EFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFCVQRIILQL 461
+QR++ E E+ TV+ I ++ + ++ L GS C Q LQL
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGS-------VCEQGTHLQL 243
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 5/224 (2%)
Query: 224 PASWP---SHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISAL 280
P + P GRIE E++ Y + L+ ++ T ++ L
Sbjct: 42 PGAGPLRFQKGRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
Query: 281 FRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN-EI 339
FR + +G I IDG DI + LR+ + ++PQ+ LF ++ N+ + + N E+
Sbjct: 101 FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160
Query: 340 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399
A + + I P + V + G S G++Q + R +LK I++LDEAT++
Sbjct: 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSA 220
Query: 400 IDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
+D++ + +Q + + T I +AHR+ T+ ++D ++V+ G
Sbjct: 221 LDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG 264
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Query: 278 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYS 335
S + R + + G IL+DG D+ L LR +++++ Q LF +V N+ YS
Sbjct: 387 SLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYS 446
Query: 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395
+I EA I+++ LD+ + + G S GQRQ + R LL+ + ILILDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
AT+++D+ ++ +Q + E T + IAHR+ TI +D ++V+ G
Sbjct: 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDG 554
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Query: 223 PPASW--PSH--GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXL 276
PP+ P H G ++ +D+ Y PN P LVL+G+T T + +
Sbjct: 1 PPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 277 ISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSD 336
+ L L +P G++L+DG + + L +++ + QEP +F S++ N+ G+
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIA-YGLTQK 118
Query: 337 ---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393
EI A K + IS LP D+ V + G S GQRQ L R L+++ +LIL
Sbjct: 119 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 178
Query: 394 DEATASIDSATDAILQRIIRE--EFPGSTVITIAHRVPTITDSDMVMVLSYGS 444
D+AT+++D+ + +++++ E E +V+ I + + +D ++ L G+
Sbjct: 179 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGA 231
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Query: 278 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--YS 335
S + R + + G IL+DG D+ L LR +++++ Q LF +V N+ YS
Sbjct: 387 SLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYS 446
Query: 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395
+I EA I+++ LD+ + + G S GQRQ + R LL+ + ILILDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443
AT+++D+ ++ +Q + E T + IAHR+ TI +D ++V+ G
Sbjct: 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 554
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 16/203 (7%)
Query: 247 PLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDL 306
P L GIT + E L+SAL ++ G + I G
Sbjct: 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----------- 66
Query: 307 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 366
++ +PQ+ + S+R N+ + ++ C L + LP + + ++
Sbjct: 67 --SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEK 124
Query: 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA-ILQRII--REEFPGSTVIT 423
G N S GQ+Q L R + I + D+ +++D+ I + +I + T I
Sbjct: 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184
Query: 424 IAHRVPTITDSDMVMVLSYGSFS 446
+ H + + D+++V+S G S
Sbjct: 185 VTHSMSYLPQVDVIIVMSGGKIS 207
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 22/219 (10%)
Query: 233 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 292
+++E+L Y T LKGI K L +++P +GRIL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 293 IDG--LDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLGMYS----DNEIWEAME 344
D +D G+ LR + I+ Q+P LF SV ++ G + ++EI + ++
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDV-SFGAVNMKLPEDEIRKRVD 125
Query: 345 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
+ I L S GQ++ + VL+ ++LILDE TA +D
Sbjct: 126 NALKRTGIEHLK-------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 405 DAILQRIIRE--EFPGSTVITIAHR---VPTITDSDMVM 438
+ + +++ E + G T+I H VP D+ VM
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 276 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 332
LI + L P G +L+DG ++ ++ +L R ++ +I Q L L
Sbjct: 47 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106
Query: 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 388
+ DN K ++K ++ L L+ + D+ + N S GQ+Q + R L
Sbjct: 107 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 159
Query: 389 RILILDEATASIDSATDAILQRIIRE--EFPGSTVITIAHRVPTITD-SDMVMVLSYGSF 445
++L+ DEAT+++D AT + ++++ G T++ I H + + D V V+S G
Sbjct: 160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 29/234 (12%)
Query: 231 GRIELEDLKVRYRPNTPL---VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE 287
GRIE+ ++ + TPL L+ ++ E L+ + L+EP
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 288 NGRILIDGLDICSMGLKDLRTKLSIIPQEP--TLFRGSV--RTNLDPLGMYSDNE----I 339
+G +L DG ++R + I Q P F V Y D + +
Sbjct: 63 SGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 340 WEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397
+AME L + R+P L S G+++ + V++ ILILDE
Sbjct: 120 KKAMEFVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPL 168
Query: 398 ASIDSATDAILQRIIRE-EFPGSTVITIAHRVPTITDS-DMVMVLSYGSFSFNN 449
+D L RI+ + + G TVI I+H + T+ + D V+VL G F+
Sbjct: 169 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDG 222
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 276 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 332
LI + L P G +L+DG ++ ++ +L R ++ +I Q L L
Sbjct: 70 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129
Query: 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 388
+ DN K ++K ++ L L+ + D+ + N S GQ+Q + R L
Sbjct: 130 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 182
Query: 389 RILILDEATASIDSATDAILQRIIRE--EFPGSTVITIAHRVPTITD-SDMVMVLSYGSF 445
++L+ D+AT+++D AT + ++++ G T++ I H + + D V V+S G
Sbjct: 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 284 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEA 342
+EP G+I G ++S Q + G+++ N+ +G+ Y +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 343 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402
++ CQL+ IS+ + + + G S GQR L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 403 ATDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
T+ I + + + T I + ++ + +D +++L GS F
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 29/224 (12%)
Query: 225 ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLV 284
A W G L+D+ + L + G T K L+ + +
Sbjct: 14 AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGK---------------TSLLMMIMGEL 58
Query: 285 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAME 344
EP G+I G ++S Q + G+++ N+ Y + ++
Sbjct: 59 EPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIK 105
Query: 345 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
CQL+ IS+ + + + G S GQR L R + K + +LD +D T
Sbjct: 106 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 405 DA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
+ I + + + T I + ++ + +D +++L GS F
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 209
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 284 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEA 342
+EP G+I G ++S Q + G+++ N+ +G+ Y +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 343 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402
++ CQL+ IS+ + + + G S GQR L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 403 ATDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
T+ I + + + T I + ++ + +D +++L GS F
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 276 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 332
LI + L P G +L+DG ++ ++ +L R ++ I Q L L
Sbjct: 70 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALP 129
Query: 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 388
+ DN K ++K ++ L L+ + D+ + N S GQ+Q + R L
Sbjct: 130 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 182
Query: 389 RILILDEATASIDSATDAILQRIIRE--EFPGSTVITIAHRVPTITD-SDMVMVLSYGSF 445
++L+ D+AT+++D AT + ++++ G T++ I H + D V V+S G
Sbjct: 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 14/165 (8%)
Query: 284 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAM 343
+EP G+I G ++S Q + G+++ N+ Y + +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVI 134
Query: 344 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403
+ CQL+ IS+ + + + G S GQR L R + K + +LD +D
Sbjct: 135 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 194
Query: 404 TDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
T+ I + + + T I + ++ + +D +++L GS F
Sbjct: 195 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 239
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395
D + E E L ++R P L S GQRQ LGR +++R ++ + DE
Sbjct: 120 DKRVREVAEXLGLTELLNRKPREL-----------SGGQRQRVALGRAIIRRPKVFLXDE 168
Query: 396 ATASIDS----ATDAILQRIIREEFPGSTVITIAH-RVPTITDSDMVMVLSYGSFS 446
+++D+ A L+++ R+ G T I + H +V T D + V + G
Sbjct: 169 PLSNLDAKLRVKXRAELKKLQRQ--LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQ 222
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 29/233 (12%)
Query: 232 RIELEDLKVRYRPNTPL---VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
RIE+ ++ + TPL L+ ++ E L+ + L+EP +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 289 GRILIDGLDICSMGLKDLRTKLSIIPQEP--TLFRGSV--RTNLDPLGMYSDNE----IW 340
G +L DG ++R + I Q P F V Y D + +
Sbjct: 62 GDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 341 EAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398
+AME L + R+P L S G+++ + V++ ILILDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 399 SIDSATDAILQRIIRE-EFPGSTVITIAHRVPTITDS-DMVMVLSYGSFSFNN 449
+D L RI+ + + G TVI I+H + T+ + D V+VL G F+
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDG 220
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 29/224 (12%)
Query: 225 ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLV 284
A W G L+D+ + L + G T K L+ + +
Sbjct: 26 AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGK---------------TSLLMMIMGEL 70
Query: 285 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAME 344
EP G+I G ++S Q + G+++ N+ Y + ++
Sbjct: 71 EPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIK 117
Query: 345 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
CQL+ IS+ + + + G S GQR L R + K + +LD +D T
Sbjct: 118 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
Query: 405 DA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
+ I + + + T I + ++ + +D +++L GS F
Sbjct: 178 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 221
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 32/225 (14%)
Query: 225 ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLV 284
A W G L+D+ + L + G T K L+ + +
Sbjct: 14 AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGK---------------TSLLMMIMGEL 58
Query: 285 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEAM 343
EP G+I G ++S Q + G+++ N+ +G+ Y + +
Sbjct: 59 EPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENI--IGVSYDEYRYRSVI 103
Query: 344 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403
+ CQL+ IS+ + + + G S GQR L R + K + +LD +D
Sbjct: 104 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 163
Query: 404 TDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
T+ I + + + T I + ++ + +D +++L GS F
Sbjct: 164 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 208
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 291 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 350
+LI G S G+ ++S Q + G+++ N+ Y + ++ CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQ 141
Query: 351 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT-DAILQ 409
I++ ++ + + G S GQR L R + K + +LD +D T + + +
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
+ + T I + ++ + +D +++L GS F
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 239
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 20/125 (16%)
Query: 286 PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGM-----YSDNEI 339
P++GRIL+DG D+ + + + ++ + Q +LF +V+ NL+ GM +
Sbjct: 52 PDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLE-FGMRMKKIKDPKRV 108
Query: 340 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399
+ +++ + R P+ L S G++Q L R L+ +IL+LDE ++
Sbjct: 109 LDTARDLKIEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSA 157
Query: 400 IDSAT 404
+D T
Sbjct: 158 LDPRT 162
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 291 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEK-CQLK 349
+LI G S G+ ++S Q + G+++ N+ +G+ D ++++ K CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENI--IGVSYDEYRYKSVVKACQLQ 139
Query: 350 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT-DAIL 408
I++ ++ + + G S GQR L R + K + +LD +D T + +
Sbjct: 140 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 199
Query: 409 QRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
+ + + T I + ++ + +D +++L GS F
Sbjct: 200 ESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 238
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 291 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 350
+LI G S G+ ++S Q + G+++ N+ Y + ++ CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQ 141
Query: 351 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT-DAILQ 409
I++ ++ + + G S GQR L R + K + +LD +D T + + +
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
+ + T I + ++ + +D +++L GS F
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 239
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 283 LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWE 341
+V+P+ G + ++G DI L R + +PQ+ LF SV N+ G+ + +
Sbjct: 47 IVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPHLSVYRNI-AYGLRNVERVER 103
Query: 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASID 401
++ + + LLD + S G+RQ L R L+ + R+L+LDE +++D
Sbjct: 104 DRRVREMAEKLG-IAHLLDRKPA----RLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
Query: 402 SATDAILQ---RIIREEF 416
T +L R ++ EF
Sbjct: 159 LKTKGVLMEELRFVQREF 176
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD-AILQRIIREEFPGSTVITIAHR 427
N S GQ+Q + +L + R L LDE + +D + I Q + + G +I + H
Sbjct: 140 NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
Query: 428 VPTITDSDMVMVLSYGSFSF 447
+ + D D ++ +S G+ F
Sbjct: 200 LEYLDDMDFILHISNGTIDF 219
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 291 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 350
+LI G S G+ ++S Q + G+++ N+ Y + ++ CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 141
Query: 351 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT-DAILQ 409
I++ ++ + + G S GQR L R + K + +LD +D T + + +
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
+ + T I + ++ + +D +++L GS F
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 239
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 46/253 (18%)
Query: 233 IELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE--- 287
I +EDL+ Y R T GI+ E +I A+ + + P
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 288 -NGRILIDGLDICSMGLKDLRT----KLSIIPQ------EPTL-----FRGSVRTNLDPL 331
+GR+L G D+ +M ++LR +++++PQ PT+ F+ +V +
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAH---- 120
Query: 332 GM-YSDNEIWE-AMEKCQL-----KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384
G+ +S +E+ E A EK ++ +A ++ P+ L S G +Q + L
Sbjct: 121 GVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQL-----------SGGMKQRVLIALAL 169
Query: 385 LKRNRILILDEATASIDSATDA-ILQRIIREEFPGS-TVITIAHRVPTITD-SDMVMVLS 441
L +LILDE T+++D T A I+Q + + T+I + H + + +D V V+
Sbjct: 170 LLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIY 229
Query: 442 YGSFSFNNVNFCV 454
G+ N F +
Sbjct: 230 GGNLVEYNSTFQI 242
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 291 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 350
+LI G S G+ ++S Q + G+++ N+ Y + ++ CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 141
Query: 351 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT-DAILQ 409
I++ ++ + + G S GQR L R + K + +LD +D T + + +
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 410 RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
+ + T I + ++ + +D +++L GS F
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 239
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395
D + E E L ++R P L S GQRQ LGR ++++ ++ ++DE
Sbjct: 117 DQRVREVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMDE 165
Query: 396 ATASIDSA----TDAILQRIIREEFPGSTVITIAH-RVPTITDSDMVMVLSYG 443
+++D+ A L+++ R+ G T I + H +V +T D + V++ G
Sbjct: 166 PLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRG 216
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 14/165 (8%)
Query: 284 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAM 343
+EP G+I G ++S Q + G+++ N+ Y + +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVI 134
Query: 344 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403
+ CQL+ IS+ + + + G S GQ+ L R + K + +LD +D
Sbjct: 135 KACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVL 194
Query: 404 TDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
T+ I + + + T I + ++ + +D +++L GS F
Sbjct: 195 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 239
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 284 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEA 342
+EP G+I G ++S Q + G+++ N+ +G+ Y +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 343 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402
++ CQL+ IS+ + + + G S GQ+ L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 192
Query: 403 ATDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447
T+ I + + + T I + ++ + +D +++L GS F
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 24/212 (11%)
Query: 244 PNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGL 303
P ++G++ +E ++ + L P G + I G + L
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD--L 82
Query: 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS--------DNEIWEAMEKCQLKATISRL 355
+ + ++ Q LF+ + G+ D + E + +L++ +R
Sbjct: 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 356 PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIRE- 414
P L S GQ+Q L R L R ++L+ DE A+ID+ L+ +R+
Sbjct: 143 PHEL-----------SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191
Query: 415 -EFPGSTVITIAH-RVPTITDSDMVMVLSYGS 444
+ G T + + H + + +D V+VL G+
Sbjct: 192 HDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395
+ + + E QL + R P L S GQRQ +GR L+ + +LDE
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 396 ATASIDSATDAILQ-RIIR-EEFPGSTVITIAH-RVPTITDSDMVMVLSYGSFS 446
+++D+A ++ I R + G T+I + H +V +T +D ++VL G +
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395
+ + + E QL + R P L S GQRQ +GR L+ + +LDE
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 396 ATASIDSATDAILQ-RIIR-EEFPGSTVITIAH-RVPTITDSDMVMVLSYGSFS 446
+++D+A ++ I R + G T+I + H +V +T +D ++VL G +
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIRE--EFPGSTVITIAHRV 428
S GQ+Q + R L I++ DE T ++DS T + +++++ E G TV+ + H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDI 206
Query: 429 PTITDSDMVMVLSYGS 444
+ ++ L G
Sbjct: 207 NVARFGERIIYLKDGE 222
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 276 LISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGM 333
L+ + + +P +G+I D D+ + KD + ++ Q L+ +V N+ PL +
Sbjct: 45 LLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLEL 102
Query: 334 YS------DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387
D ++ E + + ++R P L S GQ+Q + R L+K
Sbjct: 103 RKAPREEIDKKVREVAKMLHIDKLLNRYPWQL-----------SGGQQQRVAIARALVKE 151
Query: 388 NRILILDEATASIDS----ATDAILQRIIREEFPGSTVITIAH-RVPTITDSDMVMVLSY 442
+L+LDE +++D+ A L+R+ +E G T + + H + + +D + V+
Sbjct: 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIRE 209
Query: 443 GS 444
G
Sbjct: 210 GE 211
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 357 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIR--E 414
+L+D+ + + S GQ+Q L R L+K+ ++L+ DE +++D+ I++ I+ +
Sbjct: 121 LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180
Query: 415 EFPGSTVITIAH-RVPTITDSDMVMVLSYGSF 445
+ G T + + H + +T + + V + G
Sbjct: 181 QELGITSVYVTHDQAEAMTMASRIAVFNQGKL 212
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395
+ + + E QL + R P L S GQRQ +GR L+ + +LD+
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDQ 159
Query: 396 ATASIDSATDAILQ-RIIR-EEFPGSTVITIAH-RVPTITDSDMVMVLSYGSFS 446
+++D+A ++ I R + G T+I + H +V +T +D ++VL G +
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIRE--EFPGSTVITIAHRV 428
S GQ+Q + R L I++ D+ T ++DS T + +++++ E G TV+ + H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206
Query: 429 PTITDSDMVMVLSYGS 444
+ ++ L G
Sbjct: 207 NVARFGERIIYLKDGE 222
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 283 LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGMYS----- 335
L EP GRI D+ + KD +S++ Q ++ +V N+ PL +
Sbjct: 60 LEEPTEGRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117
Query: 336 -DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394
D + A E Q++ ++R P L S GQRQ + R ++ +L++D
Sbjct: 118 IDKRVRWAAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMD 166
Query: 395 EATASIDSATDAILQ---RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
E +++D+ ++ + ++++ +T+ +V +T D + V++ G
Sbjct: 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 283 LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGMYS----- 335
L EP GRI D+ + KD +S++ Q ++ +V N+ PL +
Sbjct: 61 LEEPTEGRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 118
Query: 336 -DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394
D + A E Q++ ++R P L S GQRQ + R ++ +L++D
Sbjct: 119 IDKRVRWAAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMD 167
Query: 395 EATASIDSATDAILQ---RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445
E +++D+ ++ + ++++ +T+ +V +T D + V++ G
Sbjct: 168 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 221
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIRE--EFPGSTVITIAHRV 428
S GQ+Q + R L I++ D+ T ++DS T + +++++ E G TV+ + H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206
Query: 429 PTITDSDMVMVLSYGS 444
+ ++ L G
Sbjct: 207 NVARFGERIIYLKDGE 222
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 366 EGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT-DAILQRIIR-EEFPGSTVIT 423
E + S GQRQL + R + ++++LDE T+++D A D +L +I + TV+
Sbjct: 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184
Query: 424 IAHR-VPTITDSDMVMVLSYGSFSF 447
H+ + ++ ++L+ +F F
Sbjct: 185 TTHQPNQVVAIANKTLLLNKQNFKF 209
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 371 SVGQRQLFCLGRVLLKRNR---ILILDEATASIDSATDAILQR-IIREEFPGSTVITIAH 426
S G+ Q L L + R + +LDE T + A LQR +++ G+TVI + H
Sbjct: 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH 791
Query: 427 RVPTITDSDMVMVLSYGS 444
++ + SD V+ + G+
Sbjct: 792 KMQVVAASDWVLDIGPGA 809
>pdb|1UP7|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
Length = 417
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMYS--DNEIWEAMEK 345
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + ++++ +
Sbjct: 200 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKIST 259
Query: 346 CQLKA 350
+L+A
Sbjct: 260 HELRA 264
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 341 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400
E +EK +L L D + S GQ +L +GR L+ +++++DE A +
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 401 DSA-TDAILQRIIREEFPGSTVITIAHRVPTITD 433
I ++ + G T + I HR+ + +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 218
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 341 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400
E +EK +L L D + S GQ +L +GR L+ +++++DE A +
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 401 DSA-TDAILQRIIREEFPGSTVITIAHRVPTITD 433
I ++ + G T + I HR+ + +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 218
>pdb|1UP6|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
Length = 416
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMY--SDNEIWEAMEK 345
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + + ++ +
Sbjct: 199 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLXEKKXFKKIST 258
Query: 346 CQLKA 350
+L+A
Sbjct: 259 HELRA 263
>pdb|1UP4|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
Length = 415
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 290 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMY--SDNEIWEAMEK 345
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + + ++ +
Sbjct: 198 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLXEKKXFKKIST 257
Query: 346 CQLKA 350
+L+A
Sbjct: 258 HELRA 262
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 29/220 (13%)
Query: 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 288
S ++ + DL RY + VLKG++ + + + L +P
Sbjct: 3 SENKLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE 60
Query: 289 GRILIDGLDICSMGLKD-------------LRTKLSIIPQE------PTLFRGSVRTNLD 329
G I+++G +I + KD LRT+L+++ Q T+ + +
Sbjct: 61 GAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 120
Query: 330 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389
LG+ S ++ E K K I + + + S GQ+Q + R L
Sbjct: 121 VLGL-SKHDARERALKYLAKVGID------ERAQGKYPVHLSGGQQQRVSIARALAMEPD 173
Query: 390 ILILDEATASIDSATDAILQRIIRE-EFPGSTVITIAHRV 428
+L+ DE T+++D + RI+++ G T++ + H +
Sbjct: 174 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 343 MEKCQLKATISRLPMLLD--SSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400
M K +++ + + +LD ++ S GQ+Q L R L+K +L+LDE +++
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 401 DSATDAILQRIIRE--EFPGSTVITIAHRVPTI-TDSDMVMVLSYGSF 445
D+ + +++E G T++ ++H I +D V VL G
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 352
+ G D+ LK R S P P V PLG N + AM + L AT
Sbjct: 80 LTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATY 139
Query: 353 SRLPMLLDSS-----VSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
++ L + + D + G + L N I I D+ +ID AT
Sbjct: 140 NKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG-NLIAIYDDNKITIDGAT 195
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 352
+ G D+ LK R S P P V PLG N + AM + L AT
Sbjct: 78 LTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATY 137
Query: 353 SRLPMLLDSS-----VSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
++ L + + D + G + L N I I D+ +ID AT
Sbjct: 138 NKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG-NLIAIYDDNKITIDGAT 193
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 293 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 352
+ G D+ LK R S P P V PLG N + AM + L AT
Sbjct: 80 LTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATY 139
Query: 353 SRLPMLLDSS-----VSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404
++ L + + D + G + L N I I D+ +ID AT
Sbjct: 140 NKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG-NLIAIYDDNKITIDGAT 195
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 341 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400
E +EK +L L D + S GQ +L +GR L+ +++++D+ A +
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
Query: 401 DSA-TDAILQRIIREEFPGSTVITIAHRVPTITD 433
I ++ + G T + I HR+ + +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 218
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 249 VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDL-- 306
+LKGI+ + K+ L+ L L P G++ ++G ++ K+L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 307 --RTKLS-------IIPQ--------EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLK 349
KL +IP+ P L G + G Y +E+ L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELG-------LG 131
Query: 350 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA-TDAIL 408
+SR P L S G++Q + R L +L DE T ++DSA T ++
Sbjct: 132 DKLSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 409 QRIIREEFPGSTVITIAH 426
++ G++++ + H
Sbjct: 181 DIFLKINEGGTSIVMVTH 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,437,893
Number of Sequences: 62578
Number of extensions: 406528
Number of successful extensions: 1244
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 97
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)