Query 012523
Match_columns 461
No_of_seqs 298 out of 2652
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2E-92 4.4E-97 733.8 49.6 448 1-452 236-687 (716)
2 COG2274 SunT ABC-type bacterio 100.0 2.9E-87 6.3E-92 719.5 53.8 448 1-452 242-692 (709)
3 KOG0054 Multidrug resistance-a 100.0 6.3E-87 1.4E-91 743.0 50.7 450 1-450 906-1356(1381)
4 KOG0055 Multidrug/pheromone ex 100.0 1.1E-82 2.3E-87 694.5 52.5 451 1-453 755-1210(1228)
5 TIGR00957 MRP_assoc_pro multi 100.0 2.9E-82 6.3E-87 738.5 59.4 452 1-452 1053-1504(1522)
6 PRK11174 cysteine/glutathione 100.0 1.4E-81 3.1E-86 677.7 56.4 446 2-452 112-568 (588)
7 PLN03130 ABC transporter C fam 100.0 2.1E-81 4.5E-86 731.0 60.0 452 1-452 1001-1457(1622)
8 COG1132 MdlB ABC-type multidru 100.0 1.2E-80 2.6E-85 667.5 55.4 445 2-452 101-548 (567)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.3E-80 7.1E-85 677.7 57.3 444 2-453 225-670 (686)
10 PLN03232 ABC transporter C fam 100.0 2.5E-80 5.5E-85 721.3 59.4 452 1-452 998-1454(1495)
11 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.8E-79 3.8E-84 674.6 55.6 449 2-453 243-697 (710)
12 TIGR03375 type_I_sec_LssB type 100.0 3.9E-79 8.5E-84 670.0 57.9 445 5-453 238-685 (694)
13 PTZ00243 ABC transporter; Prov 100.0 2.9E-79 6.3E-84 712.1 59.8 453 1-453 1046-1530(1560)
14 TIGR00958 3a01208 Conjugate Tr 100.0 2.4E-79 5.3E-84 671.6 55.7 446 2-453 250-699 (711)
15 PRK11176 lipid transporter ATP 100.0 5.2E-79 1.1E-83 657.2 56.7 447 2-453 114-564 (582)
16 TIGR01193 bacteriocin_ABC ABC- 100.0 2.8E-79 6.1E-84 672.5 54.9 446 2-453 245-694 (708)
17 PRK11160 cysteine/glutathione 100.0 2.5E-78 5.3E-83 649.5 56.8 447 2-453 109-559 (574)
18 PRK10790 putative multidrug tr 100.0 8.7E-78 1.9E-82 648.7 57.3 445 2-453 114-560 (592)
19 TIGR01271 CFTR_protein cystic 100.0 6.5E-78 1.4E-82 700.2 57.8 449 2-452 974-1436(1490)
20 COG4987 CydC ABC-type transpor 100.0 4.9E-78 1.1E-82 606.6 48.8 442 6-452 111-557 (573)
21 TIGR02868 CydC thiol reductant 100.0 1.6E-77 3.6E-82 638.5 53.8 424 2-428 102-529 (529)
22 KOG0055 Multidrug/pheromone ex 100.0 2E-79 4.3E-84 668.8 39.7 449 1-451 119-571 (1228)
23 TIGR02203 MsbA_lipidA lipid A 100.0 3.5E-77 7.5E-82 641.8 56.2 447 2-453 103-553 (571)
24 COG4988 CydD ABC-type transpor 100.0 6.2E-77 1.3E-81 607.7 53.6 443 3-452 90-539 (559)
25 TIGR01846 type_I_sec_HlyB type 100.0 9.8E-77 2.1E-81 650.8 57.0 447 2-453 228-677 (694)
26 PTZ00265 multidrug resistance 100.0 5.3E-77 1.1E-81 688.4 55.9 451 2-452 915-1448(1466)
27 PRK13657 cyclic beta-1,2-gluca 100.0 9.6E-76 2.1E-80 632.1 57.5 448 2-453 105-555 (588)
28 TIGR02857 CydD thiol reductant 100.0 7E-76 1.5E-80 626.0 55.0 434 2-440 93-529 (529)
29 PRK10789 putative multidrug tr 100.0 2.8E-75 6E-80 625.6 55.8 446 2-452 85-534 (569)
30 TIGR02204 MsbA_rel ABC transpo 100.0 5.9E-75 1.3E-79 625.1 56.4 450 2-453 107-560 (576)
31 TIGR01192 chvA glucan exporter 100.0 1.7E-74 3.6E-79 620.8 57.5 447 2-452 105-554 (585)
32 KOG0057 Mitochondrial Fe/S clu 100.0 3.1E-74 6.8E-79 579.4 46.3 440 2-452 123-570 (591)
33 TIGR01842 type_I_sec_PrtD type 100.0 8.9E-73 1.9E-77 603.6 56.9 438 8-452 96-538 (544)
34 KOG0056 Heavy metal exporter H 100.0 8.8E-76 1.9E-80 579.5 30.4 438 1-451 307-756 (790)
35 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.3E-71 2E-75 588.7 52.4 438 2-448 102-551 (555)
36 COG5265 ATM1 ABC-type transpor 100.0 5.5E-72 1.2E-76 546.8 35.6 443 2-452 31-482 (497)
37 PTZ00265 multidrug resistance 100.0 7.8E-70 1.7E-74 628.8 54.1 438 2-443 146-655 (1466)
38 COG4618 ArpD ABC-type protease 100.0 8E-68 1.7E-72 528.2 39.7 429 18-453 124-557 (580)
39 PLN03232 ABC transporter C fam 100.0 9.3E-67 2E-71 607.7 54.2 429 2-451 390-823 (1495)
40 PRK10522 multidrug transporter 100.0 3.4E-66 7.5E-71 553.0 51.9 431 2-450 97-532 (547)
41 PLN03130 ABC transporter C fam 100.0 2.4E-66 5.1E-71 604.9 54.9 431 2-451 390-823 (1622)
42 TIGR00954 3a01203 Peroxysomal 100.0 2E-61 4.3E-66 524.5 49.2 424 2-442 188-653 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 8.7E-61 1.9E-65 558.4 56.0 433 2-451 407-845 (1522)
44 KOG0054 Multidrug resistance-a 100.0 1E-60 2.3E-65 533.2 51.9 429 6-451 295-726 (1381)
45 TIGR01271 CFTR_protein cystic 100.0 2.4E-58 5.2E-63 536.5 54.8 426 3-451 172-631 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 1.5E-56 3.3E-61 522.0 52.5 431 7-451 341-865 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.6E-54 5.7E-59 421.1 25.9 220 231-451 1-220 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 1.2E-53 2.5E-58 386.8 21.8 206 232-450 2-219 (240)
49 COG1135 AbcC ABC-type metal io 100.0 2.4E-52 5.2E-57 396.4 20.0 209 233-452 2-227 (339)
50 cd03244 ABCC_MRP_domain2 Domai 100.0 1.7E-50 3.6E-55 383.5 26.7 220 231-450 1-220 (221)
51 PRK14257 phosphate ABC transpo 100.0 1E-50 2.2E-55 405.7 25.1 218 227-451 75-308 (329)
52 COG1117 PstB ABC-type phosphat 100.0 1.9E-51 4.1E-56 370.8 17.5 212 232-452 7-233 (253)
53 COG1125 OpuBA ABC-type proline 100.0 2.8E-51 6.1E-56 378.5 17.2 205 233-450 2-219 (309)
54 cd03252 ABCC_Hemolysin The ABC 100.0 8E-50 1.7E-54 382.9 25.7 218 233-450 1-219 (237)
55 cd03288 ABCC_SUR2 The SUR doma 100.0 2.1E-49 4.6E-54 384.5 27.8 224 229-452 16-239 (257)
56 cd03245 ABCC_bacteriocin_expor 100.0 2.7E-49 5.8E-54 375.0 26.2 218 232-449 2-220 (220)
57 cd03254 ABCC_Glucan_exporter_l 100.0 4.3E-49 9.4E-54 375.8 25.4 218 232-450 2-220 (229)
58 cd03251 ABCC_MsbA MsbA is an e 100.0 6.6E-49 1.4E-53 375.8 25.8 218 233-450 1-219 (234)
59 COG1136 SalX ABC-type antimicr 100.0 4.6E-49 1E-53 366.6 23.9 205 233-448 2-223 (226)
60 COG1120 FepC ABC-type cobalami 100.0 3.1E-49 6.7E-54 374.7 21.2 207 232-451 2-223 (258)
61 COG1116 TauB ABC-type nitrate/ 100.0 2.6E-49 5.6E-54 368.6 19.9 196 232-445 3-211 (248)
62 cd03253 ABCC_ATM1_transporter 100.0 2.1E-48 4.6E-53 372.8 25.6 217 233-450 1-218 (236)
63 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.7E-48 8.1E-53 363.8 25.5 205 228-450 2-206 (207)
64 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.9E-48 6.2E-53 372.4 25.3 218 233-450 1-220 (238)
65 COG2884 FtsE Predicted ATPase 100.0 4.8E-49 1E-53 349.1 17.6 206 233-450 2-220 (223)
66 COG1124 DppF ABC-type dipeptid 100.0 1.4E-48 3.1E-53 360.5 20.4 209 232-451 3-226 (252)
67 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.6E-48 5.6E-53 366.6 22.0 203 232-451 4-222 (254)
68 TIGR02314 ABC_MetN D-methionin 100.0 1.7E-48 3.6E-53 390.6 21.8 208 233-451 2-225 (343)
69 COG1127 Ttg2A ABC-type transpo 100.0 2.6E-48 5.6E-53 357.2 20.9 206 232-450 8-229 (263)
70 COG3839 MalK ABC-type sugar tr 100.0 3.7E-48 8.1E-53 380.7 21.7 205 232-451 3-218 (338)
71 cd03248 ABCC_TAP TAP, the Tran 100.0 1.1E-47 2.3E-52 365.6 24.1 216 230-445 9-226 (226)
72 TIGR00960 3a0501s02 Type II (G 100.0 3.5E-48 7.6E-53 366.4 20.0 202 233-445 2-216 (216)
73 cd03261 ABC_Org_Solvent_Resist 100.0 8.1E-48 1.8E-52 368.6 21.8 205 233-450 1-220 (235)
74 COG1122 CbiO ABC-type cobalt t 100.0 8.3E-48 1.8E-52 364.5 21.1 207 232-450 3-222 (235)
75 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-47 2.3E-52 338.1 19.2 201 233-450 2-213 (231)
76 cd03260 ABC_PstB_phosphate_tra 100.0 1.5E-47 3.3E-52 364.7 22.1 207 233-450 1-223 (227)
77 cd03259 ABC_Carb_Solutes_like 100.0 1.6E-47 3.5E-52 361.1 20.9 202 233-449 1-213 (213)
78 PRK13631 cbiO cobalt transport 100.0 3.8E-47 8.2E-52 378.7 24.3 215 231-452 20-261 (320)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.4E-47 3E-52 362.7 19.9 202 233-445 1-218 (218)
80 PRK13650 cbiO cobalt transport 100.0 3.5E-47 7.5E-52 373.1 22.8 208 232-450 4-223 (279)
81 cd03250 ABCC_MRP_domain1 Domai 100.0 6.7E-47 1.5E-51 354.5 23.4 199 233-444 1-204 (204)
82 PRK11629 lolD lipoprotein tran 100.0 4.3E-47 9.4E-52 363.1 22.4 208 232-450 5-228 (233)
83 PRK13647 cbiO cobalt transport 100.0 4.3E-47 9.2E-52 371.5 22.6 208 232-451 4-222 (274)
84 cd03263 ABC_subfamily_A The AB 100.0 4.5E-47 9.8E-52 359.7 21.8 207 233-451 1-216 (220)
85 cd03226 ABC_cobalt_CbiO_domain 100.0 4.3E-47 9.3E-52 356.1 20.7 198 234-446 1-205 (205)
86 COG3638 ABC-type phosphate/pho 100.0 3.7E-47 7.9E-52 348.7 19.6 208 232-451 3-232 (258)
87 cd03264 ABC_drug_resistance_li 100.0 5.4E-47 1.2E-51 357.0 21.3 202 233-449 1-211 (211)
88 cd03266 ABC_NatA_sodium_export 100.0 5.9E-47 1.3E-51 358.4 21.7 205 233-449 2-218 (218)
89 cd03256 ABC_PhnC_transporter A 100.0 7.5E-47 1.6E-51 363.1 22.0 207 233-451 1-229 (241)
90 cd03268 ABC_BcrA_bacitracin_re 100.0 9.9E-47 2.1E-51 354.4 21.6 202 233-449 1-208 (208)
91 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-46 3.2E-51 379.3 23.8 205 232-450 3-218 (356)
92 PRK11153 metN DL-methionine tr 100.0 8.2E-47 1.8E-51 380.2 21.8 208 233-451 2-225 (343)
93 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-46 2.4E-51 357.4 21.2 203 233-446 2-220 (221)
94 cd03247 ABCC_cytochrome_bd The 100.0 1.4E-46 3E-51 344.9 21.2 178 233-449 1-178 (178)
95 TIGR02315 ABC_phnC phosphonate 100.0 1.5E-46 3.3E-51 361.5 22.5 207 233-451 2-230 (243)
96 cd03225 ABC_cobalt_CbiO_domain 100.0 8.7E-47 1.9E-51 355.5 20.2 200 234-444 1-211 (211)
97 PRK13635 cbiO cobalt transport 100.0 1.7E-46 3.6E-51 368.2 23.0 208 232-450 5-223 (279)
98 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-46 2.7E-51 360.5 21.5 209 233-450 1-226 (236)
99 COG3842 PotA ABC-type spermidi 100.0 5.4E-47 1.2E-51 374.4 19.4 204 232-450 5-220 (352)
100 PRK13637 cbiO cobalt transport 100.0 1.4E-46 2.9E-51 370.3 22.0 211 233-452 3-230 (287)
101 PRK14269 phosphate ABC transpo 100.0 2E-46 4.3E-51 361.4 22.6 211 232-451 2-225 (246)
102 TIGR02673 FtsE cell division A 100.0 1.1E-46 2.4E-51 355.6 20.0 200 233-444 2-214 (214)
103 PRK14250 phosphate ABC transpo 100.0 3.2E-46 6.9E-51 358.9 23.3 208 232-451 3-216 (241)
104 cd03296 ABC_CysA_sulfate_impor 100.0 2.8E-46 6.1E-51 358.8 22.8 204 232-450 2-220 (239)
105 cd03301 ABC_MalK_N The N-termi 100.0 1.7E-46 3.6E-51 354.1 20.6 202 233-449 1-213 (213)
106 cd03290 ABCC_SUR1_N The SUR do 100.0 4.2E-46 9.1E-51 352.7 23.4 210 234-444 2-218 (218)
107 cd03258 ABC_MetN_methionine_tr 100.0 2.3E-46 4.9E-51 358.1 21.5 208 233-451 2-225 (233)
108 cd03292 ABC_FtsE_transporter F 100.0 1.9E-46 4.2E-51 353.8 20.8 201 233-445 1-214 (214)
109 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.9E-46 4.1E-51 355.6 20.8 202 233-450 1-217 (220)
110 PRK13643 cbiO cobalt transport 100.0 3E-46 6.6E-51 368.0 22.6 209 233-451 2-228 (288)
111 TIGR00972 3a0107s01c2 phosphat 100.0 3.7E-46 8.1E-51 359.7 22.6 210 233-451 2-227 (247)
112 PRK10584 putative ABC transpor 100.0 5.3E-46 1.1E-50 354.4 23.2 206 232-448 6-227 (228)
113 PRK11432 fbpC ferric transport 100.0 3.2E-46 7E-51 375.8 22.7 205 232-451 6-221 (351)
114 cd03224 ABC_TM1139_LivF_branch 100.0 4.4E-46 9.5E-51 353.4 22.3 210 233-450 1-215 (222)
115 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.4E-46 5.2E-51 360.0 20.2 209 233-451 1-220 (242)
116 cd03246 ABCC_Protease_Secretio 100.0 4.6E-46 9.9E-51 339.9 21.0 172 233-445 1-173 (173)
117 PRK14242 phosphate transporter 100.0 6.5E-46 1.4E-50 359.3 22.7 211 232-451 6-232 (253)
118 PRK13537 nodulation ABC transp 100.0 4.1E-46 8.9E-51 369.7 21.8 206 232-451 7-222 (306)
119 cd03235 ABC_Metallic_Cations A 100.0 3.5E-46 7.6E-51 352.0 20.1 197 234-449 1-213 (213)
120 PRK13632 cbiO cobalt transport 100.0 6.6E-46 1.4E-50 362.7 22.7 208 232-450 7-225 (271)
121 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.9E-46 1.9E-50 348.7 22.7 200 233-449 1-211 (211)
122 PRK13646 cbiO cobalt transport 100.0 4.9E-46 1.1E-50 366.2 21.8 212 233-451 3-230 (286)
123 PRK13636 cbiO cobalt transport 100.0 7E-46 1.5E-50 364.6 22.8 207 232-450 5-225 (283)
124 PRK10744 pstB phosphate transp 100.0 9.8E-46 2.1E-50 359.4 23.6 212 230-450 11-238 (260)
125 cd03257 ABC_NikE_OppD_transpor 100.0 4.4E-46 9.6E-51 354.7 20.8 210 233-449 2-228 (228)
126 PRK13634 cbiO cobalt transport 100.0 5.7E-46 1.2E-50 366.4 22.1 208 233-450 3-229 (290)
127 PRK10908 cell division protein 100.0 7.4E-46 1.6E-50 352.0 22.0 203 233-447 2-217 (222)
128 cd03265 ABC_DrrA DrrA is the A 100.0 8.5E-46 1.8E-50 351.1 22.3 204 233-450 1-215 (220)
129 PRK13644 cbiO cobalt transport 100.0 9.8E-46 2.1E-50 361.9 23.3 207 233-451 2-219 (274)
130 PRK13640 cbiO cobalt transport 100.0 9.7E-46 2.1E-50 363.4 23.2 210 232-452 5-228 (282)
131 PRK13651 cobalt transporter AT 100.0 8E-46 1.7E-50 367.1 22.6 208 233-451 3-249 (305)
132 TIGR03265 PhnT2 putative 2-ami 100.0 6.3E-46 1.4E-50 374.3 21.7 205 232-451 4-219 (353)
133 PRK14273 phosphate ABC transpo 100.0 1.8E-45 3.9E-50 356.4 23.8 211 232-451 7-233 (254)
134 PRK09536 btuD corrinoid ABC tr 100.0 1E-45 2.3E-50 376.9 23.1 207 232-451 3-223 (402)
135 PRK11247 ssuB aliphatic sulfon 100.0 1.8E-45 4E-50 356.2 23.7 201 232-450 12-217 (257)
136 cd03218 ABC_YhbG The ABC trans 100.0 9.4E-46 2E-50 353.5 21.4 210 233-451 1-217 (232)
137 PRK13652 cbiO cobalt transport 100.0 1.5E-45 3.2E-50 361.3 23.2 207 232-450 3-221 (277)
138 cd03262 ABC_HisP_GlnQ_permease 100.0 8.4E-46 1.8E-50 349.3 20.2 200 233-445 1-213 (213)
139 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-45 2.9E-50 353.4 22.0 209 233-451 2-216 (236)
140 COG4615 PvdE ABC-type sideroph 100.0 1.1E-43 2.4E-48 344.8 35.2 426 4-449 99-530 (546)
141 PRK10575 iron-hydroxamate tran 100.0 1.5E-45 3.2E-50 359.2 22.4 207 232-451 11-232 (265)
142 PRK11231 fecE iron-dicitrate t 100.0 1.6E-45 3.4E-50 357.0 22.4 205 233-450 3-221 (255)
143 TIGR03411 urea_trans_UrtD urea 100.0 1.7E-45 3.6E-50 354.1 22.4 214 233-450 3-225 (242)
144 cd03269 ABC_putative_ATPase Th 100.0 8.2E-46 1.8E-50 348.7 19.8 200 233-449 1-210 (210)
145 PRK13648 cbiO cobalt transport 100.0 1.6E-45 3.4E-50 359.7 22.4 209 232-451 7-226 (269)
146 PRK10851 sulfate/thiosulfate t 100.0 1.7E-45 3.6E-50 371.2 23.2 205 232-451 2-221 (353)
147 PRK14235 phosphate transporter 100.0 2.2E-45 4.7E-50 358.3 23.1 213 230-451 17-246 (267)
148 PRK09493 glnQ glutamine ABC tr 100.0 2.1E-45 4.6E-50 352.9 22.4 206 233-451 2-220 (240)
149 PRK14259 phosphate ABC transpo 100.0 3.7E-45 8E-50 357.0 24.4 211 231-450 12-247 (269)
150 PRK14247 phosphate ABC transpo 100.0 2E-45 4.3E-50 355.3 22.2 211 232-451 3-229 (250)
151 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.3E-44 2.9E-49 354.1 28.1 205 230-451 37-242 (282)
152 TIGR03258 PhnT 2-aminoethylpho 100.0 1.3E-45 2.9E-50 372.5 21.6 206 230-450 3-222 (362)
153 COG1118 CysA ABC-type sulfate/ 100.0 5.6E-46 1.2E-50 352.2 17.6 205 232-451 2-222 (345)
154 TIGR01186 proV glycine betaine 100.0 7.3E-46 1.6E-50 373.6 19.5 193 247-450 6-213 (363)
155 PRK14267 phosphate ABC transpo 100.0 1.8E-45 3.9E-50 356.2 21.3 211 232-451 4-232 (253)
156 PRK13642 cbiO cobalt transport 100.0 2.9E-45 6.4E-50 359.2 23.1 209 232-451 4-224 (277)
157 PRK11000 maltose/maltodextrin 100.0 1.9E-45 4.2E-50 373.4 22.5 205 232-451 3-218 (369)
158 COG1131 CcmA ABC-type multidru 100.0 1.2E-45 2.6E-50 363.4 20.2 206 232-450 4-220 (293)
159 PRK09452 potA putrescine/sperm 100.0 3.1E-45 6.7E-50 371.2 23.7 205 232-451 14-229 (375)
160 PRK11124 artP arginine transpo 100.0 2.8E-45 6.2E-50 352.5 22.2 207 232-451 2-225 (242)
161 TIGR03005 ectoine_ehuA ectoine 100.0 3E-45 6.4E-50 354.5 22.5 207 233-452 1-232 (252)
162 TIGR03522 GldA_ABC_ATP gliding 100.0 2.2E-45 4.9E-50 364.0 22.1 206 232-451 2-216 (301)
163 PRK15079 oligopeptide ABC tran 100.0 2.8E-45 6E-50 366.7 22.9 209 232-451 8-246 (331)
164 TIGR03410 urea_trans_UrtE urea 100.0 3.2E-45 6.8E-50 349.5 22.2 208 233-452 1-217 (230)
165 TIGR01288 nodI ATP-binding ABC 100.0 2.6E-45 5.7E-50 364.0 22.4 206 232-451 4-219 (303)
166 PRK13633 cobalt transporter AT 100.0 4.1E-45 8.9E-50 358.7 23.2 209 232-451 4-228 (280)
167 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.3E-45 2.8E-50 360.2 19.5 204 234-450 26-244 (269)
168 PRK13548 hmuV hemin importer A 100.0 7.4E-45 1.6E-49 352.8 24.5 205 233-450 3-224 (258)
169 PRK10253 iron-enterobactin tra 100.0 4E-45 8.7E-50 356.1 22.6 207 231-450 6-227 (265)
170 PRK11831 putative ABC transpor 100.0 3E-45 6.4E-50 357.7 21.6 206 232-450 7-227 (269)
171 PRK13649 cbiO cobalt transport 100.0 2.8E-45 6.2E-50 360.0 21.5 208 233-450 3-228 (280)
172 PRK13641 cbiO cobalt transport 100.0 4E-45 8.7E-50 359.9 22.6 210 232-451 2-229 (287)
173 PRK13536 nodulation factor exp 100.0 2.8E-45 6.2E-50 367.7 21.8 206 232-451 41-256 (340)
174 PRK14240 phosphate transporter 100.0 4.8E-45 1E-49 352.6 22.5 211 231-450 2-228 (250)
175 PRK14274 phosphate ABC transpo 100.0 5.5E-45 1.2E-49 354.0 22.9 211 232-451 12-238 (259)
176 PRK11614 livF leucine/isoleuci 100.0 7.9E-45 1.7E-49 348.3 23.7 211 232-450 5-220 (237)
177 PRK14237 phosphate transporter 100.0 6.5E-45 1.4E-49 354.9 23.4 212 231-451 19-246 (267)
178 TIGR01277 thiQ thiamine ABC tr 100.0 5.4E-45 1.2E-49 343.9 22.1 201 233-450 1-212 (213)
179 TIGR02769 nickel_nikE nickel i 100.0 5.1E-45 1.1E-49 355.4 22.5 209 233-451 3-235 (265)
180 PRK13645 cbiO cobalt transport 100.0 4.7E-45 1E-49 360.0 22.2 211 231-451 5-235 (289)
181 PRK10895 lipopolysaccharide AB 100.0 8.7E-45 1.9E-49 348.9 23.4 211 232-451 3-221 (241)
182 PRK14249 phosphate ABC transpo 100.0 1E-44 2.2E-49 350.5 23.9 211 232-451 4-230 (251)
183 PRK13638 cbiO cobalt transport 100.0 5.7E-45 1.2E-49 356.1 22.3 206 233-451 2-220 (271)
184 PRK14248 phosphate ABC transpo 100.0 5.8E-45 1.3E-49 355.6 22.1 211 232-451 21-247 (268)
185 PRK14245 phosphate ABC transpo 100.0 4.9E-45 1.1E-49 352.5 21.2 211 232-451 3-229 (250)
186 PRK10619 histidine/lysine/argi 100.0 7.5E-45 1.6E-49 352.7 22.5 208 231-450 4-235 (257)
187 PRK10247 putative ABC transpor 100.0 6.3E-45 1.4E-49 346.3 21.5 208 232-451 7-222 (225)
188 PRK14239 phosphate transporter 100.0 6.3E-45 1.4E-49 352.2 21.8 211 232-451 5-231 (252)
189 PRK11264 putative amino-acid A 100.0 6E-45 1.3E-49 351.9 21.6 210 233-451 4-228 (250)
190 TIGR03873 F420-0_ABC_ATP propo 100.0 7.9E-45 1.7E-49 352.3 22.5 205 233-450 2-220 (256)
191 PRK13639 cbiO cobalt transport 100.0 5.9E-45 1.3E-49 356.7 21.5 206 233-450 2-220 (275)
192 PRK14268 phosphate ABC transpo 100.0 7.8E-45 1.7E-49 352.7 22.1 212 232-452 12-238 (258)
193 PRK11308 dppF dipeptide transp 100.0 1E-44 2.2E-49 362.3 23.4 209 232-451 5-239 (327)
194 PRK11300 livG leucine/isoleuci 100.0 1.3E-44 2.7E-49 350.6 23.3 214 232-451 5-238 (255)
195 PRK14256 phosphate ABC transpo 100.0 1.1E-44 2.4E-49 350.5 22.8 212 231-451 3-231 (252)
196 PRK14251 phosphate ABC transpo 100.0 8.9E-45 1.9E-49 350.9 22.0 211 232-451 4-230 (251)
197 cd03228 ABCC_MRP_Like The MRP 100.0 1E-44 2.2E-49 330.4 20.9 171 233-444 1-171 (171)
198 PRK10771 thiQ thiamine transpo 100.0 3.2E-44 7E-49 343.0 25.1 202 233-451 2-214 (232)
199 COG4178 ABC-type uncharacteriz 100.0 7.2E-42 1.6E-46 355.6 44.6 410 14-442 152-588 (604)
200 PRK14236 phosphate transporter 100.0 1.6E-44 3.4E-49 353.2 23.2 212 230-450 23-250 (272)
201 PRK14253 phosphate ABC transpo 100.0 1.5E-44 3.3E-49 348.9 22.6 211 232-451 3-228 (249)
202 PRK14244 phosphate ABC transpo 100.0 5.9E-45 1.3E-49 352.2 19.7 210 233-451 6-232 (251)
203 PRK11607 potG putrescine trans 100.0 1.1E-44 2.4E-49 367.7 22.5 205 231-450 18-233 (377)
204 PRK14270 phosphate ABC transpo 100.0 1.8E-44 3.9E-49 348.8 22.8 211 232-451 4-230 (251)
205 TIGR02982 heterocyst_DevA ABC 100.0 9.9E-45 2.1E-49 343.8 20.3 202 233-445 2-219 (220)
206 PRK14261 phosphate ABC transpo 100.0 1.9E-44 4.2E-49 349.0 22.7 213 232-453 6-234 (253)
207 PRK14243 phosphate transporter 100.0 2.7E-44 5.9E-49 350.0 23.7 211 232-451 10-243 (264)
208 PRK11022 dppD dipeptide transp 100.0 1.8E-44 4E-49 360.5 23.0 211 233-451 4-238 (326)
209 TIGR01978 sufC FeS assembly AT 100.0 1.3E-44 2.8E-49 348.0 20.9 208 233-452 1-230 (243)
210 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-44 2.4E-49 346.2 20.1 204 233-451 1-215 (232)
211 PRK10070 glycine betaine trans 100.0 1.3E-44 2.8E-49 368.6 21.8 191 249-450 43-248 (400)
212 PRK14262 phosphate ABC transpo 100.0 1.7E-44 3.7E-49 348.7 21.5 211 232-451 3-229 (250)
213 PRK14238 phosphate transporter 100.0 3.3E-44 7.2E-49 350.7 23.7 213 231-452 23-251 (271)
214 TIGR00968 3a0106s01 sulfate AB 100.0 2.5E-44 5.3E-49 344.9 22.2 205 233-452 1-216 (237)
215 TIGR01188 drrA daunorubicin re 100.0 1.1E-44 2.4E-49 359.3 20.3 197 241-451 2-208 (302)
216 PRK11248 tauB taurine transpor 100.0 2.7E-44 5.9E-49 348.1 22.4 200 233-450 2-214 (255)
217 PRK14254 phosphate ABC transpo 100.0 3.1E-44 6.7E-49 353.1 23.0 212 231-451 38-264 (285)
218 PRK14252 phosphate ABC transpo 100.0 2.9E-44 6.3E-49 350.1 22.2 214 229-451 13-244 (265)
219 PRK14271 phosphate ABC transpo 100.0 5.3E-44 1.1E-48 349.9 23.9 211 232-451 21-246 (276)
220 PRK14260 phosphate ABC transpo 100.0 3.1E-44 6.6E-49 348.8 22.0 210 232-450 7-237 (259)
221 cd03234 ABCG_White The White s 100.0 2.2E-44 4.9E-49 342.8 20.3 212 233-449 4-226 (226)
222 cd03229 ABC_Class3 This class 100.0 3.7E-44 8.1E-49 328.8 20.7 172 233-444 1-178 (178)
223 PRK13547 hmuV hemin importer A 100.0 6.8E-44 1.5E-48 348.0 23.6 205 233-450 2-238 (272)
224 cd03230 ABC_DR_subfamily_A Thi 100.0 3.7E-44 8E-49 327.3 20.4 170 233-445 1-173 (173)
225 PRK14265 phosphate ABC transpo 100.0 7.5E-44 1.6E-48 348.6 23.8 212 231-451 19-253 (274)
226 PRK14241 phosphate transporter 100.0 4.2E-44 9.1E-49 347.6 21.8 212 232-452 4-238 (258)
227 PRK15093 antimicrobial peptide 100.0 3.8E-44 8.2E-49 359.2 22.0 212 232-451 3-243 (330)
228 PRK09473 oppD oligopeptide tra 100.0 6.2E-44 1.3E-48 357.1 23.5 212 232-451 12-246 (330)
229 PRK09984 phosphonate/organopho 100.0 6.9E-44 1.5E-48 346.9 22.5 207 232-451 4-237 (262)
230 PRK14275 phosphate ABC transpo 100.0 5.1E-44 1.1E-48 351.8 21.6 212 231-451 38-265 (286)
231 cd03297 ABC_ModC_molybdenum_tr 100.0 5.3E-44 1.1E-48 337.4 20.8 197 237-449 5-214 (214)
232 cd03233 ABC_PDR_domain1 The pl 100.0 6.5E-44 1.4E-48 333.7 21.1 189 233-449 4-202 (202)
233 PRK15112 antimicrobial peptide 100.0 5.5E-44 1.2E-48 348.4 21.4 208 232-450 4-233 (267)
234 PRK14263 phosphate ABC transpo 100.0 8.3E-44 1.8E-48 345.9 22.5 211 232-451 8-240 (261)
235 PRK14255 phosphate ABC transpo 100.0 6.2E-44 1.3E-48 345.3 21.4 211 232-451 5-231 (252)
236 TIGR03740 galliderm_ABC gallid 100.0 9.1E-44 2E-48 337.9 22.2 202 233-451 1-208 (223)
237 PRK14266 phosphate ABC transpo 100.0 7.4E-44 1.6E-48 344.3 21.8 211 232-451 3-229 (250)
238 COG4555 NatA ABC-type Na+ tran 100.0 2.4E-44 5.3E-49 321.8 16.7 206 233-451 2-217 (245)
239 cd03299 ABC_ModC_like Archeal 100.0 9.2E-44 2E-48 340.5 21.3 202 233-450 1-213 (235)
240 PRK14272 phosphate ABC transpo 100.0 1.2E-43 2.5E-48 343.3 22.1 211 232-451 4-231 (252)
241 PRK14258 phosphate ABC transpo 100.0 1.2E-43 2.7E-48 344.8 22.1 211 231-450 6-239 (261)
242 PRK11144 modC molybdate transp 100.0 1.3E-43 2.7E-48 358.3 22.6 202 233-450 2-212 (352)
243 COG0410 LivF ABC-type branched 100.0 1.4E-43 3E-48 325.3 20.6 212 232-450 3-220 (237)
244 cd03214 ABC_Iron-Siderophores_ 100.0 1.1E-43 2.3E-48 326.3 19.7 177 234-449 1-180 (180)
245 TIGR03415 ABC_choXWV_ATP choli 100.0 9.7E-44 2.1E-48 359.8 21.2 200 238-450 30-248 (382)
246 PRK14264 phosphate ABC transpo 100.0 2E-43 4.4E-48 350.5 23.1 212 231-451 44-284 (305)
247 cd03213 ABCG_EPDR ABCG transpo 100.0 1.2E-43 2.7E-48 329.8 20.0 182 232-449 3-194 (194)
248 PRK11701 phnK phosphonate C-P 100.0 3.6E-43 7.9E-48 341.1 23.8 211 232-451 6-236 (258)
249 COG1137 YhbG ABC-type (unclass 100.0 7.5E-45 1.6E-49 324.7 10.9 215 232-450 4-222 (243)
250 TIGR03608 L_ocin_972_ABC putat 100.0 9.6E-44 2.1E-48 333.5 18.7 193 235-440 1-206 (206)
251 cd03232 ABC_PDR_domain2 The pl 100.0 1.3E-43 2.8E-48 329.1 19.2 181 232-449 3-192 (192)
252 cd03215 ABC_Carb_Monos_II This 100.0 1.9E-43 4.2E-48 325.2 19.1 172 232-445 4-182 (182)
253 cd03223 ABCD_peroxisomal_ALDP 100.0 3.6E-43 7.7E-48 318.6 20.1 164 233-444 1-164 (166)
254 PRK14246 phosphate ABC transpo 100.0 4.8E-43 1E-47 339.8 21.8 211 232-451 10-236 (257)
255 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.6E-43 1.2E-47 326.9 21.4 182 233-451 1-189 (200)
256 PRK10419 nikE nickel transport 100.0 6E-43 1.3E-47 341.2 22.2 213 232-451 3-236 (268)
257 COG4619 ABC-type uncharacteriz 100.0 1.3E-43 2.8E-48 308.3 15.5 203 234-448 5-215 (223)
258 TIGR02142 modC_ABC molybdenum 100.0 4E-43 8.6E-48 355.1 21.7 199 237-450 4-215 (354)
259 PRK15056 manganese/iron transp 100.0 8.3E-43 1.8E-47 341.0 22.9 203 232-450 6-224 (272)
260 PRK10418 nikD nickel transport 100.0 5.4E-43 1.2E-47 339.0 21.3 206 232-450 4-224 (254)
261 COG1123 ATPase components of v 100.0 3E-43 6.5E-48 361.7 20.5 211 231-452 279-515 (539)
262 cd03267 ABC_NatA_like Similar 100.0 6.2E-43 1.4E-47 335.0 19.9 191 247-449 34-236 (236)
263 CHL00131 ycf16 sulfate ABC tra 100.0 1.4E-42 2.9E-47 335.8 22.4 208 232-451 7-236 (252)
264 cd03231 ABC_CcmA_heme_exporter 100.0 1.5E-42 3.2E-47 324.4 21.6 194 233-440 1-198 (201)
265 PRK13538 cytochrome c biogenes 100.0 1.1E-42 2.3E-47 326.1 20.6 194 233-440 2-202 (204)
266 cd03216 ABC_Carb_Monos_I This 100.0 2.4E-42 5.1E-47 312.3 21.6 159 233-447 1-162 (163)
267 PRK09544 znuC high-affinity zi 100.0 2E-42 4.2E-47 334.2 22.3 194 232-450 4-203 (251)
268 TIGR02323 CP_lyasePhnK phospho 100.0 1.6E-42 3.5E-47 335.6 21.8 211 232-451 3-233 (253)
269 PRK09580 sufC cysteine desulfu 100.0 3.5E-42 7.6E-47 332.1 23.9 221 233-457 2-236 (248)
270 PRK15439 autoinducer 2 ABC tra 100.0 2.4E-42 5.1E-47 366.1 24.1 207 232-451 11-224 (510)
271 PRK13549 xylose transporter AT 100.0 1.8E-42 3.9E-47 366.9 22.4 210 232-450 5-226 (506)
272 PRK10762 D-ribose transporter 100.0 1.9E-42 4.1E-47 366.4 22.1 210 232-450 4-224 (501)
273 PRK03695 vitamin B12-transport 100.0 3.5E-42 7.6E-47 332.1 22.0 200 234-451 2-217 (248)
274 TIGR01184 ntrCD nitrate transp 100.0 2.3E-42 4.9E-47 329.8 20.4 185 250-450 1-198 (230)
275 PRK13540 cytochrome c biogenes 100.0 2.6E-42 5.5E-47 322.5 19.9 193 233-439 2-198 (200)
276 COG0444 DppD ABC-type dipeptid 100.0 1.7E-42 3.7E-47 333.5 18.9 208 233-451 2-238 (316)
277 COG0411 LivG ABC-type branched 100.0 4.8E-43 1E-47 324.1 14.2 216 233-454 5-237 (250)
278 PRK09700 D-allose transporter 100.0 2.3E-42 4.9E-47 366.6 21.6 210 232-450 5-228 (510)
279 PRK13543 cytochrome c biogenes 100.0 6.5E-42 1.4E-46 323.2 21.0 195 232-442 11-212 (214)
280 PRK10261 glutathione transport 100.0 5.4E-42 1.2E-46 370.9 22.8 209 232-451 313-548 (623)
281 PRK11288 araG L-arabinose tran 100.0 5.4E-42 1.2E-46 362.9 22.1 210 232-450 4-223 (501)
282 PRK13539 cytochrome c biogenes 100.0 1.4E-41 2.9E-46 319.3 21.5 193 233-442 3-200 (207)
283 PRK10938 putative molybdenum t 100.0 9.5E-42 2.1E-46 360.3 22.7 204 233-450 4-218 (490)
284 TIGR01189 ccmA heme ABC export 100.0 9.2E-42 2E-46 318.3 19.2 192 233-439 1-197 (198)
285 COG4181 Predicted ABC-type tra 100.0 7.4E-42 1.6E-46 298.2 16.8 206 232-448 6-227 (228)
286 PRK10982 galactose/methyl gala 100.0 1.6E-41 3.4E-46 358.6 22.1 208 235-451 1-218 (491)
287 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-41 4.9E-46 358.3 22.4 209 233-450 2-224 (500)
288 TIGR02324 CP_lyasePhnL phospho 100.0 2.1E-41 4.6E-46 321.8 19.9 198 233-440 2-222 (224)
289 COG4175 ProV ABC-type proline/ 100.0 1.5E-41 3.1E-46 322.5 18.6 208 232-450 4-248 (386)
290 COG1123 ATPase components of v 100.0 1.7E-41 3.6E-46 348.8 20.5 213 232-453 5-241 (539)
291 TIGR02770 nickel_nikD nickel i 100.0 1.3E-41 2.8E-46 324.7 18.2 192 249-450 1-209 (230)
292 PRK15134 microcin C ABC transp 100.0 3.8E-41 8.2E-46 358.7 22.0 212 232-451 5-241 (529)
293 COG4559 ABC-type hemin transpo 100.0 4.4E-41 9.5E-46 303.2 18.9 206 233-451 2-225 (259)
294 TIGR01166 cbiO cobalt transpor 100.0 2E-41 4.4E-46 313.9 17.1 173 247-430 5-189 (190)
295 PRK09700 D-allose transporter 100.0 3.8E-41 8.3E-46 357.3 20.7 215 232-457 265-502 (510)
296 COG1129 MglA ABC-type sugar tr 100.0 8.8E-41 1.9E-45 341.4 22.2 210 232-450 8-228 (500)
297 PRK15134 microcin C ABC transp 100.0 4E-41 8.8E-46 358.5 20.1 209 232-451 275-510 (529)
298 PRK10261 glutathione transport 100.0 5.5E-41 1.2E-45 363.0 21.2 212 232-451 12-253 (623)
299 COG4172 ABC-type uncharacteriz 100.0 1.1E-40 2.4E-45 325.0 20.9 210 230-451 274-511 (534)
300 PRK13549 xylose transporter AT 100.0 5.6E-41 1.2E-45 355.5 20.0 212 232-450 259-488 (506)
301 TIGR03269 met_CoM_red_A2 methy 100.0 6.7E-41 1.5E-45 356.2 20.7 214 232-451 279-512 (520)
302 COG4608 AppF ABC-type oligopep 100.0 4E-41 8.7E-46 317.6 16.7 180 232-451 4-194 (268)
303 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1E-40 2.2E-45 317.1 19.3 193 233-449 23-224 (224)
304 PRK13541 cytochrome c biogenes 100.0 1E-40 2.2E-45 310.5 18.7 188 233-438 2-193 (195)
305 TIGR01257 rim_protein retinal- 100.0 1.7E-40 3.7E-45 385.9 24.4 214 231-456 927-1149(2272)
306 PRK10535 macrolide transporter 100.0 2.2E-40 4.8E-45 359.5 22.9 209 232-451 4-227 (648)
307 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-40 2.5E-45 354.4 19.9 205 233-450 1-252 (520)
308 TIGR02633 xylG D-xylose ABC tr 100.0 4.4E-40 9.6E-45 348.4 22.0 211 232-449 257-485 (500)
309 COG4161 ArtP ABC-type arginine 100.0 1.7E-40 3.7E-45 287.0 15.0 210 232-454 2-228 (242)
310 TIGR03771 anch_rpt_ABC anchore 100.0 3E-40 6.6E-45 313.7 17.5 180 255-451 1-196 (223)
311 PLN03211 ABC transporter G-25; 100.0 2.2E-39 4.7E-44 350.7 24.5 194 247-451 81-291 (659)
312 PRK13546 teichoic acids export 100.0 1.7E-39 3.7E-44 315.6 21.3 195 232-450 4-226 (264)
313 COG3845 ABC-type uncharacteriz 100.0 1.3E-39 2.8E-44 326.5 20.5 207 232-447 4-220 (501)
314 PRK10762 D-ribose transporter 100.0 7.3E-40 1.6E-44 346.7 19.5 205 232-450 257-478 (501)
315 COG4525 TauB ABC-type taurine 100.0 7.9E-40 1.7E-44 291.2 15.9 204 233-452 4-221 (259)
316 PRK11288 araG L-arabinose tran 100.0 1.2E-39 2.5E-44 345.1 20.1 213 232-457 257-488 (501)
317 TIGR01257 rim_protein retinal- 100.0 2.4E-39 5.1E-44 376.4 23.8 209 231-451 1936-2154(2272)
318 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.8E-39 1E-43 284.6 18.9 143 233-444 1-144 (144)
319 cd03236 ABC_RNaseL_inhibitor_d 100.0 9.9E-40 2.1E-44 315.5 15.0 201 236-450 4-221 (255)
320 COG4598 HisP ABC-type histidin 100.0 8.8E-40 1.9E-44 287.3 13.1 207 232-451 6-236 (256)
321 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.6E-39 7.7E-44 310.3 18.3 183 240-446 1-195 (246)
322 COG4148 ModC ABC-type molybdat 100.0 2E-39 4.3E-44 303.2 15.8 189 252-451 16-213 (352)
323 PRK13545 tagH teichoic acids e 100.0 1.3E-38 2.7E-43 328.8 23.3 195 232-450 21-226 (549)
324 PRK15064 ABC transporter ATP-b 100.0 5.6E-39 1.2E-43 342.1 21.2 201 233-450 2-236 (530)
325 COG4152 ABC-type uncharacteriz 100.0 1.8E-39 3.8E-44 298.4 14.0 212 232-456 2-219 (300)
326 PRK15439 autoinducer 2 ABC tra 100.0 3.6E-39 7.9E-44 341.8 18.4 204 232-449 268-485 (510)
327 PRK15064 ABC transporter ATP-b 100.0 1.3E-38 2.7E-43 339.4 22.4 193 232-450 319-519 (530)
328 PRK11819 putative ABC transpor 100.0 8.2E-39 1.8E-43 342.3 20.3 202 232-450 6-244 (556)
329 PRK10938 putative molybdenum t 100.0 4.6E-39 1E-43 339.8 18.1 205 232-448 260-484 (490)
330 TIGR00956 3a01205 Pleiotropic 100.0 1.9E-38 4E-43 367.5 24.2 208 232-450 759-987 (1394)
331 COG4604 CeuD ABC-type enteroch 100.0 2.4E-39 5.3E-44 288.6 12.4 207 233-452 2-221 (252)
332 PRK15177 Vi polysaccharide exp 100.0 1.6E-38 3.4E-43 299.7 18.6 186 249-458 2-194 (213)
333 PRK10982 galactose/methyl gala 100.0 1.4E-38 3E-43 336.2 20.2 205 232-447 250-471 (491)
334 TIGR00955 3a01204 The Eye Pigm 100.0 9.2E-39 2E-43 345.3 18.9 198 246-451 37-251 (617)
335 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-38 3.1E-43 340.3 19.7 202 232-450 4-242 (552)
336 TIGR01187 potA spermidine/putr 100.0 1.3E-38 2.8E-43 318.6 17.0 174 265-451 1-185 (325)
337 KOG0060 Long-chain acyl-CoA tr 100.0 3.2E-36 7E-41 305.3 32.7 418 14-443 186-642 (659)
338 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.4E-37 3.1E-42 279.3 19.4 154 235-444 2-157 (157)
339 COG1101 PhnK ABC-type uncharac 100.0 2.2E-37 4.9E-42 279.7 16.7 200 246-447 18-229 (263)
340 COG1119 ModF ABC-type molybden 100.0 8.1E-37 1.8E-41 282.7 20.6 207 231-450 30-256 (257)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 3.3E-37 7.1E-42 281.1 17.2 145 236-446 4-151 (177)
342 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7E-37 1.5E-41 327.3 22.7 191 232-447 322-521 (552)
343 PRK11147 ABC transporter ATPas 100.0 7.6E-37 1.7E-41 331.6 22.4 197 232-453 319-524 (635)
344 PRK11819 putative ABC transpor 100.0 8.6E-37 1.9E-41 326.7 22.5 192 231-447 323-523 (556)
345 PLN03073 ABC transporter F fam 100.0 1E-36 2.2E-41 331.7 22.9 195 231-450 507-708 (718)
346 COG4172 ABC-type uncharacteriz 100.0 5.7E-37 1.2E-41 299.1 18.1 211 232-450 6-241 (534)
347 PRK10636 putative ABC transpor 100.0 8.8E-37 1.9E-41 330.7 21.5 194 232-450 312-511 (638)
348 PRK13409 putative ATPase RIL; 100.0 7.1E-37 1.5E-41 327.3 20.3 190 232-449 340-535 (590)
349 PRK10636 putative ABC transpor 100.0 1.7E-36 3.8E-41 328.3 21.5 198 233-447 2-226 (638)
350 cd03238 ABC_UvrA The excision 100.0 4.4E-36 9.4E-41 273.5 18.6 160 247-449 8-176 (176)
351 PLN03140 ABC transporter G fam 100.0 5.4E-36 1.2E-40 346.2 23.7 209 232-450 867-1104(1470)
352 COG4167 SapF ABC-type antimicr 100.0 3.4E-36 7.3E-41 265.3 15.1 210 233-452 5-235 (267)
353 PRK13409 putative ATPase RIL; 100.0 1.9E-36 4.2E-41 324.0 13.3 192 237-443 78-287 (590)
354 COG4674 Uncharacterized ABC-ty 100.0 1.3E-35 2.8E-40 264.4 14.0 206 232-450 5-229 (249)
355 PRK11147 ABC transporter ATPas 100.0 4.7E-35 1E-39 317.6 21.3 198 232-448 3-234 (635)
356 COG0488 Uup ATPase components 100.0 1.1E-34 2.3E-39 303.6 19.7 203 232-452 3-235 (530)
357 COG4136 ABC-type uncharacteriz 100.0 8E-35 1.7E-39 249.0 15.0 194 232-440 2-207 (213)
358 TIGR00956 3a01205 Pleiotropic 100.0 5.1E-35 1.1E-39 338.9 18.2 197 247-451 74-295 (1394)
359 COG0396 sufC Cysteine desulfur 100.0 1.4E-33 3.1E-38 258.2 19.8 208 232-450 3-228 (251)
360 COG1134 TagH ABC-type polysacc 100.0 8.7E-34 1.9E-38 262.9 18.0 183 247-451 40-231 (249)
361 PF00005 ABC_tran: ABC transpo 100.0 2.4E-34 5.2E-39 252.0 12.0 136 250-398 1-137 (137)
362 PLN03140 ABC transporter G fam 100.0 2.2E-34 4.7E-39 332.9 15.3 202 247-451 178-422 (1470)
363 COG4107 PhnK ABC-type phosphon 100.0 8.7E-34 1.9E-38 248.2 15.0 212 232-453 6-238 (258)
364 PLN03073 ABC transporter F fam 100.0 1.3E-33 2.8E-38 307.5 19.6 210 232-447 177-421 (718)
365 COG4133 CcmA ABC-type transpor 100.0 1.9E-33 4.2E-38 249.7 13.1 187 233-433 3-195 (209)
366 KOG0061 Transporter, ABC super 100.0 4.5E-33 9.7E-38 298.7 16.8 211 231-451 24-255 (613)
367 COG4586 ABC-type uncharacteriz 100.0 5E-33 1.1E-37 259.7 13.6 195 248-450 38-240 (325)
368 COG0488 Uup ATPase components 100.0 1.6E-31 3.4E-36 279.8 23.2 194 231-449 320-517 (530)
369 cd03270 ABC_UvrA_I The excisio 100.0 6.5E-33 1.4E-37 263.7 10.8 191 246-449 7-226 (226)
370 KOG0064 Peroxisomal long-chain 100.0 3.1E-29 6.8E-34 251.5 32.5 411 14-440 221-681 (728)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 1.7E-31 3.7E-36 248.5 13.2 164 251-442 14-190 (197)
372 cd03271 ABC_UvrA_II The excisi 100.0 2E-30 4.3E-35 250.1 15.1 191 249-450 10-260 (261)
373 KOG0059 Lipid exporter ABCA1 a 100.0 1.9E-30 4.1E-35 289.7 16.0 208 231-450 563-781 (885)
374 COG4778 PhnL ABC-type phosphon 100.0 1.9E-30 4.1E-35 226.5 10.0 200 233-442 5-227 (235)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 9.7E-30 2.1E-34 244.6 14.5 192 232-441 3-234 (243)
376 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.4E-29 3.1E-34 238.8 13.6 191 232-445 5-211 (213)
377 COG1129 MglA ABC-type sugar tr 100.0 9.6E-28 2.1E-32 245.7 19.9 220 232-458 263-494 (500)
378 cd03273 ABC_SMC2_euk Eukaryoti 100.0 3.4E-28 7.4E-33 235.1 13.4 181 260-441 25-242 (251)
379 COG4138 BtuD ABC-type cobalami 100.0 6.5E-29 1.4E-33 217.8 6.1 202 233-452 4-217 (248)
380 KOG0927 Predicted transporter 100.0 1.5E-28 3.3E-33 248.1 9.2 196 231-450 388-590 (614)
381 cd03240 ABC_Rad50 The catalyti 100.0 7.6E-28 1.7E-32 225.3 12.9 163 253-442 16-197 (204)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.5E-28 9.7E-33 228.0 9.9 184 232-442 5-204 (212)
383 KOG0065 Pleiotropic drug resis 99.9 1.9E-26 4.1E-31 253.6 12.0 196 245-450 802-1015(1391)
384 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.6E-26 1E-30 219.7 10.0 202 232-442 3-233 (247)
385 COG3845 ABC-type uncharacteriz 99.9 1.4E-24 3E-29 218.5 20.1 213 231-450 256-486 (501)
386 PRK00349 uvrA excinuclease ABC 99.9 2.9E-25 6.3E-30 246.0 16.2 94 358-451 818-922 (943)
387 PRK00635 excinuclease ABC subu 99.9 6.8E-25 1.5E-29 252.5 18.6 205 232-451 600-901 (1809)
388 KOG0062 ATPase component of AB 99.9 7.3E-25 1.6E-29 220.4 14.8 200 230-452 360-564 (582)
389 COG4170 SapD ABC-type antimicr 99.9 7.6E-25 1.6E-29 197.5 12.6 207 233-450 4-242 (330)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.8E-24 6.1E-29 200.2 11.6 172 250-444 12-192 (198)
391 KOG0927 Predicted transporter 99.9 6.8E-24 1.5E-28 214.5 14.5 209 230-450 73-303 (614)
392 TIGR00630 uvra excinuclease AB 99.9 2.4E-23 5.1E-28 230.4 19.3 93 358-450 816-919 (924)
393 KOG0062 ATPase component of AB 99.9 1.5E-24 3.3E-29 218.1 8.1 189 231-446 79-274 (582)
394 KOG0066 eIF2-interacting prote 99.9 9.3E-24 2E-28 208.0 12.5 193 231-447 585-781 (807)
395 COG1245 Predicted ATPase, RNas 99.9 1.1E-23 2.4E-28 209.0 13.0 169 249-442 351-531 (591)
396 cd03239 ABC_SMC_head The struc 99.9 3.6E-22 7.8E-27 182.8 12.9 85 352-442 83-172 (178)
397 KOG2355 Predicted ABC-type tra 99.9 2.7E-21 5.8E-26 174.2 15.1 204 230-447 11-228 (291)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.4E-21 3.1E-26 182.4 10.5 145 250-449 17-172 (200)
399 cd03241 ABC_RecN RecN ATPase i 99.9 4.2E-21 9.2E-26 188.1 13.0 77 369-445 170-250 (276)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.8 5.4E-21 1.2E-25 180.0 12.0 180 251-444 15-211 (213)
401 COG2401 ABC-type ATPase fused 99.8 3.2E-20 7E-25 182.5 12.9 179 248-448 397-590 (593)
402 COG1245 Predicted ATPase, RNas 99.8 1.3E-20 2.8E-25 187.3 10.2 189 237-442 79-288 (591)
403 KOG0065 Pleiotropic drug resis 99.8 4.2E-20 9.1E-25 204.0 12.6 202 247-453 128-348 (1391)
404 cd03227 ABC_Class2 ABC-type Cl 99.8 1.7E-19 3.7E-24 162.8 13.5 135 254-442 15-155 (162)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1.3E-19 2.9E-24 171.6 9.3 151 247-449 17-174 (222)
406 cd03242 ABC_RecF RecF is a rec 99.8 2.4E-18 5.1E-23 168.1 13.7 75 368-445 182-269 (270)
407 cd01128 rho_factor Transcripti 99.8 8.4E-19 1.8E-23 168.2 8.9 184 255-450 11-216 (249)
408 PRK00635 excinuclease ABC subu 99.8 6.2E-18 1.3E-22 195.5 15.9 203 249-452 1505-1792(1809)
409 COG0178 UvrA Excinuclease ATPa 99.8 9.9E-18 2.1E-22 177.0 15.7 93 362-454 815-917 (935)
410 cd03243 ABC_MutS_homologs The 99.7 4.8E-18 1E-22 158.9 10.8 150 252-450 21-173 (202)
411 cd03283 ABC_MutS-like MutS-lik 99.7 2.8E-18 6.2E-23 159.8 7.5 136 248-433 15-153 (199)
412 KOG0066 eIF2-interacting prote 99.7 2.8E-18 6.1E-23 169.5 4.8 202 232-447 264-489 (807)
413 PF00664 ABC_membrane: ABC tra 99.7 5.6E-15 1.2E-19 141.3 24.3 182 2-183 90-274 (275)
414 TIGR00630 uvra excinuclease AB 99.7 6.2E-17 1.3E-21 179.7 10.9 88 363-450 481-577 (924)
415 cd00820 PEPCK_HprK Phosphoenol 99.7 2.9E-17 6.3E-22 136.0 5.8 75 248-330 3-77 (107)
416 TIGR02858 spore_III_AA stage I 99.7 4E-16 8.7E-21 151.3 13.2 133 261-444 112-259 (270)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.7 5.1E-16 1.1E-20 145.1 10.9 138 247-433 16-156 (204)
418 KOG0063 RNAse L inhibitor, ABC 99.7 5E-16 1.1E-20 153.6 11.0 178 240-442 343-532 (592)
419 PRK00349 uvrA excinuclease ABC 99.7 3.2E-16 6.8E-21 174.4 10.6 93 358-450 477-579 (943)
420 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.6E-15 3.4E-20 143.2 9.2 148 247-447 18-172 (216)
421 TIGR00606 rad50 rad50. This fa 99.6 3.5E-15 7.5E-20 174.1 13.6 119 319-441 1153-1289(1311)
422 PF02463 SMC_N: RecF/RecN/SMC 99.6 7.8E-15 1.7E-19 138.9 11.0 72 369-440 136-211 (220)
423 PRK00064 recF recombination pr 99.5 1.1E-13 2.4E-18 140.5 15.7 76 368-445 272-359 (361)
424 PHA02562 46 endonuclease subun 99.5 1.7E-14 3.6E-19 155.4 7.5 92 353-445 446-555 (562)
425 cd03281 ABC_MSH5_euk MutS5 hom 99.5 1.4E-13 3E-18 129.7 11.9 134 249-434 18-160 (213)
426 PRK07721 fliI flagellum-specif 99.5 5.8E-13 1.3E-17 137.3 16.6 173 248-450 147-337 (438)
427 smart00534 MUTSac ATPase domai 99.5 8.7E-14 1.9E-18 128.3 6.5 67 367-436 59-130 (185)
428 PTZ00132 GTP-binding nuclear p 99.4 1.4E-13 3.1E-18 129.8 6.8 44 373-416 156-204 (215)
429 TIGR01069 mutS2 MutS2 family p 99.4 6.3E-13 1.4E-17 146.3 11.2 151 232-432 295-449 (771)
430 TIGR00634 recN DNA repair prot 99.4 4.5E-13 9.7E-18 143.9 9.2 77 368-444 439-519 (563)
431 PRK10869 recombination and rep 99.4 1.5E-12 3.3E-17 138.9 10.1 76 369-444 430-509 (553)
432 KOG0063 RNAse L inhibitor, ABC 99.3 1E-12 2.2E-17 130.5 5.7 174 258-442 98-288 (592)
433 cd03287 ABC_MSH3_euk MutS3 hom 99.3 6.8E-12 1.5E-16 118.6 10.1 137 247-433 18-159 (222)
434 PRK08533 flagellar accessory p 99.3 5.2E-11 1.1E-15 113.5 14.3 158 233-441 8-184 (230)
435 PRK00409 recombination and DNA 99.3 2.2E-11 4.8E-16 134.5 13.0 79 367-447 388-469 (782)
436 PRK13695 putative NTPase; Prov 99.3 2.3E-12 4.9E-17 117.6 4.4 79 367-448 76-156 (174)
437 cd01124 KaiC KaiC is a circadi 99.2 1E-10 2.2E-15 107.5 11.5 79 363-441 65-163 (187)
438 TIGR00618 sbcc exonuclease Sbc 99.2 3.7E-11 8E-16 138.0 10.1 79 366-444 947-1037(1042)
439 PRK01156 chromosome segregatio 99.2 4.5E-11 9.7E-16 135.6 9.8 76 366-441 798-883 (895)
440 TIGR03238 dnd_assoc_3 dnd syst 99.2 2E-11 4.4E-16 124.9 5.3 67 248-317 20-87 (504)
441 PRK03918 chromosome segregatio 99.2 6.2E-11 1.3E-15 134.3 9.3 76 367-442 786-868 (880)
442 TIGR02788 VirB11 P-type DNA tr 99.1 5.1E-11 1.1E-15 118.6 6.8 138 253-450 137-275 (308)
443 PRK06793 fliI flagellum-specif 99.1 2.7E-10 5.8E-15 116.9 11.5 167 231-448 129-303 (432)
444 TIGR02168 SMC_prok_B chromosom 99.1 8.9E-11 1.9E-15 136.7 8.0 75 366-440 1086-1164(1179)
445 TIGR02169 SMC_prok_A chromosom 99.1 1.8E-10 3.8E-15 134.2 8.6 75 368-442 1073-1151(1164)
446 cd01120 RecA-like_NTPases RecA 99.1 7.7E-10 1.7E-14 98.5 10.8 129 262-431 1-140 (165)
447 cd03286 ABC_MSH6_euk MutS6 hom 99.1 8.2E-10 1.8E-14 104.2 11.4 137 247-433 17-158 (218)
448 PF13304 AAA_21: AAA domain; P 99.1 2.8E-10 6E-15 108.2 8.0 64 368-431 235-302 (303)
449 PRK13830 conjugal transfer pro 99.0 1.3E-09 2.7E-14 121.8 12.8 66 384-449 649-726 (818)
450 cd01131 PilT Pilus retraction 99.0 5.6E-10 1.2E-14 104.0 7.3 119 262-441 3-122 (198)
451 COG0178 UvrA Excinuclease ATPa 99.0 1.1E-09 2.4E-14 116.8 9.9 88 364-451 476-572 (935)
452 PRK10246 exonuclease subunit S 99.0 9E-10 2E-14 126.1 9.0 78 365-442 945-1032(1047)
453 smart00382 AAA ATPases associa 99.0 1.8E-08 3.8E-13 86.5 14.7 117 259-427 1-125 (148)
454 PRK06067 flagellar accessory p 98.9 1.5E-08 3.2E-13 97.0 13.8 74 369-442 100-187 (234)
455 PRK02224 chromosome segregatio 98.9 2.5E-09 5.5E-14 121.3 8.6 77 368-444 780-870 (880)
456 PRK00300 gmk guanylate kinase; 98.9 5.6E-09 1.2E-13 97.6 8.7 66 258-328 3-80 (205)
457 COG3910 Predicted ATPase [Gene 98.9 1.2E-08 2.6E-13 91.6 9.5 79 368-447 128-208 (233)
458 PRK06002 fliI flagellum-specif 98.8 5E-09 1.1E-13 107.8 7.5 87 229-317 136-229 (450)
459 TIGR00767 rho transcription te 98.8 1.3E-08 2.9E-13 102.8 9.9 81 198-287 104-195 (415)
460 TIGR02655 circ_KaiC circadian 98.8 1.7E-09 3.7E-14 114.2 1.2 156 256-441 17-190 (484)
461 PF09818 ABC_ATPase: Predicted 98.7 9.4E-08 2E-12 96.8 11.8 171 238-445 227-416 (448)
462 PRK06995 flhF flagellar biosyn 98.6 2.3E-08 4.9E-13 104.2 4.9 61 250-329 246-306 (484)
463 TIGR00611 recf recF protein. A 98.6 4.4E-08 9.6E-13 99.7 6.8 62 369-432 275-345 (365)
464 PRK07196 fliI flagellum-specif 98.6 2.2E-08 4.8E-13 102.9 4.6 80 248-328 144-233 (434)
465 PRK13891 conjugal transfer pro 98.6 6.8E-07 1.5E-11 100.6 16.4 53 380-432 680-734 (852)
466 cd01130 VirB11-like_ATPase Typ 98.6 3E-08 6.6E-13 91.4 3.9 66 249-317 14-79 (186)
467 PRK01889 GTPase RsgA; Reviewed 98.5 4.8E-08 1E-12 99.1 4.1 79 249-330 184-262 (356)
468 TIGR01420 pilT_fam pilus retra 98.5 2.8E-07 6.1E-12 93.2 9.4 123 257-440 119-242 (343)
469 cd01125 repA Hexameric Replica 98.5 1.6E-07 3.5E-12 90.1 7.2 44 384-428 108-159 (239)
470 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1.3E-07 2.8E-12 95.7 6.2 87 258-345 132-233 (358)
471 PRK14079 recF recombination pr 98.5 3.4E-07 7.3E-12 92.8 8.2 75 369-448 263-346 (349)
472 PRK10078 ribose 1,5-bisphospho 98.5 1.8E-07 3.8E-12 86.3 5.6 55 260-317 2-56 (186)
473 PRK08149 ATP synthase SpaL; Va 98.5 1.7E-07 3.7E-12 96.3 5.7 68 247-315 139-213 (428)
474 PRK10733 hflB ATP-dependent me 98.5 3.5E-08 7.6E-13 107.6 0.3 28 256-285 183-210 (644)
475 TIGR01026 fliI_yscN ATPase Fli 98.5 1.2E-06 2.5E-11 91.0 11.5 177 247-450 151-342 (440)
476 COG0419 SbcC ATPase involved i 98.4 6.6E-07 1.4E-11 101.7 9.3 79 366-444 812-899 (908)
477 cd02023 UMPK Uridine monophosp 98.4 1.4E-07 3E-12 87.7 2.9 23 262-284 1-23 (198)
478 TIGR03881 KaiC_arch_4 KaiC dom 98.4 6.4E-07 1.4E-11 85.2 6.7 57 256-316 16-76 (229)
479 TIGR02680 conserved hypothetic 98.4 6.1E-07 1.3E-11 105.3 7.7 62 366-429 1244-1317(1353)
480 PRK05399 DNA mismatch repair p 98.4 2.4E-06 5.2E-11 96.0 11.8 65 371-436 668-738 (854)
481 PLN03210 Resistant to P. syrin 98.3 1.7E-06 3.6E-11 100.9 10.6 46 251-296 198-244 (1153)
482 TIGR02322 phosphon_PhnN phosph 98.3 8.6E-07 1.9E-11 81.0 6.2 62 260-322 1-78 (179)
483 PRK13898 type IV secretion sys 98.3 1.5E-05 3.2E-10 89.5 16.9 49 383-431 638-688 (800)
484 PRK09825 idnK D-gluconate kina 98.3 5.7E-07 1.2E-11 82.2 4.5 53 259-317 2-55 (176)
485 TIGR00235 udk uridine kinase. 98.3 3.3E-07 7.1E-12 86.0 2.7 29 258-286 4-32 (207)
486 PLN02796 D-glycerate 3-kinase 98.3 3.4E-07 7.4E-12 91.2 2.3 62 247-308 79-151 (347)
487 cd00009 AAA The AAA+ (ATPases 98.3 4.6E-06 1E-10 72.0 8.9 54 375-429 72-131 (151)
488 cd01123 Rad51_DMC1_radA Rad51_ 98.2 3.2E-06 7E-11 80.6 8.3 77 257-339 16-99 (235)
489 TIGR00101 ureG urease accessor 98.2 2.6E-06 5.7E-11 79.4 7.4 57 262-319 3-59 (199)
490 TIGR02903 spore_lon_C ATP-depe 98.2 4.5E-06 9.7E-11 90.6 9.9 110 259-414 174-291 (615)
491 PRK07594 type III secretion sy 98.2 1.5E-06 3.3E-11 89.5 5.6 66 231-298 128-193 (433)
492 COG3044 Predicted ATPase of th 98.2 1.1E-05 2.5E-10 80.5 11.4 159 255-446 238-412 (554)
493 TIGR00152 dephospho-CoA kinase 98.2 3.1E-06 6.8E-11 78.1 6.8 78 373-458 61-142 (188)
494 TIGR03263 guanyl_kin guanylate 98.2 1.7E-06 3.6E-11 79.1 4.5 27 260-286 1-27 (180)
495 PRK15494 era GTPase Era; Provi 98.2 1.2E-06 2.6E-11 88.5 3.8 55 229-284 15-76 (339)
496 PRK06315 type III secretion sy 98.2 1.4E-06 3E-11 90.0 4.0 70 248-318 153-234 (442)
497 PRK03846 adenylylsulfate kinas 98.1 1.8E-06 3.9E-11 80.4 4.0 56 258-317 22-78 (198)
498 PRK09862 putative ATP-dependen 98.1 2.2E-06 4.9E-11 90.1 5.0 63 235-299 187-249 (506)
499 PRK14722 flhF flagellar biosyn 98.1 6.1E-06 1.3E-10 83.7 7.9 37 248-284 125-161 (374)
500 cd01136 ATPase_flagellum-secre 98.1 2.9E-06 6.3E-11 84.5 5.2 50 247-297 57-106 (326)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-92 Score=733.81 Aligned_cols=448 Identities=27% Similarity=0.417 Sum_probs=398.9
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
++|||++++||+++|+++|+..+...++..+...+.++++.++.+++|+++||.++++++..+|+.+.+.++|.+..++.
T Consensus 236 iaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rkl 315 (716)
T KOG0058|consen 236 IAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKL 315 (716)
T ss_pred hhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998888888888889999999999
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 158 (461)
.+..+++.++.++...|.+.+++|||+|+.|+...++|.+..+...+...+.......+.....+...+..+.++++.
T Consensus 316 S~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~ 395 (716)
T KOG0058|consen 316 SKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGH 395 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999988887776654333222222222233333333333331
Q ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 159 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
....|+++.|.+..|+.|...+...+..++..+..+.++..|.+|++|+++.+|.-+. + ....+. ...|.|+|+||
T Consensus 396 Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~--~-G~~~p~-~~~G~IeF~~V 471 (716)
T KOG0058|consen 396 LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL--T-GTLAPD-HLQGVIEFEDV 471 (716)
T ss_pred hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC--C-Cccccc-cccceEEEEEe
Confidence 1234889999999999999999999999999999999999999999999998665322 1 111111 35789999999
Q ss_pred EEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 239 ~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
+|+||.. +.++|+|+||+|+|||++|+|||||+||||++++|.++|+|++|+|.+||+||++++...||++||+|.|||
T Consensus 472 sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 472 SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 9999754 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 318 ~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
.||++||+|||.++. +.++|++..|++.++.++||.++|+||||.+||+|.+|||||||||||||||++||+||||||+
T Consensus 552 vLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA 631 (716)
T KOG0058|consen 552 VLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA 631 (716)
T ss_pred eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech
Confidence 999999999999874 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|||||.++|..++++|.+..+++|||+|+||+++++.||+|+|+++|+++|.|.|.
T Consensus 632 TSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 632 TSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred hhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999988999999999999999999999999999999999864
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.9e-87 Score=719.46 Aligned_cols=448 Identities=29% Similarity=0.422 Sum_probs=403.4
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
+.||+++++||+++|+. |.+.++.++...+...+..+++.++++++|++++|+++++++..++++..+...+.+..++.
T Consensus 242 l~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~ 320 (709)
T COG2274 242 LSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRK 320 (709)
T ss_pred HHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999995 88999999988888888888888999999999999999988777777766666666666666
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV- 159 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 159 (461)
.++..+..++.++++.|+++|++++|+.+.|+++..+|++...+..+...+......+......+++.+..++++++..
T Consensus 321 ~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~ 400 (709)
T COG2274 321 TRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400 (709)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667778889999999999999999999999999999999999888877777777777777777776666666543
Q ss_pred -HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 160 -LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 160 -~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
...+.++.|.+.++.++...+..|+..+.+.+..++....+.+|+.++++.|+|.+.. ..+...++..|+|+++||
T Consensus 401 lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~~~~~~~~~~g~I~~~nv 477 (709)
T COG2274 401 LVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---KTLIHLPKLQGEIEFENV 477 (709)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cccccccccCceEEEEEE
Confidence 2458999999999999999999999999999999999999999999999988774321 111223345789999999
Q ss_pred EEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 239 ~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
+|+|+++++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||.|++++++..+|++||||+||+.
T Consensus 478 sf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 478 SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred EEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 99998887789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 319 lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
+|+|||+||++++. +.++|++++||+.++++++|.++|.||+|++||+|.+|||||||||+||||++++|+||||||||
T Consensus 558 Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 99999999999875 57789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|+||+++|+.+.+.|.+..+++|+|+||||++++++||||+|||+|+|+++|+|-
T Consensus 638 SaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ 692 (709)
T COG2274 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHE 692 (709)
T ss_pred cccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHH
Confidence 9999999999999999998899999999999999999999999999999999964
No 3
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.3e-87 Score=743.04 Aligned_cols=450 Identities=53% Similarity=0.869 Sum_probs=430.5
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
|.|||++|+|.++||+++|++.+|..+|..+..+++.++.+++.++++.+..|+++++++|+.+++++++++|.+..++.
T Consensus 906 m~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReL 985 (1381)
T KOG0054|consen 906 MSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSREL 985 (1381)
T ss_pred chhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (461)
.+....+++++.+++.|+++|+.|||+|+.+++|.+++.+..|.+.+..+.......|+..+++.+.+++..+++++.+.
T Consensus 986 kRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl 1065 (1381)
T KOG0054|consen 986 KRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL 1065 (1381)
T ss_pred HHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877777665
Q ss_pred hCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 161 LPGK-HLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 161 ~~g~-~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
.... .++|.++..++|+..+...+.++.+....+++.+.|+||+.|+.+.|+|.+...+...|+..||..|.|+|+|++
T Consensus 1066 ~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~ 1145 (1381)
T KOG0054|consen 1066 LPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLS 1145 (1381)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeE
Confidence 5543 678999999999999999999999999999999999999999999888755544444477789999999999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
.+|.++.++||+|+||+|+|||+|||||++|||||||+++|.|+.+|.+|+|.|||.|++++..+++|++++++||||.|
T Consensus 1146 ~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1146 LRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred EEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 012523 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (461)
Q Consensus 320 f~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~ 399 (461)
|+||+|.||.|+.+++|+++|+|+++|++.+.+.++|.|+|+.+.|+|.|+|-||||.+||||||+|+++||+|||+|++
T Consensus 1226 FsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATAS 1305 (1381)
T ss_pred ecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 400 IDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
+|++|+..|++.|++.+++||||.|+||++++.+||||+|||+|+|+|.|.
T Consensus 1306 VD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1306 VDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred CChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCC
Confidence 999999999999999999999999999999999999999999999999876
No 4
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-82 Score=694.49 Aligned_cols=451 Identities=24% Similarity=0.323 Sum_probs=366.4
Q ss_pred CCcccc-CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDS-TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARE 79 (461)
Q Consensus 1 ~~~f~~-~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 79 (461)
++|||. .++|.+.+|+.+|...++..+...+..+++++..+++.+++.++++|.++++++.+.|++........+....
T Consensus 755 ~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~ 834 (1228)
T KOG0055|consen 755 VGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKG 834 (1228)
T ss_pred CcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 479996 2449999999999999999999999999999999999999999999999987765555544433333333333
Q ss_pred HHHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 80 LMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV 159 (461)
Q Consensus 80 ~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (461)
......+...+......|++++++||++|+.|+++.+.|.+..+...+...+..........+..++..++..+..++..
T Consensus 835 ~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~ 914 (1228)
T KOG0055|consen 835 FSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGA 914 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333344556677899999999999999999999999998888877765554433333333333333333333333322
Q ss_pred -H-hCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEe
Q 012523 160 -L-LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELED 237 (461)
Q Consensus 160 -~-~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (461)
+ ..+.+++..+...+.....-.........+...+..+..|+.+++++++.++..+... +.....++.+|.|+++|
T Consensus 915 ~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~--~~~~~~~~~~G~I~~~~ 992 (1228)
T KOG0055|consen 915 RLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS--TSGGKLPNVKGDIEFRN 992 (1228)
T ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC--CCCCccccceeEEEEee
Confidence 1 2366666544433222222222334445566778899999999999999766322111 11111223678999999
Q ss_pred EEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccC
Q 012523 238 LKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (461)
Q Consensus 238 v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 316 (461)
|+|+||.. +.++|+|+||+|++|+++||||||||||||++.+|.|+|+|++|.|.|||.|+++++++++|++||.|.||
T Consensus 993 V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 993 VSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred eEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccC
Confidence 99999743 34699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 012523 317 PTLFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (461)
Q Consensus 317 ~~lf~~ti~~Nl~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDE 395 (461)
|.||++||||||.++ .+++.+|+.+|++.++.++||..||+||||.+||+|.+||||||||||||||++|||+||||||
T Consensus 1073 P~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDE 1152 (1228)
T KOG0055|consen 1073 PVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDE 1152 (1228)
T ss_pred chhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeec
Confidence 999999999999987 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 396 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
+||+||.++|+.++++|++...++|+|+|+||++++++||.|+|+++|+|+|+|.|-|
T Consensus 1153 ATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1153 ATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred cchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHH
Confidence 9999999999999999999999999999999999999999999999999999999866
No 5
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.9e-82 Score=738.54 Aligned_cols=452 Identities=40% Similarity=0.677 Sum_probs=403.4
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
+.||+++++|++++|+++|++.++..++..+..++..++.+++.++++++.+|+++++++|++++++++.+++.+..++.
T Consensus 1053 ~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1132 (1522)
T TIGR00957 1053 MSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQL 1132 (1522)
T ss_pred hhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999888888888888888888887777777777777788888888888
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (461)
.+...+.++++.+++.|+++|+++||+|+.++++.+++.+..+...+..+.......|+...++.+..++.++++.+.+.
T Consensus 1133 ~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1212 (1522)
T TIGR00957 1133 KRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVI 1212 (1522)
T ss_pred HHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88778888999999999999999999999999999999999888888776666667787777666655443333333333
Q ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEE
Q 012523 161 LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV 240 (461)
Q Consensus 161 ~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 240 (461)
..+.+++|.+++++.|+..+..++..+.+.+..++..+.|++|+.++++.++|.+...+...++..||..|.|+|+||+|
T Consensus 1213 ~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf 1292 (1522)
T TIGR00957 1213 SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCL 1292 (1522)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEE
Confidence 34778899999999999999999999999999999999999999999987765432111222333466778999999999
Q ss_pred EeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc
Q 012523 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (461)
Q Consensus 241 ~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 320 (461)
+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||++|
T Consensus 1293 ~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF 1372 (1522)
T TIGR00957 1293 RYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF 1372 (1522)
T ss_pred EeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc
Confidence 99766557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC
Q 012523 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400 (461)
Q Consensus 321 ~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~L 400 (461)
+||||+||.++++++|+++++|++.+++++++.++|+||||.+||+|.+||||||||+|||||++++|+|||||||||+|
T Consensus 1373 ~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSal 1452 (1522)
T TIGR00957 1373 SGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452 (1522)
T ss_pred CccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 99999999977789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 401 DSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 401 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|++|++.+++.|++..+++|+|+||||++++.+||||+|||+|+|+|.|.|-
T Consensus 1453 D~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1453 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999988999999999999999999999999999999999864
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.4e-81 Score=677.74 Aligned_cols=446 Identities=21% Similarity=0.270 Sum_probs=366.8
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++..++...+.+..++..
T Consensus 112 ~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 191 (588)
T PRK11174 112 AWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADAN 191 (588)
T ss_pred hhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999888888888888888888889999999988776666666666666666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL-IVL 160 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 160 (461)
+...+..+++.+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..............+..+..++++++ ...
T Consensus 192 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (588)
T PRK11174 192 RRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFS 271 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777889999999999999999999999999999887777665544433332222222222222222111111 111
Q ss_pred hCCCccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcc
Q 012523 161 LPGKHLPGFV---------GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHG 231 (461)
Q Consensus 161 ~~g~~~~g~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (461)
..|.++.|.+ .+++.+...+..|+..+...+..+..+..+.+|+.++++.+++.+. +..... +.+..+
T Consensus 272 ~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~~~~~-~~~~~~ 348 (588)
T PRK11174 272 YLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QGEKEL-ASNDPV 348 (588)
T ss_pred HhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCcccc-CCCCCc
Confidence 2244444432 2222444556778888888888999999999999999987543221 111000 111234
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+| |++|+|.+||+|+++++.+++|++|+
T Consensus 349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence 69999999877644 46999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred EEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
||||+|++|++||+|||.++. ++++++++++++.+++++++.++|+||||.+||+|.+|||||||||+||||++++|++
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999874 6899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
||||||||+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|+|+|+|.|-
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~ 568 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYA 568 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHH
Confidence 99999999999999999999999988899999999999999999999999999999999864
No 7
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.1e-81 Score=731.02 Aligned_cols=452 Identities=40% Similarity=0.690 Sum_probs=387.5
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
+.||+++++|++++|+++|++.++..++..+..++..++.+++.++++++++|...++++|++++++.+..++.+..++.
T Consensus 1001 ~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~ 1080 (1622)
T PLN03130 1001 MSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREV 1080 (1622)
T ss_pred HHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999888888888888888888888888666666776666666667777777777
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (461)
.+.....++++.+++.|+++|+++||+|+.++++.+.+.+..+...+..+.......|+......+..++..+++.+.+.
T Consensus 1081 ~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~ 1160 (1622)
T PLN03130 1081 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVM 1160 (1622)
T ss_pred HHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999888888887777665555556676655555554443333222222
Q ss_pred hCCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEE
Q 012523 161 LPGKH-----LPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIEL 235 (461)
Q Consensus 161 ~~g~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (461)
..+.. ..+.++.+++|...+..++..+.+.+..++....+++|+.++++.++|.+...+...++..||..|.|+|
T Consensus 1161 ~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1240 (1622)
T PLN03130 1161 QNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKF 1240 (1622)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEE
Confidence 22211 1345556667777777778888888888899999999999999987765322122223334566788999
Q ss_pred EeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEcc
Q 012523 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (461)
Q Consensus 236 ~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 315 (461)
+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||
T Consensus 1241 ~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1241 EDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred EEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECC
Confidence 99999997665679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 012523 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (461)
Q Consensus 316 ~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDE 395 (461)
||.+|+|||||||.++.+++|+++++|++++++++++.++|+||||.+||+|.+|||||||||||||||+++|+||||||
T Consensus 1321 dp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130 1321 APVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred CCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999887889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 396 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|||+||++||+.|++.|++..+++|+|+||||++++.+||||+||++|+|+|.|.|-
T Consensus 1401 ATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1401 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999998899999999999999999999999999999999864
No 8
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-80 Score=667.49 Aligned_cols=445 Identities=27% Similarity=0.424 Sum_probs=376.4
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||++.++|++++|+++|++.++..+......+..+++.+++.+++++..+|.++++++...++..+....+.++.++..
T Consensus 101 ~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 180 (567)
T COG1132 101 SFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLS 180 (567)
T ss_pred HHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999998887555555678888888899999999988877666666655555555556666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+..++..+++.+.+.|.++|++++|+|+.++...+++.+..+...+...+..............+..+...++.++ ..
T Consensus 181 ~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (567)
T COG1132 181 RRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFL 260 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777899999999999999999999999888888777666555543333333333222333333322222222 11
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...+.++.|.+.+++.+...+..++..+...+..++.+..+.+|+.++++.+++... ...+ .....++|+|+||+
T Consensus 261 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vs 335 (567)
T COG1132 261 VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVS 335 (567)
T ss_pred HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEE
Confidence 234678899999999999999999999999999999999999999999997543211 1111 12245679999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++ +++|+|+||+++|||++||||||||||||++++|+|+|+|++|+|++||+|+++++..++|++|++|||||++
T Consensus 336 f~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 336 FSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred EEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 999753 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 320 f~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
|++||+|||.++. +++++++++|++.+++++++.++|+||||.+||+|.+||||||||++||||++++||+||||||||
T Consensus 415 F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 9999999999885 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
+||+++|+.+++.+++..+++|+++||||++++++||+|+|||+|+|+|.|.|-
T Consensus 495 alD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 495 ALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred ccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999877889999999999999999999999999999999973
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.3e-80 Score=677.74 Aligned_cols=444 Identities=24% Similarity=0.326 Sum_probs=377.8
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|++ |++.++..+...+...+..++.++++++++++++|+++++++.+.++..++...+.+..++..
T Consensus 225 ~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 303 (686)
T TIGR03797 225 SFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKE 303 (686)
T ss_pred HHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999997 788898888777767666777777778888999999988777666655555555555555555
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV-- 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 159 (461)
+...+..++..+.+.|.++|+++||+++.|+++.++|.+..++..+...+......+.......+..+..+++.++..
T Consensus 304 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 383 (686)
T TIGR03797 304 RRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISL 383 (686)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666778899999999999999999999999999998888877766655554444444444443333333322221
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.++.|.+.++..+...+..++..+...+..++.+..+.+|+.++++.+++.+. .... ..+..+.|+++||+
T Consensus 384 v~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~~~nvs 458 (686)
T TIGR03797 384 LGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIEVDRVT 458 (686)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEEEEEEE
Confidence 235889999998888888888899999999999999999999999999987654321 1111 11234579999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|.+||+|+++++++++|++||||||||++
T Consensus 459 f~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 538 (686)
T TIGR03797 459 FRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538 (686)
T ss_pred EEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc
Confidence 99976556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 012523 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (461)
Q Consensus 320 f~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~ 399 (461)
|++|++|||.++.++++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++++|++||||||||+
T Consensus 539 f~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~ 618 (686)
T TIGR03797 539 MSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618 (686)
T ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 99999999998766889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 400 IDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
||+++|+.+++.+++. ++|+|+||||+++++.||+|++|++|+|+++|.|-.
T Consensus 619 LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 619 LDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred CCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999886 589999999999999999999999999999998643
No 10
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.5e-80 Score=721.34 Aligned_cols=452 Identities=41% Similarity=0.692 Sum_probs=380.8
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
+.||+++++|++++|+++|++.++..++..+..++..++.+++.+++++++++...++++|+.+++..+..++.+..++.
T Consensus 998 ~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1077 (1495)
T PLN03232 998 MLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREV 1077 (1495)
T ss_pred eeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999888888887777777777777776665566666655555566666666777
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (461)
.+.....++++.+++.|+++|+++||+|+.++++.+++.+..+...+..........|+......+..++..+.+.+.+.
T Consensus 1078 ~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~ 1157 (1495)
T PLN03232 1078 RRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL 1157 (1495)
T ss_pred HHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999888888777776655444445565554444443332222222222
Q ss_pred hCCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEE
Q 012523 161 LPGKH-----LPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIEL 235 (461)
Q Consensus 161 ~~g~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (461)
..+.. ..+.++.++.|...+..++..+.+.+..++....+++|+.++++.++|.+...+...++..||..+.|+|
T Consensus 1158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f 1237 (1495)
T PLN03232 1158 RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKF 1237 (1495)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEE
Confidence 22221 1334455666777777788888888889999999999999999887664321111122334566778999
Q ss_pred EeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEcc
Q 012523 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (461)
Q Consensus 236 ~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 315 (461)
+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||
T Consensus 1238 ~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQ 1317 (1495)
T PLN03232 1238 EDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ 1317 (1495)
T ss_pred EEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECC
Confidence 99999997665679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 012523 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (461)
Q Consensus 316 ~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDE 395 (461)
||++|+|||||||.++.+++|++++++++++++++++.++|+||||.+||+|.+||||||||+||||||+++|+||||||
T Consensus 1318 dp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDE 1397 (1495)
T PLN03232 1318 SPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE 1397 (1495)
T ss_pred CCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999999999999887889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 396 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|||+||++|++.+++.|++..+++|+|+||||++++.+||||+||++|+|+|.|.|-
T Consensus 1398 ATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~ 1454 (1495)
T PLN03232 1398 ATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQ 1454 (1495)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999988899999999999999999999999999999999864
No 11
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.8e-79 Score=674.58 Aligned_cols=449 Identities=22% Similarity=0.292 Sum_probs=381.2
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++| +.++.++...+...+..++.++++++++++++|+++++++...++.+++..++.+..++..
T Consensus 243 ~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 321 (710)
T TIGR03796 243 RFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDAN 321 (710)
T ss_pred HHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988 6788888777777888888888888899999999998877777666666666666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (461)
+...+..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+......+.......+..+..+++.++. .
T Consensus 322 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~ 401 (710)
T TIGR03796 322 RRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLR 401 (710)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778889999999999999999999999999998877777666555444444444434444333333322221 2
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccC--CCCCCC-CCCcccEEEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--TKPPAS-WPSHGRIELE 236 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~ 236 (461)
...|.+++|.+.++..+...+..++..+...+..++.+..+.+|+.++++.+++.+..... ...... ++..+.|+++
T Consensus 402 v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~ 481 (710)
T TIGR03796 402 VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481 (710)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEE
Confidence 2458899999999999998899999999999999999999999999999876553221100 000001 1234679999
Q ss_pred eEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccC
Q 012523 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 316 (461)
||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++|+||||+
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 99999986656799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 012523 317 PTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (461)
Q Consensus 317 ~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDE 395 (461)
|++|++|++|||.++. ++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|++|||||
T Consensus 562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE 641 (710)
T TIGR03796 562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE 641 (710)
T ss_pred ChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 9999999999998764 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 396 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
|||+||+++|+.+.+.+++ .++|+|+||||+++++.||||++|++|+|++.|.|-.
T Consensus 642 ptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 642 ATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred ccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999986 4899999999999999999999999999999998643
No 12
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.9e-79 Score=670.00 Aligned_cols=445 Identities=22% Similarity=0.320 Sum_probs=379.1
Q ss_pred ccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012523 5 DSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMN 84 (461)
Q Consensus 5 ~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
+++++|++++|+ +|++.++.++...+...+..++.++++++++++++|+++++++..+++.+.+...+.+..++..+..
T Consensus 238 ~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 316 (694)
T TIGR03375 238 RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEES 316 (694)
T ss_pred CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999 7999999888777766677777777777888999999988777666666666666666666666666
Q ss_pred hhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhC
Q 012523 85 GTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IVLLP 162 (461)
Q Consensus 85 ~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 162 (461)
.+..++..+.+.|+++|+++||.++.|+.+.++|.+..++..+...+......+.......+..+..+++.++ .....
T Consensus 317 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~ 396 (694)
T TIGR03375 317 MRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISD 396 (694)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6778889999999999999999999999999999988887766655544444333333333333322222222 12245
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEe
Q 012523 163 GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY 242 (461)
Q Consensus 163 g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y 242 (461)
|.+++|.+.++..+...+..++..+...+..++....+.+|+.++++.+++.+.. .. .....+..+.|+++||+|+|
T Consensus 397 g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~~-~~~~~~~~~~I~~~~vsf~Y 473 (694)
T TIGR03375 397 GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--TR-FLHRPRLQGEIEFRNVSFAY 473 (694)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CC-CCCCCCccceEEEEEEEEEe
Confidence 8899999999999999999999999999999999999999999999876553211 11 11111234679999999999
Q ss_pred CCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc
Q 012523 243 RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 322 (461)
Q Consensus 243 ~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 322 (461)
+++.+++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++
T Consensus 474 ~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~ 553 (694)
T TIGR03375 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG 553 (694)
T ss_pred CCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh
Confidence 76556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCC
Q 012523 323 SVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASID 401 (461)
Q Consensus 323 ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD 401 (461)
|++|||.++. ++++++++++++.++++++++.+|+||||.+||+|.+|||||||||+||||++++|++||||||||+||
T Consensus 554 TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD 633 (694)
T TIGR03375 554 TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633 (694)
T ss_pred hHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 9999999875 488999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 402 SATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 402 ~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
+++|+.+++.+++..+++|+|+||||+++++.||+|++|++|+++|+|.|-.
T Consensus 634 ~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 634 NRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 9999999999999888999999999999999999999999999999999754
No 13
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.9e-79 Score=712.08 Aligned_cols=453 Identities=33% Similarity=0.545 Sum_probs=392.4
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
+.||+++++|++++|+++|++.++..++..+..++..++.+++.++++++.+|.++++++|+.+++..+..++.+..++.
T Consensus 1046 ~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~ 1125 (1560)
T PTZ00243 1046 MSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREI 1125 (1560)
T ss_pred hhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999888888888888888888888888777666776666667777888888888
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (461)
.+......+++.+++.|+++|+++||+|+.++.+.+++.+..+...+..+.......|+.....++..++.++++++.+.
T Consensus 1126 ~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~ 1205 (1560)
T PTZ00243 1126 RRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVI 1205 (1560)
T ss_pred HHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999998888887776666667777776666655543332222211
Q ss_pred --h--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-CC-c----------------
Q 012523 161 --L--PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP-AI-I---------------- 218 (461)
Q Consensus 161 --~--~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~-~~-~---------------- 218 (461)
. .+..++|.+++++.|+..+..++..+...+..++..+.+++|+.++++..++++ .. .
T Consensus 1206 ~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 1285 (1560)
T PTZ00243 1206 GTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADV 1285 (1560)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccc
Confidence 1 244678888888888888888999999999999999999999999996432211 00 0
Q ss_pred ------cCCCCC---CCCCCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce
Q 012523 219 ------EETKPP---ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (461)
Q Consensus 219 ------~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G 289 (461)
++..++ +.++..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|
T Consensus 1286 ~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G 1365 (1560)
T PTZ00243 1286 TGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG 1365 (1560)
T ss_pred ccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 000011 11224578999999999976666799999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCC
Q 012523 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (461)
Q Consensus 290 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~ 369 (461)
+|++||+|+++++.+++|++|+||||||+||+||||+||.++.+++|+++++|++++++++++..+|+||||.+|++|.+
T Consensus 1366 ~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~n 1445 (1560)
T PTZ00243 1366 EIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSN 1445 (1560)
T ss_pred EEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCc
Confidence 99999999999999999999999999999999999999998778899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEc
Q 012523 370 WSVGQRQLFCLGRVLLKR-NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 370 lSgGq~Qrl~lARal~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~ 448 (461)
|||||||||||||||+++ |+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|+||++|+|+|.
T Consensus 1446 LSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1446 YSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999996 8999999999999999999999999998889999999999999999999999999999999
Q ss_pred cchhh
Q 012523 449 NVNFC 453 (461)
Q Consensus 449 ~~~~~ 453 (461)
|.|..
T Consensus 1526 Gt~~e 1530 (1560)
T PTZ00243 1526 GSPRE 1530 (1560)
T ss_pred CCHHH
Confidence 98643
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.4e-79 Score=671.60 Aligned_cols=446 Identities=26% Similarity=0.356 Sum_probs=378.3
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||++.++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.++++++...++.+++...+.+..++..
T Consensus 250 ~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 329 (711)
T TIGR00958 250 GFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLS 329 (711)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999888888888888888888999999999988877766666667777777777777
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+..++..++..+.+.|.++|+++||.|+.|+++.++|.+..++..+...+..............+..+..+++..+ ..
T Consensus 330 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~l 409 (711)
T TIGR00958 330 EELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQL 409 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788889999999999999999999999999999988877666544433222222111122222222111111 12
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.++.|.+.+++.|...+..++..+...+..++++..+.+|+.++++.+++.+.. ... .+.+..+.|+++||+
T Consensus 410 v~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~--~~~~~~~~I~~~nVs 485 (711)
T TIGR00958 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GTL--APLNLEGLIEFQDVS 485 (711)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCC--CCCCCCCeEEEEEEE
Confidence 2458899999999999999999999999999999999999999999999875543211 110 111234679999999
Q ss_pred EEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 240 VRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 240 ~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||+
T Consensus 486 f~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~ 565 (711)
T TIGR00958 486 FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV 565 (711)
T ss_pred EECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc
Confidence 999753 3569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 319 lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
+|++|++|||.++. +.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|++|||||||
T Consensus 566 lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT 645 (711)
T TIGR00958 566 LFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645 (711)
T ss_pred ccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence 99999999999764 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
|+||+++|+.+++ ....+++|+|+||||+++++.||+|++|++|+|+|+|.|-.
T Consensus 646 SaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 646 SALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred cccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHH
Confidence 9999999999998 33346899999999999999999999999999999999754
No 15
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.2e-79 Score=657.22 Aligned_cols=447 Identities=21% Similarity=0.303 Sum_probs=382.6
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.+|++.++|++++|+++|++.++..+...+..++..++.++++++++++++|+++++++..+++..++...+.+..++..
T Consensus 114 ~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 193 (582)
T PRK11176 114 SFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNIS 193 (582)
T ss_pred HHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999988888888888888888888899999999988777666666666666666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+...+..+++.+.+.|.++|+++||+++.++.+.++|++..+...+...+......+.......+..+..+++.++ ..
T Consensus 194 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 273 (582)
T PRK11176 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFP 273 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777889999999999999999999999999999988888777665544444443333333333322222222 12
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.+++.+...+..++..+...+..++....+.+|+.++++.+++.+. +... ..+..+.|+++||+
T Consensus 274 ~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~--~~~~---~~~~~~~i~~~~vs 348 (582)
T PRK11176 274 SVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE--GKRV---IERAKGDIEFRNVT 348 (582)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCcC---CCCCCCeEEEEEEE
Confidence 234889999988888888888889999999999999999999999999986544221 1111 11234579999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||.|+++++.+++|++|+||||||++
T Consensus 349 f~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 349 FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred EecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 99976556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 320 f~~ti~~Nl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
|++|++|||.++. ++++++++++++.++++++++++|+|+||.+|++|.+|||||||||+||||++++|++|||||||
T Consensus 429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 9999999999763 37899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
|+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|+++|.|.|-+
T Consensus 509 saLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999878899999999999999999999999999999998654
No 16
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.8e-79 Score=672.54 Aligned_cols=446 Identities=22% Similarity=0.273 Sum_probs=375.8
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|++ |++.+...+...+...+..++.++++++++++++|+++++++..+++..++...+.+..++..
T Consensus 245 ~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 323 (708)
T TIGR01193 245 SFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLN 323 (708)
T ss_pred HHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998 888888877766666666777777777888899999988877666666666666666666677
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+...+..++..+.+.|+++|+++||++|.|+.+.++|.+..+...+...+......+.......+..+..+++.++ ..
T Consensus 324 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~l 403 (708)
T TIGR01193 324 HDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYL 403 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999999999999999999999999999888777666554443333332222222222222222222 12
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.++..+...+..|+..+...+..++.+..+.+|+.++++.+++.+.. ......++..+.|+++||+
T Consensus 404 v~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 404 VMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK---KKRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc---ccccCCCCCCCcEEEEEEE
Confidence 2458899999999999988899999999999999999999999999999876553221 1101112235679999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++
T Consensus 481 f~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 481 YSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred EEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 999743 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCC--CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 320 FRGSVRTNLDPL--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 320 f~~ti~~Nl~~~--~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
|++||+|||.++ .++++++++++++.+++++++..+|+||||.+|++|.+|||||||||+||||++++|++|||||||
T Consensus 560 f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T 639 (708)
T TIGR01193 560 FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST 639 (708)
T ss_pred hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 999999999986 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
|+||+++|+.+++.|++. +++|+|+||||+++++.||+|++|++|++++.|.|-.
T Consensus 640 s~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 640 SNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred ccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999875 6899999999999999999999999999999999744
No 17
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-78 Score=649.52 Aligned_cols=447 Identities=20% Similarity=0.264 Sum_probs=370.8
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAK-YIQGYYLSSAREL 80 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~ 80 (461)
.||++.++|++++|+++|++.++.++...+..++.+++.+++.++++++++|+++++++...++.. .++.++.+..++.
T Consensus 109 ~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 188 (574)
T PRK11160 109 AGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKP 188 (574)
T ss_pred HhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 578999999999999999999999999888888888888888889999999999887654443333 2344444554555
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-V 159 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 159 (461)
.+...+..+++.+.+.|.++|+++||+|+.|+++.+++.+..++..+...+......+.......+..+..+++.++. .
T Consensus 189 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 268 (574)
T PRK11160 189 GQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAG 268 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666778899999999999999999999999999999888877766555444443333333333333322222221 1
Q ss_pred HhCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 160 LLPGKHLPGFVGLSLSYAL-TLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
...|.++.|.+.+++.|.. ....++..+...+..++++..+.+|+.++++.+++.+.. .... ..+..+.|+++||
T Consensus 269 ~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~--~~~~~~~i~~~~v 344 (574)
T PRK11160 269 GVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP--TTST--AAADQVSLTLNNV 344 (574)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccC--CCCCCCeEEEEEE
Confidence 2357777887766665543 334566667778888899999999999999875542110 0111 1123457999999
Q ss_pred EEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 239 ~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
+|+|+++++++|+|+||+++|||++||+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|++|+||||||+
T Consensus 345 ~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 424 (574)
T PRK11160 345 SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH 424 (574)
T ss_pred EEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccch
Confidence 99997654569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 319 lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
+|++|++||+.++. +.++++++++++.++++++++. |+||||.+||+|.+||||||||++||||++++|++|||||||
T Consensus 425 lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t 503 (574)
T PRK11160 425 LFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503 (574)
T ss_pred hhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999998764 5789999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
|+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|++++.|.|-.
T Consensus 504 s~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 504 EGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999888999999999999999999999999999999998643
No 18
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.7e-78 Score=648.67 Aligned_cols=445 Identities=26% Similarity=0.359 Sum_probs=371.7
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++.+.+...+.+..++..
T Consensus 114 ~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~ 193 (592)
T PRK10790 114 SAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIV 193 (592)
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999888888888888888888888899999887665554444444444444444445
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWL-VLRIETLQNLIILTA-ALLIV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~~ 159 (461)
+...+..+++.+.+.|.++|+++||+|+.++.+.+++.+..++..+...+......+. ......+..+...++ .+...
T Consensus 194 ~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (592)
T PRK10790 194 RRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF 273 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566778889999999999999999999999999887776555443333222221 111222222211111 11112
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.+++.|...+..|+..+...+..+++...+.+|+.++++.++++.. ... .+...+.|+++||+
T Consensus 274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~---~~~~~~~i~~~~v~ 347 (592)
T PRK10790 274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---NDD---RPLQSGRIDIDNVS 347 (592)
T ss_pred HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CCc---cCCCCCeEEEEEEE
Confidence 245888999998888888889999999999999999999999999999986543211 111 11234579999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++ +++|+|+||++++||++||+|+||||||||+++|+|+|+|++|+|.+||.|+++++++++|++|+||||+|.+
T Consensus 348 f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 348 FAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred EEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 999754 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 012523 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (461)
Q Consensus 320 f~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~ 399 (461)
|++|++|||.++.++++++++++++.++++++++++|+||||.+|++|.+|||||||||+||||++++|++||||||||+
T Consensus 427 F~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~ 506 (592)
T PRK10790 427 LADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN 506 (592)
T ss_pred ccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 99999999998777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 400 IDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|.|-.
T Consensus 507 LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 507 IDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999878899999999999999999999999999999999754
No 19
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.5e-78 Score=700.18 Aligned_cols=449 Identities=29% Similarity=0.509 Sum_probs=389.9
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..++..+..++..++.+++.++++++++|+++++++|++++++++..++.+..++..
T Consensus 974 ~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~ 1053 (1490)
T TIGR01271 974 AVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLK 1053 (1490)
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998888888888888999999888777777777777888888888888
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLL 161 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (461)
+.....++++.+++.|++.|+.+||+|+.++++.+++.+..+...+..+.......|+......+..+..+++.++.+ .
T Consensus 1054 ~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~-~ 1132 (1490)
T TIGR01271 1054 QLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAI-G 1132 (1490)
T ss_pred HHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 878888899999999999999999999999999999999888776665555556677766666554433332222221 1
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccC--------------CCCCCCC
Q 012523 162 PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--------------TKPPASW 227 (461)
Q Consensus 162 ~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~--------------~~~~~~~ 227 (461)
......|.++.+++|+..+..++.++...+..+...+.+++|+.++++.++|.+...+. ..++..|
T Consensus 1133 ~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1212 (1490)
T TIGR01271 1133 TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCW 1212 (1490)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCC
Confidence 12334555666677777777788888888888999999999999999876653321110 0112246
Q ss_pred CCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHh
Q 012523 228 PSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 228 ~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r 307 (461)
|..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++ ++|+|++||+|+++++.+++|
T Consensus 1213 p~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR 1291 (1490)
T TIGR01271 1213 PSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWR 1291 (1490)
T ss_pred CCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHH
Confidence 6678999999999998766779999999999999999999999999999999999997 799999999999999999999
Q ss_pred hcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 308 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
++|+||||+|++|+||||+||.++..++|++++++++++++.+++..+|+||||.++++|.+|||||||||||||||+++
T Consensus 1292 ~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1292 KAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred hceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||||+||++|+|+|.|.+.
T Consensus 1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1372 AKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQ 1436 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999998999999999999999999999999999999999854
No 20
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-78 Score=606.61 Aligned_cols=442 Identities=21% Similarity=0.315 Sum_probs=364.6
Q ss_pred cCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 012523 6 STPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPT-VIVAKYIQGYYLSSARELMRMN 84 (461)
Q Consensus 6 ~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
+.++||+++|++.|++.++..+-..+.+++.+++..++..+.+.+++|++++.+... .++.+.++..+.+..++..+..
T Consensus 111 r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l 190 (573)
T COG4987 111 RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHL 190 (573)
T ss_pred hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 468999999999999999999999999999988888888888889999987654333 3334445666666666666666
Q ss_pred hhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-C
Q 012523 85 GTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL-L-P 162 (461)
Q Consensus 85 ~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~ 162 (461)
.+.++.+.+.+.|.+.|..+++.||+++.+.+.+.+..+...+...+..+...|.......+..+.+....++... . .
T Consensus 191 ~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~ 270 (573)
T COG4987 191 AQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGA 270 (573)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 6778889999999999999999999999999999888777777666666655555544444444333322222111 1 1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEE
Q 012523 163 GKHLPGFVGLSLSYALTLSSIQVIMT-RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 241 (461)
Q Consensus 163 g~~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 241 (461)
|........+++..++...+.+..+. ..+....+...|+.|+.++.+.+++.... ...... ....++++||||+
T Consensus 271 G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~---~~~~~~--~~~~l~~~~vsF~ 345 (573)
T COG4987 271 GALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP---DEQTAT--TGQALELRNVSFT 345 (573)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC---ccccCC--ccceeeeccceee
Confidence 44442222233333344444444444 66678889999999999999876553221 111111 1116999999999
Q ss_pred eCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcccc
Q 012523 242 YRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (461)
Q Consensus 242 y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 321 (461)
|+++.+++|+|+||++++||++||+|+|||||||++++++|-|+|++|+|.++|.++..++.+++|+.|++++|.+++|+
T Consensus 346 y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~ 425 (573)
T COG4987 346 YPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS 425 (573)
T ss_pred cCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH
Confidence 99888789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC
Q 012523 322 GSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400 (461)
Q Consensus 322 ~ti~~Nl~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~L 400 (461)
+|+|+|+... .+++||+++++++++|+++++...|+||+|++||.|..||||||||++|||++++|+|++||||||.||
T Consensus 426 ~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegL 505 (573)
T COG4987 426 GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505 (573)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccC
Confidence 9999999876 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 401 DSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 401 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|++||+++++.+.+..++||+|+||||+..++.||||+|||+|+++|+|-|-
T Consensus 506 D~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~ 557 (573)
T COG4987 506 DPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHA 557 (573)
T ss_pred ChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHH
Confidence 9999999999999998999999999999999999999999999999998753
No 21
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.6e-77 Score=638.51 Aligned_cols=424 Identities=23% Similarity=0.293 Sum_probs=350.3
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYI-QGYYLSSAREL 80 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~ 80 (461)
.||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++..+++..++ .....+..++.
T Consensus 102 ~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 181 (529)
T TIGR02868 102 AGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAA 181 (529)
T ss_pred cccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 58999999999999999999999999888888888888888888899999999988776554444333 33333333444
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 158 (461)
.+...+..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..............+..+..+++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (529)
T TIGR02868 182 EVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP 261 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455678889999999999999999999999999999887776665544443333333223333322222222221
Q ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 159 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
....|.+++|.+.+++.+...+..++..+...+..++++..+.+|+.++++.+++.+.. +...+....+..+.|+++||
T Consensus 262 ~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~v 340 (529)
T TIGR02868 262 AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDL 340 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEE
Confidence 12358889998888888888888888889988999999999999999999876542211 00000001123457999999
Q ss_pred EEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 239 ~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
+|+|++++ ++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|.+||+|++++ .+++|++|+||||+|+
T Consensus 341 sf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~ 418 (529)
T TIGR02868 341 SFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAH 418 (529)
T ss_pred EEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcc
Confidence 99997544 599999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 319 lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
+|++||+|||.++. ++++++++++++.+++++++.++|+||||.+||+|.+|||||||||+||||++++|++|||||||
T Consensus 419 lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T 498 (529)
T TIGR02868 419 LFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT 498 (529)
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999864 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCc
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRV 428 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 428 (461)
|+||+++|+.+++.+++..+++|+|+||||+
T Consensus 499 SaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 499 EHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999988899999999995
No 22
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-79 Score=668.83 Aligned_cols=449 Identities=23% Similarity=0.301 Sum_probs=365.8
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
++|||++..|++.+|+++|++.+++.++..+..+++.+.+++..+++.|++.|++++++++..|+.......+.+...+.
T Consensus 119 i~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~ 198 (1228)
T KOG0055|consen 119 IGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKL 198 (1228)
T ss_pred cceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998877776666555555544445
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV- 159 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 159 (461)
..+...+.++..+.+.|++.+++|+.+|+.|++..++|.+.++...+...+.............++.........|+..
T Consensus 199 t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~ 278 (1228)
T KOG0055|consen 199 TEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGST 278 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555556667778999999999999999999999999999988887776554433222222222222222222333321
Q ss_pred -HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 160 -LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 160 -~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
+..+..++|.+...+.....-...+......+..+..+.+++.++++.++..+.......... ......|.|+|+||
T Consensus 279 li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV 356 (1228)
T KOG0055|consen 279 LILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNV 356 (1228)
T ss_pred HHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEE
Confidence 122334444322211111111111222333445677889999999999986544221111111 11235688999999
Q ss_pred EEEeCCCC-CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 239 KVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 239 ~~~y~~~~-~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
+|+||... .++|+|+||+|++|+++||||||||||||++++|.|+|+|++|+|++||.|+++++.+++|++||.|.|||
T Consensus 357 ~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 357 CFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred EecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech
Confidence 99997543 36999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 318 ~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
.||++||+|||.++. +++++++.+|++.++.++|+..+|+||+|.+||+|.+|||||||||||||||++||+||+||||
T Consensus 437 vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEa 516 (1228)
T KOG0055|consen 437 VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEA 516 (1228)
T ss_pred hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCc
Confidence 999999999999875 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
||+||+++|+.++++|++..+++|.|+||||+++++++|+|+||++|+|+|.|.|
T Consensus 517 TSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 517 TSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred ccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999999999999999987
No 23
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.5e-77 Score=641.84 Aligned_cols=447 Identities=23% Similarity=0.372 Sum_probs=387.9
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
++|++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++++.++.+++..++.+..++..
T Consensus 103 ~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~ 182 (571)
T TIGR02203 103 SFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRIS 182 (571)
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999888888888899999999999999999998888777777777777777777777
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+...+..+++.+.+.|.++|+++||.++.++.+.++|.+..+...+...+......+.......+..+..+++.++ ..
T Consensus 183 ~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 262 (571)
T TIGR02203 183 KEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQ 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788899999999999999999999999999999988887776655544444444333333333322222222 12
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.++..+...+..|+..+...+..++++..+.+|+.++++.+++.+. ...+. .+..+.|+++||+
T Consensus 263 ~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~--~~~~~~i~~~~v~ 337 (571)
T TIGR02203 263 AQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAI--ERARGDVEFRNVT 337 (571)
T ss_pred HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCC--CCCCCeEEEEEEE
Confidence 245889999999999999999999999999999999999999999999986544221 11111 1234579999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|++.++++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|.+||+++++++.+++|++++|+||+|++
T Consensus 338 f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 417 (571)
T TIGR02203 338 FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL 417 (571)
T ss_pred EEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc
Confidence 99976555799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 320 f~~ti~~Nl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
|++|++|||.++. +.++++++++++.+++++++.++|+|+||.+|++|.+|||||||||+||||++++|++++|||||
T Consensus 418 f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt 497 (571)
T TIGR02203 418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497 (571)
T ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 9999999999774 58899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
|+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|.|-+
T Consensus 498 s~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 498 SALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999888999999999999999999999999999999998654
No 24
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-77 Score=607.69 Aligned_cols=443 Identities=22% Similarity=0.302 Sum_probs=373.2
Q ss_pred ccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 012523 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVA---IPTVIVAKYIQGYYLSSARE 79 (461)
Q Consensus 3 ~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~---~~~~~~~~~~~~~~~~~~~~ 79 (461)
|-.+.++|++.+.++..++.++.++...++.+..+.+..+..++.+++++|..+++. .|++|+++++ .....++
T Consensus 90 ~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~ 166 (559)
T COG4988 90 FIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKD 166 (559)
T ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhH
Confidence 344678899999999999999999999999999999999999999999999987654 5555555544 3334444
Q ss_pred HHHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 80 LMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV 159 (461)
Q Consensus 80 ~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (461)
..+++......+.+++.|.++|+.|+|.|+..+...++..+...++.+.....-+.....+..++++..+.+..+++...
T Consensus 167 ~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g 246 (559)
T COG4988 167 ASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIG 246 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556778899999999999999999999998888887777766665554444444455566666555544443321
Q ss_pred --HhC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEE
Q 012523 160 --LLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELE 236 (461)
Q Consensus 160 --~~~-g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 236 (461)
+.. |.++.....+++..+..++.|+..++..++.-.++..+.+++..+++.|.+.+... .+....+..+..++++
T Consensus 247 ~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~ 324 (559)
T COG4988 247 FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLE 324 (559)
T ss_pred HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeec
Confidence 234 56776666667777788899999999999998899999999999998765533211 1101111123346666
Q ss_pred eEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccC
Q 012523 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 316 (461)
|++|.|++++ ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++.+++...||+++++|||+
T Consensus 325 ~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 325 NLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred ceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence 9999998665 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 012523 317 PTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (461)
Q Consensus 317 ~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDE 395 (461)
|++|++|+|||+.+++ +.+|++++++++.+++.++++. |+|+||.+||+|.+|||||+||+++|||++++++++++||
T Consensus 404 p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred CccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 9999999999999875 5889999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 396 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|||+||.+||+.+++.|.+..+++|+|+||||+..+..||+|+|||+|+++++|-|.
T Consensus 483 pTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~ 539 (559)
T COG4988 483 PTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHE 539 (559)
T ss_pred CccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHH
Confidence 999999999999999999999999999999999999999999999999999999843
No 25
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.8e-77 Score=650.77 Aligned_cols=447 Identities=26% Similarity=0.358 Sum_probs=379.0
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+ +|++.++.++...+..++..++.++++++++++++|+++++++..++++..+...+.+..++..
T Consensus 228 ~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 306 (694)
T TIGR01846 228 GYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRV 306 (694)
T ss_pred HHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999 6999999888777777776666666777888999999998876666666555555555555555
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (461)
+...+..++..+.+.|+++|+++||++|.|+.+.++|.+..++..+...+......+.......+..+..+++.++. .
T Consensus 307 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 386 (694)
T TIGR01846 307 EDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHL 386 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55556677888999999999999999999999999999888877766555554444444444444333333322222 2
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.++..+...+..|+..+...+..++.+..+.+|+.++++.+++.+.. .... .....+.|+++||+
T Consensus 387 v~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~-~~~~~~~i~~~~vs 462 (694)
T TIGR01846 387 VIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA---GLAA-LPELRGAITFENIR 462 (694)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---CCCC-CCCCCCeEEEEEEE
Confidence 2458899999999989888999999999999999999999999999999876553211 1110 11234679999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++.+++|+|+||+|++||++||+|+||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|+||||++++
T Consensus 463 f~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 463 FRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred EEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence 99976656699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 320 f~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
|++|++||+.+.. +.++++++++++.+++++++.++|+|+||.++++|.+||||||||++||||++++|++||||||||
T Consensus 543 f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts 622 (694)
T TIGR01846 543 FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATS 622 (694)
T ss_pred hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 9999999998754 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|.|-.
T Consensus 623 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 623 ALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999878999999999999999999999999999999998643
No 26
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.3e-77 Score=688.36 Aligned_cols=451 Identities=24% Similarity=0.286 Sum_probs=358.0
Q ss_pred Ccccc--CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 2 LFFDS--TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSS--A 77 (461)
Q Consensus 2 ~~f~~--~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~--~ 77 (461)
.||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++++.++.........+. .
T Consensus 915 ~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 994 (1466)
T PTZ00265 915 SFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTAN 994 (1466)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58885 7899999999999999999888888888888888888888899999999877665544333221111111 1
Q ss_pred HHHHHH-------------hhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 78 RELMRM-------------NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIE 144 (461)
Q Consensus 78 ~~~~~~-------------~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (461)
.+..+. ..+..++..+.+.|+++|+++||+|+.|+++.++|.+..+...+...+......+...+..
T Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1466)
T PTZ00265 995 KDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQ 1074 (1466)
T ss_pred HHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1122345678999999999999999999999999998887776655444433333333333
Q ss_pred HHHHHHHHHHHHHH--HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCC
Q 012523 145 TLQNLIILTAALLI--VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETK 222 (461)
Q Consensus 145 ~l~~~~~~~~~~~~--~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~ 222 (461)
++..+..++++++. ....|.+++|.+..++.+......+...+...+..++.+..+.+|++++++.+++.+.......
T Consensus 1075 ~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~ 1154 (1466)
T PTZ00265 1075 SAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGI 1154 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccc
Confidence 33333333332322 1235888888776655444333334556677788889999999999999987543211101111
Q ss_pred CC-CCCCCcccEEEEeEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC--------------
Q 012523 223 PP-ASWPSHGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-------------- 286 (461)
Q Consensus 223 ~~-~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-------------- 286 (461)
.. ......+.|+|+||+|+|++. +.++|+|+||+|+||+++|||||||||||||+++|+|+|+|
T Consensus 1155 ~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1155 RIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred ccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 00 011234679999999999743 34699999999999999999999999999999999999999
Q ss_pred ----------------------------------------CceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 287 ----------------------------------------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 287 ----------------------------------------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
++|+|++||+|+++++.+++|++||||||||+||++||+|
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIre 1314 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYE 1314 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHH
Confidence 6999999999999999999999999999999999999999
Q ss_pred hcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 012523 327 NLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (461)
Q Consensus 327 Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~ 405 (461)
||.++. +++++++++|++.+++++||..+|+||||.+||+|.+|||||||||||||||+++|+|||||||||+||+++|
T Consensus 1315 NI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1315 NIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 999874 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeC----CEEE-Eccchh
Q 012523 406 AILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSY----GSFS-FNNVNF 452 (461)
Q Consensus 406 ~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~----G~i~-~~~~~~ 452 (461)
+.+++.|++.. +++|+|+||||+++++.||+|+||++ |+++ |+|.|-
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 99999999873 68999999999999999999999999 9965 899864
No 27
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=9.6e-76 Score=632.12 Aligned_cols=448 Identities=21% Similarity=0.279 Sum_probs=375.6
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.+|++.++|++++|+++|++.+...+...+..++..++.+++.++++++++|+++++++.++++..++..++.+..++..
T Consensus 105 ~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~ 184 (588)
T PRK13657 105 AWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQ 184 (588)
T ss_pred HHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999998877777777777777777777888899999988777666666666677777777777
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+...+..+++.+.+.|.++|+++||.|+.++.+.+++.+..++..+...+......+......++..+..+++.++ ..
T Consensus 185 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 264 (588)
T PRK13657 185 AAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAAL 264 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777889999999999999999999999999999888777666544433333332222222222222222222 22
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.+++.+...+..++..+...+..+..+..+.+|+.++++.+++.+.. ..... ..+..+.|+++||+
T Consensus 265 v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~-~~~~~~~I~~~~vs 341 (588)
T PRK13657 265 VQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAID-LGRVKGAVEFDDVS 341 (588)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCC-cCCCCCeEEEEEEE
Confidence 3458899999988888888888888888888888999999999999998764432110 11000 11123579999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++ +++|+|+||+++|||+++|+|+||||||||+|+|+|+|+|++|+|.+||.++++++.+++|++|+||||+|++
T Consensus 342 f~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 420 (588)
T PRK13657 342 FSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420 (588)
T ss_pred EEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc
Confidence 999743 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 320 f~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
|++|++||+.++. +.++++++++++.+++++++.++|+|+||.++++|.+||||||||++||||++++|+++|||||||
T Consensus 421 f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts 500 (588)
T PRK13657 421 FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATS 500 (588)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999874 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|.|-+
T Consensus 501 ~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 501 ALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999998877999999999999999999999999999999998643
No 28
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7e-76 Score=626.02 Aligned_cols=434 Identities=21% Similarity=0.303 Sum_probs=361.2
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++...++..++...+.++.++..
T Consensus 93 ~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~ 172 (529)
T TIGR02857 93 GWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAA 172 (529)
T ss_pred hhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999988887878888888888888888999999887766555555444445555555555
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAA-LL-IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~ 159 (461)
+...+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+.......+..+..+++. +. ..
T Consensus 173 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (529)
T TIGR02857 173 RKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFR 252 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677889999999999999999999999999998877776665444333333333223333322222211 11 12
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.++.|.+.++..+...+..++..+...+..++.+..+.+|+.++++.+++... .. + ...+..+.|+++||+
T Consensus 253 ~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~-~~~~~~~~i~~~~v~ 327 (529)
T TIGR02857 253 LLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-P-VTAAPAPSLEFSGLS 327 (529)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-C-CCCCCCCeEEEEEEE
Confidence 235788999888888888888888888888899999999999999999985432111 11 1 111123479999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++.+++|+|+||+|+|||+++|+||||||||||+|+|+|+|+|++|+|.+||.|+++++.+++|++++||||+|++
T Consensus 328 f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~l 407 (529)
T TIGR02857 328 VAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL 407 (529)
T ss_pred EECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcc
Confidence 99976555699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 320 f~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
|++|++||+.++. +.++++++++++.++++++++++|+||||.+|++|.+||||||||++||||++++|+++|||||||
T Consensus 408 f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts 487 (529)
T TIGR02857 408 FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTA 487 (529)
T ss_pred cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9999999998764 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEE
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 488 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 488 HLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999987899999999999999999999986
No 29
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.8e-75 Score=625.61 Aligned_cols=446 Identities=20% Similarity=0.292 Sum_probs=370.9
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVM-ASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
.||+++++|++++|+++|++.++..+...+..++..++..++.++++ ++++|+++++++..+++..++...+.+..++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998777777777776655555555444 57899988877666666666666666666666
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--I 158 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~ 158 (461)
.+...+..+++.+.+.|.++|+++||+|+.++.+.++|.+..++..+...+......+..........+..+++.++ .
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677889999999999999999999999999999887776665554433333322222222222222221111 1
Q ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 159 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
....|.+++|.+.++..|...+..|+..+...+..++.+..+.+|+.++++.+++.+. .... ..+..+.|+++|+
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~--~~~~~~~I~~~~v 319 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEP--VPEGRGELDVNIR 319 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCC--CCCCCCcEEEEEE
Confidence 2235889999998888888888888888999999999999999999999986543211 1111 1112457999999
Q ss_pred EEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 239 ~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
+|+|+++++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||+++.+++..++|++++|+||+|+
T Consensus 320 ~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 99997655569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 319 LFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 319 lf~~ti~~Nl~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
+|++|++||+.++ .+.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|++|||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 9999999999876 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|+++++|.|-
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 534 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHD 534 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHH
Confidence 9999999999999999887899999999999999999999999999999999853
No 30
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.9e-75 Score=625.09 Aligned_cols=450 Identities=24% Similarity=0.360 Sum_probs=376.9
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.+|++.++|++++|+++|++.++.++...+..++..++.+++.++++++++|+++++++...++...+..++.+..++..
T Consensus 107 ~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~ 186 (576)
T TIGR02204 107 SFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLS 186 (576)
T ss_pred HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999988888888888888888888889999999987766655555555555666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+...+..+++.+.+.|.++|+++||.++.++.+.++|.+..++..+...+......+.......+..+..+++.++ ..
T Consensus 187 ~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 266 (576)
T TIGR02204 187 RESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHD 266 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778889999999999999999999999999999888877666544443333333322222222211111111 12
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.++.|.+.++..+...+..++..+...+..+..+..+.+|+.++++.+++.+...... ....+..+.|+++||+
T Consensus 267 v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~ 344 (576)
T TIGR02204 267 VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK--TLPVPLRGEIEFEQVN 344 (576)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCc--cCCcCCCceEEEEEEE
Confidence 24588899998888888888889999999999999999999999999998654422111011 1111234579999999
Q ss_pred EEeCCCC-CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 240 VRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 240 ~~y~~~~-~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
|+|+++. +++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||.++++++..++|++|+|+||+|+
T Consensus 345 f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~ 424 (576)
T TIGR02204 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424 (576)
T ss_pred EECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc
Confidence 9997532 569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 319 lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
+|++|++||+.++. +.++++++++++.+++.++++.+|+|++|.++++|.+||||||||++||||++++|++|||||||
T Consensus 425 lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt 504 (576)
T TIGR02204 425 LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504 (576)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc
Confidence 99999999999754 56889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
|+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|.+-+
T Consensus 505 s~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 505 SALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence 99999999999999999878999999999999999999999999999999998643
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.7e-74 Score=620.84 Aligned_cols=447 Identities=20% Similarity=0.261 Sum_probs=374.7
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++.++++..++...+.++.++..
T Consensus 105 ~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 184 (585)
T TIGR01192 105 SWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQ 184 (585)
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999888888877777777777777888999999998877777776766777777666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+...+..+++.+.+.|.++|+++||+|+.++.+.+++.+..++..+...+..............+..+..+++.++ ..
T Consensus 185 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~ 264 (585)
T TIGR01192 185 AAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVL 264 (585)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777888999999999999999999999999999887776555443333222222222222222222222222 12
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.++..+...+..++..+...+..+..+..+.+|+.++++.+++.+. ...+.......+.++++||+
T Consensus 265 v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~v~ 341 (585)
T TIGR01192 265 VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADAPELPNVKGAVEFRHIT 341 (585)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccCCCCCCCCCeEEEEEEE
Confidence 245889999998888888888888988999999999999999999999876443211 11110111124569999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++++++.+++|++++||||+|++
T Consensus 342 ~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 342 FEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred EECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 9997543 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 320 f~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
|++|++||+.++. +.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|++||||||||
T Consensus 421 f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts 500 (585)
T TIGR01192 421 FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATS 500 (585)
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999999998763 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|.|-
T Consensus 501 ~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 501 ALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 999999999999999887899999999999999999999999999999999864
No 32
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-74 Score=579.44 Aligned_cols=440 Identities=25% Similarity=0.333 Sum_probs=347.4
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVM-ASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
.||.++.+|++.+.+......+...+...+..++..++.+......+ .-..+..+++++..+..+..+.........+.
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 57889999999999999998888887777666666555544444332 23455555555544444443221111111222
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL-IV 159 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 159 (461)
.+....+.......+.|++.+.++||.||.|++..++|......+.+...+... ++ .++++.+.++..+.... +.
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~---sl-~~lnfgQ~~iFsv~~~~im~ 278 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSS---SL-AFLNFGQKAIFSVALTFIMV 278 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHh---HH-HHHHHHHHHHHHHHHHHHHH
Confidence 222333455566788999999999999999999999999888777665443332 22 23344444333221111 11
Q ss_pred -----HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEE
Q 012523 160 -----LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIE 234 (461)
Q Consensus 160 -----~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 234 (461)
...+.++.|.+.....+.+.+..++..++..+..+.++......++...+... ...+. +.+....+++|+
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~---~i~~~--~~~i~~~~~~I~ 353 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE---DIQEA--ALPIELFGGSIE 353 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh---hhhhc--cCCcccCCCcEE
Confidence 12367888888888888888999999999888888877777666654433211 11111 111112456799
Q ss_pred EEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEc
Q 012523 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (461)
Q Consensus 235 ~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 314 (461)
|+||+|.|+++. ++|+++||+|++||+|||||+|||||||++|+|+|+++ ++|+|++||+++++++++.+|+.|||||
T Consensus 354 F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 354 FDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EEeeEEEeCCCC-ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 999999997554 59999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 012523 315 QEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (461)
Q Consensus 315 Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliL 393 (461)
||..||++||.+||.+++ .++++++.++|+++++++.+.++|+||+|.+||+|..||||||||+++|||+++||||+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 999999999999999875 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 394 DEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 394 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|||||+||.+||+.+.+.+.+...++|+|+|.||+++++.||+|+++|+|++.|.|.|-
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ 570 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHS 570 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHH
Confidence 99999999999999999999988899999999999999999999999999999999863
No 33
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.9e-73 Score=603.61 Aligned_cols=438 Identities=18% Similarity=0.206 Sum_probs=357.3
Q ss_pred CccHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012523 8 PVGRIFTRVSSDMSTMDFDLPS-AISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGT 86 (461)
Q Consensus 8 ~~G~l~srl~~d~~~i~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
..+...+++++|++.++..+.. .+..++..++.++ .++++++++|+++++++...++.+++..++.+..++..+...+
T Consensus 96 ~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~ 174 (544)
T TIGR01842 96 RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATE 174 (544)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3467789999999999987766 4444444444443 4467788999988766555444444444444544555555666
Q ss_pred ccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCC
Q 012523 87 TKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IVLLPGK 164 (461)
Q Consensus 87 ~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~ 164 (461)
..+++.+.+.|.++|+++||+|+.++.+.++|.+..++..+...+..............+..+..+++.++ .....|.
T Consensus 175 ~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ 254 (544)
T TIGR01842 175 ASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGE 254 (544)
T ss_pred HHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77888999999999999999999999999999888777666554433333222222222222222222222 1223588
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCC
Q 012523 165 HLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRP 244 (461)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~ 244 (461)
+++|.+.+++.+...+..++..+...+..++.+..+.+|+.++++.+++.+. .... .+..+.++++||+|+|++
T Consensus 255 it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~---~~~~~~i~~~~v~~~y~~ 328 (544)
T TIGR01842 255 ITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPL---PEPEGHLSVENVTIVPPG 328 (544)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCC---CCCCCeEEEEEEEEEcCC
Confidence 9999999888888888899999999999999999999999999986544221 1111 112356999999999976
Q ss_pred CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccH
Q 012523 245 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSV 324 (461)
Q Consensus 245 ~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti 324 (461)
+++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||.++.+++.+++|+.++||||+|++|++|+
T Consensus 329 ~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 408 (544)
T TIGR01842 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV 408 (544)
T ss_pred CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence 55569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 012523 325 RTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (461)
Q Consensus 325 ~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~ 403 (461)
+||+.++. +.++++++++++.++++++++.+|+|+||.+|++|.+||||||||++||||++++|++||||||||+||++
T Consensus 409 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~ 488 (544)
T TIGR01842 409 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488 (544)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHH
Confidence 99998654 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 404 TDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 404 ~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
+++.+.+.+++.. +++|+|+||||++.++.||+|++|++|++++.|.|-
T Consensus 489 ~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~ 538 (544)
T TIGR01842 489 GEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERD 538 (544)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHH
Confidence 9999999999875 579999999999999999999999999999999853
No 34
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-76 Score=579.52 Aligned_cols=438 Identities=22% Similarity=0.356 Sum_probs=356.0
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHhHHHHHHHHHHHHHHH----HHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAV-MASVTWPVLIVAIPTVIVAKYI----QGYYLS 75 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~l~~~~~~~~~~~~----~~~~~~ 75 (461)
+.|+-++++|+++.-++...+.+. ++...+.++...++.+.+.++. ...++|++.+++..+..++..+ ..+-.+
T Consensus 307 lrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk 385 (790)
T KOG0056|consen 307 LRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTK 385 (790)
T ss_pred eeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHH
Confidence 368888999999988887776665 4444444443444444444333 3357899988887777666643 222222
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 76 SARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAA 155 (461)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 155 (461)
..+++.....+++ +.-.|++-+.+++|-|++|++..++|.+...++++...+....... ++..++.+..+.+
T Consensus 386 ~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnf----LN~~Qn~Ii~lgl 457 (790)
T KOG0056|consen 386 ARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNF----LNIVQNGIIGLGL 457 (790)
T ss_pred HHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhHH
Confidence 3333333233333 3455889999999999999999999999999988876655443332 3333333332221
Q ss_pred HHH------HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCC
Q 012523 156 LLI------VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPS 229 (461)
Q Consensus 156 ~~~------~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (461)
+.. ....+..++|.++.+.+|+..+..|+++++..+..+++.....++++++++.++|-.+ .+..++ -...
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--~P~a~p-l~~~ 534 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--LPGAPP-LKVT 534 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--CCCCCC-cccc
Confidence 111 1113667899999999999999999999999999999999999999999986544221 111111 1124
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
.|.|+|+||+|.|+++ +++|+||||++.||+.+|+|||||+||||++++|.|+|+.++|.|.+||+|++.....++|++
T Consensus 535 ~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 6899999999999765 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
||+||||..||++||..||.+.+ .+++||+.+|++.+++|+-|..+|+||+|.+||+|-.||||||||+||||+++++|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 99999999999999999999875 68999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 389 RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
.+++|||+||+||..+|+.|+.+|.+...++|.|+|+||++++-+||.|+|+++|+|+|.|-|
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~H 756 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRH 756 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcH
Confidence 999999999999999999999999999889999999999999999999999999999999986
No 35
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.3e-71 Score=588.70 Aligned_cols=438 Identities=18% Similarity=0.169 Sum_probs=345.1
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++.++.. +..++..++.+++.++++++++|.++++++..+++.+++..+..++.++..
T Consensus 102 ~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~ 180 (555)
T TIGR01194 102 EEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFF 180 (555)
T ss_pred HHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988764 666777777788888889999999988776655555554444444444445
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMD--MFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (461)
+...+..+++.+.+.|.++|++++|+|+.++ ...+++.+..++..+..................+..+...+..++ .
T Consensus 181 ~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 259 (555)
T TIGR01194 181 HAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFA-A 259 (555)
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 5555667789999999999999999999954 445666665555544433222111111111111111111111111 1
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC---ccCCCC--CCCCCCcccEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAI---IEETKP--PASWPSHGRIE 234 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~i~ 234 (461)
...+.++.|.+.+++.+...+..|+..+...+..++.+..+.+|+.++++.+++++.. .+.... .......+.|+
T Consensus 260 ~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 339 (555)
T TIGR01194 260 AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339 (555)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEE
Confidence 1236788998888889888899999999999999999999999999998642221110 000000 00011235799
Q ss_pred EEeEEEEeCCC---CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 235 LEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 235 ~~~v~~~y~~~---~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
++||+|+|++. .+++|+|+||++++||++||+||||||||||+++|+|+|+|++|+|.+||.++++++..++|++++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 419 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc
Confidence 99999999753 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
||+|++++|++|+++|+. .+.++++++++++.++++++++.+|+||||. .+||||||||++||||++++|++|
T Consensus 420 ~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 420 AIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred EEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999963 4567889999999999999999999999995 789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH-HH-cCCcEEEEEccCchhhhhcCEEEEEeCCEEEEc
Q 012523 392 ILDEATASIDSATDAILQRIIR-EE-FPGSTVITIAHRVPTITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~-~~-~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~ 448 (461)
|||||||+||+++++.+.+.+. .. .+++|+|+||||+++++.||+|++|++|+++|.
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999988664 33 458999999999999999999999999999864
No 36
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-72 Score=546.83 Aligned_cols=443 Identities=23% Similarity=0.320 Sum_probs=364.5
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIA-VMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
.|+-++.+|.+...+......++..+...+...+..++-+....+ +...++|+.+++++..++++.++......-....
T Consensus 31 ~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~ 110 (497)
T COG5265 31 RFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF 110 (497)
T ss_pred hhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHH
Confidence 466677888887777777766776666666665555555544433 3446889988877777666665432222212222
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--- 157 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 157 (461)
.+...++.++..+...|++-+.+++|.|+.|+.+..+|.+..+.+.+...+......|+. +.++++.......
T Consensus 111 rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln----~gQ~~I~~~~l~~~m~ 186 (497)
T COG5265 111 RRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLN----FGQTAIFSTGLRVMMT 186 (497)
T ss_pred HHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHh
Confidence 333345667778889999999999999999999999999999888887666554444443 3333332221111
Q ss_pred ---HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCC-CCcccE
Q 012523 158 ---IVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASW-PSHGRI 233 (461)
Q Consensus 158 ---~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 233 (461)
.-...++++.|.++..-.+...++.|+..++..+.++.++....++++++++.+.+.... +. .+.-+ ...+.+
T Consensus 187 ~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~--pd-a~~L~~~~~g~v 263 (497)
T COG5265 187 MSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDA--PD-APPLWPVRLGAV 263 (497)
T ss_pred hcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccC--CC-CccccccccceE
Confidence 112348899999999889999999999999999999999999999999998865543221 11 11122 235779
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
.|+||+|.|.+.. ++|+++||++++|+++|+|||||+||||++++|.|+|++++|.|.+||+|+++...+.+|+.||.|
T Consensus 264 ~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 264 AFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence 9999999997654 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 314 PQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 314 ~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
|||..||++|+..|+.+++ .+++++++.+++.++++++++.+|+||+|.|||+|-.||||||||+||||+++++|+||+
T Consensus 343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999875 689999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|||+||+||..||+.++..|++..+++|.++|+||++++-+||.|+||++|+|+|.|-|-
T Consensus 423 ~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~ 482 (497)
T COG5265 423 LDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHE 482 (497)
T ss_pred EehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHH
Confidence 999999999999999999999999999999999999999999999999999999999874
No 37
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.8e-70 Score=628.77 Aligned_cols=438 Identities=18% Similarity=0.242 Sum_probs=352.8
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||++.++|++.+|+++|++.++..+...+..++..++++++.++++++++|.++++++.++++++++..++.+..+...
T Consensus 146 ~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~ 225 (1466)
T PTZ00265 146 QFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINK 225 (1466)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999887777776666666666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV-- 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 159 (461)
+...+..++..+.+.|+++|+++||+|+.|+++.++|.+..+...+...+.............++..+..++++++..
T Consensus 226 ~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~l 305 (1466)
T PTZ00265 226 KTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRI 305 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 656666678999999999999999999999999999988777766655444433333222333332222222222211
Q ss_pred HhCC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcc
Q 012523 160 LLPG--------KHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHG 231 (461)
Q Consensus 160 ~~~g--------~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (461)
...| .+++|.+.+++.+.......+..+...+..++.+..+.+|+.++++.+++.+.. ..... .+..+
T Consensus 306 v~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~~~---~~~~~ 381 (1466)
T PTZ00265 306 IISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DDGKK---LKDIK 381 (1466)
T ss_pred HHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCcc---CCCCC
Confidence 1222 345554444333222222222334445677888999999999999876542211 11111 11224
Q ss_pred cEEEEeEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEE-CCEeCCCCCHHHHhhc
Q 012523 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-DGLDICSMGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i-~g~~i~~~~~~~~r~~ 309 (461)
.|+++||+|+|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+ ||.++.+++..++|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 69999999999743 236999999999999999999999999999999999999999999999 5799999999999999
Q ss_pred ceEEccCCccccccHHhhcCCCC---------------------------------------------------------
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLG--------------------------------------------------------- 332 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~--------------------------------------------------------- 332 (461)
||||+|+|.+|++|++|||.++.
T Consensus 462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 99999999999999999997631
Q ss_pred -CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 012523 333 -MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRI 411 (461)
Q Consensus 333 -~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~ 411 (461)
+.++++++++++.+++++++..+|+||||.+|++|.+||||||||++||||++++|++||||||||+||+++++.+++.
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~ 621 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 2356789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc--CCcEEEEEccCchhhhhcCEEEEEeCC
Q 012523 412 IREEF--PGSTVITIAHRVPTITDSDMVMVLSYG 443 (461)
Q Consensus 412 l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G 443 (461)
|++.. +++|+|+||||+++++.||+|++|++|
T Consensus 622 L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 622 INNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 99875 479999999999999999999999986
No 38
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8e-68 Score=528.24 Aligned_cols=429 Identities=20% Similarity=0.257 Sum_probs=337.1
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHH
Q 012523 18 SDMSTMDFDLPSA-ISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAA 96 (461)
Q Consensus 18 ~d~~~i~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (461)
+|.++++.+++.. +..++..-. +-+++.++|.++|++.++++...++.+.+...-....++-.++..+...+.+....
T Consensus 124 rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~ 202 (580)
T COG4618 124 RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLAD 202 (580)
T ss_pred hhHHHHHHHHcCCCcchhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 5777777766542 222222222 33566777888999887765544444433333333333334444455666778888
Q ss_pred HHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHHHHHH
Q 012523 97 ETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IVLLPGKHLPGFVGLSL 174 (461)
Q Consensus 97 e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~~~~g~~~~~~ 174 (461)
.+.++.++|++.|+.....++|.+....+........-....+......+-.+....++.+ ++...+++++|.+.+..
T Consensus 203 a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~S 282 (580)
T COG4618 203 ATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGS 282 (580)
T ss_pred HHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHH
Confidence 9999999999999999999999888777766554443333333333222222222211111 11235889999877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcccccee
Q 012523 175 SYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGIT 254 (461)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~ 254 (461)
.++.....|+......|.++..++.|++|+.++++..++... . ..-+..++.+.++++++.-|+.++++++++|
T Consensus 283 Il~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~--m~LP~P~g~L~Ve~l~~~PPg~~~pil~~is 356 (580)
T COG4618 283 ILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----R--MPLPAPQGALSVERLTAAPPGQKKPILKGIS 356 (580)
T ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----C--CCCCCCCceeeEeeeeecCCCCCCcceecce
Confidence 555555556666777788999999999999999986544321 1 1111246789999999977777778999999
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCC-CC
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL-GM 333 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~-~~ 333 (461)
|++++||-+||+||||||||||.|+|.|.++|.+|.|++||-++..++++.+-++|||+||+..||+|||.|||+-+ ++
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~ 436 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE 436 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999754 47
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 012523 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIR 413 (461)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~ 413 (461)
.+++++.+|++.++.||.|.++|+||||.+|+.|..|||||||||+||||++.+|.+++||||.|+||.+.|+.+.++|.
T Consensus 437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~ 516 (580)
T COG4618 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL 516 (580)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 414 EEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 414 ~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
+.+ ++.|+|+||||++.+..+|+|++|++|++-..|+.-.
T Consensus 517 ~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 517 AAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred HHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHH
Confidence 854 5899999999999999999999999999998888433
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.3e-67 Score=607.70 Aligned_cols=429 Identities=17% Similarity=0.251 Sum_probs=331.0
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVA---IPTVIVAKYIQGYYLSSAR 78 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~---~~~~~~~~~~~~~~~~~~~ 78 (461)
.+|++.++|++++++++|++.++..+. .+..++...+.+++++++++ +.+++++ ++++++...+..++.+..+
T Consensus 390 ~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l~~pl~~~~~~~~~ 465 (1495)
T PLN03232 390 EARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFLLIPLQTLIVRKMR 465 (1495)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999988763 44444444444444333322 2222221 1111222223334444455
Q ss_pred HHHHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (461)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (461)
+..+...+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+......+..........++.++.....
T Consensus 466 ~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~ 545 (1495)
T PLN03232 466 KLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVF 545 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556677788999999999999999999999999998877776665444333222221111111111111111112
Q ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 159 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
....+.+++|.+.+++.+...+..|+..++..+..+.++..+.+|+.++++.+++... .. +. ..+..+.|+++|+
T Consensus 546 ~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~---~~-~~-~~~~~~~I~~~~v 620 (1495)
T PLN03232 546 VLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA---QN-PP-LQPGAPAISIKNG 620 (1495)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cc-CC-cCCCCCcEEEEee
Confidence 2235778899888888888888888888999999999999999999999986543211 11 10 0112346999999
Q ss_pred EEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 239 ~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++|+||+|+|
T Consensus 621 sF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p 688 (1495)
T PLN03232 621 YFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVS 688 (1495)
T ss_pred EEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCcc
Confidence 9999753 35699999999999999999999999999999999999999998763 3577899999999
Q ss_pred ccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 318 TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 318 ~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
++|++||||||.++.++++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+||||||
T Consensus 689 ~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 689 WIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred ccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999988788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 398 ASIDSATDAILQR-IIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 398 s~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
|+||+++++.+.+ .++...+++|+|+||||++.++.||+|++|++|+|+++|.+
T Consensus 769 SaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred cccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCH
Confidence 9999999987765 46656678999999999999999999999999999999974
No 40
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.4e-66 Score=553.02 Aligned_cols=431 Identities=16% Similarity=0.140 Sum_probs=322.7
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.+...+. .+..++.+++.++++++++++++|.+++++++.+++.+++..++.++.++..
T Consensus 97 ~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 175 (547)
T PRK10522 97 ERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHM 175 (547)
T ss_pred HHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999987665 3566777788888888889999999998877776666666666666655555
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMM---DMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (461)
++..+..+++.+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..............+..+ ...+.++.
T Consensus 176 ~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 253 (547)
T PRK10522 176 ATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLG-AIGLVFYM 253 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6666778889999999999999995 4443 35566666655554433322221111111111111111 11111111
Q ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 159 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
....+....+....+..+...+..++..+...+..++.+..+.+|+.++.+.+++.+. +.. .. .+..+.++++||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~~-~~--~~~~~~i~~~~v 328 (547)
T PRK10522 254 ANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PRP-QA--FPDWQTLELRNV 328 (547)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--ccc-cc--cCcCceEEEEEE
Confidence 1001112233333333333345567778888888999999999999998765432211 111 10 112347999999
Q ss_pred EEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 239 ~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|++++|||||++
T Consensus 329 ~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 407 (547)
T PRK10522 329 TFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH 407 (547)
T ss_pred EEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChh
Confidence 9999743 459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 319 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 319 lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
+|++|+++| ..+.++++++++++.+++.+.+.. |+|. .+|.+||||||||++||||++++|++||||||||
T Consensus 408 lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 408 LFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred HHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 999999998 234567778888888777665542 3332 1478999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 399 SIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
+||+++++.+.+.+.+.. +++|+|+||||++.++.||+|++|++|+++|..-
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999987643 4799999999999999999999999999998643
No 41
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-66 Score=604.88 Aligned_cols=431 Identities=17% Similarity=0.252 Sum_probs=331.6
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.++++.++|++++++++|++.++..+. .+..++...+.+++.+++++..-.+.+++.++++++.+.+..++.+..++..
T Consensus 390 ~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~ 468 (1622)
T PLN03130 390 EGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLT 468 (1622)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999998874 3445555555544444433321111122222222233333344444444555
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLL 161 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (461)
+...+...+..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+......+..........++.++........
T Consensus 469 ~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~ 548 (1622)
T PLN03130 469 KEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLL 548 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555677888999999999999999999999999998877776654433322222211111111111111111122234
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEE
Q 012523 162 PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 241 (461)
Q Consensus 162 ~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 241 (461)
.+.+++|.+.+++.+...+..|+..++..+..+.++..+.+|+.++++.++..+. +. +. ..+..+.|+++|++|+
T Consensus 549 ~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~---~~-~~-~~~~~~~I~~~nvsf~ 623 (1622)
T PLN03130 549 GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL---PN-PP-LEPGLPAISIKNGYFS 623 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cC-Cc-ccCCCCceEEEeeEEE
Confidence 5788999888888888888888888999999999999999999999976433211 01 10 0112346999999999
Q ss_pred eCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCc-eEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 242 YRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 242 y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+ |.+|+||+|+|++
T Consensus 624 y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~L 690 (1622)
T PLN03130 624 WDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWI 690 (1622)
T ss_pred ccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCcccc
Confidence 9743 3569999999999999999999999999999999999999999 99974 4589999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 012523 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (461)
Q Consensus 320 f~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~ 399 (461)
|++||||||.++.++++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+
T Consensus 691 fngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 691 FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred CCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 99999999998878889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 400 IDSATDAILQ-RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 400 LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
||+++++.+. +.++...+++|+|+|||+++.++.||+|++|++|+|+++|.+
T Consensus 771 LD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred cCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999988775 566666678999999999999999999999999999999974
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2e-61 Score=524.46 Aligned_cols=424 Identities=13% Similarity=0.090 Sum_probs=340.5
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMAS-VTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
.||++ ++|++.+|+++|++.+...+...+..++..++.++++++.++. ++|.++++++...++..++.+++.++..+.
T Consensus 188 ~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~ 266 (659)
T TIGR00954 188 SNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKL 266 (659)
T ss_pred ccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHH
Confidence 46675 7899999999999999999999999999999888888777775 899998888777787788888888888888
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLI--ILTAALL- 157 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~- 157 (461)
.+..++..+++.+.+.|.++|+++||.|+.++.+.+++++..++..+...+......+......++.... .++..+.
T Consensus 267 ~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g 346 (659)
T TIGR00954 267 TVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVS 346 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999988887777666555544444444444333211 1111111
Q ss_pred H-HHh-C----CCccHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-------CCccC
Q 012523 158 I-VLL-P----GKHLPGFVGL-SLSY---ALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP-------AIIEE 220 (461)
Q Consensus 158 ~-~~~-~----g~~~~g~~~~-~~~~---~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~-------~~~~~ 220 (461)
. +.. . |.++.|.... ++.+ +..+..++..+...+..++++.++.+|+.++++.+++.. ...+.
T Consensus 347 ~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~ 426 (659)
T TIGR00954 347 IPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEI 426 (659)
T ss_pred HHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 1 111 1 5667665433 4444 445577888888899999999999999999997532210 00000
Q ss_pred CC-------------CCCCCCCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC
Q 012523 221 TK-------------PPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE 287 (461)
Q Consensus 221 ~~-------------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~ 287 (461)
.. ........+.|+++||+|.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~ 505 (659)
T TIGR00954 427 ESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY 505 (659)
T ss_pred cccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 00 00000123569999999999643 35999999999999999999999999999999999999999
Q ss_pred ceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCC--------CCCHHHHHHHHHHccHHHHHHhCCCcc
Q 012523 288 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--------MYSDNEIWEAMEKCQLKATISRLPMLL 359 (461)
Q Consensus 288 ~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~--------~~~~~~~~~~~~~~~l~~~i~~l~~gl 359 (461)
+|+|.+++ |++++||||+|.+|++|++||+.+.. ..++++++++++.++++++++. |.|+
T Consensus 506 ~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~ 573 (659)
T TIGR00954 506 GGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGW 573 (659)
T ss_pred CCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCc
Confidence 99998864 56899999999999999999997532 2467788999999999999887 9999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEE
Q 012523 360 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 360 ~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~v 439 (461)
||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++. ++|+|+||||++.++.||++++
T Consensus 574 ~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~ 650 (659)
T TIGR00954 574 SAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLY 650 (659)
T ss_pred ccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEE
Confidence 99876 56799999999999999999999999999999999999999999999874 7999999999999999999999
Q ss_pred EeC
Q 012523 440 LSY 442 (461)
Q Consensus 440 l~~ 442 (461)
|++
T Consensus 651 l~~ 653 (659)
T TIGR00954 651 MDG 653 (659)
T ss_pred EeC
Confidence 974
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.7e-61 Score=558.42 Aligned_cols=433 Identities=18% Similarity=0.235 Sum_probs=326.4
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.++++.++|++++++++|++.+..... .+..++...+.+++++++++..-.+.+++.+.++++.+.+...+.+..++..
T Consensus 407 ~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 485 (1522)
T TIGR00957 407 SARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQ 485 (1522)
T ss_pred hhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999887553 4555555555555444443322122222222222223333333444444444
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLII-LTAALLIVL 160 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 160 (461)
+...+...+..+.+.|.++|+++||.+++|+.+.+++++..++..+...+......+. ........++. ++.+.....
T Consensus 486 ~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~ 564 (1522)
T TIGR00957 486 VAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVG-TFTWVCTPFLVALITFAVYVT 564 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4455566778899999999999999999999999999888777665443322222111 11111111111 111111112
Q ss_pred hC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 161 LP--GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 161 ~~--g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
.. +.++.+....++.+...+..|+..++..+..+.++..+.+|+.++++.+++.+...+... ......+.|+++|+
T Consensus 565 ~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~~ 642 (1522)
T TIGR00957 565 VDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRT--IKPGEGNSITVHNA 642 (1522)
T ss_pred hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccc--cCCCCCCcEEEEEe
Confidence 22 345666666666777777788888999999999999999999999986543221100000 00011236999999
Q ss_pred EEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 239 ~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+|| +|+||||+|+
T Consensus 643 ~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~ 709 (1522)
T TIGR00957 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAW 709 (1522)
T ss_pred EEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCcc
Confidence 999975545699999999999999999999999999999999999999999999987 5999999999
Q ss_pred cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 319 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 319 lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
+|++|++|||.++.+.++++..++++.+++.+++..+|+|++|.+|++|.+||||||||++||||++++|++++||||||
T Consensus 710 l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 710 IQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred ccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999999876677778888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH---HcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 399 SIDSATDAILQRIIRE---EFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~---~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
+||+.+++.+.+.+.+ ..+++|+|+|||+++.++.||+|++|++|+|+++|.+
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCH
Confidence 9999999999998863 3468999999999999999999999999999998874
No 44
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-60 Score=533.20 Aligned_cols=429 Identities=20% Similarity=0.295 Sum_probs=338.2
Q ss_pred cCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012523 6 STPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNG 85 (461)
Q Consensus 6 ~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
..+.|+++|-++.|++.+++..... ..+..+-+.+++++.+++..--+.+++.+.+.++++.++.+..+..++.++...
T Consensus 295 ~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m 373 (1381)
T KOG0054|consen 295 ETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLM 373 (1381)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999998876654 344444455555444443322222333333444444455555555555555556
Q ss_pred hccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC
Q 012523 86 TTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV-LLPGK 164 (461)
Q Consensus 86 ~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~ 164 (461)
+.+.+....+.|.++|+++||.|++|+.|.++..+..++..+...+.................++.++.+...+ ...+.
T Consensus 374 ~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~ 453 (1381)
T KOG0054|consen 374 KRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNL 453 (1381)
T ss_pred hhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 67778888999999999999999999999999998888777765554444433333333333333333333333 22345
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCC
Q 012523 165 HLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRP 244 (461)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~ 244 (461)
.++......+++...+..|+..++..+..+.++.+|.+|+.+++..++..+..... ....+....++++|.+|++++
T Consensus 454 lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~ 530 (1381)
T KOG0054|consen 454 LTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDS 530 (1381)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCC
Confidence 56656667777888888888889999999999999999999999865433221110 011123446999999999976
Q ss_pred C-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcccccc
Q 012523 245 N-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS 323 (461)
Q Consensus 245 ~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~t 323 (461)
+ .++.|+||||+|++|+.+|||||.|||||||+.+|+|..+..+|++.++|. ++||||+|++|+||
T Consensus 531 ~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngT 597 (1381)
T KOG0054|consen 531 ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGT 597 (1381)
T ss_pred CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCc
Confidence 3 345999999999999999999999999999999999999999999999993 99999999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 012523 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (461)
Q Consensus 324 i~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~ 403 (461)
|||||.|+.++++++.+++++.|+|++.++.+|.|-.|.+||+|.+|||||||||+||||+++|++|++||+|.|++|..
T Consensus 598 vreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDah 677 (1381)
T KOG0054|consen 598 VRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAH 677 (1381)
T ss_pred HHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHh
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 404 TDAI-LQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 404 ~~~~-i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
+.+. +.+.++...++||+|+|||.++.+++||+|++|++|+|+++|..
T Consensus 678 vg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 678 VGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred hhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCH
Confidence 8664 45567667789999999999999999999999999999999983
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.4e-58 Score=536.52 Aligned_cols=426 Identities=16% Similarity=0.243 Sum_probs=325.3
Q ss_pred ccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMR 82 (461)
Q Consensus 3 ~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
.+++.++|++++++++|++.+...+... ..+....+.+++++++++....+.+++.+.++++.+.+..++.+...+..+
T Consensus 172 ~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~ 250 (1490)
T TIGR01271 172 VLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRD 250 (1490)
T ss_pred HhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999998876554 334344444555555555444444444444444445555555555555555
Q ss_pred HhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 012523 83 MNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLLP 162 (461)
Q Consensus 83 ~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 162 (461)
.......+..+.+.|.++|+++||.|++|+.+.+++.+..+...+...+......+..........++.++.+..+.+.
T Consensus 251 ~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~- 329 (1490)
T TIGR01271 251 KRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALI- 329 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 5666777888999999999999999999999999998888777665544333222221111111111111111111122
Q ss_pred CCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEE
Q 012523 163 GKHLPGFVGLSLSYALTLSSIQ-VIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 241 (461)
Q Consensus 163 g~~~~g~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 241 (461)
+..+++.+.++++++..+..++ ..++..+..+.++.++++||.+++..++..+. .. . .....++++|++|.
T Consensus 330 ~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~---~~--~---~~~~~i~~~~~~f~ 401 (1490)
T TIGR01271 330 KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL---EY--N---LTTTEVEMVNVTAS 401 (1490)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc---cc--c---CCCCceEEecceEe
Confidence 2345666666666666665554 46888888899999999999999976433210 00 0 11235888899888
Q ss_pred eCCC--------------------------------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce
Q 012523 242 YRPN--------------------------------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (461)
Q Consensus 242 y~~~--------------------------------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G 289 (461)
|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G 481 (1490)
T TIGR01271 402 WDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG 481 (1490)
T ss_pred cCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 8421 13589999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCC
Q 012523 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (461)
Q Consensus 290 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~ 369 (461)
+|.++| +|+||+|+|++|++|++|||.++..+++++..++++.+++.+.+..+|+|++|.+|++|.+
T Consensus 482 ~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~ 548 (1490)
T TIGR01271 482 KIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGIT 548 (1490)
T ss_pred eEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCC
Confidence 999998 4999999999999999999987655666677788899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEc
Q 012523 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRI-IREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 370 lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~ 448 (461)
||||||||++||||++++|+++|||||||+||+.+++.+.+. +....+++|+|+|||+++.++.||+|++|++|++++.
T Consensus 549 LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999874 6666678999999999999999999999999999998
Q ss_pred cch
Q 012523 449 NVN 451 (461)
Q Consensus 449 ~~~ 451 (461)
|.+
T Consensus 629 g~~ 631 (1490)
T TIGR01271 629 GTF 631 (1490)
T ss_pred cCH
Confidence 873
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.5e-56 Score=521.96 Aligned_cols=431 Identities=18% Similarity=0.262 Sum_probs=332.7
Q ss_pred CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012523 7 TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGT 86 (461)
Q Consensus 7 ~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
.++|+++|.+++|++.+..++.. +..++...+.+++++++++.+..+.+++.++++++.+.+..+..+......+....
T Consensus 341 ~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~ 419 (1560)
T PTZ00243 341 MNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAK 419 (1560)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999988754 44555566666666666665555555555555555555666666666666666666
Q ss_pred ccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 012523 87 TKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLLPGKHL 166 (461)
Q Consensus 87 ~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 166 (461)
...+..+.+.|.++|+++||.+++|+.|.+++.+..+...+...+......+..........++.+++++.+....+.++
T Consensus 420 ~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt 499 (1560)
T PTZ00243 420 AADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELT 499 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 77788899999999999999999999999999988877776644433333332222222222222222222333457889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC----Ccc---------CC-C----------
Q 012523 167 PGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPA----IIE---------ET-K---------- 222 (461)
Q Consensus 167 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~----~~~---------~~-~---------- 222 (461)
++.++++++++..+..|+..++..+..+.++.+|++||.++++.++.... ..+ .. .
T Consensus 500 ~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1560)
T PTZ00243 500 PEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDV 579 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccc
Confidence 99998999988888889999999999999999999999999976431100 000 00 0
Q ss_pred ----C---------------------------CCCCCCcccEEEEeEEEEeC----------------------------
Q 012523 223 ----P---------------------------PASWPSHGRIELEDLKVRYR---------------------------- 243 (461)
Q Consensus 223 ----~---------------------------~~~~~~~~~i~~~~v~~~y~---------------------------- 243 (461)
+ +......+.+.++|++|.++
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1560)
T PTZ00243 580 TAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKT 659 (1560)
T ss_pred cccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00000113467777776532
Q ss_pred ----------CCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 244 ----------PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 244 ----------~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
.+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ ++|+|+
T Consensus 660 ~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv 726 (1560)
T PTZ00243 660 PKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYV 726 (1560)
T ss_pred cccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEE
Confidence 112358999999999999999999999999999999999999999999863 469999
Q ss_pred ccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 012523 314 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (461)
Q Consensus 314 ~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliL 393 (461)
||+|++|++|++||+.++.+.+++++.++++.+++++.++.+|+|++|.+|++|.+||||||||++||||++.+|+++||
T Consensus 727 ~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illL 806 (1560)
T PTZ00243 727 PQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL 806 (1560)
T ss_pred eCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999987655556677888999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHH-HHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 394 DEATASIDSATDAILQRI-IREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 394 DEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
|||||+||+.+.+.+.+. +....+++|+|+|||+++.++.||+|++|++|+++++|.+
T Consensus 807 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~ 865 (1560)
T PTZ00243 807 DDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSS 865 (1560)
T ss_pred cCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999987777654 4444468999999999999999999999999999998874
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.6e-54 Score=421.13 Aligned_cols=220 Identities=36% Similarity=0.657 Sum_probs=208.2
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
|.|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.++..++..++|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3589999999997555569999999999999999999999999999999999998 799999999999999999999999
Q ss_pred eEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 311 ~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
+|+||+|.+|++|+++|+.++...++++++++++.+++.++++.+|.++++.++++|.+||||||||++||||++++|++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999975555678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
|||||||++||+.+++.+++.|++..+++|+|+||||++.+..||||++|++|++++.|..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~ 220 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSI 220 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCH
Confidence 9999999999999999999999987778999999999999999999999999999998874
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-53 Score=386.75 Aligned_cols=206 Identities=28% Similarity=0.441 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC-CCHHHHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-MGLKDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~-~~~~~~r~~i 310 (461)
.|+++||+++|++. .+|+|||++|++||+++|+||||||||||+++|.+|-+|++|+|.+||.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 38999999999643 49999999999999999999999999999999999999999999999987743 3677899999
Q ss_pred eEEccCCccccc-cHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
|+|+|+..||+- |+.||+.... ..+. +...+.++++|+.+-.+..| .+|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999965 9999997532 2233 23456788899988888887 56899999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||+.+|+++++|||||||||+....+++.++++. .+.|+++|||.+...+. ||||+.||+|+|+++|.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecC
Confidence 99999999999999999999999999999999865 48899999999999988 89999999999999875
No 49
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=396.42 Aligned_cols=209 Identities=27% Similarity=0.419 Sum_probs=185.6
Q ss_pred EEEEeEEEEeCCC---CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH---HH
Q 012523 233 IELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DL 306 (461)
Q Consensus 233 i~~~~v~~~y~~~---~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~---~~ 306 (461)
|++++||+.|+.. ...+|+|+||+|++||++||+|+||||||||++++.+|-.|++|+|.+||.++..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 24589999999999999999999999999999999999999999999999999888765 56
Q ss_pred hhcceEEccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 307 RTKLSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 307 r~~i~~v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
|++||+++|++.|++ .|+.+|+.+.- ..++ +++.+.++.+|+.+..++.| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 788999999999997 59999998531 2333 34566788888888777776 67999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
+|||||+.+|++|++|||||+|||+|.+.|+++|++.. -+-|+++|||.++.++. |||+.||++|+++|+|...
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~ 227 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVS 227 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHH
Confidence 99999999999999999999999999999999998753 38899999999999998 9999999999999999744
No 50
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-50 Score=383.49 Aligned_cols=220 Identities=56% Similarity=0.941 Sum_probs=205.1
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
+.++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 35899999999975444699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 311 ~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
+|+||++.+|+.|++||+.+......+++.++++..++.+++..+|.|+++..++...+|||||+||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999986555566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
+||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999998766789999999999998899999999999998774
No 51
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-50 Score=405.66 Aligned_cols=218 Identities=22% Similarity=0.352 Sum_probs=190.4
Q ss_pred CCCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC-
Q 012523 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS- 300 (461)
Q Consensus 227 ~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~- 300 (461)
|+..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 55667899999999997544569999999999999999999999999999999999997 579999999999973
Q ss_pred -CCHHHHhhcceEEccCCccccccHHhhcCCCC---CCCHHHH-----HHHHHHccHHHHHHhCCCcccccccCCCCCCC
Q 012523 301 -MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDNEI-----WEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (461)
Q Consensus 301 -~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~~~~~~-----~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lS 371 (461)
.+...+|+.++||||+|.+|++|+++|+.+.. ..++++. .++++.+++ +.++++.+++++.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCC
Confidence 44567889999999999999999999998532 2333332 344555543 3456678899999999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 372 gGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++++.. ||||++|++|+|++.|.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778999999999999887 99999999999999887
Q ss_pred h
Q 012523 451 N 451 (461)
Q Consensus 451 ~ 451 (461)
.
T Consensus 308 ~ 308 (329)
T PRK14257 308 T 308 (329)
T ss_pred H
Confidence 4
No 52
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-51 Score=370.79 Aligned_cols=212 Identities=24% Similarity=0.380 Sum_probs=189.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCc-----eEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-----GRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~-----G~i~i~g~~i~~--~~~~ 304 (461)
.++++|+++.|+. +.+|+|||++|++++++|++|||||||||+++++.|+.+..+ |+|.++|+++.+ ++.-
T Consensus 7 ~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 5899999999963 349999999999999999999999999999999999999875 999999999976 5688
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCCC---C-C---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y-S---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---~-~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
++|+++|+|+|.|.-|+.||+||+.++.. . + |+-++++++.+.|++.+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 99999999999999999999999986521 1 1 3446788999999876653 2446678899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
|||||||+-+|++|+||||||+|||.+..+|.+++.+++++-||++|||.+.-..+ +|+..++..|+++|.|.|-
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999888999999999987766 8999999999999999864
No 53
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=378.46 Aligned_cols=205 Identities=30% Similarity=0.450 Sum_probs=183.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+|+|||++|. ++.+++|+||+|++||.++++|||||||||++|+|.|+++|++|+|++||+++++++..++|++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 78999999996 3459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHH--HHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~--~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|-|..-||+ .||.|||.... .+++ ++..+.++.++++ ++..+.| .+|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 999999996 59999997532 2344 3456677788875 4777777 568999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhh-hhcCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~d~i~vl~~G~i~~~~~ 450 (461)
||+.+|++++||||++||||.++..+++.+.+..+ ++|+|+|||+++.. +.+|||.+|++|+|+..+.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCC
Confidence 99999999999999999999999999999887543 89999999999764 5699999999999997664
No 54
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=8e-50 Score=382.89 Aligned_cols=218 Identities=36% Similarity=0.584 Sum_probs=199.9
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|+...+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996544569999999999999999999999999999999999999999999999999987777788889999
Q ss_pred EccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
+||++.+|+.|+.||+.+.. ....+++.+.++..++.+++..+|.|+++.....+.+||||||||++||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997643 23455666777888899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~ 219 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGS 219 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999998777899999999999998899999999999999876
No 55
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-49 Score=384.49 Aligned_cols=224 Identities=50% Similarity=0.794 Sum_probs=206.0
Q ss_pred CcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhh
Q 012523 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 308 (461)
Q Consensus 229 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~ 308 (461)
..+.|+++|++++|++....+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45789999999999754346999999999999999999999999999999999999999999999999998888888899
Q ss_pred cceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 309 KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
.++|++|++.+|++|+++|+.+......++++++++..++.+.++.+|.|+++.+++.+.+|||||+||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999754333455677888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 389 RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
++|||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|..-
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPE 239 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999876789999999999999889999999999999988743
No 56
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.7e-49 Score=374.97 Aligned_cols=218 Identities=32% Similarity=0.538 Sum_probs=198.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|+++.|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999643345999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
|++|++.+|..|+.||+.+.. ...++++.+.++..++.+.++..|.|+++.+.+...+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999889999997543 2345567788899999999999999999999988999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEcc
Q 012523 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~ 449 (461)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999876668999999999988789999999999998764
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-49 Score=375.83 Aligned_cols=218 Identities=38% Similarity=0.618 Sum_probs=201.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999632 34999999999999999999999999999999999999999999999999998877778889999
Q ss_pred EEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
|+||++.+|.+|++||+.+.. ....+++.++++..++.++++.+|.|+++.++....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999997653 3345667778888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
+||||||++||+.+.+.+.+.+++..+++|+|++||+++.++.||++++|++|++++.|.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGT 220 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCC
Confidence 999999999999999999999998767899999999999988899999999999998776
No 58
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-49 Score=375.79 Aligned_cols=218 Identities=33% Similarity=0.524 Sum_probs=199.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++.+.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999996543359999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
++|++.+|+.|++||+.+.. ....+++.+.++..++.++++.+|.|+++..+....+||||||||++||||++++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998653 33455666778888999999999999999999899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~ 219 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGT 219 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCC
Confidence 99999999999999999999998877899999999999998899999999999998876
No 59
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.6e-49 Score=366.59 Aligned_cols=205 Identities=29% Similarity=0.427 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---H-
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L- 306 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~- 306 (461)
++++||++.|..+. ..+|+++||+|++||.++|+||||||||||+++|.|+..|++|.|.++|.|+..++.++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 35899999999999999999999999999999999999999999999999999888543 3
Q ss_pred hhcceEEccCCccccc-cHHhhcCC---CCCCC----HHHHHHHHHHccHHHHHH-hCCCcccccccCCCCCCChhHHHH
Q 012523 307 RTKLSIIPQEPTLFRG-SVRTNLDP---LGMYS----DNEIWEAMEKCQLKATIS-RLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 307 r~~i~~v~Q~~~lf~~-ti~~Nl~~---~~~~~----~~~~~~~~~~~~l~~~i~-~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
|++||||+|+..|.+. |++||+.+ ..... ++.....++..++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 4669999999999865 99999973 11111 334455666667765544 434 6799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEEEc
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~ 448 (461)
+||||||+.+|++++.||||.+||.++.+.+++.+++.. .++|+|+|||++.....|||++.|++|++...
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~~ 223 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeeec
Confidence 999999999999999999999999999999999999863 37899999999999999999999999995543
No 60
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.1e-49 Score=374.75 Aligned_cols=207 Identities=29% Similarity=0.441 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++|+|+ ++++++|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|.+||+++.+++.+++.+++|
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 488999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcc-ccccHHhhcCCCC--------CCCH---HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 312 IIPQEPTL-FRGSVRTNLDPLG--------MYSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 312 ~v~Q~~~l-f~~ti~~Nl~~~~--------~~~~---~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
||||++.. |.-||+|-+.+++ ..++ +.+.++++..++.++.++. -..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 99999754 5669998876442 1122 2467789999998876653 3579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhh-hhcCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTI-TDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~d~i~vl~~G~i~~~~~~ 451 (461)
|||||+++|++|+||||||+||...+.++++.+++.. +++|+|++.|+++.. ++||++++|++|+++.+|..
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p 223 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTP 223 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCc
Confidence 9999999999999999999999999999999999865 379999999999865 56999999999999998873
No 61
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-49 Score=368.64 Aligned_cols=196 Identities=27% Similarity=0.385 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.+++++|++.|+. ..+|+|+||+|++||+++|+||||||||||+|+++|+.+|++|+|.++|.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999965 4599999999999999999999999999999999999999999999999988443 34699
Q ss_pred EEccCCccccc-cHHhhcCCCCCC-------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGMY-------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||+|++.||+- |+++|+.+.-+. ..+...+.++.+|+.++-+..| .+||||||||+|||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 99999999986 999999764221 1345778889999998888887 5689999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeC--CEE
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GSF 445 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~--G~i 445 (461)
|+.+|++|+||||+++||+.|+..+++.+.+.. .++|+++|||+.+..-. +|||++|.+ |+|
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999999988854 36899999999987655 999999999 555
No 62
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-48 Score=372.77 Aligned_cols=217 Identities=36% Similarity=0.585 Sum_probs=199.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|+++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 349999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
++|++.+|+.|+++|+.+.. ..+++++.++++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 34556677788888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
||||||++||+.+.+.+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~ 218 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGT 218 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCC
Confidence 99999999999999999999998766889999999999998899999999999998765
No 63
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.7e-48 Score=363.83 Aligned_cols=205 Identities=57% Similarity=0.942 Sum_probs=181.5
Q ss_pred CCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHh
Q 012523 228 PSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 228 ~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r 307 (461)
+..+.++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++|
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 44567999999999975434699999999999999999999999999999999999999999999999999888888888
Q ss_pred hcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 308 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
+.++|+||++.+|++|+++|+.+.....++++.++++ +.+....|||||+||++||||++.+
T Consensus 82 ~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999997544344444333332 2345688999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|.
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999999999998767899999999999988899999999999998775
No 64
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.9e-48 Score=372.36 Aligned_cols=218 Identities=35% Similarity=0.608 Sum_probs=198.2
Q ss_pred EEEEeEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 233 IELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
++++|+++.|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999643 245999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
|++|++.+|+.|++||+.+.. ....+++.+.++..++.+++..+|.|+++.......+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999899999997642 2344556677788889999999999999999988999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.++.||++++|++|++++.|.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~ 220 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGT 220 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999998767889999999999998899999999999998876
No 65
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.8e-49 Score=349.13 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH---HHhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~---~~r~~ 309 (461)
|+|+||+++|+++ +++|+|+||+|++||.+-++||||||||||+|+|++...|+.|+|.++|.|++.+..+ .+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999876 6799999999999999999999999999999999999999999999999999887654 58999
Q ss_pred ceEEccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
||+|+||..|... |+.||+++.- ... .+++.++++.+||.+-...+| ..|||||+||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999998755 9999997531 122 356778999999999999998 46899999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||++.+|++||-||||.+|||++...+++.+.+.. .|.||+++||+.+.+.. --|++.+++|+++.++.
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999998864 48999999999999988 58999999999987543
No 66
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=360.48 Aligned_cols=209 Identities=28% Similarity=0.447 Sum_probs=178.7
Q ss_pred cEEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC-HHHHhh
Q 012523 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~-~~~~r~ 308 (461)
.++++|+++.|+... .++++||||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999996543 14999999999999999999999999999999999999999999999998776533 336778
Q ss_pred cceEEccCCcc-c--cccHHhhcC----CCC-CCCHHHHHHHHHHccHH-HHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 309 KLSIIPQEPTL-F--RGSVRTNLD----PLG-MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 309 ~i~~v~Q~~~l-f--~~ti~~Nl~----~~~-~~~~~~~~~~~~~~~l~-~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
.+.+|+|||+- + .-|+++-|. ..+ +-...+++++++.+|+. ++.++.| .+|||||+||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999973 2 237776663 111 22345688999999985 4666766 458999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||||.-+|++||+|||||+||...+..+++++.+..+ +-|.|+|||+++.+.+ ||||+||++|+++|.+++
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeech
Confidence 99999999999999999999999999999999988665 5599999999999998 999999999999998874
No 67
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-48 Score=366.59 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=175.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++|+|++. ++|+||||++++|++++|+||||||||||+|+++|+.+|++|+|.++|.+..+... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 49999999999644 49999999999999999999999999999999999999999999999988765432 46899
Q ss_pred EEccCCc---cccccHHhhcCCCCC--------C---CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 312 IIPQEPT---LFRGSVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 312 ~v~Q~~~---lf~~ti~~Nl~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
||||... -|+.||+|-+.++.. . +.+++.++++.+++.++.++- -.+|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-----------i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-----------IGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-----------ccccCcHHHHH
Confidence 9999653 478899998865421 1 236789999999998876542 35699999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+.|||||+++|++|+|||||+|+|+.++..+.+.|+++++ ++||++|||+++.+.. ||+|+.|+ ++++..|+.
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~ 222 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPP 222 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccCh
Confidence 9999999999999999999999999999999999999765 8999999999998765 99999995 455566653
No 68
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.7e-48 Score=390.64 Aligned_cols=208 Identities=25% Similarity=0.391 Sum_probs=180.2
Q ss_pred EEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---Hh
Q 012523 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (461)
Q Consensus 233 i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~r 307 (461)
|+++||+++|+.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998887654 47
Q ss_pred hcceEEccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 308 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
++|+|+||++.+|+ .|++||+.+.. ..++ +++.++++.+++.+..+.. ..+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 78999999999995 69999997421 1222 3355667777776655444 3679999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||||+.+|++|+||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999998643 7899999999999865 999999999999998874
No 69
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-48 Score=357.19 Aligned_cols=206 Identities=27% Similarity=0.469 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH---HHhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~---~~r~ 308 (461)
.|++++|+++|++ +.+++|+||+|++||+++|+||||||||||+|++.|+++|++|+|.++|.++.+++.. ++|+
T Consensus 8 ~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5999999999953 3599999999999999999999999999999999999999999999999999988865 4689
Q ss_pred cceEEccCCccccc-cHHhhcCCC-C---CCCHHHHH----HHHHHccHHHH-HHhCCCcccccccCCCCCCChhHHHHH
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPL-G---MYSDNEIW----EAMEKCQLKAT-ISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~-~---~~~~~~~~----~~~~~~~l~~~-i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
++|+++|..-||+. ||+||+.+. . ..+++.++ ..++.+||... .+..| .+||||+++|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHHH
Confidence 99999999999976 999999852 2 33444443 34566777665 45555 67999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||||++.||+++++|||||||||.+...+-++++++.+ +.|+++|||+++++.. |||++++.+|+|+..|+
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999898887654 7899999999998876 89999999999999998
No 70
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-48 Score=380.74 Aligned_cols=205 Identities=25% Similarity=0.418 Sum_probs=183.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++||++.|++.. +++|+||+|++||.++++|||||||||||++|+||.+|++|+|.|||.+++++++++ +.||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999996432 899999999999999999999999999999999999999999999999999999875 7899
Q ss_pred EEccCCccccc-cHHhhcCCCCC---C----CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
+|+|++.||+- ||+||+.+.-. . -++++.++++..++.+.+++.| .+||||||||+|+|||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999965 99999986421 1 2456788999999999999888 5689999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+++|++++||||+|+||+..+..+...+++..+ +.|+|.||||...... +|||.||++|+|.+.|..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p 218 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTP 218 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCCh
Confidence 9999999999999999999998888888777543 6899999999877665 999999999999987763
No 71
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.1e-47 Score=365.55 Aligned_cols=216 Identities=31% Similarity=0.506 Sum_probs=193.8
Q ss_pred cccEEEEeEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhh
Q 012523 230 HGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 308 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~ 308 (461)
.+.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999643 235999999999999999999999999999999999999999999999999988777777788
Q ss_pred cceEEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 309 KLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
.++|++|++.+|+.|++||+.+.. .....++.+..+..++.++++.+|.|+++.+.+...+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999997532 2333444555666778899999998999989999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEE
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSF 445 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i 445 (461)
|+++||||||++||+.+.+.+.+.+++..+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999987667899999999999988999999999974
No 72
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.5e-48 Score=366.37 Aligned_cols=202 Identities=23% Similarity=0.398 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH---HHhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~---~~r~~ 309 (461)
++++|++++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964334599999999999999999999999999999999999999999999999998766543 46788
Q ss_pred ceEEccCCcccc-ccHHhhcCCCC---CC----CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~-~ti~~Nl~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
++|+||++.+|. .|++||+.+.. .. .++++.++++..++.+..+..| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 59999996421 11 1234566777777765554433 57999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
|||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998864 37899999999998875 999999999985
No 73
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-48 Score=368.56 Aligned_cols=205 Identities=28% Similarity=0.434 Sum_probs=174.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH---HHHhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~---~~~r~~ 309 (461)
|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 468999999953 359999999999999999999999999999999999999999999999999887664 467888
Q ss_pred ceEEccCCccccc-cHHhhcCCCC----CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLG----MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l 380 (461)
++|+||++.+|+. |++||+.+.. ..+.+ ++.++++..++.++. .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 9999999999876 9999996531 12222 234445555543333 33446799999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~ 220 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecC
Confidence 9999999999999999999999999999999988643 7899999999998875 99999999999998876
No 74
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-48 Score=364.48 Aligned_cols=207 Identities=32% Similarity=0.481 Sum_probs=186.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC-CCCHHHHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC-SMGLKDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~-~~~~~~~r~~i 310 (461)
.++++|++|+|+++ .++|+++|++|++||.++|+|+||||||||++++.|+++|++|.|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48899999999766 56999999999999999999999999999999999999999999999999988 47788999999
Q ss_pred eEEccCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
|||+|+| .+|..||.+.+.|+. ..+. +++.++++.+++.++.++-| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 689999999998753 2333 34667888888888766655 67999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
.+|+.+|++||||||||+||+...+.+++.++++.+ ++|+|++||+++.+.. |||+++|++|+++.+|.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 999999999999999999999999999999999764 4799999999999877 99999999999999887
No 75
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-47 Score=338.06 Aligned_cols=201 Identities=26% Similarity=0.400 Sum_probs=178.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
+.+++|.|.|... =-.++++|++||++||+||||||||||+++++|+..|.+|+|.|||+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5678999999532 2358899999999999999999999999999999999999999999999877764 467999
Q ss_pred EccCCccccc-cHHhhcCCCCC----C---CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPLGM----Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~~----~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++||..||.- ||.+|+.++.+ . ..+++..++..+|+..+.+++| .+||||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999965 99999976521 2 2456888999999999999999 46899999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+|+.|||+||||+|+|||.-+..+..++.+.. ++.|+++|||.++.+.. +||++++++|+|.++|+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999988887743 47899999999998876 99999999999999988
No 76
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.5e-47 Score=364.73 Aligned_cols=207 Identities=30% Similarity=0.454 Sum_probs=176.9
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC-----CCCceEEEECCEeCCCCC--HHH
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILIDGLDICSMG--LKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~-----~~~~G~i~i~g~~i~~~~--~~~ 305 (461)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 478999999964 35999999999999999999999999999999999999 999999999999987766 556
Q ss_pred HhhcceEEccCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
+++.++|+||++.+|..|++||+.+.. .. . ++++.++++..++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 788999999999999779999997531 11 1 2344556666666544433211 46899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999987555899999999998765 99999999999998876
No 77
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-47 Score=361.09 Aligned_cols=202 Identities=26% Similarity=0.372 Sum_probs=171.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 468999999964 359999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EccCCcccc-ccHHhhcCCCCC---CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFR-GSVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+||++.+|. .|++||+.+... .. ++++.++++..++.++.+ ....+||||||||++||||+
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHH
Confidence 999999886 599999964311 11 123445555555544433 33467999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
+++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999998765 9999999999998765
No 78
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-47 Score=378.75 Aligned_cols=215 Identities=23% Similarity=0.354 Sum_probs=179.2
Q ss_pred ccEEEEeEEEEeCCC---CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC------
Q 012523 231 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------ 301 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~------ 301 (461)
..|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999642 23599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhhcceEEccCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCccc-ccccC
Q 012523 302 ----------GLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSD 365 (461)
Q Consensus 302 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~ 365 (461)
+...+|+.++||+|+| .+|+.|++||+.+.. ..+.++..+ . ..++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3456789999999998 688899999997542 123332211 1 12334433 343 34566
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCC
Q 012523 366 EGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYG 443 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G 443 (461)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|++.. +++|+|+|||+++.+. .||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999999999998753 4789999999999775 59999999999
Q ss_pred EEEEccchh
Q 012523 444 SFSFNNVNF 452 (461)
Q Consensus 444 ~i~~~~~~~ 452 (461)
++++.|.+.
T Consensus 253 ~i~~~g~~~ 261 (320)
T PRK13631 253 KILKTGTPY 261 (320)
T ss_pred EEEEeCCHH
Confidence 999998754
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.4e-47 Score=362.72 Aligned_cols=202 Identities=27% Similarity=0.407 Sum_probs=169.8
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH----H
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----L 306 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~----~ 306 (461)
|+++||+++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 45999999999999999999999999999999999999999999999999988766432 3
Q ss_pred hhcceEEccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 307 RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 307 r~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
++.++|++|++.+|.. |++||+.+.. ... ++++.++++..++.+ .......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHHHHHHH
Confidence 5689999999999876 9999997531 111 123344444444433 33444578999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEE
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSF 445 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i 445 (461)
+||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998653 7899999999998888999999999974
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-47 Score=373.11 Aligned_cols=208 Identities=27% Similarity=0.418 Sum_probs=181.6
Q ss_pred cEEEEeEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
.++++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999887777888999
Q ss_pred eEEccCCc--cccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~~--lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
+|++|+|. ++..|++||+.+.. ..+. +++.++++.+++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 55679999997532 1222 34566777777766655443 67999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
||++.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+..||||++|++|++++.|.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~ 223 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTST 223 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999988643 789999999999988899999999999998776
No 81
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.7e-47 Score=354.52 Aligned_cols=199 Identities=26% Similarity=0.431 Sum_probs=180.4
Q ss_pred EEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999996542 3599999999999999999999999999999999999999999999998 5
Q ss_pred ceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
|+|++|+|.+|+.|++||+.+....++++..++++.+++.+++..+|.|+++.+.+...+||+|||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754445566777888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 390 ILILDEATASIDSATDAILQR-IIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
++||||||++||+.+.+.+.+ .++... +++|+|++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888877 455543 4689999999999998899999999985
No 82
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-47 Score=363.08 Aligned_cols=208 Identities=22% Similarity=0.365 Sum_probs=176.2
Q ss_pred cEEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---H
Q 012523 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~ 306 (461)
.++++||++.|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-hcceEEccCCccccc-cHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 307 R-TKLSIIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 307 r-~~i~~v~Q~~~lf~~-ti~~Nl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
| +.++|+||++.+|+. |+++|+.+. ..... +++.++++..++.+ .......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-----------RANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHH
Confidence 3 679999999998875 999998642 11121 23344455544433 3344457899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998863 4789999999999999889999999999998876
No 83
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-47 Score=371.51 Aligned_cols=208 Identities=27% Similarity=0.418 Sum_probs=181.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 35999999999999999999999999999999999999999999999999998888788888999
Q ss_pred EEccCC--ccccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 312 IIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 312 ~v~Q~~--~lf~~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|+||+| .++..|+.+|+.+.. ..+ ++++.++++.+++.+..++.| .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 577889999997531 122 234566777777766655544 579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
||+.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|..
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999998864 3789999999999885 5999999999999998873
No 84
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.5e-47 Score=359.73 Aligned_cols=207 Identities=23% Similarity=0.355 Sum_probs=175.7
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++||++.|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999964324599999999999999999999999999999999999999999999999998754 3567788999
Q ss_pred EccCCccc-cccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLF-RGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf-~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++|++.+| ..|+++|+.+.. .... +++.++++..++.+..+ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999988 569999996421 1122 23445555555544332 33467999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 216 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSP 216 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999987667999999999998865 999999999999998874
No 85
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.3e-47 Score=356.11 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=170.2
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999642 359999999999999999999999999999999999999999999999998753 4567789999
Q ss_pred ccCC--ccccccHHhhcCCCCC---CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 314 PQEP--TLFRGSVRTNLDPLGM---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 314 ~Q~~--~lf~~ti~~Nl~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
+|++ .+|..|++||+.+... ..++++.++++..++.++.+..| ..||||||||++||||++.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 3677899999975321 12345677777777766554443 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 389 RILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
++|+|||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999886 457899999999999875 9999999999975
No 86
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-47 Score=348.67 Aligned_cols=208 Identities=28% Similarity=0.454 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH---HHHhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~---~~~r~ 308 (461)
.|+++||+..||++ ..+|+||||+|++||.++|+||||||||||++.|.|+.+|++|+|.++|.++..++. +.+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999744 469999999999999999999999999999999999999999999999999988874 46788
Q ss_pred cceEEccCCccccc-cHHhhcCCC------------CCCCHH---HHHHHHHHccHHHHHHhCCCcccccccCCCCCCCh
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPL------------GMYSDN---EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 372 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~------------~~~~~~---~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSg 372 (461)
++|+++|.+.|.+. |+.+|+..+ +.++++ ...++++++|+.+..- .+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCCc
Confidence 89999999999865 999998422 223433 3456777777766443 34578999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREE--FPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 373 Gq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
||+||++|||||+.+|++++-|||+++|||.+.+.+++.|++. ..+.|+|+.-|.++..+. ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 9999999999999999999999999999999999999999985 357999999999998865 9999999999999999
Q ss_pred ch
Q 012523 450 VN 451 (461)
Q Consensus 450 ~~ 451 (461)
+.
T Consensus 231 ~~ 232 (258)
T COG3638 231 PA 232 (258)
T ss_pred Ch
Confidence 84
No 87
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-47 Score=356.96 Aligned_cols=202 Identities=30% Similarity=0.451 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|+++.|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 478999999953 35999999999999 99999999999999999999999999999999999987766 677889999
Q ss_pred EccCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++|++.+|.. |++||+.+. .... ++++.++++..++.+..+. ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999876 999998642 1111 2345566777776654432 2367999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
+.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987667999999999999865 9999999999998765
No 88
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.9e-47 Score=358.43 Aligned_cols=205 Identities=25% Similarity=0.449 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
++++||+++|++.. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 159999999999999999999999999999999999999999999999999875 445678899
Q ss_pred eEEccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+|+||++.+|.. |++||+.+.. ... ++++.++++..++.+..+ ....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999985 9999996421 112 233455566665554433 345789999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
|++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998864 47899999999998765 9999999999998764
No 89
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-47 Score=363.08 Aligned_cols=207 Identities=29% Similarity=0.465 Sum_probs=174.7
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC---HHHHhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~---~~~~r~~ 309 (461)
++++|++++|+++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999642 45999999999999999999999999999999999999999999999999988776 4567888
Q ss_pred ceEEccCCcccc-ccHHhhcCCCCC------------CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChh
Q 012523 310 LSIIPQEPTLFR-GSVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (461)
Q Consensus 310 i~~v~Q~~~lf~-~ti~~Nl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG 373 (461)
++|+||++.+|. .|+++|+.+... .. ++++.++++..++. ........+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCCcccCCHH
Confidence 999999999886 599999964210 01 12233344444443 3334556789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
||||++||||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+. .||++++|++|++++.|.
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999864 3789999999999988 599999999999998876
Q ss_pred h
Q 012523 451 N 451 (461)
Q Consensus 451 ~ 451 (461)
.
T Consensus 229 ~ 229 (241)
T cd03256 229 P 229 (241)
T ss_pred H
Confidence 3
No 90
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=9.9e-47 Score=354.41 Aligned_cols=202 Identities=25% Similarity=0.396 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999953 3599999999999999999999999999999999999999999999999988654 456788999
Q ss_pred EccCCcccc-ccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
+||++.+|. .|++||+.+.. ..+++++.++++..++.+..+. ....||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998884 69999996431 2245566777788777665543 24679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 389 RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998864 47899999999998865 9999999999998765
No 91
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=379.29 Aligned_cols=205 Identities=23% Similarity=0.335 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999433 3599999999999999999999999999999999999999999999999999887764 47899
Q ss_pred EEccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||||++.+|+ .|++||+.+.. ..+. +++.++++..++.++.++.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999997532 1222 34567778888877766655 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
|+++|++|+||||||+||+.+++.+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~ 218 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECC
Confidence 9999999999999999999999999999988643 789999999998775 499999999999998876
No 92
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-47 Score=380.22 Aligned_cols=208 Identities=26% Similarity=0.404 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCC--CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---Hh
Q 012523 233 IELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (461)
Q Consensus 233 i~~~~v~~~y~~--~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~r 307 (461)
|+++|++++|+. ....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 2346999999999999999999999999999999999999999999999999998877554 47
Q ss_pred hcceEEccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 308 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
++|+||||++.+|. .|++||+.+.. ..++ +++.+.++..++.+.. .....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 88999999999886 59999997431 1222 2334445555544433 3344689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999998643 7899999999998876 999999999999998764
No 93
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-46 Score=357.37 Aligned_cols=203 Identities=27% Similarity=0.426 Sum_probs=170.7
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---Hh
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~r 307 (461)
++++||+++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 35999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -hcceEEccCCcccc-ccHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 308 -TKLSIIPQEPTLFR-GSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 308 -~~i~~v~Q~~~lf~-~ti~~Nl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
+.++|++|++.+|+ .|++||+.+. ..... +++.++++..++.+. .......||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 67999999999886 5999999642 11221 223444444444433 3344578999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEE
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFS 446 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~ 446 (461)
+||||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.++.||++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998864 378999999999999889999999999985
No 94
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.4e-46 Score=344.93 Aligned_cols=178 Identities=32% Similarity=0.587 Sum_probs=164.7
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999965433599999999999999999999999999999999999999999999999988765 5667889999
Q ss_pred EccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
++|++.+|+.|++||+ ..+|||||+||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999997 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEcc
Q 012523 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~ 449 (461)
|||||++||+.+.+.+.+.+++..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999876689999999999999889999999999998765
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.5e-46 Score=361.47 Aligned_cols=207 Identities=29% Similarity=0.441 Sum_probs=173.9
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH---HHHhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~---~~~r~~ 309 (461)
++++||+++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ..+|+.
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2459999999999999999999999999999999999999999999999999877654 346788
Q ss_pred ceEEccCCcccc-ccHHhhcCCCCC------------CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChh
Q 012523 310 LSIIPQEPTLFR-GSVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (461)
Q Consensus 310 i~~v~Q~~~lf~-~ti~~Nl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG 373 (461)
++|+||++.+|. .|+++|+.+... .. ++++.++++..++.+. ......+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHH
Confidence 999999999886 599999964211 01 1233444444444433 33455789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998864 37899999999998864 99999999999998876
Q ss_pred h
Q 012523 451 N 451 (461)
Q Consensus 451 ~ 451 (461)
.
T Consensus 230 ~ 230 (243)
T TIGR02315 230 P 230 (243)
T ss_pred H
Confidence 3
No 96
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.7e-47 Score=355.51 Aligned_cols=200 Identities=32% Similarity=0.471 Sum_probs=170.0
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
+++|++++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999964324599999999999999999999999999999999999999999999999999877777788899999
Q ss_pred ccCCc--cccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 314 PQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 314 ~Q~~~--lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
||++. ++..|+++|+.+.. ..+. +++.+.++..++.+.++ ....+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 99984 56789999996521 1221 23444555555544433 34468999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999988643 7899999999999887 99999999985
No 97
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-46 Score=368.17 Aligned_cols=208 Identities=27% Similarity=0.411 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999644446999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEccCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 312 IIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 312 ~v~Q~~--~lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|++|++ .++..|+.||+.+.. ..+. +++.++++..++.++++..| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 456779999997531 1222 34566777777776666554 579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
|++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999998653 789999999999988899999999999999886
No 98
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.2e-46 Score=360.50 Aligned_cols=209 Identities=25% Similarity=0.413 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~~i~ 311 (461)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999963 359999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEccCCccccc-cHHhhcCCCCC-C------------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM-Y------------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~-~------------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
|+||++.+|+. |++||+.+... . ..++. ...+.+.++.+ |++........+||||||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERV--GLADLADRPAGELSYGQQRR 151 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHc--CccchhhCChhhCCHHHHHH
Confidence 99999999886 99999964321 1 01111 11123344443 44545556678899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 999999999999999999999999999999999998864 57899999999999866 99999999999998886
No 99
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-47 Score=374.43 Aligned_cols=204 Identities=25% Similarity=0.380 Sum_probs=181.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++||+++|+ +..+++|+||+|++||+++++|||||||||+|++|+||..|++|+|.+||+++.+++++ ++.|+
T Consensus 5 ~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG 80 (352)
T ss_pred eEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence 599999999997 34599999999999999999999999999999999999999999999999999998875 67899
Q ss_pred EEccCCcccc-ccHHhhcCCCCC----CCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 312 IIPQEPTLFR-GSVRTNLDPLGM----YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 312 ~v~Q~~~lf~-~ti~~Nl~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+|+|+.-||+ .||+||+.|+-. ..+ +++.++++.+++.++-.+.| .+|||||+||+||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 9999999995 599999987522 222 36778999999999888877 568999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhh-hhcCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTI-TDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~d~i~vl~~G~i~~~~~ 450 (461)
||..+|++|+||||.|+||.+-+..++.-+++.. .+.|.|+|||+-+.. ..+|||.||++|+|...|.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gt 220 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCC
Confidence 9999999999999999999999888888887743 388999999998765 4599999999999987664
No 100
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=370.27 Aligned_cols=211 Identities=29% Similarity=0.457 Sum_probs=177.3
Q ss_pred EEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC--HHHHh
Q 012523 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLR 307 (461)
Q Consensus 233 i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~--~~~~r 307 (461)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996432 35999999999999999999999999999999999999999999999999997654 35678
Q ss_pred hcceEEccCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 308 TKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 308 ~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
+.+|||||+| .+|+.|++||+.+.. ..+++ ++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 577889999997532 12332 234445554442 01233455678999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccchh
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~~ 452 (461)
+|||||+.+|++|||||||++||+.+...+.+.+++..+ ++|+|++||+++.+. .||||++|++|++++.|..-
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999988643 789999999999875 59999999999999988643
No 101
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=361.45 Aligned_cols=211 Identities=19% Similarity=0.363 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC---CCceEEEECCEeCCCCCHHHHhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~---~~~G~i~i~g~~i~~~~~~~~r~ 308 (461)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 359999999999999999999999999999999999985 68999999999998887778888
Q ss_pred cceEEccCCccccccHHhhcCCCC---CC------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 309 KLSIIPQEPTLFRGSVRTNLDPLG---MY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~ti~~Nl~~~~---~~------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
.++|+||++.+|+.|++||+.+.. .. .++++.++++.+++.+++.. ...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 999999999999999999996531 11 11234555666666443322 234556789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||||++++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|.+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 225 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGES 225 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999987668999999999998764 999999999999988773
No 102
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.1e-46 Score=355.55 Aligned_cols=200 Identities=23% Similarity=0.389 Sum_probs=171.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH---HHhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~---~~r~~ 309 (461)
++++|+++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999876543 46788
Q ss_pred ceEEccCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~-~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
++|++|++.+|. .|++||+.+.. ... ++++.++++..++.+..+..| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 59999986421 111 234566677777665544433 57999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
||++++|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47899999999999886 99999999985
No 103
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-46 Score=358.90 Aligned_cols=208 Identities=29% Similarity=0.458 Sum_probs=177.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 35999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEccCCccccccHHhhcCCCCC---CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 312 IIPQEPTLFRGSVRTNLDPLGM---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
|+||++.+|+.|+++|+.+... ..++++.+.++..++.+ ........+||||||||++||||++++|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998999999975321 11234444555555421 1123345789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 389 RILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 216 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKT 216 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999999999999999998864 37899999999998875 999999999999987663
No 104
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-46 Score=358.84 Aligned_cols=204 Identities=25% Similarity=0.358 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999964 359999999999999999999999999999999999999999999999999876543 256799
Q ss_pred EEccCCcccc-ccHHhhcCCCCC---C----CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 312 IIPQEPTLFR-GSVRTNLDPLGM---Y----SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 312 ~v~Q~~~lf~-~ti~~Nl~~~~~---~----~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
|++|+|.+|. .|++||+.+... . .. +++.++++..++.+.. .....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999886 599999975321 1 11 2233445555544333 3345689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 99999999999999999999999999999999988643 7899999999998765 99999999999998876
No 105
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.7e-46 Score=354.07 Aligned_cols=202 Identities=24% Similarity=0.389 Sum_probs=171.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 478999999964 3599999999999999999999999999999999999999999999999998765542 467999
Q ss_pred EccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+||++.+|. .|++||+.+.. .... +++.++++..++.+..+. ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999885 59999996431 1222 233445566665544433 3467999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
+++|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999998776 9999999999999876
No 106
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.2e-46 Score=352.70 Aligned_cols=210 Identities=20% Similarity=0.361 Sum_probs=185.2
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH----HHHhhc
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTK 309 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~----~~~r~~ 309 (461)
.+.|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 567899999755 459999999999999999999999999999999999999999999999998876542 235678
Q ss_pred ceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
++|++|++.+|+.|++||+.+.....+++..++++..++.+.++.+|.|+++..+....+||||||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999997644445556677888889888899999999999998899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 390 ILILDEATASIDSATDAILQR--IIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
++||||||++||+.+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999888887 454443 3689999999999998899999999984
No 107
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-46 Score=358.08 Aligned_cols=208 Identities=26% Similarity=0.402 Sum_probs=175.9
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH---HHh
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 307 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~---~~r 307 (461)
|+++|++++|++.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996431 2599999999999999999999999999999999999999999999999998876543 347
Q ss_pred hcceEEccCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 308 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~-~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
+.++|+||++.+|. .|++||+.+.. ... .+++.++++..++.+..+ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 78999999999997 59999996421 112 223445555555544433 334689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||||++++|+++||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999998864 27899999999999865 999999999999998863
No 108
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.9e-46 Score=353.84 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH---HHHhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~---~~~r~~ 309 (461)
++++|++++|++. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 359999999999999999999999999999999999999999999999999877654 346788
Q ss_pred ceEEccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
++|++|++.+|.. |++||+.+.. ..+ ++++.++++..++.+..+.. ..+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHH
Confidence 9999999999875 9999996421 112 22345566666665544433 357999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
||++++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999876 999999999974
No 109
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=355.57 Aligned_cols=202 Identities=26% Similarity=0.331 Sum_probs=170.7
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
++++|+++.|++.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999996421 459999999999999999999999999999999999999999999999998763 35789
Q ss_pred eEEccCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~-~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+|+||++.+|. .|++||+.+.. ... ++++.++++..++.+..+.. ..+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 99999999887 59999996421 111 23445566666665544433 3679999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEe--CCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLS--YGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~--~G~i~~~~~ 450 (461)
|++++|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|+ +|++++.+.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 217 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE 217 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence 9999999999999999999999999999998863 37899999999997764 99999999 799998654
No 110
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=367.96 Aligned_cols=209 Identities=25% Similarity=0.379 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC----CCHHH
Q 012523 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~----~~~~~ 305 (461)
|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999863 33557
Q ss_pred HhhcceEEccCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 306 ~r~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
+|+.++||+|+| .+|..|+.+|+.+.. ..+.+ ++.++++.+++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 888999999998 688899999997532 12222 2344455555421 1123445789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|++|||||+.+|++|||||||++||+.+.+.+.+.++++. .++|+|++||+++.+. .||||++|++|+++++|..
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999998764 4789999999999885 5999999999999998873
No 111
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.7e-46 Score=359.72 Aligned_cols=210 Identities=25% Similarity=0.403 Sum_probs=177.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC-----ceEEEECCEeCCCC--CHHH
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~-----~G~i~i~g~~i~~~--~~~~ 305 (461)
++++||+++|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 34999999999999999999999999999999999999998 99999999998753 3456
Q ss_pred HhhcceEEccCCccccccHHhhcCCCC---C-CCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
+++.++|+||++.+|+.|++||+.+.. . .+. +++.++++..++.+.+. ........+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 788999999999999999999997421 1 121 23445556665542221 22334557899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999987666899999999998765 999999999999998874
No 112
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5.3e-46 Score=354.37 Aligned_cols=206 Identities=23% Similarity=0.331 Sum_probs=175.7
Q ss_pred cEEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---H
Q 012523 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~ 306 (461)
.|+++|++++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999996532 24999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhcceEEccCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 307 -RTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 307 -r~~i~~v~Q~~~lf~~-ti~~Nl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
++.++|++|++.+|.. |+.||+.+. .... .+++.++++..++.+..+..| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3579999999999875 999998642 1111 234556667777665554433 5799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CcEEEEEccCchhhhhcCEEEEEeCCEEEEc
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-P-GSTVITIAHRVPTITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~ 448 (461)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.++.||++++|++|+++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998863 2 7899999999999888999999999999864
No 113
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-46 Score=375.80 Aligned_cols=205 Identities=26% Similarity=0.382 Sum_probs=178.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++++
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999953 4589999999999999999999999999999999999999999999999999876653 57899
Q ss_pred EEccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||+|++.+|+. |++||+.+.. ..+ ++++.++++..++.++.++.| .+||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997531 122 234566777777766554444 6799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~ 221 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSP 221 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988643 7899999999998754 999999999999998874
No 114
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=4.4e-46 Score=353.40 Aligned_cols=210 Identities=26% Similarity=0.425 Sum_probs=172.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~~i~ 311 (461)
|+++||+++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 478999999963 359999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EEccCCccccc-cHHhhcCCCCC-CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
|+||++.+|.. |+++|+.+... ....+..+. +.+.++.++ +++........+||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999986 99999975321 111111111 111122211 12223345567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 390 ILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+|+|||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 215 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGT 215 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCC
Confidence 999999999999999999999998864 47899999999998765 99999999999998876
No 115
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-46 Score=359.98 Aligned_cols=209 Identities=25% Similarity=0.372 Sum_probs=175.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999642 459999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+||++.+|. .|++||+.+.. ..+. +++.++++..++.+ .....+...+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999986 59999996431 1121 12333334433321 0123455678999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 220 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTP 220 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999998643 7899999999997765 999999999999988763
No 116
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.6e-46 Score=339.91 Aligned_cols=172 Identities=35% Similarity=0.611 Sum_probs=161.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997544459999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
++|++.+|+.|++||+ |||||+||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEE
Q 012523 393 LDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSF 445 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i 445 (461)
|||||++||+.+.+.+.+.+++.. +++|+|++||+++.++.||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998864 37899999999999988999999999974
No 117
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-46 Score=359.30 Aligned_cols=211 Identities=22% Similarity=0.378 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~~~ 304 (461)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999963 359999999999999999999999999999999999975 689999999999864 3445
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+|+.++|++|++.+|+.|++||+.+.. .. . ++++.++++.+++.+.+. ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 234455566666543322 2234556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~ 232 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999987667899999999998865 999999999999988763
No 118
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.1e-46 Score=369.65 Aligned_cols=206 Identities=25% Similarity=0.394 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++|
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999987654 45788999
Q ss_pred EEccCCcccc-ccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~-~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
|+||++.+|. .|++||+.+.. ..+.. ++.++++..++.+ ..++. ..+||||||||++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~----~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAK----VGELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCc----hhhCCHHHHHHHHHHHH
Confidence 9999999986 59999997432 12222 2233344443332 22333 35799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+|++|+|||||++||+.+.+.+.+.|+++. +++|+|++||+++.++. ||+|++|++|++++.|..
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~ 222 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAP 222 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999864 47899999999999876 999999999999998863
No 119
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.5e-46 Score=351.95 Aligned_cols=197 Identities=29% Similarity=0.423 Sum_probs=166.1
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999963 35999999999999999999999999999999999999999999999998763 467789999
Q ss_pred ccCCcc---ccccHHhhcCCCCCC-----------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 314 PQEPTL---FRGSVRTNLDPLGMY-----------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 314 ~Q~~~l---f~~ti~~Nl~~~~~~-----------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
||++.+ |..|++||+.+.... .++++.++++..++.++.+. ...+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHH
Confidence 999976 557999999643210 12345566666666554443 34679999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999864 57899999999998865 9999999886 55554
No 120
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-46 Score=362.71 Aligned_cols=208 Identities=28% Similarity=0.425 Sum_probs=178.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|+++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999644446999999999999999999999999999999999999999999999999998777778889999
Q ss_pred EEccCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 312 IIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 312 ~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|+||++ .++..|++||+.+.. ..+.+ .+.++++..++.++.+. ...+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHHH
Confidence 999998 345679999997531 12222 23445566666554443 34689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
|++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||++++|++|++++.|.
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~ 225 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999998643 489999999999888899999999999998775
No 121
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-46 Score=348.69 Aligned_cols=200 Identities=28% Similarity=0.429 Sum_probs=172.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++ . . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~-~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGE-Q-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCC-E-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 478999999963 2 2 39999999999999999999999999999999999999999999999876654 3578999
Q ss_pred EccCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++|++.+|.+ |++||+.+... ..++++.++++..++.+..+..| .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999974321 12335667777777766655544 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999864 37899999999998866 9999999999998764
No 122
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-46 Score=366.25 Aligned_cols=212 Identities=23% Similarity=0.383 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC----CHHH
Q 012523 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~----~~~~ 305 (461)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 3599999999999999999999999999999999999999999999999998653 2356
Q ss_pred HhhcceEEccCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccc-cccCCCCCCChhHHHHHH
Q 012523 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 306 ~r~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t-~~~~~g~~lSgGq~Qrl~ 379 (461)
+|+.||||||+| .+|..|+.||+.+.. ..+.++..+. ..+.+..+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 578889999997532 1233222211 12333332 4542 334567889999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|||||+.+|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||||++|++|++++.|..
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999864 3789999999999875 5999999999999988863
No 123
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-46 Score=364.61 Aligned_cols=207 Identities=27% Similarity=0.452 Sum_probs=177.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC--CCCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~--~~~~~~~r~~ 309 (461)
-|+++|++++|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4899999999963 345999999999999999999999999999999999999999999999999984 3345678889
Q ss_pred ceEEccCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 012523 310 LSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (461)
Q Consensus 310 i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l 380 (461)
++|+||++ .+|+.|++||+.+.. ..+. +++.++++..++.++. .....+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHHH
Confidence 99999998 567889999997521 1222 2345556666665433 34457899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
||||+.+|++|||||||++||+.+...+.+.+++..+ ++|+|++||+++.+. .|||+++|++|++++.|.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999988643 789999999999987 599999999999999886
No 124
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-46 Score=359.43 Aligned_cols=212 Identities=25% Similarity=0.384 Sum_probs=179.2
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CC
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MG 302 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~ 302 (461)
.+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 446999999999963 359999999999999999999999999999999999986 589999999999853 34
Q ss_pred HHHHhhcceEEccCCccccccHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 303 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 303 ~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
...+|++++|++|++.+|+.|+++|+.+.. ..+. +++.++++.+++.+.+ .....+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 567788999999999999999999997531 1222 3345556665553222 223445667899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999987667899999999998865 99999999999999776
No 125
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.4e-46 Score=354.70 Aligned_cols=210 Identities=27% Similarity=0.423 Sum_probs=170.7
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH---HHHh
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLR 307 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~---~~~r 307 (461)
|+++||+++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996431 259999999999999999999999999999999999999999999999999987763 5678
Q ss_pred hcceEEccCCc--cc-cccHHhhcCCC----CCCCH-HHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhHHHHH
Q 012523 308 TKLSIIPQEPT--LF-RGSVRTNLDPL----GMYSD-NEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 308 ~~i~~v~Q~~~--lf-~~ti~~Nl~~~----~~~~~-~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq~Qrl 378 (461)
+.++|++|++. ++ ..|+++|+.+. ....+ +...++. .+.+..+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 46999998632 11111 1111110 1222322 232 234455678999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEcc
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~ 449 (461)
+||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988653 789999999999988 49999999999998765
No 126
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-46 Score=366.37 Aligned_cols=208 Identities=26% Similarity=0.382 Sum_probs=174.4
Q ss_pred EEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC----CCHHH
Q 012523 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~----~~~~~ 305 (461)
++++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 359999999999999999999999999999999999999999999999999863 33456
Q ss_pred HhhcceEEccCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 306 ~r~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.|+.++||||+| .+|+.|++||+.+.. ..+.+ .+.++++.+++.+ .........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 788899999998 578889999997531 12332 2334445554431 1123445789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||++||+++.+.. ||||++|++|+++++|.
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999988643 7899999999998864 99999999999998876
No 127
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.4e-46 Score=351.97 Aligned_cols=203 Identities=25% Similarity=0.368 Sum_probs=171.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---Hhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~r~~ 309 (461)
|+++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999988765443 6788
Q ss_pred ceEEccCCccc-cccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLF-RGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf-~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
++|+||++.+| ..|++||+.+.. ..+++ ++.++++..++.+..+ ....+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHHH
Confidence 99999999875 569999997521 12222 2344555555544433 33468999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
||++.+|++|||||||++||+.+.+.+.+.+++.. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 47899999999999876 89999999999864
No 128
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-46 Score=351.08 Aligned_cols=204 Identities=26% Similarity=0.392 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEE
Confidence 478999999963 359999999999999999999999999999999999999999999999998865 33567788999
Q ss_pred EccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+||++.+++. |+++|+.+.. ... ++++.++++..++.+..+.. ..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999996421 111 23455666676666544433 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 215 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999988643 6899999999998875 99999999999998765
No 129
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-46 Score=361.89 Aligned_cols=207 Identities=26% Similarity=0.435 Sum_probs=176.6
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC-HHHHhhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~-~~~~r~~i~ 311 (461)
++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999633 34999999999999999999999999999999999999999999999999997765 356788899
Q ss_pred EEccCCc--cccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 312 IIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 312 ~v~Q~~~--lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|+||+|. ++..|+++|+.+.. ..+. +++.++++..++.++.+ .....|||||+||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHHH
Confidence 9999985 56679999997532 1222 23445555555554433 344689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
|++.+|++|||||||++||+.+...+.+.++++. ++.|+|++||+++.++.||+|++|++|++++.|..
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999998864 47899999999999988999999999999988863
No 130
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-46 Score=363.40 Aligned_cols=210 Identities=24% Similarity=0.399 Sum_probs=181.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCc---eEEEECCEeCCCCCHHHHhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~---G~i~i~g~~i~~~~~~~~r~ 308 (461)
.|+++|++|+|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 599999999996543459999999999999999999999999999999999999988 89999999998777777888
Q ss_pred cceEEccCCc--cccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 309 KLSIIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 309 ~i~~v~Q~~~--lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
+++|+||++. ++..|++||+.+.. ..+. +++.++++.+++.++.+..| .+|||||+||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHH
Confidence 9999999984 56789999997531 1223 23556677777766555444 689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||++++|++|++++.|..-
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988643 78999999999999889999999999999988743
No 131
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-46 Score=367.06 Aligned_cols=208 Identities=21% Similarity=0.287 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC---------
Q 012523 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--------- 300 (461)
Q Consensus 233 i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~--------- 300 (461)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999996432 259999999999999999999999999999999999999999999999887532
Q ss_pred ---------------CCHHHHhhcceEEccCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHH-HHHHhC
Q 012523 301 ---------------MGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISRL 355 (461)
Q Consensus 301 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~-~~i~~l 355 (461)
.+...+++.+|||||+| .+|..|++||+.+.. ..+. +++.++++.+++. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--- 159 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL--- 159 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh---
Confidence 13456788999999986 578889999997542 1232 2344555555553 232
Q ss_pred CCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-h
Q 012523 356 PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-D 433 (461)
Q Consensus 356 ~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~ 433 (461)
.....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .
T Consensus 160 --------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 160 --------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred --------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 34457899999999999999999999999999999999999999999998864 4789999999999765 5
Q ss_pred cCEEEEEeCCEEEEccch
Q 012523 434 SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 434 ~d~i~vl~~G~i~~~~~~ 451 (461)
||||++|++|+++++|..
T Consensus 232 adrv~vl~~G~i~~~g~~ 249 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDT 249 (305)
T ss_pred CCEEEEEECCEEEEECCH
Confidence 999999999999998863
No 132
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.3e-46 Score=374.28 Aligned_cols=205 Identities=24% Similarity=0.326 Sum_probs=176.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999963 3489999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEccCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~-~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||+|++.+|+ .|++||+.+.. ..+ ++++.++++..++.++.+ ....+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999996 59999997531 122 233455555555554444 4446899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~ 219 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTP 219 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988643 7899999999998755 999999999999998874
No 133
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=356.43 Aligned_cols=211 Identities=23% Similarity=0.362 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~--~~~~ 304 (461)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999963 3599999999999999999999999999999999999997 48999999998853 2345
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCCC----CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+|+.++|++|++.+|..|++||+.+... .. ++.+.++++.+++.+.+ ++.+ .....+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKL----NTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHH----hCCcccCCHHHHH
Confidence 67889999999999998999999975321 11 22345555555553222 1222 3356789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|.+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 233 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESST 233 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998667899999999998765 999999999999998874
No 134
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1e-45 Score=376.87 Aligned_cols=207 Identities=28% Similarity=0.444 Sum_probs=182.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++..++++++|
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999963 45999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEccCCcc-ccccHHhhcCCCCC-----C---C---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 312 IIPQEPTL-FRGSVRTNLDPLGM-----Y---S---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 312 ~v~Q~~~l-f~~ti~~Nl~~~~~-----~---~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
||+|++.+ |+.|++||+.+... . . ++.+.++++.+++.++.++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999987 56799999965321 1 1 2346677777777655443 34679999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||||+++|++|||||||++||+.+...+++.|+++. +++|+|++||+++.+.. |||+++|++|++++.|..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~ 223 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPP 223 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999864 47899999999999854 999999999999998873
No 135
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=356.22 Aligned_cols=201 Identities=26% Similarity=0.371 Sum_probs=173.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 4999999999963 35999999999999999999999999999999999999999999999998753 4577899
Q ss_pred EEccCCcccc-ccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 312 IIPQEPTLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 312 ~v~Q~~~lf~-~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
|++|++.+|+ .|++||+.+.. ...++++.++++..++.+..+ ....+||||||||++||||++++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999987 59999997532 112445566677766655433 3447899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 390 ILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|+++++|.
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 999999999999999999999998853 37899999999998765 99999999999998765
No 136
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9.4e-46 Score=353.52 Aligned_cols=210 Identities=28% Similarity=0.439 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~~i~ 311 (461)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999887765553 56799
Q ss_pred EEccCCccccc-cHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|+||++.+|+. |++||+.+.. ....++..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999986 9999997421 111111111 122333332 344444555678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCH
Confidence 99999999999999999999999998864 47899999999987665 999999999999988763
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=361.27 Aligned_cols=207 Identities=23% Similarity=0.372 Sum_probs=178.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++.. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 378999999996433 4999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEccCCc--cccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 312 IIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 312 ~v~Q~~~--lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|++|++. +|..|+++|+.+.. ..+. +++.++++..++.+..... ...||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999984 67789999996421 1222 2345666676766555443 3679999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|++||+++.+. .|||+++|++|++++.|.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECC
Confidence 99999999999999999999999999999988643 789999999999985 599999999999999887
No 138
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.4e-46 Score=349.25 Aligned_cols=200 Identities=29% Similarity=0.453 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC--CCHHHHhhcc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~--~~~~~~r~~i 310 (461)
++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999964 359999999999999999999999999999999999999999999999998853 3445678899
Q ss_pred eEEccCCcccc-ccHHhhcCCCC----CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEPTLFR-GSVRTNLDPLG----MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~~lf~-~ti~~Nl~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
+|+||++.+|. .|++||+.+.. ....+ ++.++++..++.+.+ .....+|||||+||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHHHHHHHHH
Confidence 99999999886 59999996531 12222 233444444444333 344478999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 37899999999999865 999999999974
No 139
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.4e-45 Score=353.43 Aligned_cols=209 Identities=30% Similarity=0.411 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 689999999963 3599999999999999999999999999999999999999999999999998776654 3458999
Q ss_pred EccCCccc-cccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 313 IPQEPTLF-RGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 313 v~Q~~~lf-~~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
+||++.++ ..|+++|+.+.. ....++..+ .+.++++.+ |++........+|||||+||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999875 569999996432 122211111 122233332 3444445566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 389 RILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||++++|++|++++.|..
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~ 216 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAA 216 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCH
Confidence 9999999999999999999999998864 37899999999999888999999999999988763
No 140
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=344.76 Aligned_cols=426 Identities=20% Similarity=0.230 Sum_probs=301.1
Q ss_pred cccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 4 FDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRM 83 (461)
Q Consensus 4 f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+++.+++.++.++++|+..+...+ ..++.+.++.+.++++.+.++++|+++.+++...+++.++.....+.+..+.+..
T Consensus 99 ier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~a 177 (546)
T COG4615 99 IERLGSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAA 177 (546)
T ss_pred HHHhcccchhhhhcccccceeehH-hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999998444 4466688888888889999999999998777666666665555444444455555
Q ss_pred hhhccccHHHHHHHHHchHHHHHHcccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 84 NGTTKAPIVNFAAETSQGVVSIRAFKMMDM--FFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 84 ~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
..+...++.+..+..+.|.++++...--.+ +.+.+...-+...+ +..........-..+...+...++++. +.
T Consensus 178 are~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~---~~~~~n~f~~la~~~~ni~l~~lIGlvf~la 254 (546)
T COG4615 178 ARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH---HIIRANTFHLLAVNWSNIMLLGLIGLVFWLA 254 (546)
T ss_pred HHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777889999999999999998754332 22222221111111 111111110001111111111112111 11
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...+..+......++.....+..|+..+......+..+.++.+|+.++-..|..... ... ...|.-..|+++||.
T Consensus 255 l~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~--~~~---q~~p~~~~lelrnvr 329 (546)
T COG4615 255 LSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF--PRP---QAFPDWKTLELRNVR 329 (546)
T ss_pred HhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC--CCC---CcCCcccceeeeeee
Confidence 122333333223333444456677777777777888999999999987653322111 111 111223469999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|.|+++. .-+..||++|++||.|-|+|.|||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+.|.++
T Consensus 330 fay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhL 408 (546)
T COG4615 330 FAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHL 408 (546)
T ss_pred eccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhh
Confidence 9997654 468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 012523 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (461)
Q Consensus 320 f~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~ 399 (461)
|+.++- .-..++.+.+.+-++...+.+... +.+|--+ ...||-|||+|+|+--|++.+.||+++||=-+-
T Consensus 409 F~~ll~----~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAAD 478 (546)
T COG4615 409 FDQLLG----PEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAAD 478 (546)
T ss_pred hHhhhC----CccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhcc
Confidence 987652 112256666666666655544322 2222111 257899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH--cCCcEEEEEccCchhhhhcCEEEEEeCCEEEEcc
Q 012523 400 IDSATDAILQRIIREE--FPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~ 449 (461)
-||.-++.+.+.+... ..||||+.||||-.....+||++.|++|+++|..
T Consensus 479 QDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 479 QDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred CChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999888776553 3499999999999999999999999999999844
No 141
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=359.16 Aligned_cols=207 Identities=27% Similarity=0.391 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccCCccccc-cHHhhcCCCCC--------C---CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
|++|++.++.. |+.+|+.+... . .++++.++++.+++.+.++..| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877655 99999974210 0 1234566677777765544433 579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~ 232 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTP 232 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 9999999999999999999999999999999998864 27899999999998864 999999999999988764
No 142
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=357.02 Aligned_cols=205 Identities=26% Similarity=0.425 Sum_probs=177.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999963 359999999999999999999999999999999999999999999999999888777778888999
Q ss_pred EccCCccccc-cHHhhcCCCC-C-------CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG-M-------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~-~-------~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l 380 (461)
+||++.++.+ |+.||+.+.. . .. ++++.++++..++.+..+ .....|||||+||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHHH
Confidence 9999998876 9999997531 0 01 223455566666654433 3346899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence 999999999999999999999999999999998864 47899999999998765 99999999999998765
No 143
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.7e-45 Score=354.07 Aligned_cols=214 Identities=22% Similarity=0.347 Sum_probs=175.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~~i~ 311 (461)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 359999999999999999999999999999999999999999999999999887766543 45799
Q ss_pred EEccCCccccc-cHHhhcCCCCCCCHH---H---HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGMYSDN---E---IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~~~~~---~---~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
|++|++.+|++ |++||+.+....... . .........+.+.++.+ |++........+|||||+||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999986 999999653110000 0 00000011122333332 344444556678999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+.+|++|+|||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCC
Confidence 9999999999999999999999999999987667899999999999875 99999999999998886
No 144
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-46 Score=348.65 Aligned_cols=200 Identities=27% Similarity=0.437 Sum_probs=168.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999953 359999999999999999999999999999999999999999999999987753 45778999
Q ss_pred EccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++|++.+|.. |++||+.+.. ... ++++.++++..++.+ .......+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHHH
Confidence 9999999875 9999986421 111 123334444444433 33344578999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
+.+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 47899999999998865 9999999999998764
No 145
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=359.74 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 49999999999754345999999999999999999999999999999999999999999999999998888778889999
Q ss_pred EEccCCc-cc-cccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 312 IIPQEPT-LF-RGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 312 ~v~Q~~~-lf-~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|++|+|. +| ..|+++|+.+.. .... +++.++++..++.++. .....+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9999985 44 558999986531 1122 2344455555554433 2345789999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
|++.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+..||||++|++|++++.|..
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~ 226 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTP 226 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999988643 7899999999998888999999999999988874
No 146
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=371.18 Aligned_cols=205 Identities=27% Similarity=0.365 Sum_probs=176.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++ .++.++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 359999999999999999999999999999999999999999999999999987654 356899
Q ss_pred EEccCCccccc-cHHhhcCCCCC-------CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM-------YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~-------~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
||+|++.+|+. |++||+.+... .+ ++++.++++..++.++.++. ..+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 99999999975 99999975321 12 12445566666665544443 4679999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||||+++|++|+|||||++||+.+++.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999988643 6899999999998765 999999999999998863
No 147
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=358.28 Aligned_cols=213 Identities=22% Similarity=0.376 Sum_probs=179.8
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCC--CC
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MG 302 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~--~~ 302 (461)
.+.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 346999999999963 3599999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHHhhcceEEccCCccccccHHhhcCCCC---CC--C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChh
Q 012523 303 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (461)
Q Consensus 303 ~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~--~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG 373 (461)
...+|+.++|++|++.+|+.|+.||+.+.. .. + ++++.++++.+++.+.+. ........+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 556788999999999999889999997421 11 1 223455666666543221 1234556789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987667899999999999865 899999999999998864
No 148
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-45 Score=352.94 Aligned_cols=206 Identities=21% Similarity=0.351 Sum_probs=173.6
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC--HHHHhhcc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~--~~~~r~~i 310 (461)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 35999999999999999999999999999999999999999999999999987643 35677889
Q ss_pred eEEccCCcccc-ccHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~~lf~-~ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
+|+||++.+|. .|+++|+.+.. ..+. +++.++++..++. .........||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHHHHHHHHH
Confidence 99999999886 59999996421 1122 1233344444443 333444578999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||++++|++++|||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence 99999999999999999999999999999998864 47899999999999865 999999999999988763
No 149
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-45 Score=356.97 Aligned_cols=211 Identities=22% Similarity=0.413 Sum_probs=176.9
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CCH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~~ 303 (461)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 46999999999963 359999999999999999999999999999999999987 689999999999863 456
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCCC---CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
.++|+.++|+||++.+|..|++||+.+... .. ++++.++++.+++.. +++........+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence 678889999999999998899999975321 11 223344455544422 22233445567899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeC-----------CEE
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSY-----------GSF 445 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~-----------G~i 445 (461)
++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 99999999999999999999999999999999999987667899999999998865 999999996 678
Q ss_pred EEccc
Q 012523 446 SFNNV 450 (461)
Q Consensus 446 ~~~~~ 450 (461)
++.|.
T Consensus 243 ~~~~~ 247 (269)
T PRK14259 243 VEFNE 247 (269)
T ss_pred EEeCC
Confidence 88776
No 150
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-45 Score=355.31 Aligned_cols=211 Identities=28% Similarity=0.396 Sum_probs=178.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCCCHHHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLKDL 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~~~~~~ 306 (461)
.++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999984 69999999999988777788
Q ss_pred hhcceEEccCCccc-cccHHhhcCCCC---C--CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 307 RTKLSIIPQEPTLF-RGSVRTNLDPLG---M--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 307 r~~i~~v~Q~~~lf-~~ti~~Nl~~~~---~--~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
|+.++|+||++.+| ..|++||+.+.. . .. ++++.++++..++.+.+. ........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence 89999999999765 569999996421 1 11 123455566655533221 1233445789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|++|+|||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|..
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCH
Confidence 99999999999999999999999999999999999998766899999999999886 5999999999999988763
No 151
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-44 Score=354.07 Aligned_cols=205 Identities=23% Similarity=0.376 Sum_probs=183.1
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
.+.|+++|+++. + +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 456999999985 2 3499999999999999999999999999999999999999999999998 3
Q ss_pred ceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
++|++|++.+|+.|+++|+.+.....+.+..++++.+++.+.+..+|.++++.+++.+.+||||||||++||||++++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997643333445566777788889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 390 ILILDEATASIDSATDAILQRII-REEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
+|||||||++||+.+...+.+.+ +....++|+|++||+++.+..||++++|++|++++.|.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999998888754 455557899999999999988999999999999998874
No 152
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.3e-45 Score=372.51 Aligned_cols=206 Identities=23% Similarity=0.361 Sum_probs=177.3
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCc--eEEEECCEeCCCCCHHHHh
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN--GRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~--G~i~i~g~~i~~~~~~~~r 307 (461)
.++++++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 357999999999963 359999999999999999999999999999999999999999 999999999987665 35
Q ss_pred hcceEEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 308 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
+.|+||+|++.+|+. |++||+.+.. ..++ +++.++++..++.++.++.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 689999999999965 9999997531 1222 23455666666655554444 679999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP---GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||||+.+|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999987543 6899999999998765 99999999999998886
No 153
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-46 Score=352.16 Aligned_cols=205 Identities=28% Similarity=0.397 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCE---eCCCCCHHHHhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMGLKDLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~---~i~~~~~~~~r~ 308 (461)
+|.++|+++.|+. ..+++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++... -.+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RDR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hhc
Confidence 4788999999964 34899999999999999999999999999999999999999999999999 5555333 346
Q ss_pred cceEEccCCccc-cccHHhhcCCCCC-----CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 309 KLSIIPQEPTLF-RGSVRTNLDPLGM-----YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 309 ~i~~v~Q~~~lf-~~ti~~Nl~~~~~-----~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
+||+|+|+.-+| +.||.+||.|+-. .+ +.++.+.++.+++..+-++.| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 799999999998 5699999987531 22 345666788888887777777 57899999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
||||||..+|++|+||||+++||+.-.+.+.+.|++... +.|+++|||+.+.+. .||||++|++|+|...|+.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCH
Confidence 999999999999999999999999999999998887543 789999999998765 5999999999999887763
No 154
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.3e-46 Score=373.59 Aligned_cols=193 Identities=24% Similarity=0.349 Sum_probs=169.2
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH----hhcceEEccCCccccc
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG 322 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~ 322 (461)
+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..++ |++++||+|++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 348999999999999999999999999999999999999999999999999999888877 7889999999999975
Q ss_pred -cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEe
Q 012523 323 -SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394 (461)
Q Consensus 323 -ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLD 394 (461)
|++||+.+.. ..+ ++++.++++.+++.++.++.| .+||||||||++|||||+++|++||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999997532 122 234566677777766555444 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 395 EATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 395 Epts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+. .||+|++|++|++++.|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~ 213 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCC
Confidence 9999999999999999998763 3799999999999764 599999999999998875
No 155
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=356.22 Aligned_cols=211 Identities=26% Similarity=0.365 Sum_probs=177.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCC--CCCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC--SMGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~--~~~~~ 304 (461)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999986 44556
Q ss_pred HHhhcceEEccCCccccc-cHHhhcCCCC---CC--CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MY--SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~--~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
.+|+.++|+||++.+|+. |+.||+.+.. .. .. +++.++++..++.+.+ .........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence 778899999999999975 9999996421 11 11 2344455555543222 122345567899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999987667999999999998765 999999999999998773
No 156
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=359.17 Aligned_cols=209 Identities=25% Similarity=0.374 Sum_probs=180.5
Q ss_pred cEEEEeEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
.++++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999877777888999
Q ss_pred eEEccCCc--cccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEPT--LFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~~--lf~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
+|++|++. ++..|+.+|+.+.. ...++ ++.++++.+++.++.+. ....|||||+||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 56789999997431 12332 34556666676655443 3467999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
||++++|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+..||+|++|++|++++.|..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAP 224 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999988643 7899999999999988999999999999998874
No 157
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=373.35 Aligned_cols=205 Identities=23% Similarity=0.311 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++. ++.++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876653 56799
Q ss_pred EEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||+|++.+|+. |++||+.+.. ..+. +++.++++..++.++.++. ..+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999965 9999997531 1222 3455566666665544443 36799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+|++|||||||++||+.+++.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~ 218 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988643 7899999999998765 999999999999988763
No 158
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-45 Score=363.40 Aligned_cols=206 Identities=28% Similarity=0.474 Sum_probs=180.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|+. ...+|+|+||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999963 24599999999999999999999999999999999999999999999999998764 677899999
Q ss_pred EEccCCccccc-cHHhhcCCCC---C----CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---M----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~----~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
|+||+|.+++. |++||+.+.. . ..++++.+.++..++.+.. ......||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998865 9999997532 1 1234677777877776522 23356799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP-G-STVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|+.+|++|||||||+||||.+...+.+.|+++.+ + +||+++||.++.++. ||+|++|++|+++..|.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~ 220 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGT 220 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999755 4 799999999999988 99999999999999874
No 159
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.1e-45 Score=371.22 Aligned_cols=205 Identities=23% Similarity=0.368 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++.++
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999963 3489999999999999999999999999999999999999999999999999877654 46899
Q ss_pred EEccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||+|++.+|+. |++||+.+.. ..+ ++++.++++..++.++.++.| .+||||||||++||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997532 122 234566777777777766655 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|+++|++|+||||||+||+.++..+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|+|++.|..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~ 229 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988643 789999999999865 4999999999999998874
No 160
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-45 Score=352.49 Aligned_cols=207 Identities=25% Similarity=0.354 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC------CCCHHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC------SMGLKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~------~~~~~~ 305 (461)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ......
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999963 35999999999999999999999999999999999999999999999999873 123356
Q ss_pred HhhcceEEccCCccccc-cHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 306 LRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
+|+.++|+||++.+|.. |++||+.... .... +++.+.++..++.+ .......+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHH
Confidence 78899999999999875 9999996311 1122 12333444444433 334445789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|+++||||||++||+++...+.+.+++.. .++|+|++||+++.+.. ||++++|++|+++++|..
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999998865 37999999999999865 999999999999998774
No 161
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3e-45 Score=354.48 Aligned_cols=207 Identities=23% Similarity=0.366 Sum_probs=174.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC----------
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---------- 302 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~---------- 302 (461)
|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999963 35999999999999999999999999999999999999999999999999987543
Q ss_pred ---HHHHhhcceEEccCCcccc-ccHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCC
Q 012523 303 ---LKDLRTKLSIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 370 (461)
Q Consensus 303 ---~~~~r~~i~~v~Q~~~lf~-~ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~l 370 (461)
...+|+.++|++|++.+|. .|+.+|+.+.. .... +++.++++..++.+.. .....+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhhc
Confidence 2356788999999999885 69999997421 1121 2334455555554433 3445789
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEE
Q 012523 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSF 447 (461)
Q Consensus 371 SgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~ 447 (461)
||||+||++||||++++|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988643 789999999999886 499999999999999
Q ss_pred ccchh
Q 012523 448 NNVNF 452 (461)
Q Consensus 448 ~~~~~ 452 (461)
.|..-
T Consensus 228 ~g~~~ 232 (252)
T TIGR03005 228 QGKPD 232 (252)
T ss_pred eCCHH
Confidence 88743
No 162
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.2e-45 Score=363.99 Aligned_cols=206 Identities=22% Similarity=0.366 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.+|
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 3789999999953 459999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
|+||++.+|+. |+.||+.+.. .... +++.++++..++. .........||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999876 9999996421 1121 2333444444443 33445567899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++++|++|+|||||++||+.+.+.+.+.+++..+++|+|++||+++.++. ||||++|++|++++.|..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~ 216 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKL 216 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999998778999999999998876 999999999999998873
No 163
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.8e-45 Score=366.74 Aligned_cols=209 Identities=28% Similarity=0.409 Sum_probs=175.4
Q ss_pred cEEEEeEEEEeCCC-----------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC
Q 012523 232 RIELEDLKVRYRPN-----------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (461)
Q Consensus 232 ~i~~~~v~~~y~~~-----------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~ 300 (461)
-++++|+++.|+.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 49999999999631 2358999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhhcceEEccCC--ccc-cccHHhhcCCC----C-CCCHHH----HHHHHHHccHH-HHHHhCCCccccccc
Q 012523 301 MGLKD---LRTKLSIIPQEP--TLF-RGSVRTNLDPL----G-MYSDNE----IWEAMEKCQLK-ATISRLPMLLDSSVS 364 (461)
Q Consensus 301 ~~~~~---~r~~i~~v~Q~~--~lf-~~ti~~Nl~~~----~-~~~~~~----~~~~~~~~~l~-~~i~~l~~gl~t~~~ 364 (461)
++..+ +|++++||+|+| .++ ..|+.+|+... . ..+.++ +.++++.+++. +.. .
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~-----------~ 156 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI-----------N 156 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh-----------c
Confidence 87543 577899999998 466 46999998531 1 233322 33455555552 222 3
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEe
Q 012523 365 DEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLS 441 (461)
Q Consensus 365 ~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~ 441 (461)
....+|||||+||++|||||+.+|++||+||||++||+.++..+.+.|++..+ +.|+|+|||+++.+.. ||||++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34468999999999999999999999999999999999999999999988643 7899999999999976 99999999
Q ss_pred CCEEEEccch
Q 012523 442 YGSFSFNNVN 451 (461)
Q Consensus 442 ~G~i~~~~~~ 451 (461)
+|+|++.|..
T Consensus 237 ~G~ive~g~~ 246 (331)
T PRK15079 237 LGHAVELGTY 246 (331)
T ss_pred CCEEEEEcCH
Confidence 9999998874
No 164
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-45 Score=349.49 Aligned_cols=208 Identities=26% Similarity=0.408 Sum_probs=173.4
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH-Hhhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~-~r~~i~ 311 (461)
|+++||++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999963 35999999999999999999999999999999999999999999999999998776654 467899
Q ss_pred EEccCCccccc-cHHhhcCCCC-CC--CHH-HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG-MY--SDN-EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~-~~--~~~-~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
|+||++.+|.. |+++|+.+.. .. ..+ ...++++..+ ++.........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 9999996431 11 111 1222333222 12223344567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
+|+++||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+++++++|++++.|..-
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~ 217 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGD 217 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999988653 7899999999999885 9999999999999988743
No 165
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.6e-45 Score=363.97 Aligned_cols=206 Identities=25% Similarity=0.374 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+.++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999998653 356788999
Q ss_pred EEccCCcccc-ccHHhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFR-GSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~-~ti~~Nl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
|+||++.+|. .|++||+.+.. ..+..+ +.++++..++.+. ......+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHHHHHH
Confidence 9999999885 59999996321 122222 2233444443322 233346799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 219 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRP 219 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999998864 47899999999999875 999999999999988864
No 166
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-45 Score=358.70 Aligned_cols=209 Identities=25% Similarity=0.398 Sum_probs=180.0
Q ss_pred cEEEEeEEEEeCCC----CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC-HHHH
Q 012523 232 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDL 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~----~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~-~~~~ 306 (461)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 245999999999999999999999999999999999999999999999999987643 3567
Q ss_pred hhcceEEccCCc--cccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 307 RTKLSIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 307 r~~i~~v~Q~~~--lf~~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
++.++|+||+|. +|..|+.+|+.+.. ..+ ++++.++++.+++.++.++.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 66668999997532 112 234566777777776655544 6799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
++||||++++|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|..
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999864 37899999999999888999999999999998874
No 167
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=360.16 Aligned_cols=204 Identities=26% Similarity=0.369 Sum_probs=173.7
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH----hhc
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTK 309 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~----r~~ 309 (461)
.++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56788888853 358999999999999999999999999999999999999999999999999887765443 457
Q ss_pred ceEEccCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~-~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
++|+||++.+|. .|++||+.+.. ... ++++.++++..++.++++..| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 59999996421 111 234556677777766555544 57999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||++++|++|||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~ 244 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGT 244 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999998864 37899999999998765 99999999999998876
No 168
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-45 Score=352.79 Aligned_cols=205 Identities=25% Similarity=0.392 Sum_probs=176.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EccCCcc-ccccHHhhcCCCCC---C----CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTL-FRGSVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~l-f~~ti~~Nl~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++|++.+ +..|++||+.+... . .++++.++++..++.+..+ ....+||||||||++||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 9999987 56799999965321 1 1223455566666654333 33478999999999999999
Q ss_pred h------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 385 L------KRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 385 ~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
+ .+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+. .||+|++|++|++++.|.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCC
Confidence 9 5999999999999999999999999998864 4789999999999887 599999999999998776
No 169
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-45 Score=356.10 Aligned_cols=207 Identities=23% Similarity=0.349 Sum_probs=178.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999963 3599999999999999999999999999999999999999999999999999888877888899
Q ss_pred eEEccCCcccc-ccHHhhcCCCC--C------CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 311 SIIPQEPTLFR-GSVRTNLDPLG--M------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 311 ~~v~Q~~~lf~-~ti~~Nl~~~~--~------~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
+|+||++.+|. .|+++|+.+.. . .. ++++.++++..++.+..+ ....+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHHH
Confidence 99999998875 59999996431 1 11 223455666666655433 34578999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 227 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGA 227 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999988643 7899999999997765 99999999999998876
No 170
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3e-45 Score=357.74 Aligned_cols=206 Identities=21% Similarity=0.345 Sum_probs=173.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH---HHhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~---~~r~ 308 (461)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4999999999953 3599999999999999999999999999999999999999999999999998776543 3567
Q ss_pred cceEEccCCccccc-cHHhhcCCC-C---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPL-G---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~-~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
.++|+||++.+|+. |+.||+.+. . ..+. +++.+.++..++.+. ......+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHH
Confidence 89999999999976 999999642 1 1122 123334454444333 23344689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999988643 6899999999998876 99999999999998876
No 171
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-45 Score=359.99 Aligned_cols=208 Identities=26% Similarity=0.400 Sum_probs=173.4
Q ss_pred EEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC----CHHH
Q 012523 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~----~~~~ 305 (461)
++++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996432 3599999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhhcceEEccCC--ccccccHHhhcCCCC---CCCHHHH----HHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNEI----WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 306 ~r~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
+|+.|+|+||++ .+|+.|+++|+.+.. ..+.++. .++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 788899999998 578889999997421 1222222 22333333321 1234556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|++||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999998864 37899999999998865 99999999999998776
No 172
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-45 Score=359.91 Aligned_cols=210 Identities=30% Similarity=0.452 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC----CHH
Q 012523 232 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~----~~~ 304 (461)
.|+++|++++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996421 3599999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhhcceEEccCC--ccccccHHhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 305 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 305 ~~r~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
..++.++|+||+| .+|..|++||+.+.. ....++ +.++++.+++.. ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6678899999998 577789999996421 122222 233344444321 123445678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||++||||++.+|++|||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998864 47899999999998865 999999999999988863
No 173
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.8e-45 Score=367.71 Aligned_cols=206 Identities=25% Similarity=0.392 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...++.+|
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EEccCCcccc-ccHHhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFR-GSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~-~ti~~Nl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
|+||++.+|. .|++||+.+.. ..+..+ +.++++..++ ++..+ ....+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~----~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKAD----ARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhC----CChhhCCHHHHHHHHHHHH
Confidence 9999999874 59999997422 122222 2233333333 22233 3346799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.++. ||+|++|++|++++.|..
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~ 256 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRP 256 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999864 47999999999999876 999999999999988863
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-45 Score=352.63 Aligned_cols=211 Identities=24% Similarity=0.398 Sum_probs=176.4
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCC--CCH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~--~~~ 303 (461)
+.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 35899999999963 3599999999999999999999999999999999999863 69999999999864 345
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
..+|+.++|++|++.+|+.|+++|+.+.. .. + ++++.++++.+++.+.+ .........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHHH
Confidence 56788999999999999899999997531 11 1 22334445555443222 1223455678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999987667899999999998765 99999999999998876
No 175
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-45 Score=354.02 Aligned_cols=211 Identities=20% Similarity=0.351 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC--C---CceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~--~---~~G~i~i~g~~i~~--~~~~ 304 (461)
.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4999999999963 359999999999999999999999999999999999997 3 59999999999863 3445
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCCC----CCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~----~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+|+.++|+||++.+|+.|++||+.+... .+++ ++.++++..++.+.+. ........+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHH
Confidence 67889999999999998899999965321 1222 2333444555433221 2234566789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|++|+|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 238 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT 238 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999997667899999999998765 999999999999998874
No 176
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-45 Score=348.34 Aligned_cols=211 Identities=23% Similarity=0.386 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH-Hhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~-~r~~i 310 (461)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998877654 57789
Q ss_pred eEEccCCccccc-cHHhhcCCCCC-CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
+|++|++.+|+. |+++|+.+... ...++..+.+ .+.+..++ ++.........+||||||||++||||++.+|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999975 99999975321 1222211111 11111111 0111122345689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 389 RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|.
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCC
Confidence 9999999999999999999999998864 4799999999998765 599999999999999886
No 177
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-45 Score=354.93 Aligned_cols=212 Identities=23% Similarity=0.383 Sum_probs=179.1
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CCH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~~ 303 (461)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 459999999999999999999999999999999999997 589999999999864 335
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
..+|+.++|+||++.+|..|++||+.+.. .. .+ +++.++++..++.+.+ +...+....+|||||+
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHH
Confidence 56788999999999999899999997531 11 11 2344455555553322 2334566789999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
||++||||++++|++|||||||++||+.+.+.+.+.|++..++.|+|++||+++.+. .||++++|++|++++.|..
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998866789999999999875 5999999999999998874
No 178
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.4e-45 Score=343.90 Aligned_cols=201 Identities=23% Similarity=0.420 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++||++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999952 468999999999999999999999999999999999999999999999987543 35778999
Q ss_pred EccCCccccc-cHHhhcCCC-C-CC-----CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPL-G-MY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~-~-~~-----~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+||++.+|.. |+.||+.+. . .. .++++.++++..++.+..+..| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 999998642 1 11 2335666777777776665554 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+++|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|-
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999864 27899999999998765 99999999999998764
No 179
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.1e-45 Score=355.35 Aligned_cols=209 Identities=24% Similarity=0.418 Sum_probs=173.0
Q ss_pred EEEEeEEEEeCCC-------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH
Q 012523 233 IELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~-------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~ 305 (461)
|+++||++.|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 346999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhhcceEEccCCc--cc-cccHHhhcCCC----CCCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCC
Q 012523 306 ---LRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (461)
Q Consensus 306 ---~r~~i~~v~Q~~~--lf-~~ti~~Nl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lS 371 (461)
+|+.++|+||++. ++ ..|++||+.+. .... ++++.++++..++.+ ........+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 5778999999983 44 36999998521 1111 123334444444321 22345567899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEc
Q 012523 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFN 448 (461)
Q Consensus 372 gGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~ 448 (461)
||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998643 7899999999999875 999999999999998
Q ss_pred cch
Q 012523 449 NVN 451 (461)
Q Consensus 449 ~~~ 451 (461)
|..
T Consensus 233 g~~ 235 (265)
T TIGR02769 233 CDV 235 (265)
T ss_pred CCH
Confidence 874
No 180
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-45 Score=359.96 Aligned_cols=211 Identities=24% Similarity=0.331 Sum_probs=173.0
Q ss_pred ccEEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC----C-C
Q 012523 231 GRIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----M-G 302 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~----~-~ 302 (461)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999996432 249999999999999999999999999999999999999999999999998752 1 3
Q ss_pred HHHHhhcceEEccCC--ccccccHHhhcCCCC---CCCHHHH----HHHHHHccHHHHHHhCCCcccccccCCCCCCChh
Q 012523 303 LKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNEI----WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (461)
Q Consensus 303 ~~~~r~~i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG 373 (461)
...+|+.++|++|++ .+|..|++||+.+.. ....++. .+.++..++ |. ........+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCHH
Confidence 456788899999998 467789999997531 1222222 222332222 11 1234456789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998864 37899999999998764 99999999999998876
Q ss_pred h
Q 012523 451 N 451 (461)
Q Consensus 451 ~ 451 (461)
.
T Consensus 235 ~ 235 (289)
T PRK13645 235 P 235 (289)
T ss_pred H
Confidence 3
No 181
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-45 Score=348.92 Aligned_cols=211 Identities=25% Similarity=0.376 Sum_probs=175.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH-Hhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~-~r~~i 310 (461)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999963 35999999999999999999999999999999999999999999999999998777544 56789
Q ss_pred eEEccCCccccc-cHHhhcCCCCC----CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
+|+||++.+|.. |++||+.+... .+.++.. ..+.+.++.+ |++.........|||||+||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999998875 99999975321 1111111 1122334433 3444445566889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++|++|||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCH
Confidence 9999999999999999999999999998754 47899999999987755 999999999999988773
No 182
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=350.51 Aligned_cols=211 Identities=23% Similarity=0.388 Sum_probs=177.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC-----ceEEEECCEeCCCC--CHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~-----~G~i~i~g~~i~~~--~~~ 304 (461)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4899999999963 35999999999999999999999999999999999999997 69999999988643 345
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCCC---C-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+|+.++|+||++.+|+.|++||+.+... . .. +.+.++++..++.+.+ .........+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHH
Confidence 67889999999999998899999975321 1 11 2233344444443322 23345667899999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRT 230 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999999999987667999999999999876 899999999999998874
No 183
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-45 Score=356.15 Aligned_cols=206 Identities=29% Similarity=0.414 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC--CCCHHHHhhcc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~--~~~~~~~r~~i 310 (461)
++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999963 35999999999999999999999999999999999999999999999999985 23345678889
Q ss_pred eEEccCCc--cccccHHhhcCCC---CCCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEPT--LFRGSVRTNLDPL---GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~~--lf~~ti~~Nl~~~---~~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
+|+||++. ++..|+.+|+.+. .....+ ++.++++..++.++. .....+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHHH
Confidence 99999986 5667899998642 112222 234455555554433 233468999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||++.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999998864 47899999999998865 999999999999998873
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-45 Score=355.56 Aligned_cols=211 Identities=23% Similarity=0.404 Sum_probs=175.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~~~ 304 (461)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 359999999999999999999999999999999999865 789999999999864 3344
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+++.++|++|++.+|++|+++|+.+.. .. . ++.+.++++..++.+.+ .........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHH
Confidence 6788899999999999899999997421 11 1 12234444444442111 12234556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|..
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998766789999999999876 4999999999999998863
No 185
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=352.52 Aligned_cols=211 Identities=23% Similarity=0.384 Sum_probs=175.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC---CCC--CceEEEECCEeCCCC--CHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL---VEP--ENGRILIDGLDICSM--GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl---~~~--~~G~i~i~g~~i~~~--~~~ 304 (461)
.++++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 3599999999999999999999999999999999997 455 589999999998754 345
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+++.++|+||++.+|..|+.+|+.+.. .. .. +++.++++.+++.+.+ .+...+...+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 6788899999999999889999996421 11 11 2234445544443222 22344566889999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999987668999999999998855 999999999999998863
No 186
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.5e-45 Score=352.68 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC---------
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM--------- 301 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~--------- 301 (461)
+.++++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 46999999999963 3599999999999999999999999999999999999999999999999988542
Q ss_pred ----CHHHHhhcceEEccCCccccc-cHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCC
Q 012523 302 ----GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 368 (461)
Q Consensus 302 ----~~~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~ 368 (461)
....+++.++|+||++.+|+. |++||+.+.. .... +++.++++..++.+.. ......
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 134667889999999999975 9999986421 1121 2334444444443322 134457
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998864 47999999999999886 9999999999999
Q ss_pred Eccc
Q 012523 447 FNNV 450 (461)
Q Consensus 447 ~~~~ 450 (461)
+.|.
T Consensus 232 ~~~~ 235 (257)
T PRK10619 232 EEGA 235 (257)
T ss_pred EeCC
Confidence 8876
No 187
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.3e-45 Score=346.31 Aligned_cols=208 Identities=24% Similarity=0.336 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|+++.|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4999999999953 35999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEccCCccccccHHhhcCCCC---CC--CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 312 IIPQEPTLFRGSVRTNLDPLG---MY--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~---~~--~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
|++|++.+|+.|++||+.+.. .. .++++.+.++..++. ++.......+|||||+||++||||+++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999889999996421 11 122233444444432 123345567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEe-CCEEEEccch
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLS-YGSFSFNNVN 451 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~-~G~i~~~~~~ 451 (461)
+|+++||||||++||+.+.+.+.+.+++.. .++|+|++||+++.++.||++++|+ ++..+++|-|
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhh
Confidence 999999999999999999999999999864 3789999999999998899999995 5555666543
No 188
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-45 Score=352.16 Aligned_cols=211 Identities=23% Similarity=0.358 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC--CC---CceEEEECCEeCCCC--CHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EP---ENGRILIDGLDICSM--GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~--~~---~~G~i~i~g~~i~~~--~~~ 304 (461)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|++ +| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999963 35999999999999999999999999999999999995 36 499999999998643 345
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+|+.++|+||++.+|+.|++||+.+.. .. . ++++.++++.+++.+.+ .+.......+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHH
Confidence 6788899999999999999999996421 11 1 12233445555543222 12334566789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|.+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999987667899999999998765 999999999999998874
No 189
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6e-45 Score=351.89 Aligned_cols=210 Identities=24% Similarity=0.362 Sum_probs=173.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC--------HH
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--------LK 304 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~--------~~ 304 (461)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 899999999963 35999999999999999999999999999999999999999999999999986532 24
Q ss_pred HHhhcceEEccCCcccc-ccHHhhcCCC----CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 305 DLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~-~ti~~Nl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
.+|+.++|+||++.+|+ .|++||+.+. .....++..+. ..+.++.+ |++........+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 56788999999999886 5999999642 11122111111 12223332 3333344556889999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999988643 7899999999999865 999999999999988774
No 190
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=7.9e-45 Score=352.30 Aligned_cols=205 Identities=23% Similarity=0.344 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999953 359999999999999999999999999999999999999999999999999988887777888999
Q ss_pred EccCCcc-ccccHHhhcCCCCC--------CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 012523 313 IPQEPTL-FRGSVRTNLDPLGM--------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (461)
Q Consensus 313 v~Q~~~l-f~~ti~~Nl~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l 380 (461)
+||++.+ +..|+++|+.+... .. ++++.++++..++.+.. ......||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHH
Confidence 9999865 45799999965310 01 12344555555554332 33456899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
|||++.+|+++||||||++||+.+.+.+.+.|++..+ +.|+|++||+++.+. .||+|++|++|++++.|.
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence 9999999999999999999999999999999998643 689999999999995 599999999999998876
No 191
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-45 Score=356.69 Aligned_cols=206 Identities=26% Similarity=0.405 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC--CCHHHHhhcc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~--~~~~~~r~~i 310 (461)
++++|++++|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999633 359999999999999999999999999999999999999999999999999852 2344678899
Q ss_pred eEEccCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
+|+||++ .+|..|++||+.+.. ..+. +++.++++..++.++.+ ....+|||||+||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 9999997 467889999996421 1222 23445556555543332 33468999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
||++.+|+++||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||++++|++|++++.|.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999865 3789999999999887 499999999999999886
No 192
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-45 Score=352.74 Aligned_cols=212 Identities=22% Similarity=0.358 Sum_probs=176.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCCC--HH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG--LK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~~--~~ 304 (461)
.++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999953 3599999999999999999999999999999999999985 7999999999986432 34
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
.+|+.++|+||++.+|+.|++||+.+.. ..+.+ ++.++++.+++.+.+ .........+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 5678899999999999999999997421 12222 234455555442211 122344567899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..-
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999987667999999999998865 9999999999999987643
No 193
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=362.32 Aligned_cols=209 Identities=25% Similarity=0.376 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCCC--------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH
Q 012523 232 RIELEDLKVRYRPN--------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL 303 (461)
Q Consensus 232 ~i~~~~v~~~y~~~--------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~ 303 (461)
-|+++|+++.|+.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2358999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhcceEEccCCc--ccc-ccHHhhcCC----CCCCC----HHHHHHHHHHccHHH-HHHhCCCcccccccCCCC
Q 012523 304 K---DLRTKLSIIPQEPT--LFR-GSVRTNLDP----LGMYS----DNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGE 368 (461)
Q Consensus 304 ~---~~r~~i~~v~Q~~~--lf~-~ti~~Nl~~----~~~~~----~~~~~~~~~~~~l~~-~i~~l~~gl~t~~~~~g~ 368 (461)
. .+|++|+||+|+|. +++ .|+.+|+.. ..... .+++.++++.+++.+ ..+ ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYD-----------RYPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhc-----------CCCc
Confidence 4 46778999999994 554 488888742 11112 233455666666632 222 2346
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
+||||||||++|||||+.+|++||+||||++||..+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999988643 7899999999999975 999999999999
Q ss_pred EEccch
Q 012523 446 SFNNVN 451 (461)
Q Consensus 446 ~~~~~~ 451 (461)
+|.|..
T Consensus 234 ve~g~~ 239 (327)
T PRK11308 234 VEKGTK 239 (327)
T ss_pred EEECCH
Confidence 999874
No 194
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=350.63 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~~i 310 (461)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999953 359999999999999999999999999999999999999999999999999987776554 4459
Q ss_pred eEEccCCccccc-cHHhhcCCCCC-C----------C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGM-Y----------S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~-~----------~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
+|+||++.+|+. |+++|+.+... . . +....+. .....++++.+ |++........+|||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYGQ 158 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHHH
Confidence 999999999976 99999975210 0 0 0000000 01122333333 34445556678899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||++||||++.+|++|||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCH
Confidence 9999999999999999999999999999999999999988643 6899999999999865 999999999999988773
No 195
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=350.52 Aligned_cols=212 Identities=21% Similarity=0.411 Sum_probs=176.9
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC--C---CceEEEECCEeCCCC--CH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~--~---~~G~i~i~g~~i~~~--~~ 303 (461)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 46999999999963 359999999999999999999999999999999999986 4 689999999998643 34
Q ss_pred HHHhhcceEEccCCcccc-ccHHhhcCCC----CCCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 304 KDLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~-~ti~~Nl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
..+|+.++|+||++.+|. .|++||+.+. ...+. +++.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHH
Confidence 467888999999999987 5999999642 11121 23444555555543222 12334567899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|||++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|..
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998866789999999999885 4999999999999998873
No 196
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-45 Score=350.94 Aligned_cols=211 Identities=25% Similarity=0.388 Sum_probs=175.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~~~ 304 (461)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999998854 3345
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+++.++|++|++.+|+.|++||+.+.. .. .. +++.++++..++.... .........+|||||+|
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence 6788899999999999999999997431 11 11 2233444444442100 11234456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|.+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPT 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999987667899999999998765 999999999999988774
No 197
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-44 Score=330.41 Aligned_cols=171 Identities=44% Similarity=0.746 Sum_probs=160.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999996543359999999999999999999999999999999999999999999999999988887788889999
Q ss_pred EccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
++|++.+|+.|+.||+ ||||||||++||||++++|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999987 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
|||||++||+.+...+.+.+++..+++|+|++||+++.++.||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998766799999999999998899999999985
No 198
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-44 Score=343.03 Aligned_cols=202 Identities=23% Similarity=0.395 Sum_probs=174.7
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++||+++|++ . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 689999999963 2 249999999999999999999999999999999999999999999999876544 2567999
Q ss_pred EccCCccccc-cHHhhcCCCC-C------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG-M------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~-~------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+||++.+|.+ |+.||+.+.. . ..++++.++++..++.+.++..| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 9999997421 1 11345667788888777666555 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~ 214 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPT 214 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999988643 7899999999998865 999999999999988874
No 199
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=7.2e-42 Score=355.61 Aligned_cols=410 Identities=20% Similarity=0.205 Sum_probs=296.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 012523 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVL---------------IVAIPTVIVAKYIQGYYLSSAR 78 (461)
Q Consensus 14 srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---------------l~~~~~~~~~~~~~~~~~~~~~ 78 (461)
.|++.|+...-.........++.++++++....+++..+..+. .+++..++...++...+.+...
T Consensus 152 QRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li 231 (604)
T COG4178 152 QRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLI 231 (604)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccc
Confidence 6888898887766666666777777777776666654333221 1122222222233444555544
Q ss_pred HHHHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 012523 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATE---WLVLRIETLQNLIILTAA 155 (461)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 155 (461)
+..-......+.+...+...-++.+.|-.|+.|+...++.++......+.+.+...... |.......++. +.....
T Consensus 232 ~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~li 310 (604)
T COG4178 232 RLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLPILI 310 (604)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHHh
Confidence 44444445667777788888899999999999988777776665555544333322222 22222222221 111111
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------CCCCCCccCCCCCCCCCC
Q 012523 156 LLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLP------PEPPAIIEETKPPASWPS 229 (461)
Q Consensus 156 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~------~~~~~~~~~~~~~~~~~~ 229 (461)
..-.++.|.++.|.++.....+..+...+.++...+..+....+...|+.++.+.- ++.+.... .........
T Consensus 311 ~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~ 389 (604)
T COG4178 311 AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNA 389 (604)
T ss_pred ccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccc
Confidence 11234568898888777777677777778888888888999999999999987421 11111000 000000001
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
...|+++|++..-|++. ..+++.|+++++||.+-|.||||||||||+|.|+|++|..+|+|.... -..
T Consensus 390 ~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~ 457 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSA 457 (604)
T ss_pred cceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCc
Confidence 45799999999987655 699999999999999999999999999999999999999999997652 124
Q ss_pred ceEEccCCccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
+-|+||.|++-.||+||-+++-. +++|+++.+++.+++|.++++++.+ .+. =..-||+|||||+++||.+++
T Consensus 458 ~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~ 532 (604)
T COG4178 458 LLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLH 532 (604)
T ss_pred eEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHc
Confidence 79999999999999999997532 3789999999999999999999753 222 135699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeC
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
+|++++|||+||+||+++|..+++.+++..++.|+|.|+||.......++.+-+++
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 99999999999999999999999999998899999999999988887776665543
No 200
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=353.17 Aligned_cols=212 Identities=21% Similarity=0.339 Sum_probs=178.7
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCC--CC
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MG 302 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~--~~ 302 (461)
.+.++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 346999999999953 3599999999999999999999999999999999999984 89999999999864 34
Q ss_pred HHHHhhcceEEccCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 303 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 303 ~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
...+|+.++|++|++.+|+.|++||+.+.. .. . ++++.++++.+++.+.+. +..+..+.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 456788999999999999889999996421 11 1 123445555555533222 23456678999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999987667899999999998765 99999999999999886
No 201
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=348.91 Aligned_cols=211 Identities=21% Similarity=0.368 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCC-CCCHHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC-SMGLKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~-~~~~~~ 305 (461)
.++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999963 3599999999999999999999999999999999999986 5999999999985 345667
Q ss_pred HhhcceEEccCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
+|+.++|+||++.+|..|+.+|+.+.. .. .+ +++.++++.+++.+.+ .........+|||||+||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 788999999999999999999997431 11 11 2233344444443322 223345567899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999997667899999999998776 999999999999998873
No 202
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=352.21 Aligned_cols=210 Identities=22% Similarity=0.384 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCCCC--HHH
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSMG--LKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~~~--~~~ 305 (461)
-+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999953 359999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhhcceEEccCCccccccHHhhcCCCC---CC--C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~--~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
+|+.++|+||++.+|+.|+.+|+.+.. .. . ++++.++++..++.+.+ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 688899999999999899999996421 11 1 12334455555543321 12334556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999987668999999999998865 999999999999988764
No 203
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=367.73 Aligned_cols=205 Identities=22% Similarity=0.369 Sum_probs=175.6
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++.+
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999953 358999999999999999999999999999999999999999999999999987664 46789
Q ss_pred eEEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|||+|++.+|+. |+.||+.+.. ..+. +++.++++..++.++.++.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 9999997531 1222 23455666666655544443 579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
||+++|++|+||||||+||+.+.+.+.+.+++.. .+.|+|++||+++.+. .||+|++|++|++++.|.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcC
Confidence 9999999999999999999999999988887653 3789999999999865 499999999999999887
No 204
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=348.78 Aligned_cols=211 Identities=21% Similarity=0.365 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCC--CHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~--~~~ 304 (461)
.++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999963 3599999999999999999999999999999999999875 799999999998653 334
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+++.++|+||++.+|+.|+++|+.+.. .. .. +++.++++.+++.+.+ ..........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 6688899999999999999999997531 11 11 2334455555543222 12234456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|..
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKT 230 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCH
Confidence 999999999999999999999999999999999999987667899999999998765 999999999999988764
No 205
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=9.9e-45 Score=343.82 Aligned_cols=202 Identities=24% Similarity=0.344 Sum_probs=171.6
Q ss_pred EEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH---HHh
Q 012523 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 307 (461)
Q Consensus 233 i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~---~~r 307 (461)
++++|+++.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999643 14599999999999999999999999999999999999999999999999998776643 467
Q ss_pred hcceEEccCCcccc-ccHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 308 TKLSIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~-~ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
+.++|+||++.+|. .|+.+|+.+.. ..+. +++.++++..++.+.++.. ..+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY-----------PHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHH
Confidence 88999999999987 59999996431 1222 2344555555555444443 467999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEE
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSF 445 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i 445 (461)
+||||++++|+++||||||++||+++.+.+.+.|++.. .++|+|++||+++..+.||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998865 37999999999998777999999999986
No 206
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=349.02 Aligned_cols=213 Identities=22% Similarity=0.334 Sum_probs=177.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCC--CHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~--~~~ 304 (461)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999953 3599999999999999999999999999999999999763 489999999998765 345
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCCC---C-C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
..++.++|++|++.+|+.|++||+.+... . . ++.+.++++.+++.+ ++.+..+....+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence 67888999999999998999999975321 1 1 122334444444322 2223345667899999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchhh
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~~ 453 (461)
|++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..-.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 999999999999999999999999999999999999987667899999999999865 99999999999999887543
No 207
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-44 Score=350.01 Aligned_cols=211 Identities=20% Similarity=0.396 Sum_probs=177.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~~~ 304 (461)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5999999999963 359999999999999999999999999999999999986 479999999998853 3456
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCCC---CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
.+++.++|++|++.+|+.|+.+|+.+... .. ++++.++++.+++.+.+.. .......+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence 67889999999999998899999975321 11 2334445666665443322 23455678999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEe---------CCEEEEc
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLS---------YGSFSFN 448 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~---------~G~i~~~ 448 (461)
+||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. |||+++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987667899999999998765 99999998 8999998
Q ss_pred cch
Q 012523 449 NVN 451 (461)
Q Consensus 449 ~~~ 451 (461)
|..
T Consensus 241 ~~~ 243 (264)
T PRK14243 241 DRT 243 (264)
T ss_pred CCH
Confidence 873
No 208
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=360.53 Aligned_cols=211 Identities=19% Similarity=0.301 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC----CceEEEECCEeCCCCCHHHH
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDL 306 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~----~~G~i~i~g~~i~~~~~~~~ 306 (461)
++++|+++.|+... ..+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.+++.+++
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 79999999996432 3599999999999999999999999999999999999984 89999999999998887665
Q ss_pred hh----cceEEccCCc--ccc-ccHHhhc----CCCCCCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCC
Q 012523 307 RT----KLSIIPQEPT--LFR-GSVRTNL----DPLGMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (461)
Q Consensus 307 r~----~i~~v~Q~~~--lf~-~ti~~Nl----~~~~~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lS 371 (461)
++ .|+||||+|. +++ .|+.+++ ....... ++++.++++.+++.+.. ........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 43 6999999995 443 3666554 2211112 23455666666664211 11234457899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEc
Q 012523 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFN 448 (461)
Q Consensus 372 gGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~ 448 (461)
||||||++|||||+.+|++||+||||++||+.++..+++.|++.. .+.|+|+|||+++.+. .||||++|++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 3789999999999986 4999999999999999
Q ss_pred cch
Q 012523 449 NVN 451 (461)
Q Consensus 449 ~~~ 451 (461)
|..
T Consensus 236 g~~ 238 (326)
T PRK11022 236 GKA 238 (326)
T ss_pred CCH
Confidence 874
No 209
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.3e-44 Score=348.05 Aligned_cols=208 Identities=23% Similarity=0.257 Sum_probs=169.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC--CCCceEEEECCEeCCCCCHHHH-hhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDL-RTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~--~~~~G~i~i~g~~i~~~~~~~~-r~~ 309 (461)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999963 35999999999999999999999999999999999994 7999999999999988776554 445
Q ss_pred ceEEccCCccccc-cHHhhcCCCC----C------CCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCC-CCChh
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLG----M------YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGE-NWSVG 373 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~----~------~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~-~lSgG 373 (461)
++|++|++.+|++ |+++|+.+.. . .+. +++.++++..++.+. ....... .||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hcccccccCcCHH
Confidence 9999999999876 8999985321 0 011 123333333333211 1122223 59999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh--cCEEEEEeCCEEEEccc
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD--SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~vl~~G~i~~~~~ 450 (461)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 47899999999999875 79999999999999887
Q ss_pred hh
Q 012523 451 NF 452 (461)
Q Consensus 451 ~~ 452 (461)
.-
T Consensus 229 ~~ 230 (243)
T TIGR01978 229 VE 230 (243)
T ss_pred HH
Confidence 53
No 210
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=346.24 Aligned_cols=204 Identities=27% Similarity=0.384 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999964 359999999999999999999999999999999999999999999999999876654 3678999
Q ss_pred EccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++|++.+|.+ |+++|+.+.. ..+ ++++.++++..++.+++...| .+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999965 9999986421 111 234555666666665554443 68999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+++|+++||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~ 215 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTP 215 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999988653 7899999999998765 999999999999988863
No 211
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=368.63 Aligned_cols=191 Identities=26% Similarity=0.377 Sum_probs=165.1
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH----hhcceEEccCCccccc-c
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG-S 323 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-t 323 (461)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+ +++++|++|++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776553 3579999999999964 9
Q ss_pred HHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 324 VRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 324 i~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
++||+.+.. ..+ ++++.++++.+++.++.+..| .+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999997531 112 234555666666655554443 67999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 397 TASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|++||+.+.+.+++.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~ 248 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCC
Confidence 99999999999999998863 37899999999998765 99999999999998775
No 212
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=348.75 Aligned_cols=211 Identities=24% Similarity=0.397 Sum_probs=176.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCC--CHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~--~~~ 304 (461)
.|+++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 3599999999999999999999999999999999999984 899999999988653 234
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+++.++|++|++.+|..|+++|+.+.. ...+ +++.++++..++.+.+. ........+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHH
Confidence 5678899999999999999999997421 1111 22344555555433221 2234566889999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|..
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT 229 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999998766789999999999765 4999999999999988764
No 213
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=350.65 Aligned_cols=213 Identities=23% Similarity=0.356 Sum_probs=176.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CCH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~~ 303 (461)
..++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 35999999999963 349999999999999999999999999999999999997 699999999999853 345
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCC---CCCHH-----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDN-----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~~~~-----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
..+++.++|+||++.+|..|++||+.+.. ...++ .+.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 56788999999999999889999997421 12211 122233333221 1222334556788999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|.+-
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999987667999999999998765 9999999999999988753
No 214
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.5e-44 Score=344.92 Aligned_cols=205 Identities=25% Similarity=0.355 Sum_probs=173.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 478999999964 359999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EccCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+||++.+|++ |++||+.+.. ..+ ++++.++++..++.+..+ ....+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 9999999975 9999997432 111 123344445554443333 33468999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
+++|++++|||||++||+.+++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+.-
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 216 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPD 216 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999988643 6899999999998765 9999999999999988743
No 215
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.1e-44 Score=359.26 Aligned_cols=197 Identities=24% Similarity=0.388 Sum_probs=166.7
Q ss_pred EeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc
Q 012523 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (461)
Q Consensus 241 ~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 320 (461)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+||+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4642 359999999999999999999999999999999999999999999999999875 3456788999999999998
Q ss_pred cc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 321 RG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 321 ~~-ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
.. |++||+.+.. ..+ ++++.++++..++.+.. .....+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999996421 112 12344555555554332 33446899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 393 LDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~ 208 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTP 208 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999998864 47899999999999875 999999999999988763
No 216
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-44 Score=348.08 Aligned_cols=200 Identities=23% Similarity=0.294 Sum_probs=168.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 3599999999999999999999999999999999999999999999999988642 245899
Q ss_pred EccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++|++.+|+ .|+++|+.+.. .... +++.+.++..++.+.. .....+||||||||++||||+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999887 59999996421 1121 2344455555554433 334578999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEe--CCEEEEccc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLS--YGSFSFNNV 450 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~--~G~i~~~~~ 450 (461)
+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|+ +|++++.+.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 99999999999999999999999999998863 37899999999998865 99999998 599998753
No 217
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=353.06 Aligned_cols=212 Identities=22% Similarity=0.386 Sum_probs=177.2
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCC--CCH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~--~~~ 303 (461)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45999999999964 359999999999999999999999999999999999997 689999999999864 345
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCC---CCC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
..+++.++|+||++.+|+.|+.||+.+.. ... ++++.++++..++...+. ........+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHH
Confidence 56788999999999999889999996421 111 234555566655532221 12345567899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEE-EEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVM-VLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~-vl~~G~i~~~~~~ 451 (461)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|..
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCH
Confidence 99999999999999999999999999999999999998667899999999999876 99975 5799999988763
No 218
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=350.10 Aligned_cols=214 Identities=21% Similarity=0.330 Sum_probs=179.5
Q ss_pred CcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCC---
Q 012523 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--- 300 (461)
Q Consensus 229 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~--- 300 (461)
..+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 13 ~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3456999999999963 3599999999999999999999999999999999999975 79999999987742
Q ss_pred -CCHHHHhhcceEEccCCccccccHHhhcCCCC---CC-----CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCC
Q 012523 301 -MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (461)
Q Consensus 301 -~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-----~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lS 371 (461)
.+...+++.++|++|++.+|.+|++||+.+.. .. .++++.++++.+++.+ ++.+..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 33456788899999999999899999997431 11 1234455555555432 22233455668899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 372 gGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||+||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987667899999999999864 99999999999999887
Q ss_pred h
Q 012523 451 N 451 (461)
Q Consensus 451 ~ 451 (461)
+
T Consensus 244 ~ 244 (265)
T PRK14252 244 T 244 (265)
T ss_pred H
Confidence 4
No 219
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-44 Score=349.92 Aligned_cols=211 Identities=25% Similarity=0.377 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCCC-HHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG-LKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~~-~~~ 305 (461)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 3599999999999999999999999999999999999986 7999999999987653 346
Q ss_pred HhhcceEEccCCccccccHHhhcCCCC----CCCHHHHH----HHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~ti~~Nl~~~~----~~~~~~~~----~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
+++.++|+||++.+|+.|+++|+.+.. ..++++.. +.++..++.+ .+.+.+.....+|||||+||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHHH
Confidence 788999999999999999999997531 12333322 2333333322 12233456678999999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~ 246 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999987667899999999998765 999999999999988774
No 220
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=348.76 Aligned_cols=210 Identities=22% Similarity=0.370 Sum_probs=177.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~--~~~~ 304 (461)
.++++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 5999999999963 3599999999999999999999999999999999999985 48999999998854 3445
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+++.++|+||++.+|+.|++||+.+.. ...+ +.+.++++.+++.+.+.. ........|||||+|
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHHH
Confidence 6788999999999999999999996421 1121 234455666665433221 234556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEe-----CCEEEEccc
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLS-----YGSFSFNNV 450 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~-----~G~i~~~~~ 450 (461)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.|.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999987667899999999999875 99999998 599999887
No 221
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.2e-44 Score=342.77 Aligned_cols=212 Identities=24% Similarity=0.329 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC---CCceEEEECCEeCCCCCHHHHh
Q 012523 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 233 i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~---~~~G~i~i~g~~i~~~~~~~~r 307 (461)
+.++||+|+|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999765 2569999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hcceEEccCCccccc-cHHhhcCCCCC-CCHHHHHHHHHHccHHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 308 TKLSIIPQEPTLFRG-SVRTNLDPLGM-YSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~-ti~~Nl~~~~~-~~~~~~~~~~~~~~l~~-~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+.++|+||++.+|++ |++||+.+... .......+......... .++.+ ++.........+|||||+||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 99999974211 00000000000000111 22221 222333445678999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCc-hhh-hhcCEEEEEeCCEEEEcc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRV-PTI-TDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~-~~~-~~~d~i~vl~~G~i~~~~ 449 (461)
+++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||++ +.+ +.||++++|++|+++++|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 478999999998 354 569999999999999876
No 222
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-44 Score=328.80 Aligned_cols=172 Identities=33% Similarity=0.528 Sum_probs=157.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC--HHHHhhcc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~--~~~~r~~i 310 (461)
|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++ ...+++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 478999999953 35999999999999999999999999999999999999999999999999998775 56678899
Q ss_pred eEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
+|++|++.+|.. |++||+.+. ||||||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998864 999998642 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 390 ILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
++||||||++||+.+...+.+.+++..+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988654 5899999999999985 99999999985
No 223
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-44 Score=348.03 Aligned_cols=205 Identities=23% Similarity=0.327 Sum_probs=174.6
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC--------ceEEEECCEeCCCCCHH
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--------NGRILIDGLDICSMGLK 304 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~--------~G~i~i~g~~i~~~~~~ 304 (461)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999953 35999999999999999999999999999999999999998 99999999999887777
Q ss_pred HHhhcceEEccCCc-cccccHHhhcCCCC-C-------CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCCh
Q 012523 305 DLRTKLSIIPQEPT-LFRGSVRTNLDPLG-M-------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 372 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~-lf~~ti~~Nl~~~~-~-------~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSg 372 (461)
.+++.++|+||++. +|..|++||+.+.. . .. ++.+.++++..++ ++..+....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCH
Confidence 88888999999986 56789999996531 1 01 1123344444444 4444556688999
Q ss_pred hHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEE
Q 012523 373 GQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVL 440 (461)
Q Consensus 373 Gq~Qrl~lARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl 440 (461)
|||||++||||++ .+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+. .||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998643 689999999999886 59999999
Q ss_pred eCCEEEEccc
Q 012523 441 SYGSFSFNNV 450 (461)
Q Consensus 441 ~~G~i~~~~~ 450 (461)
++|++++.|.
T Consensus 229 ~~G~i~~~g~ 238 (272)
T PRK13547 229 ADGAIVAHGA 238 (272)
T ss_pred ECCeEEEecC
Confidence 9999998876
No 224
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-44 Score=327.33 Aligned_cols=170 Identities=32% Similarity=0.560 Sum_probs=156.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 468999999963 35999999999999999999999999999999999999999999999999987655 567889999
Q ss_pred EccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 313 IPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
+||++.+|.+ |++||+. |||||+||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998876 9999973 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEE
Q 012523 392 ILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSF 445 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i 445 (461)
+|||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+. .||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999864 3689999999999887 4999999999974
No 225
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-44 Score=348.61 Aligned_cols=212 Identities=21% Similarity=0.368 Sum_probs=177.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCC--CCH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~--~~~ 303 (461)
..|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999963 3599999999999999999999999999999999999863 69999999998854 334
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCCC---C---CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
..+|+.++|+||++.+|+.|+.+|+.+... . .++.+.++++.+++.+.+. .........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence 467889999999999998899999975321 1 1233445556665543332 12345567899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEe---------CCEEEE
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLS---------YGSFSF 447 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~---------~G~i~~ 447 (461)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988667899999999998865 99999998 899999
Q ss_pred ccch
Q 012523 448 NNVN 451 (461)
Q Consensus 448 ~~~~ 451 (461)
.|..
T Consensus 250 ~g~~ 253 (274)
T PRK14265 250 FSPT 253 (274)
T ss_pred eCCH
Confidence 8874
No 226
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-44 Score=347.63 Aligned_cols=212 Identities=21% Similarity=0.362 Sum_probs=175.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~--~~~~ 304 (461)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999998853 3455
Q ss_pred HHhhcceEEccCCcccc-ccHHhhcCCCC---C-CCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 305 DLRTKLSIIPQEPTLFR-GSVRTNLDPLG---M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~-~ti~~Nl~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
.+|+.++|++|++.+|. .|+++|+.+.. . .+. +.+.++++..++.+.+ .........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 67889999999999987 59999996421 1 111 2334445555543221 1233455678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcCEEEEEe------CCEEEEc
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLS------YGSFSFN 448 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~vl~------~G~i~~~ 448 (461)
||++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999998766789999999999876 599999997 8999998
Q ss_pred cchh
Q 012523 449 NVNF 452 (461)
Q Consensus 449 ~~~~ 452 (461)
|..-
T Consensus 235 ~~~~ 238 (258)
T PRK14241 235 DDTE 238 (258)
T ss_pred CCHH
Confidence 8753
No 227
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=359.22 Aligned_cols=212 Identities=21% Similarity=0.347 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCC--CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC----CCceEEEECCEeCCCCCHHH
Q 012523 232 RIELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~--~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~----~~~G~i~i~g~~i~~~~~~~ 305 (461)
-|+++|+++.|+. +...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++..+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999953 22359999999999999999999999999999999999996 58999999999998887765
Q ss_pred Hh----hcceEEccCCcc--cc-ccHHhhcCCC-------CC-C-C----HHHHHHHHHHccHHHHHHhCCCcccccccC
Q 012523 306 LR----TKLSIIPQEPTL--FR-GSVRTNLDPL-------GM-Y-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSD 365 (461)
Q Consensus 306 ~r----~~i~~v~Q~~~l--f~-~ti~~Nl~~~-------~~-~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~ 365 (461)
++ +.|+||||+|.. ++ .|+.+|+... .. . . ++++.++++.+++.+.. .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 43 479999999973 33 4888887421 00 0 1 23455666666664211 01123
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeC
Q 012523 366 EGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSY 442 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~ 442 (461)
...+|||||+||++|||||+.+|++||+||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3468999999999999999999999999999999999999999999998643 7899999999999965 999999999
Q ss_pred CEEEEccch
Q 012523 443 GSFSFNNVN 451 (461)
Q Consensus 443 G~i~~~~~~ 451 (461)
|+|++.|..
T Consensus 235 G~ive~g~~ 243 (330)
T PRK15093 235 GQTVETAPS 243 (330)
T ss_pred CEEEEECCH
Confidence 999999874
No 228
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.2e-44 Score=357.11 Aligned_cols=212 Identities=24% Similarity=0.366 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEeCCCCCHHHH
Q 012523 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDL 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~i~~~~~~~~ 306 (461)
-++++|+++.|+.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 48999999999532 235999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hcceEEccCCc--ccc-ccHHhhcC----CCCCCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCC
Q 012523 307 R----TKLSIIPQEPT--LFR-GSVRTNLD----PLGMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (461)
Q Consensus 307 r----~~i~~v~Q~~~--lf~-~ti~~Nl~----~~~~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lS 371 (461)
+ +.|+||||+|. +++ .|+.+|+. .....+.+ ++.+.++.+++ +++. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 47999999983 554 47777763 11122322 23334444433 3222 22455678899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEc
Q 012523 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFN 448 (461)
Q Consensus 372 gGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~ 448 (461)
|||+||++|||||+.+|++||+||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988643 7899999999999875 999999999999999
Q ss_pred cch
Q 012523 449 NVN 451 (461)
Q Consensus 449 ~~~ 451 (461)
|..
T Consensus 244 g~~ 246 (330)
T PRK09473 244 GNA 246 (330)
T ss_pred CCH
Confidence 874
No 229
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.9e-44 Score=346.86 Aligned_cols=207 Identities=22% Similarity=0.337 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEeCCCC-----CH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSM-----GL 303 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~i~~~-----~~ 303 (461)
-++++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 35999999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHHhhcceEEccCCccccc-cHHhhcCCCCC------------CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCC
Q 012523 304 KDLRTKLSIIPQEPTLFRG-SVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEG 367 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g 367 (461)
..+++.++|+||++.+|.. |+++|+.+... .. ++++.++++..++.+.. ....
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCCc
Confidence 4567889999999998874 99999964210 01 12344555555554433 3345
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhh-hcCEEEEEeCCE
Q 012523 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGS 444 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~vl~~G~ 444 (461)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+. .||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6799999999999999999999999999999999999999999999864 3789999999999765 599999999999
Q ss_pred EEEccch
Q 012523 445 FSFNNVN 451 (461)
Q Consensus 445 i~~~~~~ 451 (461)
+++.|..
T Consensus 231 i~~~g~~ 237 (262)
T PRK09984 231 VFYDGSS 237 (262)
T ss_pred EEEeCCH
Confidence 9988763
No 230
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-44 Score=351.79 Aligned_cols=212 Identities=22% Similarity=0.348 Sum_probs=175.3
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCCC--CH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~~--~~ 303 (461)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35999999999963 349999999999999999999999999999999999864 4999999999988643 23
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
..+|+.++|++|++.+|+.|+.||+.+.. .. +. +++.++++..++.+.+ ..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 45788899999999999889999997531 11 11 2233444444432211 1123455678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999987667899999999999865 999999999999998873
No 231
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-44 Score=337.36 Aligned_cols=197 Identities=23% Similarity=0.333 Sum_probs=164.2
Q ss_pred eEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC----HHHHhhcceE
Q 012523 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSI 312 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~----~~~~r~~i~~ 312 (461)
||+++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999642 24 99999999 999999999999999999999999999999999999886432 2356788999
Q ss_pred EccCCcccc-ccHHhhcCCCCC-CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 313 IPQEPTLFR-GSVRTNLDPLGM-YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~~-~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
+||++.+|. .|+++|+.+... .. ++++.+.++..++. ........+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-----------HLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-----------hHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 999999886 499999974321 11 12334444444443 33345567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999988643 7899999999998865 9999999999998875
No 232
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-44 Score=333.74 Aligned_cols=189 Identities=24% Similarity=0.289 Sum_probs=160.9
Q ss_pred EEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC---CCceEEEECCEeCCCCCHHHHh
Q 012523 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 233 i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~---~~~G~i~i~g~~i~~~~~~~~r 307 (461)
+.++||+|.|+.. +.++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999753 4569999999999999999999999999999999999999 89999999999987664 3567
Q ss_pred hcceEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 308 TKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
+.++|++|++.+|.. |++||+.+.... . ..+....||||||||++||||++.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC---------K------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh---------c------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 889999999988875 999999642100 0 123346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEc-cCchhh-hhcCEEEEEeCCEEEEcc
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIA-HRVPTI-TDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~~~~~-~~~d~i~vl~~G~i~~~~ 449 (461)
+|++|||||||++||+.+++.+.+.+++..+ +.|+|+++ |+.+.+ +.||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998643 46766665 455665 459999999999998765
No 233
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.5e-44 Score=348.40 Aligned_cols=208 Identities=26% Similarity=0.379 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCC-------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH
Q 012523 232 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~-------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~ 304 (461)
.|+++||+++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 23599999999999999999999999999999999999999999999999998765555
Q ss_pred HHhhcceEEccCCc--cccc-cHHhhcCCC----CCCC----HHHHHHHHHHccHH-HHHHhCCCcccccccCCCCCCCh
Q 012523 305 DLRTKLSIIPQEPT--LFRG-SVRTNLDPL----GMYS----DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSV 372 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~--lf~~-ti~~Nl~~~----~~~~----~~~~~~~~~~~~l~-~~i~~l~~gl~t~~~~~g~~lSg 372 (461)
..++.++|+||++. +++. |+.+|+.+. .... ++++.++++.+++. +..+ ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 56678999999985 4443 888887531 1111 23455666666662 3222 22367999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 373 Gq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
|||||++||||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999864 37899999999999886 9999999999999877
Q ss_pred c
Q 012523 450 V 450 (461)
Q Consensus 450 ~ 450 (461)
.
T Consensus 233 ~ 233 (267)
T PRK15112 233 S 233 (267)
T ss_pred C
Confidence 6
No 234
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-44 Score=345.88 Aligned_cols=211 Identities=19% Similarity=0.294 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCC--CHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~--~~~ 304 (461)
.+.+++++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999953 3599999999999999999999999999999999999987 799999999998643 334
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCCC---C---CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
.+++.++|+||++.+|..|+.||+.+... . .++++.++++.+++.+.+.. ..++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 67788999999999998999999975321 1 12355667777776544332 23456678999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEe--------CCEEEEcc
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLS--------YGSFSFNN 449 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~--------~G~i~~~~ 449 (461)
+||||++++|++|||||||++||+.+.+.+.+.+++..+++|+|++||+++.+.. |||+++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987667899999999998765 99999996 89999988
Q ss_pred ch
Q 012523 450 VN 451 (461)
Q Consensus 450 ~~ 451 (461)
.+
T Consensus 239 ~~ 240 (261)
T PRK14263 239 PT 240 (261)
T ss_pred CH
Confidence 73
No 235
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=345.27 Aligned_cols=211 Identities=22% Similarity=0.345 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC--C---CceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~--~---~~G~i~i~g~~i~~--~~~~ 304 (461)
.|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999963 459999999999999999999999999999999999975 5 59999999998864 2344
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+++.++|++|++.+|+.|+++|+.+.. .. .+ +++.++++.+++.+. +.........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHHH
Confidence 6678899999999999899999996421 11 11 223334444443221 222334556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999987667899999999999865 999999999999988763
No 236
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9.1e-44 Score=337.87 Aligned_cols=202 Identities=25% Similarity=0.403 Sum_probs=173.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 468999999963 35999999999999999999999999999999999999999999999999875322 247999
Q ss_pred EccCCcccc-ccHHhhcCCC---CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 313 IPQEPTLFR-GSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
+||++.+|. .|+++|+.+. ....++++.++++..++.+..+. ...+|||||+||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998642 12245566677777777655433 23679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 389 RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|..
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecCh
Confidence 9999999999999999999999998864 4789999999999886 5999999999999987763
No 237
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-44 Score=344.29 Aligned_cols=211 Identities=22% Similarity=0.397 Sum_probs=178.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCCC--CHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~~--~~~ 304 (461)
.++++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999963 359999999999999999999999999999999999874 4899999999998653 355
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCC---C-CCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.+++.++|+||++.+|+.|+++|+.+.. . .++ +++.++++.+++.+.+.. .......+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 6788999999999999999999997421 1 122 234556666666544432 134556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++++|++|+|||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence 999999999999999999999999999999999999987668899999999998776 899999999999998763
No 238
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=321.79 Aligned_cols=206 Identities=27% Similarity=0.422 Sum_probs=177.7
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
+++++++++|++ ...+++|+||+++.||++||.|||||||||++++|.+++.|++|.|.+||.|.... +...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 678999999975 33489999999999999999999999999999999999999999999999998774 5678999999
Q ss_pred EccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++-+..+|. .|.+|||.++. ..++ .++.+..+..++.+.++ .+..++|-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 998877875 49999998653 2222 33444555555555443 34467999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+++|++++|||||||||..+.+.+++.+.+.+. ++++|+.||.++.++. ||+|+++++|+++..|+-
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~ 217 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSI 217 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCH
Confidence 999999999999999999999999999998765 8999999999999995 999999999999998873
No 239
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-44 Score=340.52 Aligned_cols=202 Identities=25% Similarity=0.403 Sum_probs=173.7
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++ + +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999963 3 8999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred EccCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++|++.+|. .|+.||+.+.. ..+ ++++.++++..++.+++++. ..+|||||+||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHHH
Confidence 999999885 69999996421 111 23345566666666555443 367999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+++|++++|||||++||+.+.+.+.+.+++... ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 213 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999988643 7899999999998775 99999999999999886
No 240
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=343.29 Aligned_cols=211 Identities=24% Similarity=0.395 Sum_probs=173.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC-----ceEEEECCEeCCC--CCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~-----~G~i~i~g~~i~~--~~~~ 304 (461)
.++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999963 35999999999999999999999999999999999999874 8999999999864 3345
Q ss_pred HHhhcceEEccCCccccc-cHHhhcCCCC---CC-CHHHHHH----HHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MY-SDNEIWE----AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~-~~~~~~~----~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
.+|+.++|++|++.+|.. |+.||+.+.. .. .+++..+ .++..++.+.+ ++ .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~----~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KD----RLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hh----hhcCCcccCCHHHH
Confidence 678889999999999875 9999996421 11 2222222 22333322211 11 22344578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999987667999999999998875 999999999999998774
No 241
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=344.84 Aligned_cols=211 Identities=22% Similarity=0.393 Sum_probs=176.5
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC-----ceEEEECCEeCCC--CCH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~-----~G~i~i~g~~i~~--~~~ 303 (461)
+.|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 35999999999953 34999999999999999999999999999999999999985 8999999998753 344
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
..+|+.++|++|++.+|+.|++||+.+.. .. ++ +.+.++++..++.+++. ...+....+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 56788899999999999999999996421 11 21 23445555655543332 223456678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeC-----CEEEE
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY-----GSFSF 447 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~-----G~i~~ 447 (461)
||++||||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998853 47999999999998875 999999999 99999
Q ss_pred ccc
Q 012523 448 NNV 450 (461)
Q Consensus 448 ~~~ 450 (461)
.|.
T Consensus 237 ~~~ 239 (261)
T PRK14258 237 FGL 239 (261)
T ss_pred eCC
Confidence 876
No 242
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=358.31 Aligned_cols=202 Identities=25% Similarity=0.350 Sum_probs=172.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC----CHHHHhh
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRT 308 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~----~~~~~r~ 308 (461)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....++
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 99999953 2 23 89999999999999999999999999999999999999999999998653 2334678
Q ss_pred cceEEccCCcccc-ccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 309 KLSIIPQEPTLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 309 ~i~~v~Q~~~lf~-~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
.++|++|++.+|+ .|++||+.+.. ...++++.+.++..++.+..++. ..+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHHc
Confidence 8999999999996 59999997542 23345566677777765555444 36799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~ 212 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999988643 6899999999998765 99999999999998876
No 243
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=325.27 Aligned_cols=212 Identities=25% Similarity=0.437 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH-Hhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~-~r~~i 310 (461)
-++++|++..|++ ..+|+++||++++||+++++||||+||||++|.|+|+.+|.+|+|.++|.|+...++++ .|.-|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999964 35999999999999999999999999999999999999999999999999999998875 46679
Q ss_pred eEEccCCccccc-cHHhhcCCCCCCCHH-HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGMYSDN-EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~-~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
+||||...+|+. ||+|||.++....+. +. ....+++..+-+| -+......++.+|||||+|.+||||||+.+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999965 999999864321111 11 1111333334444 2555667788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 389 RILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
++|+|||||.+|-|.-.+.|.+.+++..+ +.||++|-++..... .+||.+||++|+|+.+|+
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecC
Confidence 99999999999999999999999998764 569999999988655 599999999999999997
No 244
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.1e-43 Score=326.35 Aligned_cols=177 Identities=34% Similarity=0.525 Sum_probs=158.3
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3599999999999999999999999999999999999999999999999999888888888889999
Q ss_pred ccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 012523 314 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (461)
Q Consensus 314 ~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliL 393 (461)
+| +++..++.+++.. ...+|||||+||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 5566666554433 3467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEcc
Q 012523 394 DEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 394 DEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~ 449 (461)
||||++||+++.+.+.+.+++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999988654 689999999999985 59999999999998754
No 245
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.7e-44 Score=359.78 Aligned_cols=200 Identities=20% Similarity=0.234 Sum_probs=167.2
Q ss_pred EEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCE----eCCCCCHHHHh----hc
Q 012523 238 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL----DICSMGLKDLR----TK 309 (461)
Q Consensus 238 v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~----~i~~~~~~~~r----~~ 309 (461)
+..+|+ ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...++ ++
T Consensus 30 ~~~~~g--~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 30 ILDETG--LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHhhC--CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 334453 234899999999999999999999999999999999999999999999996 56666655443 57
Q ss_pred ceEEccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
++||+|++.+|+ .|++||+.+.. ..++ ++..++++.+++.++.+.. ..+||||||||++||
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LA 176 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLA 176 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 999999999997 69999997431 1222 3345667777665554443 357999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
|||+.+|++||||||||+||+.+.+.+++.|.+..+ ++|+|+|||+++.+. .||||++|++|++++.|.
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999988643 789999999999875 599999999999999887
No 246
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=350.49 Aligned_cols=212 Identities=25% Similarity=0.422 Sum_probs=177.3
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-----CCceEEEECCEeCCCC--CH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-----~~~G~i~i~g~~i~~~--~~ 303 (461)
..|+++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 46999999999964 359999999999999999999999999999999999986 6899999999998643 34
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCCC---------------C-----CHHHHHHHHHHccHHHHHHhCCCcccccc
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---------------Y-----SDNEIWEAMEKCQLKATISRLPMLLDSSV 363 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---------------~-----~~~~~~~~~~~~~l~~~i~~l~~gl~t~~ 363 (461)
..+|+.++|+||++.+|+.|++||+.+... . .++++.++++.+++. .++++..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHHh
Confidence 567889999999999999999999974210 0 012233444444432 2333445
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEE-EEEe
Q 012523 364 SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMV-MVLS 441 (461)
Q Consensus 364 ~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i-~vl~ 441 (461)
.....+|||||+||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6667899999999999999999999999999999999999999999999988667899999999999865 9997 5789
Q ss_pred CCEEEEccch
Q 012523 442 YGSFSFNNVN 451 (461)
Q Consensus 442 ~G~i~~~~~~ 451 (461)
+|++++.|..
T Consensus 275 ~G~i~~~g~~ 284 (305)
T PRK14264 275 GGELVEYDDT 284 (305)
T ss_pred CCEEEEeCCH
Confidence 9999998873
No 247
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.2e-43 Score=329.79 Aligned_cols=182 Identities=25% Similarity=0.401 Sum_probs=160.2
Q ss_pred cEEEEeEEEEeCCC----CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC--CCCceEEEECCEeCCCCCHHH
Q 012523 232 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~----~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~--~~~~G~i~i~g~~i~~~~~~~ 305 (461)
.++++||+|+|++. ..++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999642 245999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhhcceEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 306 LRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
+++.++|++|++.+|.. |++||+.+.. . +. .|||||+||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-----~----~~------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-----K----LR------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-----H----hc------------------------cCCHHHHHHHHHHHHH
Confidence 67889999999998875 9999985210 0 00 6999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch-hhh-hcCEEEEEeCCEEEEcc
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVP-TIT-DSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~~~-~~d~i~vl~~G~i~~~~ 449 (461)
+++|++++|||||++||+.+.+.+.+.|++.. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 4789999999996 454 59999999999998754
No 248
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.6e-43 Score=341.05 Aligned_cols=211 Identities=24% Similarity=0.390 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEe-----CCCCCHHH-
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKD- 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~-----i~~~~~~~- 305 (461)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999964 359999999999999999999999999999999999999999999999998 77666544
Q ss_pred ---HhhcceEEccCCc--ccc-ccHHhhcCC----CCCCCHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhH
Q 012523 306 ---LRTKLSIIPQEPT--LFR-GSVRTNLDP----LGMYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQ 374 (461)
Q Consensus 306 ---~r~~i~~v~Q~~~--lf~-~ti~~Nl~~----~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq 374 (461)
.++.++|+||++. ++. .|+.+|+.. .......+..+ ...++++.++ ++ +.....+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVE--IDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcC--CChhHHhCCCccCCHHH
Confidence 3567999999984 343 478888742 11111111111 1234455543 32 34566778999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+||++||||++.+|++|||||||++||+.+.+.+.+.+++..+ +.|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999987543 7899999999999975 999999999999988763
No 249
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.5e-45 Score=324.73 Aligned_cols=215 Identities=26% Similarity=0.415 Sum_probs=176.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH-Hhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~-~r~~i 310 (461)
.+..+|+.++|. ++++++++||++++||+||+.|||||||||.+.++.|+.+|++|+|.+||.|++.++... -|.-|
T Consensus 4 ~L~a~~l~K~y~--kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhC--CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 478899999995 345999999999999999999999999999999999999999999999999999998764 35559
Q ss_pred eEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
||+|||+.+|.+ ||+|||...-+..+.+.+..-++..++..++.+ ++...-...+.+||||||+|+.|||||+.+|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999977 999999643222111111122233333334333 23334456678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCc-hhhhhcCEEEEEeCCEEEEccc
Q 012523 390 ILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRV-PTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~-~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
+++||||++|+||.+-..|++.++.++. +..|++.-|+. +++.-|||.|++.+|++...|.
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCC
Confidence 9999999999999999999999988654 67888888997 5677899999999999999887
No 250
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=9.6e-44 Score=333.50 Aligned_cols=193 Identities=26% Similarity=0.383 Sum_probs=161.8
Q ss_pred EEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH----HHHhhcc
Q 012523 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTKL 310 (461)
Q Consensus 235 ~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~----~~~r~~i 310 (461)
++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999963 359999999999999999999999999999999999999999999999999764432 2356789
Q ss_pred eEEccCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~-~ti~~Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+|++|++.+|. .|++||+.+.. ... ++++.++++..++.+..+ ....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999999987 59999996421 111 234455666666544333 334679999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEE
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
|++++|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.++.||++++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 378999999999988889999875
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=329.10 Aligned_cols=181 Identities=24% Similarity=0.356 Sum_probs=159.2
Q ss_pred cEEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC--CCCceEEEECCEeCCCCCHHHHh
Q 012523 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 232 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~--~~~~G~i~i~g~~i~~~~~~~~r 307 (461)
.|+++|+++.|++. ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 246999999999999999999999999999999999986 489999999999875 4567
Q ss_pred hcceEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 308 TKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
+.++|++|++.+|.. |+++|+.+.. .++ +|||||+||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988875 9999986310 000 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh--hhhcCEEEEEeC-CEEEEcc
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSY-GSFSFNN 449 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~vl~~-G~i~~~~ 449 (461)
+|++++|||||++||+.+.+.+.+.+++.. +++|+|++||+++. .+.||++++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998864 37899999999983 456999999999 9999875
No 252
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.9e-43 Score=325.20 Aligned_cols=172 Identities=30% Similarity=0.493 Sum_probs=155.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH-HHHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~-~~~r~~i 310 (461)
.++++|++++| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ..+++.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988764 4567889
Q ss_pred eEEccCC---ccc-cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 311 SIIPQEP---TLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 311 ~~v~Q~~---~lf-~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
+|++|++ .++ ..|++||+.+... ||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999864210 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
+|++|+|||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998864 47899999999998876 999999999974
No 253
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.6e-43 Score=318.61 Aligned_cols=164 Identities=32% Similarity=0.450 Sum_probs=149.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4789999999643 45999999999999999999999999999999999999999999999873 57999
Q ss_pred EccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
++|++.+++.|++||+.+. ....||||||||++||||++++|+++|
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999888999999642 236799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
|||||++||+.+.+.+.+.+++. ++|+|++||+++....||++++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999876 589999999999887899999998863
No 254
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-43 Score=339.79 Aligned_cols=211 Identities=25% Similarity=0.373 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECC------EeCCCCCHHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG------LDICSMGLKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g------~~i~~~~~~~ 305 (461)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++..++...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999953 3599999999999999999999999999999999999999997666665 5666667777
Q ss_pred HhhcceEEccCCccccc-cHHhhcCCCC---CC-CHHH----HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 306 LRTKLSIIPQEPTLFRG-SVRTNLDPLG---MY-SDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~-~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
+|+.++|++|++.+|.+ |+.+|+.+.. .. .+++ +.++++..++.+.+ ..........|||||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 88999999999999876 9999997421 11 2222 23444444443211 11234456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||++.+|++++|||||++||+.+++.+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|..
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999998766799999999999985 5999999999999988764
No 255
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.6e-43 Score=326.94 Aligned_cols=182 Identities=27% Similarity=0.373 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC--CCCCceEEEECCEeCCCCCHHHH-hhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl--~~~~~G~i~i~g~~i~~~~~~~~-r~~ 309 (461)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999963 3599999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred ceEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
++|+||++.+|++ ++++|+ ... ..+|||||+||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~~-----------~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RYV-----------NEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hhc-----------cccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998876 555554 011 1469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhh--hcCEEEEEeCCEEEEccch
Q 012523 389 RILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTIT--DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~--~~d~i~vl~~G~i~~~~~~ 451 (461)
++++|||||++||+.+.+.+.+.|++..+ ++|+|++||+++.++ .||++++|++|++++.|..
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 99999999999999999999999988643 789999999999988 6999999999999998853
No 256
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6e-43 Score=341.22 Aligned_cols=213 Identities=24% Similarity=0.375 Sum_probs=174.1
Q ss_pred cEEEEeEEEEeCCC-------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH-
Q 012523 232 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL- 303 (461)
Q Consensus 232 ~i~~~~v~~~y~~~-------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~- 303 (461)
.|+++||++.|++. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999631 3469999999999999999999999999999999999999999999999999887665
Q ss_pred --HHHhhcceEEccCCc--cc-cccHHhhcCCC----CCCCHHHHHHHHHHccHHHHHHhCCCcccc-cccCCCCCCChh
Q 012523 304 --KDLRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVG 373 (461)
Q Consensus 304 --~~~r~~i~~v~Q~~~--lf-~~ti~~Nl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t-~~~~~g~~lSgG 373 (461)
..+++.++|++|++. ++ ..|+.+|+.+. ...+.+ .....+.+.+..+ |+++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346788999999984 44 35899997421 111111 1111233444443 4542 345667889999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988643 7899999999999875 99999999999998876
Q ss_pred h
Q 012523 451 N 451 (461)
Q Consensus 451 ~ 451 (461)
+
T Consensus 236 ~ 236 (268)
T PRK10419 236 V 236 (268)
T ss_pred h
Confidence 3
No 257
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-43 Score=308.27 Aligned_cols=203 Identities=26% Similarity=0.393 Sum_probs=173.9
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
+++++. |...+.++|+|+||++.+||.++|+||||||||||+|.++.+.+|++|.+++.|++++.++++.+|++|+|+
T Consensus 5 e~kq~~--y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 5 ELKQVG--YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHHH--hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 344553 433455699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccHHhhcCCCC-----CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 314 PQEPTLFRGSVRTNLDPLG-----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 314 ~Q~~~lf~~ti~~Nl~~~~-----~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
.|.|.||.+||.||+-+-. ..+.....+.++++++. ++.+..+..+||||||||++|+|-|.--|
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCC
Confidence 9999999999999996521 22333344445555443 34455677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchh-hhhcCEEEEEeCCEEEEc
Q 012523 389 RILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPT-ITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~-~~~~d~i~vl~~G~i~~~ 448 (461)
+||+||||||+||+.+.+.+.+.+..+. ++..++.|||+.+. ++.+|+++.+..|++-+.
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 9999999999999999999999888865 47899999999987 788999999999998653
No 258
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4e-43 Score=355.12 Aligned_cols=199 Identities=25% Similarity=0.343 Sum_probs=167.2
Q ss_pred eEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC----HHHHhhcceE
Q 012523 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSI 312 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~----~~~~r~~i~~ 312 (461)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 88999953 2 34 999999999999999999999999999999999999999999999986532 2356788999
Q ss_pred EccCCccccc-cHHhhcCCCC-CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG-MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~-~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
++|++.+|+. |++||+.+.. ... ++++.+.++..++.+.. .....+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLL-----------GRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999997532 111 12244555555554433 34457899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 215 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECC
Confidence 9999999999999999999999999988643 6899999999998865 99999999999998876
No 259
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-43 Score=341.02 Aligned_cols=203 Identities=23% Similarity=0.332 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 48999999999633 359999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEccCCcc---ccccHHhhcCCCC--------CC---CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 312 IIPQEPTL---FRGSVRTNLDPLG--------MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 312 ~v~Q~~~l---f~~ti~~Nl~~~~--------~~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
|+||++.+ +..++++|+.+.. .. .++.+.++++..++.+..+ ....+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHH
Confidence 99999865 3457888875321 00 1223455666666654432 2346799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+++.+ +|++++.|.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~ 224 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGP 224 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecC
Confidence 999999999999999999999999999999999998864 47899999999988755 9999777 899998876
No 260
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=5.4e-43 Score=339.04 Aligned_cols=206 Identities=22% Similarity=0.317 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC----CceEEEECCEeCCCCCHHHHh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~----~~G~i~i~g~~i~~~~~~~~r 307 (461)
.++++|++++| + .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 2 3599999999999999999999999999999999999999 999999999988632 2234
Q ss_pred hcceEEccCCc-ccc--ccHHhhcCC-----CCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 308 TKLSIIPQEPT-LFR--GSVRTNLDP-----LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 308 ~~i~~v~Q~~~-lf~--~ti~~Nl~~-----~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
+.++|+||++. .|. .|+.+|+.. .....++++.+.++..++.+. .+.++....+|||||+||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 477777532 111223455666666655331 12345556789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999988643 6899999999999864 99999999999998876
No 261
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3e-43 Score=361.68 Aligned_cols=211 Identities=28% Similarity=0.430 Sum_probs=176.4
Q ss_pred ccEEEEeEEEEeCCC---------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEe--CC
Q 012523 231 GRIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--IC 299 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~---------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~--i~ 299 (461)
.-++++|++++|... ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ .+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 348899999999631 2358999999999999999999999999999999999999999999999987 22
Q ss_pred CCCHHHHhhcceEEccCCccc---cccHHhhcCC----CCCCC----HHHHHHHHHHccHHH-HHHhCCCcccccccCCC
Q 012523 300 SMGLKDLRTKLSIIPQEPTLF---RGSVRTNLDP----LGMYS----DNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEG 367 (461)
Q Consensus 300 ~~~~~~~r~~i~~v~Q~~~lf---~~ti~~Nl~~----~~~~~----~~~~~~~~~~~~l~~-~i~~l~~gl~t~~~~~g 367 (461)
.-+....|+++-+|+|+|+-. ..||.+++.- ..... ++.+.+.++.+++.. +..+.|
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP----------- 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP----------- 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------
Confidence 223445778999999999742 4599999851 11111 233556677777764 455554
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
.+||||||||+||||||+.+|+++|+|||||+||+.+...+.++|+++.+ +.|.++|||+++.++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 67899999999999999999999999999999999999999999998654 7899999999999998 99999999999
Q ss_pred EEEccchh
Q 012523 445 FSFNNVNF 452 (461)
Q Consensus 445 i~~~~~~~ 452 (461)
|||.|+.-
T Consensus 508 iVE~G~~~ 515 (539)
T COG1123 508 IVEEGPTE 515 (539)
T ss_pred EEEeCCHH
Confidence 99999743
No 262
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.2e-43 Score=334.95 Aligned_cols=191 Identities=26% Similarity=0.388 Sum_probs=156.5
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEc-cCCccc-cccH
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLF-RGSV 324 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~ti 324 (461)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4599999999999999999999999999999999999999999999999987543 345678899998 566676 4599
Q ss_pred HhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 325 RTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 325 ~~Nl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
+||+.+.. ....++ +.++++..++.+. .......||||||||++||||++.+|++|||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-----------LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99985421 122222 2233333333322 22334679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 398 ASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998643 6899999999998765 9999999999998765
No 263
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.4e-42 Score=335.85 Aligned_cols=208 Identities=21% Similarity=0.255 Sum_probs=170.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC--CCCCceEEEECCEeCCCCCHHHHhh-
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDLRT- 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl--~~~~~G~i~i~g~~i~~~~~~~~r~- 308 (461)
.++++|+++.|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999963 3599999999999999999999999999999999998 6899999999999998877665554
Q ss_pred cceEEccCCccccc-cHHhhcCCCCC----------CCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCC-CCCh
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPLGM----------YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGE-NWSV 372 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~~~----------~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~-~lSg 372 (461)
.++|++|++.+|++ |+.+|+.+... ... +++.++++..++.+ +....... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999998876 78888753210 011 12233344444321 12233333 5999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh--cCEEEEEeCCEEEEcc
Q 012523 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD--SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 373 Gq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~vl~~G~i~~~~ 449 (461)
||+||++||||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998864 47899999999998875 8999999999999988
Q ss_pred ch
Q 012523 450 VN 451 (461)
Q Consensus 450 ~~ 451 (461)
.+
T Consensus 235 ~~ 236 (252)
T CHL00131 235 DA 236 (252)
T ss_pred Ch
Confidence 64
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.5e-42 Score=324.38 Aligned_cols=194 Identities=27% Similarity=0.352 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 35899999999999999999999999999999999999999999999999886543 467889999
Q ss_pred EccCCccc-cccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 313 IPQEPTLF-RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 313 v~Q~~~lf-~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
++|++.++ ..|++||+.+.. ...++++.++++..++.++.+. ...+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 569999997543 2345667777788877654332 2367999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhh-hhcCEEEEE
Q 012523 391 LILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVL 440 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~d~i~vl 440 (461)
+||||||++||+.+.+.+.+.|++.. +++|+|++||+...+ ..||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998754 478999999987654 558999876
No 265
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-42 Score=326.06 Aligned_cols=194 Identities=25% Similarity=0.377 Sum_probs=166.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999963 35999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EccCCcccc-ccHHhhcCCCCC----CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 313 IPQEPTLFR-GSVRTNLDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
++|++.+++ .|++||+.+... ..++++.++++..++.++.+. ....||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 599999964321 234556677777777655433 2467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhc-CEEEEE
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDS-DMVMVL 440 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~-d~i~vl 440 (461)
|++++|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998863 478999999999999775 777776
No 266
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.4e-42 Score=312.29 Aligned_cols=159 Identities=33% Similarity=0.534 Sum_probs=146.9
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH-HHhhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~-~~r~~i~ 311 (461)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 478999999964 3599999999999999999999999999999999999999999999999999887754 4577899
Q ss_pred EEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
|++| |||||+||++||||++++|+++
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 392 ILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
+|||||++||+.+.+.+.+.+++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998864 47899999999998765 99999999999975
No 267
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2e-42 Score=334.17 Aligned_cols=194 Identities=25% Similarity=0.390 Sum_probs=167.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999963 3599999999999999999999999999999999999999999999987 24699
Q ss_pred EEccCCcccc---ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 312 IIPQEPTLFR---GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 312 ~v~Q~~~lf~---~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
|+||++.++. .|+.+|+.......++++.++++..++.+.++.. ...||||||||++||||++.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998764 3788887543334456777888888887665443 3679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 389 RILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++ ++++.|.
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~ 203 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGT 203 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCC
Confidence 99999999999999999999999987643 7899999999999865 999999965 7888776
No 268
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.6e-42 Score=335.56 Aligned_cols=211 Identities=22% Similarity=0.362 Sum_probs=170.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEe-----CCCCCHHH-
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKD- 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~-----i~~~~~~~- 305 (461)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999963 348999999999999999999999999999999999999999999999987 66666543
Q ss_pred ---HhhcceEEccCCcc--c-cccHHhhcCC----CCCCCHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhH
Q 012523 306 ---LRTKLSIIPQEPTL--F-RGSVRTNLDP----LGMYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQ 374 (461)
Q Consensus 306 ---~r~~i~~v~Q~~~l--f-~~ti~~Nl~~----~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq 374 (461)
+++.++|++|++.. + ..|+.+|+.. .......+. ...+.++++.++ ++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHHH
Confidence 24579999999852 2 3477888742 110011111 112334555542 33 34566678999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||++||||++.+|++|||||||++||+.+.+.+.+.+++.. .+.|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998853 37899999999999875 999999999999988764
No 269
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.5e-42 Score=332.13 Aligned_cols=221 Identities=20% Similarity=0.275 Sum_probs=167.4
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC--CCCceEEEECCEeCCCCCHHHHh-hc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDLR-TK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~--~~~~G~i~i~g~~i~~~~~~~~r-~~ 309 (461)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...++...+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999963 35999999999999999999999999999999999994 79999999999998877766554 56
Q ss_pred ceEEccCCccccc-cHHhhcCCC-C---CCCHHHHHHHHH-HccHHHHHH--hCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPL-G---MYSDNEIWEAME-KCQLKATIS--RLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~-~---~~~~~~~~~~~~-~~~l~~~i~--~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
++|++|++.++.. |..+++... . .....+..+..+ ...+.+.++ .+|+++.+... ...||||||||++||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHHH
Confidence 9999999987754 444433210 0 000000000000 001112222 23333222211 136999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh--cCEEEEEeCCEEEEccchhhHHHh
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD--SDMVMVLSYGSFSFNNVNFCVQRI 457 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~--~d~i~vl~~G~i~~~~~~~~~~~~ 457 (461)
||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|..-+++.+
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 236 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQL 236 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999999987644 6899999999999886 899999999999998876555443
No 270
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.4e-42 Score=366.14 Aligned_cols=207 Identities=27% Similarity=0.408 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHh-hcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r-~~i 310 (461)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999963 3599999999999999999999999999999999999999999999999999877766554 469
Q ss_pred eEEccCCccccc-cHHhhcCCCCCCC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGMYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
+|++|++.+|.. |++||+.+..... ++++.++++..++. ........+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998875 9999997542211 22344444444442 22334457899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKT 224 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCh
Confidence 999999999999999999999999998864 47899999999998865 999999999999988763
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=366.93 Aligned_cols=210 Identities=27% Similarity=0.403 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC--CceEEEECCEeCCCCCHHH-Hhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~--~~G~i~i~g~~i~~~~~~~-~r~ 308 (461)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999953 3599999999999999999999999999999999999996 8999999999998766554 457
Q ss_pred cceEEccCCccccc-cHHhhcCCCCC------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
.++||||++.+|.. |++||+.+... .+.++..+ .+.++++.+ |++........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988865 99999975321 12111111 122333333 333334455678999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||+.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 99999999999999999999999999999998863 47899999999998875 99999999999998765
No 272
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=366.40 Aligned_cols=210 Identities=24% Similarity=0.361 Sum_probs=172.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH-Hhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~-~r~~i 310 (461)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999953 35999999999999999999999999999999999999999999999999987655444 35679
Q ss_pred eEEccCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+|++|++.+|.. |++||+.+... .+.++.++ .+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 99999975321 11111111 122233332 2333334455789999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999998863 47899999999998875 99999999999998765
No 273
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.5e-42 Score=332.15 Aligned_cols=200 Identities=24% Similarity=0.314 Sum_probs=166.6
Q ss_pred EEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 234 ~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 46777774 179999999999999999999999999999999999965 99999999999888887888889999
Q ss_pred ccCCccc-cccHHhhcCCCCC--CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 314 PQEPTLF-RGSVRTNLDPLGM--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 314 ~Q~~~lf-~~ti~~Nl~~~~~--~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
||++.++ ..|+++|+.+... .. .+++.++++..++.+ ........||||||||++||||++.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-----------KLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9998654 6799999975421 11 123344445444433 2334457899999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 387 -------RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 387 -------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 217 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRR 217 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 679999999999999999999999998864 4789999999999765 5999999999999988763
No 274
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.3e-42 Score=329.80 Aligned_cols=185 Identities=26% Similarity=0.382 Sum_probs=155.9
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcccc-ccHHhhc
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNL 328 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Nl 328 (461)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 012523 329 DPL-----GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (461)
Q Consensus 329 ~~~-----~~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~ 399 (461)
.+. ...+++ ++.+.++..++.+.. .....+||||||||++||||++.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-----------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 112222 234455555554433 334467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 400 IDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 198 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQ 198 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccC
Confidence 99999999999998853 37899999999998765 99999999999998775
No 275
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.6e-42 Score=322.52 Aligned_cols=193 Identities=21% Similarity=0.288 Sum_probs=161.0
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999963 359999999999999999999999999999999999999999999999998865 34567889999
Q ss_pred EccCCcccc-ccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
++|++.++. .|+++|+.+.. ...+.++.++++..++.+. ......+|||||+||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998874 69999987532 1122234444444444322 222335799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhhcCEEEE
Q 012523 390 ILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~~d~i~v 439 (461)
+|||||||++||+.+.+.+.+.|++. ..++|+|++||+.+.+..||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999999999985 347899999999999999987543
No 276
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-42 Score=333.51 Aligned_cols=208 Identities=27% Similarity=0.464 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-C----CceEEEECCEeCCCCCHHH
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-P----ENGRILIDGLDICSMGLKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-~----~~G~i~i~g~~i~~~~~~~ 305 (461)
++++|++..|.... ..+++|+||++++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.|+-.++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999996432 358999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----hcceEEccCCcc-cc--ccHHhhc----CCCCCC-C----HHHHHHHHHHccHHH---HHHhCCCcccccccCC
Q 012523 306 LR----TKLSIIPQEPTL-FR--GSVRTNL----DPLGMY-S----DNEIWEAMEKCQLKA---TISRLPMLLDSSVSDE 366 (461)
Q Consensus 306 ~r----~~i~~v~Q~~~l-f~--~ti~~Nl----~~~~~~-~----~~~~~~~~~~~~l~~---~i~~l~~gl~t~~~~~ 366 (461)
+| +.|++|||+|.- ++ -||.+-+ ...... + .++..+.++.+++.+ .++..|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 43 469999999863 22 2454433 221111 1 234667778888754 445555
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCC
Q 012523 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (461)
Q Consensus 367 g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G 443 (461)
.+||||||||+.||-|++.+|++||.||||+|||..++.+|++.|++.. .+.|+|+||||+..+.. ||||+||..|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 5789999999999999999999999999999999999999999999865 48899999999998876 9999999999
Q ss_pred EEEEccch
Q 012523 444 SFSFNNVN 451 (461)
Q Consensus 444 ~i~~~~~~ 451 (461)
+|||.|..
T Consensus 231 ~iVE~g~~ 238 (316)
T COG0444 231 RIVEEGPV 238 (316)
T ss_pred EEEEeCCH
Confidence 99999984
No 277
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-43 Score=324.08 Aligned_cols=216 Identities=25% Similarity=0.400 Sum_probs=177.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~~i~ 311 (461)
++.++++++|++ -.+++|+||++++||+++|+|||||||||++|++.|+|+|++|+|.++|.|+..+++... |.-|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 678999999964 349999999999999999999999999999999999999999999999999999998764 45588
Q ss_pred EEccCCccccc-cHHhhcCCCCC------------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM------------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~------------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
--+|.+.+|++ |+.||+..... ....+..++.++| .+.++.+ |++....+...+||+||++|+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~v--gL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFV--GLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHc--CCchhhcchhhcCChhHhHHH
Confidence 89999999976 99999853210 1100111122221 1222222 344445566688999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchhhH
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNFCV 454 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~~~ 454 (461)
.|||||+.+|++|+||||.+||.+.....+.+.+++..+ +.|+++|-||+..+.. ||||+||+.|+++++|..-.+
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 999999999999999999999999999999999999764 4899999999998876 999999999999999884433
No 278
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=366.63 Aligned_cols=210 Identities=23% Similarity=0.344 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~~i 310 (461)
.++++|++++|++ ..+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999953 359999999999999999999999999999999999999999999999999987776543 4579
Q ss_pred eEEccCCccccc-cHHhhcCCCCC-----C-----CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGM-----Y-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~-----~-----~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
+||+|++.+|.. |++||+.+... . +.++..+ .+.+.++.+ |+.........+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 99999964311 0 1111111 122233332 2333334455789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||||+.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 9999999999999999999999999999999998864 47899999999999875 99999999999988765
No 279
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.5e-42 Score=323.15 Aligned_cols=195 Identities=23% Similarity=0.257 Sum_probs=163.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999963 3499999999999999999999999999999999999999999999999988652 3456799
Q ss_pred EEccCCccccc-cHHhhcCCCC---CC-CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~-~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
|++|++.+|.. |++||+.+.. .. .++...+.++..++.+. .......||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998876 9999986421 11 12333445555544332 223346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhh-cCEEEEEeC
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITD-SDMVMVLSY 442 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~-~d~i~vl~~ 442 (461)
+|++++|||||++||+++.+.+.+.+++. .+++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999875 347899999999998875 999999874
No 280
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=370.86 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCC---------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC
Q 012523 232 RIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (461)
Q Consensus 232 ~i~~~~v~~~y~~~---------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~ 302 (461)
-++++|+++.|+.. ...+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 135899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhhcceEEccCCc--ccc-ccHHhhcCCC----CCCCH----HHHHHHHHHccHH-HHHHhCCCcccccccCCC
Q 012523 303 LK---DLRTKLSIIPQEPT--LFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLK-ATISRLPMLLDSSVSDEG 367 (461)
Q Consensus 303 ~~---~~r~~i~~v~Q~~~--lf~-~ti~~Nl~~~----~~~~~----~~~~~~~~~~~l~-~~i~~l~~gl~t~~~~~g 367 (461)
.. .+|++|+||||++. +++ .|+.+|+.+. ..... +++.+.++.+++. +..+ ...
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RYP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CCc
Confidence 43 35678999999983 665 4999998531 11111 2344555555553 3333 334
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 67999999999999999999999999999999999999999999988642 7899999999998876 99999999999
Q ss_pred EEEccch
Q 012523 445 FSFNNVN 451 (461)
Q Consensus 445 i~~~~~~ 451 (461)
|++.|..
T Consensus 542 iv~~g~~ 548 (623)
T PRK10261 542 IVEIGPR 548 (623)
T ss_pred EEEecCH
Confidence 9998863
No 281
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=362.90 Aligned_cols=210 Identities=24% Similarity=0.355 Sum_probs=172.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH-HHHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~-~~~r~~i 310 (461)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999963 359999999999999999999999999999999999999999999999999875543 3467789
Q ss_pred eEEccCCccccc-cHHhhcCCCCC------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
+|+||++.+|.. |+++|+.+... ....+..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999998875 99999975311 11111111 122333333 23333344567899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.+.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999999999998864 47899999999998865 99999999999987554
No 282
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-41 Score=319.33 Aligned_cols=193 Identities=28% Similarity=0.349 Sum_probs=164.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|+++.|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . .+++.++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999964 359999999999999999999999999999999999999999999999998752 2 27888999
Q ss_pred EccCCccc-cccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 313 IPQEPTLF-RGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 313 v~Q~~~lf-~~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
++|++.++ ..|+++|+.+.. ...++++.++++..++.+..+. ...+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----------PFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988776 569999986421 2234556777777777654322 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhhcCEEEEEeC
Q 012523 389 RILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
+++||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999875 357899999999999988 99988854
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.5e-42 Score=360.28 Aligned_cols=204 Identities=19% Similarity=0.204 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 899999999963 349999999999999999999999999999999999999999999999988876676677788999
Q ss_pred EccCCcc--c-------cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 313 IPQEPTL--F-------RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 313 v~Q~~~l--f-------~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
++|++.+ + ..|+++|+.... ..++++.++++..++.+..+. ...+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHHHH
Confidence 9998753 2 347888875321 123455666777766554433 346799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|.
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999998864 36899999999998876 99999999999998876
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=9.2e-42 Score=318.27 Aligned_cols=192 Identities=23% Similarity=0.344 Sum_probs=160.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|+++.|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 478999999963 35999999999999999999999999999999999999999999999999987664 456788999
Q ss_pred EccCCcccc-ccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
++|++.+|+ .|+++|+.+.. ...++++.++++..++.++.+. ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999996431 1123346677777777665433 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhhcCEEEE
Q 012523 389 RILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~~d~i~v 439 (461)
++++|||||++||+.+.+.+.+.++++ .++.|+|++||+...+. |++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 999999999999999999999999885 35789999999985432 466543
No 285
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.4e-42 Score=298.19 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---H
Q 012523 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~ 306 (461)
-|+++++++.-+.. .-.+|++++|.|++||.+|||||||||||||+-+++|+-+|++|+|++.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888877543 235899999999999999999999999999999999999999999999999999988653 4
Q ss_pred h-hcceEEccCCcccc-ccHHhhcCCC----CCCC-H--HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 307 R-TKLSIIPQEPTLFR-GSVRTNLDPL----GMYS-D--NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 307 r-~~i~~v~Q~~~lf~-~ti~~Nl~~~----~~~~-~--~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
| +++|+|+|..+|.+ .|-.||...- ++.. + +...+.++.+|+.+-+...| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 66999999999874 5999998631 2111 1 22445666777666555555 6799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEEEc
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~ 448 (461)
+|||||+...|++|+-||||-+||.+|..+|.+++..+. .+.|.++|||++.....|||++.|.+|+++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998753 47899999999999999999999999999864
No 286
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=358.61 Aligned_cols=208 Identities=23% Similarity=0.341 Sum_probs=171.4
Q ss_pred EEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH-HHhhcceEE
Q 012523 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKLSII 313 (461)
Q Consensus 235 ~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~-~~r~~i~~v 313 (461)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999953 3599999999999999999999999999999999999999999999999998765543 456789999
Q ss_pred ccCCcccc-ccHHhhcCCCCC------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 314 PQEPTLFR-GSVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 314 ~Q~~~lf~-~ti~~Nl~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
||++.+|. .|+++|+.+... .+.++..+ .+.+.++.+ |++........+||||||||++||||++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998775 499999975321 12222111 123334443 34444455678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 999999999999999999999999998864 47899999999998865 999999999999988763
No 287
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.3e-41 Score=358.28 Aligned_cols=209 Identities=27% Similarity=0.395 Sum_probs=170.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC--CceEEEECCEeCCCCCHHH-Hhhc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~--~~G~i~i~g~~i~~~~~~~-~r~~ 309 (461)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999953 3599999999999999999999999999999999999987 7999999999998776544 4567
Q ss_pred ceEEccCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHccHHHHHHhCCCcccccc-cCCCCCCChhHHHHHHH
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQLFCL 380 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~-~~~g~~lSgGq~Qrl~l 380 (461)
++||||++.+|.. |++||+.+... ...++..+ .+.+.++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988865 99999965321 11111111 122333333 222221 22356899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKD 224 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecC
Confidence 999999999999999999999999999999998853 47899999999998876 99999999999987765
No 288
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-41 Score=321.81 Aligned_cols=198 Identities=26% Similarity=0.381 Sum_probs=159.2
Q ss_pred EEEEeEEEEeCC----C-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEEC--CE--eCCCCCH
Q 012523 233 IELEDLKVRYRP----N-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID--GL--DICSMGL 303 (461)
Q Consensus 233 i~~~~v~~~y~~----~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~--g~--~i~~~~~ 303 (461)
|+++|++++|+. + ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2359999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-hhcceEEccCCccccc-cHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCC
Q 012523 304 KD---L-RTKLSIIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (461)
Q Consensus 304 ~~---~-r~~i~~v~Q~~~lf~~-ti~~Nl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lS 371 (461)
.. + ++.++|++|++.+|.. |++||+.+. ..... +++.++++..++.+.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 43 3 4579999999988865 999998631 11221 2233344444433211 123467899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEE
Q 012523 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVL 440 (461)
Q Consensus 372 gGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl 440 (461)
||||||++||||++++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 3789999999999886 59999876
No 289
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-41 Score=322.52 Aligned_cols=208 Identities=27% Similarity=0.379 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCCCC----------------------CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce
Q 012523 232 RIELEDLKVRYRPNT----------------------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~----------------------~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G 289 (461)
.|+++||++-|+.+. ..-++|+||+|+.||+..|.|=||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 478888887775321 1247899999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHh----hcceEEccCCccccc-cHHhhcCCCCC---CC----HHHHHHHHHHccHHHHHHhCCC
Q 012523 290 RILIDGLDICSMGLKDLR----TKLSIIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPM 357 (461)
Q Consensus 290 ~i~i~g~~i~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~~Nl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~ 357 (461)
+|+++|.|+..++.+++| +++++|+|..-|++- ||.||..++-+ .. ++...++++.+||+.|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988764 569999999999865 99999987532 22 234567889999999988887
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhh-hhc
Q 012523 358 LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTI-TDS 434 (461)
Q Consensus 358 gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~ 434 (461)
.+||||++||+.|||||..+|+||+||||+|+|||--+..+++-|.++. -+||+++|||+++.. +..
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4689999999999999999999999999999999988888888877643 379999999999865 559
Q ss_pred CEEEEEeCCEEEEccc
Q 012523 435 DMVMVLSYGSFSFNNV 450 (461)
Q Consensus 435 d~i~vl~~G~i~~~~~ 450 (461)
|||..|++|+|+..|-
T Consensus 233 ~rIaimkdG~ivQ~Gt 248 (386)
T COG4175 233 DRIAIMKDGEIVQVGT 248 (386)
T ss_pred ceEEEecCCeEEEeCC
Confidence 9999999999998875
No 290
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-41 Score=348.84 Aligned_cols=213 Identities=24% Similarity=0.408 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCCCC--ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC----ceEEEECCEeCCCCCHHH
Q 012523 232 RIELEDLKVRYRPNTP--LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE----NGRILIDGLDICSMGLKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~--~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~----~G~i~i~g~~i~~~~~~~ 305 (461)
-++++|++..|..... .+++|+||+|++||++||||+|||||||+.+.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999964432 4899999999999999999999999999999999999998 899999999999888765
Q ss_pred Hh----hcceEEccCCc-cccc--cHHhhcC----CCCCCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCC
Q 012523 306 LR----TKLSIIPQEPT-LFRG--SVRTNLD----PLGMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 370 (461)
Q Consensus 306 ~r----~~i~~v~Q~~~-lf~~--ti~~Nl~----~~~~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~l 370 (461)
.| +.|+||||+|. .++- ||.+-+. .....+ .++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 56999999996 3432 6655442 122121 2345566677776543333 2234679
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 371 SgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
|||||||+.||+||+.+|++||+||||++||+.++++|+++|++.. .+.++|+|||++..+.. ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 48899999999999987 99999999999999
Q ss_pred ccchhh
Q 012523 448 NNVNFC 453 (461)
Q Consensus 448 ~~~~~~ 453 (461)
.|.+-.
T Consensus 236 ~G~~~~ 241 (539)
T COG1123 236 TGPTEE 241 (539)
T ss_pred ecCHHH
Confidence 998543
No 291
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.3e-41 Score=324.65 Aligned_cols=192 Identities=25% Similarity=0.359 Sum_probs=156.7
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC----CceEEEECCEeCCCCCHHHHhhcceEEccCCc-cc-c-
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LF-R- 321 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~----~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 321 (461)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|++|++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 222468999999995 34 3
Q ss_pred ccHHhhcCCC----CCCC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEe
Q 012523 322 GSVRTNLDPL----GMYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394 (461)
Q Consensus 322 ~ti~~Nl~~~----~~~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLD 394 (461)
.|+.+|+.+. .... ++++.+.++..++.+ + ++.......+||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4888887421 1111 123445555555431 0 12334556789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 395 EATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 395 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 209 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT 209 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999998643 7899999999999865 99999999999998876
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.8e-41 Score=358.70 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=171.3
Q ss_pred cEEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCCCHH
Q 012523 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~~~~ 304 (461)
.++++|++++|++. ...+|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 24599999999999999999999999999999999999997 799999999999877654
Q ss_pred H---Hh-hcceEEccCCc--ccc-ccHHhhcCCC----CCCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCC
Q 012523 305 D---LR-TKLSIIPQEPT--LFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (461)
Q Consensus 305 ~---~r-~~i~~v~Q~~~--lf~-~ti~~Nl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~ 369 (461)
+ +| +.++|+||++. ++. .|+++|+.+. ...+. +++.++++..++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3 33 57999999985 444 4888887521 11121 3344555555553211 012334578
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 370 lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998853 37899999999998875 9999999999999
Q ss_pred Eccch
Q 012523 447 FNNVN 451 (461)
Q Consensus 447 ~~~~~ 451 (461)
+.|..
T Consensus 237 ~~g~~ 241 (529)
T PRK15134 237 EQNRA 241 (529)
T ss_pred EeCCH
Confidence 87753
No 293
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-41 Score=303.18 Aligned_cols=206 Identities=25% Similarity=0.380 Sum_probs=179.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+.+|+|++-.+ +.+|+++||+++|||.+||+||||||||||+|.|+|...|++|++.++|.+++.+++.++-++-++
T Consensus 2 i~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 788999988743 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcc-ccccHHhhcCCCC-------CCCHHH--HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 313 IPQEPTL-FRGSVRTNLDPLG-------MYSDNE--IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 313 v~Q~~~l-f~~ti~~Nl~~~~-------~~~~~~--~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+||+..+ |+-|++|-+.++. +..+++ ..+++..+++..+-.+. -..|||||+||+.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999887 8999999987642 112333 46788888887665432 3579999999999999
Q ss_pred Hhhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 383 VLLK------RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 383 al~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
.|.. ++++|+||||||+||...+..++++.++.. ++..|+.|=||++... +||||++|.+|+++..|..
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 9987 346999999999999999999999999864 4789999999999765 5999999999999999974
No 294
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2e-41 Score=313.85 Aligned_cols=173 Identities=29% Similarity=0.443 Sum_probs=144.7
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC--CCHHHHhhcceEEccCC--ccccc
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKLSIIPQEP--TLFRG 322 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~--~lf~~ 322 (461)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 359999999999999999999999999999999999999999999999999852 22346678899999998 47778
Q ss_pred cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 012523 323 SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (461)
Q Consensus 323 ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDE 395 (461)
|++||+.+.. ..++ +++.++++..++.+..+. ...+||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999997521 1222 234555666666554433 346799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh
Q 012523 396 ATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT 430 (461)
Q Consensus 396 pts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~ 430 (461)
||++||+.+.+.+.+.|++.. +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998864 47899999999864
No 295
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=357.26 Aligned_cols=215 Identities=22% Similarity=0.357 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH-HHHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~-~~~r~~i 310 (461)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998762 28999999999999999999999999999999999999999999999999866544 3567789
Q ss_pred eEEccCC---ccccc-cHHhhcCCCCCC------------CHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChh
Q 012523 311 SIIPQEP---TLFRG-SVRTNLDPLGMY------------SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVG 373 (461)
Q Consensus 311 ~~v~Q~~---~lf~~-ti~~Nl~~~~~~------------~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgG 373 (461)
+|+||++ .+|+. |+++|+.+.... ...+ ....+.+.++.+ |+. ........+||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL--ALKCHSVNQNITELSGG 413 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc--CCCCCCccCccccCChH
Confidence 9999984 46654 999998753210 1111 011123344443 332 2334555789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc-
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV- 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~- 450 (461)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.+.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999998853 47899999999998765 99999999999987653
Q ss_pred --hhhHHHh
Q 012523 451 --NFCVQRI 457 (461)
Q Consensus 451 --~~~~~~~ 457 (461)
..|+..+
T Consensus 494 ~~~~~~~~~ 502 (510)
T PRK09700 494 RDDMSEEEI 502 (510)
T ss_pred cccCCHHHH
Confidence 3455544
No 296
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-41 Score=341.36 Aligned_cols=210 Identities=26% Similarity=0.359 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHh-hcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r-~~i 310 (461)
-++++|++++|++- .+|+|+||++++||++|++|+||||||||+|+|+|.|+|++|+|.+||++..-.++.+-+ .-|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48999999999753 499999999999999999999999999999999999999999999999999887877654 459
Q ss_pred eEEccCCccccc-cHHhhcCCCCCC-------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGMY-------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+.|+||..|++. ||.|||.++... +..++.+.+ ...++.+... ........+||.||||.++|||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~lg~~--~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARLGLD--IDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHcCCC--CChhhhhhhCCHHHHHHHHHHH
Confidence 999999999965 999999655432 223332222 1223333211 1133444579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|+..+++++|||||||+|+....+.+.+.+++++ ++.++|+||||++.+.. ||||.||.+|+.+....
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999899999999865 58999999999998876 99999999999997665
No 297
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4e-41 Score=358.49 Aligned_cols=209 Identities=26% Similarity=0.418 Sum_probs=170.9
Q ss_pred cEEEEeEEEEeCC---------CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC
Q 012523 232 RIELEDLKVRYRP---------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (461)
Q Consensus 232 ~i~~~~v~~~y~~---------~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~ 302 (461)
.++++|+++.|+. +...+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 4899999999952 12459999999999999999999999999999999999995 8999999999987765
Q ss_pred HHH---HhhcceEEccCCc--ccc-ccHHhhcCCCC-----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCC
Q 012523 303 LKD---LRTKLSIIPQEPT--LFR-GSVRTNLDPLG-----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEG 367 (461)
Q Consensus 303 ~~~---~r~~i~~v~Q~~~--lf~-~ti~~Nl~~~~-----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g 367 (461)
... +|++++|+||++. +|+ .|++||+.+.. ..+. +++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 433 4678999999983 665 49999996421 0111 22334444444421 1123345
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 7899999999999999999999999999999999999999999999864 27899999999998875 99999999999
Q ss_pred EEEccch
Q 012523 445 FSFNNVN 451 (461)
Q Consensus 445 i~~~~~~ 451 (461)
+++.|..
T Consensus 504 i~~~~~~ 510 (529)
T PRK15134 504 VVEQGDC 510 (529)
T ss_pred EEEEcCH
Confidence 9998863
No 298
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-41 Score=362.97 Aligned_cols=212 Identities=23% Similarity=0.329 Sum_probs=170.3
Q ss_pred cEEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC----------
Q 012523 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC---------- 299 (461)
Q Consensus 232 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~---------- 299 (461)
.|+++|++++|+.. ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 235999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-hcceEEccCC--cccc-ccHHhhcCCC----CCCCH----HHHHHHHHHccHHHHHHhCCCccccccc
Q 012523 300 SMGLK---DLR-TKLSIIPQEP--TLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVS 364 (461)
Q Consensus 300 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~~Nl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~ 364 (461)
+.+.. .+| +.||||+|+| .+++ .|+.+|+.+. ...+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 233 4799999998 5665 4999999642 11222 233444555444210 11233
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CcEEEEEccCchhhhh-cCEEEEEe
Q 012523 365 DEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-P-GSTVITIAHRVPTITD-SDMVMVLS 441 (461)
Q Consensus 365 ~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~vl~ 441 (461)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. + ++|+|+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4457899999999999999999999999999999999999999999999864 3 7899999999998865 99999999
Q ss_pred CCEEEEccch
Q 012523 442 YGSFSFNNVN 451 (461)
Q Consensus 442 ~G~i~~~~~~ 451 (461)
+|++++.|..
T Consensus 244 ~G~i~~~g~~ 253 (623)
T PRK10261 244 QGEAVETGSV 253 (623)
T ss_pred CCeecccCCH
Confidence 9999987763
No 299
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=324.97 Aligned_cols=210 Identities=31% Similarity=0.505 Sum_probs=177.9
Q ss_pred cccEEEEeEEEEeCCC---------CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC
Q 012523 230 HGRIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~---------~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~ 300 (461)
+.-++.+||...|+-. ...+.+++||++++||.+||||+||||||||-..|+|+.++. |+|.++|.++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 3458999999988532 124799999999999999999999999999999999999886 999999999998
Q ss_pred CCHHH---HhhcceEEccCCc--cc-cccHHhhcC----CCC-CCC----HHHHHHHHHHccHHH-HHHhCCCccccccc
Q 012523 301 MGLKD---LRTKLSIIPQEPT--LF-RGSVRTNLD----PLG-MYS----DNEIWEAMEKCQLKA-TISRLPMLLDSSVS 364 (461)
Q Consensus 301 ~~~~~---~r~~i~~v~Q~~~--lf-~~ti~~Nl~----~~~-~~~----~~~~~~~~~~~~l~~-~i~~l~~gl~t~~~ 364 (461)
++.++ +|+++-+|+|||+ |- ..||.+-|. ... ..+ ++++.+|++.+|++. ...+.|
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-------- 424 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP-------- 424 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC--------
Confidence 88765 6789999999997 22 347766653 111 222 456778899999875 344555
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCcEEEEEccCchhhhh-cCEEEEEe
Q 012523 365 DEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREE--FPGSTVITIAHRVPTITD-SDMVMVLS 441 (461)
Q Consensus 365 ~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~~-~d~i~vl~ 441 (461)
..+|||||||||||||+.-+|++++||||||+||...+..+.++|+++ +.+-+-++|||++..++. ||+|+||.
T Consensus 425 ---hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 425 ---HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred ---cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 568999999999999999999999999999999999999999999885 347899999999999997 99999999
Q ss_pred CCEEEEccch
Q 012523 442 YGSFSFNNVN 451 (461)
Q Consensus 442 ~G~i~~~~~~ 451 (461)
+|+|||+|++
T Consensus 502 ~GkiVE~G~~ 511 (534)
T COG4172 502 DGKIVEQGPT 511 (534)
T ss_pred CCEEeeeCCH
Confidence 9999999993
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-41 Score=355.55 Aligned_cols=212 Identities=24% Similarity=0.372 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCC-CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-CCceEEEECCEeCCCCCH-HHHhh
Q 012523 232 RIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGL-KDLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~-~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-~~~G~i~i~g~~i~~~~~-~~~r~ 308 (461)
.|+++|+++.|+. ++..+++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4999999999953 23359999999999999999999999999999999999999 599999999999865543 34567
Q ss_pred cceEEccCC---cccc-ccHHhhcCCCC--CC------CHHHHHHHHHHccHHHHHHhCCCcccc-cccCCCCCCChhHH
Q 012523 309 KLSIIPQEP---TLFR-GSVRTNLDPLG--MY------SDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQR 375 (461)
Q Consensus 309 ~i~~v~Q~~---~lf~-~ti~~Nl~~~~--~~------~~~~~~~~~~~~~l~~~i~~l~~gl~t-~~~~~g~~lSgGq~ 375 (461)
.++|++|++ .+|. .|+.||+.+.. .. +.++ ....+.+.++.+ |++. .......+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3554 59999996421 11 1111 111233444443 2321 23455678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||++||||++.+|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|+++..|.
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999998753 47899999999998875 99999999999987654
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.7e-41 Score=356.19 Aligned_cols=214 Identities=24% Similarity=0.363 Sum_probs=169.6
Q ss_pred cEEEEeEEEEeCC---CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEEC-CEe---CCCCC--
Q 012523 232 RIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID-GLD---ICSMG-- 302 (461)
Q Consensus 232 ~i~~~~v~~~y~~---~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~-g~~---i~~~~-- 302 (461)
.++++|++++|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 22459999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhhcceEEccCCccccc-cHHhhcCCC-C-CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 303 -LKDLRTKLSIIPQEPTLFRG-SVRTNLDPL-G-MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 303 -~~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~-~-~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
...+|++++|+||++.+|+. |+.+|+.+. . .... +++.++++..++.+. ..+........+|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 23456789999999988864 999999631 1 1111 123334444443210 00012234457899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++.|..
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998864 27899999999998875 999999999999988863
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-41 Score=317.64 Aligned_cols=180 Identities=27% Similarity=0.451 Sum_probs=158.7
Q ss_pred cEEEEeEEEEeCCCC-------CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH
Q 012523 232 RIELEDLKVRYRPNT-------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~-------~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~ 304 (461)
-++++|+++.|+... ..+++||||+|++||++||||+|||||||+.++|+|+++|++|+|.++|.++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 388999999996432 25899999999999999999999999999999999999999999999999977655
Q ss_pred HHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~-~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
.....+++.+.++.+|+.. +..+.| .+|||||+||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 1122456788888888754 666666 5689999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+|+++++|||||+||...+.++.+++.+.. .+.|.++|||+++.+++ ||||.||..|+|||.|..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~ 194 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPT 194 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCH
Confidence 999999999999999999999999999998854 37899999999999998 999999999999999974
No 303
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1e-40 Score=317.13 Aligned_cols=193 Identities=25% Similarity=0.325 Sum_probs=153.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 678888988854 4599999999999999999999999999999999999999999999999876321 11111
Q ss_pred EccCCccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 313 IPQEPTLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
.....|++||+.+.. ..+.+ ++.++++..++.+. ......+||||||||++||||++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-----------IDLPVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHHHh
Confidence 123469999986421 11222 22333444333322 22334679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998864 36899999999998865 9999999999998765
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-40 Score=310.53 Aligned_cols=188 Identities=18% Similarity=0.337 Sum_probs=157.4
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ +.++ ++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999953 3355 599999999999999999999999999999999999999999999886532 346999
Q ss_pred EccCCcc-ccccHHhhcCCCCC--CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 313 IPQEPTL-FRGSVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 313 v~Q~~~l-f~~ti~~Nl~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
++|++.+ +..|+++|+.+... ..++++.++++..++.+..+ ..+.+||||||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 56799999975321 13445566667766654433 3457899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhhcCEEE
Q 012523 390 ILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITDSDMVM 438 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~~d~i~ 438 (461)
+++|||||++||+.+.+.+.+.+++. .+++|+|++||+++.++.+|-+.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999753 45799999999999999998763
No 305
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.7e-40 Score=385.89 Aligned_cols=214 Identities=22% Similarity=0.356 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
..|+++|+++.|+++++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996434569999999999999999999999999999999999999999999999999865 456778899
Q ss_pred eEEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
||+||++.+|+. |++||+.+.. .... +++.+.++..++.+ .......+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-----------KRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHH
Confidence 999999999865 9999997531 1222 23444555554433 334455789999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchhhHHH
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNFCVQR 456 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~~~~~ 456 (461)
||+.+|++++|||||++||+.+++.+.+.|++..+++|+|++||+++.++. ||||++|++|+++..|.....|+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999998778999999999999875 99999999999999988665553
No 306
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=359.54 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=177.5
Q ss_pred cEEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH---
Q 012523 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL--- 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~--- 306 (461)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2459999999999999999999999999999999999999999999999999998876654
Q ss_pred -hhcceEEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 307 -RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 307 -r~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
|+.++|++|++.+|+. |+.||+.+.. .... ++..+.++..++. ..+.....+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-----------~~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-----------DRVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hhhcCCcccCCHHHHHH
Confidence 5689999999999965 9999996421 1111 1233344444443 34444557899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
++|||||+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.++.||++++|++|+++++|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999998864 47999999999999988999999999999999873
No 307
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-40 Score=354.36 Aligned_cols=205 Identities=27% Similarity=0.447 Sum_probs=166.0
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC--CCCceEEEEC----------------
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILID---------------- 294 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~--~~~~G~i~i~---------------- 294 (461)
|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 478999999953 35999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhhcceEEccC-Ccccc-ccHHhhcCCC---CCCCH----HHHHHHHHHccH
Q 012523 295 -------GLDIC-------SMG---LKDLRTKLSIIPQE-PTLFR-GSVRTNLDPL---GMYSD----NEIWEAMEKCQL 348 (461)
Q Consensus 295 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~ti~~Nl~~~---~~~~~----~~~~~~~~~~~l 348 (461)
|.++. ..+ ...+|+.++|++|+ +.+|+ .|+++|+.+. ..... +++.++++..++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 33221 111 12457789999998 56776 4999999642 11221 234445555555
Q ss_pred HHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcc
Q 012523 349 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAH 426 (461)
Q Consensus 349 ~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH 426 (461)
.+..+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||
T Consensus 159 ~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 44333 3347899999999999999999999999999999999999999999998863 3789999999
Q ss_pred Cchhhhh-cCEEEEEeCCEEEEccc
Q 012523 427 RVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 427 ~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+++.+.. ||+|++|++|++++.|.
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecC
Confidence 9999875 99999999999998765
No 308
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.4e-40 Score=348.40 Aligned_cols=211 Identities=23% Similarity=0.344 Sum_probs=168.8
Q ss_pred cEEEEeEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEEECCEeCCCCCH-HHHhh
Q 012523 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGL-KDLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~i~g~~i~~~~~-~~~r~ 308 (461)
.++++|+++.|+++ +..+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999998432 23599999999999999999999999999999999999995 89999999999865443 45678
Q ss_pred cceEEccCC---cccc-ccHHhhcCCCC--CC------CHHHHHHHHHHccHHHHHHhCCCcccc-cccCCCCCCChhHH
Q 012523 309 KLSIIPQEP---TLFR-GSVRTNLDPLG--MY------SDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQR 375 (461)
Q Consensus 309 ~i~~v~Q~~---~lf~-~ti~~Nl~~~~--~~------~~~~~~~~~~~~~l~~~i~~l~~gl~t-~~~~~g~~lSgGq~ 375 (461)
+++|+||++ .+|+ .|+++|+.+.. .. ..++ ....+.++++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 3665 59999997531 01 1111 111123334433 2321 23444578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
||++||||++.+|++|||||||++||+.+.+.+++.+++.. ++.|+|++||+++.+.. ||++++|++|+++...
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999999999999999998853 47899999999998875 9999999999998644
No 309
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=287.01 Aligned_cols=210 Identities=26% Similarity=0.398 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEe--CCCCC----HHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--ICSMG----LKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~--i~~~~----~~~ 305 (461)
+|+++|++|.|+.. .+|.||+|+-+.||.+.+.||||+|||||++.|.=+.-|.+|+..|.|.. .++.+ ..+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 48999999999643 48999999999999999999999999999999999999999999998753 33322 347
Q ss_pred HhhcceEEccCCccccc-cHHhhcCCCC----CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 306 LRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
+|+.+|+|+|..++++- |+-||+--.+ ..+++ +..+.++...+.++.++.| -.|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 89999999999999865 9999984211 22332 3455677777888888877 468999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchhhH
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNFCV 454 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~~~ 454 (461)
|+||||||+.+|++|++||||++|||+-...+.+.++++.. |.|-++|||..+..+. +.+++.|++|+|+|.|.+-|-
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999998999999999765 8899999999999887 999999999999999998884
No 310
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3e-40 Score=313.69 Aligned_cols=180 Identities=24% Similarity=0.367 Sum_probs=149.9
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc---ccccHHhhcCCC
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL---FRGSVRTNLDPL 331 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---f~~ti~~Nl~~~ 331 (461)
|++++||+++|+||||||||||+++|+|+++|++|+|.+||.++. ..+++++|+||++.+ |+.|+.+|+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999876 356899998542
Q ss_pred C--------CC---CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC
Q 012523 332 G--------MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400 (461)
Q Consensus 332 ~--------~~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~L 400 (461)
. .. .++++.++++..++.++. .....+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 01 122355566666654433 2334579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 401 DSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 401 D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+++++ +|++++.|..
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~ 196 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTP 196 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCH
Confidence 9999999999998864 47899999999998765 9999999 7999988763
No 311
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.2e-39 Score=350.69 Aligned_cols=194 Identities=25% Similarity=0.329 Sum_probs=162.4
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC--ceEEEECCEeCCCCCHHHHhhcceEEccCCcccc-cc
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GS 323 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~--~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 323 (461)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. ...+++++||+|++.+++ .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999985 899999999874 235667999999999986 49
Q ss_pred HHhhcCCCC------CCCHHH----HHHHHHHccHHHHHHhCCCcccccccC-CCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 324 VRTNLDPLG------MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSD-EGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 324 i~~Nl~~~~------~~~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~-~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
++||+.+.. ..++++ +.+.++..++ ++..||.+|+ ....||||||||++|||||+.+|++|+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 999996421 123332 2223333332 3345777875 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh-h-hhcCEEEEEeCCEEEEccch
Q 012523 393 LDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT-I-TDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~d~i~vl~~G~i~~~~~~ 451 (461)
|||||++||+.++..+.+.|++.. +++|+|+++|+++. + +.||+|++|++|+++..|..
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~ 291 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKG 291 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCH
Confidence 999999999999999999999865 58999999999974 4 56999999999999999884
No 312
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=315.59 Aligned_cols=195 Identities=21% Similarity=0.251 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCC------------------CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEE
Q 012523 232 RIELEDLKVRYRP------------------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 293 (461)
Q Consensus 232 ~i~~~~v~~~y~~------------------~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i 293 (461)
+|+++||+++|.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5778888777643 1235899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhhcceEEccCCcccc-ccHHhhcCCC---CCCCHHHHH----HHHHHccHHHHHHhCCCcccccccC
Q 012523 294 DGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPL---GMYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSD 365 (461)
Q Consensus 294 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Nl~~~---~~~~~~~~~----~~~~~~~l~~~i~~l~~gl~t~~~~ 365 (461)
+|. +++++|++.+++ .|+++|+.+. ...+.++.. ++++..++. ..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcC
Confidence 984 356778776664 5999998642 122333332 233333333 33344
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCC
Q 012523 366 EGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G 443 (461)
...+|||||+||++||||++++|++|||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 567899999999999999999999999999999999999999999998764 47899999999998875 9999999999
Q ss_pred EEEEccc
Q 012523 444 SFSFNNV 450 (461)
Q Consensus 444 ~i~~~~~ 450 (461)
++++.|.
T Consensus 220 ~i~~~g~ 226 (264)
T PRK13546 220 KLKDYGE 226 (264)
T ss_pred EEEEeCC
Confidence 9998876
No 313
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=326.54 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH-HHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~-~~r~~i 310 (461)
.+++++++++|+ ...+++||||++++||+.||.|+||||||||+++|.|+|+|++|+|++||++++--++. ..|..|
T Consensus 4 ~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 489999999997 33589999999999999999999999999999999999999999999999999876665 467779
Q ss_pred eEEccCCccccc-cHHhhcCCCCCC------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~~------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
|+|.|++.|++. |+.||+.++.+. +..+..+ .+.+..+++ |++-...+....||-|||||+.|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999976 999999765432 1111111 122333332 44545556667899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
|+++|++||||||||-|-|...+.+++.++++. .|+|||+|||++..+.. |||+-||.+|+++.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999864 59999999999998877 99999999999875
No 314
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.3e-40 Score=346.66 Aligned_cols=205 Identities=22% Similarity=0.377 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH-HHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~-~~r~~i 310 (461)
.++++|+++ .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.+
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 489999984 279999999999999999999999999999999999999999999999998776543 456789
Q ss_pred eEEccCC---cccc-ccHHhhcCCCCC---------CCHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 012523 311 SIIPQEP---TLFR-GSVRTNLDPLGM---------YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ 376 (461)
Q Consensus 311 ~~v~Q~~---~lf~-~ti~~Nl~~~~~---------~~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq~Q 376 (461)
+||||++ .+|. .|+++|+.+... ...++. .....++++.+ |+. ........+|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 3554 599999964210 111111 11123344443 332 2345566789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|+++..|.
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999864 47899999999998875 99999999999986554
No 315
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-40 Score=291.23 Aligned_cols=204 Identities=24% Similarity=0.320 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
+..++++.+|++....+|+|+|++|++||.++++||||||||||+|+++|+.+|..|+|.+||.++..-.. .=|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----ccee
Confidence 56678899997655569999999999999999999999999999999999999999999999999875433 2499
Q ss_pred EccCCccccc-cHHhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
|+|++-|++- ++.||+.++- -..+++ ..+.+..+++.++- .....+||||||||+.|||||
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-----------~~~i~qLSGGmrQRvGiARAL 147 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-----------HKYIWQLSGGMRQRVGIARAL 147 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-----------ccceEeecchHHHHHHHHHHh
Confidence 9999999976 9999998642 223322 23344455554432 233467999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeC--CEEEE-ccchh
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GSFSF-NNVNF 452 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~--G~i~~-~~~~~ 452 (461)
.-+|++|+||||+++||.-|++.++++|.+.. .++.+++|||+.+..-. ++|++||+- |+|++ ..++|
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCH
Confidence 99999999999999999999999999998854 38999999999987765 999999976 88886 44444
No 316
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=345.07 Aligned_cols=213 Identities=22% Similarity=0.317 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH-HHHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~-~~~r~~i 310 (461)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4899999742 38999999999999999999999999999999999999999999999998865443 3456789
Q ss_pred eEEccCCc---ccc-ccHHhhcCCCCC-C--------CHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 012523 311 SIIPQEPT---LFR-GSVRTNLDPLGM-Y--------SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ 376 (461)
Q Consensus 311 ~~v~Q~~~---lf~-~ti~~Nl~~~~~-~--------~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq~Q 376 (461)
+|+||++. +|. .|+.||+.+... . ...+. .....+++..+ |++ ........+|||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHH
Confidence 99999973 554 699999865311 0 11110 11123344443 232 2234455789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc--chh
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN--VNF 452 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~--~~~ 452 (461)
|++||||++.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|++||+++.+.. ||++++|++|++++.| ..+
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998864 47899999999998865 9999999999998754 335
Q ss_pred hHHHh
Q 012523 453 CVQRI 457 (461)
Q Consensus 453 ~~~~~ 457 (461)
+++++
T Consensus 484 ~~~~~ 488 (501)
T PRK11288 484 TERQA 488 (501)
T ss_pred CHHHH
Confidence 55544
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.4e-39 Score=376.41 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=178.5
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
..|+++|++++|++..+.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|+.|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3599999999996533469999999999999999999999999999999999999999999999999865 455678889
Q ss_pred eEEccCCccccc-cHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
||+||++.++.. |++||+.+.. ...++ .+.+.++..++.+..++ ...+||||||||+++||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk-----------~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR-----------LAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999998864 9999996421 12222 23445666666554433 34679999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||+.+|++++|||||+|||+.+++.+++.|++. .+++|+|++||+++.++. ||||++|++|+++..|..
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTI 2154 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999885 357999999999999886 999999999999998873
No 318
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.8e-39 Score=284.61 Aligned_cols=143 Identities=32% Similarity=0.530 Sum_probs=133.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+||. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4689999999642 5999999999999999999999999999999999999999999999984 37999
Q ss_pred EccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
+|| ||+||+||++||||++++|+++|
T Consensus 68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 998 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
|||||++||+.+...+.+.+++. ++|++++||+++.+.. ||++++|++|+
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999876 4799999999999865 89999999985
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.9e-40 Score=315.53 Aligned_cols=201 Identities=23% Similarity=0.349 Sum_probs=158.3
Q ss_pred EeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEE-----------ECCEeCCCCCHH
Q 012523 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK 304 (461)
Q Consensus 236 ~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~-----------i~g~~i~~~~~~ 304 (461)
.||+++|++. ..+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+....
T Consensus 4 ~~~~~~y~~~-~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 3688999643 35899999 4999999999999999999999999999999999996 888887665333
Q ss_pred HHhh--cceEEccCCccccccHHhhcCCC-CCC-CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 012523 305 DLRT--KLSIIPQEPTLFRGSVRTNLDPL-GMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (461)
Q Consensus 305 ~~r~--~i~~v~Q~~~lf~~ti~~Nl~~~-~~~-~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l 380 (461)
..+. .+++++|.+.+++.++.+|+... ... .+++..++++..++. ........+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELR-----------HVLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHH
Confidence 2322 37888888776655544444321 111 123445555555443 33445567899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||++.+|++++|||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+.. ||+|++| +|++.+.|+
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~~ 221 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYGV 221 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCccee
Confidence 9999999999999999999999999999999988643 7899999999999885 9999999 577887777
No 320
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-40 Score=287.26 Aligned_cols=207 Identities=26% Similarity=0.405 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC----------
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---------- 301 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~---------- 301 (461)
.++++|+.++|+.. .+|+++||+-++|+.+.|+|.|||||||+++++.=+-.|+.|+|.++|..++--
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58999999999644 499999999999999999999999999999999999999999999999877421
Q ss_pred C---HHHHhhcceEEccCCcccc-ccHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCC
Q 012523 302 G---LKDLRTKLSIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (461)
Q Consensus 302 ~---~~~~r~~i~~v~Q~~~lf~-~ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~ 369 (461)
+ .+.+|.+.++|+|...|++ .|+.||.--.+ ..++ ++....+.++|+.+-.+..| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 1 2357889999999999985 59999973111 1222 23344567778777666665 67
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 370 lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
|||||+||.+|||||..+|+++++|||||+|||+-.-++++.++++. +++|+++|||.+...+. +..++.+++|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 89999999999999999999999999999999999888999988865 58999999999999998 89999999999999
Q ss_pred ccch
Q 012523 448 NNVN 451 (461)
Q Consensus 448 ~~~~ 451 (461)
+|+.
T Consensus 233 ~G~P 236 (256)
T COG4598 233 EGPP 236 (256)
T ss_pred cCCh
Confidence 9874
No 321
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.6e-39 Score=310.30 Aligned_cols=183 Identities=25% Similarity=0.325 Sum_probs=149.9
Q ss_pred EEeCCCCCccccceeEEee-----CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEc
Q 012523 240 VRYRPNTPLVLKGITCTFK-----EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~-----~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 314 (461)
|+|++..+ .+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|+|
T Consensus 1 ~~y~~~~~-~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMKK-TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCccccc-ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 56765443 8889999887 69999999999999999999999999999999999984 589999
Q ss_pred cCCcc-ccccHHhhcCCCC-CC-C-HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 315 QEPTL-FRGSVRTNLDPLG-MY-S-DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 315 Q~~~l-f~~ti~~Nl~~~~-~~-~-~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
|++.. +..|++||+.... .. . .+...++++..++.+. ......+||||||||++|||||+.+|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99875 5789999986421 11 1 1223445555554433 3344568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 391 LILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
+||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+++..+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCee
Confidence 99999999999999999999998864 37899999999999885 9999999775433
No 322
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=303.18 Aligned_cols=189 Identities=23% Similarity=0.337 Sum_probs=168.7
Q ss_pred ceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC----CHHHHhhcceEEccCCccccc-cHHh
Q 012523 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTKLSIIPQEPTLFRG-SVRT 326 (461)
Q Consensus 252 ~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~----~~~~~r~~i~~v~Q~~~lf~~-ti~~ 326 (461)
++||+.+.-.++||-|+||||||||+|+++|+..|++|.|.+||..+.+- ...--+++||||+||..||+- ||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 57888888799999999999999999999999999999999999877543 233447889999999999964 9999
Q ss_pred hcCCCCCC-CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 012523 327 NLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (461)
Q Consensus 327 Nl~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~ 405 (461)
|++++.+. +.++..+++...|+.+.+++.| .+||||||||+||+|||+..|++|+||||.|+||....
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99987644 4667888999999999999998 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 406 AILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 406 ~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++++-.++++.+ +.-|+.|||.++.+.. ||+|++|++|++.+.|+.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~ 213 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPL 213 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcH
Confidence 999999988765 5689999999988766 999999999999999873
No 323
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=328.81 Aligned_cols=195 Identities=23% Similarity=0.285 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeCCCC-CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 232 RIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~-~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
.++++|++|.|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999996532 4599999999999999999999999999999999999999999999999752
Q ss_pred eEEccCCcccc-ccHHhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFR-GSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~-~ti~~Nl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
++.+.+.++. .|++||+.+.. ..+.++ +.++++.+++.++++ .....||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHH
Confidence 1222333443 49999986421 223332 334555555554443 334689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~ 226 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGD 226 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999998864 47899999999998876 99999999999998875
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-39 Score=342.12 Aligned_cols=201 Identities=20% Similarity=0.323 Sum_probs=159.3
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999963 35999999999999999999999999999999999999999999999872 36999
Q ss_pred EccCCccccc-cHHhhcCCCCC-C----------------CHH---HHHHHH----------HHccHHHHHHhCCCcccc
Q 012523 313 IPQEPTLFRG-SVRTNLDPLGM-Y----------------SDN---EIWEAM----------EKCQLKATISRLPMLLDS 361 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~~-~----------------~~~---~~~~~~----------~~~~l~~~i~~l~~gl~t 361 (461)
++|++.+|.. |++||+.+... . ..+ .+.+.. ....+.+.++.+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988765 99999864210 0 000 000000 011123334433 3332
Q ss_pred cc-cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEE
Q 012523 362 SV-SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMV 439 (461)
Q Consensus 362 ~~-~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~v 439 (461)
.. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+ .+.|||+|||+++.+.. ||+|++
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 22 234578999999999999999999999999999999999999999999975 37899999999998876 999999
Q ss_pred EeCCEEE-Eccc
Q 012523 440 LSYGSFS-FNNV 450 (461)
Q Consensus 440 l~~G~i~-~~~~ 450 (461)
|++|+++ ..|.
T Consensus 225 l~~g~i~~~~g~ 236 (530)
T PRK15064 225 LDYGELRVYPGN 236 (530)
T ss_pred EeCCEEEEecCC
Confidence 9999995 5664
No 325
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=298.43 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=179.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.+++++|+++|++ ..+++|+||++++|++.|++|||||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 4889999999953 359999999999999999999999999999999999999999999999998863 4567899
Q ss_pred EEccCCccccc-cHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|+|.+.-|+.. |+.|-+.++. .....++.+- ++.|++++. +--...+...+||.|.+|+|.+.-|++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999965 9999987643 2344444332 345666653 22233456688999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchhhHHH
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNFCVQR 456 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~~~~~ 456 (461)
|+++|||||+|||||-+.+.+.+.+.+.+ +|.|||+.||+++.++. ||+++.|++|+-|-+|..--++|
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999999998865 48999999999999987 99999999999999887544444
No 326
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.6e-39 Score=341.80 Aligned_cols=204 Identities=23% Similarity=0.365 Sum_probs=165.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH-Hhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~-~r~~i 310 (461)
.++++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999988766554 45679
Q ss_pred eEEccCC---cccc-ccHHhhcCCC--C--CC--CHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhHHHHHH
Q 012523 311 SIIPQEP---TLFR-GSVRTNLDPL--G--MY--SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 311 ~~v~Q~~---~lf~-~ti~~Nl~~~--~--~~--~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq~Qrl~ 379 (461)
+|+||++ .+|. .|+.+|+... . .. ...+. ...+.+++..+ |+. .........||||||||++
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence 9999986 3665 4999998421 0 00 11111 11123344443 333 2345556789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~ 485 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGAL 485 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999998864 47899999999999876 9999999999998655
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=339.40 Aligned_cols=193 Identities=17% Similarity=0.328 Sum_probs=163.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+|
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 5999999999964 34999999999999999999999999999999999999999999999872 4799
Q ss_pred EEccCCc--ccc-ccHHhhcCCCC--CCCHHHHHHHHHHccHH-HHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 312 IIPQEPT--LFR-GSVRTNLDPLG--MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 312 ~v~Q~~~--lf~-~ti~~Nl~~~~--~~~~~~~~~~~~~~~l~-~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
|++|++. ++. .|+++|+.... ...++++.+.++..++. +.. .....+||||||||++||||++
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHHHh
Confidence 9999974 443 59999986421 12244556666666552 222 2345789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEE-Eccc
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFS-FNNV 450 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~-~~~~ 450 (461)
.+|++|||||||++||+.+.+.+.+.+++. +.|+|+|||+++.+.. ||++++|++|+++ ..|.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~ 519 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGT 519 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCC
Confidence 999999999999999999999999999876 4599999999998876 9999999999998 5564
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.2e-39 Score=342.34 Aligned_cols=202 Identities=25% Similarity=0.373 Sum_probs=161.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..+|
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 59999999999622 4599999999999999999999999999999999999999999999975 14699
Q ss_pred EEccCCccccc-cHHhhcCCCC-CC----------------CH----------HHHHHHHHHc-------cHHHHHHhCC
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG-MY----------------SD----------NEIWEAMEKC-------QLKATISRLP 356 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~-~~----------------~~----------~~~~~~~~~~-------~l~~~i~~l~ 356 (461)
||||+|.+++. |+.||+.+.. .. .+ .++.+.++.+ .+.+.++.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999998865 9999986421 00 00 0111111111 122333332
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cC
Q 012523 357 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SD 435 (461)
Q Consensus 357 ~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d 435 (461)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence 232 2345567899999999999999999999999999999999999999999998763 599999999999876 99
Q ss_pred EEEEEeCCEEE-Eccc
Q 012523 436 MVMVLSYGSFS-FNNV 450 (461)
Q Consensus 436 ~i~vl~~G~i~-~~~~ 450 (461)
+|++|++|+++ ..|.
T Consensus 229 ~i~~l~~g~i~~~~g~ 244 (556)
T PRK11819 229 WILELDRGRGIPWEGN 244 (556)
T ss_pred eEEEEeCCEEEEecCC
Confidence 99999999987 4553
No 329
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.6e-39 Score=339.83 Aligned_cols=205 Identities=20% Similarity=0.263 Sum_probs=163.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEEECCEeCCC-CCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS-MGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~i~g~~i~~-~~~~~~r~~ 309 (461)
.++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+....|+.
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999953 3499999999999999999999999999999999999876 79999999987632 233456788
Q ss_pred ceEEccCCcccc---ccHHhhcCCC--C------CCCH---HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 310 LSIIPQEPTLFR---GSVRTNLDPL--G------MYSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 310 i~~v~Q~~~lf~---~ti~~Nl~~~--~------~~~~---~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
++|++|++.++. .++++++... . ...+ +++.++++..++.+. .......+||||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 407 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQQ 407 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHHH
Confidence 999999986642 3677765321 0 0111 223444444444320 22344578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEccCchhhhh--cCEEEEEeCCEEEEc
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-G-STVITIAHRVPTITD--SDMVMVLSYGSFSFN 448 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~~--~d~i~vl~~G~i~~~ 448 (461)
||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ + .|+|++||+++.+.. ||++++|++|+|++.
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999999999999999988643 3 479999999999863 899999999998764
No 330
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.9e-38 Score=367.48 Aligned_cols=208 Identities=23% Similarity=0.357 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeC--CCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC---CCceEEEECCEeCCCCCHHHH
Q 012523 232 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDL 306 (461)
Q Consensus 232 ~i~~~~v~~~y~--~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~---~~~G~i~i~g~~i~~~~~~~~ 306 (461)
.++++||++.|+ ++.+.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 378999999995 234569999999999999999999999999999999999998 78899999999974 257
Q ss_pred hhcceEEccCCccc-cccHHhhcCCCC------CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 307 RTKLSIIPQEPTLF-RGSVRTNLDPLG------MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 307 r~~i~~v~Q~~~lf-~~ti~~Nl~~~~------~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
|+.+|||+|++.++ ..|++||+.+.. ..+++ ++.++++..++. +..|+.+|+.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 88999999987654 569999997421 12332 234455555543 3368888888889999999
Q ss_pred HHHHHHHHhhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhh--hhcCEEEEEeCC-EEEEccc
Q 012523 376 QLFCLGRVLLKRNR-ILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTI--TDSDMVMVLSYG-SFSFNNV 450 (461)
Q Consensus 376 Qrl~lARal~~~p~-iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~--~~~d~i~vl~~G-~i~~~~~ 450 (461)
||++|||||+.+|+ +|+||||||+||+.+...+++.|++. .+++|||+++|+++.. +.+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999986 4589999999999863 569999999997 9999886
No 331
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-39 Score=288.62 Aligned_cols=207 Identities=29% Similarity=0.407 Sum_probs=180.7
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++||+++|+. +.+++++|++|++|.+++++||||||||||+.+++|+.++++|+|.+||.++..++.+++.+++++
T Consensus 2 I~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 688999999953 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcccc-ccHHhhcCCCC-CCC-----H---HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 313 IPQEPTLFR-GSVRTNLDPLG-MYS-----D---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 313 v~Q~~~lf~-~ti~~Nl~~~~-~~~-----~---~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+-|+.++-. -||+|-..|++ +++ . ..+.+|++-.++.+.-++. -.+||||||||--+|.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhhe
Confidence 999998764 59999987754 332 1 2356676666665433332 2468999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
.++.+.+.++||||.++||-.....+++.|++..+ +||+++|=|+.+.... +|.|+.|++|+++.+|+.-
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ 221 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPD 221 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHH
Confidence 99999999999999999999999999999988543 8999999999999876 8999999999999999843
No 332
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.6e-38 Score=299.71 Aligned_cols=186 Identities=20% Similarity=0.241 Sum_probs=149.3
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEE-ECCEeCCCCCHHHHhhcceEEccCCccccc-cHHh
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRT 326 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 326 (461)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777532 13356777775 9999
Q ss_pred hcCCCC---CCCHHHHHHHH-HHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH
Q 012523 327 NLDPLG---MYSDNEIWEAM-EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402 (461)
Q Consensus 327 Nl~~~~---~~~~~~~~~~~-~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~ 402 (461)
|+.+.. ..+.++..+.+ +..+ ++..+++ ....||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQ-------LEQCYTD----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhC-------hhHHhhc----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 996421 22333332222 2222 2222333 3356999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccchhhHHHhH
Q 012523 403 ATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVNFCVQRII 458 (461)
Q Consensus 403 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~~~~~~~~ 458 (461)
.+.+.+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|.-...+|..
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 194 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALF 194 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHH
Confidence 999999998866555789999999999986 59999999999999988867666654
No 333
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=336.17 Aligned_cols=205 Identities=20% Similarity=0.348 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH-HHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~-~~r~~i 310 (461)
.|+++|+++.| +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 59999999874 2389999999999999999999999999999999999999999999999999776654 346779
Q ss_pred eEEccCCc---ccc-ccHHhhc-----CCC-CC---CCHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 012523 311 SIIPQEPT---LFR-GSVRTNL-----DPL-GM---YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ 376 (461)
Q Consensus 311 ~~v~Q~~~---lf~-~ti~~Nl-----~~~-~~---~~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq~Q 376 (461)
+|+||++. +|. .|+.+|. ... .. .+..+..+ ...+.+..+ |+. ........+|||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence 99999963 565 4777663 211 10 11111111 122334443 221 1235556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
|++||||++.+|++|||||||++||+.+.+.+++.++++. .++|+|++||+++.+.. |||+++|++|+++.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998753 47899999999998875 99999999999984
No 334
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.2e-39 Score=345.30 Aligned_cols=198 Identities=22% Similarity=0.323 Sum_probs=166.7
Q ss_pred CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEeCCCCCHHHHhhcceEEccCCcccc-
Q 012523 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR- 321 (461)
Q Consensus 246 ~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 321 (461)
++++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.++||+|++.+++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 456999999999999999999999999999999999999885 899999999875 3567889999999999985
Q ss_pred ccHHhhcCCCC------CCCHHHHHHHHHHccHHHHHHh--CCCcccccccCC--CCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 322 GSVRTNLDPLG------MYSDNEIWEAMEKCQLKATISR--LPMLLDSSVSDE--GENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 322 ~ti~~Nl~~~~------~~~~~~~~~~~~~~~l~~~i~~--l~~gl~t~~~~~--g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
.||+||+.+.. ..+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 49999996421 1122221 1123334443 344678999984 4789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch-h-hhhcCEEEEEeCCEEEEccch
Q 012523 392 ILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVP-T-ITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~-~~~~d~i~vl~~G~i~~~~~~ 451 (461)
+|||||++||+.+...+.+.+++.. +++|+|+++|+++ . .+.||++++|++|++++.|+.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~ 251 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSP 251 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCH
Confidence 9999999999999999999999865 4899999999985 3 567999999999999999984
No 335
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-38 Score=340.31 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..|+
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48999999999622 3599999999999999999999999999999999999999999999975 24699
Q ss_pred EEccCCccccc-cHHhhcCCCC-C-----------------CCH---------HHHHHHHHHccH-------HHHHHhCC
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG-M-----------------YSD---------NEIWEAMEKCQL-------KATISRLP 356 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~-~-----------------~~~---------~~~~~~~~~~~l-------~~~i~~l~ 356 (461)
||||+|.+++. |++||+.+.. . ..+ .++.++++.++. .+.+..+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 99999998864 9999986421 0 001 123333444442 2233333
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cC
Q 012523 357 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SD 435 (461)
Q Consensus 357 ~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d 435 (461)
|++ .......+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. ||
T Consensus 151 -~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 151 -RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence 232 134556789999999999999999999999999999999999999999999875 3699999999999886 89
Q ss_pred EEEEEeCCEEE-Eccc
Q 012523 436 MVMVLSYGSFS-FNNV 450 (461)
Q Consensus 436 ~i~vl~~G~i~-~~~~ 450 (461)
++++|++|+++ ..|.
T Consensus 227 ~v~~l~~g~i~~~~g~ 242 (552)
T TIGR03719 227 WILELDRGRGIPWEGN 242 (552)
T ss_pred eEEEEECCEEEEecCC
Confidence 99999999986 4454
No 336
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.3e-38 Score=318.62 Aligned_cols=174 Identities=25% Similarity=0.357 Sum_probs=146.0
Q ss_pred EEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc-cHHhhcCCCC---CCCH----
Q 012523 265 VVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD---- 336 (461)
Q Consensus 265 ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~---- 336 (461)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++|++|++.+|+. |+++|+.+.. ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 589999999999999999999999999999999977654 36789999999999975 9999997531 1222
Q ss_pred HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 012523 337 NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF 416 (461)
Q Consensus 337 ~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 416 (461)
+++.++++..++.++.+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 23444555555544333 3446899999999999999999999999999999999999999999998864
Q ss_pred C--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 417 P--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 417 ~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+ ++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~ 185 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTP 185 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 3 7899999999998765 999999999999987763
No 337
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=305.35 Aligned_cols=418 Identities=19% Similarity=0.181 Sum_probs=272.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccHH
Q 012523 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPT-VIVAKYIQGYYLSSARELMRMNGTTKAPIV 92 (461)
Q Consensus 14 srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
.|++.|++..-..+......++.+.+.++.+..-++....+...+.+.. .++...+.+.+.+...+..-..++..+++.
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 5889999888666666666665555555444444443333332222221 222223334444433333333333445554
Q ss_pred HHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC----CCc
Q 012523 93 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV---LLP----GKH 165 (461)
Q Consensus 93 ~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~----g~~ 165 (461)
-.-.+...+.++|.-|+.++..+...++..+..............|+....+++.-+..++ .++.+ ++. +.+
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~il-sy~vi~~p~Fs~h~y~~~ 344 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGIL-SYVVIAIPFFSGHVYDDL 344 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-eeeEEeeeeecccccCCc
Confidence 4555777888999999988766655554444433333333333344443333332111111 11100 111 233
Q ss_pred cHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-------------CCCcc---CCCC--
Q 012523 166 LPGFVGLSL----SYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEP-------------PAIIE---ETKP-- 223 (461)
Q Consensus 166 ~~g~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~-------------~~~~~---~~~~-- 223 (461)
++..+...+ .++..+...+..+......+.+-.....|+.|+++.-.+- ..+.+ ...+
T Consensus 345 s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~ 424 (659)
T KOG0060|consen 345 SPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGS 424 (659)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCC
Confidence 333322211 1222233333333334444555556678888876421100 00000 0011
Q ss_pred CCCCCCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH
Q 012523 224 PASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL 303 (461)
Q Consensus 224 ~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~ 303 (461)
...++....|++++|++.-|.+++.+.+|+||+|+.|+.+.|.||||||||+|++.+.|+|+-.+|.+.--...- +
T Consensus 425 ~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----~ 500 (659)
T KOG0060|consen 425 GKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----P 500 (659)
T ss_pred cccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC----C
Confidence 112344567999999999887666688999999999999999999999999999999999999999997533211 1
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCC--------CCCCHHHHHHHHHHccHHHHHHhCCCccccccc-CCCCCCChhH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVS-DEGENWSVGQ 374 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~-~~g~~lSgGq 374 (461)
+.+-|+||.|+.-.||+||-+-+- ...+|+++.+.++.+++.+.+.+. +|+|+++. +=...||+||
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHH
Confidence 358999999999999999988532 135789999999999999988775 68887764 4457899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCC
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G 443 (461)
+||+|+||.++++|++-+|||.|||+|.+.|..+.+.+++. +.|.|.|+||.+..+.-|.++-|+.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 99999999999999999999999999999999999998874 79999999999999999999999863
No 338
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-37 Score=279.33 Aligned_cols=154 Identities=40% Similarity=0.626 Sum_probs=143.4
Q ss_pred EEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEc
Q 012523 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (461)
Q Consensus 235 ~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 314 (461)
++|++|.|++. ++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......+++.++|++
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999643 5999999999999999999999999999999999999999999999999988777777888999999
Q ss_pred cCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEe
Q 012523 315 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394 (461)
Q Consensus 315 Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLD 394 (461)
| ||+||+||++||||++.+|++++||
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9 8999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 395 EATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 395 Epts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
|||++||+.+...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999988644 5899999999999988 69999999985
No 339
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=279.75 Aligned_cols=200 Identities=26% Similarity=0.382 Sum_probs=170.1
Q ss_pred CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc--cc-cc
Q 012523 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT--LF-RG 322 (461)
Q Consensus 246 ~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~ 322 (461)
.+++|+++|++|++|+++-|+|.||||||||++.++|-..|++|+|.|||.|+..++....-..++-|+|||. .+ +.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4569999999999999999999999999999999999999999999999999999998887788999999996 35 45
Q ss_pred cHHhhcCCCC------CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 323 SVRTNLDPLG------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 323 ti~~Nl~~~~------~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
||.||+.+.. ..+... ..-.+....+.+..+|.|++..++++..-|||||||-++++.|.++.|++|+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~l--n~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSAL--NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhh--hHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999996421 112111 11122234456788999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH--cCCcEEEEEccCchh-hhhcCEEEEEeCCEEEE
Q 012523 397 TASIDSATDAILQRIIREE--FPGSTVITIAHRVPT-ITDSDMVMVLSYGSFSF 447 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~-~~~~d~i~vl~~G~i~~ 447 (461)
|++|||.+...+++.=.+. ..+-|.++|||+++. +.+-+|.++|++|+|+-
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 9999999999998876663 235799999999975 45679999999999985
No 340
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-37 Score=282.67 Aligned_cols=207 Identities=22% Similarity=0.287 Sum_probs=170.5
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH-HHHhhc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTK 309 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~-~~~r~~ 309 (461)
.-|+++||+++|. ++++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|++
T Consensus 30 ~li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 3599999999994 4569999999999999999999999999999999999999999999999999887776 899999
Q ss_pred ceEEccCCcc-c--cccHHhhcC--CC------C-CCCHHH---HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 310 LSIIPQEPTL-F--RGSVRTNLD--PL------G-MYSDNE---IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 310 i~~v~Q~~~l-f--~~ti~~Nl~--~~------~-~~~~~~---~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
||+|+-+-.. | ..+++|-+. ++ . ++++++ ....++..++.+. .+..-.+||.||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-----------a~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-----------ADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-----------ccCchhhcCHhH
Confidence 9999875432 2 346666553 11 1 234433 2334455555442 233346799999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP---GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||+-||||++++|++|||||||++||....+.+.+.+.+... ..++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999988643 5689999999999887 59999999999998874
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.3e-37 Score=281.11 Aligned_cols=145 Identities=26% Similarity=0.315 Sum_probs=130.7
Q ss_pred EeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEcc
Q 012523 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (461)
Q Consensus 236 ~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 315 (461)
.|++++|++ ..++++ ++++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~--~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 578999954 358888 49999999999999999999999999999999999999999953 788888
Q ss_pred CCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 012523 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (461)
Q Consensus 316 ~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDE 395 (461)
++. ||||||||++||||++.+|++++|||
T Consensus 69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 653 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-C-CcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 396 ATASIDSATDAILQRIIREEF-P-GSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 396 pts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
||++||+.+.+.+.+.+++.. + ++|+|++||+++.++. ||++++|+++-.+
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999998864 3 3899999999999885 9999999987654
No 342
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7e-37 Score=327.31 Aligned_cols=191 Identities=22% Similarity=0.302 Sum_probs=156.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..|+
T Consensus 322 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLA 388 (552)
T ss_pred EEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEE
Confidence 5999999999953 3599999999999999999999999999999999999999999999954 2 1599
Q ss_pred EEccCCc-ccc-ccHHhhcCCCCC---CC--HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 312 IIPQEPT-LFR-GSVRTNLDPLGM---YS--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 312 ~v~Q~~~-lf~-~ti~~Nl~~~~~---~~--~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
|+||++. ++. .|+.+|+.+... .. +.+..+.++..++.+ ........+||||||||++||||+
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG----------SDQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999974 564 599999975321 11 122223333333311 112344578999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeC-CEEEE
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSY-GSFSF 447 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~-G~i~~ 447 (461)
+.+|++|||||||++||+.+.+.+.+.|++.. .|+|+|||+++.+.. ||+|++|++ |+++.
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEE
Confidence 99999999999999999999999999999863 489999999998876 999999997 68764
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.6e-37 Score=331.61 Aligned_cols=197 Identities=20% Similarity=0.345 Sum_probs=159.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
-|+++||++.|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .||
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4999999999953 35999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEccCC-ccccc-cHHhhcCCCC-CC--C--HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 312 IIPQEP-TLFRG-SVRTNLDPLG-MY--S--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 312 ~v~Q~~-~lf~~-ti~~Nl~~~~-~~--~--~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
|++|++ .+++. |+.+|+.... .. . ..++.+.++..++.. .........||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP----------KRAMTPVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH----------HHHhChhhhCCHHHHHHHHHHHHH
Confidence 999986 46654 9999996432 11 1 222333343333311 112334467999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEe-CCEEEEccchhh
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLS-YGSFSFNNVNFC 453 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~-~G~i~~~~~~~~ 453 (461)
+.+|++|||||||++||+.+...+.+.+++. +.|+|+|||+.+.+.. ||+|++++ +|++++..-++-
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~ 524 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYH 524 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHH
Confidence 9999999999999999999999999999875 4599999999998875 99999998 899987544443
No 344
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.6e-37 Score=326.73 Aligned_cols=192 Identities=21% Similarity=0.294 Sum_probs=156.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
..++++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..+
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 35999999999953 3599999999999999999999999999999999999999999999954 2 159
Q ss_pred eEEccCC-cccc-ccHHhhcCCCCC---C--CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 311 SIIPQEP-TLFR-GSVRTNLDPLGM---Y--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 311 ~~v~Q~~-~lf~-~ti~~Nl~~~~~---~--~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||+||++ .++. .|+++|+.+... . .+.+...+++..++.+ ........+||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5655 499999964321 1 1222233344433321 11234456899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeC-CEEEE
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSY-GSFSF 447 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~-G~i~~ 447 (461)
++.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||+|++|++ |++.+
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~ 523 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEW 523 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEE
Confidence 999999999999999999999999999998863 489999999998876 999999986 88874
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1e-36 Score=331.74 Aligned_cols=195 Identities=18% Similarity=0.309 Sum_probs=158.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
..++++||++.|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3589999999999999999999999999999999999999999999875 2469
Q ss_pred eEEccCCccccccHHhhcC--C---CCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 311 SIIPQEPTLFRGSVRTNLD--P---LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 311 ~~v~Q~~~lf~~ti~~Nl~--~---~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
+|++|++. ...++.+|.. + .....++++.++++..++.+.. .......||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2224444421 1 1123456666777777664211 12334689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEE-Eccc
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFS-FNNV 450 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~-~~~~ 450 (461)
.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||++..+.. ||++++|++|+++ ..|.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~ 708 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGT 708 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence 999999999999999999999999888775 3 499999999999886 9999999999998 4565
No 346
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-37 Score=299.11 Aligned_cols=211 Identities=24% Similarity=0.364 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeC--CCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-----CceEEEECCEeCCCCCHH
Q 012523 232 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~--~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-----~~G~i~i~g~~i~~~~~~ 304 (461)
-++++|++..|. +....+++++||+|++||++|+||+||||||-..+.++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 488999998884 3345699999999999999999999999999999999999976 479999999999999988
Q ss_pred HHhh----cceEEccCCccc--c-ccHH----hhcCCCC----CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCC
Q 012523 305 DLRT----KLSIIPQEPTLF--R-GSVR----TNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (461)
Q Consensus 305 ~~r~----~i~~v~Q~~~lf--~-~ti~----~Nl~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~ 369 (461)
++|. +|++++|||.-- + -||. |-|.... ....+++.+.++.+|+.+--. .+.....+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 8774 699999999732 2 1443 3343322 223456677788888754211 12233367
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 370 lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
||||||||+.||.||+.+|++||-||||.+||...+.+|+++|+++. .+..+++|||++..++. ||||+||.+|+|+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 89999999999999999999999999999999999999999999864 37899999999999987 9999999999999
Q ss_pred Eccc
Q 012523 447 FNNV 450 (461)
Q Consensus 447 ~~~~ 450 (461)
|.|.
T Consensus 238 E~~~ 241 (534)
T COG4172 238 ETGT 241 (534)
T ss_pred ecCc
Confidence 9998
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-37 Score=330.66 Aligned_cols=194 Identities=22% Similarity=0.380 Sum_probs=157.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++||++.|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++|
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999953 35999999999999999999999999999999999999999999999741 2699
Q ss_pred EEccCC--cccc-ccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 312 IIPQEP--TLFR-GSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 312 ~v~Q~~--~lf~-~ti~~Nl~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|++|++ .++. .|+.+++... ....++++.+.++..++.. .........||||||||++||||++.+
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 999985 2433 3777776421 1122334455555554421 112234467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEE-Eccc
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFS-FNNV 450 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~-~~~~ 450 (461)
|++|||||||++||+.+...+.+.|.++ + .|+|+|||+++.+.. ||+|++|++|+++ ..|.
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~ 511 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGD 511 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCC
Confidence 9999999999999999999999999886 3 599999999999876 9999999999997 4443
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.1e-37 Score=327.31 Aligned_cols=190 Identities=24% Similarity=0.288 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++++|++ . .|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999953 2 5999999999999999999999999999999999999999999986 1599
Q ss_pred EEccCCccc-cccHHhhcCCCC-CCC-HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 312 IIPQEPTLF-RGSVRTNLDPLG-MYS-DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 312 ~v~Q~~~lf-~~ti~~Nl~~~~-~~~-~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
|+||++.++ +.|+++|+.+.. ... +....++++..++.+..+ ....+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998764 569999997431 122 223455666666654433 334679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 389 RILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. |||+++|++ ++...|
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g 535 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHG 535 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeee
Confidence 99999999999999999999999998643 7899999999998875 999999965 766544
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=328.33 Aligned_cols=198 Identities=22% Similarity=0.319 Sum_probs=151.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 789999999964 359999999999999999999999999999999999999999999998842 3788
Q ss_pred EccCCccccccHHhhcCCCC----CCCH-----------HHH---HHHHH-------HccHHHHHHhCCCccc-ccccCC
Q 012523 313 IPQEPTLFRGSVRTNLDPLG----MYSD-----------NEI---WEAME-------KCQLKATISRLPMLLD-SSVSDE 366 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~----~~~~-----------~~~---~~~~~-------~~~l~~~i~~l~~gl~-t~~~~~ 366 (461)
++|++..+..|+.+++.-.. ..+. ..+ ....+ ...+...+..+ |+. ......
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~ 146 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP 146 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence 88865444445444331000 0000 000 00000 01122334443 332 223445
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 367 g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+.+.+.. ||+|++|++|++
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 6789999999999999999999999999999999999999999999875 4699999999999876 999999999999
Q ss_pred EE
Q 012523 446 SF 447 (461)
Q Consensus 446 ~~ 447 (461)
+.
T Consensus 225 ~~ 226 (638)
T PRK10636 225 FE 226 (638)
T ss_pred EE
Confidence 75
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.4e-36 Score=273.48 Aligned_cols=160 Identities=23% Similarity=0.305 Sum_probs=130.4
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 45899999999999999999999999999999985 369999998762 211 2345788877
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC--CCEEEEeCCCCCCCHHH
Q 012523 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR--NRILILDEATASIDSAT 404 (461)
Q Consensus 327 Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~--p~iliLDEpts~LD~~~ 404 (461)
.++++..++.+ ....+...+||||||||++||||++++ |+++||||||++||+.+
T Consensus 68 -------------~~~l~~~~L~~----------~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQFLIDVGLGY----------LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHHHHHcCCCc----------cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 12333333211 024556788999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEeC------CEEEEcc
Q 012523 405 DAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSY------GSFSFNN 449 (461)
Q Consensus 405 ~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~------G~i~~~~ 449 (461)
.+.+.+.+++.. .++|+|++||+++.++.||++++|++ |++||+|
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 999999998864 48999999999999888999999955 5566554
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.4e-36 Score=346.19 Aligned_cols=209 Identities=23% Similarity=0.302 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCC-----------CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC--CceEEEECCEeC
Q 012523 232 RIELEDLKVRYRP-----------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDI 298 (461)
Q Consensus 232 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~--~~G~i~i~g~~i 298 (461)
.+.++||+|..+. +...+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6899999998742 123599999999999999999999999999999999999874 789999999876
Q ss_pred CCCCHHHHhhcceEEccCCcccc-ccHHhhcCCC---C---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCC
Q 012523 299 CSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPL---G---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEG 367 (461)
Q Consensus 299 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Nl~~~---~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g 367 (461)
. ...+++.+|||+|++.+++ .|++||+.+. + ..+++ .+.+.++..++.+. .++.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 3456778999999988775 4999999642 1 12222 24556666666543 356666444
Q ss_pred -CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh--hhhcCEEEEEeC-
Q 012523 368 -ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSY- 442 (461)
Q Consensus 368 -~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~vl~~- 442 (461)
..||||||||++|||+|+.+|++|+||||||+||+.+...+++.|++.. +++|||+++|+++. .+.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999864 47999999999984 466999999996
Q ss_pred CEEEEccc
Q 012523 443 GSFSFNNV 450 (461)
Q Consensus 443 G~i~~~~~ 450 (461)
|+++..|+
T Consensus 1097 G~~v~~G~ 1104 (1470)
T PLN03140 1097 GQVIYSGP 1104 (1470)
T ss_pred CEEEEECC
Confidence 89998887
No 352
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.4e-36 Score=265.34 Aligned_cols=210 Identities=28% Similarity=0.402 Sum_probs=166.7
Q ss_pred EEEEeEEEEeCC-------CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH
Q 012523 233 IELEDLKVRYRP-------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD 305 (461)
Q Consensus 233 i~~~~v~~~y~~-------~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~ 305 (461)
++++|+++.|.. ....+.+.+||++++|+.+|++|.||||||||.|+|+|+.+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 567777665522 2235899999999999999999999999999999999999999999999999987656555
Q ss_pred HhhcceEEccCCcc-cc-----ccHHh-----hcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 306 LRTKLSIIPQEPTL-FR-----GSVRT-----NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 306 ~r~~i~~v~Q~~~l-f~-----~ti~~-----Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
..++|-+++|||.- |+ |++.| |-.+..+...+++.+-++.+|+ +|+.-+- ....||.||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCchh
Confidence 55779999999962 32 22222 1111112234556677777766 3432221 235789999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREE--FPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||+|+||||.-+|+|+|-||+.++||...+.++.+++.++ +.|..-|.|+.++..+++ +|+|+||++|+++|.|.+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999999999999999998887764 348899999999999998 999999999999999985
Q ss_pred h
Q 012523 452 F 452 (461)
Q Consensus 452 ~ 452 (461)
-
T Consensus 235 ~ 235 (267)
T COG4167 235 A 235 (267)
T ss_pred h
Confidence 3
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.9e-36 Score=323.98 Aligned_cols=192 Identities=25% Similarity=0.329 Sum_probs=155.0
Q ss_pred eEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEE-----------ECCEeCCCCCHHH
Q 012523 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLKD 305 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~-----------i~g~~i~~~~~~~ 305 (461)
+++++|+++ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..+-
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 378899643 35899999 8999999999999999999999999999999999997 8998876543211
Q ss_pred --Hhhc----ceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 306 --LRTK----LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 306 --~r~~----i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
.+.. +++++|.|.+|.+|++||+.... ..+++.++++..++.+. ......+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENI-----------LDRDISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 1122 44555566778889999986321 12345556666555433 23344679999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCC
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYG 443 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G 443 (461)
||||++++|++|+|||||++||+.+...+.+.++++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999987558899999999999876 9999999873
No 354
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=264.43 Aligned_cols=206 Identities=23% Similarity=0.356 Sum_probs=176.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECC-EeCCCCCHHHH-hhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-LDICSMGLKDL-RTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g-~~i~~~~~~~~-r~~ 309 (461)
.++++||+.+|++- .+|+++||++.+||.-+|+|||||||||++.+|+|-.+|++|+++++| .|+..++.... |.-
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 48899999999643 499999999999999999999999999999999999999999999999 99999887665 455
Q ss_pred ceEEccCCccccc-cHHhhcCCCC--C----------CC---HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChh
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLG--M----------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~--~----------~~---~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG 373 (461)
||-=+|.|..|.. |++||+.... + .+ .+++.+.+...++.+... .....||-|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhccc
Confidence 9999999999976 9999995321 0 11 124556666666554333 234679999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|||++.|+..++.+|++|+||||++++-.+.....-+++++....+++++|-|++..++. +|+|-||++|++...|.
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeeccc
Confidence 999999999999999999999999999777667788889998889999999999999987 99999999999998887
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.7e-35 Score=317.63 Aligned_cols=198 Identities=23% Similarity=0.316 Sum_probs=149.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 3889999999964 359999999999999999999999999999999999999999999998731 256
Q ss_pred EEccCCccc-cccHHhhcCCC-------------------CCCCHHHHHH------HHH-------HccHHHHHHhCCCc
Q 012523 312 IIPQEPTLF-RGSVRTNLDPL-------------------GMYSDNEIWE------AME-------KCQLKATISRLPML 358 (461)
Q Consensus 312 ~v~Q~~~lf-~~ti~~Nl~~~-------------------~~~~~~~~~~------~~~-------~~~l~~~i~~l~~g 358 (461)
+++|.+... .+++.+++... .+..++.+.. .+. ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 677755321 23454443100 0000000000 000 01123334433 2
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEE
Q 012523 359 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMV 437 (461)
Q Consensus 359 l~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i 437 (461)
+. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 32 13455789999999999999999999999999999999999999999999886 3699999999999876 9999
Q ss_pred EEEeCCEEEEc
Q 012523 438 MVLSYGSFSFN 448 (461)
Q Consensus 438 ~vl~~G~i~~~ 448 (461)
++|++|+++..
T Consensus 224 ~~L~~G~i~~~ 234 (635)
T PRK11147 224 VDLDRGKLVSY 234 (635)
T ss_pred EEEECCEEEEe
Confidence 99999999853
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=303.65 Aligned_cols=203 Identities=27% Similarity=0.393 Sum_probs=160.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|.++|+++.|+ .+.+++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 489999999994 345999999999999999999999999999999999999999999998752 2699
Q ss_pred EEccCCccccc-cHHhhcCCCC-CCC--HHHHHHHH------------------HH-------ccHHHHHHhCCCccccc
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG-MYS--DNEIWEAM------------------EK-------CQLKATISRLPMLLDSS 362 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~-~~~--~~~~~~~~------------------~~-------~~l~~~i~~l~~gl~t~ 362 (461)
|++|++.+.+. |+.+.+.... +.. ..+..++. +. +.+...+..+ |+...
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~ 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence 99999999865 9988875321 100 01111111 00 1222233333 22222
Q ss_pred ccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEe
Q 012523 363 VSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLS 441 (461)
Q Consensus 363 ~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~ 441 (461)
.....+||||||.|++|||||+.+|++|+|||||++||.++-..+.+.|.++ ++ |+|+|||+-+.+.. |++|+.++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 3445789999999999999999999999999999999999999999999865 45 99999999999998 99999999
Q ss_pred CCEEEEccchh
Q 012523 442 YGSFSFNNVNF 452 (461)
Q Consensus 442 ~G~i~~~~~~~ 452 (461)
.|++...+-|+
T Consensus 225 ~g~l~~y~Gny 235 (530)
T COG0488 225 RGKLTPYKGNY 235 (530)
T ss_pred CCceeEecCCH
Confidence 99998755444
No 357
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8e-35 Score=248.98 Aligned_cols=194 Identities=23% Similarity=0.342 Sum_probs=163.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEeCCCCCHHHHhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~i~~~~~~~~r~ 308 (461)
.+.++||+.+.++ ...|.|+|++|.+||++-+.||||||||||+.-+.|.+.++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 3678999977754 45899999999999999999999999999999999999885 89999999999887754 67
Q ss_pred cceEEccCCccccc-cHHhhcCCCCC------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
++|+++||+.+|+- +|.+|+.+.-+ ........++++.+++.+..+.| .+||||||-|+++-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 89999999999975 99999975322 22333556778888877777666 56899999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCcEEEEEccCchhhhhcCEEEEE
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREE--FPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
|+|+..|+.++||||+|.||..-+..+.+...+. ..+..++.|||+...+..-.||+-|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999888888887653 2478899999999988865555544
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.1e-35 Score=338.91 Aligned_cols=197 Identities=23% Similarity=0.204 Sum_probs=161.6
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC----CCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 322 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~----~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 322 (461)
+.+|+|+|+++++||+++|+||||||||||+|+|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999886543 3467789999999888864
Q ss_pred -cHHhhcCCCC----------CCCHHHH-----HHHHHHccHHHHHHhCCCcccccccC-CCCCCChhHHHHHHHHHHhh
Q 012523 323 -SVRTNLDPLG----------MYSDNEI-----WEAMEKCQLKATISRLPMLLDSSVSD-EGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 323 -ti~~Nl~~~~----------~~~~~~~-----~~~~~~~~l~~~i~~l~~gl~t~~~~-~g~~lSgGq~Qrl~lARal~ 385 (461)
|++||+.+.. ..++++. ..+++..++ .+-.+|.+|+ ....||||||||++||||++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999996421 1222221 112333333 3345777764 46789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCc-hhh-hhcCEEEEEeCCEEEEccch
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRV-PTI-TDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~-~~~-~~~d~i~vl~~G~i~~~~~~ 451 (461)
.+|++++|||||++||+.+...+.+.|++..+ ++|+|+++|++ +.+ +.+|++++|++|+++..|+.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~ 295 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPA 295 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCH
Confidence 99999999999999999999999999998643 78999999997 344 45999999999999999874
No 359
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=258.21 Aligned_cols=208 Identities=28% Similarity=0.323 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC--CCCCceEEEECCEeCCCCCHHH-Hhh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKD-LRT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl--~~~~~G~i~i~g~~i~~~~~~~-~r~ 308 (461)
.++++|+..+-.+. +.+|+++||+|++||+.+|.||||||||||.+.|+|. |++++|+|.+||+||.++++.+ -|.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47899999887533 3699999999999999999999999999999999996 5889999999999999999876 456
Q ss_pred cceEEccCCccccc-cHHhhcCCCC----C------CCHHHHHHHHHHccHHH-HHHhCCCcccccccCCCCCCChhHHH
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPLG----M------YSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~~----~------~~~~~~~~~~~~~~l~~-~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
-|..-+|.|.=++| ++.+-|.... . ...+++.++++..++++ ++++ .++ ..+|||||+
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R-------~vN---~GFSGGEkK 151 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER-------YVN---EGFSGGEKK 151 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc-------ccC---CCcCcchHH
Confidence 69999999998988 8888774211 1 11345667777777766 3222 222 458999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhc--CEEEEEeCCEEEEccc
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDS--DMVMVLSYGSFSFNNV 450 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~--d~i~vl~~G~i~~~~~ 450 (461)
|.-|+.+++.+|++.|||||-||||.++-+.+.+.+..++ ++.++++|||.-..+.+. |++.||-+|+|+.+|-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999998865 489999999999988875 9999999999998775
No 360
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.7e-34 Score=262.90 Aligned_cols=183 Identities=24% Similarity=0.339 Sum_probs=152.0
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
.++|+||||++++||.+||+|+||||||||+|+|+|.|+|++|+|.++|.--.-+.. ..|+-| +.|.||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 469999999999999999999999999999999999999999999999954322211 233322 358899
Q ss_pred hcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 012523 327 NLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (461)
Q Consensus 327 Nl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~ 399 (461)
|+.+.. -.+ ++...+..+-++|.+|++. | .+++|.|++-||++|-|.-.+|+|||+||..+.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 986421 123 3445566777778877753 3 478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 400 IDSATDAILQRIIREE-FPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
.|+.-.++-.+.+++. .+++|+|+|||+++.++. |||+++|++|+|+..|..
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCH
Confidence 9999888888888886 678999999999999987 999999999999998873
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2.4e-34 Score=252.01 Aligned_cols=136 Identities=42% Similarity=0.716 Sum_probs=123.2
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc-cHHhhc
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNL 328 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Nl 328 (461)
|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+....++.++|++|++.+|.+ |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998888999999999999999877 69999
Q ss_pred CCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 329 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
..++++.++++..++.+ ..++.++.+...||+|||||++||||++++|+++||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23556777777777654 24667778889999999999999999999999999999997
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.2e-34 Score=332.89 Aligned_cols=202 Identities=23% Similarity=0.269 Sum_probs=161.5
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEeCCCCCHHHHhhcceEEccCCcccc-c
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-G 322 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 322 (461)
..+|+|+|+.++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999986653 2678999999988775 5
Q ss_pred cHHhhcCCCCC-------------CCHH----------HHHHHHHH---c------cHHHHHHh--CCCcccccccC-CC
Q 012523 323 SVRTNLDPLGM-------------YSDN----------EIWEAMEK---C------QLKATISR--LPMLLDSSVSD-EG 367 (461)
Q Consensus 323 ti~~Nl~~~~~-------------~~~~----------~~~~~~~~---~------~l~~~i~~--l~~gl~t~~~~-~g 367 (461)
|++||+.+... .+.+ ++...++. . -.+..++. +.+-.||.+|+ ..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999964210 0111 11000010 0 01233333 33445777865 44
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCch--hhhhcCEEEEEeCC
Q 012523 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVP--TITDSDMVMVLSYG 443 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~--~~~~~d~i~vl~~G 443 (461)
..||||||||++|||+++.+|++++|||||+|||+.+...+.+.|++.. .++|+|+++|+++ ..+.+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 7899999999999999999999999999999999999999999999864 3789999999973 45569999999999
Q ss_pred EEEEccch
Q 012523 444 SFSFNNVN 451 (461)
Q Consensus 444 ~i~~~~~~ 451 (461)
+++..|+.
T Consensus 415 ~ivy~G~~ 422 (1470)
T PLN03140 415 QIVYQGPR 422 (1470)
T ss_pred eEEEeCCH
Confidence 99999984
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-34 Score=248.24 Aligned_cols=212 Identities=24% Similarity=0.376 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCE-----eCCCCCHHH-
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL-----DICSMGLKD- 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~-----~i~~~~~~~- 305 (461)
-+++.++|+.|++.. -.+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.+.-. ++-.++..+
T Consensus 6 LL~V~~lsk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 488999999996543 789999999999999999999999999999999999999999998652 333333333
Q ss_pred ---HhhcceEEccCCcc-ccc--cHHhhcC----C-C-CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChh
Q 012523 306 ---LRTKLSIIPQEPTL-FRG--SVRTNLD----P-L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (461)
Q Consensus 306 ---~r~~i~~v~Q~~~l-f~~--ti~~Nl~----~-~-~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG 373 (461)
+|..-|+|.|+|.= ... |--.|+- . + +.+. .++. ...+|+++..-. .+.+.+....+|||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG--~iR~-----~a~~WL~~VEI~-~~RiDD~PrtFSGG 155 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG--NIRA-----EAQDWLEEVEID-LDRIDDLPRTFSGG 155 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh--hHHH-----HHHHHHHhcccC-cccccCcccccchH
Confidence 45668999999941 111 1122331 0 1 0111 1111 123455544321 34566777899999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
++||+.|||-|...|+++++||||.+||...+.+++++++.+-. +-.+++|||++...+. +||.+||++|+++|+|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999999988543 6799999999999987 99999999999999998
Q ss_pred hhh
Q 012523 451 NFC 453 (461)
Q Consensus 451 ~~~ 453 (461)
+-+
T Consensus 236 TDr 238 (258)
T COG4107 236 TDR 238 (258)
T ss_pred ccc
Confidence 643
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.3e-33 Score=307.53 Aligned_cols=210 Identities=19% Similarity=0.236 Sum_probs=155.2
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC---CCCceEEEECCEeCCC--CCH---
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV---EPENGRILIDGLDICS--MGL--- 303 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~---~~~~G~i~i~g~~i~~--~~~--- 303 (461)
.|+++|++|+|++ ..+|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 177 ~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 177 DIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 5999999999963 34999999999999999999999999999999999864 5789999865554321 111
Q ss_pred ---------HHHhhcceEEccCCccccccHHhhcCCC--CCCCH----HHHHHHHHHccH----------HHHHHhCCCc
Q 012523 304 ---------KDLRTKLSIIPQEPTLFRGSVRTNLDPL--GMYSD----NEIWEAMEKCQL----------KATISRLPML 358 (461)
Q Consensus 304 ---------~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~--~~~~~----~~~~~~~~~~~l----------~~~i~~l~~g 358 (461)
..+++.+++++|++.+...+..+|.... ...+. +++.++++..++ ...+..+ |
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l--g 332 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL--S 332 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--C
Confidence 1134558899998765443444443211 01111 222222222221 1223332 2
Q ss_pred cc-ccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCE
Q 012523 359 LD-SSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDM 436 (461)
Q Consensus 359 l~-t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~ 436 (461)
++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCE
Confidence 32 1123344689999999999999999999999999999999999999999999886 6799999999999877 999
Q ss_pred EEEEeCCEEEE
Q 012523 437 VMVLSYGSFSF 447 (461)
Q Consensus 437 i~vl~~G~i~~ 447 (461)
|++|++|+++.
T Consensus 411 i~~l~~g~i~~ 421 (718)
T PLN03073 411 ILHLHGQKLVT 421 (718)
T ss_pred EEEEECCEEEE
Confidence 99999999974
No 365
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=249.72 Aligned_cols=187 Identities=25% Similarity=0.410 Sum_probs=157.5
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++.+|++...+ ...++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|.++|.++.... +.+++..-|
T Consensus 3 L~a~~L~~~R~--e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERG--ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhccC--cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 45677776553 345899999999999999999999999999999999999999999999999887643 445778888
Q ss_pred EccCCccccc-cHHhhcCCCC----CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
+...+-+-.. |++||+.|.. ..+++.+++|++.+++..+ ..+|. .+||-||++|+||||-.+..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~----------~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPV----------GQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccch----------hhcchhHHHHHHHHHHHcCC
Confidence 8888877654 9999998642 2456889999999998764 33443 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhhh
Q 012523 388 NRILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITD 433 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~ 433 (461)
+|++||||||++||.+.+..+-..+... .++-.||..||.+-.+..
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 9999999999999999999998888774 457799999999766543
No 366
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.5e-33 Score=298.71 Aligned_cols=211 Identities=26% Similarity=0.381 Sum_probs=176.5
Q ss_pred ccEEEEeEEEEeCCC---CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC---CceEEEECCEeCCCCCHH
Q 012523 231 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLK 304 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~---~~G~i~i~g~~i~~~~~~ 304 (461)
..++++|+++.-++. .+.+|+|||.+++|||..||.||||||||||+++|+|-.++ .+|+|.+||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 368999999887654 35699999999999999999999999999999999999975 79999999954 3567
Q ss_pred HHhhcceEEccCCccccc-cHHhhcCCC------CCCCH----HHHHHHHHHccHHHHHHhCCCcccccccC-CCCCCCh
Q 012523 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPL------GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSD-EGENWSV 372 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~------~~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~-~g~~lSg 372 (461)
.+++..|||+||..+++. ||+|++.+. ...+. +.+.+.++..++.+. -||.+|. ..+.+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCcccc
Confidence 889999999999998865 999998542 12232 334555555555432 3666763 3478999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh--hhhcCEEEEEeCCEEEEcc
Q 012523 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 373 Gq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~vl~~G~i~~~~ 449 (461)
|||+|++||.-++.||++|+|||||||||..+..++.+.|+++. +|||||+.=|+++. .+..|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999964 48999999999964 4569999999999999999
Q ss_pred ch
Q 012523 450 VN 451 (461)
Q Consensus 450 ~~ 451 (461)
+.
T Consensus 254 ~~ 255 (613)
T KOG0061|consen 254 SP 255 (613)
T ss_pred CH
Confidence 74
No 367
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-33 Score=259.75 Aligned_cols=195 Identities=24% Similarity=0.363 Sum_probs=149.7
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEc-cCCccc-cccHH
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLF-RGSVR 325 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~ti~ 325 (461)
++.+|+||+|++|++++++|+|||||||++|+|.|++.|++|.|.++|.+--+ +.+++-+++++|. |...+. .-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 48999999999999999999999999999999999999999999999987544 3344445566653 433322 11222
Q ss_pred hhcCCC---CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH
Q 012523 326 TNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402 (461)
Q Consensus 326 ~Nl~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~ 402 (461)
|-+... .+..+++..+-++ .+.+-| +++..+......||-|||.|.-||.||+++|++|+|||||-+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 222110 1233443332211 112211 345555566688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 403 ATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 403 ~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
.++..+.+.++++. .++||+..||.++.+.. ||||+.|+.|+++.+|.
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence 99999999998853 48999999999998876 99999999999999876
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=279.79 Aligned_cols=194 Identities=20% Similarity=0.280 Sum_probs=164.0
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
.-++++|+++.|+++ +++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.-. -++
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 359999999999654 56999999999999999999999999999999999999999999987542 269
Q ss_pred eEEccCC-cccc-ccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 311 SIIPQEP-TLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 311 ~~v~Q~~-~lf~-~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
||.+|+. .++. .|+.|++.-.. ...+.+++..+...++...-. ......||||||-|+.||+.++.+
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccC
Confidence 9999988 3443 38999886432 233677777887777654322 233467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEcc
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNN 449 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~ 449 (461)
|.+|||||||++||.++...+.++|.++ +-|+|+|||+...++. |++|+.+++ ++.+..
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~ 517 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFE 517 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcC
Confidence 9999999999999999999999999886 4699999999999998 999999998 776654
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=6.5e-33 Score=263.74 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=125.5
Q ss_pred CCccccceeEEeeCCcEEEEEcCCCCCHHHHH-HHHccCCCCCceEEEEC-C------EeCCCCC-H--HHHh-hcceEE
Q 012523 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI-SALFRLVEPENGRILID-G------LDICSMG-L--KDLR-TKLSII 313 (461)
Q Consensus 246 ~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll-~ll~gl~~~~~G~i~i~-g------~~i~~~~-~--~~~r-~~i~~v 313 (461)
+..+|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+. + ..+..+. + ...+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 34599999999999999999999999999996 4442 13433221 0 0000000 0 0111 123344
Q ss_pred ccCCccc-c--ccHH---hhcCCCCC-CCHHHHHHHHHHccHHHHHHhCCCcccc-cccCCCCCCChhHHHHHHHHHHhh
Q 012523 314 PQEPTLF-R--GSVR---TNLDPLGM-YSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 314 ~Q~~~lf-~--~ti~---~Nl~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~gl~t-~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
.|++... + .++. +...+... ...+...+ . .+.+..+ |+.. .......+||||||||++||||++
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE---R---LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH---H---HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 4444321 1 1211 11111000 00000100 0 1223332 2332 245667889999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEE------eCCEEEEcc
Q 012523 386 KRN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGSFSFNN 449 (461)
Q Consensus 386 ~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl------~~G~i~~~~ 449 (461)
.+| ++|||||||++||+.+.+.+.+.+++.. .+.|+|+|||+++.++.||++++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 998 5999999999999999999999998753 478999999999998889999999 999999986
No 370
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=3.1e-29 Score=251.48 Aligned_cols=411 Identities=15% Similarity=0.188 Sum_probs=264.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012523 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLI----VAIPTVIVAKYIQGYYLSSARELMRMNGTTKA 89 (461)
Q Consensus 14 srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (461)
+++++|+........+...++...++.++.....+.-.+-.... ++..++.+...+.+.+.++..++..+.+.+.+
T Consensus 221 ~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g 300 (728)
T KOG0064|consen 221 NSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKG 300 (728)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence 46888888877777777766666666655443333322222111 11122222223334444444444444555677
Q ss_pred cHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhC---
Q 012523 90 PIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV----LLP--- 162 (461)
Q Consensus 90 ~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~--- 162 (461)
.+...-+..+.+-++|..|+..+...++.++..+..............|+...-+++.--+....+.++. +..
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~ 380 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLA 380 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccC
Confidence 7777888899999999999999988888877777665554444444455544333333222221111110 000
Q ss_pred --CC---ccHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---------CC----CC-CCCc
Q 012523 163 --GK---HLPGF--VGLSLS---YALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL---------PP----EP-PAII 218 (461)
Q Consensus 163 --g~---~~~g~--~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~---------~~----~~-~~~~ 218 (461)
+. -..+. .-.+.+ +....+.....+...+.++.+....-.|+++.++. .. +. +...
T Consensus 381 s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~ 460 (728)
T KOG0064|consen 381 SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRT 460 (728)
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccC
Confidence 11 01111 111111 11222233333444555555555666777755420 00 00 0000
Q ss_pred ----cCCCCCC---CCCCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE
Q 012523 219 ----EETKPPA---SWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (461)
Q Consensus 219 ----~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i 291 (461)
....+.+ .......|.++|+-.--|..+ .+...++|+|++|-.+.|+||||||||+|+++|.|+||...|..
T Consensus 461 ~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L 539 (728)
T KOG0064|consen 461 IDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL 539 (728)
T ss_pred ccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence 0000000 001234589999977666544 48999999999999999999999999999999999999988877
Q ss_pred EECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCC--------CCCCHHHHHHHHHHccHHHHHHhCCCcccccc
Q 012523 292 LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 363 (461)
Q Consensus 292 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~ 363 (461)
.+.- +.+|-|+||.|+.--||+||-+-+- ..++|.++.+.+..+.+++.+++ ..|+|...
T Consensus 540 ~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da~~ 607 (728)
T KOG0064|consen 540 SIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDAVR 607 (728)
T ss_pred ecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhhhc
Confidence 6532 2459999999998888999987431 24678899999999999887665 34565543
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEE
Q 012523 364 SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 364 ~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
. =-.-||||+|||+++||.++++|+.-+|||.||++-++.|..+.++.++. +.+.|-||||++..+.....+-.
T Consensus 608 d-Wkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 608 D-WKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred c-HHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 2 12358999999999999999999999999999999999999999998774 78999999999988766555554
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=1.7e-31 Score=248.53 Aligned_cols=164 Identities=21% Similarity=0.301 Sum_probs=131.4
Q ss_pred cceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCc---------eEEEECCEeCCCCCHHHHhhcceEEccCCcccc
Q 012523 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---------GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (461)
Q Consensus 251 ~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~---------G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 321 (461)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.++|.+... ...+.++++|+|+|..+.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCce
Confidence 6789999999 999999999999999999999986653 467778876643 223578999999998771
Q ss_pred ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh----cCCCEEEEeCCC
Q 012523 322 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILILDEAT 397 (461)
Q Consensus 322 ~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~----~~p~iliLDEpt 397 (461)
+ ....+++.++++. ++-. ......||||||||++|||+++ .+|++++|||||
T Consensus 90 ~----------~~~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 S----------IISQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred e----------EEehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 1 0012344444444 1112 2344679999999999999986 567999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeC
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
++||+.....+.+.+++..++.|+|++||+++.++.||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999987778899999999999988999999854
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2e-30 Score=250.06 Aligned_cols=191 Identities=24% Similarity=0.288 Sum_probs=134.9
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc-----c-CC----CCCce-----------EEEECCEeCCCCCHH---
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-----R-LV----EPENG-----------RILIDGLDICSMGLK--- 304 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~-----g-l~----~~~~G-----------~i~i~g~~i~~~~~~--- 304 (461)
-|+|++++|+.|+.++|+|+||||||||++-++ + +. .|..+ -|.+|..++..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998552 1 11 12222 355666555432111
Q ss_pred -------HHhh----------------cceEEccCCccc-cccHHhhcCCCCCCC-HHHHHHHHHHccHHHHHHhCCCcc
Q 012523 305 -------DLRT----------------KLSIIPQEPTLF-RGSVRTNLDPLGMYS-DNEIWEAMEKCQLKATISRLPMLL 359 (461)
Q Consensus 305 -------~~r~----------------~i~~v~Q~~~lf-~~ti~~Nl~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~gl 359 (461)
++|+ .+.|..++...+ ..|+.||+.++.... .++..++++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v-----------gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV-----------GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------CC
Confidence 0111 122333333222 335555554332111 11222233333 34
Q ss_pred cc-cccCCCCCCChhHHHHHHHHHHhhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhc
Q 012523 360 DS-SVSDEGENWSVGQRQLFCLGRVLLKR---NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDS 434 (461)
Q Consensus 360 ~t-~~~~~g~~lSgGq~Qrl~lARal~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~ 434 (461)
.. ..++...+|||||+||++|||+|+++ |+++||||||++||+...+.+.+.+++.. .+.|+|+|||+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 35677789999999999999999996 79999999999999999999999998864 478999999999999999
Q ss_pred CEEEEE------eCCEEEEccc
Q 012523 435 DMVMVL------SYGSFSFNNV 450 (461)
Q Consensus 435 d~i~vl------~~G~i~~~~~ 450 (461)
|++++| ++|+|+++|.
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCC
Confidence 999999 8999999885
No 373
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=289.68 Aligned_cols=208 Identities=21% Similarity=0.343 Sum_probs=180.0
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC-CHHHHhhc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTK 309 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~-~~~~~r~~ 309 (461)
..+..+|+++.|+.... +.+++|+.|++||+.|+.|+|||||||++|++.|..+|++|++.++|.++..- +..+.+++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999976554 89999999999999999999999999999999999999999999999998753 44458999
Q ss_pred ceEEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
+||+||+..+++. |.||.+.+.. .... +.+.+.++..++.+..+. ..+++|||+|+||++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-----------~~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-----------QVRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-----------chhhCCCcchhhHHHH
Confidence 9999999998865 9999996532 2222 235566666666654433 2468999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
-|++.+|++++|||||+|+||.+++.+++.+++..+ ++.+|+.||.++..+. |||+.+|.+|++..-|+
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs 781 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGS 781 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecC
Confidence 999999999999999999999999999999999766 4599999999999998 99999999999998887
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=226.52 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=149.0
Q ss_pred EEEEeEEEEeC-----CCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCE----eCCCCCH
Q 012523 233 IELEDLKVRYR-----PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL----DICSMGL 303 (461)
Q Consensus 233 i~~~~v~~~y~-----~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~----~i~~~~~ 303 (461)
+.++|++++|. +-.-++++|+||+++.||++++-|||||||||+++.|.+-|.|++|+|.+.-. |+....+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 77888887772 11236999999999999999999999999999999999999999999998432 3333344
Q ss_pred HH----HhhcceEEccCCcccc-cc----HHhhcC-CCCCCC--HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCC
Q 012523 304 KD----LRTKLSIIPQEPTLFR-GS----VRTNLD-PLGMYS--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (461)
Q Consensus 304 ~~----~r~~i~~v~Q~~~lf~-~t----i~~Nl~-~~~~~~--~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lS 371 (461)
.+ .|+.||||+|---..+ -+ +.|-+. .+-+.. .++....+.+.++.+-+-.|| ..++|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------CcccC
Confidence 32 3456999999533222 12 222221 111111 122233444444444444443 46899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeC
Q 012523 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSY 442 (461)
Q Consensus 372 gGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~ 442 (461)
|||+||+.|||.+..+-+||+|||||++||..+.+.+.+.+.+.+ +|..++=|=|+-+.-+. |||++-|..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998854 58999999999888776 899988753
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=9.7e-30 Score=244.63 Aligned_cols=192 Identities=21% Similarity=0.325 Sum_probs=133.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc----------------cCCCCCce------
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------------RLVEPENG------ 289 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~----------------gl~~~~~G------ 289 (461)
.|+++|.- +|.+ ..++++++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 3 ~i~~~nfk-sy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGFK-SYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCcc-Cccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 36777752 4642 23777776 8999999999999999999998 44445555
Q ss_pred --EEEECCEeCC-CC--CHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHH--HhCCCc----
Q 012523 290 --RILIDGLDIC-SM--GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI--SRLPML---- 358 (461)
Q Consensus 290 --~i~i~g~~i~-~~--~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i--~~l~~g---- 358 (461)
+|.+++.+-. .. ....+++.++++||++.++.. ..+.+++..+++..++...- ...++|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 5555542211 00 112345567777777655431 12344555555554442210 001111
Q ss_pred ---ccccccCCCCCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 012523 359 ---LDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI 431 (461)
Q Consensus 359 ---l~t~~~~~g~~lSgGq~Qrl~lARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 431 (461)
+.....+.+..||||||||++||||++ ++|++++|||||++||+.+.+.+.+.+++..+++|+|+++|+.+..
T Consensus 145 l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~ 224 (243)
T cd03272 145 LTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELL 224 (243)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 122345677899999999999999996 4689999999999999999999999999876678999999998888
Q ss_pred hhcCEEEEEe
Q 012523 432 TDSDMVMVLS 441 (461)
Q Consensus 432 ~~~d~i~vl~ 441 (461)
+.||++++|+
T Consensus 225 ~~~d~i~~l~ 234 (243)
T cd03272 225 EVADKFYGVK 234 (243)
T ss_pred hhCCEEEEEE
Confidence 8899999985
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=1.4e-29 Score=238.77 Aligned_cols=191 Identities=16% Similarity=0.084 Sum_probs=138.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEee-CCcEEEEEcCCCCCHHHHHHHHcc-CCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFK-EGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~-~Ge~v~ivG~sGsGKSTll~ll~g-l~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
.|+++|+. .|.+. ++++|+.. +|++++|+||||||||||+++|++ +|.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58899987 66432 55666644 589999999999999999999994 666665655543 11222333445667
Q ss_pred ceEEccCCccccccHHhhcCCCCCCCHHHHHHH--HHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc-
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEA--MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK- 386 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~--~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~- 386 (461)
|++++|++... ..+.... ..+.++..+. ++..+ +++.+.....+|||||+||+++|||++.
T Consensus 78 v~~~f~~~~~~----~~~~r~~-gl~~~~~~~~~~l~~g~-----------l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKK----YRVERSR-GLDYDQFTRIVLLPQGE-----------FDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeE----EEEEEec-CCCHHHHHHhhhhhhcc-----------hHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 99999987321 1222211 2333333222 12222 3444456678899999999999999985
Q ss_pred ---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 387 ---------RNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 387 ---------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
+|++++|||||++||+.+...+.+.+++..+ ++|+|+|||+++.+.. ||+++++++|..
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 5789999999999999999999999988754 7899999999998876 899999999863
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.6e-28 Score=245.74 Aligned_cols=220 Identities=25% Similarity=0.380 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH-HHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~-~~r~~i 310 (461)
.++++|++.. . .++|+||++++||++||.|--|||+|-++++|.|..++.+|+|.+||+++.--++. ..+..|
T Consensus 263 ~l~v~~l~~~----~--~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG----G--KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC----C--ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 4777877632 1 58999999999999999999999999999999999999999999999998877755 677889
Q ss_pred eEEccCCc---cc-cccHHhhcCCCC--CCCHH-HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 311 SIIPQEPT---LF-RGSVRTNLDPLG--MYSDN-EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 311 ~~v~Q~~~---lf-~~ti~~Nl~~~~--~~~~~-~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
+|||.|-. +| ..+|++|+.+.. ..+.. -+...-+..-..+++..+.-.-. .......+||||.+||+.|||.
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~-s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP-SPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccC-CccchhhcCCchhhhhHHHHHH
Confidence 99999764 55 559999997531 11100 23333444445566666532211 1224557899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEE--ccchhhHHHhH
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSF--NNVNFCVQRII 458 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~--~~~~~~~~~~~ 458 (461)
|..+|++|||||||-|+|.-+...|.+.++++. +|++||+||-.+..+- .||||+||.+|+|+. .+...-+.++|
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~tee~im 494 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIM 494 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccCCHHHHH
Confidence 999999999999999999999999999999864 5899999999988766 599999999999986 33335566666
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=3.4e-28 Score=235.11 Aligned_cols=181 Identities=19% Similarity=0.281 Sum_probs=133.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCC-ceEEEECCE-eCCCCC--HHHHhhcceEEccCCc---------cc-cccHH
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGL-DICSMG--LKDLRTKLSIIPQEPT---------LF-RGSVR 325 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~-~G~i~i~g~-~i~~~~--~~~~r~~i~~v~Q~~~---------lf-~~ti~ 325 (461)
..+++|+||||||||||+++|++++.|. .|+++..|. ++-... ....+.++++++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568888776 432111 1122458999999863 12 34777
Q ss_pred hhcCCCC---------CCCHHHHHHHHHHccHHH----H------HHhCCCcccccccCCCCCCChhHHHHHHHHHHhh-
Q 012523 326 TNLDPLG---------MYSDNEIWEAMEKCQLKA----T------ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL- 385 (461)
Q Consensus 326 ~Nl~~~~---------~~~~~~~~~~~~~~~l~~----~------i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~- 385 (461)
+|+.... ....+++.++++.+++.. + +..+-. ..........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN-MGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH-hHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 7774321 112355666777766530 0 000000 002233456789999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEe
Q 012523 386 ---KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLS 441 (461)
Q Consensus 386 ---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~ 441 (461)
.+|+++++||||++||+.+.+.+.+.+++..++.|+|+|||+.+.++.||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998877889999999999999999998764
No 379
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=6.5e-29 Score=217.83 Aligned_cols=202 Identities=20% Similarity=0.292 Sum_probs=166.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++||+..- -|-.+|..+..||++=+|||||||||||+-.++|+.+ .+|+|.++|.++..++..++.++-+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHH
Confidence 5677776432 3777899999999999999999999999999999975 69999999999999999999999999
Q ss_pred EccCC-ccccccHHhhcCCCCCCC--HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc---
Q 012523 313 IPQEP-TLFRGSVRTNLDPLGMYS--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK--- 386 (461)
Q Consensus 313 v~Q~~-~lf~~ti~~Nl~~~~~~~--~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~--- 386 (461)
+.|+. ..|...|...+.+..+.. -.++.+++++.+++ ..++.....|||||.||+-+|-..+.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~-----------DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhccc-----------chhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 98865 467888999988654321 23444455554443 33445567899999999999998886
Q ss_pred --CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch-hhhhcCEEEEEeCCEEEEccchh
Q 012523 387 --RN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVP-TITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 387 --~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|| ++|++|||-++||...+..+-+.+.+.. .+.+||+.+|+++ +++++|+++.+..|++...|..-
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~ 217 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRRE 217 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchh
Confidence 33 7999999999999999888888887753 5899999999996 78889999999999999999843
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=1.5e-28 Score=248.07 Aligned_cols=196 Identities=23% Similarity=0.325 Sum_probs=161.5
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
.-+-++||+|.|+++. .+++++||-|..++++|+|||||+|||||+|+++|...|..|.|.-.-+. ++
T Consensus 388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 3589999999997554 79999999999999999999999999999999999999999999754332 23
Q ss_pred eEEccC---CccccccHHhhcCC-CC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 311 SIIPQE---PTLFRGSVRTNLDP-LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 311 ~~v~Q~---~~lf~~ti~~Nl~~-~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
++..|. ..-++.+..++... +. ....+++...+...|+....+..|. .+||+|||.|+++||..+
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHh
Confidence 333333 22356677777643 22 2456778888999998765555552 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEE-ccc
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSF-NNV 450 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~-~~~ 450 (461)
++|.+|+|||||++||.++-..+.++|.++ .-++|+|||+...+.+ +++|++.++|.+.. .|.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCcc
Confidence 999999999999999999999999999886 4699999999999988 89999999998864 443
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=7.6e-28 Score=225.26 Aligned_cols=163 Identities=24% Similarity=0.251 Sum_probs=127.0
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHH----ccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC-----cccc-c
Q 012523 253 ITCTFKEGTRVGVVGRTGSGKTTLISAL----FRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-----TLFR-G 322 (461)
Q Consensus 253 i~l~i~~Ge~v~ivG~sGsGKSTll~ll----~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~lf~-~ 322 (461)
.++++.+| +++|+||||||||||+++| .|..+|..|.+..+...+.. ...+..+++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34567777 9999999999999999999 49999988877622222222 23456899999998 3332 2
Q ss_pred cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH------HHHHHHhhcCCCEEEEeCC
Q 012523 323 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL------FCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 323 ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr------l~lARal~~~p~iliLDEp 396 (461)
|+.+|+.+. .++++.+. + .+...+||+||+|| +++|||++.+|++++||||
T Consensus 92 ~~~~~~~~~---~~~~~~~~---------~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFC---HQGESNWP---------L-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeee---chHHHHHH---------H-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 888888642 12222211 1 33457899999996 7999999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeC
Q 012523 397 TASIDSATDA-ILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 397 ts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
|++||+.+.. .+.+.+++..+ ++|+|++||+++.+..||++++|++
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999988 99999988654 6899999999998888999999965
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=4.5e-28 Score=228.02 Aligned_cols=184 Identities=20% Similarity=0.236 Sum_probs=133.6
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHh-hcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r-~~i 310 (461)
.|+++|.. .|. ...+++++++ ++++|+|||||||||++++|. .++|.+.. ..| +++
T Consensus 5 ~l~l~nfk-~~~--~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYA--GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKL 61 (212)
T ss_pred EEEEECcc-cCC--CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhH
Confidence 47888875 674 3348898887 899999999999999999997 33454332 223 579
Q ss_pred eEEccCCccccc-cHHhhcCCCCCCCH-HHH-----HHHHHH----ccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGMYSD-NEI-----WEAMEK----CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~~~~-~~~-----~~~~~~----~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
++++|+..+++. |.++++.++..... +.+ ...-.. .+-...+..+|++.++. ...||+|||||++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~----~~~lS~G~~~r~~ 137 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN----ISNLSGGEKTLSS 137 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc----hhhcCHHHHHHHH
Confidence 999999877654 77777654322110 000 000000 00011233345555544 3579999999999
Q ss_pred HHHHhhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeC
Q 012523 380 LGRVLLK----RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 380 lARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
||||++. +|++++|||||++||+.+...+.+.+++..++.|+|++||+.+..+.||++++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999964 58999999999999999999999999998778899999999888888999999854
No 383
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=1.9e-26 Score=253.59 Aligned_cols=196 Identities=28% Similarity=0.369 Sum_probs=163.6
Q ss_pred CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC--CceEEEECCEeCCCCCHHHHhhcceEEccCC-cccc
Q 012523 245 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFR 321 (461)
Q Consensus 245 ~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~ 321 (461)
+.+.+|+||+=-++||-.+||+|+||||||||+++|+|=..- .+|+|++||.+..+ +..++.+|||.|+. ++-.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 455699999999999999999999999999999999987543 48999999998753 67889999999866 4556
Q ss_pred ccHHhhcCCC------CCCCHHH----HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC-CE
Q 012523 322 GSVRTNLDPL------GMYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN-RI 390 (461)
Q Consensus 322 ~ti~~Nl~~~------~~~~~~~----~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p-~i 390 (461)
-||||-|.+. .+.++++ ++++++..+++++- |..||..|..||..||+|+.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 6999998542 2333332 46667777666554 44588888999999999999999999999 88
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh--hhhcCEEEEEeC-CEEEEccc
Q 012523 391 LILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSY-GSFSFNNV 450 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~vl~~-G~i~~~~~ 450 (461)
|.|||||||||.++...+++.+++.. .|+||+..=|+++. .+..|+++.|++ |+.|..|+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecC
Confidence 88999999999999999999999864 59999999999974 577999999966 77887665
No 384
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=4.6e-26 Score=219.67 Aligned_cols=202 Identities=18% Similarity=0.217 Sum_probs=136.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEe--CC-----CCCHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--IC-----SMGLK 304 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~--i~-----~~~~~ 304 (461)
.|+++|. .+|.+.. ++...+ ..++|+||||||||||+.+|+++..+..|+++.++.+ +. ..+..
T Consensus 3 ~i~l~nf-~~~~~~~-------~~~~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGRH-------VIGPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCCe-------eecCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 4777875 3453211 122233 4999999999999999999999998888888755421 11 11111
Q ss_pred HHhhcceEEccCCc--cccccHHhhcC---CC-CCCCHHHHHHHHHHccHHHHHHh--CCCccccccc---------CCC
Q 012523 305 DLRTKLSIIPQEPT--LFRGSVRTNLD---PL-GMYSDNEIWEAMEKCQLKATISR--LPMLLDSSVS---------DEG 367 (461)
Q Consensus 305 ~~r~~i~~v~Q~~~--lf~~ti~~Nl~---~~-~~~~~~~~~~~~~~~~l~~~i~~--l~~gl~t~~~---------~~g 367 (461)
...-.+.+..|++. ++..++++... .. ...+.+++.+.++.++++.+... +++|--+.+. ...
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 22333555555432 33334443321 11 23456677788888887422111 1222222221 223
Q ss_pred CCCChhHHHHHHHHHHhhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhhcCEEEEEeC
Q 012523 368 ENWSVGQRQLFCLGRVLLKR----NRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
.+||+|||||++||||++.+ |+++||||||++||+.+...+.+.+++..+ +.|+|+|||+.+.++.||++++|..
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 68999999999999999864 899999999999999999999999998754 7899999999999988999999864
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=218.55 Aligned_cols=213 Identities=24% Similarity=0.360 Sum_probs=167.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeC-CCCCHHHHhh-
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI-CSMGLKDLRT- 308 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i-~~~~~~~~r~- 308 (461)
.-++++|++..-+. +...++++||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ..+++.+.|+
T Consensus 256 ~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 35999999976432 23589999999999999999999999999999999999999999999999997 6677777665
Q ss_pred cceEEccCCc----cccccHHhhcCCCCC----------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 309 KLSIIPQEPT----LFRGSVRTNLDPLGM----------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 309 ~i~~v~Q~~~----lf~~ti~~Nl~~~~~----------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
.++|||.|.+ ....|+.||+.+... .+..++.+.. .+.++++.-- .........+||||+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~fdVr-~~~~~~~a~~LSGGN 408 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEEFDVR-APSPDAPARSLSGGN 408 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHHcCcc-CCCCCcchhhcCCcc
Confidence 4999999985 346699999854221 1112222222 1223332100 011223457899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
.||+-+||-+.++|++||..+||-|||..+.+.+++.|.+.+ .++.|++||-+++.+-. ||||.||.+|+|+....
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 999999999999999999999999999999898988887754 58999999999988765 99999999999986443
No 386
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=2.9e-25 Score=245.96 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=85.0
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh
Q 012523 358 LLDS-SVSDEGENWSVGQRQLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT 432 (461)
Q Consensus 358 gl~t-~~~~~g~~lSgGq~Qrl~lARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 432 (461)
|+.. .++....+|||||+||++|||+|+++| +++||||||++||+.+.+.+.+.|+++. +++|+|+|+|+++.++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4443 357778899999999999999999999 9999999999999999999999998864 4789999999999999
Q ss_pred hcCEEEEE------eCCEEEEccch
Q 012523 433 DSDMVMVL------SYGSFSFNNVN 451 (461)
Q Consensus 433 ~~d~i~vl------~~G~i~~~~~~ 451 (461)
.||+|++| ++|+|++.|..
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999 79999998874
No 387
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=6.8e-25 Score=252.51 Aligned_cols=205 Identities=22% Similarity=0.237 Sum_probs=142.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHH---------HHccCCCCCce----E----EEEC
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLIS---------ALFRLVEPENG----R----ILID 294 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~---------ll~gl~~~~~G----~----i~i~ 294 (461)
.++++|++. ..|+|+|++|++||+++|+|+||||||||++ .|.|...+..+ . |.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 478887752 2699999999999999999999999999999 66665433111 1 3444
Q ss_pred CEeCCCCCH----------HHHh---------hc-----ceEEccC------------------C---------------
Q 012523 295 GLDICSMGL----------KDLR---------TK-----LSIIPQE------------------P--------------- 317 (461)
Q Consensus 295 g~~i~~~~~----------~~~r---------~~-----i~~v~Q~------------------~--------------- 317 (461)
-.++..-+. +++| +. ..+.++. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 333322110 1233 11 1122332 0
Q ss_pred -----ccccc-cHHhhcCCCCC-C-----CHHHHHHHHHHccHHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHh
Q 012523 318 -----TLFRG-SVRTNLDPLGM-Y-----SDNEIWEAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 318 -----~lf~~-ti~~Nl~~~~~-~-----~~~~~~~~~~~~~l~~~i~~l~~gl~t~-~~~~g~~lSgGq~Qrl~lARal 384 (461)
..|.+ ||.||+.+... + ..+++.+.+ +.+..+ |+... .++...+|||||+||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12333 67777754311 0 112222222 123332 45554 5777889999999999999999
Q ss_pred h---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEe------CCEEEEccch
Q 012523 385 L---KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLS------YGSFSFNNVN 451 (461)
Q Consensus 385 ~---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~------~G~i~~~~~~ 451 (461)
+ .+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.++.||++++|+ +|++++.|..
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 8 6999999999999999999999999998864 4789999999999998899999996 7999988864
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=7.3e-25 Score=220.37 Aligned_cols=200 Identities=18% Similarity=0.254 Sum_probs=165.5
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
++.+++.+|+|.|+++..+.+.+++++++.-+++++||+||+||||++|++.+-..|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 456999999999987765689999999999999999999999999999999999999999988775 567
Q ss_pred ceEEccCCccc-cccHH--hhc-CCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 310 LSIIPQEPTLF-RGSVR--TNL-DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 310 i~~v~Q~~~lf-~~ti~--~Nl-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
|+|-.|.-.=+ +..+. +-+ ..++-.+++++++.|...|++..+...+ ...||||||-|+++|.+..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 88888865422 22221 111 1122237899999999988866554332 2579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
.+|.+|+|||||+.||.++-..+-++|+.. +-.||+|||+.+.++. |+.+++.++|++..-...+
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 999999999999999999999999999886 3579999999999997 9999999999998644445
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=7.6e-25 Score=197.53 Aligned_cols=207 Identities=23% Similarity=0.389 Sum_probs=165.5
Q ss_pred EEEEeEEEEeC--CCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC----CceEEEECCEeCCCCCHHHH
Q 012523 233 IELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDL 306 (461)
Q Consensus 233 i~~~~v~~~y~--~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~----~~G~i~i~g~~i~~~~~~~~ 306 (461)
+.++|++..+. .+...+.+++|++++.||+-|+||+||||||-+.|.++|..+. +..+.++|+.++-.+++++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 55677776663 3334589999999999999999999999999999999998764 35566788899988998877
Q ss_pred hh----cceEEccCCccccc---c----HHhhcC---CCCC------CCHHHHHHHHHHccHHH---HHHhCCCcccccc
Q 012523 307 RT----KLSIIPQEPTLFRG---S----VRTNLD---PLGM------YSDNEIWEAMEKCQLKA---TISRLPMLLDSSV 363 (461)
Q Consensus 307 r~----~i~~v~Q~~~lf~~---t----i~~Nl~---~~~~------~~~~~~~~~~~~~~l~~---~i~~l~~gl~t~~ 363 (461)
|+ .|++++|+|.-.-+ + +-+||- +.+. ..+.+..+.+.++|+.+ .....|
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP------- 156 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP------- 156 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-------
Confidence 64 47899999975422 3 345662 1111 13445567788888754 333444
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEE
Q 012523 364 SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVL 440 (461)
Q Consensus 364 ~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl 440 (461)
..|..||-|++.||.|++.+|++||-||||+++|+.|..++.++|.+.. .+.|+++++|++..+.. ||+|-||
T Consensus 157 ----~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~Vl 232 (330)
T COG4170 157 ----YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232 (330)
T ss_pred ----chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEE
Confidence 4578899999999999999999999999999999999999999998754 36799999999999877 9999999
Q ss_pred eCCEEEEccc
Q 012523 441 SYGSFSFNNV 450 (461)
Q Consensus 441 ~~G~i~~~~~ 450 (461)
.-|+-+|+++
T Consensus 233 YCGQ~~ESa~ 242 (330)
T COG4170 233 YCGQTVESAP 242 (330)
T ss_pred Eecccccccc
Confidence 9999999888
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.8e-24 Score=200.18 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=116.1
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC-CHHHHhhcceEEccCCccccccHHhhc
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~-~~~~~r~~i~~v~Q~~~lf~~ti~~Nl 328 (461)
++++++++.+| +.+|+||||||||||+..|.-.+..... ....|..+.++ ....-...|.+.+|+..++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677777776 7799999999999999998743332211 00112211110 00011344777777665444 2
Q ss_pred CCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh----hcCCCEEEEeCCCCCCCHHH
Q 012523 329 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL----LKRNRILILDEATASIDSAT 404 (461)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal----~~~p~iliLDEpts~LD~~~ 404 (461)
+..+.+ ...+.++++. . ....+...+||+|||||++||||+ +.+|+++||||||++||+.+
T Consensus 84 ----~~~~~~------~~~~~~~l~~-~----~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 ----PLCVLS------QDMARSFLTS-N----KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred ----cCCHHH------HHHHHHHhcc-c----cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 111111 1112233332 1 122345578999999999999999 58999999999999999999
Q ss_pred HHHHHHHHHHHcC----CcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 405 DAILQRIIREEFP----GSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 405 ~~~i~~~l~~~~~----~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
...+.+.|.+... ++|++++||+++.+..+|+|-+|..|+
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999998887532 358999999999999999999998754
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=6.8e-24 Score=214.54 Aligned_cols=209 Identities=17% Similarity=0.268 Sum_probs=139.9
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
...+.++|+++.|.+ .++++|..|++.+|+++||+|+|||||||+++.+.|-..|..-.+-+--.+ +++.+..+. -
T Consensus 73 s~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~-a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQ-A 148 (614)
T ss_pred cccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHH-H
Confidence 345999999999954 458999999999999999999999999999999999988865444321111 111111110 0
Q ss_pred ceEEccCCccccccH-------HhhcCCC-CCCCH---HHHHHHHHHccHH-------HHHHhCCCcccc-cccCCCCCC
Q 012523 310 LSIIPQEPTLFRGSV-------RTNLDPL-GMYSD---NEIWEAMEKCQLK-------ATISRLPMLLDS-SVSDEGENW 370 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti-------~~Nl~~~-~~~~~---~~~~~~~~~~~l~-------~~i~~l~~gl~t-~~~~~g~~l 370 (461)
+-++.+ +..+. .|++.-. .+... +.+++.+...+.+ ..+.. .|... .......+|
T Consensus 149 v~~v~~----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~g--lgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 149 VQAVVM----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHG--LGFLSEMQDKKVKDL 222 (614)
T ss_pred HHHHhh----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHh--cCCCHhHHHHHhhcc
Confidence 111110 11111 1122111 01011 1122222222211 11111 12222 223456789
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc-EEEEEccCchhhhh-cCEEEEEeCCEEE-E
Q 012523 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGS-TVITIAHRVPTITD-SDMVMVLSYGSFS-F 447 (461)
Q Consensus 371 SgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~itH~~~~~~~-~d~i~vl~~G~i~-~ 447 (461)
|||||.|++|||||+.+|++|+|||||++||.++...+-+.|.+. ++ ++++++|.-+++.. |..|+.+++++.+ .
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 999999999999999999999999999999999999999888775 44 89999999999987 9999999999954 5
Q ss_pred ccc
Q 012523 448 NNV 450 (461)
Q Consensus 448 ~~~ 450 (461)
+|.
T Consensus 301 ~Gn 303 (614)
T KOG0927|consen 301 EGN 303 (614)
T ss_pred cCC
Confidence 665
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.4e-23 Score=230.39 Aligned_cols=93 Identities=24% Similarity=0.316 Sum_probs=84.2
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHhhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh
Q 012523 358 LLDS-SVSDEGENWSVGQRQLFCLGRVLLK---RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT 432 (461)
Q Consensus 358 gl~t-~~~~~g~~lSgGq~Qrl~lARal~~---~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 432 (461)
|+.. .+++...+|||||+||++|||+|++ +|+++||||||++||+...+.+.+.++++. ++.|+|+|+|+++.++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4543 3677889999999999999999997 599999999999999999999999998864 4789999999999998
Q ss_pred hcCEEEEE------eCCEEEEccc
Q 012523 433 DSDMVMVL------SYGSFSFNNV 450 (461)
Q Consensus 433 ~~d~i~vl------~~G~i~~~~~ 450 (461)
.||+|++| ++|+|++.|.
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~ 919 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGT 919 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCC
Confidence 99999999 7999999886
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.5e-24 Score=218.10 Aligned_cols=189 Identities=22% Similarity=0.332 Sum_probs=133.9
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
..|...+++..|++ +.+|++-++++..|..+|+|||||+|||||+++|.. |.|..-..+ +++|.--
T Consensus 79 ~Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~~ 144 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGDD 144 (582)
T ss_pred cceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheeccc
Confidence 46889999999963 459999999999999999999999999999999997 333222111 1111110
Q ss_pred eEEccCCccccccHHhh-cCCC----CCCCHHHHHH-HHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 311 SIIPQEPTLFRGSVRTN-LDPL----GMYSDNEIWE-AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 311 ~~v~Q~~~lf~~ti~~N-l~~~----~~~~~~~~~~-~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
-...|+. +-.++-+.- +.-. ...+.+++.. ++.-.|..+.....| -.+||||=|-|++||||+
T Consensus 145 t~~~~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 145 TEALQSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARAL 213 (582)
T ss_pred hHHHhhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHH
Confidence 0001111 111222211 1100 0012344444 555555555555544 367999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
..+||+|+|||||+.||..+-..+.+.|..+. .|+|+|||+-+.+.. |..|+.+++-++-
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~ 274 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLD 274 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999988888753 899999999999987 8999988876653
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.3e-24 Score=207.98 Aligned_cols=193 Identities=21% Similarity=0.284 Sum_probs=147.6
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
+-+-+.||+|.|++.. +.+.+++|-|.--+.+|||||||.|||||+++|.|-++|+.|+.+=+- |-+|
T Consensus 585 PvLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred CeeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4578999999997654 599999999999999999999999999999999999999999886442 3468
Q ss_pred eEEccCCc--c-ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 311 SIIPQEPT--L-FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 311 ~~v~Q~~~--l-f~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|+.-|... | -..|-.|.+.-.-+...++.++++-..|+..-. +|. ....||||||-|+++|-.-++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhcCC
Confidence 88777642 2 123555555321123344455555555543211 111 2367999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
|++|||||||++||.++-..+-++|.++ +-.||+|||+-..+.. --..+|+++-.|-+
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 9999999999999999999999999887 4589999999887765 34567777766544
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=208.97 Aligned_cols=169 Identities=23% Similarity=0.356 Sum_probs=129.6
Q ss_pred cccceeEEe-----eCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc-cccc
Q 012523 249 VLKGITCTF-----KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LFRG 322 (461)
Q Consensus 249 ~l~~i~l~i-----~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~ 322 (461)
.+.++.|++ ..||+++++||||-||||++++|+|..+|++|+ ..+ -+++|=||-.. -|++
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCC
Confidence 344555555 567899999999999999999999999999998 222 25888888533 3889
Q ss_pred cHHhhcCCCC-C-CCHHHH-HHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 012523 323 SVRTNLDPLG-M-YSDNEI-WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (461)
Q Consensus 323 ti~~Nl~~~~-~-~~~~~~-~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~ 399 (461)
||++-+.-.. . +.+... .+.++-.++++ .+..+..+|||||.||+|||.||.+++++++||||++.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~-----------i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLED-----------LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHH-----------HHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 9998774211 1 111111 12333333433 33344567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeC
Q 012523 400 IDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY 442 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~ 442 (461)
||.+.+-.+-+.+++.. .++|.++|-|++..+.. +||++|++.
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999888888888743 47899999999999998 899999964
No 396
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=3.6e-22 Score=182.78 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHhCCCcccccccCCCCCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEcc
Q 012523 352 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAH 426 (461)
Q Consensus 352 i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH 426 (461)
+..+|+|-.|++ ||+||+||++|||++. .+|+++++|||+++||+...+.+.+.+.+..+ ++|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456677777776 9999999999999995 79999999999999999999999999988644 589999999
Q ss_pred CchhhhhcCEEEEEeC
Q 012523 427 RVPTITDSDMVMVLSY 442 (461)
Q Consensus 427 ~~~~~~~~d~i~vl~~ 442 (461)
+++.++.+|+++.++.
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999989999999976
No 397
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.87 E-value=2.7e-21 Score=174.17 Aligned_cols=204 Identities=23% Similarity=0.258 Sum_probs=145.6
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC-CCH-----
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-MGL----- 303 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~-~~~----- 303 (461)
...|++.++.|+|+... |++-|+|++++.|....+||.||||||||+|+|.|-.-...|.|.+.|.+--. -+.
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 34699999999998666 59999999999999999999999999999999999988888999999975321 100
Q ss_pred -----HHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 304 -----KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 304 -----~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
.+|++..++--.-|.--+-++..-|.-..-...++- +..|+- +|-.+.=+-..+|-|||+|+
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rr---------e~LI~i----LDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERR---------EKLIDI----LDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhhccCCChhHh---------hhhhhh----eeccceEEEeeccccchhhh
Confidence 012222221111110001122221110000000110 111111 22223333456899999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREE--FPGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
.|+..|++.-++|+|||-|--||.-.+..+++.+++. .+++||+..||-.+-++. ...++.|.+|+++.
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 9999999999999999999999999999999999874 348999999999988876 89999999999986
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=1.4e-21 Score=182.45 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=107.1
Q ss_pred ccceeEEeeCCc-EEEEEcCCCCCHHHHHHHHc--------cCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc
Q 012523 250 LKGITCTFKEGT-RVGVVGRTGSGKTTLISALF--------RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (461)
Q Consensus 250 l~~i~l~i~~Ge-~v~ivG~sGsGKSTll~ll~--------gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 320 (461)
.-++|+++.+|+ +++|+||||||||||++.+. |++-|....+ .++|..|....+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 557899999996 69999999999999999988 5555531111 133333321100
Q ss_pred cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC
Q 012523 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400 (461)
Q Consensus 321 ~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~L 400 (461)
. .++ .+.++-.++|+|+||+..+++++ .+|+++++||||+++
T Consensus 80 g-------------~~~------------------------~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 80 G-------------DEQ------------------------SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred C-------------chh------------------------hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 0 000 01122256899999999999885 899999999999999
Q ss_pred CHHHHHHHHH-HHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEcc
Q 012523 401 DSATDAILQR-IIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 401 D~~~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~ 449 (461)
|+.+...+.. .++... .+.|+|++||+.+..+.||++++|++|++..++
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999877754 555543 378999999997777789999999999997664
No 399
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.2e-21 Score=188.07 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=70.6
Q ss_pred CCChhHHHHHHHHHHhhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 369 NWSVGQRQLFCLGRVLLK----RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
.|||||+||+++||+++. +|+++++||||++||+.+...+.+.+++..+++|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997654 9999999999999999999999999998877889999999999888899999999874
Q ss_pred E
Q 012523 445 F 445 (461)
Q Consensus 445 i 445 (461)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=5.4e-21 Score=180.01 Aligned_cols=180 Identities=14% Similarity=0.156 Sum_probs=110.1
Q ss_pred cceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hh-----cceEEccCCcccccc-
Q 012523 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RT-----KLSIIPQEPTLFRGS- 323 (461)
Q Consensus 251 ~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~-----~i~~v~Q~~~lf~~t- 323 (461)
+++.+++.+| ..+|+||||||||||+..|.-..-...... ... -...++ +. .|-...+.. ...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 4455555443 568999999999999998875442211100 000 011111 10 111111110 001
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh----hcCCCEEEEeCCCCC
Q 012523 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL----LKRNRILILDEATAS 399 (461)
Q Consensus 324 i~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal----~~~p~iliLDEpts~ 399 (461)
..+|+.. ....+...++...... +.+..+|.+.+. -..+...||+|||||+.+|+++ +.+|+++++||||++
T Consensus 85 ~~~n~~~--~~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~ 160 (213)
T cd03277 85 QVDNLCQ--FLPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQG 160 (213)
T ss_pred ccCCceE--EEchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccccc
Confidence 1233331 1233444444444333 445566655432 2446679999999998877554 589999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC--C-cEEEEEccCchhhh-hcC--EEEEEeCCE
Q 012523 400 IDSATDAILQRIIREEFP--G-STVITIAHRVPTIT-DSD--MVMVLSYGS 444 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~~~--~-~tvi~itH~~~~~~-~~d--~i~vl~~G~ 444 (461)
||+.+.+.+.+.+.+..+ + .|+|++||++.... .|| +|++|++|+
T Consensus 161 LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 161 MDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999988643 3 47999999985544 455 888888886
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.83 E-value=3.2e-20 Score=182.46 Aligned_cols=179 Identities=27% Similarity=0.451 Sum_probs=140.0
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC--------CCCCceEEEECCEeCCCCCHHHHhhcceEEccC--C
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--------VEPENGRILIDGLDICSMGLKDLRTKLSIIPQE--P 317 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl--------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~--~ 317 (461)
++|+|+||+|+||+.++|+|+|||||||++++++|. |.|++|.|.+--..++ +.+|-+ |
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 689999999999999999999999999999999985 6789999987543332 334433 3
Q ss_pred ccccccHHhhcCCCCCCCH-HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 318 TLFRGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 318 ~lf~~ti~~Nl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
.+=.-|+.|.+. ....| .-..+.++.+|+.+.+.-- ..-..||-|||.|..||+++...|.+++.||.
T Consensus 466 ~f~~~tilehl~--s~tGD~~~AveILnraGlsDAvlyR---------r~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 466 EFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAVLYR---------RKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred ccCchhHHHHHh--hccCchhHHHHHHHhhccchhhhhh---------ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 322337777663 22223 2234678888887644321 22357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh--cCEEEEEeCCEEEEc
Q 012523 397 TASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD--SDMVMVLSYGSFSFN 448 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~--~d~i~vl~~G~i~~~ 448 (461)
-|.||+.|..++.+.+.+.. .+.|.+++|||++..+. -|+++.+.-|.....
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~~ 590 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccccc
Confidence 99999999999999888764 58899999999999886 599999888876543
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=1.3e-20 Score=187.33 Aligned_cols=189 Identities=25% Similarity=0.358 Sum_probs=130.6
Q ss_pred eEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC-----CCCHHHHh----
Q 012523 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC-----SMGLKDLR---- 307 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~-----~~~~~~~r---- 307 (461)
++..+|+.++- .|..+- ..++|+.+||+||||-||||-+|+|+|.+.|+=|+- ++.+-. .+.-.++.
T Consensus 79 e~vHRYg~NgF-kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNGF-KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCce-EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHH
Confidence 35667865542 333332 356899999999999999999999999999987753 221100 00000000
Q ss_pred ----------hcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 308 ----------TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 308 ----------~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
.++-||---|-.+.|++.|-+. ++-+.-..++.++.+ +++..+..+..+|||||-||
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk-----------~~de~g~~devve~l--~L~nvl~r~v~~LSGGELQr 221 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLK-----------KVDERGKFDEVVERL--GLENVLDRDVSELSGGELQR 221 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHH-----------hhhhcCcHHHHHHHh--cchhhhhhhhhhcCchHHHH
Confidence 0111221122333444444332 111122344555554 46666677788999999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeC
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSY 442 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~ 442 (461)
+|||.|++++++++++|||||-||...+-...+.++++.+ +++||+|-|+++.+.. +|-|-++-.
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 9999999999999999999999999988888888988776 6999999999999998 899888753
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=4.2e-20 Score=203.97 Aligned_cols=202 Identities=26% Similarity=0.289 Sum_probs=162.4
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEeCCCCCHHHHhhcceEEccCCcccc-c
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-G 322 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 322 (461)
..+|+|++.-++||+.+.+.||.|||||||++.|+|-.+.. .|+|.+||.+.++..+ ++.++|++|+...|. .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 35899999999999999999999999999999999987653 5799999999988766 678999999877665 5
Q ss_pred cHHhhcCCCC----C---C---CHHHHHHHHHHccHHHHHHhCCCcccccccCCC-CCCChhHHHHHHHHHHhhcCCCEE
Q 012523 323 SVRTNLDPLG----M---Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEG-ENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 323 ti~~Nl~~~~----~---~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g-~~lSgGq~Qrl~lARal~~~p~il 391 (461)
||+|-+.+.. + + ++.+-.+ .....---+-.|....||.+|++. ...|||||+|+.+|-+++.+|+++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~--~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLA--AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHH--HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 9999986421 1 1 1222111 111111123345567899998654 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCch--hhhhcCEEEEEeCCEEEEccchhh
Q 012523 392 ILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVP--TITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
.+||+|.|||..|.-++.+.++...+ +.|.++.=|.++ ..+..|.|++|.+|+++.+|+..-
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~ 348 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE 348 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHH
Confidence 99999999999999999999998654 677777778764 567799999999999999998543
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.82 E-value=1.7e-19 Score=162.77 Aligned_cols=135 Identities=24% Similarity=0.301 Sum_probs=98.7
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE-EccCCccccccHHhhcCCCC
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI-IPQEPTLFRGSVRTNLDPLG 332 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~-v~Q~~~lf~~ti~~Nl~~~~ 332 (461)
++.+.++..+.|+|||||||||+++.+.-..-..+|.+.... +. +.++ +++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 444555679999999999999999997655544444443310 00 1111 11111111
Q ss_pred CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc----CCCEEEEeCCCCCCCHHHHHHH
Q 012523 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK----RNRILILDEATASIDSATDAIL 408 (461)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~----~p~iliLDEpts~LD~~~~~~i 408 (461)
+ -+. .+||+||+||+++||++.. +|+++++|||++++|+.....+
T Consensus 72 -------------------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 72 -------------------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred -------------------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 000 1189999999999999987 7899999999999999999999
Q ss_pred HHHHHHHcC-CcEEEEEccCchhhhhcCEEEEEeC
Q 012523 409 QRIIREEFP-GSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 409 ~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
.+.+.+... ++++|++||+++..+.+|+++.|+.
T Consensus 121 ~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 998887533 5899999999999999999999964
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=1.3e-19 Score=171.57 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=110.6
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce-EEccCCccccccHH
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVR 325 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 325 (461)
..+.+|+++++++|++++|.|||||||||+++.+.- -.+..++| +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 358999999999999999999999999999999981 12344555 6666542211 11
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--hcCCCEEEEeCC---CCCC
Q 012523 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILILDEA---TASI 400 (461)
Q Consensus 326 ~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal--~~~p~iliLDEp---ts~L 400 (461)
+.+ +...++.+.+ ...+|.|++|+..+++++ +.+|+++||||| |+++
T Consensus 74 ~~i--------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCI--------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred cee--------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 111 1122222111 246899999999999999 899999999999 9999
Q ss_pred CHHHHH-HHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEcc
Q 012523 401 DSATDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 401 D~~~~~-~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~ 449 (461)
|+.... .+.+.+.+ ..++++|++||..+..+.||++..+++|++...+
T Consensus 126 D~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 126 DGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 998754 33355543 3478999999975566669999999999987544
No 406
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.4e-18 Score=168.12 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=61.6
Q ss_pred CCCChhHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-c---
Q 012523 368 ENWSVGQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-S--- 434 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~--- 434 (461)
..+|+||+|++++||+++ .+|++++|||||++||+...+.+.+.+.+.. .+++++|+...+.. |
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~ 258 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRR 258 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccC
Confidence 347999999999999985 7999999999999999999999999987642 45555555544443 5
Q ss_pred CEEEEEeCCEE
Q 012523 435 DMVMVLSYGSF 445 (461)
Q Consensus 435 d~i~vl~~G~i 445 (461)
++++.+++|+|
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 78999999996
No 407
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.77 E-value=8.4e-19 Score=168.18 Aligned_cols=184 Identities=17% Similarity=0.240 Sum_probs=126.7
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE--EECCEeCCCCCHHHHhhcc--eEEccCCccccccHHhhcCC
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI--LIDGLDICSMGLKDLRTKL--SIIPQEPTLFRGSVRTNLDP 330 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i--~i~g~~i~~~~~~~~r~~i--~~v~Q~~~lf~~ti~~Nl~~ 330 (461)
+.+.+||+++|+||+|+|||||++.+.+..+...+++ .+-...-+..+..++.+.+ .+|-.+. ..+-......
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 5788999999999999999999999999887753332 2221111224455555444 0000000 0000000000
Q ss_pred CCCCCHHHHHHHHH---Hcc-----HHHHHHhCCCcccccccCCCCCCChhH--------HHHHHHHHHhhcCCCEEEEe
Q 012523 331 LGMYSDNEIWEAME---KCQ-----LKATISRLPMLLDSSVSDEGENWSVGQ--------RQLFCLGRVLLKRNRILILD 394 (461)
Q Consensus 331 ~~~~~~~~~~~~~~---~~~-----l~~~i~~l~~gl~t~~~~~g~~lSgGq--------~Qrl~lARal~~~p~iliLD 394 (461)
...+...++ ..| +-|.+.+++.++++..++.|..+|||| +||+++||+++++++|.+|
T Consensus 88 -----~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 -----AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred -----HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 000111111 112 224578889999999999999999999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 395 EATASIDSATDAI-LQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 395 Epts~LD~~~~~~-i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
||+.+|+.++.. ++ +.+.. .++|.|++||+++...++|.|.||+.|++.+.-+
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll 216 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELL 216 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhh
Confidence 999999755442 33 33333 4789999999999999999999999999987665
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=6.2e-18 Score=195.53 Aligned_cols=203 Identities=18% Similarity=0.208 Sum_probs=136.5
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc------cC---CCCCceEEEECCEeCCCCCH----------HHHhhc
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF------RL---VEPENGRILIDGLDICSMGL----------KDLRTK 309 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~------gl---~~~~~G~i~i~g~~i~~~~~----------~~~r~~ 309 (461)
=|+|++.+|+-|..++|.|.||||||||++=.+ .+ ++.-+--|.+|-.+|..-+. +++|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997443 11 12334457788776644321 244554
Q ss_pred ceEEcc------CCcccccc--------------HHhhcCCCC------------CCCHH-----------------HHH
Q 012523 310 LSIIPQ------EPTLFRGS--------------VRTNLDPLG------------MYSDN-----------------EIW 340 (461)
Q Consensus 310 i~~v~Q------~~~lf~~t--------------i~~Nl~~~~------------~~~~~-----------------~~~ 340 (461)
++-.|+ .+..|+-. +.-++.|.. .+.++ .+.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 443222 11122111 111111100 01111 011
Q ss_pred HHHHHc-------cHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC---CCEEEEeCCCCCCCHHHHHHHHH
Q 012523 341 EAMEKC-------QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR---NRILILDEATASIDSATDAILQR 410 (461)
Q Consensus 341 ~~~~~~-------~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~---p~iliLDEpts~LD~~~~~~i~~ 410 (461)
+|++.. ..-..+..+.-||- .+|+...+|||||.|||-||.-|.++ +.++||||||.||++..-+++.+
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 222211 11122333333432 45888999999999999999999876 68999999999999999999999
Q ss_pred HHHHHc-CCcEEEEEccCchhhhhcCEEEEE------eCCEEEEccchh
Q 012523 411 IIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGSFSFNNVNF 452 (461)
Q Consensus 411 ~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl------~~G~i~~~~~~~ 452 (461)
.++++. .+.|+|+|.|+++.++.||+|+-| +.|+|++.|..-
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHH
Confidence 988864 589999999999999999999999 668999988743
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=9.9e-18 Score=177.05 Aligned_cols=93 Identities=26% Similarity=0.318 Sum_probs=83.6
Q ss_pred cccCCCCCCChhHHHHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEE
Q 012523 362 SVSDEGENWSVGQRQLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMV 437 (461)
Q Consensus 362 ~~~~~g~~lSgGq~Qrl~lARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i 437 (461)
.+|+...+|||||.||+-||.-|.+.. -++||||||.||-.+--+++++.|.++. +|.|||+|-|+++.++.||+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 468999999999999999999999987 8999999999999988888888888854 589999999999999999999
Q ss_pred EEE------eCCEEEEccchhhH
Q 012523 438 MVL------SYGSFSFNNVNFCV 454 (461)
Q Consensus 438 ~vl------~~G~i~~~~~~~~~ 454 (461)
+-| +.|+|+++|..-.+
T Consensus 895 IDLGPeGG~~GG~iva~GTPeev 917 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEV 917 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHH
Confidence 998 67999998875443
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.75 E-value=4.8e-18 Score=158.88 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=99.0
Q ss_pred ceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc-CCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCC
Q 012523 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 330 (461)
Q Consensus 252 ~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g-l~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~ 330 (461)
..++++.+|++++|+|||||||||+++.+.+ .+.+..|.... + .+..+++..|....|. ..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~~~~--~~d~--- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFTRIG--AEDS--- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEEEec--Cccc---
Confidence 3455666899999999999999999999994 32222222110 0 0122333222111111 0011
Q ss_pred CCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 012523 331 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQR 410 (461)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~ 410 (461)
+.++-..++.+++| +..+.+.+.+|+++|+||||+++|+.....+..
T Consensus 85 --------------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 85 --------------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred --------------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 11112345666665 666677888999999999999999987665544
Q ss_pred -HHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 411 -IIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 411 -~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
.++... .+.++|++||+.+.++.+|++..+++|++.+++.
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~ 173 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELIT 173 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEec
Confidence 344332 3789999999999999999999999999887664
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.74 E-value=2.8e-18 Score=159.84 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=92.0
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc-cccHHh
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRT 326 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ 326 (461)
++++|++++. |++++|+||||||||||+|.|.+... +...|.++... .+++|...+| ..|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 4788886665 79999999999999999999987442 22356555321 2566755566 459999
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHH
Q 012523 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406 (461)
Q Consensus 327 Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~ 406 (461)
|+........++.. .+.+.++.+. ..+|+++|+||||+++|+....
T Consensus 79 ~l~~~~s~~~~e~~------~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 79 DLRDGISYFYAELR------RLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred ccccccChHHHHHH------HHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHHH
Confidence 99754322222221 1233333321 0799999999999999998876
Q ss_pred HHHH-HHHHH-cCCcEEEEEccCchhhhh
Q 012523 407 ILQR-IIREE-FPGSTVITIAHRVPTITD 433 (461)
Q Consensus 407 ~i~~-~l~~~-~~~~tvi~itH~~~~~~~ 433 (461)
.+.. .++.. .++.|+|++||+++.+..
T Consensus 125 ~l~~~ll~~l~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 125 AASAAVLKFLKNKNTIGIISTHDLELADL 153 (199)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence 5543 45443 347899999999987654
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.8e-18 Score=169.54 Aligned_cols=202 Identities=21% Similarity=0.356 Sum_probs=132.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc--CCCCCceEEEECCEeCCCCCHHHH---
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDL--- 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g--l~~~~~G~i~i~g~~i~~~~~~~~--- 306 (461)
.|.++|.+.+-. ++..+.|.||.|-.|..+++|||||-|||||++-|.. +--|..=.++++.+.+-.-+...+
T Consensus 264 DIKiEnF~ISA~--Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQ--GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeecc--cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 377788776653 3458999999999999999999999999999998873 333333445554443321111000
Q ss_pred ----hhcceEEccCCcc----ccc--cHHhhcCCCCCCCHHHHHHHHHHccH-------HHHHHhCCCcccccccCCC-C
Q 012523 307 ----RTKLSIIPQEPTL----FRG--SVRTNLDPLGMYSDNEIWEAMEKCQL-------KATISRLPMLLDSSVSDEG-E 368 (461)
Q Consensus 307 ----r~~i~~v~Q~~~l----f~~--ti~~Nl~~~~~~~~~~~~~~~~~~~l-------~~~i~~l~~gl~t~~~~~g-~ 368 (461)
.++..++-.+..| -.| |..|-+ +++..-++..|. ...+..| |++..+-++. .
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl--------~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~ 411 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERL--------KEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTT 411 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH--------HHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCcc
Confidence 0111111111100 000 111111 011111121111 1122222 4555554443 6
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 012523 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
.+|||=|-|++|||||+.+|-+|.|||||++||......+-++|..+ .+|.++|||+-.++.. |..|+.+|+-++..
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 79999999999999999999999999999999998887787888776 4799999999999988 99999999988754
No 413
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.70 E-value=5.6e-15 Score=141.29 Aligned_cols=182 Identities=16% Similarity=0.285 Sum_probs=146.1
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
+||+++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.++++++...++..++...+.+..++..
T Consensus 90 ~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 169 (275)
T PF00664_consen 90 SYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLS 169 (275)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhcccccccc
Confidence 46888999999999999999999999999989998888888888999999999999888777777777788888888888
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (461)
++..+..++..+.+.|.++|+++||+|+.|+++.+++.+..++..+...+......+.......+..+...++.++. .
T Consensus 170 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 249 (275)
T PF00664_consen 170 KKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYL 249 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888999999999999999999999999999999998887777666655555555555555444333333332 2
Q ss_pred -HhCCCccHHHHHHHHHHHHHHHHH
Q 012523 160 -LLPGKHLPGFVGLSLSYALTLSSI 183 (461)
Q Consensus 160 -~~~g~~~~g~~~~~~~~~~~~~~~ 183 (461)
...|.+++|.+.+++.+...+..|
T Consensus 250 ~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 250 SVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp -HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 234888999888877777666554
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=6.2e-17 Score=179.67 Aligned_cols=88 Identities=22% Similarity=0.259 Sum_probs=81.6
Q ss_pred ccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEE
Q 012523 363 VSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 363 ~~~~g~~lSgGq~Qrl~lARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~v 439 (461)
++....+|||||+||++|||||..+| ++|||||||++||+...+.+.+.|+++. ++.|||+|+|+++.+..||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46677899999999999999999986 8999999999999999999999998864 47899999999999999999999
Q ss_pred E------eCCEEEEccc
Q 012523 440 L------SYGSFSFNNV 450 (461)
Q Consensus 440 l------~~G~i~~~~~ 450 (461)
| ++|+|+++|.
T Consensus 561 LgpgaG~~~G~Iv~~g~ 577 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGT 577 (924)
T ss_pred ecccccCCCCEEeeccC
Confidence 9 9999999886
No 415
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.69 E-value=2.9e-17 Score=136.03 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=70.3
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhh
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 327 (461)
.+|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|++||++|
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 4899999999999999999999999999999986 89999999999999988888889999888 899999999
Q ss_pred cCC
Q 012523 328 LDP 330 (461)
Q Consensus 328 l~~ 330 (461)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 974
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.67 E-value=4e-16 Score=151.33 Aligned_cols=133 Identities=19% Similarity=0.272 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC-HHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHH
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI 339 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~ 339 (461)
..++|+||||||||||++.|+|++.|++|+|.++|+++...+ ..++...++++||...--..++.+|.. +.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~~- 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KAE- 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HHH-
Confidence 678999999999999999999999999999999999998664 467777888999965322234444320 000
Q ss_pred HHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc
Q 012523 340 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGS 419 (461)
Q Consensus 340 ~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 419 (461)
| ...++|+ .+|+++++|||++. +.+...++....+.
T Consensus 185 ---------------------------------~---~~~~i~~--~~P~villDE~~~~------e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 185 ---------------------------------G---MMMLIRS--MSPDVIVVDEIGRE------EDVEALLEALHAGV 220 (270)
T ss_pred ---------------------------------H---HHHHHHh--CCCCEEEEeCCCcH------HHHHHHHHHHhCCC
Confidence 1 1344455 49999999999742 23434444444689
Q ss_pred EEEEEccCchh--h------------hhcCEEEEEeCCE
Q 012523 420 TVITIAHRVPT--I------------TDSDMVMVLSYGS 444 (461)
Q Consensus 420 tvi~itH~~~~--~------------~~~d~i~vl~~G~ 444 (461)
|+|+++|+.+. + ..+||+++|++|+
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 99999997655 3 3489999999876
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.65 E-value=5.1e-16 Score=145.08 Aligned_cols=138 Identities=16% Similarity=0.097 Sum_probs=94.0
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE-EccCCccccccHH
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI-IPQEPTLFRGSVR 325 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~-v~Q~~~lf~~ti~ 325 (461)
.++.+|+++++++|+.++|+||||+||||+++.+.++. +..++|+ ||-.. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 35899999999999999999999999999999998773 2233332 22111 112445
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 012523 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (461)
Q Consensus 326 ~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~ 405 (461)
|++...- +.+..+.++..++|+|++|+ ..+-+++.+|++++||||++++|+...
T Consensus 73 d~I~~~~-------------------------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSRL-------------------------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEec-------------------------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 5552110 01111223346789999976 455567889999999999999999764
Q ss_pred HHH-HHHHHHHc-CCcEEEEEccCchhhhh
Q 012523 406 AIL-QRIIREEF-PGSTVITIAHRVPTITD 433 (461)
Q Consensus 406 ~~i-~~~l~~~~-~~~tvi~itH~~~~~~~ 433 (461)
..+ ...++... .++++|++||+.+.++.
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 433 33343322 37899999999987765
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.65 E-value=5e-16 Score=153.60 Aligned_cols=178 Identities=25% Similarity=0.351 Sum_probs=130.3
Q ss_pred EEeCCCCCccccceeEEeeCCc-----EEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGT-----RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge-----~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 314 (461)
+.|++.. ....++.|.|+.|+ ++...|+||-||||++++++|..+|++|. ++..+ +++|=|
T Consensus 343 y~Yp~m~-k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 343 YSYPKMK-KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eccCcce-eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 4565433 47899999999885 78899999999999999999999998762 22222 467777
Q ss_pred cCCc-cccccHHhhcCCC-C-CCCHHH-HHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 315 QEPT-LFRGSVRTNLDPL-G-MYSDNE-IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 315 Q~~~-lf~~ti~~Nl~~~-~-~~~~~~-~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
|... -|.+|+|+-+.-. + .+.+.+ ..++++-.. .+..++....+||||+.||+|+|-++=+.+++
T Consensus 409 qkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~-----------ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ-----------IENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred cccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh-----------HHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 7644 4788998766310 1 111111 122222222 33344555678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHH--HcCCcEEEEEccCchhhhh-cCEEEEEeC
Q 012523 391 LILDEATASIDSATDAILQRIIRE--EFPGSTVITIAHRVPTITD-SDMVMVLSY 442 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~--~~~~~tvi~itH~~~~~~~-~d~i~vl~~ 442 (461)
++.|||.+-||.+.+..--+.+++ +..++|-.+|-|+.-...+ +||++|.+.
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 999999999999877655555555 2347899999999877766 999999865
No 419
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.65 E-value=3.2e-16 Score=174.39 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=83.7
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh
Q 012523 358 LLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD 433 (461)
Q Consensus 358 gl~t~-~~~~g~~lSgGq~Qrl~lARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~ 433 (461)
|++.. .+....+|||||+||++|||||..+| ++|||||||++||+...+.+.+.|+++. .+.|||+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 45433 56677899999999999999999997 9999999999999999999999998864 47899999999999989
Q ss_pred cCEEEEE------eCCEEEEccc
Q 012523 434 SDMVMVL------SYGSFSFNNV 450 (461)
Q Consensus 434 ~d~i~vl------~~G~i~~~~~ 450 (461)
||+|++| ++|+|+.+|.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~ 579 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGT 579 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccC
Confidence 9999999 9999998876
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.61 E-value=1.6e-15 Score=143.18 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=94.9
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcccc-ccHH
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVR 325 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 325 (461)
+.+.+|++++.++ ++++|+|||||||||+++.+.+..-. |. .|..+ +. .+..++++.| +|. -++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---PA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---cc--ccceecceee---EeccCCch
Confidence 3588999999887 99999999999999999999764321 10 11111 11 1234565544 232 2334
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--hcCCCEEEEeCC---CCCC
Q 012523 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILILDEA---TASI 400 (461)
Q Consensus 326 ~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal--~~~p~iliLDEp---ts~L 400 (461)
+|+..+ .|.=...+..+++++ +.+|++++|||| |+++
T Consensus 84 ~~ls~g--------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 84 DDLAGG--------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred hhhccC--------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 443211 011112223344444 469999999999 9999
Q ss_pred CHHH-HHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEE
Q 012523 401 DSAT-DAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447 (461)
Q Consensus 401 D~~~-~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~ 447 (461)
|... ...+.+.+.+. .++|+|++||+.+..+.+|++..+++|++..
T Consensus 126 D~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~ 172 (216)
T cd03284 126 DGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAV 172 (216)
T ss_pred HHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEE
Confidence 9865 34555555442 3789999999987777788877777777654
No 421
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=3.5e-15 Score=174.14 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=102.1
Q ss_pred cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH------HHHHHHHhhcCCCEEE
Q 012523 319 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ------LFCLGRVLLKRNRILI 392 (461)
Q Consensus 319 lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q------rl~lARal~~~p~ili 392 (461)
.|+||+++||.+.++.+++ +.+++.++..+++..+|.| +|.++.+| .||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4899999999984445555 6788999999999999999 99998775 89999999 9999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc------CCcEEEEEccCchhhh------hcCEEEEEe
Q 012523 393 LDEATASIDSATDAILQRIIREEF------PGSTVITIAHRVPTIT------DSDMVMVLS 441 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~~------~~d~i~vl~ 441 (461)
|||||++||+.+...+.+.|.... .+.|+|+|||++..+. .||+.+-+.
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999998888877642 3679999999999875 356777553
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.58 E-value=7.8e-15 Score=138.88 Aligned_cols=72 Identities=28% Similarity=0.377 Sum_probs=59.2
Q ss_pred CCChhHHHHHHHHHHh----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEE
Q 012523 369 NWSVGQRQLFCLGRVL----LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
.+|||||-+++||--+ +.++|+++||||.++||+.....+.+.|++..++.-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999998443 45789999999999999999999999999988888999999999999999999876
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.54 E-value=1.1e-13 Score=140.52 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=65.6
Q ss_pred CCCChhHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh---cC
Q 012523 368 ENWSVGQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD---SD 435 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~---~d 435 (461)
..+|.||+|++++|++++ .+|++++||||+++||+...+.+.+.+.+. ++.++++||++..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 468999999999999885 799999999999999999999998888653 4588999998876544 46
Q ss_pred EEEEEeCCEE
Q 012523 436 MVMVLSYGSF 445 (461)
Q Consensus 436 ~i~vl~~G~i 445 (461)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.51 E-value=1.7e-14 Score=155.37 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=81.4
Q ss_pred HhCCCcccccccCCC------CCCChhHHHHHHHHHHhh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHH
Q 012523 353 SRLPMLLDSSVSDEG------ENWSVGQRQLFCLGRVLL----------KRNRILILDEAT-ASIDSATDAILQRIIREE 415 (461)
Q Consensus 353 ~~l~~gl~t~~~~~g------~~lSgGq~Qrl~lARal~----------~~p~iliLDEpt-s~LD~~~~~~i~~~l~~~ 415 (461)
..+|+++++.+++.| .+|||||+||++||||++ .+|+++|||||| ++||+.+...+.+.|.+.
T Consensus 446 ~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~ 525 (562)
T PHA02562 446 FTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL 525 (562)
T ss_pred EEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC
Confidence 346777888887777 689999999999999987 599999999998 789999999999999987
Q ss_pred cCCcEEEEEccCchhhhhcCEEEEEeC-CEE
Q 012523 416 FPGSTVITIAHRVPTITDSDMVMVLSY-GSF 445 (461)
Q Consensus 416 ~~~~tvi~itH~~~~~~~~d~i~vl~~-G~i 445 (461)
++.|+|+|||++.....||++++|++ |+.
T Consensus 526 -~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 -KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred -CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 78899999999988888999999987 654
No 425
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=1.4e-13 Score=129.67 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=88.8
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc--CCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcccc--ccH
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR--GSV 324 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g--l~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~--~ti 324 (461)
+-+|++++=..+.+++|+||||+||||++|.+.. .. +..|...... .-.++|..|...-+. .++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 5566655422237899999999999999999983 33 4556554321 124667766543221 122
Q ss_pred HhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHH
Q 012523 325 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404 (461)
Q Consensus 325 ~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~ 404 (461)
.+++ ..| .-+-||+++|++++.+|++++||||++++|+..
T Consensus 86 ~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 86 SSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred hhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 2221 011 234599999999999999999999999999865
Q ss_pred H-HHHHHHHHHHcC----CcEEEEEccCchhhhhc
Q 012523 405 D-AILQRIIREEFP----GSTVITIAHRVPTITDS 434 (461)
Q Consensus 405 ~-~~i~~~l~~~~~----~~tvi~itH~~~~~~~~ 434 (461)
. ......++...+ +.++|++||+++.++..
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 3 343445555422 24899999999887654
No 426
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.49 E-value=5.8e-13 Score=137.32 Aligned_cols=173 Identities=19% Similarity=0.241 Sum_probs=116.1
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCE---eCCC-----CCHHHHhhcceEEccCCcc
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICS-----MGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~---~i~~-----~~~~~~r~~i~~v~Q~~~l 319 (461)
.+++++ +++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|+ ++.+ ++...+++.+.++.+...
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~- 224 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ- 224 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC-
Confidence 489999 999999999999999999999999999999999999999554 4442 344456777888764211
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCccccccc-CCCCCCChhHHHH-HHHHHHhhcCCCEEEEeCCC
Q 012523 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVS-DEGENWSVGQRQL-FCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 320 f~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~-~~g~~lSgGq~Qr-l~lARal~~~p~iliLDEpt 397 (461)
..-+++..+.-..-+.++... .|.|..+- ++-.++ -|.|| +++ .+.+|| .|
T Consensus 225 --------------~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~--A~A~rEisl---~~ge~P------~~ 277 (438)
T PRK07721 225 --------------PALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRV--AMAQREIGL---AVGEPP------TT 277 (438)
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHH--HHHHHHHHH---hcCCCC------cc
Confidence 011222222222223333332 24443321 211111 11111 111 123443 57
Q ss_pred CCCCHHHHHHHHHHHHHHc---CCc-----EEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 398 ASIDSATDAILQRIIREEF---PGS-----TVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
+|+|+.....+.+.+++.. ++. ||++.+|+++. ..||++.++.+|+|+.++.
T Consensus 278 ~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 278 KGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQ 337 (438)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEecc
Confidence 8999999999999988765 364 99999999985 6699999999999998876
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.45 E-value=8.7e-14 Score=128.28 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=49.7
Q ss_pred CCCCChhHHHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHc--CCcEEEEEccCchhhhhcCE
Q 012523 367 GENWSVGQRQLFCLGRVLLK--RNRILILDEATASIDSATDAILQ-RIIREEF--PGSTVITIAHRVPTITDSDM 436 (461)
Q Consensus 367 g~~lSgGq~Qrl~lARal~~--~p~iliLDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~~~~~~~~d~ 436 (461)
..++|+|++| +++++.. +|+++++|||++++|+.....+. ..++... .++++|++||+.+..+.||+
T Consensus 59 ~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 59 LSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred ccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 3567888777 4444444 99999999999999998766554 4444433 36899999999986666764
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=1.4e-13 Score=129.77 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHc
Q 012523 373 GQRQLFCLGRVLLKRNRILILDEAT-----ASIDSATDAILQRIIREEF 416 (461)
Q Consensus 373 Gq~Qrl~lARal~~~p~iliLDEpt-----s~LD~~~~~~i~~~l~~~~ 416 (461)
-|+++..|||+++.+|+++++|||| ++||+.+.+.+.+.+++..
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998753
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.42 E-value=6.3e-13 Score=146.33 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=96.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCC-cEEEEEcCCCCCHHHHHHHHccC-CCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEG-TRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G-e~v~ivG~sGsGKSTll~ll~gl-~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
.+.++++..-+-.... .-.+|+++.+| ++++|+||||+||||++|.+.+. +.+..|
T Consensus 295 ~i~l~~~rhPll~~~~--~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-------------------- 352 (771)
T TIGR01069 295 KIILENARHPLLKEPK--VVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-------------------- 352 (771)
T ss_pred CEEEccccCceecCCc--eEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------------
Confidence 4777776532211100 11378888877 99999999999999999999887 333332
Q ss_pred ceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
.+||...... -.+.+++. ....+++ . +.++..++|+|++|+..+++++ .+|+
T Consensus 353 -~~Vpa~~~~~-~~~~d~i~--~~i~~~~------------s-----------i~~~LStfS~~m~~~~~il~~~-~~~s 404 (771)
T TIGR01069 353 -IPIPANEHSE-IPYFEEIF--ADIGDEQ------------S-----------IEQNLSTFSGHMKNISAILSKT-TENS 404 (771)
T ss_pred -CCccCCcccc-ccchhhee--eecChHh------------H-----------HhhhhhHHHHHHHHHHHHHHhc-CCCc
Confidence 1444432100 01122221 0111110 0 1122356899999999999887 7899
Q ss_pred EEEEeCCCCCCCHHHHHHHH-HHHHHH-cCCcEEEEEccCchhhh
Q 012523 390 ILILDEATASIDSATDAILQ-RIIREE-FPGSTVITIAHRVPTIT 432 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~-~~l~~~-~~~~tvi~itH~~~~~~ 432 (461)
++|||||++|+|+.....+. ..++.. ..++++|++||..+...
T Consensus 405 LvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 405 LVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 99999999999998877664 444443 24789999999987543
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.41 E-value=4.5e-13 Score=143.87 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=71.6
Q ss_pred CCCChhHHHHHHHHHHhhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCC
Q 012523 368 ENWSVGQRQLFCLGRVLLKR----NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G 443 (461)
..+||||+||++|||+++.. |+++||||||++||+.+...+.+.|++..+++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999985 69999999999999999999999999887789999999999999889999999987
Q ss_pred E
Q 012523 444 S 444 (461)
Q Consensus 444 ~ 444 (461)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.37 E-value=1.5e-12 Score=138.90 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHhhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 369 NWSVGQRQLFCLGRVLLK----RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
.+||||+||++|||+++. +|+++|+|||+++||+.+...+.+.|++..++.|+|+|||++.....||+.++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 479999999999999997 5899999999999999999999999999877899999999999998899999998754
No 432
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.34 E-value=1e-12 Score=130.49 Aligned_cols=174 Identities=22% Similarity=0.320 Sum_probs=112.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccC-C-ccccccHHhhcCCC-CCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE-P-TLFRGSVRTNLDPL-GMY 334 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~-~-~lf~~ti~~Nl~~~-~~~ 334 (461)
+||+..++||.||-||||-++.++|-.+|.-|.-- ++ .+|...++|---. - ..|.--+.+|+... .+.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p--------p~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP--------PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC--------cchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 58999999999999999999999999999877532 11 1222222221000 0 00111223333211 000
Q ss_pred CHHHHHHHHH------------HccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH
Q 012523 335 SDNEIWEAME------------KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402 (461)
Q Consensus 335 ~~~~~~~~~~------------~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~ 402 (461)
.-+.+-++.+ .-...+.+..+ .++.........||||+-||.++|.+...++++.++|||.|-||.
T Consensus 169 yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~--~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDV 246 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQL--DLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH--HHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchH
Confidence 0011111111 11111122221 123333344568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeC
Q 012523 403 ATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSY 442 (461)
Q Consensus 403 ~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~ 442 (461)
..+.+-...++++. .++=+|+|-|+++.+.+ +|-|-.+-.
T Consensus 247 KQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 247 KQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 98888888888854 58899999999999997 898888753
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=6.8e-12 Score=118.64 Aligned_cols=137 Identities=16% Similarity=0.080 Sum_probs=83.6
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc-CCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHH
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g-l~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 325 (461)
..+.+|+++++++|++++|+||||+||||+++.+++ .+.+..|...... . -.+++..|=.. .....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i~~--~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSVLT--RMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceEEE--EecCc
Confidence 458999999999999999999999999999999999 7777888765432 1 12333332111 10112
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 012523 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (461)
Q Consensus 326 ~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~ 405 (461)
|++.-+...-..|+ ++++-+-.-+.+|+++|||||.++.|+...
T Consensus 85 d~~~~~~StF~~e~------------------------------------~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQHGMSTFMVEL------------------------------------SETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred cccccccchHHHHH------------------------------------HHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 22211000001111 122111112357899999999777765443
Q ss_pred H----HHHHHHHHHcCCcEEEEEccCchhhhh
Q 012523 406 A----ILQRIIREEFPGSTVITIAHRVPTITD 433 (461)
Q Consensus 406 ~----~i~~~l~~~~~~~tvi~itH~~~~~~~ 433 (461)
. .+.+.+.+. +++|+|++||+.+..+.
T Consensus 129 ~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 129 IAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 3 344444332 47899999999886543
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.29 E-value=5.2e-11 Score=113.55 Aligned_cols=158 Identities=11% Similarity=0.102 Sum_probs=89.0
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHH-HHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTL-ISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTl-l~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
+.++++...+++ -+++|+.+.|.|++||||||+ ++.+.++.++.+..+++.... ++.++.+++.
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~~~~~ 72 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFIKQMM 72 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHHHH
Confidence 556666555532 278999999999999999999 689998877654444444211 2222221110
Q ss_pred EEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh----cC
Q 012523 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KR 387 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~----~~ 387 (461)
+ ++.+. +++... ..+. .+ +-...+|+++.++-.+.+.+- .+
T Consensus 73 ---------------~--~g~~~--------------~~~~~~--~~l~-~~-~~~~~~~~~~~~~~~l~~il~~~~~~~ 117 (230)
T PRK08533 73 ---------------S--LGYDI--------------NKKLIS--GKLL-YI-PVYPLLSGNSEKRKFLKKLMNTRRFYE 117 (230)
T ss_pred ---------------H--hCCch--------------HHHhhc--CcEE-EE-EecccccChHHHHHHHHHHHHHHHhcC
Confidence 0 00000 000000 0000 00 000124555555444444333 36
Q ss_pred CCEEEEeCCCCCC----CHHHHHHHHHHHHHHcC-CcEEEEEccCchh--------hhh-cCEEEEEe
Q 012523 388 NRILILDEATASI----DSATDAILQRIIREEFP-GSTVITIAHRVPT--------ITD-SDMVMVLS 441 (461)
Q Consensus 388 p~iliLDEpts~L----D~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--------~~~-~d~i~vl~ 441 (461)
|+++++||||+.+ |+...+.+.+.++...+ ++|+++ ||+... ++. ||-|+.|+
T Consensus 118 ~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 118 KDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 9999999999999 77766778888876543 666555 555432 233 68888776
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.28 E-value=2.2e-11 Score=134.50 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=60.4
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH-cCCcEEEEEccCchhhhh-cCEEEEEeCC
Q 012523 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRI-IREE-FPGSTVITIAHRVPTITD-SDMVMVLSYG 443 (461)
Q Consensus 367 g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~-~~~~tvi~itH~~~~~~~-~d~i~vl~~G 443 (461)
..++|+|++|+..+++++ .+|+++|||||++|+|+.....+... ++.. ..++++|++||..+.... +|+..+ .++
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v-~~~ 465 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV-ENA 465 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe-EEE
Confidence 367899999999999999 89999999999999999887666543 4333 247899999999887766 454433 345
Q ss_pred EEEE
Q 012523 444 SFSF 447 (461)
Q Consensus 444 ~i~~ 447 (461)
.+..
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 5443
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.28 E-value=2.3e-12 Score=117.61 Aligned_cols=79 Identities=14% Similarity=0.001 Sum_probs=63.4
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 367 GENWSVGQRQLFCLGRVLLKRNRILILDE--ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 367 g~~lSgGq~Qrl~lARal~~~p~iliLDE--pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
...+||+++-+..+++..+.+|+++++|| |+.++|+...+.+.+++ ..++++|+++|+...-..+|+|..+.+|+
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGR 152 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcE
Confidence 34589999999999999999999999999 55556655555555554 24789999999965566799999999999
Q ss_pred EEEc
Q 012523 445 FSFN 448 (461)
Q Consensus 445 i~~~ 448 (461)
|.+-
T Consensus 153 i~~~ 156 (174)
T PRK13695 153 VYEL 156 (174)
T ss_pred EEEE
Confidence 9863
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.21 E-value=1e-10 Score=107.48 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=59.7
Q ss_pred ccCCCCCCChhHHH------HHHHHHHhhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHc-CCcEEEEEccCchh--
Q 012523 363 VSDEGENWSVGQRQ------LFCLGRVLLKRNRILILDEATASID---SATDAILQRIIREEF-PGSTVITIAHRVPT-- 430 (461)
Q Consensus 363 ~~~~g~~lSgGq~Q------rl~lARal~~~p~iliLDEpts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-- 430 (461)
.......+|+|++| +...+.+...+|+++++|||++.+| ......+.+.++... .+.|+|+++|....
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 33445678999998 4444444567899999999999999 666667777776643 47899999998764
Q ss_pred -------hhh-cCEEEEEe
Q 012523 431 -------ITD-SDMVMVLS 441 (461)
Q Consensus 431 -------~~~-~d~i~vl~ 441 (461)
++. ||.|+.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 444 89999997
No 438
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=3.7e-11 Score=137.97 Aligned_cols=79 Identities=18% Similarity=0.094 Sum_probs=70.8
Q ss_pred CCCCCChhHHHHHHHHHHhhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-
Q 012523 366 EGENWSVGQRQLFCLGRVLLK----------RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD- 433 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~lARal~~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~- 433 (461)
...+|||||++|++||+||.. +|++|+|||||++||+++...+.+.|..+. .+++|++|||.++....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 457899999999999999985 799999999999999999999999998864 47899999999998876
Q ss_pred cCEEEEEeCCE
Q 012523 434 SDMVMVLSYGS 444 (461)
Q Consensus 434 ~d~i~vl~~G~ 444 (461)
||+|.|++.|.
T Consensus 1027 ~~~i~v~~~~~ 1037 (1042)
T TIGR00618 1027 PHRILVKKTNA 1037 (1042)
T ss_pred CCEEEEEECCC
Confidence 89999997653
No 439
>PRK01156 chromosome segregation protein; Provisional
Probab=99.19 E-value=4.5e-11 Score=135.60 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=66.5
Q ss_pred CCCCCChhHHHHHHH------HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C--C-cEEEEEccCchhhhhcC
Q 012523 366 EGENWSVGQRQLFCL------GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-P--G-STVITIAHRVPTITDSD 435 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~l------ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~--~-~tvi~itH~~~~~~~~d 435 (461)
....|||||++|++| ||+++.+|++++|||||++||+.....+.+.+.... . + .|+|+|||++..+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999888888886432 1 2 48999999999998899
Q ss_pred EEEEEe
Q 012523 436 MVMVLS 441 (461)
Q Consensus 436 ~i~vl~ 441 (461)
+++.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 440
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.17 E-value=2e-11 Score=124.92 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=56.1
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce-EEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
.+|+++|+++++||+++|+||||||||||++ .|+.+|++| +|.+||.++...+..++...- +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 4899999999999999999999999999999 778888888 799999999876655432221 777754
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=99.16 E-value=6.2e-11 Score=134.33 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=66.7
Q ss_pred CCCCChhHHH------HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhhcCEEEE
Q 012523 367 GENWSVGQRQ------LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 367 g~~lSgGq~Q------rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~v 439 (461)
...|||||+| |+|+||+++.+|+++||||||++||+.....+.+.+..... +.|+|+|||++.....||++++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence 3579999999 56667788999999999999999999999999999887543 5799999999998888999999
Q ss_pred EeC
Q 012523 440 LSY 442 (461)
Q Consensus 440 l~~ 442 (461)
|+.
T Consensus 866 l~~ 868 (880)
T PRK03918 866 VSL 868 (880)
T ss_pred EEe
Confidence 983
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.15 E-value=5.1e-11 Score=118.60 Aligned_cols=138 Identities=20% Similarity=0.172 Sum_probs=92.6
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCC
Q 012523 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 332 (461)
Q Consensus 253 i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~ 332 (461)
+++.+++|+.++|+||+||||||++++|+++++|..|.+.++ +..++.... +..+.++.+.. -.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~----------~~--- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG----------GQ--- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC----------CC---
Confidence 557788999999999999999999999999999999988875 333332211 11222211100 00
Q ss_pred CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 012523 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRII 412 (461)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l 412 (461)
+ +++-...=.++++|-.+|+++++|||.+ .+ ..+.+
T Consensus 201 ----------------------------------~---~~~~~~~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~l 236 (308)
T TIGR02788 201 ----------------------------------G---LAKVTPKDLLQSCLRMRPDRIILGELRG---DE----AFDFI 236 (308)
T ss_pred ----------------------------------C---cCccCHHHHHHHHhcCCCCeEEEeccCC---HH----HHHHH
Confidence 0 0001112235557778999999999996 22 33444
Q ss_pred HHHcCC-cEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 413 REEFPG-STVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 413 ~~~~~~-~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
+....+ .+++.++|..+.....||+..|..|++...|.
T Consensus 237 ~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~ 275 (308)
T TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGL 275 (308)
T ss_pred HHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCC
Confidence 443333 46799999999777799999999988877665
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.14 E-value=2.7e-10 Score=116.86 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=114.3
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
+.++-+.++..|... ..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|+.-.
T Consensus 129 ~~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~----------- 195 (432)
T PRK06793 129 HAFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR----------- 195 (432)
T ss_pred CchheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----------
Confidence 346667777667433 3478885 999999999999999999999999999999999998877664421
Q ss_pred eEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh-----
Q 012523 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----- 385 (461)
Q Consensus 311 ~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~----- 385 (461)
++++.+. +.+...++. .|.+=..-.+-|.|+|+|.+.+.+..
T Consensus 196 ------------ev~e~~~-----------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 196 ------------EVKDFIR-----------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred ------------cHHHHHH-----------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1222211 011111111 11111223566999999999998887
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEc
Q 012523 386 --KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 386 --~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~ 448 (461)
.++-++++||||...|+. +.+-..+.+.. .+.+..+-||-....+.+-+ .++|.|..-
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~ 303 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGI 303 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEE
Confidence 678899999999999996 44444554433 36788888885555565544 468887653
No 444
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.12 E-value=8.9e-11 Score=136.66 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCCCCChhHHHHHHHHHHh----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEE
Q 012523 366 EGENWSVGQRQLFCLGRVL----LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~lARal----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
....|||||+||++|||++ +++|+++||||||++||+.+...+.+.|....++.++|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4568999999999999998 47789999999999999999999999998876678999999999998889999765
No 445
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.08 E-value=1.8e-10 Score=134.20 Aligned_cols=75 Identities=23% Similarity=0.331 Sum_probs=69.1
Q ss_pred CCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeC
Q 012523 368 ENWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
..||||||++++||++++ .+||+++||||+++||+.....+.+.|....++.++|+|||+...+..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 479999999999999998 478999999999999999999999999988777889999999999989999998864
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.08 E-value=7.7e-10 Score=98.46 Aligned_cols=129 Identities=20% Similarity=0.128 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHH
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 341 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~ 341 (461)
+++|.||+|+||||+++.+++...+..|.+.+-+.+.. ....+ ++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~---~~~~~------------------~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE---IEELT------------------ERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc---hHHHH------------------HHHhhh----------
Confidence 36899999999999999999988776666655432211 11111 000000
Q ss_pred HHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC----------CHHHHHHHHHH
Q 012523 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI----------DSATDAILQRI 411 (461)
Q Consensus 342 ~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~L----------D~~~~~~i~~~ 411 (461)
+. ...... ...+.......+.++.++++.+++...+|+++++||+++-+ |....+.+.+.
T Consensus 50 --~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 50 --SL-------KGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred --hh-------cccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 00 000000 00111111223455566788899999999999999999544 44444556555
Q ss_pred HHHHc-CCcEEEEEccCchhh
Q 012523 412 IREEF-PGSTVITIAHRVPTI 431 (461)
Q Consensus 412 l~~~~-~~~tvi~itH~~~~~ 431 (461)
..... .+.|+++++|.....
T Consensus 120 ~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHhcCCceEEEEEecCCcc
Confidence 54443 378999999987543
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.08 E-value=8.2e-10 Score=104.18 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=80.1
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC-ceEEEECCEeCCCCCHHHHhhcceEEccCCcccc-ccH
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSV 324 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti 324 (461)
..+-+|++++.++|++++|.||||+||||+++.+....-.. .|- .+ +.+ +..++++ ..+|. ...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEeccc---cEEEEecCc
Confidence 35889999999999999999999999999999887542211 111 00 000 0111111 11111 122
Q ss_pred HhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHH
Q 012523 325 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404 (461)
Q Consensus 325 ~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~ 404 (461)
.|++..+...-..| -++++-.-....+|++++||||++|+|+..
T Consensus 83 ~d~~~~~~StF~~e------------------------------------~~~~~~il~~~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 83 RDDIMKGESTFMVE------------------------------------LSETANILRHATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred ccccccCcchHHHH------------------------------------HHHHHHHHHhCCCCeEEEEecccCCCCchH
Confidence 23332111100111 122211112235789999999999999987
Q ss_pred HHHHHHH-HHHHcC--CcEEEEEccCchhhhh
Q 012523 405 DAILQRI-IREEFP--GSTVITIAHRVPTITD 433 (461)
Q Consensus 405 ~~~i~~~-l~~~~~--~~tvi~itH~~~~~~~ 433 (461)
...+... ++.+.+ ++++|++||..+....
T Consensus 127 g~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 127 GYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 6655555 443332 7899999999887654
No 448
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.07 E-value=2.8e-10 Score=108.23 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=53.1
Q ss_pred CCCChhHHHHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhh
Q 012523 368 ENWSVGQRQLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTI 431 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~ 431 (461)
..+|.|++|.+.++-+++..+ .++++|||-++|.|...+.+.+.+.+..+ +.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 346999999999998888877 89999999999999999999999987665 78999999998765
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.05 E-value=1.3e-09 Score=121.84 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=56.6
Q ss_pred hhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHc-CCcEEEEEccCchhh----------hhcCEEEEEeCCEEEEcc
Q 012523 384 LLKRNRILILDEATASI-DSATDAILQRIIREEF-PGSTVITIAHRVPTI----------TDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 384 l~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~----------~~~d~i~vl~~G~i~~~~ 449 (461)
+..+|+++++|||+.+| |+...+.+.+.++..+ .+.+++++||+++.+ +.||+.++|.+|++.+.+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccc
Confidence 35799999999999999 6888899999998754 478999999999876 469999999999986543
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.02 E-value=5.6e-10 Score=104.04 Aligned_cols=119 Identities=23% Similarity=0.245 Sum_probs=75.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCCC-ceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHH
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW 340 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~ 340 (461)
.+.|+||+||||||+++.+++.+++. .|.|..-..++. +... ....++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeecc-----------------------
Confidence 58899999999999999999888754 566655443321 1000 0011111100
Q ss_pred HHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcE
Q 012523 341 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGST 420 (461)
Q Consensus 341 ~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 420 (461)
+|.+...++. ++++++..+|+++++|||. |+++-..+.+ ....+.+
T Consensus 56 ----------------------vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~G~~ 101 (198)
T cd01131 56 ----------------------VGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAETGHL 101 (198)
T ss_pred ----------------------cCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHcCCE
Confidence 1111111111 4788999999999999996 6665443333 3345788
Q ss_pred EEEEccCchhhhhcCEEEEEe
Q 012523 421 VITIAHRVPTITDSDMVMVLS 441 (461)
Q Consensus 421 vi~itH~~~~~~~~d~i~vl~ 441 (461)
++.++|..+.....||++.+-
T Consensus 102 v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 102 VMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEEecCCcHHHHHhHHHhhc
Confidence 999999999887788887763
No 451
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.1e-09 Score=116.78 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=77.3
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhhcCEEEEE
Q 012523 364 SDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 364 ~~~g~~lSgGq~Qrl~lARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~vl 440 (461)
.....+|||||.|||.||.-+-.+= =+++||||+.||-+.-..++.+.|++++. |.|+|+|-|+.++++.||+|+-|
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDi 555 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDI 555 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEee
Confidence 4556899999999999999997763 47899999999998777788888888654 89999999999999999999998
Q ss_pred ------eCCEEEEccch
Q 012523 441 ------SYGSFSFNNVN 451 (461)
Q Consensus 441 ------~~G~i~~~~~~ 451 (461)
..|+|+.+|.-
T Consensus 556 GPgAG~~GGeIv~~Gtp 572 (935)
T COG0178 556 GPGAGEHGGEIVAEGTP 572 (935)
T ss_pred CCCCCcCCCEEEEccCH
Confidence 77999999983
No 452
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.99 E-value=9e-10 Score=126.15 Aligned_cols=78 Identities=23% Similarity=0.182 Sum_probs=67.6
Q ss_pred CCCCCCChhHHHHHHHHHHhhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-c
Q 012523 365 DEGENWSVGQRQLFCLGRVLLK--------RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-S 434 (461)
Q Consensus 365 ~~g~~lSgGq~Qrl~lARal~~--------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~ 434 (461)
....+|||||+|+++|||||.. +|++|++||||++||+.+...+++.|.... .|+||++|||.....+. .
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 3457899999999999999995 899999999999999999999999998864 57999999997777666 5
Q ss_pred CEEEEEeC
Q 012523 435 DMVMVLSY 442 (461)
Q Consensus 435 d~i~vl~~ 442 (461)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 77777654
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.98 E-value=1.8e-08 Score=86.50 Aligned_cols=117 Identities=33% Similarity=0.361 Sum_probs=80.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCc-eEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHH
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 337 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~ 337 (461)
++..+.|+||+|+||||+++.+++.+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999887754 4555554332221111100
Q ss_pred HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHH-------
Q 012523 338 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQR------- 410 (461)
Q Consensus 338 ~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~------- 410 (461)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 111122334567888888889999888899999999999999887665443
Q ss_pred HHHHHcCCcEEEEEccC
Q 012523 411 IIREEFPGSTVITIAHR 427 (461)
Q Consensus 411 ~l~~~~~~~tvi~itH~ 427 (461)
..........+|.++|.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEEeCC
Confidence 22223446788888884
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.94 E-value=1.5e-08 Score=96.97 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHHhhc--CCCEEEEeCCCCCCC---HHHHHHHHHHHHHH-cCCcEEEEEccCchh-------hhh-c
Q 012523 369 NWSVGQRQLFCLGRVLLK--RNRILILDEATASID---SATDAILQRIIREE-FPGSTVITIAHRVPT-------ITD-S 434 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~--~p~iliLDEpts~LD---~~~~~~i~~~l~~~-~~~~tvi~itH~~~~-------~~~-~ 434 (461)
..|.++++.+..++..+. +|+++++||||+.+| .+.-..+.+.++.. ..++|+++++|.... +.. +
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 346788999999999998 899999999996544 44334444445442 347899999997653 333 6
Q ss_pred CEEEEEeC
Q 012523 435 DMVMVLSY 442 (461)
Q Consensus 435 d~i~vl~~ 442 (461)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 77777764
No 455
>PRK02224 chromosome segregation protein; Provisional
Probab=98.91 E-value=2.5e-09 Score=121.25 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=66.6
Q ss_pred CCCChhHHH------HHHHHHHhhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEccCchhhhh
Q 012523 368 ENWSVGQRQ------LFCLGRVLLKR-----N-RILILDEATASIDSATDAILQRIIREEFP-G-STVITIAHRVPTITD 433 (461)
Q Consensus 368 ~~lSgGq~Q------rl~lARal~~~-----p-~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~~ 433 (461)
..||||||| |+++|+++..+ | +++||||||++||+.....+.+.|..... + .++|+|||++..+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 2 67999999999999999999998887643 3 489999999999999
Q ss_pred cCEEEEEeCCE
Q 012523 434 SDMVMVLSYGS 444 (461)
Q Consensus 434 ~d~i~vl~~G~ 444 (461)
||+++++....
T Consensus 860 ad~~~~~~~~~ 870 (880)
T PRK02224 860 ADDLVRVEKDP 870 (880)
T ss_pred cCeeEEeecCC
Confidence 99999997543
No 456
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.88 E-value=5.6e-09 Score=97.59 Aligned_cols=66 Identities=26% Similarity=0.420 Sum_probs=55.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCC------------CCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHH
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 325 (461)
++|++++|+||||||||||++.|++.++ |..|+ ++|.++..++.+++++.+ .++.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 77888 589988888888777654 577777888888
Q ss_pred hhc
Q 012523 326 TNL 328 (461)
Q Consensus 326 ~Nl 328 (461)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 774
No 457
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=91.64 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=64.9
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
...|-||-=-=-+.|.+- +.-++|||||-|+|-|.-+-.++..|++..+ |.-+|++||.+=.+.. --+|+-+++|-+
T Consensus 128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 356999987777777764 5589999999999999999899988888654 7889999999987776 578999998876
Q ss_pred EE
Q 012523 446 SF 447 (461)
Q Consensus 446 ~~ 447 (461)
.+
T Consensus 207 ~~ 208 (233)
T COG3910 207 EE 208 (233)
T ss_pred cc
Confidence 43
No 458
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.85 E-value=5e-09 Score=107.76 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=70.8
Q ss_pred CcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEEC---CEeCCCCCHHH
Q 012523 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID---GLDICSMGLKD 305 (461)
Q Consensus 229 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~---g~~i~~~~~~~ 305 (461)
..+.++.++++..|..+ ..+++.++ ++.+||+++|+||||||||||+++|+++.+|+.|.|.+. |.++.++..+.
T Consensus 136 ~p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 136 APPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 34569999999999643 45899886 999999999999999999999999999999999999885 56665554433
Q ss_pred ----HhhcceEEccCC
Q 012523 306 ----LRTKLSIIPQEP 317 (461)
Q Consensus 306 ----~r~~i~~v~Q~~ 317 (461)
.++.|++|+|..
T Consensus 214 l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 214 LADNLKKAVAVVATSD 229 (450)
T ss_pred HHHhhCCeEEEEEcCC
Confidence 235699999954
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.83 E-value=1.3e-08 Score=102.78 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcccc-----------ceeEEeeCCcEEEEE
Q 012523 198 IVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK-----------GITCTFKEGTRVGVV 266 (461)
Q Consensus 198 ~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~-----------~i~l~i~~Ge~v~iv 266 (461)
..+.+|++++++.++... ..+ . ...+.++|+||+|.||++. .+|+ |+++.|.+|++++|+
T Consensus 104 ~~~~ER~~~Ll~v~~vn~-----~~~-e--~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 104 PKEGERYFALLKVESVNG-----DDP-E--KAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred cccHhHHHHHhCCCccCC-----CCc-c--ccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 356899999998654321 111 1 2356799999999998654 6897 999999999999999
Q ss_pred cCCCCCHHHHHHHHccCCCCC
Q 012523 267 GRTGSGKTTLISALFRLVEPE 287 (461)
Q Consensus 267 G~sGsGKSTll~ll~gl~~~~ 287 (461)
||+|||||||++.+.+.+...
T Consensus 175 G~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCCChhHHHHHHHHhhccc
Confidence 999999999999999987643
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.77 E-value=1.7e-09 Score=114.18 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=95.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHH--ccCCCCCceEEEECCEeCCCCCHHHHhhc---ceEEccCCccccccHHhhcCC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENGRILIDGLDICSMGLKDLRTK---LSIIPQEPTLFRGSVRTNLDP 330 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll--~gl~~~~~G~i~i~g~~i~~~~~~~~r~~---i~~v~Q~~~lf~~ti~~Nl~~ 330 (461)
=+++|..+.|.|++|||||||..-. .|..++.+.-+++... -++++++++ +|+-.++..- .+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4789999999999999999999866 3555545566777653 244555443 4544433210 011211
Q ss_pred CCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH--HHhhcCCCEEEEeCCCCCCCHHHHHHH
Q 012523 331 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG--RVLLKRNRILILDEATASIDSATDAIL 408 (461)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA--Ral~~~p~iliLDEpts~LD~~~~~~i 408 (461)
............++..++.+.++.++ ..+|+|++||+.|+ .++..+|+.. ....+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecCchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 10001111112234445555555443 45799999999999 6666655433 3556667
Q ss_pred HHHHHHHc-CCcEEEEEccCchh--------h-hh-cCEEEEEe
Q 012523 409 QRIIREEF-PGSTVITIAHRVPT--------I-TD-SDMVMVLS 441 (461)
Q Consensus 409 ~~~l~~~~-~~~tvi~itH~~~~--------~-~~-~d~i~vl~ 441 (461)
.+.++... .++|+|+++|+.+. + +. ||.|+.|+
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 77776643 48999999998753 2 44 89999887
No 461
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.72 E-value=9.4e-08 Score=96.84 Aligned_cols=171 Identities=22% Similarity=0.288 Sum_probs=116.6
Q ss_pred EEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc-cCCCCCceEEEECCEeCCCCCHHHHhhcceEEccC
Q 012523 238 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (461)
Q Consensus 238 v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~-gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 316 (461)
|++..|..+ .+.+ +-|++| ++.|||..=-||||||++|. |.|+.--| ||.. .+ |. +
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-----------~V--VT-~ 283 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-----------FV--VT-D 283 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-----------EE--EE-C
Confidence 667776543 3554 478999 99999999999999999997 88886555 5532 11 11 1
Q ss_pred CccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 317 PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 317 ~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
+... .| .+.|. +..+.+.+..||..||.|.||.-. .-.+=||-.-|=-.|..|+-..+++|++||=
T Consensus 284 ~~av--ki--------rAEDG---R~V~~vDISpFI~~LP~g~dT~~F-sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDED 349 (448)
T PF09818_consen 284 PDAV--KI--------RAEDG---RSVEGVDISPFINNLPGGKDTTCF-STENASGSTSQAANIMEALEAGARLLLIDED 349 (448)
T ss_pred CCce--EE--------EecCC---ceEeCccchHHHhhCCCCCCCCcc-cccCCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence 1000 01 01111 234567788999999999998742 2245699999999999999999999999999
Q ss_pred CCCC-----CHHHHHHH----------HHHHHHHc--CCc-EEEEEccCchhhhhcCEEEEEeCCEE
Q 012523 397 TASI-----DSATDAIL----------QRIIREEF--PGS-TVITIAHRVPTITDSDMVMVLSYGSF 445 (461)
Q Consensus 397 ts~L-----D~~~~~~i----------~~~l~~~~--~~~-tvi~itH~~~~~~~~d~i~vl~~G~i 445 (461)
||+- |...++.+ .+.++++. .+- ||+++.---..+..||+|+.||+=+.
T Consensus 350 tsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 350 TSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred ccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 9886 54444444 12223321 244 55555555567788999999998664
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.64 E-value=2.3e-08 Score=104.21 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=46.9
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcC
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~ 329 (461)
+++.+..+++|++++++||||+||||++..|++.+.+..|. .+++++++|+ |..+..|++.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHH
Confidence 34445556789999999999999999999999988666553 1578888887 5556677774
No 463
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=4.4e-08 Score=99.65 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=56.1
Q ss_pred CCChhHHHHHHHHHHhhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh
Q 012523 369 NWSVGQRQLFCLGRVLLK---------RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT 432 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~---------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~ 432 (461)
.+|.||+++++||.+++. +||+|+||||+|+||+...+.+.+.+.+. +.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 479999999999999999 99999999999999999999999998753 579999999987654
No 464
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=2.2e-08 Score=102.93 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=61.2
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce---EEEECCEeCCCCCHHHH------hhcceEEccCCc
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG---RILIDGLDICSMGLKDL------RTKLSIIPQEPT 318 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G---~i~i~g~~i~~~~~~~~------r~~i~~v~Q~~~ 318 (461)
.+++++ +++.+|++++|+|+||||||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 589999 99999999999999999999999999999999864 33344545544333333 456899999987
Q ss_pred cccc-cHHhhc
Q 012523 319 LFRG-SVRTNL 328 (461)
Q Consensus 319 lf~~-ti~~Nl 328 (461)
.+.. ++.+++
T Consensus 223 ~~~rl~a~e~a 233 (434)
T PRK07196 223 PLMRIKATELC 233 (434)
T ss_pred hhhhHHHHHHH
Confidence 6643 566665
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.63 E-value=6.8e-07 Score=100.56 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=46.5
Q ss_pred HHHHhhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh
Q 012523 380 LGRVLLKRNRILILDEATASI-DSATDAILQRIIREEF-PGSTVITIAHRVPTIT 432 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 432 (461)
++|++..+|+++++|||+.+| |+...+.+.+.++..+ .+.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 688899999999999999999 7888889999888754 4789999999998764
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.60 E-value=3e-08 Score=91.43 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=50.9
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
..+=+.+.+++|+.++|+|||||||||+++.|+++++|+.|.|.+.+..-...+ .+..++++.|.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~ 79 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPG 79 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecC
Confidence 455566789999999999999999999999999999999999999764322221 234466665544
No 467
>PRK01889 GTPase RsgA; Reviewed
Probab=98.55 E-value=4.8e-08 Score=99.11 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=64.9
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhc
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl 328 (461)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|+..+++.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566666788999999999999999999999999999999999998754322 2335679999999999987777776
Q ss_pred CC
Q 012523 329 DP 330 (461)
Q Consensus 329 ~~ 330 (461)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 54
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.54 E-value=2.8e-07 Score=93.17 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=77.6
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 335 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~ 335 (461)
.+++..+.|.||+||||||+++.+++.+++ .+|.|..-..++.-. .......+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q-------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQ-------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEc--------------------
Confidence 457899999999999999999999987764 456666543322100 0000000000
Q ss_pred HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 012523 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREE 415 (461)
Q Consensus 336 ~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 415 (461)
..+|....+ -.=++++||-.+|+++++||+. |+++.....++ .
T Consensus 175 -------------------------~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a 217 (343)
T TIGR01420 175 -------------------------REVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA---A 217 (343)
T ss_pred -------------------------cccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---H
Confidence 001110001 1224677888999999999997 88876654443 3
Q ss_pred cCCcEEEEEccCchhhhhcCEEEEE
Q 012523 416 FPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 416 ~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
..|.+++.+.|..+.....+|+.-|
T Consensus 218 ~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 218 ETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 4578899999998877666776543
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.54 E-value=1.6e-07 Score=90.12 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=34.7
Q ss_pred hhcCCCEEEEeCCCCC------CCHHHHHHHHHHHHHHc--CCcEEEEEccCc
Q 012523 384 LLKRNRILILDEATAS------IDSATDAILQRIIREEF--PGSTVITIAHRV 428 (461)
Q Consensus 384 l~~~p~iliLDEpts~------LD~~~~~~i~~~l~~~~--~~~tvi~itH~~ 428 (461)
...+|+++|+| |+++ .|+.....+.+.+.+.. .++|+++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7654 68887777888777643 378999999975
No 470
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.52 E-value=1.3e-07 Score=95.74 Aligned_cols=87 Identities=29% Similarity=0.332 Sum_probs=60.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCC--Cc-eEEEECCEeCCCCCHHHHhhcceEEccCCc-----cccccHHhhcC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP--EN-GRILIDGLDICSMGLKDLRTKLSIIPQEPT-----LFRGSVRTNLD 329 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~--~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----lf~~ti~~Nl~ 329 (461)
++|..++|+||+||||||+++.|++.+.+ .+ +.|.....++ ++..+.++...++++|... -|...+++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999853 23 4565554444 4666666666788888643 46677888876
Q ss_pred CCC------CCCHHH-HHHHHHH
Q 012523 330 PLG------MYSDNE-IWEAMEK 345 (461)
Q Consensus 330 ~~~------~~~~~~-~~~~~~~ 345 (461)
..+ +..|.+ +..+++.
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHH
Confidence 432 233443 4456666
No 471
>PRK14079 recF recombination protein F; Provisional
Probab=98.48 E-value=3.4e-07 Score=92.78 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEE
Q 012523 369 NWSVGQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~v 439 (461)
-+|+||++++++|+.|+ .+|++++||||+|.||+.....+.+.+.... .++|..|+ .-.-||+++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~~ 337 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTLR 337 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEEE
Confidence 46999999999999998 8999999999999999999999988886532 34444443 3345899999
Q ss_pred EeCCEEEEc
Q 012523 440 LSYGSFSFN 448 (461)
Q Consensus 440 l~~G~i~~~ 448 (461)
+++|++.-.
T Consensus 338 ~~~~~~~~~ 346 (349)
T PRK14079 338 IEAGVFTPE 346 (349)
T ss_pred EeccEecCC
Confidence 999998643
No 472
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.48 E-value=1.8e-07 Score=86.29 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=46.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
|+.++|+||||||||||+++|++...| .+.+++..+........+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888888777655555667788888874
No 473
>PRK08149 ATP synthase SpaL; Validated
Probab=98.47 E-value=1.7e-07 Score=96.30 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=57.8
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCc---eEEEECCEeCCCCCHHHHh----hcceEEcc
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLR----TKLSIIPQ 315 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~---G~i~i~g~~i~~~~~~~~r----~~i~~v~Q 315 (461)
..+++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|-.+|.++.++..+.++ +++++|..
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~ 213 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYA 213 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEE
Confidence 3589999 9999999999999999999999999999999987 9999999988776655443 45666654
No 474
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.46 E-value=3.5e-08 Score=107.57 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=23.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
.+++| +.++||+|+||||+.+.+++...
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 45556 99999999999999999987653
No 475
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.46 E-value=1.2e-06 Score=90.96 Aligned_cols=177 Identities=17% Similarity=0.150 Sum_probs=106.3
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
..+++++ +++.+|++++|+|+||+|||||++.|+|..+|+.|.+...|..-+++. ++... +..+...+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l~ 218 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGLK 218 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcccccc
Confidence 3489999 999999999999999999999999999999999988777665443321 11110 01111111
Q ss_pred hcC-C---CCCCCHHHHHHHHHHccHHHHHHhCCCcccccc-cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC--CCC
Q 012523 327 NLD-P---LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQLFCLGRVLLKRNRILILDEA--TAS 399 (461)
Q Consensus 327 Nl~-~---~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~-~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp--ts~ 399 (461)
+-. . ..+..-++...+.-..-..++... .|.|-.+ -++-.++ =|.+| .++ +.+.|| +.|
T Consensus 219 ~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~--A~A~R-Eis---------l~~ge~P~~~G 284 (440)
T TIGR01026 219 RSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRF--AMAQR-EIG---------LAAGEPPATKG 284 (440)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHH--HHHHH-HHH---------HhcCCCCcccc
Confidence 110 0 111112233222222223344433 3555433 2222222 12222 111 123453 568
Q ss_pred CCHHHHHHHHHHHHHHcC-Cc-------EEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 400 IDSATDAILQRIIREEFP-GS-------TVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~~~-~~-------tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
.|+..-..+.+.+++... ++ ||++-+|++. -.-+|++.-+.+|+|+.+..
T Consensus 285 ypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~ 342 (440)
T TIGR01026 285 YTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRA 342 (440)
T ss_pred cChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecc
Confidence 999998888888877543 46 7888899873 23489999999999998665
No 476
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.42 E-value=6.6e-07 Score=101.71 Aligned_cols=79 Identities=25% Similarity=0.293 Sum_probs=66.8
Q ss_pred CCCCCChhHHHHHHHHHH------hhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhhcCE
Q 012523 366 EGENWSVGQRQLFCLGRV------LLKR--NRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDM 436 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~lARa------l~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~ 436 (461)
...+|||||+=.++||-+ +..+ -++++|||||.+||+++...+.+.|..... +.+|++|||+.+....+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 457899999876665544 4456 599999999999999999999999998655 6999999999999999999
Q ss_pred EEEEeCCE
Q 012523 437 VMVLSYGS 444 (461)
Q Consensus 437 i~vl~~G~ 444 (461)
++.++...
T Consensus 892 ~i~V~k~~ 899 (908)
T COG0419 892 RIRVKKDG 899 (908)
T ss_pred EEEEEecC
Confidence 99886543
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.40 E-value=1.4e-07 Score=87.75 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++||+||||||||||.+.|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 478
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.37 E-value=6.4e-07 Score=85.24 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=38.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHc-cCCCCCceEEEECCEeCCCCCHHHH---hhcceEEccC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQE 316 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~-gl~~~~~G~i~i~g~~i~~~~~~~~---r~~i~~v~Q~ 316 (461)
-+++|+.+.|.||+|||||||...++ ....+.++.+++... .+.+++ .+.+++.+|+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e----~~~~~i~~~~~~~g~~~~~ 76 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE----ESRESIIRQAAQFGMDFEK 76 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHhCCCHHH
Confidence 48899999999999999999988654 333455666777653 233332 2345665554
No 479
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.37 E-value=6.1e-07 Score=105.32 Aligned_cols=62 Identities=24% Similarity=0.242 Sum_probs=54.6
Q ss_pred CCCCCChhHHHHHH----HHHH--------hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCch
Q 012523 366 EGENWSVGQRQLFC----LGRV--------LLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP 429 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~----lARa--------l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 429 (461)
....|||||||+++ +|++ +..+|++++|||||+++|+.+...+++.+.+. +.++|++||++-
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 35789999999996 5755 55799999999999999999999999999887 789999999874
No 480
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.36 E-value=2.4e-06 Score=96.01 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHhhc--CCCEEEEeCC---CCCCCHHH-HHHHHHHHHHHcCCcEEEEEccCchhhhhcCE
Q 012523 371 SVGQRQLFCLGRVLLK--RNRILILDEA---TASIDSAT-DAILQRIIREEFPGSTVITIAHRVPTITDSDM 436 (461)
Q Consensus 371 SgGq~Qrl~lARal~~--~p~iliLDEp---ts~LD~~~-~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~ 436 (461)
|-=+.....+++++-+ ++.++|+||| |+.+|... ...+.+.+.+. .+++++++||..+....+++
T Consensus 668 STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 668 STFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK 738 (854)
T ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence 4444555555655554 7899999999 99999655 34455555542 25899999999766555554
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.35 E-value=1.7e-06 Score=100.90 Aligned_cols=46 Identities=35% Similarity=0.458 Sum_probs=37.8
Q ss_pred cceeEEeeCCcEEEEEcCCCCCHHHHHHHHc-cCCCCCceEEEECCE
Q 012523 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGL 296 (461)
Q Consensus 251 ~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~-gl~~~~~G~i~i~g~ 296 (461)
.-++++.+++++++|+|++|+|||||++.+. ++....+|.+++++.
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 3356777889999999999999999999995 455567899998763
No 482
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.33 E-value=8.6e-07 Score=80.97 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEE-----------CCEeCCCCCHHHHh-----hcceEEccCCccccc
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-----------DGLDICSMGLKDLR-----TKLSIIPQEPTLFRG 322 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i-----------~g~~i~~~~~~~~r-----~~i~~v~Q~~~lf~~ 322 (461)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.+++. ..++.+.|.+.++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 56565555555442 237777777655544
No 483
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.31 E-value=1.5e-05 Score=89.54 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=40.9
Q ss_pred HhhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHc-CCcEEEEEccCchhh
Q 012523 383 VLLKRNRILILDEATASID-SATDAILQRIIREEF-PGSTVITIAHRVPTI 431 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~ 431 (461)
.+-.+|.++++|||...|| +...+.+.+.++..+ .+..++++||.++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4556899999999999999 778888888888754 478999999998653
No 484
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=5.7e-07 Score=82.18 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhh-cceEEccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KLSIIPQEP 317 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~ 317 (461)
+||.++++|+|||||||+++.|++++.+ +.++|.++.. ....|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcc
Confidence 6999999999999999999999999887 6889988743 223332 345555554
No 485
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.30 E-value=3.3e-07 Score=85.99 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999999874
No 486
>PLN02796 D-glycerate 3-kinase
Probab=98.27 E-value=3.4e-07 Score=91.19 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=51.4
Q ss_pred CccccceeEEe---eCCcE-----EEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEeCCCCCHHHHhh
Q 012523 247 PLVLKGITCTF---KEGTR-----VGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT 308 (461)
Q Consensus 247 ~~~l~~i~l~i---~~Ge~-----v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~i~~~~~~~~r~ 308 (461)
..+++++++.+ ++|+. +||+|++|||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 35889999888 67887 9999999999999999999999874 688999998876555555544
No 487
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=4.6e-06 Score=71.98 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc------CCcEEEEEccCch
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF------PGSTVITIAHRVP 429 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~ 429 (461)
.+.....++...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4556666777788999999997664 5555666777776643 4678889988654
No 488
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.24 E-value=3.2e-06 Score=80.61 Aligned_cols=77 Identities=23% Similarity=0.255 Sum_probs=47.5
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHcc-CCCC------CceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFR-LVEP------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~g-l~~~------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~ 329 (461)
+++|+++.|+||+|||||||+..++. ...| .++.+++++.+ ..+.+.+.+.. |.......++.+|+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i~ 89 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNIY 89 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCEE
Confidence 78999999999999999999998863 2333 37888888765 23444443322 111112234666665
Q ss_pred CCCCCCHHHH
Q 012523 330 PLGMYSDNEI 339 (461)
Q Consensus 330 ~~~~~~~~~~ 339 (461)
.....+.+++
T Consensus 90 ~~~~~~~~~l 99 (235)
T cd01123 90 VARAYNSDHQ 99 (235)
T ss_pred EEecCCHHHH
Confidence 4433443443
No 489
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.24 E-value=2.6e-06 Score=79.40 Aligned_cols=57 Identities=35% Similarity=0.473 Sum_probs=44.5
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
+++|+||+|||||||++.+.+.+++..| +.+-..+.......++....++++|++.+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999888655 54544566555556666778999988764
No 490
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.23 E-value=4.5e-06 Score=90.65 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCce--------EEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENG--------RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 330 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G--------~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~ 330 (461)
..+.++|+||+|+||||+++++.++..+..| -+.+||.++. ++...+. .+ +|. .+.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~--------~~-llg-~~~~~~-- 240 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT--------NP-LLG-SVHDPI-- 240 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh--------HH-hcC-CccHHH--
Confidence 3567999999999999999999998865443 4778876553 2222211 01 111 111100
Q ss_pred CCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 012523 331 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQR 410 (461)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~ 410 (461)
.....+.++..++.+.. ...-..+||| +|+||| +..||+.....+.+
T Consensus 241 -----~~~a~~~l~~~gl~~~~-----------~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 241 -----YQGARRDLAETGVPEPK-----------TGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----HHHHHHHHHHcCCCchh-----------cCchhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01122223333332211 1122456777 999999 79999999999999
Q ss_pred HHHH
Q 012523 411 IIRE 414 (461)
Q Consensus 411 ~l~~ 414 (461)
.+++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
No 491
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.21 E-value=1.5e-06 Score=89.49 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=56.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeC
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i 298 (461)
+.++.++++..+..+ ..+++++ +++.+||+++|+|+||+|||||++.|+|..+++.|.+.+.|..-
T Consensus 128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 357778887777533 4599999 99999999999999999999999999999999999888877543
No 492
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.21 E-value=1.1e-05 Score=80.50 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=104.4
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHc-cCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCC
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 333 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~-gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~ 333 (461)
+-|++| +..|+|+|=-|||||++.+. |.++.--| ||.. .| |.. ..+ ..
T Consensus 238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE-----------~v--VTd-~~l------------ak 286 (554)
T COG3044 238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRE-----------RV--VTD-VKL------------AK 286 (554)
T ss_pred cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCce-----------EE--Eeh-hhh------------hh
Confidence 468899 99999999999999999997 44443222 3321 11 100 000 00
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH-----HHH---
Q 012523 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS-----ATD--- 405 (461)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~-----~~~--- 405 (461)
+..++. +...-..+..|++.||.|-+|+..-.| .-||-+.+--.|=||+=...+.|+.||=+|+... .++
T Consensus 287 aeae~g-r~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~e 364 (554)
T COG3044 287 AEAEEG-RCVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESE 364 (554)
T ss_pred hhcccc-eeeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhc
Confidence 011111 112334467899999988888865443 3599999999999999999999999999998642 211
Q ss_pred --H---HHHHHHHHHcCC-cEEEEEccCchh-hhhcCEEEEEeCCEEE
Q 012523 406 --A---ILQRIIREEFPG-STVITIAHRVPT-ITDSDMVMVLSYGSFS 446 (461)
Q Consensus 406 --~---~i~~~l~~~~~~-~tvi~itH~~~~-~~~~d~i~vl~~G~i~ 446 (461)
+ .+.+-+.+.+++ .++|.||--+.. ...+||+++|++=+=.
T Consensus 365 G~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 365 GERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred CcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 1 222223334333 688888887765 4569999999986643
No 493
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.19 E-value=3.1e-06 Score=78.07 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchh--h-hhcCEEEEEeCCEEEEc
Q 012523 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPT--I-TDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 373 Gq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~-~~~d~i~vl~~G~i~~~ 448 (461)
|+-+|..||.++..+|+.+..+| +-+||...+.+.+.+.+... +.++++.+|.+.. + ..||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~----- 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS----- 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC-----
Confidence 78899999999999999888777 78999999999888877643 4699999999854 3 459999887554
Q ss_pred cchhhHHHhH
Q 012523 449 NVNFCVQRII 458 (461)
Q Consensus 449 ~~~~~~~~~~ 458 (461)
..-|.+|++
T Consensus 134 -~~~~~~Rl~ 142 (188)
T TIGR00152 134 -PQLQLERLM 142 (188)
T ss_pred -HHHHHHHHH
Confidence 445566654
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.17 E-value=1.7e-06 Score=79.08 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
|++++|+|||||||||+++.|++.++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 789999999999999999999998753
No 495
>PRK15494 era GTPase Era; Provisional
Probab=98.17 E-value=1.2e-06 Score=88.48 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=49.8
Q ss_pred CcccEEEEeEEEEeCCCCCccccceeEEeeCCc-------EEEEEcCCCCCHHHHHHHHccCC
Q 012523 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGT-------RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 229 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge-------~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
..|.+++++++|+|+ ..+++++++++++++|+ +++++|++|+|||||++.+.|-.
T Consensus 15 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 15 FKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 467899999999998 55669999999999999 99999999999999999998753
No 496
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.16 E-value=1.4e-06 Score=89.97 Aligned_cols=70 Identities=27% Similarity=0.437 Sum_probs=53.8
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEEE---CCEeCCCCCHHHHh---hcceEE-----cc
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILI---DGLDICSMGLKDLR---TKLSII-----PQ 315 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~i---~g~~i~~~~~~~~r---~~i~~v-----~Q 315 (461)
.+++++ +++.+||+++|+|+||+|||||++.|+|..++ +.|.|.+ .|.++.++..+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 478888 99999999999999999999999999999844 4567776 44666555555444 235555 88
Q ss_pred CCc
Q 012523 316 EPT 318 (461)
Q Consensus 316 ~~~ 318 (461)
+|.
T Consensus 232 ~p~ 234 (442)
T PRK06315 232 SSQ 234 (442)
T ss_pred CHH
Confidence 774
No 497
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.14 E-value=1.8e-06 Score=80.37 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=42.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
++|++++++|+|||||||+.+.|.+.+.+ ..|.+.+||.++.. .+...++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 57899999999999999999999997655 35689999977652 2223456666654
No 498
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.13 E-value=2.2e-06 Score=90.12 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=55.9
Q ss_pred EEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC
Q 012523 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (461)
Q Consensus 235 ~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~ 299 (461)
++|++..|+. ..+++++++.+..|+.++++||+|||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 4578877753 34899999999999999999999999999999999999999999999886653
No 499
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=6.1e-06 Score=83.66 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=33.1
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++.++.+++|++++++||||+||||++..|++.+
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3677788889999999999999999999999999765
No 500
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.12 E-value=2.9e-06 Score=84.49 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=45.7
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEe
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 297 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~ 297 (461)
..+++++ +++.+|++++|+|+||+|||||+++|+|..+|+.|.+..-|.+
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 4589999 9999999999999999999999999999999999888876644
Done!