Query 012523
Match_columns 461
No_of_seqs 298 out of 2652
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 6.5E-82 2.2E-86 729.8 54.5 449 2-452 185-637 (1321)
2 4f4c_A Multidrug resistance pr 100.0 7.4E-83 2.5E-87 737.7 42.0 449 1-452 842-1300(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 2.7E-79 9.2E-84 657.0 54.1 448 2-452 112-562 (587)
4 4a82_A Cystic fibrosis transme 100.0 1.6E-79 5.4E-84 658.3 48.7 449 2-453 110-561 (578)
5 3b60_A Lipid A export ATP-bind 100.0 1.9E-78 6.6E-83 650.6 57.0 447 1-452 113-563 (582)
6 3b5x_A Lipid A export ATP-bind 100.0 2.2E-78 7.6E-83 650.1 56.8 446 2-452 114-563 (582)
7 3qf4_B Uncharacterized ABC tra 100.0 1.6E-79 5.6E-84 660.4 46.0 447 2-453 126-575 (598)
8 2yl4_A ATP-binding cassette SU 100.0 1.1E-77 3.9E-82 646.2 56.7 448 2-452 111-566 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 9.1E-76 3.1E-80 677.0 44.5 450 1-452 156-609 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 2.4E-71 8E-76 640.2 43.3 450 1-452 797-1254(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.7E-64 5.8E-69 498.3 23.7 260 189-452 13-273 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.4E-56 4.9E-61 430.4 29.1 222 230-451 5-227 (247)
13 1mv5_A LMRA, multidrug resista 100.0 5.3E-56 1.8E-60 425.8 18.6 218 233-451 2-221 (243)
14 2ghi_A Transport protein; mult 100.0 7.5E-55 2.6E-59 421.6 26.8 220 231-451 16-237 (260)
15 2ixe_A Antigen peptide transpo 100.0 1.6E-54 5.4E-59 421.7 26.1 221 231-451 15-240 (271)
16 3gd7_A Fusion complex of cysti 100.0 1.3E-54 4.3E-59 440.8 24.5 224 227-451 14-237 (390)
17 2pze_A Cystic fibrosis transme 100.0 1.5E-52 5.1E-57 398.3 24.2 208 231-451 5-213 (229)
18 2cbz_A Multidrug resistance-as 100.0 2.6E-52 8.9E-57 398.5 22.4 207 232-451 3-212 (237)
19 3tif_A Uncharacterized ABC tra 100.0 6.2E-52 2.1E-56 395.4 20.1 208 233-450 2-228 (235)
20 3gfo_A Cobalt import ATP-bindi 100.0 8.4E-52 2.9E-56 402.6 18.9 209 232-452 7-229 (275)
21 3tui_C Methionine import ATP-b 100.0 1.2E-51 4.2E-56 413.7 20.2 210 231-451 23-248 (366)
22 1ji0_A ABC transporter; ATP bi 100.0 1.5E-50 5.3E-55 387.1 24.1 211 232-450 6-222 (240)
23 2pcj_A ABC transporter, lipopr 100.0 7.6E-51 2.6E-55 385.2 19.3 206 232-450 4-222 (224)
24 4g1u_C Hemin import ATP-bindin 100.0 1.8E-50 6.2E-55 391.9 21.0 208 232-452 11-233 (266)
25 2olj_A Amino acid ABC transpor 100.0 3.4E-50 1.1E-54 389.0 21.6 206 232-450 24-242 (263)
26 1g6h_A High-affinity branched- 100.0 4.7E-50 1.6E-54 387.6 20.9 210 232-450 7-236 (257)
27 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-49 3.7E-54 384.1 22.4 207 231-451 14-230 (256)
28 1b0u_A Histidine permease; ABC 100.0 1.1E-49 3.8E-54 385.8 21.6 206 232-450 6-236 (262)
29 2yz2_A Putative ABC transporte 100.0 2E-49 6.8E-54 384.9 22.8 205 233-451 3-222 (266)
30 3fvq_A Fe(3+) IONS import ATP- 100.0 1.6E-49 5.6E-54 398.1 21.2 207 232-451 4-223 (359)
31 2bbs_A Cystic fibrosis transme 100.0 3.3E-49 1.1E-53 387.1 20.5 204 230-451 38-242 (290)
32 3rlf_A Maltose/maltodextrin im 100.0 2.2E-49 7.7E-54 399.7 19.7 205 232-451 3-218 (381)
33 2ihy_A ABC transporter, ATP-bi 100.0 2.1E-49 7E-54 386.9 18.1 207 232-451 21-247 (279)
34 2onk_A Molybdate/tungstate ABC 100.0 3.3E-49 1.1E-53 377.4 18.2 200 233-450 2-210 (240)
35 2qi9_C Vitamin B12 import ATP- 100.0 1.1E-48 3.6E-53 375.7 20.9 202 232-451 4-217 (249)
36 2yyz_A Sugar ABC transporter, 100.0 1.1E-48 3.8E-53 393.1 21.8 205 232-451 3-218 (359)
37 1z47_A CYSA, putative ABC-tran 100.0 6.7E-49 2.3E-53 393.8 19.4 205 232-450 14-229 (355)
38 2d2e_A SUFC protein; ABC-ATPas 100.0 2.3E-48 7.7E-53 374.3 21.7 208 232-451 3-228 (250)
39 1v43_A Sugar-binding transport 100.0 2.8E-48 9.4E-53 392.0 21.9 205 232-451 11-226 (372)
40 3d31_A Sulfate/molybdate ABC t 100.0 1.8E-48 6.2E-53 390.3 19.8 202 233-450 2-211 (348)
41 2it1_A 362AA long hypothetical 100.0 1.2E-48 4.3E-53 393.1 18.2 205 232-451 3-218 (362)
42 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-48 3.8E-53 393.1 17.0 207 232-451 3-225 (353)
43 1g29_1 MALK, maltose transport 100.0 3.9E-48 1.3E-52 391.4 18.1 205 232-451 3-224 (372)
44 2zu0_C Probable ATP-dependent 100.0 1E-47 3.6E-52 372.9 19.0 211 232-451 20-249 (267)
45 2pjz_A Hypothetical protein ST 100.0 1.9E-47 6.3E-52 369.8 17.9 200 233-451 2-210 (263)
46 2nq2_C Hypothetical ABC transp 100.0 3.5E-47 1.2E-51 366.3 18.1 193 232-450 4-211 (253)
47 1sgw_A Putative ABC transporte 100.0 1.6E-47 5.5E-52 359.2 12.6 193 232-445 10-210 (214)
48 2iw3_A Elongation factor 3A; a 100.0 2.4E-38 8.1E-43 350.4 15.4 198 232-453 671-984 (986)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.8E-38 1.3E-42 333.9 13.2 193 232-451 287-488 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 5.9E-38 2E-42 336.0 13.9 193 232-451 357-558 (607)
51 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-37 5.2E-42 328.6 15.7 186 231-442 268-461 (538)
52 3bk7_A ABC transporter ATP-bin 100.0 1.3E-37 4.5E-42 333.3 9.7 197 232-443 83-304 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-37 5.4E-42 329.2 7.5 196 233-443 21-234 (538)
54 3j16_B RLI1P; ribosome recycli 100.0 1E-35 3.5E-40 318.2 15.0 190 236-450 350-553 (608)
55 2iw3_A Elongation factor 3A; a 100.0 2E-34 7E-39 319.0 22.9 189 232-450 435-629 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 1.8E-35 6.3E-40 322.1 12.1 196 247-451 31-293 (670)
57 2v9p_A Replication protein E1; 100.0 4.4E-39 1.5E-43 316.2 -16.3 205 182-453 56-263 (305)
58 3j16_B RLI1P; ribosome recycli 100.0 2.7E-35 9.1E-40 314.9 10.2 196 237-445 82-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-35 4.6E-40 313.7 6.3 192 237-444 4-214 (538)
60 3ux8_A Excinuclease ABC, A sub 100.0 1.5E-34 5.1E-39 314.9 12.1 194 247-452 335-636 (670)
61 4aby_A DNA repair protein RECN 100.0 4.2E-33 1.4E-37 286.7 12.7 199 249-448 50-380 (415)
62 3pih_A Uvrabc system protein A 100.0 2.9E-32 9.8E-37 301.6 15.9 195 248-452 598-898 (916)
63 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.8E-35 9.5E-40 305.5 -14.1 185 233-452 119-334 (460)
64 2vf7_A UVRA2, excinuclease ABC 100.0 2E-31 6.8E-36 292.6 13.0 208 231-451 501-822 (842)
65 2r6f_A Excinuclease ABC subuni 100.0 3.1E-30 1.1E-34 283.6 15.9 204 231-451 628-937 (972)
66 2ygr_A Uvrabc system protein A 100.0 4.2E-30 1.4E-34 283.5 13.2 204 231-451 646-955 (993)
67 1e69_A Chromosome segregation 100.0 3.9E-29 1.3E-33 248.9 15.6 196 251-447 16-303 (322)
68 3b85_A Phosphate starvation-in 100.0 6.4E-31 2.2E-35 245.5 -4.7 157 248-444 14-171 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.8E-27 2.3E-31 236.5 16.4 83 365-447 275-364 (365)
70 4gp7_A Metallophosphoesterase; 99.9 7.2E-28 2.5E-32 218.0 2.7 150 252-438 1-169 (171)
71 1ye8_A Protein THEP1, hypothet 99.9 1.5E-27 5.2E-32 217.3 3.4 147 262-447 2-159 (178)
72 2pt7_A CAG-ALFA; ATPase, prote 99.9 4.7E-28 1.6E-32 241.7 -4.1 141 235-445 151-292 (330)
73 1z6g_A Guanylate kinase; struc 99.9 5.1E-29 1.7E-33 234.5 -11.3 168 249-442 12-193 (218)
74 1tq4_A IIGP1, interferon-induc 99.9 5.9E-28 2E-32 246.6 -7.8 173 248-444 37-255 (413)
75 2dpy_A FLII, flagellum-specifi 99.9 2.5E-27 8.6E-32 244.5 -10.6 190 231-451 130-339 (438)
76 3sop_A Neuronal-specific septi 99.9 1.1E-25 3.8E-30 218.3 -2.1 150 262-432 4-154 (270)
77 3b9q_A Chloroplast SRP recepto 99.9 3.6E-26 1.2E-30 225.1 -7.4 186 250-457 90-296 (302)
78 1znw_A Guanylate kinase, GMP k 99.9 4E-26 1.4E-30 212.7 -7.1 168 246-441 8-202 (207)
79 2og2_A Putative signal recogni 99.9 4.4E-25 1.5E-29 221.5 -6.2 186 251-458 148-354 (359)
80 3aez_A Pantothenate kinase; tr 99.9 1.6E-25 5.5E-30 221.5 -9.4 177 230-443 41-245 (312)
81 2o5v_A DNA replication and rep 99.9 7.3E-22 2.5E-26 198.4 14.5 78 369-451 265-351 (359)
82 2obl_A ESCN; ATPase, hydrolase 99.9 2.5E-23 8.4E-28 208.6 1.4 190 231-450 44-249 (347)
83 1tf7_A KAIC; homohexamer, hexa 99.9 6.6E-24 2.3E-28 224.7 -4.2 167 247-443 25-210 (525)
84 2i3b_A HCR-ntpase, human cance 99.9 4.7E-24 1.6E-28 196.0 -6.2 158 260-448 1-168 (189)
85 2f1r_A Molybdopterin-guanine d 99.8 5.1E-24 1.7E-28 192.5 -6.4 111 261-391 3-125 (171)
86 2eyu_A Twitching motility prot 99.8 1.7E-22 5.6E-27 195.0 2.9 141 233-442 6-147 (261)
87 3qkt_A DNA double-strand break 99.8 1.9E-20 6.6E-25 187.4 16.9 79 366-444 245-332 (339)
88 4ad8_A DNA repair protein RECN 99.8 2.8E-21 9.5E-26 204.2 10.6 77 368-444 395-474 (517)
89 1cr0_A DNA primase/helicase; R 99.8 4.2E-21 1.4E-25 188.3 7.7 181 248-445 23-237 (296)
90 2o8b_B DNA mismatch repair pro 99.8 3.9E-21 1.3E-25 216.1 7.6 165 231-446 749-930 (1022)
91 1tf7_A KAIC; homohexamer, hexa 99.8 2.5E-21 8.4E-26 205.0 4.0 153 254-444 275-444 (525)
92 2ewv_A Twitching motility prot 99.8 8.5E-24 2.9E-28 214.2 -14.5 175 248-430 126-353 (372)
93 2ehv_A Hypothetical protein PH 99.8 6.7E-22 2.3E-26 188.3 -1.9 180 233-441 7-206 (251)
94 3pih_A Uvrabc system protein A 99.8 1.7E-20 5.9E-25 207.6 7.0 163 275-451 383-555 (916)
95 1w1w_A Structural maintenance 99.8 7.8E-20 2.7E-24 188.8 10.3 73 369-441 333-410 (430)
96 1lvg_A Guanylate kinase, GMP k 99.8 2.4E-23 8.1E-28 192.7 -14.8 158 258-442 2-173 (198)
97 4a74_A DNA repair and recombin 99.8 4.3E-20 1.5E-24 173.5 6.6 148 256-444 21-201 (231)
98 2jeo_A Uridine-cytidine kinase 99.8 1.7E-21 5.7E-26 186.2 -4.0 159 246-444 11-180 (245)
99 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 3.1E-19 1.1E-23 157.1 10.4 81 365-445 53-142 (148)
100 1pzn_A RAD51, DNA repair and r 99.8 1.6E-20 5.4E-25 188.6 2.3 161 249-450 119-309 (349)
101 3thx_A DNA mismatch repair pro 99.8 2.4E-19 8.4E-24 199.3 11.5 161 231-449 630-806 (934)
102 1ewq_A DNA mismatch repair pro 99.8 3.9E-20 1.3E-24 202.2 5.0 145 231-434 549-704 (765)
103 2vf7_A UVRA2, excinuclease ABC 99.8 8.5E-20 2.9E-24 200.5 7.4 173 268-450 270-469 (842)
104 1lw7_A Transcriptional regulat 99.8 2.6E-21 8.9E-26 195.7 -5.6 147 249-397 157-329 (365)
105 1pui_A ENGB, probable GTP-bind 99.8 2.7E-20 9.4E-25 172.4 0.7 169 233-416 4-197 (210)
106 3jvv_A Twitching mobility prot 99.8 8.8E-20 3E-24 183.3 4.1 147 236-443 92-246 (356)
107 3asz_A Uridine kinase; cytidin 99.8 9.9E-22 3.4E-26 182.9 -10.5 139 257-428 3-161 (211)
108 3szr_A Interferon-induced GTP- 99.8 1.2E-20 4.2E-25 202.6 -4.9 185 232-450 10-231 (608)
109 2r6f_A Excinuclease ABC subuni 99.8 8.7E-19 3E-23 193.0 8.9 88 363-450 498-594 (972)
110 2qnr_A Septin-2, protein NEDD5 99.7 8.2E-20 2.8E-24 179.8 -1.1 161 236-429 2-168 (301)
111 1rj9_A FTSY, signal recognitio 99.7 1.9E-19 6.6E-24 177.1 0.8 174 259-457 101-297 (304)
112 2qag_C Septin-7; cell cycle, c 99.7 2.2E-19 7.6E-24 183.7 0.6 166 231-431 10-180 (418)
113 3thx_B DNA mismatch repair pro 99.7 1.5E-18 5.3E-23 192.3 5.2 158 232-437 640-805 (918)
114 2w0m_A SSO2452; RECA, SSPF, un 99.7 2.5E-18 8.5E-23 161.3 5.4 165 248-444 10-193 (235)
115 3kta_B Chromosome segregation 99.7 5.5E-17 1.9E-21 146.4 12.7 84 367-450 62-151 (173)
116 2gza_A Type IV secretion syste 99.7 5.9E-20 2E-24 185.4 -7.7 148 234-383 137-301 (361)
117 2ygr_A Uvrabc system protein A 99.7 1.1E-17 3.7E-22 185.0 9.2 88 363-450 515-611 (993)
118 2qag_B Septin-6, protein NEDD5 99.7 1.8E-17 6E-22 169.2 4.7 180 232-427 16-218 (427)
119 1wb9_A DNA mismatch repair pro 99.7 1.5E-17 5.1E-22 182.8 3.9 163 232-447 577-749 (800)
120 1s96_A Guanylate kinase, GMP k 99.7 2.1E-17 7.2E-22 155.1 3.2 132 254-443 10-151 (219)
121 1odf_A YGR205W, hypothetical 3 99.6 9.4E-19 3.2E-23 171.2 -9.0 129 258-404 29-169 (290)
122 1zp6_A Hypothetical protein AT 99.6 3.1E-18 1E-22 156.5 -5.2 151 256-427 5-159 (191)
123 2cvh_A DNA repair and recombin 99.6 4E-16 1.4E-20 145.3 8.7 151 248-443 7-185 (220)
124 1nlf_A Regulatory protein REPA 99.6 3.4E-16 1.2E-20 152.1 8.5 150 257-431 27-184 (279)
125 1nij_A Hypothetical protein YJ 99.6 1.1E-17 3.9E-22 165.8 -2.6 153 261-429 5-190 (318)
126 1n0w_A DNA repair protein RAD5 99.6 1.1E-15 3.6E-20 144.6 8.8 146 256-443 20-209 (243)
127 3c8u_A Fructokinase; YP_612366 99.6 1.5E-18 5.2E-23 161.4 -11.4 117 257-397 19-140 (208)
128 2qm8_A GTPase/ATPase; G protei 99.5 1.6E-17 5.3E-22 166.0 -10.3 177 233-415 30-258 (337)
129 2bbw_A Adenylate kinase 4, AK4 99.5 4.2E-16 1.4E-20 148.6 -4.1 146 259-416 26-197 (246)
130 2bdt_A BH3686; alpha-beta prot 99.5 3.5E-17 1.2E-21 149.4 -11.5 161 260-450 2-178 (189)
131 1sxj_E Activator 1 40 kDa subu 99.5 1.9E-14 6.4E-19 144.0 6.8 138 262-431 38-177 (354)
132 1htw_A HI0065; nucleotide-bind 99.5 1E-15 3.5E-20 136.2 -2.9 86 236-329 11-96 (158)
133 3e70_C DPA, signal recognition 99.5 1.8E-14 6.2E-19 143.0 5.5 178 256-458 125-319 (328)
134 3auy_A DNA double-strand break 99.5 8.9E-14 3E-18 140.7 10.4 74 368-441 279-359 (371)
135 2yhs_A FTSY, cell division pro 99.5 3.9E-14 1.3E-18 146.4 6.6 182 250-458 283-489 (503)
136 3lda_A DNA repair protein RAD5 99.5 7.8E-14 2.7E-18 141.9 8.4 145 256-444 174-364 (400)
137 2oap_1 GSPE-2, type II secreti 99.4 1.9E-16 6.6E-21 166.2 -11.6 172 248-435 248-458 (511)
138 1p9r_A General secretion pathw 99.4 1.1E-16 3.9E-21 163.8 -13.2 127 249-392 158-314 (418)
139 2rcn_A Probable GTPase ENGC; Y 99.4 1.7E-14 5.8E-19 144.3 1.1 121 249-384 205-328 (358)
140 2kjq_A DNAA-related protein; s 99.4 1.3E-13 4.4E-18 121.4 5.8 91 249-427 30-124 (149)
141 3ec2_A DNA replication protein 99.4 3.9E-14 1.3E-18 128.1 1.4 111 254-429 32-144 (180)
142 2x8a_A Nuclear valosin-contain 99.4 1.6E-15 5.5E-20 147.1 -10.7 143 248-413 34-191 (274)
143 2yv5_A YJEQ protein; hydrolase 99.3 1.9E-13 6.5E-18 134.3 1.7 113 256-382 161-300 (302)
144 1sq5_A Pantothenate kinase; P- 99.3 1.1E-14 3.7E-19 143.7 -7.6 89 231-328 36-149 (308)
145 1udx_A The GTP-binding protein 99.3 2.8E-13 9.6E-18 138.5 0.1 153 250-426 147-306 (416)
146 1u0l_A Probable GTPase ENGC; p 99.3 1.3E-12 4.5E-17 128.3 3.5 102 255-357 164-290 (301)
147 3tr0_A Guanylate kinase, GMP k 99.2 1.1E-11 3.9E-16 113.8 7.4 71 254-328 1-72 (205)
148 1ls1_A Signal recognition part 99.2 6.6E-12 2.2E-16 122.9 4.5 142 233-425 77-219 (295)
149 3lnc_A Guanylate kinase, GMP k 99.2 2E-13 6.7E-18 128.7 -6.5 38 249-286 16-54 (231)
150 2px0_A Flagellar biosynthesis 99.1 4.5E-11 1.5E-15 117.0 6.8 139 258-448 103-247 (296)
151 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1E-13 3.4E-18 140.5 -12.7 167 256-449 16-206 (392)
152 1vma_A Cell division protein F 99.1 4.1E-11 1.4E-15 117.7 6.3 98 253-398 97-197 (306)
153 3euj_A Chromosome partition pr 99.1 2.3E-11 7.9E-16 126.0 4.0 53 249-302 19-71 (483)
154 1cke_A CK, MSSA, protein (cyti 99.1 1E-12 3.5E-17 122.9 -7.1 127 260-397 5-150 (227)
155 1t9h_A YLOQ, probable GTPase E 99.1 7.7E-12 2.6E-16 122.7 -1.7 72 255-328 168-247 (307)
156 4e22_A Cytidylate kinase; P-lo 99.0 1.7E-11 5.7E-16 117.2 -0.4 72 258-329 25-114 (252)
157 1oix_A RAS-related protein RAB 99.0 3.6E-11 1.2E-15 109.5 1.8 142 262-414 31-188 (191)
158 1in4_A RUVB, holliday junction 99.0 3.4E-14 1.2E-18 141.6 -21.8 156 233-415 19-192 (334)
159 3a00_A Guanylate kinase, GMP k 99.0 8.5E-11 2.9E-15 106.8 2.5 127 260-395 1-169 (186)
160 1qhl_A Protein (cell division 99.0 7.4E-12 2.5E-16 117.6 -5.5 75 232-316 9-91 (227)
161 1iy2_A ATP-dependent metallopr 99.0 7.8E-13 2.7E-17 128.1 -12.7 137 233-397 50-195 (278)
162 2dr3_A UPF0273 protein PH0284; 99.0 3E-10 1E-14 107.0 5.1 166 249-442 11-196 (247)
163 2zr9_A Protein RECA, recombina 99.0 1.3E-09 4.3E-14 109.1 9.9 143 256-450 57-237 (349)
164 3k1j_A LON protease, ATP-depen 98.9 5.3E-11 1.8E-15 127.8 -1.4 156 247-414 47-227 (604)
165 1ixz_A ATP-dependent metallopr 98.9 2.3E-12 7.9E-17 122.9 -12.7 138 233-398 26-172 (254)
166 2ius_A DNA translocase FTSK; n 98.9 8.4E-11 2.9E-15 122.7 -2.9 161 252-429 159-343 (512)
167 2r6a_A DNAB helicase, replicat 98.9 2E-09 7E-14 111.5 7.5 177 248-445 191-401 (454)
168 2dy1_A Elongation factor G; tr 98.9 1.2E-09 4E-14 118.5 5.8 75 254-329 3-79 (665)
169 1svm_A Large T antigen; AAA+ f 98.8 7E-11 2.4E-15 119.2 -7.0 136 248-398 157-312 (377)
170 2f9l_A RAB11B, member RAS onco 98.8 3.1E-09 1.1E-13 97.0 4.4 37 262-298 7-54 (199)
171 3ney_A 55 kDa erythrocyte memb 98.8 1.2E-09 4.1E-14 100.2 1.4 83 254-344 13-108 (197)
172 1kgd_A CASK, peripheral plasma 98.7 1.6E-09 5.3E-14 97.9 0.3 68 258-328 3-81 (180)
173 2ce7_A Cell division protein F 98.6 4.3E-08 1.5E-12 101.7 8.4 114 248-431 39-167 (476)
174 2qt1_A Nicotinamide riboside k 98.6 9.7E-09 3.3E-13 94.5 2.8 51 253-329 14-64 (207)
175 3nwj_A ATSK2; P loop, shikimat 98.6 3.2E-09 1.1E-13 101.2 -0.8 52 232-284 17-72 (250)
176 2j41_A Guanylate kinase; GMP, 98.6 1.2E-08 4.2E-13 93.4 2.9 63 255-320 1-63 (207)
177 4eun_A Thermoresistant glucoki 98.6 4.7E-09 1.6E-13 96.3 -0.4 62 254-320 23-84 (200)
178 2qtf_A Protein HFLX, GTP-bindi 98.6 2.7E-08 9.4E-13 99.9 4.5 142 262-415 181-351 (364)
179 3uie_A Adenylyl-sulfate kinase 98.6 1.5E-09 5.2E-14 99.6 -4.4 60 237-299 4-65 (200)
180 2dhr_A FTSH; AAA+ protein, hex 98.5 3.2E-09 1.1E-13 110.8 -4.8 138 233-398 41-187 (499)
181 1zu4_A FTSY; GTPase, signal re 98.5 2.2E-08 7.6E-13 98.8 0.5 68 250-317 95-172 (320)
182 3kta_A Chromosome segregation 98.4 3.3E-08 1.1E-12 88.9 0.1 67 251-318 18-90 (182)
183 3tau_A Guanylate kinase, GMP k 98.4 5E-08 1.7E-12 90.1 1.2 35 258-292 6-41 (208)
184 3t34_A Dynamin-related protein 98.4 3.2E-07 1.1E-11 91.9 6.5 46 248-296 25-72 (360)
185 2vp4_A Deoxynucleoside kinase; 98.4 2.1E-08 7E-13 94.2 -2.6 64 254-321 14-87 (230)
186 3hr8_A Protein RECA; alpha and 98.3 5.5E-07 1.9E-11 89.9 7.0 60 256-318 57-117 (356)
187 2e87_A Hypothetical protein PH 98.3 6.5E-07 2.2E-11 89.6 7.2 61 368-429 230-293 (357)
188 3vaa_A Shikimate kinase, SK; s 98.3 2.1E-07 7.3E-12 85.0 3.2 39 246-284 11-49 (199)
189 1jjv_A Dephospho-COA kinase; P 98.3 1.8E-07 6.1E-12 85.8 2.0 68 371-441 61-131 (206)
190 2xau_A PRE-mRNA-splicing facto 98.3 7.7E-07 2.6E-11 97.9 6.9 66 368-433 189-257 (773)
191 3cr8_A Sulfate adenylyltranfer 98.2 8.4E-08 2.9E-12 101.3 -2.9 61 256-316 365-437 (552)
192 4a1f_A DNAB helicase, replicat 98.2 2.5E-06 8.7E-11 84.5 7.8 103 249-401 35-141 (338)
193 3ice_A Transcription terminati 98.2 2.6E-07 8.8E-12 92.3 0.2 54 230-284 131-198 (422)
194 1rz3_A Hypothetical protein rb 98.2 3.7E-07 1.3E-11 83.6 1.1 47 256-302 18-64 (201)
195 3kl4_A SRP54, signal recogniti 98.1 2.2E-06 7.4E-11 87.7 6.7 40 259-298 96-135 (433)
196 2z43_A DNA repair and recombin 98.1 1.8E-06 6.3E-11 85.1 6.0 28 256-283 103-130 (324)
197 2ffh_A Protein (FFH); SRP54, s 98.1 1.8E-06 6.2E-11 88.1 5.9 181 235-447 79-277 (425)
198 1knq_A Gluconate kinase; ALFA/ 98.1 4.9E-07 1.7E-11 80.5 1.4 53 258-316 6-59 (175)
199 3tqc_A Pantothenate kinase; bi 98.0 7.4E-07 2.5E-11 87.7 -0.1 45 248-292 74-126 (321)
200 1fnn_A CDC6P, cell division co 98.0 9.7E-06 3.3E-10 81.1 7.9 45 386-431 124-172 (389)
201 1sxj_C Activator 1 40 kDa subu 97.9 1.5E-06 5.2E-11 86.1 0.6 42 248-289 32-75 (340)
202 1v5w_A DMC1, meiotic recombina 97.9 7E-06 2.4E-10 81.6 5.0 28 256-283 118-145 (343)
203 3b9p_A CG5977-PA, isoform A; A 97.9 9.5E-05 3.3E-09 71.3 12.3 70 371-440 97-186 (297)
204 1ypw_A Transitional endoplasmi 97.9 2.6E-06 9.1E-11 94.1 0.9 32 255-286 233-264 (806)
205 3m6a_A ATP-dependent protease 97.9 2.5E-06 8.5E-11 90.2 0.6 80 235-317 86-165 (543)
206 1ega_A Protein (GTP-binding pr 97.8 4E-06 1.4E-10 81.9 1.6 144 259-432 7-163 (301)
207 2z4s_A Chromosomal replication 97.8 1.8E-05 6.1E-10 81.4 6.1 42 387-428 194-237 (440)
208 3lxx_A GTPase IMAP family memb 97.8 0.00011 3.8E-09 68.6 11.0 28 262-289 31-58 (239)
209 1f6b_A SAR1; gtpases, N-termin 97.8 7.8E-06 2.7E-10 74.3 2.5 58 239-298 6-71 (198)
210 2pez_A Bifunctional 3'-phospho 97.8 3.7E-06 1.3E-10 75.1 0.1 40 258-298 3-44 (179)
211 1mky_A Probable GTP-binding pr 97.8 1.2E-05 4.2E-10 82.6 3.9 61 261-321 181-253 (439)
212 2p67_A LAO/AO transport system 97.8 3E-06 1E-10 84.2 -0.7 51 248-298 44-94 (341)
213 1kag_A SKI, shikimate kinase I 97.7 1.2E-05 4E-10 71.2 2.4 33 259-295 3-35 (173)
214 4eaq_A DTMP kinase, thymidylat 97.7 9.8E-06 3.3E-10 75.9 1.9 44 250-294 13-59 (229)
215 2qby_A CDC6 homolog 1, cell di 97.7 1.7E-05 5.8E-10 79.0 3.6 30 258-287 43-72 (386)
216 3bh0_A DNAB-like replicative h 97.7 0.00015 5.1E-09 71.1 9.9 33 249-281 57-89 (315)
217 1m7g_A Adenylylsulfate kinase; 97.7 5.3E-06 1.8E-10 76.4 -0.6 43 255-297 20-64 (211)
218 3r20_A Cytidylate kinase; stru 97.6 1.3E-05 4.3E-10 75.3 1.9 70 260-329 9-96 (233)
219 2qor_A Guanylate kinase; phosp 97.6 8.5E-06 2.9E-10 74.5 0.3 30 256-285 8-37 (204)
220 2www_A Methylmalonic aciduria 97.6 1.1E-05 3.7E-10 80.5 1.1 42 258-299 72-113 (349)
221 4fcw_A Chaperone protein CLPB; 97.6 7.5E-05 2.6E-09 72.4 6.6 32 260-291 47-78 (311)
222 2gj8_A MNME, tRNA modification 97.6 5.2E-05 1.8E-09 67.1 4.8 27 258-284 2-28 (172)
223 1lv7_A FTSH; alpha/beta domain 97.6 0.00024 8.3E-09 67.0 9.8 35 249-285 36-70 (257)
224 3llm_A ATP-dependent RNA helic 97.6 4.8E-05 1.6E-09 71.1 4.8 136 257-429 73-221 (235)
225 1m2o_B GTP-binding protein SAR 97.6 5.2E-05 1.8E-09 68.2 4.6 49 249-298 13-69 (190)
226 1l8q_A Chromosomal replication 97.5 6.7E-05 2.3E-09 73.6 5.6 28 259-286 36-63 (324)
227 1sxj_D Activator 1 41 kDa subu 97.5 1.7E-05 5.8E-10 78.3 0.7 43 387-430 133-175 (353)
228 1u94_A RECA protein, recombina 97.5 0.00057 1.9E-08 68.1 11.8 34 249-283 50-86 (356)
229 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.8E-05 2E-09 65.7 3.8 30 251-281 15-44 (149)
230 3cf0_A Transitional endoplasmi 97.4 0.00032 1.1E-08 68.1 8.7 31 255-285 44-74 (301)
231 2w58_A DNAI, primosome compone 97.4 8.6E-05 2.9E-09 67.4 4.0 26 261-286 55-80 (202)
232 3h4m_A Proteasome-activating n 97.4 0.00035 1.2E-08 66.8 8.4 28 257-284 48-75 (285)
233 1y63_A LMAJ004144AAA protein; 97.3 9.2E-05 3.1E-09 66.4 3.0 32 252-283 2-33 (184)
234 1j8m_F SRP54, signal recogniti 97.3 2.6E-05 9.1E-10 75.9 -0.7 47 253-300 92-138 (297)
235 3bos_A Putative DNA replicatio 97.3 6.1E-05 2.1E-09 69.7 1.7 27 259-285 51-77 (242)
236 2eyu_A Twitching motility prot 97.3 1.2E-07 3.9E-12 91.0 -17.4 74 354-429 157-241 (261)
237 3n70_A Transport activator; si 97.3 0.00064 2.2E-08 58.4 7.9 41 387-428 76-116 (145)
238 1njg_A DNA polymerase III subu 97.2 0.00029 1E-08 64.5 5.7 45 386-431 125-169 (250)
239 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00015 5E-09 73.2 3.8 41 256-296 18-69 (396)
240 2wji_A Ferrous iron transport 97.2 0.00031 1.1E-08 61.3 5.4 25 261-285 4-28 (165)
241 4dcu_A GTP-binding protein ENG 97.2 0.00041 1.4E-08 71.5 7.1 57 372-431 87-144 (456)
242 2yvu_A Probable adenylyl-sulfa 97.2 8.2E-05 2.8E-09 66.7 1.6 39 257-295 10-49 (186)
243 2qag_A Septin-2, protein NEDD5 97.2 3.7E-05 1.3E-09 77.0 -1.0 58 230-295 15-72 (361)
244 2wjg_A FEOB, ferrous iron tran 97.2 0.00022 7.6E-09 63.3 4.0 23 261-283 8-30 (188)
245 2p5t_B PEZT; postsegregational 97.1 0.00011 3.6E-09 69.7 1.0 46 250-298 23-68 (253)
246 2zej_A Dardarin, leucine-rich 97.1 0.00029 9.9E-09 62.7 3.5 26 262-287 4-29 (184)
247 3t61_A Gluconokinase; PSI-biol 97.1 0.0001 3.5E-09 67.0 0.5 35 260-298 18-52 (202)
248 3qks_A DNA double-strand break 97.1 0.00032 1.1E-08 64.1 3.8 29 252-281 16-44 (203)
249 2i1q_A DNA repair and recombin 97.0 0.00041 1.4E-08 68.0 4.7 27 256-282 94-120 (322)
250 1np6_A Molybdopterin-guanine d 97.0 0.00021 7.2E-09 63.8 2.1 38 260-297 6-46 (174)
251 2if2_A Dephospho-COA kinase; a 97.0 0.00028 9.6E-09 64.0 2.7 21 262-282 3-23 (204)
252 1ex7_A Guanylate kinase; subst 97.0 0.00021 7.2E-09 64.5 1.7 45 263-309 4-61 (186)
253 3uk6_A RUVB-like 2; hexameric 96.9 0.0023 8E-08 63.3 8.4 38 258-295 68-105 (368)
254 3dm5_A SRP54, signal recogniti 96.8 0.005 1.7E-07 62.8 10.8 35 259-293 99-133 (443)
255 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0052 1.8E-07 57.5 10.2 27 258-284 37-63 (262)
256 3cm0_A Adenylate kinase; ATP-b 96.8 0.00049 1.7E-08 61.3 2.8 26 258-283 2-27 (186)
257 2ewv_A Twitching motility prot 96.8 0.00045 1.5E-08 69.3 2.8 58 377-440 199-256 (372)
258 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00019 6.4E-09 71.2 -0.0 37 248-284 10-48 (359)
259 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00044 1.5E-08 69.7 2.7 57 387-443 262-335 (392)
260 3ihw_A Centg3; RAS, centaurin, 96.8 0.0012 4.2E-08 58.7 5.1 36 262-297 22-66 (184)
261 1qhx_A CPT, protein (chloramph 96.8 0.00074 2.5E-08 59.6 3.5 27 259-285 2-28 (178)
262 3syl_A Protein CBBX; photosynt 96.7 0.013 4.5E-07 56.3 12.6 25 260-284 67-91 (309)
263 2chg_A Replication factor C sm 96.7 0.0022 7.7E-08 57.8 6.7 43 387-430 102-144 (226)
264 3d8b_A Fidgetin-like protein 1 96.7 0.0048 1.6E-07 61.3 9.3 27 258-284 115-141 (357)
265 1xp8_A RECA protein, recombina 96.7 0.0079 2.7E-07 60.0 10.7 27 256-282 70-96 (366)
266 1uf9_A TT1252 protein; P-loop, 96.7 0.0007 2.4E-08 61.0 2.7 32 260-296 8-39 (203)
267 1q3t_A Cytidylate kinase; nucl 96.7 0.00083 2.8E-08 62.6 3.2 26 257-282 13-38 (236)
268 2jaq_A Deoxyguanosine kinase; 96.6 0.00076 2.6E-08 60.7 2.8 23 262-284 2-24 (205)
269 3kb2_A SPBC2 prophage-derived 96.6 0.0009 3.1E-08 58.5 3.1 23 262-284 3-25 (173)
270 2v1u_A Cell division control p 96.6 0.0009 3.1E-08 66.4 3.5 28 258-285 42-69 (387)
271 1fzq_A ADP-ribosylation factor 96.6 0.0011 3.6E-08 58.9 3.4 24 260-283 16-39 (181)
272 1gtv_A TMK, thymidylate kinase 96.6 0.00027 9.2E-09 64.4 -0.8 26 262-287 2-27 (214)
273 1kht_A Adenylate kinase; phosp 96.6 0.0011 3.9E-08 58.9 3.4 26 259-284 2-27 (192)
274 1jal_A YCHF protein; nucleotid 96.6 0.0015 5.2E-08 65.1 4.5 36 260-295 2-48 (363)
275 3trf_A Shikimate kinase, SK; a 96.5 0.0013 4.3E-08 58.5 3.3 26 259-284 4-29 (185)
276 1gvn_B Zeta; postsegregational 96.5 0.0012 4.1E-08 63.7 3.3 35 259-295 32-66 (287)
277 2rhm_A Putative kinase; P-loop 96.5 0.0012 4.1E-08 58.9 3.0 27 258-284 3-29 (193)
278 1ko7_A HPR kinase/phosphatase; 96.5 0.0011 3.9E-08 64.5 3.0 47 248-295 133-183 (314)
279 3lw7_A Adenylate kinase relate 96.5 0.0013 4.6E-08 57.2 3.2 19 262-280 3-21 (179)
280 2v54_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 58.9 3.5 26 259-284 3-28 (204)
281 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.011 3.8E-07 57.8 9.9 27 258-284 43-69 (322)
282 2q6t_A DNAB replication FORK h 96.4 0.0043 1.5E-07 63.6 7.2 156 249-425 189-358 (444)
283 3co5_A Putative two-component 96.4 0.0057 1.9E-07 52.2 6.9 39 388-427 76-115 (143)
284 1vht_A Dephospho-COA kinase; s 96.4 0.0015 5.1E-08 59.8 3.2 24 259-282 3-26 (218)
285 3auy_A DNA double-strand break 96.4 0.0023 8E-08 63.9 4.8 31 250-281 16-46 (371)
286 3iij_A Coilin-interacting nucl 96.3 0.0017 5.7E-08 57.6 2.9 27 258-284 9-35 (180)
287 3cmw_A Protein RECA, recombina 96.3 0.014 4.6E-07 68.8 11.1 39 257-295 729-768 (1706)
288 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0046 1.6E-07 60.4 6.1 28 255-282 118-145 (331)
289 3zvl_A Bifunctional polynucleo 96.3 0.016 5.5E-07 58.8 10.5 28 257-284 255-282 (416)
290 2c95_A Adenylate kinase 1; tra 96.3 0.0019 6.6E-08 57.7 3.1 27 258-284 7-33 (196)
291 2wwf_A Thymidilate kinase, put 96.3 0.0021 7.1E-08 58.3 3.3 26 258-283 8-33 (212)
292 2b8t_A Thymidine kinase; deoxy 96.3 0.0038 1.3E-07 57.9 5.1 51 387-441 89-150 (223)
293 3cbq_A GTP-binding protein REM 96.3 0.0026 8.9E-08 57.2 3.9 22 262-283 25-46 (195)
294 2ze6_A Isopentenyl transferase 96.3 0.0018 6.1E-08 61.2 2.8 23 262-284 3-25 (253)
295 2plr_A DTMP kinase, probable t 96.2 0.0023 7.8E-08 57.9 3.4 28 259-286 3-30 (213)
296 1nn5_A Similar to deoxythymidy 96.2 0.0023 7.7E-08 58.1 3.3 28 257-284 6-33 (215)
297 1jr3_A DNA polymerase III subu 96.2 0.009 3.1E-07 59.0 7.8 43 387-430 119-161 (373)
298 1via_A Shikimate kinase; struc 96.2 0.002 6.8E-08 56.8 2.5 23 262-284 6-28 (175)
299 1ly1_A Polynucleotide kinase; 96.2 0.0025 8.6E-08 56.0 3.1 22 261-282 3-24 (181)
300 3bgw_A DNAB-like replicative h 96.1 0.0054 1.9E-07 62.9 5.9 34 249-282 186-219 (444)
301 1tev_A UMP-CMP kinase; ploop, 96.1 0.0028 9.6E-08 56.4 3.2 26 259-284 2-27 (196)
302 1lw7_A Transcriptional regulat 96.1 0.00019 6.4E-09 71.8 -5.1 72 369-440 258-341 (365)
303 2vli_A Antibiotic resistance p 96.1 0.0022 7.5E-08 56.7 2.4 27 258-284 3-29 (183)
304 2erx_A GTP-binding protein DI- 96.1 0.0051 1.7E-07 53.0 4.7 21 262-282 5-25 (172)
305 3q72_A GTP-binding protein RAD 96.1 0.0031 1.1E-07 54.3 3.2 24 262-285 4-27 (166)
306 2bwj_A Adenylate kinase 5; pho 96.1 0.0024 8.1E-08 57.2 2.4 28 257-284 9-36 (199)
307 3k53_A Ferrous iron transport 96.0 0.0028 9.6E-08 60.3 3.0 24 262-285 5-28 (271)
308 1xjc_A MOBB protein homolog; s 96.0 0.0019 6.3E-08 57.3 1.5 35 261-295 5-42 (169)
309 1nks_A Adenylate kinase; therm 96.0 0.0032 1.1E-07 55.9 3.0 24 262-285 3-26 (194)
310 1z2a_A RAS-related protein RAB 95.9 0.0033 1.1E-07 54.1 2.8 22 262-283 7-28 (168)
311 2nzj_A GTP-binding protein REM 95.9 0.0039 1.3E-07 54.1 3.3 23 262-284 6-28 (175)
312 1aky_A Adenylate kinase; ATP:A 95.9 0.0042 1.4E-07 56.9 3.5 27 258-284 2-28 (220)
313 3iby_A Ferrous iron transport 95.9 0.0046 1.6E-07 58.5 3.8 23 262-284 3-25 (256)
314 2ged_A SR-beta, signal recogni 95.9 0.0035 1.2E-07 55.6 2.9 26 260-285 48-73 (193)
315 3pfi_A Holliday junction ATP-d 95.9 0.034 1.2E-06 54.2 10.2 24 261-284 56-79 (338)
316 3lxw_A GTPase IMAP family memb 95.9 0.0038 1.3E-07 58.6 3.2 24 261-284 22-45 (247)
317 3u61_B DNA polymerase accessor 95.9 0.011 3.7E-07 57.4 6.5 43 387-430 105-148 (324)
318 2qby_B CDC6 homolog 3, cell di 95.9 0.0018 6.1E-08 64.4 0.8 25 260-284 45-69 (384)
319 3q85_A GTP-binding protein REM 95.9 0.0042 1.4E-07 53.6 3.2 23 262-284 4-26 (169)
320 1kao_A RAP2A; GTP-binding prot 95.9 0.0038 1.3E-07 53.4 2.9 21 262-282 5-25 (167)
321 2ce2_X GTPase HRAS; signaling 95.9 0.0036 1.2E-07 53.4 2.7 22 262-283 5-26 (166)
322 3tw8_B RAS-related protein RAB 95.9 0.0045 1.5E-07 53.9 3.3 22 262-283 11-32 (181)
323 3ake_A Cytidylate kinase; CMP 95.9 0.0037 1.3E-07 56.4 2.8 23 262-284 4-26 (208)
324 2qp9_X Vacuolar protein sortin 95.9 0.023 8E-07 56.2 8.9 27 258-284 82-108 (355)
325 2dyk_A GTP-binding protein; GT 95.8 0.0039 1.3E-07 53.2 2.9 23 262-284 3-25 (161)
326 2z0h_A DTMP kinase, thymidylat 95.8 0.0042 1.4E-07 55.5 3.1 23 262-284 2-24 (197)
327 3fb4_A Adenylate kinase; psych 95.8 0.0041 1.4E-07 56.7 3.1 23 262-284 2-24 (216)
328 1zd8_A GTP:AMP phosphotransfer 95.8 0.0044 1.5E-07 57.2 3.2 27 258-284 5-31 (227)
329 2lkc_A Translation initiation 95.8 0.0052 1.8E-07 53.5 3.6 26 258-283 6-31 (178)
330 1u8z_A RAS-related protein RAL 95.8 0.0041 1.4E-07 53.3 2.8 22 262-283 6-27 (168)
331 2cdn_A Adenylate kinase; phosp 95.8 0.0051 1.7E-07 55.5 3.5 25 260-284 20-44 (201)
332 2dby_A GTP-binding protein; GD 95.8 0.0033 1.1E-07 62.8 2.4 22 262-283 3-24 (368)
333 1z0j_A RAB-22, RAS-related pro 95.8 0.0043 1.5E-07 53.4 2.9 23 262-284 8-30 (170)
334 1g16_A RAS-related protein SEC 95.8 0.0041 1.4E-07 53.6 2.7 22 262-283 5-26 (170)
335 1z08_A RAS-related protein RAB 95.8 0.0044 1.5E-07 53.5 2.8 22 262-283 8-29 (170)
336 1c1y_A RAS-related protein RAP 95.8 0.0044 1.5E-07 53.2 2.8 21 262-282 5-25 (167)
337 3t5d_A Septin-7; GTP-binding p 95.8 0.0046 1.6E-07 58.9 3.2 23 262-284 10-32 (274)
338 1zuh_A Shikimate kinase; alpha 95.8 0.005 1.7E-07 53.7 3.2 23 261-283 8-30 (168)
339 1ek0_A Protein (GTP-binding pr 95.8 0.0044 1.5E-07 53.3 2.8 22 262-283 5-26 (170)
340 1svi_A GTP-binding protein YSX 95.8 0.0044 1.5E-07 55.1 2.8 24 260-283 23-46 (195)
341 1ky3_A GTP-binding protein YPT 95.7 0.0046 1.6E-07 53.9 2.9 22 262-283 10-31 (182)
342 1a7j_A Phosphoribulokinase; tr 95.7 0.0028 9.6E-08 61.2 1.5 26 259-284 4-29 (290)
343 3b1v_A Ferrous iron uptake tra 95.7 0.0049 1.7E-07 58.9 3.3 24 261-284 4-27 (272)
344 2pt5_A Shikimate kinase, SK; a 95.7 0.0051 1.8E-07 53.5 3.1 23 262-284 2-24 (168)
345 2ew1_A RAS-related protein RAB 95.7 0.0089 3E-07 54.0 4.8 21 262-282 28-48 (201)
346 3pqc_A Probable GTP-binding pr 95.7 0.0046 1.6E-07 54.7 2.8 24 261-284 24-47 (195)
347 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0047 1.6E-07 53.8 2.9 22 262-283 9-30 (177)
348 3pxi_A Negative regulator of g 95.7 0.016 5.6E-07 63.3 7.8 23 262-284 523-545 (758)
349 3dl0_A Adenylate kinase; phosp 95.7 0.005 1.7E-07 56.2 3.1 23 262-284 2-24 (216)
350 2fn4_A P23, RAS-related protei 95.7 0.0046 1.6E-07 53.9 2.7 22 262-283 11-32 (181)
351 2iyv_A Shikimate kinase, SK; t 95.7 0.0042 1.4E-07 55.0 2.5 24 261-284 3-26 (184)
352 3t1o_A Gliding protein MGLA; G 95.7 0.005 1.7E-07 54.5 3.0 25 262-286 16-40 (198)
353 1e6c_A Shikimate kinase; phosp 95.7 0.0045 1.5E-07 54.1 2.6 24 261-284 3-26 (173)
354 1ukz_A Uridylate kinase; trans 95.7 0.0052 1.8E-07 55.4 3.1 25 260-284 15-39 (203)
355 2grj_A Dephospho-COA kinase; T 95.7 0.0054 1.8E-07 55.4 3.1 23 261-283 13-35 (192)
356 1qf9_A UMP/CMP kinase, protein 95.6 0.0055 1.9E-07 54.3 3.1 25 260-284 6-30 (194)
357 1zak_A Adenylate kinase; ATP:A 95.6 0.0047 1.6E-07 56.7 2.7 26 259-284 4-29 (222)
358 2cxx_A Probable GTP-binding pr 95.6 0.0052 1.8E-07 54.2 2.9 23 262-284 3-25 (190)
359 2pbr_A DTMP kinase, thymidylat 95.6 0.0055 1.9E-07 54.4 3.1 23 262-284 2-24 (195)
360 1r2q_A RAS-related protein RAB 95.6 0.0052 1.8E-07 52.8 2.8 21 262-282 8-28 (170)
361 1moz_A ARL1, ADP-ribosylation 95.6 0.0046 1.6E-07 54.2 2.4 24 259-282 17-40 (183)
362 4dsu_A GTPase KRAS, isoform 2B 95.6 0.0055 1.9E-07 53.8 2.9 22 262-283 6-27 (189)
363 3clv_A RAB5 protein, putative; 95.6 0.0055 1.9E-07 54.3 2.9 22 262-283 9-30 (208)
364 2hxs_A RAB-26, RAS-related pro 95.6 0.0065 2.2E-07 52.9 3.2 22 262-283 8-29 (178)
365 2oil_A CATX-8, RAS-related pro 95.6 0.0056 1.9E-07 54.4 2.8 22 262-283 27-48 (193)
366 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0093 3.2E-07 52.6 4.2 22 262-283 9-30 (184)
367 3bc1_A RAS-related protein RAB 95.5 0.0058 2E-07 53.8 2.8 21 262-282 13-33 (195)
368 1r8s_A ADP-ribosylation factor 95.5 0.006 2E-07 52.3 2.8 21 262-282 2-22 (164)
369 3tlx_A Adenylate kinase 2; str 95.5 0.0066 2.2E-07 56.8 3.3 26 259-284 28-53 (243)
370 1sxj_B Activator 1 37 kDa subu 95.5 0.016 5.5E-07 55.7 6.2 43 387-430 107-149 (323)
371 1uj2_A Uridine-cytidine kinase 95.5 0.0062 2.1E-07 57.2 3.1 24 261-284 23-46 (252)
372 1upt_A ARL1, ADP-ribosylation 95.5 0.0061 2.1E-07 52.6 2.8 23 260-282 7-29 (171)
373 2y8e_A RAB-protein 6, GH09086P 95.5 0.0059 2E-07 53.0 2.7 21 262-282 16-36 (179)
374 3a8t_A Adenylate isopentenyltr 95.5 0.008 2.7E-07 59.1 3.8 27 259-285 39-65 (339)
375 2g6b_A RAS-related protein RAB 95.5 0.0065 2.2E-07 53.0 2.8 22 262-283 12-33 (180)
376 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0075 2.6E-07 57.0 3.4 25 259-283 3-27 (260)
377 1z0f_A RAB14, member RAS oncog 95.4 0.0067 2.3E-07 52.7 2.8 22 262-283 17-38 (179)
378 3t5g_A GTP-binding protein RHE 95.4 0.012 4.2E-07 51.4 4.5 20 262-281 8-27 (181)
379 3con_A GTPase NRAS; structural 95.4 0.0068 2.3E-07 53.6 2.8 22 262-283 23-44 (190)
380 2efe_B Small GTP-binding prote 95.4 0.007 2.4E-07 52.8 2.8 22 262-283 14-35 (181)
381 2a9k_A RAS-related protein RAL 95.4 0.007 2.4E-07 53.0 2.8 22 262-283 20-41 (187)
382 1ksh_A ARF-like protein 2; sma 95.4 0.0086 2.9E-07 52.7 3.3 26 258-283 16-41 (186)
383 1wf3_A GTP-binding protein; GT 95.4 0.0077 2.6E-07 58.4 3.2 22 262-283 9-30 (301)
384 2xtp_A GTPase IMAP family memb 95.4 0.0076 2.6E-07 56.7 3.1 23 261-283 23-45 (260)
385 2bme_A RAB4A, RAS-related prot 95.3 0.0071 2.4E-07 53.1 2.7 22 262-283 12-33 (186)
386 2qmh_A HPR kinase/phosphorylas 95.3 0.012 4.2E-07 53.3 4.2 35 249-284 24-58 (205)
387 2il1_A RAB12; G-protein, GDP, 95.3 0.009 3.1E-07 53.2 3.3 22 262-283 28-49 (192)
388 2f6r_A COA synthase, bifunctio 95.3 0.008 2.7E-07 57.6 3.0 23 260-282 75-97 (281)
389 2gf9_A RAS-related protein RAB 95.3 0.0079 2.7E-07 53.2 2.8 22 262-283 24-45 (189)
390 2fg5_A RAB-22B, RAS-related pr 95.3 0.0078 2.7E-07 53.5 2.7 22 262-283 25-46 (192)
391 1vg8_A RAS-related protein RAB 95.3 0.0081 2.8E-07 53.8 2.9 22 262-283 10-31 (207)
392 4b4t_J 26S protease regulatory 95.3 0.038 1.3E-06 55.6 8.0 29 257-285 179-207 (405)
393 2h57_A ADP-ribosylation factor 95.3 0.0083 2.8E-07 53.2 2.9 24 261-284 22-45 (190)
394 3kkq_A RAS-related protein M-R 95.3 0.0082 2.8E-07 52.6 2.8 21 262-282 20-40 (183)
395 2qu8_A Putative nucleolar GTP- 95.3 0.0094 3.2E-07 54.8 3.3 23 261-283 30-52 (228)
396 2bov_A RAla, RAS-related prote 95.3 0.0082 2.8E-07 53.7 2.8 22 262-283 16-37 (206)
397 2gf0_A GTP-binding protein DI- 95.2 0.0081 2.8E-07 53.4 2.7 22 261-282 9-30 (199)
398 3hu3_A Transitional endoplasmi 95.2 0.058 2E-06 55.8 9.6 28 257-284 235-262 (489)
399 1zbd_A Rabphilin-3A; G protein 95.2 0.0095 3.3E-07 53.3 3.2 22 262-283 10-31 (203)
400 1nrj_B SR-beta, signal recogni 95.2 0.0084 2.9E-07 54.4 2.8 24 261-284 13-36 (218)
401 2cjw_A GTP-binding protein GEM 95.2 0.0085 2.9E-07 53.6 2.8 21 262-282 8-28 (192)
402 4dhe_A Probable GTP-binding pr 95.2 0.0051 1.7E-07 56.0 1.3 25 260-284 29-53 (223)
403 1z06_A RAS-related protein RAB 95.2 0.0089 3E-07 52.9 2.9 21 262-282 22-42 (189)
404 4bas_A ADP-ribosylation factor 95.2 0.01 3.6E-07 52.6 3.3 23 261-283 18-40 (199)
405 3llu_A RAS-related GTP-binding 95.2 0.01 3.5E-07 53.0 3.2 26 261-286 21-46 (196)
406 3oes_A GTPase rhebl1; small GT 95.2 0.0085 2.9E-07 53.7 2.7 24 261-284 25-48 (201)
407 3i8s_A Ferrous iron transport 95.2 0.0093 3.2E-07 56.9 3.1 23 262-284 5-27 (274)
408 3cmu_A Protein RECA, recombina 95.2 0.065 2.2E-06 63.9 10.7 28 257-284 380-407 (2050)
409 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.0092 3.1E-07 52.2 2.8 21 262-282 7-27 (186)
410 3iev_A GTP-binding protein ERA 95.2 0.0096 3.3E-07 57.8 3.2 23 261-283 11-33 (308)
411 3be4_A Adenylate kinase; malar 95.2 0.0097 3.3E-07 54.4 3.1 26 259-284 4-29 (217)
412 1gwn_A RHO-related GTP-binding 95.2 0.015 5E-07 52.7 4.2 22 262-283 30-51 (205)
413 2o52_A RAS-related protein RAB 95.1 0.01 3.4E-07 53.3 3.1 22 262-283 27-48 (200)
414 3dz8_A RAS-related protein RAB 95.1 0.0089 3.1E-07 53.0 2.7 23 262-284 25-47 (191)
415 3tkl_A RAS-related protein RAB 95.1 0.012 4.2E-07 52.0 3.6 23 262-284 18-40 (196)
416 3a1s_A Iron(II) transport prot 95.1 0.011 3.6E-07 56.0 3.2 23 262-284 7-29 (258)
417 1zj6_A ADP-ribosylation factor 95.1 0.011 3.6E-07 52.3 3.1 23 260-282 16-38 (187)
418 2a5j_A RAS-related protein RAB 95.1 0.0097 3.3E-07 52.8 2.8 22 262-283 23-44 (191)
419 1e4v_A Adenylate kinase; trans 95.1 0.01 3.4E-07 54.1 3.0 23 262-284 2-24 (214)
420 3cnl_A YLQF, putative uncharac 95.1 0.012 4E-07 56.0 3.4 30 261-290 100-129 (262)
421 2h17_A ADP-ribosylation factor 95.1 0.0095 3.2E-07 52.4 2.6 22 262-283 23-44 (181)
422 1ypw_A Transitional endoplasmi 95.0 0.00095 3.2E-08 73.7 -4.9 45 253-299 504-548 (806)
423 2xb4_A Adenylate kinase; ATP-b 95.0 0.011 3.9E-07 54.3 3.1 23 262-284 2-24 (223)
424 3exa_A TRNA delta(2)-isopenten 95.0 0.012 4.2E-07 57.1 3.4 25 260-284 3-27 (322)
425 2bcg_Y Protein YP2, GTP-bindin 95.0 0.01 3.5E-07 53.3 2.7 22 262-283 10-31 (206)
426 1zd9_A ADP-ribosylation factor 95.0 0.011 3.7E-07 52.4 2.8 21 262-282 24-44 (188)
427 2atv_A RERG, RAS-like estrogen 95.0 0.011 3.7E-07 52.7 2.9 23 261-283 29-51 (196)
428 3euj_A Chromosome partition pr 95.0 0.044 1.5E-06 56.5 7.7 77 361-441 371-464 (483)
429 2fv8_A H6, RHO-related GTP-bin 95.0 0.01 3.6E-07 53.5 2.7 23 261-283 26-48 (207)
430 1jbk_A CLPB protein; beta barr 95.0 0.013 4.5E-07 51.2 3.4 27 258-284 41-67 (195)
431 3reg_A RHO-like small GTPase; 95.0 0.011 3.7E-07 52.6 2.8 22 262-283 25-46 (194)
432 1x3s_A RAS-related protein RAB 95.0 0.011 3.8E-07 52.2 2.8 22 262-283 17-38 (195)
433 2p5s_A RAS and EF-hand domain 95.0 0.011 3.7E-07 52.9 2.8 24 260-283 28-51 (199)
434 3bwd_D RAC-like GTP-binding pr 95.0 0.013 4.3E-07 51.2 3.2 24 260-283 8-31 (182)
435 1jwy_B Dynamin A GTPase domain 95.0 0.011 3.8E-07 57.1 3.0 23 262-284 26-48 (315)
436 3cph_A RAS-related protein SEC 95.0 0.011 3.8E-07 53.2 2.8 23 261-283 21-43 (213)
437 2j1l_A RHO-related GTP-binding 95.0 0.012 4.2E-07 53.4 3.1 21 262-282 36-56 (214)
438 2b6h_A ADP-ribosylation factor 95.0 0.013 4.4E-07 52.3 3.2 24 259-282 28-51 (192)
439 2f7s_A C25KG, RAS-related prot 95.0 0.013 4.4E-07 53.1 3.2 23 262-284 27-49 (217)
440 3d3q_A TRNA delta(2)-isopenten 94.9 0.012 4E-07 58.0 3.1 25 261-285 8-32 (340)
441 3def_A T7I23.11 protein; chlor 94.9 0.012 4.1E-07 55.6 3.1 23 262-284 38-60 (262)
442 2q3h_A RAS homolog gene family 94.9 0.013 4.6E-07 52.2 3.2 24 260-283 20-43 (201)
443 1h65_A Chloroplast outer envel 94.9 0.012 4.1E-07 55.8 3.1 23 262-284 41-63 (270)
444 2iwr_A Centaurin gamma 1; ANK 94.9 0.0089 3E-07 52.1 1.9 22 261-282 8-29 (178)
445 1qvr_A CLPB protein; coiled co 94.9 0.029 9.9E-07 62.3 6.5 26 261-286 589-614 (854)
446 3c5c_A RAS-like protein 12; GD 94.9 0.012 4.2E-07 52.1 2.9 21 262-282 23-43 (187)
447 2wsm_A Hydrogenase expression/ 94.9 0.012 4E-07 53.6 2.7 24 261-284 31-54 (221)
448 2h92_A Cytidylate kinase; ross 94.9 0.0093 3.2E-07 54.4 2.1 25 260-284 3-27 (219)
449 2fu5_C RAS-related protein RAB 94.9 0.0089 3.1E-07 52.4 1.9 22 262-283 10-31 (183)
450 1ak2_A Adenylate kinase isoenz 94.9 0.015 5.2E-07 53.8 3.5 26 259-284 15-40 (233)
451 2aka_B Dynamin-1; fusion prote 94.9 0.012 4E-07 56.3 2.8 23 262-284 28-50 (299)
452 2gco_A H9, RHO-related GTP-bin 94.8 0.013 4.4E-07 52.6 2.7 22 262-283 27-48 (201)
453 3v9p_A DTMP kinase, thymidylat 94.8 0.012 4.2E-07 54.5 2.6 28 258-285 23-50 (227)
454 4edh_A DTMP kinase, thymidylat 94.8 0.016 5.4E-07 53.2 3.3 29 258-286 4-32 (213)
455 2g3y_A GTP-binding protein GEM 94.8 0.016 5.4E-07 53.0 3.3 23 261-283 38-60 (211)
456 3cmw_A Protein RECA, recombina 94.7 0.084 2.9E-06 62.2 9.9 33 249-282 370-405 (1706)
457 2fh5_B SR-beta, signal recogni 94.7 0.018 6.2E-07 52.0 3.6 23 261-283 8-30 (214)
458 2x77_A ADP-ribosylation factor 94.7 0.012 4.2E-07 51.9 2.4 24 259-282 21-44 (189)
459 1sky_E F1-ATPase, F1-ATP synth 94.7 0.006 2.1E-07 62.6 0.3 42 249-291 141-182 (473)
460 3tmk_A Thymidylate kinase; pho 94.7 0.016 5.5E-07 53.4 3.1 29 258-286 3-31 (216)
461 4djt_A GTP-binding nuclear pro 94.7 0.0085 2.9E-07 54.3 1.2 22 262-283 13-34 (218)
462 2atx_A Small GTP binding prote 94.6 0.015 5.1E-07 51.6 2.7 22 262-283 20-41 (194)
463 3lv8_A DTMP kinase, thymidylat 94.6 0.018 6E-07 53.9 3.3 27 259-285 26-52 (236)
464 2r8r_A Sensor protein; KDPD, P 94.6 0.016 5.4E-07 53.7 2.9 43 384-426 81-125 (228)
465 1a5t_A Delta prime, HOLB; zinc 94.6 0.077 2.6E-06 51.9 8.1 42 387-429 108-149 (334)
466 1ltq_A Polynucleotide kinase; 94.6 0.017 5.8E-07 55.4 3.1 22 261-282 3-24 (301)
467 1q57_A DNA primase/helicase; d 94.6 0.23 7.9E-06 51.4 12.0 33 250-282 232-264 (503)
468 3r7w_A Gtpase1, GTP-binding pr 94.5 0.019 6.6E-07 55.6 3.5 26 259-284 2-27 (307)
469 3umf_A Adenylate kinase; rossm 94.5 0.015 5.2E-07 53.6 2.6 29 256-284 25-53 (217)
470 4tmk_A Protein (thymidylate ki 94.5 0.02 6.8E-07 52.6 3.3 27 259-285 2-28 (213)
471 3tqf_A HPR(Ser) kinase; transf 94.5 0.028 9.7E-07 49.8 4.1 33 249-282 6-38 (181)
472 2ocp_A DGK, deoxyguanosine kin 94.5 0.019 6.6E-07 53.3 3.2 27 259-285 1-27 (241)
473 1p5z_B DCK, deoxycytidine kina 94.5 0.014 4.7E-07 55.1 2.2 28 258-285 22-49 (263)
474 3crm_A TRNA delta(2)-isopenten 94.5 0.018 6.2E-07 56.3 3.1 25 261-285 6-30 (323)
475 3ld9_A DTMP kinase, thymidylat 94.5 0.02 7E-07 52.9 3.3 28 258-285 19-46 (223)
476 2hf9_A Probable hydrogenase ni 94.4 0.017 5.8E-07 52.7 2.7 24 261-284 39-62 (226)
477 3foz_A TRNA delta(2)-isopenten 94.4 0.021 7.1E-07 55.5 3.3 26 260-285 10-35 (316)
478 2p65_A Hypothetical protein PF 94.4 0.017 5.7E-07 50.5 2.4 29 258-286 41-69 (187)
479 2hup_A RAS-related protein RAB 94.4 0.018 6.2E-07 51.7 2.7 22 262-283 31-52 (201)
480 2yc2_C IFT27, small RAB-relate 94.3 0.0098 3.3E-07 53.2 0.8 22 262-283 22-43 (208)
481 4gzl_A RAS-related C3 botulinu 94.3 0.019 6.6E-07 51.6 2.6 23 260-282 30-52 (204)
482 3cpj_B GTP-binding protein YPT 94.3 0.021 7.1E-07 52.1 2.9 22 262-283 15-36 (223)
483 2r62_A Cell division protease 94.2 0.0072 2.5E-07 57.0 -0.4 32 250-283 36-67 (268)
484 2zts_A Putative uncharacterize 94.2 0.03 1E-06 51.6 3.9 24 257-280 27-50 (251)
485 3q3j_B RHO-related GTP-binding 94.2 0.022 7.5E-07 51.8 2.8 23 261-283 28-50 (214)
486 1puj_A YLQF, conserved hypothe 94.1 0.03 1E-06 53.6 3.8 30 260-289 120-149 (282)
487 3cmu_A Protein RECA, recombina 94.1 0.13 4.4E-06 61.4 9.7 35 247-281 1066-1102(2050)
488 3eph_A TRNA isopentenyltransfe 94.1 0.025 8.6E-07 56.9 3.2 26 260-285 2-27 (409)
489 2v3c_C SRP54, signal recogniti 94.0 0.0069 2.4E-07 61.8 -1.0 35 261-295 100-134 (432)
490 2j0v_A RAC-like GTP-binding pr 94.0 0.024 8.2E-07 51.0 2.7 22 261-282 10-31 (212)
491 3ec1_A YQEH GTPase; atnos1, at 93.7 0.027 9.2E-07 56.2 2.6 25 259-283 161-185 (369)
492 3l0i_B RAS-related protein RAB 93.7 0.01 3.5E-07 53.1 -0.5 23 262-284 35-57 (199)
493 2hjg_A GTP-binding protein ENG 93.5 0.033 1.1E-06 56.7 3.0 22 262-283 5-26 (436)
494 3gj0_A GTP-binding nuclear pro 93.5 0.022 7.5E-07 51.8 1.5 39 377-415 166-209 (221)
495 2x2e_A Dynamin-1; nitration, h 93.5 0.028 9.5E-07 55.6 2.2 23 262-284 33-55 (353)
496 3h2y_A GTPase family protein; 93.4 0.028 9.5E-07 56.1 2.2 26 259-284 159-184 (368)
497 1wxq_A GTP-binding protein; st 93.4 0.037 1.3E-06 55.8 3.1 23 262-284 2-24 (397)
498 3th5_A RAS-related C3 botulinu 92.5 0.014 5E-07 52.2 0.0 22 261-282 31-52 (204)
499 3sr0_A Adenylate kinase; phosp 93.3 0.042 1.4E-06 50.1 3.1 24 262-285 2-25 (206)
500 1mky_A Probable GTP-binding pr 93.3 0.073 2.5E-06 54.2 5.2 36 262-297 3-50 (439)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.5e-82 Score=729.77 Aligned_cols=449 Identities=20% Similarity=0.273 Sum_probs=388.8
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
+||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++.++++..++..++.+..++..
T Consensus 185 ~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~ 264 (1321)
T 4f4c_A 185 SWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFA 264 (1321)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999888888999999999999999999999998887777777666666777766777
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (461)
+...+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.............++..+..+++.++. .
T Consensus 265 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (1321)
T 4f4c_A 265 IRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGW 344 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778889999999999999999999999999998888777666555444333333333333333333222221 2
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.+++.+...+..++..++..+..++.+.++++|+.++++.+++.+...+. .....+..+.|+|+||+
T Consensus 345 v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~~~nvs 422 (1321)
T 4f4c_A 345 VHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKA--GRKDMKIKGDITVENVH 422 (1321)
T ss_dssp HTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSC--CCCCCCCCCCEEEEEEE
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--cccCCCCCCcEEEEEee
Confidence 2358899999988888888888899999999999999999999999999876543221111 11122346789999999
Q ss_pred EEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 240 VRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 240 ~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
|+|+.. +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|+
T Consensus 423 F~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~ 502 (1321)
T 4f4c_A 423 FTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA 502 (1321)
T ss_dssp ECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcce
Confidence 999753 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 319 lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
+|++||+|||.++. +++++++++||+.++++++++.+|+|++|.+||+|.+|||||||||+||||++++|+||||||||
T Consensus 503 Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t 582 (1321)
T 4f4c_A 503 LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582 (1321)
T ss_dssp CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence 99999999999875 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|+||+++|+.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|+|.|-
T Consensus 583 SaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 583 SALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHR 637 (1321)
T ss_dssp TTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHH
Confidence 9999999999999999988999999999999999999999999999999999964
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.4e-83 Score=737.66 Aligned_cols=449 Identities=21% Similarity=0.296 Sum_probs=365.7
Q ss_pred CCcccc--CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDS--TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAR 78 (461)
Q Consensus 1 ~~~f~~--~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 78 (461)
+.||+. +++|++++|+++|++.++..++..+..++..++.+++.++++++++|.+++++++++++.++...++.+...
T Consensus 842 ~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~ 921 (1321)
T 4f4c_A 842 IGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFT 921 (1321)
T ss_dssp SSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred chhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478986 689999999999999999999999999999999999999999999999998877777766655555444333
Q ss_pred HHHHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (461)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (461)
.......+..++....+.|+++|+++||+|+.|+++.++|.+..+...+...+......+...+...+..+...++.++.
T Consensus 922 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 1001 (1321)
T 4f4c_A 922 GKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMG 1001 (1321)
T ss_dssp SCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344556677888999999999999999999999999988877766554443333332222222222222222222
Q ss_pred HH--hCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEE
Q 012523 159 VL--LPGKHL--PGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIE 234 (461)
Q Consensus 159 ~~--~~g~~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 234 (461)
.. ..+..+ .+.+...+.+......++..+...+..++....+.+|+.++++.+++.+. ...+...++..|.|+
T Consensus 1002 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~ 1078 (1321)
T 4f4c_A 1002 LALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVI 1078 (1321)
T ss_dssp HHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEE
T ss_pred HHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEE
Confidence 21 123333 33222222222222344455666677888999999999999987655322 122233456678999
Q ss_pred EEeEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEE
Q 012523 235 LEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (461)
Q Consensus 235 ~~~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 313 (461)
|+||+|+|+++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|
T Consensus 1079 f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp EEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred EEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 99999999754 34699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccHHhhcCCC---CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 314 PQEPTLFRGSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 314 ~Q~~~lf~~ti~~Nl~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
||||+||+|||||||.++ .+++|+++++|++.+++++++..+|+||||.+||+|.+|||||||||||||||+++|+|
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE
Confidence 999999999999999875 35789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
||||||||+||++||+.|++.|++..++||+|+||||++++++||||+|||+|+|+|+|.|-
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999998999999999999999999999999999999999864
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.7e-79 Score=657.05 Aligned_cols=448 Identities=24% Similarity=0.328 Sum_probs=380.3
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++.++++..++..++.+..++..
T Consensus 112 ~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 191 (587)
T 3qf4_A 112 SNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF 191 (587)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999888888888888888888888999999988777666666666666666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+...+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+.......+..+..++++++ ..
T Consensus 192 ~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~ 271 (587)
T 3qf4_A 192 RKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVL 271 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777889999999999999999999999999999888777666554443333333333333333322222222 12
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.++.|.+.+++.|...+..++..++..+..++++..+.+|+.++++.+++.+. ...+...++..+.|+++||+
T Consensus 272 v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~ 348 (587)
T 3qf4_A 272 VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE---ADNALALPNVEGSVSFENVE 348 (587)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC---CTTCBCCSCCCCCEEEEEEE
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC---CCCccccCCCCCcEEEEEEE
Confidence 235889999998888888888888888888889999999999999999987554321 11111112245679999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|.+
T Consensus 349 ~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp ECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC
T ss_pred EEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC
Confidence 99976666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 320 f~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
|++|++||+.++. ..++++++++++.+++++++..+|+|++|.++++|.+||||||||++||||++++|++||||||||
T Consensus 429 f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts 508 (587)
T 3qf4_A 429 FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508 (587)
T ss_dssp CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCT
T ss_pred cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999998764 577889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
+||+++++.+++.+++..+++|+|+||||+++++.||||++|++|+|+++|.|-
T Consensus 509 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 509 SVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp TSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999988899999999999999999999999999999999864
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.6e-79 Score=658.27 Aligned_cols=449 Identities=22% Similarity=0.319 Sum_probs=382.1
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++.++++...+...+.+..++..
T Consensus 110 ~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 189 (578)
T 4a82_A 110 RFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLT 189 (578)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999888777777777888888888889999999998877666666666666666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 159 (461)
+...+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..............+..+..+++.++ ..
T Consensus 190 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~ 269 (578)
T 4a82_A 190 RERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYL 269 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778889999999999999999999999999999888777766655444433333333333333322222222 11
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.+++.|...+..++..+...+..++++..+.+|+.++++.+++.+.. ......++..+.|+++||+
T Consensus 270 v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~ 346 (578)
T 4a82_A 270 AISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVS 346 (578)
T ss_dssp HHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEE
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEE
Confidence 2347899999988888888888899999999999999999999999999876543211 1111112345689999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||+|.+
T Consensus 347 ~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 426 (578)
T 4a82_A 347 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426 (578)
T ss_dssp ECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCC
T ss_pred EEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCcc
Confidence 99976556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 320 f~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
|++|++||+.++. ..++++++++++.++++++++.+|+|++|.+|++|.+||||||||++||||++++|++||||||||
T Consensus 427 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts 506 (578)
T 4a82_A 427 FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 506 (578)
T ss_dssp CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999998754 467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
+||+++++.+.+.+++..+++|+|+||||+++++.||||++|++|+|+++|.|-.
T Consensus 507 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 507 ALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999998888999999999999999999999999999999998643
No 5
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.9e-78 Score=650.59 Aligned_cols=447 Identities=21% Similarity=0.296 Sum_probs=386.9
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
+.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++..++...+.+..++.
T Consensus 113 ~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 192 (582)
T 3b60_A 113 VAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSI 192 (582)
T ss_dssp STHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999988888888888888888889999999998887776666666666667766677
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (461)
.+...+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+..+++.++...
T Consensus 193 ~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (582)
T 3b60_A 193 SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASF 272 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778889999999999999999999999999999988888777766655555555555555444433333332221
Q ss_pred --hCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 161 --LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 161 --~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
..|.+++|.+.+++.+...+..++..+...+..++.+..+.+|+.++++.+++.+. ...+ .++..+.|+++||
T Consensus 273 ~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~i~~~~v 347 (582)
T 3b60_A 273 PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GKRV--IDRATGDLEFRNV 347 (582)
T ss_dssp SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CCBC--CSCCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CCCC--CCCCCCcEEEEEE
Confidence 23788999999999999999999999999999999999999999999987554321 1111 1123457999999
Q ss_pred EEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 239 ~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
+|+|+++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||+|.
T Consensus 348 ~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b60_A 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427 (582)
T ss_dssp EECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC
T ss_pred EEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc
Confidence 99997433469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 319 LFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 319 lf~~ti~~Nl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
+|++|++||+.++. +.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++||||||
T Consensus 428 l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEp 507 (582)
T 3b60_A 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_dssp CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETT
T ss_pred CCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 99999999998754 4678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|.+-
T Consensus 508 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp TSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999877799999999999999999999999999999999854
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.2e-78 Score=650.11 Aligned_cols=446 Identities=21% Similarity=0.340 Sum_probs=386.3
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++..++...+.+..++..
T Consensus 114 ~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 193 (582)
T 3b5x_A 114 RFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKIS 193 (582)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999998888888888888888888999999999998877777666666666666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (461)
+...+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++. .
T Consensus 194 ~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 273 (582)
T 3b5x_A 194 RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVD 273 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788899999999999999999999999999999888887777666555555555444444444333332221 2
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.+++.+...+..++..+...+..++++..+.+|+.++++.+++.+. ...+ .++..+.|+++||+
T Consensus 274 v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~i~~~~v~ 348 (582)
T 3b5x_A 274 SIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GKYE--AERVNGEVDVKDVT 348 (582)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CCCC--CCCCCCeEEEEEEE
Confidence 235889999999999999999999999999999999999999999999986554221 1111 11234579999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++++||||+|.+
T Consensus 349 ~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T 3b5x_A 349 FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428 (582)
T ss_pred EEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcc
Confidence 99975435699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 320 f~~ti~~Nl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
|++|++||+.++. +.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++|||||||
T Consensus 429 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt 508 (582)
T 3b5x_A 429 FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508 (582)
T ss_pred ccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 9999999998754 46788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 398 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|.+-
T Consensus 509 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999987799999999999999999999999999999999864
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-79 Score=660.36 Aligned_cols=447 Identities=27% Similarity=0.360 Sum_probs=385.5
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++.++++.+++..++.+..++..
T Consensus 126 ~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 205 (598)
T 3qf4_B 126 GFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYF 205 (598)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999888888888888899999999999999998877777777777677777777777
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (461)
+...+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+.......+..+..++++++. .
T Consensus 206 ~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 285 (598)
T 3qf4_B 206 YENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWL 285 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76777788899999999999999999999999999999888877766555444444444444444433333322222 1
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 239 (461)
...|.+++|.+.+++.+...+..++..+...+..++.+..+++|+.++++.+++.+. +. ....++..+.|+++||+
T Consensus 286 ~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~-~~~~~~~~~~i~~~~v~ 361 (598)
T 3qf4_B 286 ALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD---PD-AVELREVRGEIEFKNVW 361 (598)
T ss_dssp GGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC---SS-CCCCCSCCCCEEEEEEE
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CC-CCCCCCCCCeEEEEEEE
Confidence 234788999988888888888888888999999999999999999999987655321 11 11122345689999999
Q ss_pred EEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcc
Q 012523 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (461)
Q Consensus 240 ~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 319 (461)
|+|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||+|.+
T Consensus 362 ~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 440 (598)
T 3qf4_B 362 FSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440 (598)
T ss_dssp CCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCC
T ss_pred EECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcc
Confidence 999754 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 012523 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 320 f~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts 398 (461)
|++|++||+.++. ..++++++++++.++++++++.+|+|++|.+|++|.+||||||||++||||++++|++||||||||
T Consensus 441 f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts 520 (598)
T 3qf4_B 441 FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATS 520 (598)
T ss_dssp CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCT
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999999998764 467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|+|+++|.|-.
T Consensus 521 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 521 NVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999878999999999999999999999999999999998643
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-77 Score=646.17 Aligned_cols=448 Identities=26% Similarity=0.338 Sum_probs=380.7
Q ss_pred CccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (461)
Q Consensus 2 ~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++..++...+.+..++..
T Consensus 111 ~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 190 (595)
T 2yl4_A 111 AFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLT 190 (595)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999888888888888888888888999999999988776666666666666666666666
Q ss_pred HHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012523 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 159 (461)
+...+..+++.+.+.|.++|+++||+|+.|+++.++|.+..++..+...+......+.......+..+..+++.++. .
T Consensus 191 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 270 (595)
T 2yl4_A 191 KVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLL 270 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777889999999999999999999999999999888887766655544444444444443333332222221 2
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCccc-EEEEeE
Q 012523 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGR-IELEDL 238 (461)
Q Consensus 160 ~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~v 238 (461)
...|.+++|.+.+++.+...+..++..+...+..++++..+.+|+.++++.+++.+.. ....+ ..+..+. |+++||
T Consensus 271 v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~~~i~~~~v 347 (595)
T 2yl4_A 271 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--EGVIL-NEKSFQGALEFKNV 347 (595)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS--CSBCC-CTTTCCCCEEEEEE
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--CCCCC-CcCCCCCeEEEEEE
Confidence 2458899999999889988899999999999999999999999999999875542211 11111 1123457 999999
Q ss_pred EEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 239 ~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
+|+|++. +.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++++||||+|
T Consensus 348 ~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~ 427 (595)
T 2yl4_A 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427 (595)
T ss_dssp EEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSC
T ss_pred EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCC
Confidence 9999753 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCCC----CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 012523 318 TLFRGSVRTNLDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (461)
Q Consensus 318 ~lf~~ti~~Nl~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliL 393 (461)
.+|++|++||+.++.+ .++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++|||
T Consensus 428 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illl 507 (595)
T 2yl4_A 428 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLL 507 (595)
T ss_dssp CCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999987532 578889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 394 DEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 394 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
|||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|.+-
T Consensus 508 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 508 DEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHE 566 (595)
T ss_dssp ECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSC
T ss_pred ECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999977789999999999999999999999999999988753
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.1e-76 Score=676.97 Aligned_cols=450 Identities=22% Similarity=0.286 Sum_probs=378.0
Q ss_pred CCccccCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (461)
Q Consensus 1 ~~~f~~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
+.||+++++|++++|+++|++.++..++..+..++..++.+++.++++++++|+++++++++++++.++..++.+..++.
T Consensus 156 ~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~ 235 (1284)
T 3g5u_A 156 IGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF 235 (1284)
T ss_dssp THHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999888877777777777777777777
Q ss_pred HHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012523 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 158 (461)
.+...+..++..+.+.|+++|+++||+|+.|+++.++|.+..+...+...+.............++..+..+++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (1284)
T 3g5u_A 236 TDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTS 315 (1284)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788889999999999999999999999999999888877765544333333332223333322222222221
Q ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeE
Q 012523 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (461)
Q Consensus 159 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 238 (461)
....|.+++|.+.+++.+......++..+...+..++.+..+++|+.++++.+++.+...+... ...+..+.|+++||
T Consensus 316 lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v 393 (1284)
T 3g5u_A 316 LVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH--KPDNIQGNLEFKNI 393 (1284)
T ss_dssp HHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCC--CCTTCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCC--CCCCCCCeEEEEEE
Confidence 1223667777665555555555556777777788889999999999999987654321111111 11124578999999
Q ss_pred EEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC
Q 012523 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (461)
Q Consensus 239 ~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 317 (461)
+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|
T Consensus 394 ~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp EECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred EEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence 9999753 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 318 ~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
.+|++||+||+.++. +.++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|++||||||
T Consensus 474 ~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEp 553 (1284)
T 3g5u_A 474 VLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553 (1284)
T ss_dssp CCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999998754 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
||+||+++++.+++.++...+++|+|+||||+++++.||+|+||++|+|+++|.|-
T Consensus 554 ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 554 TSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp TCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999888899999999999999999999999999999999864
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.4e-71 Score=640.24 Aligned_cols=450 Identities=20% Similarity=0.284 Sum_probs=357.4
Q ss_pred CCccc--cCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 1 MLFFD--STPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAR 78 (461)
Q Consensus 1 ~~~f~--~~~~G~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 78 (461)
+.||+ ++++|++++|+++|++.++..++..+..++..++.+++.+++++.++|.++++++.++++.+++.....+..+
T Consensus 797 ~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~ 876 (1284)
T 3g5u_A 797 VSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLS 876 (1284)
T ss_dssp SHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788 4789999999999999999999999999998888888888999999999887766655555444333333333
Q ss_pred HHHHHhhhccccHHHHHHHHHchHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012523 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (461)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (461)
.......+..+.....+.|+++|+++||+|+.|+++.++|.+..+...+...+..............+..+...++.++.
T Consensus 877 ~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 956 (1284)
T 3g5u_A 877 GQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFG 956 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455566789999999999999999999999998887776655443333222222222222222222222221
Q ss_pred HH--hCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEE
Q 012523 159 VL--LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELE 236 (461)
Q Consensus 159 ~~--~~g~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 236 (461)
.. ..+.++.+.+..++.+......++..+......+..+..+.+|+.++++.+++.+...... ...++..+.|+++
T Consensus 957 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~ 1034 (1284)
T 3g5u_A 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQG--LKPNMLEGNVQFS 1034 (1284)
T ss_dssp HCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSC--CCTTTTSCCEEEE
T ss_pred HHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc--ccccCCCCcEEEE
Confidence 11 1255666655555444444444555555555566778899999999998765432111111 1122345789999
Q ss_pred eEEEEeCCC-CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEcc
Q 012523 237 DLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (461)
Q Consensus 237 ~v~~~y~~~-~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 315 (461)
||+|+|++. +.++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||
T Consensus 1035 ~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1035 GVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114 (1284)
T ss_dssp EEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEES
T ss_pred EEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECC
Confidence 999999753 2369999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 316 EPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 316 ~~~lf~~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
||.+|++||+||+.++. ..++++++++++.+++++++..+|+||||.+|++|.+||||||||++|||||+++|++||
T Consensus 1115 ~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1115 EPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp SCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred CCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999998753 357889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccchh
Q 012523 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
||||||+||+++++.+++.+++..+++|+|+||||+++++.||||+||++|+|++.|.|-
T Consensus 1195 LDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp EESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999888899999999999999999999999999999999864
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-64 Score=498.32 Aligned_cols=260 Identities=25% Similarity=0.418 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcC
Q 012523 189 RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGR 268 (461)
Q Consensus 189 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~ 268 (461)
.++..++.+.++++|++++++.+++.... .. .....+..+.|+++||+|+|+++ .++|+|+||+|++||++||+||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~-~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~ 88 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDL--PG-AGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGP 88 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCC--TT-CBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESS
T ss_pred ccchhHHHHHHHHHHHHHHHhCCcccccc--cc-ccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECC
Confidence 34556677888999999998754332111 01 11111235679999999999743 4599999999999999999999
Q ss_pred CCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHcc
Q 012523 269 TGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQ 347 (461)
Q Consensus 269 sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~ 347 (461)
||||||||+++|+|+|+|++|+|.+||.++.+++..++|++|+||||+|.+|++||+||+.++. ..++++++++++.++
T Consensus 89 sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~ 168 (306)
T 3nh6_A 89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168 (306)
T ss_dssp SCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999998764 467888999999999
Q ss_pred HHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccC
Q 012523 348 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHR 427 (461)
Q Consensus 348 l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 427 (461)
+.+++..+|+||+|.++++|.+||||||||++|||||+++|++||||||||+||+.+++.+++.|++..+++|+|+||||
T Consensus 169 l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~ 248 (306)
T 3nh6_A 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248 (306)
T ss_dssp CHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred cHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998788999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEccchh
Q 012523 428 VPTITDSDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 428 ~~~~~~~d~i~vl~~G~i~~~~~~~ 452 (461)
++++..||+|++|++|+|++.|.+-
T Consensus 249 l~~~~~aD~i~vl~~G~iv~~G~~~ 273 (306)
T 3nh6_A 249 LSTVVNADQILVIKDGCIVERGRHE 273 (306)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHH
T ss_pred hHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999864
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.4e-56 Score=430.42 Aligned_cols=222 Identities=32% Similarity=0.541 Sum_probs=206.4
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
...|+++||+|+|++++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+|++
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 34699999999994323469999999999999999999999999999999999999999999999999998888888999
Q ss_pred ceEEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
|+||||+|.+|+.|++||+.+.. ..+++++.++++.+++.++++.+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998753 34567788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 389 RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
++|||||||++||+.+++.+.+.|++..+++|+|++||+++.++.||+|++|++|++++.|..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 227 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKH 227 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999987668999999999999888999999999999998864
No 13
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.3e-56 Score=425.80 Aligned_cols=218 Identities=28% Similarity=0.551 Sum_probs=202.6
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++|
T Consensus 2 l~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 789999999953 3459999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EccCCccccccHHhhcCCC-C-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 313 IPQEPTLFRGSVRTNLDPL-G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~-~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
|||++.+|+.|++||+.+. . ..+++++.++++.+++.++++.+|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999875 2 3556778899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
|||||||++||+.+++.+.+.|++..+++|+|++||+++.++.||+|++|++|++++.|.+
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999887678999999999998888999999999999988874
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.5e-55 Score=421.61 Aligned_cols=220 Identities=32% Similarity=0.507 Sum_probs=203.7
Q ss_pred ccEEEEeEEEEeCCCC-CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 231 GRIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
+.|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.+.+...+|+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3599999999996432 3599999999999999999999999999999999999997 8999999999988888888999
Q ss_pred ceEEccCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
|+||||+|.+|+.|++||+.+.. ...++++.++++.+++.+++..+|+++++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999997643 34567788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 389 RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
++|||||||++||+.+++.+.+.|++..+++|+|+|||+++.++.||+|++|++|++++.|.+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~ 237 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTH 237 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999988778999999999999888999999999999998874
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.6e-54 Score=421.68 Aligned_cols=221 Identities=30% Similarity=0.455 Sum_probs=201.8
Q ss_pred ccEEEEeEEEEeCC-CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 231 GRIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 231 ~~i~~~~v~~~y~~-~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
+.|+++||+|+|++ ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964 22459999999999999999999999999999999999999999999999999988888888899
Q ss_pred ceEEccCCccccccHHhhcCCCC-CCCH-HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~-~~~~-~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|+||||++.+|+.|++||+.+.. ...+ +++.++++..++.++++.+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998643 2333 566777888889999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
|++||||||||+||+.+++.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|..
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999998643 7899999999999888999999999999998874
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-54 Score=440.83 Aligned_cols=224 Identities=36% Similarity=0.658 Sum_probs=210.3
Q ss_pred CCCcccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH
Q 012523 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 306 (461)
Q Consensus 227 ~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~ 306 (461)
|+..+.|+++||+|+|++++..+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++.++++..+
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 44556799999999996445569999999999999999999999999999999999998 89999999999999999999
Q ss_pred hhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 307 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 307 r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
|+.|+||||++.+|+.|++||+.+.....+++++++++.+++.+++++.|.++++.+++++.+||||||||++|||||++
T Consensus 93 rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred hCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998665667888999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
+|++||||||||+||+.++..+++.|++..+++|+|+|||+++.+..||||++|++|+|++.|..
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~ 237 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSI 237 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999987678999999999998888999999999999998863
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.5e-52 Score=398.27 Aligned_cols=208 Identities=23% Similarity=0.368 Sum_probs=188.2
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
+.|+++||+|+|++++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 35999999999964445699999999999999999999999999999999999999999999998 49
Q ss_pred eEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 012523 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (461)
Q Consensus 311 ~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i 390 (461)
+|+||+|.+|+.|++||+.+.....+.+..++++.+++.+.++.+|.+.++.+++.+.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999986543444556667788899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 391 LILDEATASIDSATDAILQRII-REEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 391 liLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
|||||||++||+.+++.+.+.+ ++..+++|+|++||+++.++.||++++|++|++++.|..
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 213 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECH
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999874 454457899999999999888999999999999988763
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.6e-52 Score=398.51 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++||+|+|++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999964344699999999999999999999999999999999999999999999998 399
Q ss_pred EEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
||||+|.+|..|++||+.+.....+++..++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999989999999865443444566777888888888889999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---HHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 392 ILDEATASIDSATDAILQRIIR---EEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
||||||++||+.+++.+.+.+. +..+++|+|++||+++.+..||++++|++|++++.|..
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 212 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSY 212 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999999999999984 33458999999999999888999999999999998873
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.2e-52 Score=395.43 Aligned_cols=208 Identities=22% Similarity=0.369 Sum_probs=175.2
Q ss_pred EEEEeEEEEeCCCC--CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH----
Q 012523 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL---- 306 (461)
Q Consensus 233 i~~~~v~~~y~~~~--~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~---- 306 (461)
|+++||+|+|++.. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 359999999999999999999999999999999999999999999999999999887654
Q ss_pred hhcceEEccCCccccc-cHHhhcCCC---C---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 307 RTKLSIIPQEPTLFRG-SVRTNLDPL---G---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 307 r~~i~~v~Q~~~lf~~-ti~~Nl~~~---~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
|+.||||||+|.+|+. |++||+.+. . ..+.+ ++.++++.+++.+. .......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 4569999999999976 999998641 1 22222 23334444333211 12445678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
||++|||||+.+|++|||||||++||+.+...+.+.+++..+ ++|+|+|||+++..+.||||++|++|++++.+.
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999988643 899999999999877899999999999998776
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.4e-52 Score=402.58 Aligned_cols=209 Identities=26% Similarity=0.427 Sum_probs=176.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC--CCCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~--~~~~~~~r~~ 309 (461)
.|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 49999999999643 34999999999999999999999999999999999999999999999999984 2334567889
Q ss_pred ceEEccCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 012523 310 LSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (461)
Q Consensus 310 i~~v~Q~~--~lf~~ti~~Nl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l 380 (461)
||||||+| .+|..|++||+.+.. ..+.+ ++.++++.+++.+ .......+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHHHH
Confidence 99999998 477889999996431 22332 3444555555433 3334457899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
||||+.+|++||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+++++|..-
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~ 229 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998864 38999999999999875 9999999999999988743
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.2e-51 Score=413.67 Aligned_cols=210 Identities=24% Similarity=0.386 Sum_probs=180.5
Q ss_pred ccEEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---
Q 012523 231 GRIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD--- 305 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~--- 305 (461)
..|+++||+++|+.. ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 359999999999643 235899999999999999999999999999999999999999999999999999988765
Q ss_pred HhhcceEEccCCccccc-cHHhhcCCC---CCCCHH----HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 306 LRTKLSIIPQEPTLFRG-SVRTNLDPL---GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~-ti~~Nl~~~---~~~~~~----~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
+|++||||||++.+|+. |++||+.+. ...+.+ ++.++++.+++.+. ......+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-----------TTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHH
Confidence 47889999999999875 999999642 122332 34455555555433 334457899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++|||||+.+|++||||||||+||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||||++|++|+|+++|..
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV 248 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999998863 38999999999999876 999999999999999874
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-50 Score=387.05 Aligned_cols=211 Identities=24% Similarity=0.401 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH-hhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~-r~~i 310 (461)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999953 459999999999999999999999999999999999999999999999999988777655 4559
Q ss_pred eEEccCCccccc-cHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
+||||++.+|+. |++||+.+.. ....++..+.+ .+.++.++ |++...++...+||||||||++|||||+.+
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999987 9999997532 11222222221 22333332 344445566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999998864 5899999999998765 599999999999998876
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=7.6e-51 Score=385.22 Aligned_cols=206 Identities=23% Similarity=0.283 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH---Hh-
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR- 307 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~---~r- 307 (461)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..+ +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4899999999953 45999999999999999999999999999999999999999999999999998877543 34
Q ss_pred hcceEEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 308 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
++++||||++.+|+. |++||+.+.. .... +++.++++..++ .........+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL-----------GDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----------TTCTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHH
Confidence 679999999998864 9999996421 1121 223334444433 33344555789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
|||||+.+|++|||||||++||+.+++.+.+.+++.. +++|+|++||+++.++.||++++|++|+++++|.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998863 4899999999999887799999999999999886
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.8e-50 Score=391.87 Aligned_cols=208 Identities=22% Similarity=0.279 Sum_probs=180.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|+++.|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999953 45999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEccCCcc-ccccHHhhcCCCCC-----CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 312 IIPQEPTL-FRGSVRTNLDPLGM-----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 312 ~v~Q~~~l-f~~ti~~Nl~~~~~-----~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
|++|++.+ |..|++||+.+... ..++++.++++..++.+. ......+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL-----------AQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTT-----------TTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 56799999975321 123445566666655332 22334679999999999999999
Q ss_pred c------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccchh
Q 012523 386 K------RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVNF 452 (461)
Q Consensus 386 ~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~~ 452 (461)
. +|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|..-
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~ 233 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPE 233 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9 9999999999999999999999999988642 5799999999999875 9999999999999988753
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.4e-50 Score=389.03 Aligned_cols=206 Identities=26% Similarity=0.415 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC--CCCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~--~~~~~~~r~~ 309 (461)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999953 35999999999999999999999999999999999999999999999999985 3345567888
Q ss_pred ceEEccCCccccc-cHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l 380 (461)
|+||||++.+|+. |++||+.+.. ..+. +++.++++..++. ........+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-----------DKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHHH
Confidence 9999999999876 9999996521 2222 2334445554443 33344557899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|.
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999998863 47899999999999875 99999999999998776
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.7e-50 Score=387.55 Aligned_cols=210 Identities=20% Similarity=0.269 Sum_probs=175.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHH-HHhhcc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~-~~r~~i 310 (461)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .+|+.+
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999953 3599999999999999999999999999999999999999999999999999877653 457789
Q ss_pred eEEccCCcccc-ccHHhhcCCCC-C---------------CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChh
Q 012523 311 SIIPQEPTLFR-GSVRTNLDPLG-M---------------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (461)
Q Consensus 311 ~~v~Q~~~lf~-~ti~~Nl~~~~-~---------------~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG 373 (461)
+||||++.+|. .|++||+.+.. . ...++.. ..+.+.++.+ |++........+||||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSGG 157 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCHH
Confidence 99999999886 59999997531 1 1111111 1123334443 3444555667789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 374 q~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|.
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 9999999999999999999999999999999999999998864 4799999999999886 499999999999998776
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-49 Score=384.13 Aligned_cols=207 Identities=24% Similarity=0.406 Sum_probs=177.4
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
+.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+|+.|
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 46999999999953 459999999999999999999999999999999999999999999999999876 456678899
Q ss_pred eEEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+||||++.+|+. |++||+.+.. .... +++.++++.+++.+. ......+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHHHH
Confidence 999999998876 9999996521 1222 234445555554332 33445689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 230 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTV 230 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999998864 47899999999999876 999999999999988763
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-49 Score=385.76 Aligned_cols=206 Identities=25% Similarity=0.381 Sum_probs=175.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC----------C
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----------M 301 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~----------~ 301 (461)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4999999999953 359999999999999999999999999999999999999999999999999861 4
Q ss_pred CH---HHHhhcceEEccCCccccc-cHHhhcCCCC----CCC----HHHHHHHHHHccHHHH-HHhCCCcccccccCCCC
Q 012523 302 GL---KDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKAT-ISRLPMLLDSSVSDEGE 368 (461)
Q Consensus 302 ~~---~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~----~~~----~~~~~~~~~~~~l~~~-i~~l~~gl~t~~~~~g~ 368 (461)
+. ..+|+.++||||++.+|+. |++||+.+.. ... ++++.++++..++.+. .+ ....
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-----------KYPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-----------SCGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-----------CCcc
Confidence 43 3467889999999998876 9999996521 122 2334556666666554 33 3346
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999998864 47899999999998875 9999999999999
Q ss_pred Eccc
Q 012523 447 FNNV 450 (461)
Q Consensus 447 ~~~~ 450 (461)
+.|.
T Consensus 233 ~~g~ 236 (262)
T 1b0u_A 233 EEGD 236 (262)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 8876
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2e-49 Score=384.94 Aligned_cols=205 Identities=29% Similarity=0.400 Sum_probs=177.2
Q ss_pred EEEEeEEEEeCCCC---CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 233 i~~~~v~~~y~~~~---~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
|+++|++++|+.++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999996222 4599999999999999999999999999999999999999999999999998642 67888
Q ss_pred ceEEccCC--ccccccHHhhcCCCCC------CCHHHHHHHHHHccHH--HHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 310 LSIIPQEP--TLFRGSVRTNLDPLGM------YSDNEIWEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 310 i~~v~Q~~--~lf~~ti~~Nl~~~~~------~~~~~~~~~~~~~~l~--~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
++||||+| .++..|++||+.+... ..++++.++++.+++. ++.++.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 4567899999975321 1234567788887776 5544433 579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999998863 48999999999999876 999999999999988763
No 30
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.6e-49 Score=398.09 Aligned_cols=207 Identities=22% Similarity=0.295 Sum_probs=173.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC--CCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~--~~~~~~r~~ 309 (461)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+ ......++.
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999953 459999999999999999999999999999999999999999999999999832 122235678
Q ss_pred ceEEccCCccccc-cHHhhcCCCCC---CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 310 LSIIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 310 i~~v~Q~~~lf~~-ti~~Nl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
||||||++.+|+. |++||+.+... .. ++++.++++.+++.++.+ ....+||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999999965 99999976421 12 234555666665544333 34467999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIREE--FPGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|||+.+|++||||||||+||+.+...+++.+.+. ..++|+|+|||+++.+.. ||||++|++|+|++.|..
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASP 223 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999998877654 248999999999998765 999999999999998874
No 31
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.3e-49 Score=387.10 Aligned_cols=204 Identities=23% Similarity=0.380 Sum_probs=170.0
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
.+.++++||+|.+ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 3469999999864 2499999999999999999999999999999999999999999999998 4
Q ss_pred ceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 310 i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
|+||||++.+|++|++||+. .....+....++++..++.+.+..+|.++++.+++.+.+||||||||++|||||+++|+
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999997 33334445566778889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHcCCcEEEEEccCchhhhhcCEEEEEeCCEEEEccch
Q 012523 390 ILILDEATASIDSATDAILQRII-REEFPGSTVITIAHRVPTITDSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 390 iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~ 451 (461)
+|||||||++||+.+++.+.+.+ ++..+++|+|++||+++.+..||++++|++|++++.|.+
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCH
Confidence 99999999999999999999864 444458899999999999888999999999999988764
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.2e-49 Score=399.68 Aligned_cols=205 Identities=23% Similarity=0.300 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999953 4599999999999999999999999999999999999999999999999999887765 46799
Q ss_pred EEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||+|++.+|+. |++||+.+.. ..++ +++.++++.+++.++. .....+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-----------TCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhHCCHHHHHHHHHHHH
Confidence 99999999975 9999997531 2333 2345555665554433 34446899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+|++||||||||+||+.++..+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 218 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999988643 7999999999988765 999999999999998864
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.1e-49 Score=386.90 Aligned_cols=207 Identities=21% Similarity=0.265 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC--CCCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~--~~~~~~~r~~ 309 (461)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999953 35999999999999999999999999999999999999999999999999987 6777788899
Q ss_pred ceEEccCCcc-ccc--cHHhhcCCCCC--------CCH---HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHH
Q 012523 310 LSIIPQEPTL-FRG--SVRTNLDPLGM--------YSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (461)
Q Consensus 310 i~~v~Q~~~l-f~~--ti~~Nl~~~~~--------~~~---~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~ 375 (461)
|+||||++.+ |.. |++||+.+... ..+ +++.++++..++ +........+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-----------SAKAQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHHHH
Confidence 9999999875 444 99999975321 122 223344444443 3334455578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEE--EEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTV--ITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+ |+|||+++.+. .||+|++|++|++++.|..
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999988643 7899 99999999886 4999999999999988763
No 34
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-49 Score=377.42 Aligned_cols=200 Identities=23% Similarity=0.322 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
++++|++++|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ..|++|+|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 34678999
Q ss_pred EccCCccccc-cHHhhcCCCCCC-C----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 313 IPQEPTLFRG-SVRTNLDPLGMY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~~~-~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
|||++.+|+. |++||+.+.... . ++++.++++..++ +........+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-----------AHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-----------TTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999876 999999764321 1 1233344444443 333344457899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
+|++|||||||++||+.+++.+.+.+++..+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~ 210 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999988642 7899999999998754 99999999999998876
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.1e-48 Score=375.74 Aligned_cols=202 Identities=19% Similarity=0.254 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++||+++ ++|+|+||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++..++...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3899999986 3899999999999999999999999999999999999999 99999999998888888899999
Q ss_pred EEccCCccccc-cHHhhcCCCCC--CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
||||++.+|.. |++||+.+... .+++++.++++..++.++ ......+||||||||++|||||+.+|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998865 99999976431 235566677777666443 23445789999999999999999999
Q ss_pred C-------EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 389 R-------ILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 389 ~-------iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
+ +|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|..
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9 999999999999999999999998863 4889999999999985 5999999999999987763
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-48 Score=393.07 Aligned_cols=205 Identities=22% Similarity=0.341 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+.++. +++||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999953 3599999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEccCCccccc-cHHhhcCCCCC---CC----HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||||++.+|+. |++||+.+... .+ ++++.++++..++.++.++ ...+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999976421 11 2345566666666544433 346799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+|++||||||||+||+.+++.+.+.|++..+ +.|+|+|||+++.+. .||||++|++|+|++.|..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~ 218 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP 218 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999988643 789999999999875 4999999999999988763
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.7e-49 Score=393.77 Aligned_cols=205 Identities=25% Similarity=0.379 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...++ .++.||
T Consensus 14 ~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 90 (355)
T 1z47_A 14 TIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVG 90 (355)
T ss_dssp EEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEE
T ss_pred eEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEE
Confidence 59999999999322 359999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||||++.+|+. |++||+.+.. ..+. +++.++++..++.++.+ ....+||||||||++||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-----------RFPHELSGGQQQRVALARA 159 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999999975 9999997531 2222 34555666666544433 3346799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
|+.+|++||||||||+||+.+++.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~ 229 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999988643 7899999999998765 99999999999998776
No 38
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.3e-48 Score=374.26 Aligned_cols=208 Identities=22% Similarity=0.260 Sum_probs=167.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC--CCCCceEEEECCEeCCCCCHHHH-hh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl--~~~~~G~i~i~g~~i~~~~~~~~-r~ 308 (461)
.++++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.+.+.... +.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 3899999999953 4599999999999999999999999999999999999 89999999999999988876655 45
Q ss_pred cceEEccCCccccc-cHHhhcCCCC----C--CCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCC-CChhHHH
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPLG----M--YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN-WSVGQRQ 376 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~~----~--~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~-lSgGq~Q 376 (461)
.++|+||+|.+|++ |++||+.+.. . ... +++.++++..++. .........+ |||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----------~~~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD----------ESYLSRYLNEGFSGGEKK 150 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC----------GGGGGSBTTCC----HHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC----------hhHhcCCcccCCCHHHHH
Confidence 69999999999876 9999986421 1 111 1233333333331 1112233355 9999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh--cCEEEEEeCCEEEEccch
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD--SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~vl~~G~i~~~~~~ 451 (461)
|++|||||+++|++||||||||+||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|..
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999875 47899999999999876 599999999999988874
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.8e-48 Score=391.98 Aligned_cols=205 Identities=22% Similarity=0.311 Sum_probs=170.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+.++. ++.||
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999953 3599999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEccCCccccc-cHHhhcCCCCC---CCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLGM---YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||||++.+|+. |++||+.+... .+. +++.++++..++.++. .....+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHH
Confidence 99999999865 99999986422 232 2345556665554433 34457899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+|++||||||||+||+.+++.+.+.|++..+ +.|+|+|||+++.+. .||||++|++|+|++.|..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 226 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSP 226 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999988643 789999999999875 5999999999999988763
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.8e-48 Score=390.25 Aligned_cols=202 Identities=23% Similarity=0.370 Sum_probs=174.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
|+++|++++|++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+.++ .+++|||
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999953 4 9999999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EccCCccccc-cHHhhcCCCC----CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 313 IPQEPTLFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 313 v~Q~~~lf~~-ti~~Nl~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|||++.+|+. |++||+.+.. ...++++.++++..++.++.+ ....+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999976 9999997531 112255666666666544333 33467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
|++||||||||+||+.+++.+.+.|++.. .++|+|+|||+++.+. .||||++|++|++++.|.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~ 211 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGK 211 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEEC
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999998863 3789999999998775 499999999999998776
No 41
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-48 Score=393.12 Aligned_cols=205 Identities=21% Similarity=0.322 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+.++. +++||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 3899999999953 3599999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEccCCccccc-cHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 312 IIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
||||++.+|+. |++||+.+. ..... +++.++++.+++.++ ......+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL-----------LNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTC-----------TTCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999753 12222 234455555555433 333446899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccch
Q 012523 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 384 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~~ 451 (461)
|+.+|++||||||||+||+.++..+.+.|++..+ +.|+|+|||+++.+. .||||++|++|+|++.|..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 218 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTP 218 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988643 789999999998875 4999999999999988763
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-48 Score=393.07 Aligned_cols=207 Identities=22% Similarity=0.332 Sum_probs=175.0
Q ss_pred cEEEEeEEEEeCCCCCc--cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC---HHHH
Q 012523 232 RIELEDLKVRYRPNTPL--VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDL 306 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~--~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~---~~~~ 306 (461)
.|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+.+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 3899999999953 45 999999999999999999999999999999999999999999999999986521 2234
Q ss_pred hhcceEEccCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 307 RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 307 r~~i~~v~Q~~~lf~~-ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
+++||||||++.+|+. |++||+.+.. ..+. +++.++++..++.++.+ ....+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHH
Confidence 6789999999999975 9999997642 1222 33555666666554433 33467999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
+|||||+.+|++||||||||+||+.+++.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|..
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999988642 7899999999998765 999999999999987763
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.9e-48 Score=391.45 Aligned_cols=205 Identities=20% Similarity=0.310 Sum_probs=174.0
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC------CCHHH
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS------MGLKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~------~~~~~ 305 (461)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+ .++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~- 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK- 79 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG-
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh-
Confidence 3899999999953 459999999999999999999999999999999999999999999999999865 4443
Q ss_pred HhhcceEEccCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 306 LRTKLSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~-~ti~~Nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
+++||||||++.+|+ .|++||+.+.. .... +++.++++..++.++. .....+||||||||
T Consensus 80 -~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QR 147 (372)
T 1g29_1 80 -DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-----------NRKPRELSGGQRQR 147 (372)
T ss_dssp -GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-----------TCCGGGSCHHHHHH
T ss_pred -HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCCcccCCHHHHHH
Confidence 578999999999986 49999997531 2222 2345555555554433 33446899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhh-cCEEEEEeCCEEEEccch
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~~ 451 (461)
++|||||+.+|++||||||||+||+.++..+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|..
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 224 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSP 224 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999999988643 7899999999998764 999999999999988763
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1e-47 Score=372.95 Aligned_cols=211 Identities=19% Similarity=0.246 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC--CCCCceEEEECCEeCCCCCHHHH-hh
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 308 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl--~~~~~G~i~i~g~~i~~~~~~~~-r~ 308 (461)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999953 4599999999999999999999999999999999999 57899999999999988776655 44
Q ss_pred cceEEccCCccccc-cHHhhcCCCC----------CCCHHHHHHHHHHccHHHHHHhCCCcccccc-cCCCC-CCChhHH
Q 012523 309 KLSIIPQEPTLFRG-SVRTNLDPLG----------MYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGE-NWSVGQR 375 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~-ti~~Nl~~~~----------~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~-~~~g~-~lSgGq~ 375 (461)
.++||||++.+|+. |+.+|+.+.. ..+.++..+ .+.+.++.+ |+++.. ..... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHH
Confidence 69999999998876 8999885310 112221111 122333332 343222 23333 5999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh--cCEEEEEeCCEEEEccch
Q 012523 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD--SDMVMVLSYGSFSFNNVN 451 (461)
Q Consensus 376 Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~vl~~G~i~~~~~~ 451 (461)
||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|..
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999998864 37899999999998875 899999999999998874
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-47 Score=369.82 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=171.4
Q ss_pred EEEEeEEEEeCCC--CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~--~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
++++|++++|++. ..++|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 1459999999999 9999999999999999999999999 9999999999998754 23 7789
Q ss_pred e-EEccCCccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhHHHHHHHHHHhh
Q 012523 311 S-IIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 311 ~-~v~Q~~~lf~~ti~~Nl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
+ ||||++.+ ..|++||+.+.. ...++++.++++..++ + ........+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKL-----------GEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTC-----------CGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCC-----------ChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 889999997531 2334455555555444 3 3445556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh-hcC-EEEEEeCCEEEEccch
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSD-MVMVLSYGSFSFNNVN 451 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d-~i~vl~~G~i~~~~~~ 451 (461)
.+|++|+|||||++||+.+++.+.+.|++..+ |+|++||+++.+. .|| ++++|++|++++.|..
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~ 210 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISV 210 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEH
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCH
Confidence 99999999999999999999999999988654 9999999999876 599 9999999999998873
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.5e-47 Score=366.32 Aligned_cols=193 Identities=21% Similarity=0.299 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. +++.++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999622 4599999999999999999999999999999999999999999998 356799
Q ss_pred EEccCCccc-cccHHhhcCCCCC--------CCH---HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 312 IIPQEPTLF-RGSVRTNLDPLGM--------YSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 312 ~v~Q~~~lf-~~ti~~Nl~~~~~--------~~~---~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
||||++.+| ..|++||+.+... ..+ +++.++++..++.+ .......+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-----------LAKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----------HhcCChhhCCHHHHHHHH
Confidence 999999887 5699999975321 111 23445555555433 233445789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CcEEEEEccCchhhh-hcCEEEEEeCCEEEEccc
Q 012523 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-P-GSTVITIAHRVPTIT-DSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 380 lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~vl~~G~i~~~~~ 450 (461)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+. .||++++|++|+ ++.|.
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~ 211 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGE 211 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEE
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCC
Confidence 9999999999999999999999999999999998864 3 789999999999885 599999999999 88775
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-47 Score=359.22 Aligned_cols=193 Identities=26% Similarity=0.382 Sum_probs=163.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 5999999999953 5999999999999999999999999999999999999999999999999885 3578899
Q ss_pred EEccCCccccc-cHHhhcCCCC-----CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 312 IIPQEPTLFRG-SVRTNLDPLG-----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 312 ~v~Q~~~lf~~-ti~~Nl~~~~-----~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
||||++.+|.. |++||+.+.. ...++++.++++..+ ++.. .....+||||||||++|||||+
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 9999996421 112344555555443 3444 5566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+++ +.+|+|
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999999999998864 37899999999999887 67765 556665
No 48
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.4e-38 Score=350.37 Aligned_cols=198 Identities=21% Similarity=0.306 Sum_probs=149.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|++|+|++..+++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|. .+++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 49999999999754356999999999999999999999999999999999999999999999862 1356
Q ss_pred EEccCCcc-----ccc----------------------------------------------------------------
Q 012523 312 IIPQEPTL-----FRG---------------------------------------------------------------- 322 (461)
Q Consensus 312 ~v~Q~~~l-----f~~---------------------------------------------------------------- 322 (461)
|++|++.. ...
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 66655421 011
Q ss_pred --cHHhhcCCCC------------------------------------------CCCHHHHHHHHHHccHHHHHHhCCCc
Q 012523 323 --SVRTNLDPLG------------------------------------------MYSDNEIWEAMEKCQLKATISRLPML 358 (461)
Q Consensus 323 --ti~~Nl~~~~------------------------------------------~~~~~~~~~~~~~~~l~~~i~~l~~g 358 (461)
|++||+.+.. ...++++.+.++..+
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lG----------- 888 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLG----------- 888 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTT-----------
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcC-----------
Confidence 2333332210 001122333333333
Q ss_pred cccc--ccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cC
Q 012523 359 LDSS--VSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SD 435 (461)
Q Consensus 359 l~t~--~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d 435 (461)
++.. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||
T Consensus 889 L~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~D 966 (986)
T 2iw3_A 889 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTE 966 (986)
T ss_dssp CCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCC
T ss_pred CCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCC
Confidence 3322 13345689999999999999999999999999999999999999999999765 5799999999999865 99
Q ss_pred EEEEEeCCEEEEccchhh
Q 012523 436 MVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 436 ~i~vl~~G~i~~~~~~~~ 453 (461)
+|++|++|++++.|.+|-
T Consensus 967 rVivL~~G~Iv~~G~~~~ 984 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGHNWV 984 (986)
T ss_dssp EEECCBTTBCCC------
T ss_pred EEEEEECCEEEEeCCccc
Confidence 999999999999888764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-38 Score=333.88 Aligned_cols=193 Identities=25% Similarity=0.313 Sum_probs=157.5
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 5999999999953 3689999999999999999999999999999999999999999985 13699
Q ss_pred EEccCCcc-ccccHHhhcCCC-C-C-CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 312 IIPQEPTL-FRGSVRTNLDPL-G-M-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 312 ~v~Q~~~l-f~~ti~~Nl~~~-~-~-~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
||||++.. +..|+.+|+... . . ...+.+.++++.. |+.........+||||||||++|||||+.+
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 466998887521 0 0 0112222222222 333344555678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeC--CEEEEccch
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GSFSFNNVN 451 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~--G~i~~~~~~ 451 (461)
|++|||||||++||+.+...+.+.|++.. .+.|+|+|||+++.+.. ||||++|++ |+++..|..
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~ 488 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPP 488 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCC
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCH
Confidence 99999999999999999999999998863 38899999999999875 999999986 777766653
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.9e-38 Score=335.97 Aligned_cols=193 Identities=24% Similarity=0.315 Sum_probs=157.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.++++|+++.|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.+ +..++
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 5999999999953 2689999999999999999999999999999999999999999976 23699
Q ss_pred EEccCCcc-ccccHHhhcCCC-C-CC-CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 312 IIPQEPTL-FRGSVRTNLDPL-G-MY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 312 ~v~Q~~~l-f~~ti~~Nl~~~-~-~~-~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|+||++.. +..|+.+|+... . .. ..+.+.++++..+ +.........+||||||||++|||||+.+
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG-----------IIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT-----------CTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC-----------CchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 466999988532 0 00 1122233333333 33333445578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeC--CEEEEccch
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GSFSFNNVN 451 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~--G~i~~~~~~ 451 (461)
|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||||++|++ |++...|..
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p 558 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPP 558 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCC
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCH
Confidence 99999999999999999999999998863 48999999999999875 999999986 777766653
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-37 Score=328.65 Aligned_cols=186 Identities=20% Similarity=0.272 Sum_probs=154.9
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
..++++|+++.|++ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++| ..+
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 35899999999953 368888999999999999999999999999999999999999999765 358
Q ss_pred eEEccCCcc-ccccHHhhcCCCC-C---CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 311 SIIPQEPTL-FRGSVRTNLDPLG-M---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 311 ~~v~Q~~~l-f~~ti~~Nl~~~~-~---~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
+|+||++.. +..|+++|+.... . .......++++..++. ........+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-----------RLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-----------GCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999865 4679999986321 1 1222334444444443 3334455789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeC
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY 442 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~ 442 (461)
.+|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||||++|++
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999998863 47899999999999876 999999986
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-37 Score=333.26 Aligned_cols=197 Identities=24% Similarity=0.338 Sum_probs=155.4
Q ss_pred cEEE--------EeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE---------EEC
Q 012523 232 RIEL--------EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LID 294 (461)
Q Consensus 232 ~i~~--------~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i---------~i~ 294 (461)
.|++ +|++++|++. ..+|+|+| ++++||++||+||||||||||+|+|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 3788 8999999643 24899999 999999999999999999999999999999999995 345
Q ss_pred CEeCCCCCHHH--HhhcceEEccCCc----cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCC
Q 012523 295 GLDICSMGLKD--LRTKLSIIPQEPT----LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 368 (461)
Q Consensus 295 g~~i~~~~~~~--~r~~i~~v~Q~~~----lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~ 368 (461)
|.++..+.... .+..+++++|... ++.+|++||+.... ..+++.++++..++.+. ......
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~-----------~~~~~~ 227 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENV-----------LDRELH 227 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTG-----------GGSBGG
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCch-----------hCCChh
Confidence 65443211111 1345888888743 34569999985321 12345566666665432 223346
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCC
Q 012523 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G 443 (461)
+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 799999999999999999999999999999999999999999998864 48999999999998876 9999999865
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-37 Score=329.18 Aligned_cols=196 Identities=25% Similarity=0.316 Sum_probs=150.5
Q ss_pred EEE-EeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE---------EECCEeCCCCC
Q 012523 233 IEL-EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LIDGLDICSMG 302 (461)
Q Consensus 233 i~~-~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i---------~i~g~~i~~~~ 302 (461)
.++ +||+++|++. ..+++|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 445 5899999643 24899999 999999999999999999999999999999999995 34565442211
Q ss_pred HHH--HhhcceEEccCCccc----cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 303 LKD--LRTKLSIIPQEPTLF----RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 303 ~~~--~r~~i~~v~Q~~~lf----~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
... .+..+++++|+...+ .+|+.+|+.... ..+++.++++..++.+ .......+|||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~-----------~~~~~~~~LSgGekQ 165 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELEN-----------VLEREIQHLSGGELQ 165 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTT-----------TTTSBGGGCCHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCCh-----------hhhCChhhCCHHHHH
Confidence 111 123588999975433 358888874211 1234555666655532 223334679999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhh-cCEEEEEeCC
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G 443 (461)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++|
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999998863 48899999999998876 9999999864
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=318.16 Aligned_cols=190 Identities=23% Similarity=0.285 Sum_probs=153.8
Q ss_pred EeEEEEeCCCCCccccceeEEeeCC-----cEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 236 EDLKVRYRPNTPLVLKGITCTFKEG-----TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 236 ~~v~~~y~~~~~~~l~~i~l~i~~G-----e~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
++++|+|++. ..+++++||++++| |++||+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 5678889643 34899999999999 8899999999999999999999999999962 21 2469
Q ss_pred eEEccCCcc-ccccHHhhcCC--CCC-CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 311 SIIPQEPTL-FRGSVRTNLDP--LGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 311 ~~v~Q~~~l-f~~ti~~Nl~~--~~~-~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
+|+||++.. |..|+++|+.. ... ...+...++++..++. ........+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-----------DIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-----------TTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999764 67799998742 111 2233344445544432 23344557899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeC--CEEEEccc
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GSFSFNNV 450 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~--G~i~~~~~ 450 (461)
+|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||||++|++ |+++..|.
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~ 553 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARA 553 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCC
Confidence 999999999999999999999999998853 48999999999998876 999999997 88888775
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2e-34 Score=318.99 Aligned_cols=189 Identities=21% Similarity=0.284 Sum_probs=155.1
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcce
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
.+...|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +.+++
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEE
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEE
Confidence 5888899999953 459999999999999999999999999999999995 544 5544321 12478
Q ss_pred EEccCC-ccc-cccHHhhcCCC-CCCCHHHHHHHHHHccH-HHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 312 IIPQEP-TLF-RGSVRTNLDPL-GMYSDNEIWEAMEKCQL-KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 312 ~v~Q~~-~lf-~~ti~~Nl~~~-~~~~~~~~~~~~~~~~l-~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|++|++ .++ ..|+.+|+... ... ++++.++++..++ .+..++. ..+||||||||++|||||+.+
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHHHTT
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHHhcC
Confidence 999986 444 45999998641 112 5677788888887 3444332 257999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCEEE-Eccc
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGSFS-FNNV 450 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~-~~~~ 450 (461)
|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~ 629 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGN 629 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESC
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCC
Confidence 999999999999999999999999988 58999999999999876 9999999999997 4564
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.8e-35 Score=322.11 Aligned_cols=196 Identities=21% Similarity=0.263 Sum_probs=130.6
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHH---------------------HHHccCCCCC-------ceEEEECCEeC
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------------------SALFRLVEPE-------NGRILIDGLDI 298 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll---------------------~ll~gl~~~~-------~G~i~i~g~~i 298 (461)
..+|+|+||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8999999998 55666666554
Q ss_pred CCCCHHHHhhcceEEccCCccc--------------------cccHHhhcCCCCCC--CH--HHH-----HHHHHHccHH
Q 012523 299 CSMGLKDLRTKLSIIPQEPTLF--------------------RGSVRTNLDPLGMY--SD--NEI-----WEAMEKCQLK 349 (461)
Q Consensus 299 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~~Nl~~~~~~--~~--~~~-----~~~~~~~~l~ 349 (461)
.. ..++.+++|+|.+.++ ..|++||+.+.... .+ .+. .++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 2245577777755432 34889998753211 11 111 1111111
Q ss_pred HHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEc
Q 012523 350 ATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATASIDSATDAILQRIIREEF-PGSTVITIA 425 (461)
Q Consensus 350 ~~i~~l~~gl~t~-~~~~g~~lSgGq~Qrl~lARal~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 425 (461)
+.+..+ |++.. ......+||||||||++|||||+.+|+ +|||||||++||+.+...+.+.|++.. .++|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123332 23221 234456899999999999999999998 999999999999999999999998864 479999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEEEccch
Q 012523 426 HRVPTITDSDMVMVL------SYGSFSFNNVN 451 (461)
Q Consensus 426 H~~~~~~~~d~i~vl------~~G~i~~~~~~ 451 (461)
|+++.+..||+|++| ++|++++.|..
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCH
Confidence 999998889999999 89999998864
No 57
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=4.4e-39 Score=316.22 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCC-CcccEEEEeEEEEeCCCCCccccceeEEeeCC
Q 012523 182 SIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWP-SHGRIELEDLKVRYRPNTPLVLKGITCTFKEG 260 (461)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G 260 (461)
.++..+...+..++++..+.+|+.++++.+++... .. ..++ ..+.|+++||+|+|+ .++|+++||+|++|
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~---~~---~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~G 126 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT---GE---GSWKSILTFFNYQNIELITF---INALKLWLKGIPKK 126 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC---SS---CCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---CC---CcccccCCeEEEEEEEEEcC---hhhhccceEEecCC
Confidence 34556667777888899999999999975432110 00 1111 123589999999996 45999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh-hcCCCCCCCHHHH
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT-NLDPLGMYSDNEI 339 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~-Nl~~~~~~~~~~~ 339 (461)
++++|+||||||||||+++|+|++ +|+| +++++|++.+|.+|+++ |+.+..+.++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~--- 182 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH--- 182 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH---
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH---
Confidence 999999999999999999999999 7988 35789999999999997 9876533332
Q ss_pred HHHHHHccHHHHHHh-CCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC
Q 012523 340 WEAMEKCQLKATISR-LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPG 418 (461)
Q Consensus 340 ~~~~~~~~l~~~i~~-l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~ 418 (461)
++.++++. +|+|++ |.+|||||||| |||++++|++|| ||+||+.+++.+..
T Consensus 183 -------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------- 234 (305)
T 2v9p_A 183 -------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------- 234 (305)
T ss_dssp -------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------
T ss_pred -------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------
Confidence 34566777 899987 78999999999 999999999999 99999999887752
Q ss_pred cEEEEEccCchhhhhcCEEEEEeCCEEEEccchhh
Q 012523 419 STVITIAHRVPTITDSDMVMVLSYGSFSFNNVNFC 453 (461)
Q Consensus 419 ~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~~~~ 453 (461)
+|||++.++.||+| +|++|++++.|.+-.
T Consensus 235 -----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~e 263 (305)
T 2v9p_A 235 -----LHSRVQTFRFEQPC-TDESGEQPFNITDAD 263 (305)
T ss_dssp -----GTTTEEEEECCCCC-CCC---CCCCCCHHH
T ss_pred -----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHH
Confidence 29999999999999 999999999988643
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=314.94 Aligned_cols=196 Identities=24% Similarity=0.317 Sum_probs=141.8
Q ss_pred eEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEE-----------ECCEeCCCCCHHH
Q 012523 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLKD 305 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~-----------i~g~~i~~~~~~~ 305 (461)
|++++|+++. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++..+....
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 4578886543 4677777 6899999999999999999999999999999999982 3332222111112
Q ss_pred Hhhcce--EEccCCcc----ccc---cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 306 LRTKLS--IIPQEPTL----FRG---SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 306 ~r~~i~--~v~Q~~~l----f~~---ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
+.+.+. +.+|.... +.+ ++.+++.......++++.++++..++.+ .......+|||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGe~Q 228 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLEN-----------VLKRDIEKLSGGELQ 228 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTG-----------GGGSCTTTCCHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcc-----------hhCCChHHCCHHHHH
Confidence 222222 23332211 111 3444443222223455566666655433 334455789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhh-cCEEEEEeCCEE
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGSF 445 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i 445 (461)
|++|||||+.+|++||||||||+||+.+...+.+.++++.+ ++|+|+|||+++.+.. ||||++|++|..
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999998654 7899999999999876 999999988653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-35 Score=313.74 Aligned_cols=192 Identities=21% Similarity=0.300 Sum_probs=146.6
Q ss_pred eEEEEeCCCCCccccceeEEe-eCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE-----------EECCEeCCCCCHH
Q 012523 237 DLKVRYRPNTPLVLKGITCTF-KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGLK 304 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i-~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i-----------~i~g~~i~~~~~~ 304 (461)
+++.+|+.+. ++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 4 ~~~~~~~~~~---f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 4 EVIHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CEEEESSTTS---CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCceecCCCc---eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 4677897654 34444554 4899999999999999999999999999999998 5677665332111
Q ss_pred HH------hhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 305 DL------RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 305 ~~------r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
.. ...+.+++|.+.++.+++++++.... ..++..++++..++.+. ......+||||||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNL-----------WNKDANILSGGGLQRL 147 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHH
Confidence 11 12344555556667788888764211 12344556666655332 2233467999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhh-cCEEEEEeCCE
Q 012523 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 379 ~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~vl~~G~ 444 (461)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999998778999999999998876 99999998754
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.5e-34 Score=314.93 Aligned_cols=194 Identities=25% Similarity=0.273 Sum_probs=139.4
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc----------------------cCCCCCceEEEECCEeCCCCCHH
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------------------RLVEPENGRILIDGLDICSMGLK 304 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~----------------------gl~~~~~G~i~i~g~~i~~~~~~ 304 (461)
..+|+|+||+|++||++||+||||||||||+++++ |+.. .+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998753 3333 357899999887654322
Q ss_pred HHhhc-----------------------------------------ceEEccCCccc-----------------------
Q 012523 305 DLRTK-----------------------------------------LSIIPQEPTLF----------------------- 320 (461)
Q Consensus 305 ~~r~~-----------------------------------------i~~v~Q~~~lf----------------------- 320 (461)
..... .|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 11111 12333322221
Q ss_pred ----------cccHHhhcCCCCCCCH-HHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 321 ----------RGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 321 ----------~~ti~~Nl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
..|++||+.+.....+ ++.. +.+..+ |+. ...+....+||||||||++|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKL---------ETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHH---------HHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHH---------HHHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 2366666654322111 1111 222232 222 2345667889999999999999999887
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEE------eCCEEEEccchh
Q 012523 389 ---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGSFSFNNVNF 452 (461)
Q Consensus 389 ---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl------~~G~i~~~~~~~ 452 (461)
++|||||||++||+.+...+.+.+++.. +++|+|+|||+++.++.||||++| ++|+|+++|..-
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 5999999999999999999999998864 489999999999999889999999 899999998753
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=4.2e-33 Score=286.68 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=148.1
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC--------------------------------------CCceE
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--------------------------------------PENGR 290 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~--------------------------------------~~~G~ 290 (461)
.+++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 789999999999 999999999999999999966653 45799
Q ss_pred EEECCEeCCCCCHHHHhhc-ceEEccCCccccccHHhhcCCCCCCCH---HH-------HHHHHH---------------
Q 012523 291 ILIDGLDICSMGLKDLRTK-LSIIPQEPTLFRGSVRTNLDPLGMYSD---NE-------IWEAME--------------- 344 (461)
Q Consensus 291 i~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~ti~~Nl~~~~~~~~---~~-------~~~~~~--------------- 344 (461)
+++||.+++..+..++... +++++|++.++..+..++..+...... .. ..++.+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999876556666666 899999988776554433221111110 00 000000
Q ss_pred ---------------------------------HccHHHHHHhC--CC----------------cccc---cccCCCCC-
Q 012523 345 ---------------------------------KCQLKATISRL--PM----------------LLDS---SVSDEGEN- 369 (461)
Q Consensus 345 ---------------------------------~~~l~~~i~~l--~~----------------gl~t---~~~~~g~~- 369 (461)
...+.+.+..+ |. |++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00011222222 11 2221 23333333
Q ss_pred -------CChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEE
Q 012523 370 -------WSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 370 -------lSgGq~Qrl~lARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
||||||||++|||+++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 7999999999999999999 9999999999999999999999999987789999999999998889999999
Q ss_pred ----eCCEEEEc
Q 012523 441 ----SYGSFSFN 448 (461)
Q Consensus 441 ----~~G~i~~~ 448 (461)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998753
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2.9e-32 Score=301.56 Aligned_cols=195 Identities=23% Similarity=0.267 Sum_probs=139.9
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHH---------HHHccCCC------CCce------EEEECCEeCCCCCH---
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------SALFRLVE------PENG------RILIDGLDICSMGL--- 303 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll---------~ll~gl~~------~~~G------~i~i~g~~i~~~~~--- 303 (461)
..|+|+||+|++|++++|+|+||||||||+ +++.+... +.+| .+.++..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 379999999999999999999999999997 34444333 3333 35566555533211
Q ss_pred -------HHHh-------------------------------hcceEEccCCccccc-----------------------
Q 012523 304 -------KDLR-------------------------------TKLSIIPQEPTLFRG----------------------- 322 (461)
Q Consensus 304 -------~~~r-------------------------------~~i~~v~Q~~~lf~~----------------------- 322 (461)
...| +..|+++|+..+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0111 235777777665543
Q ss_pred ----------cHHhhcCCCCCCC-HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC---
Q 012523 323 ----------SVRTNLDPLGMYS-DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN--- 388 (461)
Q Consensus 323 ----------ti~~Nl~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p--- 388 (461)
|+.+++.++.... .++.. +.+..+.-++ ..+++.+.+||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~---------~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTL---------QVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHH---------HHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHH---------HHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 2333332221110 11112 2333332222 2467888999999999999999999876
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEE------eCCEEEEccchh
Q 012523 389 RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGSFSFNNVNF 452 (461)
Q Consensus 389 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl------~~G~i~~~~~~~ 452 (461)
++|||||||+|||+.+.+.+++.|+++. +++|||+|||+++.++.||+|++| ++|+|+++|.+-
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 7999999999999999999999998864 489999999999999999999999 899999999854
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-35 Score=305.55 Aligned_cols=185 Identities=15% Similarity=0.084 Sum_probs=144.9
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce-E-EEECCEeCCCCCHHHHhhcc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-R-ILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G-~-i~i~g~~i~~~~~~~~r~~i 310 (461)
++++||+|+| .++||++++|++++|+||||||||||+|+|+|++.|++| + |.+|| + .|+.+
T Consensus 119 i~~~nl~~~y--------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i 181 (460)
T 2npi_A 119 KYIYNLHFML--------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPI 181 (460)
T ss_dssp HHHHHHHHHH--------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCS
T ss_pred hhhhhhhehh--------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCe
Confidence 5555555555 379999999999999999999999999999999999999 9 99998 1 36789
Q ss_pred eEEccCCcccc----ccHHhhcCCCCCC-----CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 311 SIIPQEPTLFR----GSVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 311 ~~v~Q~~~lf~----~ti~~Nl~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
+++||++.+|. .|+++|+ +.... .++++.++++.. |++.... ..+||||||||+++|
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQV 247 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHHH
Confidence 99999986543 4899998 43221 111122222222 3333332 578999999999999
Q ss_pred HH--hhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCch------hhh-hcCE-----EEEEe-
Q 012523 382 RV--LLKRNRI----LILDE-ATASIDSATDAILQRIIREEFPGSTVITIAHRVP------TIT-DSDM-----VMVLS- 441 (461)
Q Consensus 382 Ra--l~~~p~i----liLDE-pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~------~~~-~~d~-----i~vl~- 441 (461)
|| |+.+|++ ||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .++ .||+ |++|+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 99 9999999 99999 99999999 66777776654 679999999987 444 4999 99999
Q ss_pred CCEEEEccchh
Q 012523 442 YGSFSFNNVNF 452 (461)
Q Consensus 442 ~G~i~~~~~~~ 452 (461)
+|+++ .|..-
T Consensus 325 ~G~iv-~g~~~ 334 (460)
T 2npi_A 325 LDGVS-AVDDV 334 (460)
T ss_dssp CTTCC-CCCHH
T ss_pred CCcEE-ECCHH
Confidence 99999 77643
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=2e-31 Score=292.63 Aligned_cols=208 Identities=23% Similarity=0.314 Sum_probs=148.7
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHH-HccCC-------CC----------------
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISA-LFRLV-------EP---------------- 286 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~l-l~gl~-------~~---------------- 286 (461)
..++++|+++ ..|+|+||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999975 16999999999999999999999999999996 66543 22
Q ss_pred --Cce-------EEEECCEeCCCCCH----------HHHhhcceEEc---------cCC---------------------
Q 012523 287 --ENG-------RILIDGLDICSMGL----------KDLRTKLSIIP---------QEP--------------------- 317 (461)
Q Consensus 287 --~~G-------~i~i~g~~i~~~~~----------~~~r~~i~~v~---------Q~~--------------------- 317 (461)
.+| .|.+||.++...+. +.+|+.++++| +..
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 467 78999988764332 23343333222 211
Q ss_pred -cc------------------------cc-ccHHhhcCCCCCCCHHHHHHHH----HHccHHHHHHhCCCcccc-cccCC
Q 012523 318 -TL------------------------FR-GSVRTNLDPLGMYSDNEIWEAM----EKCQLKATISRLPMLLDS-SVSDE 366 (461)
Q Consensus 318 -~l------------------------f~-~ti~~Nl~~~~~~~~~~~~~~~----~~~~l~~~i~~l~~gl~t-~~~~~ 366 (461)
.+ +. .++.||+.+. -.+..... +.....+.+..+ |+.. .++..
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~lt----v~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~ 727 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALT----VDEAHDFFADESAIFRALDTLREV--GLGYLRLGQP 727 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCB----HHHHHHHTTTSHHHHHHHHHHHHT--TCTTSBTTCC
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhcc----HHHHHHHhhcchHHHHHHHHHHHc--CCCcccccCC
Confidence 00 11 1445554321 00000000 001123445554 3433 35677
Q ss_pred CCCCChhHHHHHHHHHHhhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEE--
Q 012523 367 GENWSVGQRQLFCLGRVLLKR---NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL-- 440 (461)
Q Consensus 367 g~~lSgGq~Qrl~lARal~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl-- 440 (461)
..+||||||||++|||+|+++ |++|||||||++||+.+.+.+.+.|+++. .+.|||+|||+++.++.||||++|
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p 807 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGP 807 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECS
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECC
Confidence 789999999999999999996 69999999999999999999999998863 589999999999999889999999
Q ss_pred ----eCCEEEEccch
Q 012523 441 ----SYGSFSFNNVN 451 (461)
Q Consensus 441 ----~~G~i~~~~~~ 451 (461)
++|+|++.|..
T Consensus 808 ~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 808 GAGEDGGRLVAQGTP 822 (842)
T ss_dssp SSGGGCCSEEEEECH
T ss_pred CCCCCCCEEEEEcCH
Confidence 79999988763
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=3.1e-30 Score=283.61 Aligned_cols=204 Identities=24% Similarity=0.287 Sum_probs=147.0
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc-cCC-------CCCce-------------
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLV-------EPENG------------- 289 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~-gl~-------~~~~G------------- 289 (461)
..++++|++. ..|+|+||+|++||++||+|+||||||||++.++ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 3588998852 2699999999999999999999999999999864 211 11223
Q ss_pred EEEECCEeCCCCC---HH-------HHh---------hcceEEccCCccc------------------------------
Q 012523 290 RILIDGLDICSMG---LK-------DLR---------TKLSIIPQEPTLF------------------------------ 320 (461)
Q Consensus 290 ~i~i~g~~i~~~~---~~-------~~r---------~~i~~v~Q~~~lf------------------------------ 320 (461)
.|.+||.++...+ +. ..| +.+||++|...+.
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788988875321 11 111 3468888854321
Q ss_pred ----------------c---------ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccc-cccCCCCCCChhH
Q 012523 321 ----------------R---------GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ 374 (461)
Q Consensus 321 ----------------~---------~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t-~~~~~g~~lSgGq 374 (461)
. .|+.+|+.++.... ++. ...+.+..+ |+.. ..+....+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~------~~~~~L~~~--gL~~~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIK------RKLETLYDV--GLGYMKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHH------HHHHHHHHT--TCSSSBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHH------HHHHHHHHc--CCCcccccCchhhCCHHH
Confidence 0 12222222211110 010 112344444 4544 5677788999999
Q ss_pred HHHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEE------eCCE
Q 012523 375 RQLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGS 444 (461)
Q Consensus 375 ~Qrl~lARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl------~~G~ 444 (461)
|||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. .+.|||+|||+++.++.||||++| ++|+
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCE
Confidence 99999999999875 9999999999999999999999998864 589999999999999889999999 7999
Q ss_pred EEEccch
Q 012523 445 FSFNNVN 451 (461)
Q Consensus 445 i~~~~~~ 451 (461)
|++.|..
T Consensus 931 Iv~~g~~ 937 (972)
T 2r6f_A 931 IVAVGTP 937 (972)
T ss_dssp EEEEESH
T ss_pred EEEecCH
Confidence 9987763
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=4.2e-30 Score=283.49 Aligned_cols=204 Identities=24% Similarity=0.310 Sum_probs=144.6
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc-c----CCC---CCceE------------
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-R----LVE---PENGR------------ 290 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~-g----l~~---~~~G~------------ 290 (461)
..++++|++. ..|+|+||+|++||++||+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 3589999852 2699999999999999999999999999999853 2 221 23343
Q ss_pred -EEECCEeCCCC---CHH-------HHh---------hcceEEccCCcc---------------------cc--------
Q 012523 291 -ILIDGLDICSM---GLK-------DLR---------TKLSIIPQEPTL---------------------FR-------- 321 (461)
Q Consensus 291 -i~i~g~~i~~~---~~~-------~~r---------~~i~~v~Q~~~l---------------------f~-------- 321 (461)
|.+|+.++... ++. ..| +..||++|...+ |-
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 55666665321 111 111 346788775322 00
Q ss_pred ------------------ccHHhh--------cCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccc-cccCCCCCCChhH
Q 012523 322 ------------------GSVRTN--------LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ 374 (461)
Q Consensus 322 ------------------~ti~~N--------l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t-~~~~~g~~lSgGq 374 (461)
.++.+| +.++.... .+. ...+.+..+ |+.. ..+....+|||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~--~~~------~~~~~L~~l--gL~~~~l~~~~~~LSGGe 868 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA--GVH------RYLRTLVDV--GLGYVRLGQPAPTLSGGE 868 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH--HHH------HHHHHHHHT--TGGGSBTTCCGGGSCHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch--HHH------HHHHHHHHc--CCCcccccCccccCCHHH
Confidence 122222 21111100 000 112344444 4444 5677788999999
Q ss_pred HHHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEE------eCCE
Q 012523 375 RQLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGS 444 (461)
Q Consensus 375 ~Qrl~lARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl------~~G~ 444 (461)
|||++|||+|+++| ++|||||||++||+.+.+.+.+.|+++. .+.|||+|||+++.++.||+|++| ++|+
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~ 948 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGT 948 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSE
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCE
Confidence 99999999999875 9999999999999999999999998863 589999999999999889999999 6899
Q ss_pred EEEccch
Q 012523 445 FSFNNVN 451 (461)
Q Consensus 445 i~~~~~~ 451 (461)
|++.|..
T Consensus 949 Iv~~G~~ 955 (993)
T 2ygr_A 949 VVAQGTP 955 (993)
T ss_dssp EEEEECH
T ss_pred EEEecCH
Confidence 9988763
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=3.9e-29 Score=248.94 Aligned_cols=196 Identities=17% Similarity=0.264 Sum_probs=140.2
Q ss_pred cceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC----------------------------------------------
Q 012523 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV---------------------------------------------- 284 (461)
Q Consensus 251 ~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~---------------------------------------------- 284 (461)
+++++++.+| .++|+||||||||||+++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998443
Q ss_pred ----CCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc-cccHHhhcCCCCCC----------------CHHHHHHHH
Q 012523 285 ----EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMY----------------SDNEIWEAM 343 (461)
Q Consensus 285 ----~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~Nl~~~~~~----------------~~~~~~~~~ 343 (461)
.+.+|.+.+||.+++..+...+...+++.||+..++ .+++.+|+...... +.+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344678999999875444556666788889988765 77888887542110 001111111
Q ss_pred HHc------------cH-HHHHHhCCCccccccc------CCCCCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCC
Q 012523 344 EKC------------QL-KATISRLPMLLDSSVS------DEGENWSVGQRQLFCLGRVLL----KRNRILILDEATASI 400 (461)
Q Consensus 344 ~~~------------~l-~~~i~~l~~gl~t~~~------~~g~~lSgGq~Qrl~lARal~----~~p~iliLDEpts~L 400 (461)
+.. .+ ......++.|+++.++ .....||||||||++|||||+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 0011234446655432 234689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEE--EEEeCCEEEE
Q 012523 401 DSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMV--MVLSYGSFSF 447 (461)
Q Consensus 401 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i--~vl~~G~i~~ 447 (461)
|+...+.+.+.+++..+++|+|++||+++.++.||++ ++|++|+-..
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~ 303 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAI 303 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEE
Confidence 9999999999999886688999999998888889987 8888887543
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=6.4e-31 Score=245.45 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=100.8
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhh
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 327 (461)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+++.++|+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589985 89999999999999999999999999 99999994 333321 2224577899999987 566
Q ss_pred c-CCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHH
Q 012523 328 L-DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406 (461)
Q Consensus 328 l-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~ 406 (461)
+ .+.... .+.+........+.+.++. |+ |||||++|||||+.+|++|||||||++ +..
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 6 221000 0000000001112222222 11 999999999999999999999999999 788
Q ss_pred HHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 407 ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 407 ~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
.+.+.|++..+++|+| +||+++.++. +...++|.
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 8888888774578999 9999886653 34445554
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=6.8e-27 Score=236.54 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=75.7
Q ss_pred CCCCCCChhHHHHHHHHHHhh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEE
Q 012523 365 DEGENWSVGQRQLFCLGRVLL------KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMV 437 (461)
Q Consensus 365 ~~g~~lSgGq~Qrl~lARal~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i 437 (461)
....+||||||||++||||++ .+|++|||||||++||+.+...+.+.+++.. .++|+|+|||+++..+.||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345689999999999999999 7999999999999999999999999998864 479999999999998889999
Q ss_pred EEEeCCEEEE
Q 012523 438 MVLSYGSFSF 447 (461)
Q Consensus 438 ~vl~~G~i~~ 447 (461)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=7.2e-28 Score=217.99 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=105.1
Q ss_pred ceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCc--cccccHHhhcC
Q 012523 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT--LFRGSVRTNLD 329 (461)
Q Consensus 252 ~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~ti~~Nl~ 329 (461)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++..+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999999653 21122 223333 66777753 1122222211
Q ss_pred CCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHH-----
Q 012523 330 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT----- 404 (461)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~----- 404 (461)
.... ...+..|+.+.+.. -...|||||||++||||+..+|++|+|||||++||+.+
T Consensus 63 ----------~~~~--------~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 63 ----------HYIV--------SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp ----------HHHH--------HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred ----------HHHH--------HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 0000 01112344444433 34459999999999999999999999999999999994
Q ss_pred -----------HHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEE
Q 012523 405 -----------DAILQRIIREEF-PGSTVITIAHRVPTITDSDMVM 438 (461)
Q Consensus 405 -----------~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~ 438 (461)
.+.+.+.+++.. ++.|+|++||+++.+..++++.
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 477777765542 3889999999999998877653
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=1.5e-27 Score=217.34 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHH
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 341 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~ 341 (461)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. .. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-~~------ 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-KF------ 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE-TT------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh-hc------
Confidence 689999999999999999999985 556776554332224577899999987 3344441 00 00
Q ss_pred HHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH-----hhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHH
Q 012523 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV-----LLKRNRILILDE--ATASIDSATDAILQRIIRE 414 (461)
Q Consensus 342 ~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa-----l~~~p~iliLDE--pts~LD~~~~~~i~~~l~~ 414 (461)
.+ .+..+++.+.+||||||||++|||| ++.+|++++||| ||++||+...+.+.+.+++
T Consensus 64 -------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 64 -------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 00 0134556677899999999999996 999999999999 9999999999999998876
Q ss_pred HcCCcEEEEEcc---Cchhhhh-cCEEEEEeCCEEEE
Q 012523 415 EFPGSTVITIAH---RVPTITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 415 ~~~~~tvi~itH---~~~~~~~-~d~i~vl~~G~i~~ 447 (461)
.+.|+|+++| +...++. ||| .+|++.+
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4677888886 6677765 777 4556554
No 72
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=4.7e-28 Score=241.67 Aligned_cols=141 Identities=21% Similarity=0.178 Sum_probs=114.7
Q ss_pred EEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEc
Q 012523 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (461)
Q Consensus 235 ~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 314 (461)
+++++| | +++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 556666 5 248999999999999999999999999999999999999999999999865 222222344444442
Q ss_pred cCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEe
Q 012523 315 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394 (461)
Q Consensus 315 Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLD 394 (461)
| |||+||++|||||..+|++++||
T Consensus 224 -------------------------------------------g-------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 -------------------------------------------G-------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp -------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred -------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCC-cEEEEEccCchhhhhcCEEEEEeCCEE
Q 012523 395 EATASIDSATDAILQRIIREEFPG-STVITIAHRVPTITDSDMVMVLSYGSF 445 (461)
Q Consensus 395 Epts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~~~~~~~~d~i~vl~~G~i 445 (461)
|||+. .+.+.++....+ .|+++++|+++..+.|||+++|++|+-
T Consensus 248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99982 244556555444 489999999998888999999999863
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.92 E-value=5.1e-29 Score=234.49 Aligned_cols=168 Identities=12% Similarity=0.055 Sum_probs=115.9
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH-HHHhhcceEEccCCccccccH--H
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKLSIIPQEPTLFRGSV--R 325 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~ti--~ 325 (461)
.|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...+..++|++|++.+|...+ .
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 699999999999999999999999999999999999 5 99999 877654322 234678999999988775321 2
Q ss_pred hhcC---CCCC---CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH-----HHHhhcCCCEEEEe
Q 012523 326 TNLD---PLGM---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL-----GRVLLKRNRILILD 394 (461)
Q Consensus 326 ~Nl~---~~~~---~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l-----ARal~~~p~iliLD 394 (461)
+++. +... ..++++.++++... ...++ .+|||||+||+++ ||+++.+|++++||
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld 152 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLL 152 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH
Confidence 2221 1111 12344444444321 11222 5789999999999 89999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeC
Q 012523 395 EATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 395 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
|||+++|.+++..+.+.+....+++| ++| +..||.|+++++
T Consensus 153 e~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 153 SRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999998887655555 566 456777777664
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=5.9e-28 Score=246.56 Aligned_cols=173 Identities=16% Similarity=0.115 Sum_probs=134.4
Q ss_pred ccccceeEEeeCCc--------------------EEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHh
Q 012523 248 LVLKGITCTFKEGT--------------------RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge--------------------~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r 307 (461)
.+|+++|+++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997653 1
Q ss_pred hcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChh--HHHHHHHHHHhh
Q 012523 308 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG--QRQLFCLGRVLL 385 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG--q~Qrl~lARal~ 385 (461)
.++++|++.....|+.||+.+.. .+.++.+.++..++.+ ++..+ . +|+| |+||++||||+.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHHHH
Confidence 27899997544669999986532 1234556666665432 12221 2 8999 999999999999
Q ss_pred c----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc----------CCcEEEEEccCchh--hhh-cCEEE-EEe
Q 012523 386 K----------RNRILILDEATASIDSATDAILQRIIREEF----------PGSTVITIAHRVPT--ITD-SDMVM-VLS 441 (461)
Q Consensus 386 ~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~----------~~~tvi~itH~~~~--~~~-~d~i~-vl~ 441 (461)
+ +|++++|||||++||+.+++.+.+.+++.. ...++++.||.++. ++. ||+|. .+.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999888888887652 13578888999876 665 78874 444
Q ss_pred CCE
Q 012523 442 YGS 444 (461)
Q Consensus 442 ~G~ 444 (461)
+|+
T Consensus 253 eg~ 255 (413)
T 1tq4_A 253 IYK 255 (413)
T ss_dssp GGG
T ss_pred cch
Confidence 443
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=2.5e-27 Score=244.54 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=149.0
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCE---eCCCCC-----
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMG----- 302 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~---~i~~~~----- 302 (461)
+.++++|+++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+++|++|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 45889999999953 34599999 999999999999999999999999999999999999999998 554321
Q ss_pred HHHHhhcceEEccC-Cccc-cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 012523 303 LKDLRTKLSIIPQE-PTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (461)
Q Consensus 303 ~~~~r~~i~~v~Q~-~~lf-~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~l 380 (461)
...+++.++|++|+ ..++ ..|+.+|+.+. .+... .. ...... +-+...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~---~~---------~~~v~~-~ld~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFR---DR---------GQHVLL-IMDSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHH---TT---------TCEEEE-EEECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHH---hC---------CCCHHH-HHHhHHHHHHHH-HHHHH
Confidence 34578889999995 3333 45788887531 11111 00 000011 113356799999 99999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-----Cc-----EEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-----GS-----TVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 381 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
| +.+|++ |++||+.+...+.+.+++..+ ++ |++++||+++ ...||++++|.+|+|+.++.
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 889988 999999999999999988644 54 9999999999 66799999999999999876
Q ss_pred h
Q 012523 451 N 451 (461)
Q Consensus 451 ~ 451 (461)
.
T Consensus 339 ~ 339 (438)
T 2dpy_A 339 L 339 (438)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.90 E-value=1.1e-25 Score=218.33 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=95.6
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc-cHHhhcCCCCCCCHHHHH
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIW 340 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~ 340 (461)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++.....++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 2346789999999988865 999999865432212212
Q ss_pred HHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcE
Q 012523 341 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGST 420 (461)
Q Consensus 341 ~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 420 (461)
+.+......++.+.++ ..|||||+||+++|||++. +++|||||++||+.. ..+++.+.+ ..+
T Consensus 81 ~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TSE
T ss_pred HHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cCc
Confidence 2222222233333332 3589999999999999875 999999999999876 334444433 389
Q ss_pred EEEEccCchhhh
Q 012523 421 VITIAHRVPTIT 432 (461)
Q Consensus 421 vi~itH~~~~~~ 432 (461)
+|+|.|+.+.+.
T Consensus 143 vI~Vi~K~D~lt 154 (270)
T 3sop_A 143 IIPVIAKADTMT 154 (270)
T ss_dssp EEEEETTGGGSC
T ss_pred EEEEEeccccCC
Confidence 999999887653
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=3.6e-26 Score=225.12 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=129.9
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH----HHH--hhcceEEccCCc-ccc-
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL--RTKLSIIPQEPT-LFR- 321 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-lf~- 321 (461)
++++||++++|++++++|||||||||+++.|+|+++|++|+|.++|.|+..... ..+ |..++|++|++. +++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 346788899999999999999999999999999999999999999988765421 233 457999999987 665
Q ss_pred ccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCC
Q 012523 322 GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATA 398 (461)
Q Consensus 322 ~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~--iliLDEpts 398 (461)
.|+++|+.+.. ...+. ..++.+++ .........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCCC-----------SSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCCC-----------CcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 48999985311 00000 01111111 111111123478 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEcc---------Cchhhhh-cCEEEEEeCCEEEEccchhhHHHh
Q 012523 399 SIDSATDAILQRIIREEFPGSTVITIAH---------RVPTITD-SDMVMVLSYGSFSFNNVNFCVQRI 457 (461)
Q Consensus 399 ~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~~~~~~~-~d~i~vl~~G~i~~~~~~~~~~~~ 457 (461)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+++-..|-.+|+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~ 296 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAF 296 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHH
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHH
Confidence 99987642 22222 23789999999 3334433 689999999986654334544444
No 78
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=4e-26 Score=212.74 Aligned_cols=168 Identities=14% Similarity=0.076 Sum_probs=110.6
Q ss_pred CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc-cH
Q 012523 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV 324 (461)
Q Consensus 246 ~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti 324 (461)
..++++| .+|++||+++|+||||||||||+++|+|+++. +.+++.....-.....++.++|++|++.+|.. |+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 3468888 79999999999999999999999999999963 44443221111112235679999999988754 66
Q ss_pred HhhcCCC----C-----CCCHHHHHHH----------HHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh
Q 012523 325 RTNLDPL----G-----MYSDNEIWEA----------MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (461)
Q Consensus 325 ~~Nl~~~----~-----~~~~~~~~~~----------~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~ 385 (461)
.+|+... . ..+.+++.+. ++..++.+..+..|. .|| |++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~ 139 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFL 139 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEE
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEE
Confidence 7766311 1 1123333332 233344444444442 345 999
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEe
Q 012523 386 KRNRILILDEATASI----DSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLS 441 (461)
Q Consensus 386 ~~p~iliLDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~ 441 (461)
.+|++++|||||+++ |+...+.+.+.+++.. .+.|+|++||+++.+.. ||||++|.
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999998 6778888999888764 37899999999998875 99999984
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.88 E-value=4.4e-25 Score=221.53 Aligned_cols=186 Identities=17% Similarity=0.171 Sum_probs=132.4
Q ss_pred cceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC----HHHH--hhcceEEccCCc-ccc-c
Q 012523 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LFR-G 322 (461)
Q Consensus 251 ~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 322 (461)
+++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578889999999999999999999999999999999999999998876532 1223 457999999987 664 4
Q ss_pred cHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCC
Q 012523 323 SVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATAS 399 (461)
Q Consensus 323 ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~--iliLDEpts~ 399 (461)
|+++|+.+.. ...+. ..++.+++ .........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCC-----------SSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCC-----------ChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 8899985321 00000 01111221 111111123478 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEccC---------chhhhh-cCEEEEEeCCEEEEccchhhHHHhH
Q 012523 400 IDSATDAILQRIIREEFPGSTVITIAHR---------VPTITD-SDMVMVLSYGSFSFNNVNFCVQRII 458 (461)
Q Consensus 400 LD~~~~~~i~~~l~~~~~~~tvi~itH~---------~~~~~~-~d~i~vl~~G~i~~~~~~~~~~~~~ 458 (461)
+|+.+.. +.+.+ ..+.|+|++||. ++.... .+.|..+..|+.+++--.|-.+|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~ 354 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFV 354 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHH
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHH
Confidence 9987653 22222 237899999993 334433 6899999999877655555555543
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=1.6e-25 Score=221.49 Aligned_cols=177 Identities=14% Similarity=0.168 Sum_probs=126.6
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEE-----------------------eeCCcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCT-----------------------FKEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~-----------------------i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
.+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 477777765 899999999999999999999999999999
Q ss_pred CceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCCccc-ccc
Q 012523 287 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLD-SSV 363 (461)
Q Consensus 287 ~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~ 363 (461)
..|. .++++|+|++++++.|+++|+.+.. ...+..- ...+.+.+..+..|.. ..
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d-----~~~~~~~L~~l~~~~~~~~- 173 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYN-----RRALMRFVTSVKSGSDYAC- 173 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBC-----HHHHHHHHHHHHTTCSCEE-
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHH-----HHHHHHHHHHhCCCcccCC-
Confidence 7653 4699999999999889999986432 1111100 0112223333333332 22
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhh--hcCEEEEEe
Q 012523 364 SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT--DSDMVMVLS 441 (461)
Q Consensus 364 ~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~d~i~vl~ 441 (461)
...|||||+||+++|||++.+|++||||||++.+|+.. ..+.+.. + .+|+|+|+.+... ..+|.+.+.
T Consensus 174 ---~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 174 ---APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp ---EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred ---cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 24799999999999999999999999999999998522 1122222 3 4577788776543 256665554
Q ss_pred CC
Q 012523 442 YG 443 (461)
Q Consensus 442 ~G 443 (461)
+|
T Consensus 244 d~ 245 (312)
T 3aez_A 244 TT 245 (312)
T ss_dssp TT
T ss_pred hc
Confidence 44
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.87 E-value=7.3e-22 Score=198.43 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEE
Q 012523 369 NWSVGQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~v 439 (461)
.|||||+||++|||+|+ .+|++|+||||||+||+.....+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998763 79999999 444 8999999
Q ss_pred EeCCEEEEccch
Q 012523 440 LSYGSFSFNNVN 451 (461)
Q Consensus 440 l~~G~i~~~~~~ 451 (461)
|++|++++.|..
T Consensus 340 l~~G~i~~~g~~ 351 (359)
T 2o5v_A 340 AQAGRFTPVADE 351 (359)
T ss_dssp EETTEEEECCCT
T ss_pred EECCEEEecCCH
Confidence 999999998873
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=2.5e-23 Score=208.58 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=139.5
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC-------CH
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-------GL 303 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~-------~~ 303 (461)
..++.+++++.|+. +..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+. ..
T Consensus 44 ~~i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 35888999999963 34599999 99999999999999999999999999999999999999998652111 11
Q ss_pred HHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHH
Q 012523 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 304 ~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~-~~~~g~~lSgGq~Qrl~lAR 382 (461)
..+++.+.+++|.. ....+++..+.....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~---------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD---------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTT---------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCC---------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 11223334443321 1112344444444444444332 222211 124457899999 999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc---CCc-----EEEEEccCchhhhhcCEEEEEeCCEEEEccc
Q 012523 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF---PGS-----TVITIAHRVPTITDSDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 383 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~~~~~~~~d~i~vl~~G~i~~~~~ 450 (461)
+.+|++ |+|+|+.....+.+.+++.. ++. |++++||+++ -..||++++|.+|+|+.++.
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~ 249 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRE 249 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHH
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCC
Confidence 688887 99999999999999998864 366 8999999998 45599999999999998776
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.86 E-value=6.6e-24 Score=224.72 Aligned_cols=167 Identities=19% Similarity=0.133 Sum_probs=119.8
Q ss_pred CccccceeE-EeeCCcEEEEEcCCCCCHHHHHHH--HccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcccccc
Q 012523 247 PLVLKGITC-TFKEGTRVGVVGRTGSGKTTLISA--LFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS 323 (461)
Q Consensus 247 ~~~l~~i~l-~i~~Ge~v~ivG~sGsGKSTll~l--l~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~t 323 (461)
.++|+++++ .+++||+++|+||||||||||+++ +.|+++|++|.|+++|.+. ..+....++.+|+++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 459999999 999999999999999999999999 6899999999999999873 222334567899999987531
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC----
Q 012523 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS---- 399 (461)
Q Consensus 324 i~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~---- 399 (461)
+|+.......+++..++++..++.+..++.+ ..|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASPDPEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCCCSSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred --CcEEEEecCcccchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 1221100000001111222333333333332 234665 5789999999984
Q ss_pred -CCHHHHHHHHHHHHHHc-CCcEEEEEccCchhh---------hh-cCEEEEEeCC
Q 012523 400 -IDSATDAILQRIIREEF-PGSTVITIAHRVPTI---------TD-SDMVMVLSYG 443 (461)
Q Consensus 400 -LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~---------~~-~d~i~vl~~G 443 (461)
+|+...+.+.+.++... .++|+|++||+++.+ +. ||+|++|++|
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 58888889999888754 389999999999874 45 9999999983
No 84
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.85 E-value=4.7e-24 Score=195.98 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=119.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHH
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI 339 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~ 339 (461)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++. .+++++||++|+. .++ ++|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999998886543 4688999999986 333 344432110000
Q ss_pred HHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH-HHHH---HhhcCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 012523 340 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF-CLGR---VLLKRNRILILDE--ATASIDSATDAILQRIIR 413 (461)
Q Consensus 340 ~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl-~lAR---al~~~p~iliLDE--pts~LD~~~~~~i~~~l~ 413 (461)
+...+..+++.+..+|+|||+++ ++++ |++.+|++||||| |+..+|+...+.+.+.++
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 01123467888889999999998 5565 6899999999999 898899988777777776
Q ss_pred HHcCCcEEE----EEccCchhhhhcCEEEEEeCCEEEEc
Q 012523 414 EEFPGSTVI----TIAHRVPTITDSDMVMVLSYGSFSFN 448 (461)
Q Consensus 414 ~~~~~~tvi----~itH~~~~~~~~d~i~vl~~G~i~~~ 448 (461)
+ .+++| .|+||.+ ...+|+|..+++|+|++-
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 4 34455 3449875 456788888889998863
No 85
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.85 E-value=5.1e-24 Score=192.50 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=88.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEeCCCCC---HHHHh-hcce----EEccCCccccccHHhhcC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMG---LKDLR-TKLS----IIPQEPTLFRGSVRTNLD 329 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~~Nl~ 329 (461)
++++|+|+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 56787 4788 899999887 222
Q ss_pred CCCCCCHHHHHHHHHHccHHHHHHh-CCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 330 PLGMYSDNEIWEAMEKCQLKATISR-LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~i~~-l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
.+++. .+++++++.. +| |+||.++|+ |||||+|||+||||++++|++.
T Consensus 77 -----~~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -----VSEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -----CCHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -----CChhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11221 7799999999 99 999999995 9999999999999999999873
No 86
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=1.7e-22 Score=195.01 Aligned_cols=141 Identities=20% Similarity=0.178 Sum_probs=105.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC-ceEEEECCEeCCCCCHHHHhhcce
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLS 311 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~-~G~i~i~g~~i~~~~~~~~r~~i~ 311 (461)
++++|++|. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..++
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKS 73 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSS
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcce
Confidence 345566532 3899999 9999999999999999999999999999998 999999997653211 11122
Q ss_pred EEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 012523 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (461)
Q Consensus 312 ~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~il 391 (461)
+++|+ +.|++ ...| |++|||||..+|+++
T Consensus 74 ~v~q~---------------------------------------~~gl~------~~~l------~~~la~aL~~~p~il 102 (261)
T 2eyu_A 74 IVNQR---------------------------------------EVGED------TKSF------ADALRAALREDPDVI 102 (261)
T ss_dssp EEEEE---------------------------------------EBTTT------BSCH------HHHHHHHHHHCCSEE
T ss_pred eeeHH---------------------------------------HhCCC------HHHH------HHHHHHHHhhCCCEE
Confidence 22221 11111 1122 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeC
Q 012523 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 392 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
++|||| |+++...+.+ ....+.++++++|+.+....|||+++|..
T Consensus 103 llDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 103 FVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp EESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred EeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 999999 9888554443 33458899999999987777899877753
No 87
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=1.9e-20 Score=187.43 Aligned_cols=79 Identities=27% Similarity=0.271 Sum_probs=69.3
Q ss_pred CCCCCChhHHH------HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEE
Q 012523 366 EGENWSVGQRQ------LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVM 438 (461)
Q Consensus 366 ~g~~lSgGq~Q------rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~ 438 (461)
....||||||| |+++|||++.+|++|||||||++||+.....+.+.|++.. .++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 34679999999 6788899999999999999999999999999999998853 4679999999988777899999
Q ss_pred EEe--CCE
Q 012523 439 VLS--YGS 444 (461)
Q Consensus 439 vl~--~G~ 444 (461)
+|+ +|.
T Consensus 325 ~l~~~~g~ 332 (339)
T 3qkt_A 325 RISLENGS 332 (339)
T ss_dssp EEEEETTE
T ss_pred EEEecCCc
Confidence 985 454
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.84 E-value=2.8e-21 Score=204.23 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=71.1
Q ss_pred CCC-ChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCCE
Q 012523 368 ENW-SVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGS 444 (461)
Q Consensus 368 ~~l-SgGq~Qrl~lARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~ 444 (461)
..| ||||+||++||||++.+| ++|||||||++||+.+...+.+.|++..+++|||+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999998766899999999999998899999995543
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=4.2e-21 Score=188.34 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=119.6
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce-EEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
++|+++++.+++|+.++|+||||||||||++.|+|...|++| .|.+.+.+ .+...+++++..+.|...+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 379999999999999999999999999999999999999878 77654433 3556666666555554322 1222
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH-HHHHHHHHHhhcCCCEEEEeCCCC---C---
Q 012523 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ-RQLFCLGRVLLKRNRILILDEATA---S--- 399 (461)
Q Consensus 327 Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq-~Qrl~lARal~~~p~iliLDEpts---~--- 399 (461)
++... ..++++..++.+ ..+...+-+ +.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 33210 011222222211 122222222 223335689998 67777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHc--CCcEEEEEccCc--h--------------------hhh-hcCEEEEEeCCEE
Q 012523 400 IDS-ATDAILQRIIREEF--PGSTVITIAHRV--P--------------------TIT-DSDMVMVLSYGSF 445 (461)
Q Consensus 400 LD~-~~~~~i~~~l~~~~--~~~tvi~itH~~--~--------------------~~~-~~d~i~vl~~G~i 445 (461)
+|. .....+.+.|++.. .++|||++||.. + .++ .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 44567777777653 279999999995 4 555 4999999999985
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.82 E-value=3.9e-21 Score=216.05 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=120.9
Q ss_pred ccEEEEe-----EEEEeCCCCCccccceeEEeeC-------CcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeC
Q 012523 231 GRIELED-----LKVRYRPNTPLVLKGITCTFKE-------GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (461)
Q Consensus 231 ~~i~~~~-----v~~~y~~~~~~~l~~i~l~i~~-------Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i 298 (461)
+.|+++| |++.|+++ ..+++|++|++++ |++++|+|||||||||++|.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 3599999 99998433 4599999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhhcce-EEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHH
Q 012523 299 CSMGLKDLRTKLS-IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (461)
Q Consensus 299 ~~~~~~~~r~~i~-~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qr 377 (461)
..++| ||||++. ..|+.+|+.. . .++.+.+. .| ..++|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~--r------------ig~~d~~~---~~--------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFT--R------------LGASDRIM---SG--------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEE--E------------CC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHH--H------------cCCHHHHh---hc--------hhhhHHHHHH-
Confidence 24566 9999873 4577777731 0 11111111 11 1356777665
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHc-C-CcEEEEEccCchhhhh-cCEEEEEeCCEEE
Q 012523 378 FCLGRVLLKRNRILILDEATASIDSAT-DAILQRIIREEF-P-GSTVITIAHRVPTITD-SDMVMVLSYGSFS 446 (461)
Q Consensus 378 l~lARal~~~p~iliLDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~ 446 (461)
+++|++++.+|+++||||||+|+|+.. ...+++.++... + ++|+|++||+++.+.. ||++.++ +|++.
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 999999999999999999999999977 455666666643 3 7899999999998876 8998886 58876
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=2.5e-21 Score=205.02 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=113.3
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCC
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 333 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~ 333 (461)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. .++.++....+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 3489999999999999999999999999998874 43 01445566552 23333332111
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH-----HHHHH
Q 012523 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA-----TDAIL 408 (461)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~-----~~~~i 408 (461)
.+.++ +.. .|+..........|||||+||+++||++..+|++||+| ||++||.. ..+.+
T Consensus 333 ~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i 396 (525)
T 1tf7_A 333 MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV 396 (525)
T ss_dssp CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH
T ss_pred CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH
Confidence 11111 111 12222333445679999999999999999999999999 99999998 88888
Q ss_pred HHHHHHHc-CCcEEEEEccCc----------hhhhh-cCEEEEEeCCE
Q 012523 409 QRIIREEF-PGSTVITIAHRV----------PTITD-SDMVMVLSYGS 444 (461)
Q Consensus 409 ~~~l~~~~-~~~tvi~itH~~----------~~~~~-~d~i~vl~~G~ 444 (461)
.+.++... .+.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 397 ~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 397 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 88877653 488999999998 66665 99999999987
No 92
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.82 E-value=8.5e-24 Score=214.21 Aligned_cols=175 Identities=18% Similarity=0.156 Sum_probs=140.7
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC-ceEEEECCEeCCCCCHHHHhhcceEEcc-----CCcccc
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQ-----EPTLFR 321 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~ 321 (461)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .++..+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3577765 8999999999999999999999999999998 899988776653 2 35678999999 888999
Q ss_pred ccHHhhcCCCCCC-------CHHHHHHHHHHccH-----------------HHHH------------HhCCCcccccccC
Q 012523 322 GSVRTNLDPLGMY-------SDNEIWEAMEKCQL-----------------KATI------------SRLPMLLDSSVSD 365 (461)
Q Consensus 322 ~ti~~Nl~~~~~~-------~~~~~~~~~~~~~l-----------------~~~i------------~~l~~gl~t~~~~ 365 (461)
+++++|+...++. +.+.++.+++.+.. +..+ ..++.++++.+++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999764433 55666666665432 1221 1245688999999
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHcCCcEEEEEccCchh
Q 012523 366 EGENWSVGQRQLFCLGRVLLKRNRI--LILDEATASIDSA----T-----DAILQRIIREEFPGSTVITIAHRVPT 430 (461)
Q Consensus 366 ~g~~lSgGq~Qrl~lARal~~~p~i--liLDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~~~~ 430 (461)
++..+|+| ||++++|+++.+|++ +|+||+|+++|.. + +...+++++...+++|.+.++||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 88889999 899999999999999 9999999999965 2 34577777777789999999999874
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.81 E-value=6.7e-22 Score=188.25 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=109.0
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc--cCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF--RLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~--gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
+++++++..++.-+ .++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++.+... .....++.+
T Consensus 7 ~~~~~i~tg~~~lD-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 7 QPVRRVKSGIPGFD-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp -CCCEECCSCTTTG-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred cccceeecCCHhHH-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 45556665553221 13433 68999999999999999999999999 7756777888887754211 122334668
Q ss_pred eEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 311 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 311 ~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
++++|+...+.. ++.++..........+..... ...+-++.+....+..-..+|+
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~p~ 137 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLE------------------------DRFNVDNFLRYIYRVVKAINAK 137 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTCS
T ss_pred CCChHHHhhcCCEEEEEccccccccccccceecc------------------------CcccHHHHHHHHHHHHHhhCCC
Confidence 888887644322 333332210000000000000 0122344444444444457999
Q ss_pred EEEEeCCCCCCC-----HHHHHHHHHHHHHHc-CCcEEEEEccCchhh----------hhc-CEEEEEe
Q 012523 390 ILILDEATASID-----SATDAILQRIIREEF-PGSTVITIAHRVPTI----------TDS-DMVMVLS 441 (461)
Q Consensus 390 iliLDEpts~LD-----~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~----------~~~-d~i~vl~ 441 (461)
++++||||+++| +...+.+.+.++... .++|+|++||+++.. ..| |+|++|+
T Consensus 138 ~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 138 RLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp EEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred EEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999999997 555666777776653 489999999998876 457 9999995
No 94
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=1.7e-20 Score=207.63 Aligned_cols=163 Identities=20% Similarity=0.218 Sum_probs=115.4
Q ss_pred HHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHh
Q 012523 275 TLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISR 354 (461)
Q Consensus 275 Tll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~ 354 (461)
|+..+.-+.+.|..|+|.++|.++.++....+.+.++++.+-. -+..++. .-....+..+. ..+.+..
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~------~~~~~~~~~~~--~~~~L~~ 450 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTERERE------IVGELLKEIEK--RLEFLVD 450 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTT------THHHHHHHHHH--HHHHHHT
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHH------HHHhhHHHHHH--HHHHHHH
Confidence 4455666788999999999999986544333344444322210 0111110 00111111111 1233444
Q ss_pred CCCccccc-ccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchh
Q 012523 355 LPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPT 430 (461)
Q Consensus 355 l~~gl~t~-~~~~g~~lSgGq~Qrl~lARal~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~ 430 (461)
+ |++.. .+....+|||||+||++|||||.++|+ +|||||||++||+...+.+.+.|+++.+ ++|+|+|||+++.
T Consensus 451 v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~ 528 (916)
T 3pih_A 451 V--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528 (916)
T ss_dssp T--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH
T ss_pred c--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3 44332 455567899999999999999999887 9999999999999999999999998654 7899999999999
Q ss_pred hhhcCEEEEE------eCCEEEEccch
Q 012523 431 ITDSDMVMVL------SYGSFSFNNVN 451 (461)
Q Consensus 431 ~~~~d~i~vl------~~G~i~~~~~~ 451 (461)
+..||+|++| ++|+++++|..
T Consensus 529 ~~~aD~ii~lgpgag~~~G~iv~~G~~ 555 (916)
T 3pih_A 529 IRNADHIIDIGPGGGTNGGRVVFQGTV 555 (916)
T ss_dssp HHTCSEEEEEESSSGGGCSEEEEEECH
T ss_pred HHhCCEEEEEcCCcccCCCEEEEeech
Confidence 9999999999 99999998874
No 95
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.80 E-value=7.8e-20 Score=188.83 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhhhcCEEEEEe
Q 012523 369 NWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDMVMVLS 441 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~vl~ 441 (461)
.||||||||++||++++ .+|+++||||||++||+.....+.+.+++... +.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 689999999998888899999986
No 96
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.80 E-value=2.4e-23 Score=192.74 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=119.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCC-------------CCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccH
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSV 324 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~-------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti 324 (461)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78887 589888888888888876 79999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH-HhhcCCCEEEEeCCCCCCCHH
Q 012523 325 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR-VLLKRNRILILDEATASIDSA 403 (461)
Q Consensus 325 ~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR-al~~~p~iliLDEpts~LD~~ 403 (461)
.+|+ ++ .++++++++++...... .+..|+|+++.... ++ .|| +++.+|++++|||+|+++|.+
T Consensus 77 ~~n~-~g--~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YG--TSKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EE--EEHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CC--CCHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 9998 32 25677877776532110 01123455544321 12 567 899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeC
Q 012523 404 TDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (461)
Q Consensus 404 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~ 442 (461)
+++.+.+.|....++ +.++| +. ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999988775443 35677 34 77999998874
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.79 E-value=4.3e-20 Score=173.48 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=100.9
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-------CceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhc
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEP-------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl 328 (461)
-+++||+++|+||||||||||+++|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 455888887542 12 2357778888877777899998
Q ss_pred CCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh-------hcCCCEEEEeCCCCCCC
Q 012523 329 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL-------LKRNRILILDEATASID 401 (461)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal-------~~~p~iliLDEpts~LD 401 (461)
.+....+..+. ++.+..++++ ..+|+++++||||+.+|
T Consensus 95 ~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNHQ-----------------------------------MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHHH-----------------------------------HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHHH-----------------------------------HHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 65433222211 1112222222 34899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHc--CCcEEEEEccC----chhhhh-cCEEEEEeCCE
Q 012523 402 SA-------TD-----AILQRIIREEF--PGSTVITIAHR----VPTITD-SDMVMVLSYGS 444 (461)
Q Consensus 402 ~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~----~~~~~~-~d~i~vl~~G~ 444 (461)
++ .+ ..+.+.+.+.. .++|+|++||. ...+.. ||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 84 21 24555555532 37999999994 444766 89999998764
No 98
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=1.7e-21 Score=186.19 Aligned_cols=159 Identities=12% Similarity=0.130 Sum_probs=98.8
Q ss_pred CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHH
Q 012523 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (461)
Q Consensus 246 ~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 325 (461)
+..+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.+++++|++.....|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 345999999999999999999999999999999999976 545443 357789999999743345888
Q ss_pred hhcCCC-C--CCC------HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 012523 326 TNLDPL-G--MYS------DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (461)
Q Consensus 326 ~Nl~~~-~--~~~------~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEp 396 (461)
+|+.+. . ..+ .+++.+.++ .+..+.+.. ...||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~---------~l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLK---------NIVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHH---------HHHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHH---------HHHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCc
Confidence 876421 1 111 111222222 121223333 35699999999988 688999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEEccCch-hhhh-cCEEEEEeCCE
Q 012523 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVP-TITD-SDMVMVLSYGS 444 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~-~~~~-~d~i~vl~~G~ 444 (461)
....|.. + .+. .+.|++++||... ..+. ++++ ++|+
T Consensus 143 ~~~~~~~----l----~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 143 LVFYSQE----I----RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTTSHH----H----HTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred cccccHH----H----HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 8887754 2 222 3789999999743 3343 3434 6675
No 99
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=3.1e-19 Score=157.13 Aligned_cols=81 Identities=26% Similarity=0.242 Sum_probs=71.4
Q ss_pred CCCCCCChhHHHHHHHH------HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEE
Q 012523 365 DEGENWSVGQRQLFCLG------RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMV 437 (461)
Q Consensus 365 ~~g~~lSgGq~Qrl~lA------Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i 437 (461)
....+||||||||++|| ||++.+|++++|||||++||+.+.+.+.+.+++.. .++|+|++||++.....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 45678999999999876 99999999999999999999999999999998864 478999999999766679999
Q ss_pred EEE--eCCEE
Q 012523 438 MVL--SYGSF 445 (461)
Q Consensus 438 ~vl--~~G~i 445 (461)
++| ++|.-
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 55643
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.79 E-value=1.6e-20 Score=188.64 Aligned_cols=161 Identities=20% Similarity=0.134 Sum_probs=110.7
Q ss_pred cccce-eEEeeCCcEEEEEcCCCCCHHHHHHHHccCC--CCCc----eE-EEECCEeCCCCCHHHHhhcceEEccCCccc
Q 012523 249 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPEN----GR-ILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (461)
Q Consensus 249 ~l~~i-~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~--~~~~----G~-i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 320 (461)
.|+.+ ++.+++|++++|+||||||||||++.+++.+ +|++ |. |++++.+. . .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~----~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F----RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C----CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C----CHHHHHHHHHHcCCC
Confidence 56665 5899999999999999999999999999998 6766 68 89998764 1 245788899999888
Q ss_pred cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh-------cCCCEEEE
Q 012523 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-------KRNRILIL 393 (461)
Q Consensus 321 ~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~-------~~p~iliL 393 (461)
..++.+|+.+....+ |.+|+|++.++++++ .+|+++|+
T Consensus 193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 889999987533222 234555555555555 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHc--CCcEEEEEccCchhhhh-cCEEEEEeCCEEEEccc
Q 012523 394 DEATASIDSAT------------DAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 394 DEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
||||+.+|++. ...+...|.+.. .++|+|+++|....... ++...+...|++++.++
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 99999999862 234444444432 37899999998765442 33455666777665554
No 101
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.78 E-value=2.4e-19 Score=199.28 Aligned_cols=161 Identities=13% Similarity=0.067 Sum_probs=113.3
Q ss_pred ccEEEEeEEEEeCC---CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHH--------ccCCCCCceEEEECCEeCC
Q 012523 231 GRIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--------FRLVEPENGRILIDGLDIC 299 (461)
Q Consensus 231 ~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll--------~gl~~~~~G~i~i~g~~i~ 299 (461)
+.+++++...-+-. +...+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 35888876543311 234689999999999999999999999999999999 56555543321
Q ss_pred CCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 012523 300 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (461)
Q Consensus 300 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~ 379 (461)
++. .+.+. ...++.+.+ ...+|+|++++..
T Consensus 702 ----------~~~------------~d~i~--------------~~ig~~d~l--------------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VSI------------VDCIL--------------ARVGAGDSQ--------------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EEC------------CSEEE--------------EECC-----------------------CHHHHHHHH
T ss_pred ----------chH------------HHHHH--------------HhcCchhhH--------------HHhHhhhHHHHHH
Confidence 000 01110 001111111 1246888888888
Q ss_pred HHHHh--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEEEcc
Q 012523 380 LGRVL--LKRNRILILDEATASIDSATDAIL-QRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFSFNN 449 (461)
Q Consensus 380 lARal--~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~~ 449 (461)
+|+++ +.+|+++||||||+|+|+.....+ ...++... .++|+|++||+.+....||++..+++|++...+
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~ 806 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALT 806 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEE
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEe
Confidence 88888 999999999999999999877666 44444432 379999999999888889999999999997644
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.78 E-value=3.9e-20 Score=202.20 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=111.6
Q ss_pred ccEEEEeEEEEeCC---CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-CCceEEEECCEeCCCCCHHHH
Q 012523 231 GRIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGLKDL 306 (461)
Q Consensus 231 ~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-~~~G~i~i~g~~i~~~~~~~~ 306 (461)
+.+++++. ++|- ++..+++|+||+ |++++|+|||||||||++|+++|+.. |+.|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------hh
Confidence 45888887 4443 335689999999 99999999999999999999999874 6777642 1 11
Q ss_pred hhcceEEccCCcccc-ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh-
Q 012523 307 RTKLSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL- 384 (461)
Q Consensus 307 r~~i~~v~Q~~~lf~-~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal- 384 (461)
+..+++++| +|. .++.||+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 456888877 443 255555421 2589999999999999
Q ss_pred -hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHcCCcEEEEEccCchhhhhc
Q 012523 385 -LKRNRILILDEA---TASIDSATD-AILQRIIREEFPGSTVITIAHRVPTITDS 434 (461)
Q Consensus 385 -~~~p~iliLDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 434 (461)
+.+|+++||||| |+++|+.+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 578888876 478999999998876554
No 103
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=8.5e-20 Score=200.54 Aligned_cols=173 Identities=16% Similarity=0.202 Sum_probs=125.8
Q ss_pred CCCCCHHHHHHHHccC---------CCCCceEEEECCEeCCC---CCHHHHhhcceEEccCCccccccHHhhcCCCCCCC
Q 012523 268 RTGSGKTTLISALFRL---------VEPENGRILIDGLDICS---MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 335 (461)
Q Consensus 268 ~sGsGKSTll~ll~gl---------~~~~~G~i~i~g~~i~~---~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~ 335 (461)
.+..||+++.+.+... |.|..|+|.++|.++.+ ++..++...+.-++|++.... + +...+.. .
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--~ 344 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--E 344 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS--S
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch--h
Confidence 4556899998887763 45578999999999987 555555555555565554322 2 1222211 1
Q ss_pred HHHHH-----HHHHHccHHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHH
Q 012523 336 DNEIW-----EAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAI 407 (461)
Q Consensus 336 ~~~~~-----~~~~~~~l~~~i~~l~~gl~t~-~~~~g~~lSgGq~Qrl~lARal~~~p--~iliLDEpts~LD~~~~~~ 407 (461)
..++. ++.++. +.+..+ |++.. ++....+||||||||++||++|..+| ++|||||||++||+...+.
T Consensus 345 ~~~i~~~i~~ei~~rl---~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 345 QAIALQRMAADLVKRL---DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred hHHHHHHHHHHHHHHH---HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 11111 222222 134443 44432 45666799999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHc-CCcEEEEEccCchhhhhcCEEEEE------eCCEEEEccc
Q 012523 408 LQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGSFSFNNV 450 (461)
Q Consensus 408 i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl------~~G~i~~~~~ 450 (461)
+.+.++.+. .+.|+|+|+||++.++.||+|++| ++|+++..|.
T Consensus 420 L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~ 469 (842)
T 2vf7_A 420 LLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGP 469 (842)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecC
Confidence 999998864 489999999999999889999999 7999998876
No 104
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.78 E-value=2.6e-21 Score=195.70 Aligned_cols=147 Identities=15% Similarity=0.193 Sum_probs=97.4
Q ss_pred cccceeEEeeC--CcEEEEEcCCCCCHHHHHHHHccCCCCCc----eEEEE----CCEeCCCCCHHHHhhcceEEccCCc
Q 012523 249 VLKGITCTFKE--GTRVGVVGRTGSGKTTLISALFRLVEPEN----GRILI----DGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 249 ~l~~i~l~i~~--Ge~v~ivG~sGsGKSTll~ll~gl~~~~~----G~i~i----~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
..+.+++++++ |++++|+||||||||||+++|+|+++|++ |++.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99887 35555 4555556 56999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCCc--ccc--------cccCCCCCCChhHHHHHHHHHHh---
Q 012523 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPML--LDS--------SVSDEGENWSVGQRQLFCLGRVL--- 384 (461)
Q Consensus 319 lf~~ti~~Nl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g--l~t--------~~~~~g~~lSgGq~Qrl~lARal--- 384 (461)
+|.+|+++|+.+.. +..+..........+....+..++.+ ++. +..++|.++|+||+||++++|++
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999997643 22233333333333323333333222 222 22245566777777777777777
Q ss_pred hc--CCCEEEEeCCC
Q 012523 385 LK--RNRILILDEAT 397 (461)
Q Consensus 385 ~~--~p~iliLDEpt 397 (461)
++ +++++++|||+
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 65 67777777775
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.77 E-value=2.7e-20 Score=172.36 Aligned_cols=169 Identities=14% Similarity=0.175 Sum_probs=102.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC-----CCCceEEEE-------CCEeCCC
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILI-------DGLDICS 300 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~-----~~~~G~i~i-------~g~~i~~ 300 (461)
|+++|++|.|+ . +++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+ ++..+.+
T Consensus 4 l~~~~~~~~~~--~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMS--A-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEE--E-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheee--c-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 78999999995 2 47888 899999999999999999999999999998 888888764 2232221
Q ss_pred CC-----------HHHHhhcceEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCC
Q 012523 301 MG-----------LKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 368 (461)
Q Consensus 301 ~~-----------~~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~ 368 (461)
.+ .+.+++.++++.|+...+++ .+..++.......++++.+.++. ..+|. -.++...-
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~---~~v~nK~D 148 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAV---LVLLTKAD 148 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCE---EEEEECGG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCe---EEEEeccc
Confidence 11 12345556666665433333 33333332111111222222211 12221 12344455
Q ss_pred CCChhHHHH-HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 012523 369 NWSVGQRQL-FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF 416 (461)
Q Consensus 369 ~lSgGq~Qr-l~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 416 (461)
.+|+||+|| +..+|+++.+|+.+++|||||++|+.....+.+.|.+..
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 789999999 899999999999999999999999999888988887753
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.77 E-value=8.8e-20 Score=183.28 Aligned_cols=147 Identities=20% Similarity=0.178 Sum_probs=107.3
Q ss_pred EeEEEEeCCCCCccccceeE-------EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCC-ceEEEECCEeCCCCCHHHHh
Q 012523 236 EDLKVRYRPNTPLVLKGITC-------TFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLR 307 (461)
Q Consensus 236 ~~v~~~y~~~~~~~l~~i~l-------~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~-~G~i~i~g~~i~~~~~~~~r 307 (461)
.+++++|.+...+.|+++.+ ...+|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 56777775555567888776 77899999999999999999999999999997 56665443333 222 22
Q ss_pred hcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC
Q 012523 308 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 308 ~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~ 387 (461)
...++++|.+.-.. . .+-.+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~-----~------~~~~~----------------------------------------~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----T------LGFSE----------------------------------------ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----B------SCHHH----------------------------------------HHHHHTTSC
T ss_pred ccccceeeeeeccc-----c------CCHHH----------------------------------------HHHHHhhhC
Confidence 33455665432110 0 00000 999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCC
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G 443 (461)
|+++++|||| |+++.+.+.++ ...|.|+++++|+.+.+..+||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 77775555544 23489999999999999889999988554
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.76 E-value=9.9e-22 Score=182.93 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=104.4
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc---cHHhhcCCC--
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG---SVRTNLDPL-- 331 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~---ti~~Nl~~~-- 331 (461)
.++|+++||+||||||||||+++|+|++.| .++|++|++.+++. |+++|..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 58999999988743 676665322
Q ss_pred C--CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH----HHHHHHHHHhhcCCCEEEEeCCCCC------
Q 012523 332 G--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ----RQLFCLGRVLLKRNRILILDEATAS------ 399 (461)
Q Consensus 332 ~--~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq----~Qrl~lARal~~~p~iliLDEpts~------ 399 (461)
. ....+.+.++++..++.+. +...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 1 1233455555544333221 222345678885 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHH--cCCcEEEEEccCc
Q 012523 400 -IDSATDAILQRIIREE--FPGSTVITIAHRV 428 (461)
Q Consensus 400 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~~ 428 (461)
||+..+..+.+.+.+. .+++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999988888888763 3478999999984
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.76 E-value=1.2e-20 Score=202.58 Aligned_cols=185 Identities=15% Similarity=0.190 Sum_probs=117.3
Q ss_pred cEEEEeEEEEeCCCCCccccce----------eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEEECCEeCCC
Q 012523 232 RIELEDLKVRYRPNTPLVLKGI----------TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS 300 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i----------~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~i~g~~i~~ 300 (461)
.++++|+++.|+....++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999964433455555 366665 999999999999999999999988 79999999998632
Q ss_pred --C-CHHHHhhcceEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 301 --M-GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 301 --~-~~~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
. ....+|+.++|++|++.+++. |+++|+.. +... ..... ..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~-----------~~~~------~~~~~-----------~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK-----------AQNA------IAGEG-----------MGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHH-----------HHHH------HHCSS-----------SCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHH-----------HHHH------hcCCc-----------cccc---hH
Confidence 1 134678899999999988764 89888842 1111 11101 1111 23
Q ss_pred HHHHHHHhhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHc---CCcEEEEEccCchhh--------hh-----c
Q 012523 377 LFCLGRVLLKRNRILILDEA------TASIDSATDAILQRIIREEF---PGSTVITIAHRVPTI--------TD-----S 434 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEp------ts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~~~~~--------~~-----~ 434 (461)
++.++.+...+|+++++||| |++||+..++.+.+.++++. .+.++++++|+++.. +. .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 34445555668999999999 99999999999999998853 256788999997632 11 3
Q ss_pred CEEEEEeCCEEEEccc
Q 012523 435 DMVMVLSYGSFSFNNV 450 (461)
Q Consensus 435 d~i~vl~~G~i~~~~~ 450 (461)
..|.|+.++.+++.|.
T Consensus 216 rtI~VlTK~Dlv~~g~ 231 (608)
T 3szr_A 216 RTIGILTKPDLVDKGT 231 (608)
T ss_dssp SEEEEEECGGGSSSSS
T ss_pred ceEEEecchhhcCccc
Confidence 5689999988877664
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=8.7e-19 Score=193.03 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=80.3
Q ss_pred ccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEE
Q 012523 363 VSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 363 ~~~~g~~lSgGq~Qrl~lARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~v 439 (461)
++....+|||||+||++||++|..+| ++|||||||++||+...+.+.+.|+++. .+.|||+|+||+++++.||+|++
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 577 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID 577 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 45556789999999999999999985 9999999999999999999999998865 48999999999999999999999
Q ss_pred E------eCCEEEEccc
Q 012523 440 L------SYGSFSFNNV 450 (461)
Q Consensus 440 l------~~G~i~~~~~ 450 (461)
| ++|+++++|.
T Consensus 578 LgpgaG~~gG~iv~~G~ 594 (972)
T 2r6f_A 578 IGPGAGIHGGEVVAAGT 594 (972)
T ss_dssp ECSSSGGGCCSEEEEEC
T ss_pred eCCCccCCCCEEEEecC
Confidence 9 7999999886
No 110
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=8.2e-20 Score=179.84 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=79.6
Q ss_pred EeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC-CCCCceEEEECCEeCCCCCHHHHhhcceEEc
Q 012523 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (461)
Q Consensus 236 ~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl-~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 314 (461)
+||++.|++ ..++++++|+| +|+||||||||||++.|.|. ..|++| +.++|.++.. . .. ++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEEe
Confidence 478888853 35999999988 99999999999999999998 889999 8888877643 1 11 35689999
Q ss_pred cCCccc-cccHHhhcCCCCCCCH-HHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 315 QEPTLF-RGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 315 Q~~~lf-~~ti~~Nl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
|++..+ .-|+.|+..++..... ++.....+. +.+..+.. ..++|||||||+++|||++ +++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~-----------~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERY-----------LHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTHHHH--HHHHHHHH-----------HHHHTSSCCTTCCCCCCCE----EEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHH-----------HHHhCHHhhhhhhhhhhhh----eee
Confidence 987665 4588888865321111 111111111 11111111 1347999999999999985 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHHHcC--CcEEEEEccCch
Q 012523 393 LDEATAS-IDSATDAILQRIIREEFP--GSTVITIAHRVP 429 (461)
Q Consensus 393 LDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~ 429 (461)
+||||++ ||+... +.++...+ +.++|+.+|++.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999985 999764 33333322 578888899974
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=1.9e-19 Score=177.15 Aligned_cols=174 Identities=15% Similarity=0.109 Sum_probs=114.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH----HHH--hhcceEEccCCccccc-cHHhhcCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL--RTKLSIIPQEPTLFRG-SVRTNLDPL 331 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~lf~~-ti~~Nl~~~ 331 (461)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+..... ..+ |..+++++|++.+++. ++.+|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999865431 222 4569999999987754 777877421
Q ss_pred CCCCHHHHHHHHHHccHHHHHHhCCCcccccc--cCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCCCCHHHHHH
Q 012523 332 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSV--SDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATASIDSATDAI 407 (461)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~--~~~g~~lSgGq~Qrl~lARal~~~p~--iliLDEpts~LD~~~~~~ 407 (461)
... +.+..+ +||.= ......++..++||.++|||+..+|+ ++.|| |+++.+
T Consensus 181 -----------~~~-~~d~~l------lDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------ 235 (304)
T 1rj9_A 181 -----------KAR-GYDLLF------VDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------ 235 (304)
T ss_dssp -----------HHH-TCSEEE------ECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------
T ss_pred -----------HhC-CCCEEE------ecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------
Confidence 000 000000 11110 00111246677999999999999999 55666 555543
Q ss_pred HHHHHHHHc--CCcEEEEEccCchhhhh----------cCEEEEEeCCEEEEccchhhHHHh
Q 012523 408 LQRIIREEF--PGSTVITIAHRVPTITD----------SDMVMVLSYGSFSFNNVNFCVQRI 457 (461)
Q Consensus 408 i~~~l~~~~--~~~tvi~itH~~~~~~~----------~d~i~vl~~G~i~~~~~~~~~~~~ 457 (461)
+.+.++... .+.|+|++||...+.+. --.|..+-.|+-+++-..|-.+|+
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~ 297 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAF 297 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHH
Confidence 333333321 26899999998654321 246777777775544444444444
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=2.2e-19 Score=183.75 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=99.5
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcc
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i 310 (461)
+.|.++|+++.|+. ..+++|++|+| +|+||||||||||++.|+|...|..| .+|.++... ....+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 35899999999953 35999999998 99999999999999999999886655 234332211 11123568
Q ss_pred eEEccCCccc-cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 012523 311 SIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (461)
Q Consensus 311 ~~v~Q~~~lf-~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ 389 (461)
++++|++.++ ..|+.||+.+.......+.++. +.+++.. .++.+++||++||||++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999998876 5699999875432222221221 1122221 234566789999999999999
Q ss_pred ---EEEEeCCC-CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 012523 390 ---ILILDEAT-ASIDSATDAILQRIIREEFPGSTVITIAHRVPTI 431 (461)
Q Consensus 390 ---iliLDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 431 (461)
+|++|||| ++||+... .+++ ....+.++|+|.|+.+.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 99999999 69998763 2333 333478889998887654
No 113
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.72 E-value=1.5e-18 Score=192.35 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=104.3
Q ss_pred cEEEEeEEEEe-----CCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHH
Q 012523 232 RIELEDLKVRY-----RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 306 (461)
Q Consensus 232 ~i~~~~v~~~y-----~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~ 306 (461)
.+++++...-. +.++..+++|++|++++|++++|+|||||||||++|++.++.- +
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--------------------~ 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--------------------M 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------H
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------H
Confidence 57777754321 1124569999999999999999999999999999999865311 1
Q ss_pred hhcceEEccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhc
Q 012523 307 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (461)
Q Consensus 307 r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~ 386 (461)
.+.-.++|++..-+ .+.+++. ...++.+.+. .+...+|+|++|+..++++ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh-cc
Confidence 11122344332110 0111110 0111111111 1225689999999999999 89
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHHHH--cCCcEEEEEccCchhhhhcCEE
Q 012523 387 RNRILILDEATASIDSATDAILQ-RIIREE--FPGSTVITIAHRVPTITDSDMV 437 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~-~~l~~~--~~~~tvi~itH~~~~~~~~d~i 437 (461)
+|+++||||||+|+|+.....+. ..++.. ..++|+|++||+++..+.||+.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 99999999999999998877776 555543 2489999999999887766653
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.72 E-value=2.5e-18 Score=161.33 Aligned_cols=165 Identities=10% Similarity=0.025 Sum_probs=113.3
Q ss_pred ccccceeE-EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhh---cceEEccCCcccccc
Q 012523 248 LVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGS 323 (461)
Q Consensus 248 ~~l~~i~l-~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~t 323 (461)
+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|.+.+.+.+. +...++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 47888887 8999999999999999999999999998888888888866443 3333332 34444443211
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCCC-
Q 012523 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATASI- 400 (461)
Q Consensus 324 i~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~--iliLDEpts~L- 400 (461)
+++......... . . +. .+. ...|.++.++...+.+...+|+ ++++||||+.+
T Consensus 83 --~~~~~~~~~~~~-----~---------~--~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMKE-----K---------E--DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEeccccc-----c---------C--ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 111111111100 0 0 00 011 1348899988888888778999 99999999888
Q ss_pred -CHHHHHHHHHHHHHHc--CCcEEEEEccCc--------hhhhh-cCEEEEEeCCE
Q 012523 401 -DSATDAILQRIIREEF--PGSTVITIAHRV--------PTITD-SDMVMVLSYGS 444 (461)
Q Consensus 401 -D~~~~~~i~~~l~~~~--~~~tvi~itH~~--------~~~~~-~d~i~vl~~G~ 444 (461)
|+.....+.+.|++.. .++|+|+++|.. ..++. ||+|++|++.+
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9887788888887752 478999999998 44655 99999998653
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=5.5e-17 Score=146.44 Aligned_cols=84 Identities=24% Similarity=0.280 Sum_probs=73.2
Q ss_pred CCCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEE--
Q 012523 367 GENWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL-- 440 (461)
Q Consensus 367 g~~lSgGq~Qrl~lARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl-- 440 (461)
...||||||||++|||+++ ++|+++||||||++||+.+...+.+.+++..++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3579999999999999996 5579999999999999999999999999987788999999999999899999855
Q ss_pred eCCEEEEccc
Q 012523 441 SYGSFSFNNV 450 (461)
Q Consensus 441 ~~G~i~~~~~ 450 (461)
++|.-....+
T Consensus 142 ~~g~s~~~~~ 151 (173)
T 3kta_B 142 RDGVSKVVSL 151 (173)
T ss_dssp ETTEEEEEEC
T ss_pred cCCEEEEEEE
Confidence 5776443333
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.71 E-value=5.9e-20 Score=185.35 Aligned_cols=148 Identities=17% Similarity=0.105 Sum_probs=110.6
Q ss_pred EEEeEEEE---eCCCCCccc---------cceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC
Q 012523 234 ELEDLKVR---YRPNTPLVL---------KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (461)
Q Consensus 234 ~~~~v~~~---y~~~~~~~l---------~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~ 301 (461)
+|+||+|+ |++..+++| +++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 78899998 854223455 9999999999999999999999999999999999999999999984 455
Q ss_pred CHHHHhhcceEEc-cCCcc---ccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHH
Q 012523 302 GLKDLRTKLSIIP-QEPTL---FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (461)
Q Consensus 302 ~~~~~r~~i~~v~-Q~~~l---f~~ti~~Nl~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Q 376 (461)
.....++.+++++ |++.+ +..|+++|+... ....+..+...++.+.+.+++..+|.|++|.+++-+.+-+.+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 5555678899999 88876 677999999642 122222222223345566788889999999898777777888899
Q ss_pred HHHHHHH
Q 012523 377 LFCLGRV 383 (461)
Q Consensus 377 rl~lARa 383 (461)
|+.....
T Consensus 295 Rl~~l~~ 301 (361)
T 2gza_A 295 RLALMVL 301 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9987753
No 117
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.71 E-value=1.1e-17 Score=185.02 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=80.2
Q ss_pred ccCCCCCCChhHHHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhhhcCEEEE
Q 012523 363 VSDEGENWSVGQRQLFCLGRVLLKR--NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMV 439 (461)
Q Consensus 363 ~~~~g~~lSgGq~Qrl~lARal~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~v 439 (461)
+.....+|||||+||++||++|..+ |++|||||||++||+...+.+.+.|+++. .+.|||+|+||+++++.||+|++
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 594 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVD 594 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEE
Confidence 4556678999999999999999999 58999999999999999999999988764 48999999999999999999999
Q ss_pred E------eCCEEEEccc
Q 012523 440 L------SYGSFSFNNV 450 (461)
Q Consensus 440 l------~~G~i~~~~~ 450 (461)
| ++|+++++|.
T Consensus 595 Lgp~aG~~gG~iv~~G~ 611 (993)
T 2ygr_A 595 IGPGAGEHGGRIVHSGP 611 (993)
T ss_dssp ECSSSGGGCCSCCEEEC
T ss_pred ecCccccCCCEEEEeeC
Confidence 9 7999999886
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=169.16 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=113.7
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcE--EEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhc
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~--v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
.+++++ ++.|++ .+ |+++||++++|++ +||+||||||||||+++|+|+. ++|.++...++...++.
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 356666 778853 34 9999999999999 9999999999999999999994 45555544344445668
Q ss_pred ceEEccCCcccc-ccHHhhcCCCCCCCHHHHHHH----HHHccHHHHHHhC-------CCccccc-------ccCCCCCC
Q 012523 310 LSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEA----MEKCQLKATISRL-------PMLLDSS-------VSDEGENW 370 (461)
Q Consensus 310 i~~v~Q~~~lf~-~ti~~Nl~~~~~~~~~~~~~~----~~~~~l~~~i~~l-------~~gl~t~-------~~~~g~~l 370 (461)
++|++|++.++. .|+.||+.++...+.+.-++. ++. ....++... +..-|+. +.+.+..|
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 999999998874 599999987654443221111 111 122333322 1112222 12334456
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-Hc-CCcEEEEEccC
Q 012523 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIRE-EF-PGSTVITIAHR 427 (461)
Q Consensus 371 SgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~ 427 (461)
+... +.++++|..+++++++|+|+..|.+.....+.+.+++ .. .+.+++.++.+
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 6665 7999999999999999999999998877777777776 43 46788888854
No 119
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.67 E-value=1.5e-17 Score=182.82 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=105.1
Q ss_pred cEEEEeEEEEeCC-----CCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEEECCEeCCCCCHHH
Q 012523 232 RIELEDLKVRYRP-----NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKD 305 (461)
Q Consensus 232 ~i~~~~v~~~y~~-----~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~i~g~~i~~~~~~~ 305 (461)
.+++++.. +|- ++..+++|++|+ ++|++++|+|||||||||++|+++|+..+ ..| ..+..
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----- 642 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----- 642 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----
Confidence 47777753 221 234689999999 99999999999999999999999997432 122 11110
Q ss_pred HhhcceEEccCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 306 LRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 306 ~r~~i~~v~Q~~~lf~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
-+..+++++| +|.. ++.+|+.. | ...+|+++++ ++.+...
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~---------------------------~--------~stf~~e~~~-~~~il~~ 683 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLAS---------------------------G--------RSTFMVEMTE-TANILHN 683 (800)
T ss_dssp SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHh---------------------------h--------hhhhhHHHHH-HHHHHHh
Confidence 0233555544 2321 33333310 0 1235666654 4444456
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCcEEEEEccCchhhhhcCEEEEEeCCEEEE
Q 012523 385 LKRNRILILDEATASIDSATDAIL-QRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGSFSF 447 (461)
Q Consensus 385 ~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~ 447 (461)
+.+|+++|||||++|+|+.....+ ...++... .++|+|++||+.+....||++..+++|++..
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 899999999999999988554433 45555542 3789999999998888888887777777653
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.66 E-value=2.1e-17 Score=155.08 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=96.6
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC--CceEEEECCEeCCCCCHHHHhhcceEEccCCccccc-cH----Hh
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV----RT 326 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~~ 326 (461)
.-..++|++++|+||||||||||+++|+|+++| ..|+|.+.+.+... ..+..++|++|++..|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346789999999999999999999999999986 78999998876542 235679999999988865 45 46
Q ss_pred hcCCCCCC---CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 012523 327 NLDPLGMY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (461)
Q Consensus 327 Nl~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~ 403 (461)
|+.+.... +.++ ++.++..++++||| ||+.
T Consensus 86 ~~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~ 118 (219)
T 1s96_A 86 HAEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQ 118 (219)
T ss_dssp EEEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHH
T ss_pred HHHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHH
Confidence 65432211 1111 22333446999999 9999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEEeCC
Q 012523 404 TDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443 (461)
Q Consensus 404 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G 443 (461)
+.+.+.+.+. ++.||++++|+++.++. |+ +++|
T Consensus 119 ~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG 151 (219)
T 1s96_A 119 GAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG 151 (219)
T ss_dssp HHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS
T ss_pred HHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC
Confidence 9999988775 47899999999988765 32 5666
No 121
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.63 E-value=9.4e-19 Score=171.17 Aligned_cols=129 Identities=11% Similarity=0.029 Sum_probs=92.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCC----
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---- 333 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~---- 333 (461)
+++.+++|+|+||||||||++.|.+++++. | . . ++.+.+|+||+++|+.+.++|+.+..+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999863 2 0 1 345666699999999999999743110
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCCccccc------ccCCCCCCChhHHHHHHHH--HHhhcCCCEEEEeCCCCCCCHHH
Q 012523 334 YSDNEIWEAMEKCQLKATISRLPMLLDSS------VSDEGENWSVGQRQLFCLG--RVLLKRNRILILDEATASIDSAT 404 (461)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~i~~l~~gl~t~------~~~~g~~lSgGq~Qrl~lA--Ral~~~p~iliLDEpts~LD~~~ 404 (461)
.......++.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||||+++|++.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000011222334667888899997764 3455688999999999998 666 999999999999999853
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.63 E-value=3.1e-18 Score=156.48 Aligned_cols=151 Identities=14% Similarity=0.034 Sum_probs=93.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 335 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~ 335 (461)
.+++|++++|+|||||||||++++|+|. |+.|.|.++|.++..... .++.++|++|++. ...++.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999976532211 1234678888654 3457777764210
Q ss_pred HHHHHHHHHHccHHHHHHhCC--Cccccc--ccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 012523 336 DNEIWEAMEKCQLKATISRLP--MLLDSS--VSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRI 411 (461)
Q Consensus 336 ~~~~~~~~~~~~l~~~i~~l~--~gl~t~--~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~ 411 (461)
. .... .+....++... .+++.. .+.....+|+|++|++++||++.++|+++ +|++..+.+.+.
T Consensus 77 --~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 77 --G--RYAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp --H--HHHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred --H--HHhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 0 0000 00000000000 001100 02233568999999999999999999876 588776667666
Q ss_pred HHHHcCCcEEEEEccC
Q 012523 412 IREEFPGSTVITIAHR 427 (461)
Q Consensus 412 l~~~~~~~tvi~itH~ 427 (461)
++.......+++.|++
T Consensus 144 ~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 144 FADLGAFEHHVLPVSG 159 (191)
T ss_dssp TTCCGGGGGGEEECTT
T ss_pred HhccCcccccEEECCC
Confidence 6543222234445554
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.63 E-value=4e-16 Score=145.26 Aligned_cols=151 Identities=18% Similarity=0.088 Sum_probs=96.2
Q ss_pred ccccceeE-EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 248 LVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 248 ~~l~~i~l-~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
+.|+++.. -+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+...+++.. +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~---------------~ 67 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMA---------------E 67 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHH---------------H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHH---------------H
Confidence 35666655 689999999999999999999999999 4334445554322 11222222110 0
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChh--HHHHHHHHHHhhcC-CCEEEEeCCCCCCCHH
Q 012523 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG--QRQLFCLGRVLLKR-NRILILDEATASIDSA 403 (461)
Q Consensus 327 Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgG--q~Qrl~lARal~~~-p~iliLDEpts~LD~~ 403 (461)
.. ....++ ..+.+. + ...|++ |+|+++.+|+++++ |+++++||||+.+|+.
T Consensus 68 ~~----~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 68 TR----GLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp TT----TCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred hc----CCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 00 011111 111110 1 123344 46789999999986 9999999999999974
Q ss_pred HH--------HHHHHHHHHHc--CCcEEEEEccCch-------------hhh-hcCEEEEEeCC
Q 012523 404 TD--------AILQRIIREEF--PGSTVITIAHRVP-------------TIT-DSDMVMVLSYG 443 (461)
Q Consensus 404 ~~--------~~i~~~l~~~~--~~~tvi~itH~~~-------------~~~-~~d~i~vl~~G 443 (461)
.+ ..+.+.|++.. .++|+|+++|... .++ .||++++|++.
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 32 33444455543 2789999999765 344 49999999765
No 124
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.63 E-value=3.4e-16 Score=152.07 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=95.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcC-CCCCCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-PLGMYS 335 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~-~~~~~~ 335 (461)
+++|++++|+||||||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+..++. ......
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~~ 95 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHLS 95 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTSC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhcC
Confidence 78999999999999999999999998654 46653 3443211 2356676655432 11222221 111222
Q ss_pred HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC--CCCHHHH---HHHHH
Q 012523 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA--SIDSATD---AILQR 410 (461)
Q Consensus 336 ~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts--~LD~~~~---~~i~~ 410 (461)
..+..+.++... +....+.....||+||.|++ |+++++|+++|+||||+ ++|+... ..+.+
T Consensus 96 ~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~ 161 (279)
T 1nlf_A 96 AEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG 161 (279)
T ss_dssp HHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH
T ss_pred hhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHH
Confidence 222222233222 22333456678999998765 68889999999999999 9987443 66777
Q ss_pred HHHHHc--CCcEEEEEccCchhh
Q 012523 411 IIREEF--PGSTVITIAHRVPTI 431 (461)
Q Consensus 411 ~l~~~~--~~~tvi~itH~~~~~ 431 (461)
.|++.. .++|+|+++|.....
T Consensus 162 ~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 162 RMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHcCCEEEEEecCCCcc
Confidence 777653 389999999987654
No 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.62 E-value=1.1e-17 Score=165.80 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=107.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC--------CCCceEEEECCEeCCCCC---------------HHHHhhcceEE---c
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV--------EPENGRILIDGLDICSMG---------------LKDLRTKLSII---P 314 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~--------~~~~G~i~i~g~~i~~~~---------------~~~~r~~i~~v---~ 314 (461)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999998 789999999999987653 34677789988 7
Q ss_pred cCCcc-ccccHHhhcCCCCCCCHHHHHHHH-HHccHHHHHHhCCCcccccccC-----CCCCCChhHHHHHHHHHHhhcC
Q 012523 315 QEPTL-FRGSVRTNLDPLGMYSDNEIWEAM-EKCQLKATISRLPMLLDSSVSD-----EGENWSVGQRQLFCLGRVLLKR 387 (461)
Q Consensus 315 Q~~~l-f~~ti~~Nl~~~~~~~~~~~~~~~-~~~~l~~~i~~l~~gl~t~~~~-----~g~~lSgGq~Qrl~lARal~~~ 387 (461)
|++.+ |+.++.||..+.. ...+.+.+ ....... ...+ ++.-+.++- .-.++|+||+||...+++++.+
T Consensus 85 q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~~~-~~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVLCQ-RYLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHHHH-HEEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred hcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccccC-eEEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 88764 5779999986532 12221111 0000000 0000 011111110 0125899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCch
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP 429 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 429 (461)
|+++ ||| +.+.+.+++..++.|++++||+..
T Consensus 160 ~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 160 TDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred cccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 9977 888 567777777767899999999754
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.60 E-value=1.1e-15 Score=144.59 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=90.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHcc--CCCC-----CceEEEECCEeCCC-CCHHHHhhcceEEccCCccccccHHhh
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFR--LVEP-----ENGRILIDGLDICS-MGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~g--l~~~-----~~G~i~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~ti~~N 327 (461)
-+++|++++|+||||||||||++.+++ ..+| .+|.+++++.+... -....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 67889998865211 1122344556666553 4566
Q ss_pred cCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCCCHH--
Q 012523 328 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASIDSA-- 403 (461)
Q Consensus 328 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~--~~p~iliLDEpts~LD~~-- 403 (461)
+.+....+.++..+.++ -++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQLLY-----------------------------------QASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHHHH-----------------------------------HHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 54332233222222211 111111 589999999999999975
Q ss_pred -----HH-----HHHHHHHHHHc--CCcEEEEEccCchh-------------------hh-hcCEEEEEeCC
Q 012523 404 -----TD-----AILQRIIREEF--PGSTVITIAHRVPT-------------------IT-DSDMVMVLSYG 443 (461)
Q Consensus 404 -----~~-----~~i~~~l~~~~--~~~tvi~itH~~~~-------------------~~-~~d~i~vl~~G 443 (461)
.+ ..+.+.+.+.. .++|+|+++|.... ++ .||.+++|++|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23444444432 37899999996543 22 48999999876
No 127
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.60 E-value=1.5e-18 Score=161.39 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=84.4
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCC--CC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--MY 334 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~--~~ 334 (461)
.++|++++|+||||||||||+++|+|+++|. | ..+++|+++.+.+..+..+|+.... ..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 3 2467777777767666666653110 11
Q ss_pred CHHHHHHHHHHccHHHHHHhCCCc--ccccccCCCCCCChhHHHHHHHH-HHhhcCCCEEEEeCCC
Q 012523 335 SDNEIWEAMEKCQLKATISRLPML--LDSSVSDEGENWSVGQRQLFCLG-RVLLKRNRILILDEAT 397 (461)
Q Consensus 335 ~~~~~~~~~~~~~l~~~i~~l~~g--l~t~~~~~g~~lSgGq~Qrl~lA-Ral~~~p~iliLDEpt 397 (461)
. .+.+...+.+.+..++.| +++++.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 ~-----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 P-----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp G-----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred C-----chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0 001111122233333333 77788899999999999999998 9999999998899985
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=1.6e-17 Score=166.05 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=114.0
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH----HHHhh
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRT 308 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~----~~~r~ 308 (461)
++++|+++.|+. ..+++++|+++++|++++|+||||||||||++.|+|++.|++|+|.+.|.++..... ...|.
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 344556666742 348999999999999999999999999999999999999999999999988754321 23567
Q ss_pred cceEEccCCccccc----------c---HHhhc--------C------CCCCCCHHHHHHHHHH-------------ccH
Q 012523 309 KLSIIPQEPTLFRG----------S---VRTNL--------D------PLGMYSDNEIWEAMEK-------------CQL 348 (461)
Q Consensus 309 ~i~~v~Q~~~lf~~----------t---i~~Nl--------~------~~~~~~~~~~~~~~~~-------------~~l 348 (461)
++++++|++.+|.. | .+|.+ . .+-..++..+.+.++. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999988741 1 11111 0 0000011111000000 000
Q ss_pred HHHHHhCCCccc-cccc-CCCCCCChhHHHHHHHHHHhhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 012523 349 KATISRLPMLLD-SSVS-DEGENWSVGQRQLFCLGRVLLK------RNRILILDEATASIDSATDAILQRIIREE 415 (461)
Q Consensus 349 ~~~i~~l~~gl~-t~~~-~~g~~lSgGq~Qrl~lARal~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~ 415 (461)
...+...|.-+- +... .....+|+|++|++..|++++. +|+++. ||++|.+.-..+.+.+.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111121110 1111 0123478999999999999987 688876 9999999888888888764
No 129
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.50 E-value=4.2e-16 Score=148.62 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=93.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHc---cCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc-cHHhhcCCC---
Q 012523 259 EGTRVGVVGRTGSGKTTLISALF---RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPL--- 331 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~---gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~--- 331 (461)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.+++. ++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 1344556777787776654 777776320
Q ss_pred ---------C-CCCHHHHHHHHH--HccHHHHHHhCCC--cccccccCCCCCCChhHHHHHHHHHHh-hcCCCEEEEe--
Q 012523 332 ---------G-MYSDNEIWEAME--KCQLKATISRLPM--LLDSSVSDEGENWSVGQRQLFCLGRVL-LKRNRILILD-- 394 (461)
Q Consensus 332 ---------~-~~~~~~~~~~~~--~~~l~~~i~~l~~--gl~t~~~~~g~~lSgGq~Qrl~lARal-~~~p~iliLD-- 394 (461)
+ +.+.++.....+ ..++--++ ..|. .++.........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L-~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISL-NIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEE-ECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEE-ECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 111211111110 01100000 0000 011111223356888 55 788 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHc
Q 012523 395 --EATASIDSATDAILQRIIREEF 416 (461)
Q Consensus 395 --Epts~LD~~~~~~i~~~l~~~~ 416 (461)
|||+++|+.++..+.+.++.+.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999888888887653
No 130
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.50 E-value=3.5e-17 Score=149.43 Aligned_cols=161 Identities=16% Similarity=0.051 Sum_probs=103.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc-cccHHhhcCCCCCCCHHH
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNE 338 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~Nl~~~~~~~~~~ 338 (461)
|++++|+|||||||||+++.|++ |.+|.+.++|.++... ...++++|....+ ..++++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999997 6789999998654321 2457777765333 23666665310
Q ss_pred HHHHHHHccHHHHHHhCCCcccccccC----CCCCC--ChhHHHHHHHHH------HhhcCCCEEEEeCCCCCCCHHHHH
Q 012523 339 IWEAMEKCQLKATISRLPMLLDSSVSD----EGENW--SVGQRQLFCLGR------VLLKRNRILILDEATASIDSATDA 406 (461)
Q Consensus 339 ~~~~~~~~~l~~~i~~l~~gl~t~~~~----~g~~l--SgGq~Qrl~lAR------al~~~p~iliLDEpts~LD~~~~~ 406 (461)
...... .+ .+.=++...+. .-..+ |+|++|++.++. +++++|+...+|+ ++|+...+
T Consensus 66 ~~~~~~-~~-------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 66 TVNFLL-AQ-------NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp HHHHHH-TT-------CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred HHHHHh-cC-------CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 000000 00 00001110000 00123 788888887777 8888888777884 78987766
Q ss_pred HHHHHHHHHcC-CcEEEEEccC-chhhhh-cCEEEEEeCCEEEEccc
Q 012523 407 ILQRIIREEFP-GSTVITIAHR-VPTITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 407 ~i~~~l~~~~~-~~tvi~itH~-~~~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
. .+.+..... +.++|..||. ++.++. ||+|+ ++|+++.+|.
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~ 178 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMA 178 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--
T ss_pred H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeec
Confidence 6 677766543 5799999999 888876 99998 9999988765
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.9e-14 Score=143.99 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcc-CCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc-cccHHhhcCCCCCCCHHHH
Q 012523 262 RVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEI 339 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g-l~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~Nl~~~~~~~~~~~ 339 (461)
.+.|+||+|+||||+++.++| ++.|+.|.+.++|.+..... ..+..+++++|.+++. +.+- ........+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 109 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD------MGNNDRIVI 109 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh------cCCcchHHH
Confidence 399999999999999999999 89999999999998765422 2367799999987652 1110 001111123
Q ss_pred HHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc
Q 012523 340 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGS 419 (461)
Q Consensus 340 ~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 419 (461)
.+.++.+ .... +++..+ .+|| +..+|+++|+|||++ ||+.+...+.+.+++..++.
T Consensus 110 ~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 110 QELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp HHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTE
T ss_pred HHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCC
Confidence 3322221 1111 111111 4566 778999999999999 99999999999998876788
Q ss_pred EEEEEccCchhh
Q 012523 420 TVITIAHRVPTI 431 (461)
Q Consensus 420 tvi~itH~~~~~ 431 (461)
++|++||+++.+
T Consensus 166 ~~Il~t~~~~~l 177 (354)
T 1sxj_E 166 RLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEESCSCSS
T ss_pred EEEEEeCCHHHH
Confidence 999999997643
No 132
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.48 E-value=1e-15 Score=136.20 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=70.3
Q ss_pred EeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEcc
Q 012523 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (461)
Q Consensus 236 ~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 315 (461)
+|+++.|+ ...+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.+. ...+ .+++|
T Consensus 11 ~~~~~~~g--~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFG--KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHH--HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHH--HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 45566674 235899999999999999999999999999999999999 9999999999877421 1111 27999
Q ss_pred CCccccccHHhhcC
Q 012523 316 EPTLFRGSVRTNLD 329 (461)
Q Consensus 316 ~~~lf~~ti~~Nl~ 329 (461)
++.+|.-|+.||+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888778888874
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.48 E-value=1.8e-14 Score=142.99 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=114.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH----Hhhc--ceEEccCCccccc-cHHhhc
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----LRTK--LSIIPQEPTLFRG-SVRTNL 328 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~----~r~~--i~~v~Q~~~lf~~-ti~~Nl 328 (461)
..++|++++++|||||||||+++.|+|++.|++|+|.++|.|+......+ ++++ +.+++|++.+++. ++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999999999987665432 3444 4499999887754 788887
Q ss_pred CCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHH
Q 012523 329 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAIL 408 (461)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i 408 (461)
.... .+.... + -+||. |.. ..-..=..+.-.++|++..++++++||.+|. .|... .
T Consensus 205 ~~~~----------~~~~d~---v-----liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~---~ 260 (328)
T 3e70_C 205 QHAK----------ARGIDV---V-----LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE---Q 260 (328)
T ss_dssp HHHH----------HHTCSE---E-----EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH---H
T ss_pred HHHH----------hccchh---h-----HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH---H
Confidence 4210 000000 0 01221 100 0011123444558999999999999996665 33222 1
Q ss_pred HHHHHHHcCCcEEEEEccCchhh----------hhcCEEEEEeCCEEEEccchhhHHHhH
Q 012523 409 QRIIREEFPGSTVITIAHRVPTI----------TDSDMVMVLSYGSFSFNNVNFCVQRII 458 (461)
Q Consensus 409 ~~~l~~~~~~~tvi~itH~~~~~----------~~~d~i~vl~~G~i~~~~~~~~~~~~~ 458 (461)
.+.+.+ ..+.|.|++||--.+. ...-.|..+..|+-+++=..|-.+|+.
T Consensus 261 ~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~ 319 (328)
T 3e70_C 261 ARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFL 319 (328)
T ss_dssp HHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHH
T ss_pred HHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHH
Confidence 122222 2378999999954321 124678999999877654445555554
No 134
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.47 E-value=8.9e-14 Score=140.66 Aligned_cols=74 Identities=24% Similarity=0.325 Sum_probs=67.2
Q ss_pred CCCChhHHHHH------HHHHHhhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEE
Q 012523 368 ENWSVGQRQLF------CLGRVLLKR-NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 368 ~~lSgGq~Qrl------~lARal~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
..|||||+||+ ++|||+..+ |++|||||||++||+.+...+.+.|.+..++.++|++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999987 668999999 99999999999999999999999998865567999999999866679999999
Q ss_pred e
Q 012523 441 S 441 (461)
Q Consensus 441 ~ 441 (461)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 135
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.46 E-value=3.9e-14 Score=146.37 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=117.6
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC----HHH--HhhcceEEccCCccc-cc
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKD--LRTKLSIIPQEPTLF-RG 322 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf-~~ 322 (461)
-+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|..... ... .|..++|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887764321 122 367899999998765 44
Q ss_pred cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCC------CCCChhHHHHHHHHHHhhc-CC-CEEEEe
Q 012523 323 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEG------ENWSVGQRQLFCLGRVLLK-RN-RILILD 394 (461)
Q Consensus 323 ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g------~~lSgGq~Qrl~lARal~~-~p-~iliLD 394 (461)
++++|+.+.. . .|+|..+-+.. .++-.-.+|++.++|++.. .| .+|+..
T Consensus 363 tV~e~l~~a~------------~-----------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 363 VIFDAIQAAK------------A-----------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHH------------H-----------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHH------------h-----------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8888875310 0 01111111100 1111223578889997754 45 355555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchh--------hh-h-cCEEEEEeCCEEEEccchhhHHHhH
Q 012523 395 EATASIDSATDAILQRIIREEFPGSTVITIAHRVPT--------IT-D-SDMVMVLSYGSFSFNNVNFCVQRII 458 (461)
Q Consensus 395 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~--------~~-~-~d~i~vl~~G~i~~~~~~~~~~~~~ 458 (461)
+||++.|.... .+.+.+. -+.|.+++||--.+ +. . --.|..+-.|+-+++-..|-.+|+.
T Consensus 420 DattGq~al~~---ak~f~~~-~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v 489 (503)
T 2yhs_A 420 DASTGQNAVSQ---AKLFHEA-VGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFI 489 (503)
T ss_dssp EGGGTHHHHHH---HHHHHHH-TCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHH
T ss_pred cCcccHHHHHH---HHHHHhh-cCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHH
Confidence 58888654321 2223222 36899999993232 11 1 3577778788765555555555553
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.45 E-value=7.8e-14 Score=141.94 Aligned_cols=145 Identities=14% Similarity=0.193 Sum_probs=93.9
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHH--HccCCCCCce-----EEEECCEeCCCCCHH---HHhhcceEEccCCccccccHH
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISA--LFRLVEPENG-----RILIDGLDICSMGLK---DLRTKLSIIPQEPTLFRGSVR 325 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~l--l~gl~~~~~G-----~i~i~g~~i~~~~~~---~~r~~i~~v~Q~~~lf~~ti~ 325 (461)
-|++|++++|+||||||||||++. +.+..+++.| .+++++.+. ++.. .+++++++.+| ++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~--~~~~rl~~~a~~~gl~~~-------~vl 244 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT--FRPVRLVSIAQRFGLDPD-------DAL 244 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc--cCHHHHHHHHHHcCCChH-------hHh
Confidence 589999999999999999999994 4577776444 889988653 2332 33455666554 566
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--hcCCCEEEEeCCCCCCCHH
Q 012523 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILILDEATASIDSA 403 (461)
Q Consensus 326 ~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal--~~~p~iliLDEpts~LD~~ 403 (461)
+|+.+....+.++..+. +.-++.+ -.+|+++++||||+.+|++
T Consensus 245 eni~~~~~~~~~~~~~~-----------------------------------l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 245 NNVAYARAYNADHQLRL-----------------------------------LDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp HTEEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred hcEEEeccCChHHHHHH-----------------------------------HHHHHHHHHhcCCceEEecchhhhCchh
Confidence 77754333332222111 1111111 2479999999999999975
Q ss_pred HH------------HHHHHHHHHHc--CCcEEEEEccCc-------------------hhhhh-cCEEEEEeCCE
Q 012523 404 TD------------AILQRIIREEF--PGSTVITIAHRV-------------------PTITD-SDMVMVLSYGS 444 (461)
Q Consensus 404 ~~------------~~i~~~l~~~~--~~~tvi~itH~~-------------------~~~~~-~d~i~vl~~G~ 444 (461)
.. ..+++.|+++. .+.|+|+++|.. ..+++ +|.++.|++|+
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 33 44566666543 378999999982 22344 89999998864
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.45 E-value=1.9e-16 Score=166.18 Aligned_cols=172 Identities=17% Similarity=0.142 Sum_probs=113.0
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCcccc--ccHH
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR--GSVR 325 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~--~ti~ 325 (461)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +..++++.|+.. .. .|..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999998865222221 345677777654 32 2555
Q ss_pred hhcCC----------CCCCCHHHHHHHHHHcc-------------HHHHHHhC---CCccccccc-------CCCCCCCh
Q 012523 326 TNLDP----------LGMYSDNEIWEAMEKCQ-------------LKATISRL---PMLLDSSVS-------DEGENWSV 372 (461)
Q Consensus 326 ~Nl~~----------~~~~~~~~~~~~~~~~~-------------l~~~i~~l---~~gl~t~~~-------~~g~~lSg 372 (461)
+++.. .++..+.+...++..+. ..+.+.++ |.|+...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 54421 12344444444443321 22333322 223322221 12345799
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEE--EccCchhhhh-cC
Q 012523 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVIT--IAHRVPTITD-SD 435 (461)
Q Consensus 373 Gq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~--itH~~~~~~~-~d 435 (461)
||+||.++|. + | |++||+...+.+.+.+.++.+ ++|+++ +||+++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999987752 1 6 999999877666666655433 678875 8999998764 64
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.45 E-value=1.1e-16 Score=163.78 Aligned_cols=127 Identities=16% Similarity=0.127 Sum_probs=88.1
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC----CHHHHhhcceEEc---------c
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTKLSIIP---------Q 315 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~----~~~~~r~~i~~v~---------Q 315 (461)
+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++... +...++..+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999998877421 1123445566654 9
Q ss_pred CCccc--c-----ccHHhhcCCC--C-------CC-CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 012523 316 EPTLF--R-----GSVRTNLDPL--G-------MY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (461)
Q Consensus 316 ~~~lf--~-----~ti~~Nl~~~--~-------~~-~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl 378 (461)
+|.++ . .|+.+|+... + .. +..+..+.+...++..+. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 88763 2 3777776421 1 11 112233334444433221 124699999999
Q ss_pred HHHHHhhcCCCEEE
Q 012523 379 CLGRVLLKRNRILI 392 (461)
Q Consensus 379 ~lARal~~~p~ili 392 (461)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
No 139
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.43 E-value=1.7e-14 Score=144.28 Aligned_cols=121 Identities=17% Similarity=0.067 Sum_probs=79.8
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-CCceEEEEC-CEeCCCCCHHHHhhcceEEccCCccccc-cHH
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILID-GLDICSMGLKDLRTKLSIIPQEPTLFRG-SVR 325 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-~~~G~i~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 325 (461)
-++++++. .+|++++|+||||||||||+|+|+|+.. |.+|+|.++ |.+.. ...+..+++++|++.+++. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4899999999999999999999999999 999999987 76542 1345679999999988865 888
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 012523 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (461)
Q Consensus 326 ~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal 384 (461)
++-.. ..+.+++.+. ..+++..+ |+....+....++| ||+||++||+++
T Consensus 280 e~~l~--~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCC--CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhhc--CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 86421 2344443221 12222222 33444445567899 999999999986
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.41 E-value=1.3e-13 Score=121.38 Aligned_cols=91 Identities=21% Similarity=0.238 Sum_probs=68.3
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce--EEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G--~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999887 46 455544322110
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHH
Q 012523 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406 (461)
Q Consensus 327 Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~ 406 (461)
+++.+|++|++|||++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2356899999999998 6655577
Q ss_pred HHHHHHHHHcC-CcE-EEEEccC
Q 012523 407 ILQRIIREEFP-GST-VITIAHR 427 (461)
Q Consensus 407 ~i~~~l~~~~~-~~t-vi~itH~ 427 (461)
.+.+.+..... +++ +|++||+
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 78888876543 577 7888885
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.40 E-value=3.9e-14 Score=128.14 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=74.2
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCC
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 333 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~ 333 (461)
++++++|+.++|+||||+|||||++.+++.+.|.+|.. +.|+ +..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~------- 77 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKD------- 77 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHH-------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHH-------
Confidence 46678899999999999999999999999987665521 0010 1111
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 012523 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA-SIDSATDAILQRII 412 (461)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts-~LD~~~~~~i~~~l 412 (461)
+.+.+.. .... + ... -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 78 -----~~~~~~~-----~~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 78 -----LIFRLKH-----LMDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp -----HHHHHHH-----HHHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred -----HHHHHHH-----HhcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 1111100 0000 0 000 1112245899999999995 89999988898888
Q ss_pred HHHc-CCcEEEEEccCch
Q 012523 413 REEF-PGSTVITIAHRVP 429 (461)
Q Consensus 413 ~~~~-~~~tvi~itH~~~ 429 (461)
.... +++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 7754 6889999999864
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.6e-15 Score=147.15 Aligned_cols=143 Identities=19% Similarity=0.120 Sum_probs=102.6
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCC-cccc-ccHH
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFR-GSVR 325 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~ti~ 325 (461)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++......+.++.+++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999887 79999998886655566677899999986 3343 3677
Q ss_pred hhcCCCCCC-CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC------
Q 012523 326 TNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA------ 398 (461)
Q Consensus 326 ~Nl~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts------ 398 (461)
||+...... ...+. .. .......+ ...|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~-~~-----~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-GA-----SVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-hH-----HHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888643211 11110 00 01111111 1347999999999999999999974 99974
Q ss_pred ------CCCHHHHHHHHHHHH
Q 012523 399 ------SIDSATDAILQRIIR 413 (461)
Q Consensus 399 ------~LD~~~~~~i~~~l~ 413 (461)
--|.+.+..+++.+.
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHT
T ss_pred eEEEeCCcCHHHHHHHHHHHH
Confidence 236666666766543
No 143
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=1.9e-13 Score=134.35 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=77.8
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEE---CCEeCCCCCHHHHh-hcceEEccCCccc------cccHH
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLR-TKLSIIPQEPTLF------RGSVR 325 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~ti~ 325 (461)
++.+|++++++||||||||||+|+|+ +.+|++|+|.+ +|.++..... ..+ +.+||++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44579999999999999999999999 99999999999 9988765432 222 3699999999653 3477
Q ss_pred hhc--CCC---------CC-----CCHHHHHHHHHHccHHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 326 TNL--DPL---------GM-----YSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 326 ~Nl--~~~---------~~-----~~~~~~~~~~~~~~l~~-~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
+|+ .+. .. ...+.+.++++..++.+ ..+..| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 777 221 11 11245777888887754 444433 457998888999987
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.33 E-value=1.1e-14 Score=143.66 Aligned_cols=89 Identities=16% Similarity=0.245 Sum_probs=73.0
Q ss_pred ccEEEEeEEEEeCCCCCccccceeEEe-------------------eCCcEEEEEcCCCCCHHHHHHHHccCCC--CCce
Q 012523 231 GRIELEDLKVRYRPNTPLVLKGITCTF-------------------KEGTRVGVVGRTGSGKTTLISALFRLVE--PENG 289 (461)
Q Consensus 231 ~~i~~~~v~~~y~~~~~~~l~~i~l~i-------------------~~Ge~v~ivG~sGsGKSTll~ll~gl~~--~~~G 289 (461)
+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4589999999993 4899999988 8999999999999999999999999998 9999
Q ss_pred EEEE---CCEeCCCCCHHHHhhcceEEccCCcccc-ccHHhhc
Q 012523 290 RILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNL 328 (461)
Q Consensus 290 ~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Nl 328 (461)
+|.+ ||... + ...++.++++ |+..++. -|+.+|+
T Consensus 112 ~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 112 RVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp CEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred eEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 9999 88764 2 2346678888 7665443 2565555
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.29 E-value=2.8e-13 Score=138.47 Aligned_cols=153 Identities=14% Similarity=0.214 Sum_probs=91.6
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcC
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~ 329 (461)
-++++|++++|+.++|+|+||||||||++.|++..+ .+.+.+...+ ...+++|+++.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 3444443332 335777777641 1112333322
Q ss_pred CCC------CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 012523 330 PLG------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (461)
Q Consensus 330 ~~~------~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~ 403 (461)
+.. .... ...+..+.+.. .+.. +|-. .+...+||+|++|+.++|+++..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~~--lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTRV--LLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSSE--EEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHHHh--hhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 111 1111 11111111110 0100 1100 122346899999999999999999999999 889986
Q ss_pred HHHHHHHHHHHH-cCCcEEEEEcc
Q 012523 404 TDAILQRIIREE-FPGSTVITIAH 426 (461)
Q Consensus 404 ~~~~i~~~l~~~-~~~~tvi~itH 426 (461)
....+.+..+.. ..+.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 553333222222 23567777663
No 146
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.27 E-value=1.3e-12 Score=128.30 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=68.0
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEE---CCEeCCCCCHHHHhhcceEEccCCc-------------
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPT------------- 318 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 318 (461)
|++.+|++++++||||||||||+|+|+|+..|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 345679999999999999999999999999999999999 9988866442111236999999985
Q ss_pred ---cccc-cHHhhcCCCC----CCCHHHHHHHHHHccH-HHHHHhCCC
Q 012523 319 ---LFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQL-KATISRLPM 357 (461)
Q Consensus 319 ---lf~~-ti~~Nl~~~~----~~~~~~~~~~~~~~~l-~~~i~~l~~ 357 (461)
+|+. |+ +|+.+.. ...+..+.++++..++ .+..+..|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3543 77 8887532 1224568889999998 466666553
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.23 E-value=1.1e-11 Score=113.81 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=55.7
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc-cHHhhc
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNL 328 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Nl 328 (461)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999974 588888777665544557789999999988765 566665
No 148
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.20 E-value=6.6e-12 Score=122.91 Aligned_cols=142 Identities=20% Similarity=0.134 Sum_probs=97.7
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
+.++++++.|++. . ++++++ +|++++++|+||+||||++..|++++.+..|+|.+.+.|... ... ..
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~--~~~-~~---- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR--PAA-RE---- 143 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC--HHH-HH----
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc--HhH-HH----
Confidence 4556677777432 1 678887 999999999999999999999999999999999998876542 110 00
Q ss_pred EccCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 012523 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (461)
Q Consensus 313 v~Q~~~lf~~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~ili 392 (461)
++....+.. .+| -... +...+..+-+|.+++++...+++++|
T Consensus 144 -------------------------ql~~~~~~~-------~l~----~~~~--~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 144 -------------------------QLRLLGEKV-------GVP----VLEV--MDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------------------HHHHHHHHH-------TCC----EEEC--CTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------------------HHHHhcccC-------CeE----EEEc--CCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 000001110 111 1100 11123445678999999889999999
Q ss_pred EeCC-CCCCCHHHHHHHHHHHHHHcCCcEEEEEc
Q 012523 393 LDEA-TASIDSATDAILQRIIREEFPGSTVITIA 425 (461)
Q Consensus 393 LDEp-ts~LD~~~~~~i~~~l~~~~~~~tvi~it 425 (461)
+||| ++++|...-..+.+..+....+.+++++.
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999 99999888777777776666676766554
No 149
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.19 E-value=2e-13 Score=128.67 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=23.4
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc-cCCCC
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEP 286 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~-gl~~~ 286 (461)
..+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 578999999999999999999999999999999 99854
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.13 E-value=4.5e-11 Score=116.97 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=88.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHH
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 337 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~ 337 (461)
++|++++++|+|||||||+++.|++.+.+++| +++.++.+|++ ..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 47999999999999999999999999988777 24566666652 22222222
Q ss_pred HHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-
Q 012523 338 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF- 416 (461)
Q Consensus 338 ~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~- 416 (461)
....+..+ +| .... ..+...+.+++++ ++|+++|+| |+++|+.....+.+..+-..
T Consensus 154 --~~~~~~~g-------l~----~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 154 --KTYAELLQ-------AP----LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp --HHHHTTTT-------CC----CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred --HHHHHhcC-------CC----eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 11111111 11 1111 1234456777764 899999999 89999876655554433222
Q ss_pred --CCcEEEEE--ccCchhhhh-cCEEEEEeCCEEEEc
Q 012523 417 --PGSTVITI--AHRVPTITD-SDMVMVLSYGSFSFN 448 (461)
Q Consensus 417 --~~~tvi~i--tH~~~~~~~-~d~i~vl~~G~i~~~ 448 (461)
.+.+++++ +|....+.. +|++..++.|.++..
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 33445555 899777765 777766777777653
No 151
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=1e-13 Score=140.52 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=106.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHcc------------CCCCCceEEEECCEeCCCCCHH-HHhhcc---eEEccCCcc
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFR------------LVEPENGRILIDGLDICSMGLK-DLRTKL---SIIPQEPTL 319 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~g------------l~~~~~G~i~i~g~~i~~~~~~-~~r~~i---~~v~Q~~~l 319 (461)
.+++|++++|+|+||||||||++.|+| ..+|+.|.+.++|..+..+... .-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 6789999999987432111000 001112 356666766
Q ss_pred ccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCC
Q 012523 320 FRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEA 396 (461)
Q Consensus 320 f~~-ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p--~iliLDEp 396 (461)
+.+ +..+++. .+....++.+.. +..+ ++..-......+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~-------~~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG-------NAFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC-------HHHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH-------HHHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchhh
Confidence 543 3333331 112222222111 0000 0000012233456653 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-cC-CcEEEEEccCchhhhh-cCEEE-EEeCC-EEEEcc
Q 012523 397 TASIDSATDAILQRIIREE-FP-GSTVITIAHRVPTITD-SDMVM-VLSYG-SFSFNN 449 (461)
Q Consensus 397 ts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~~~~~-~d~i~-vl~~G-~i~~~~ 449 (461)
++.+|++..++..+.++.. .. +.|+ ++|.+..+.. ||++. +|++| +++..|
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~ 206 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKG 206 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecC
Confidence 9999999988888888776 44 4564 3999987765 99999 99999 877544
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.12 E-value=4.1e-11 Score=117.66 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=71.6
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCC
Q 012523 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 332 (461)
Q Consensus 253 i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~ 332 (461)
++++.++|++++++|+|||||||+++.|++.+.+..|+|.+.+.|... . + ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~-------~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--A-------A------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--H-------H------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--H-------H------------HH-------
Confidence 345567899999999999999999999999999999999988766421 0 0 00
Q ss_pred CCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH---HHHHHhhcCCCEEEEeCCCC
Q 012523 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF---CLGRVLLKRNRILILDEATA 398 (461)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl---~lARal~~~p~iliLDEpts 398 (461)
+++...++..+ +| . + ...|+|+.|++ ++++|+.++|+++|+|||..
T Consensus 149 ----eqL~~~~~~~g-------l~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKIWGERVG-------AT----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHHHHHHHT-------CE----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHHHHHHcC-------Cc----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11211222211 11 1 1 23589999999 99999999999999999975
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.11 E-value=2.3e-11 Score=126.03 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=50.1
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~ 302 (461)
+|+|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 79999999999 999999999999999999999999999999999999886543
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.08 E-value=1e-12 Score=122.92 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=91.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC---CCCceEEEE--------CCEeCCC-CCHHHHhhcceEEccCC------cccc
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV---EPENGRILI--------DGLDICS-MGLKDLRTKLSIIPQEP------TLFR 321 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~---~~~~G~i~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf~ 321 (461)
+.+++|+||+||||||+.++|.+.+ .++.|++.. +|.++.+ ....++++.+++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999876 788999987 7776652 34556888999999976 3344
Q ss_pred ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccc-cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 012523 322 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (461)
Q Consensus 322 ~ti~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~-~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpt 397 (461)
.++.+++. ++++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++|+.+++
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 45555542 4667777777777776666544444433 2345566776 4556778889999988874
No 155
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=7.7e-12 Score=122.70 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=43.6
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEE---CCEeCCCCCHHHHhhcceEEccCCcccc-----ccHHh
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-----GSVRT 326 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~~ 326 (461)
+++.+|++++|+||||||||||+|+|+|+..|.+|+|.+ +|..+.... ..++..+++++|.|.++. .|+ +
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999999 887765432 112222899999997654 367 7
Q ss_pred hc
Q 012523 327 NL 328 (461)
Q Consensus 327 Nl 328 (461)
|+
T Consensus 246 ~l 247 (307)
T 1t9h_A 246 EL 247 (307)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 156
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.05 E-value=1.7e-11 Score=117.25 Aligned_cols=72 Identities=25% Similarity=0.257 Sum_probs=61.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHc---cCCCCCceEEE--------ECCEeCC-CCCHHHHhhcceEEccCC------cc
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDIC-SMGLKDLRTKLSIIPQEP------TL 319 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~---gl~~~~~G~i~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 319 (461)
++|++++|+|||||||||++++|+ |++.|++|.+. .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 456778999999999653 45
Q ss_pred ccccHHhhcC
Q 012523 320 FRGSVRTNLD 329 (461)
Q Consensus 320 f~~ti~~Nl~ 329 (461)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5567777764
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.04 E-value=3.6e-11 Score=109.51 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCC-----------CceEEEECCEeCCC--CCHHHHhhcceEEccCCccccc--cHHh
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEP-----------ENGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRG--SVRT 326 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~-----------~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~~--ti~~ 326 (461)
+++|+|+||||||||++.++|...+ ++|+|.++|.++.- ++....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 58999999976531 1111112223333332110000 1122
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCCccc-ccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 012523 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (461)
Q Consensus 327 Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~-t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~ 405 (461)
+... .+.+.+...++. + ....+.... -.++.. ..|..-..+....||+++.+|+++++| ||++|....
T Consensus 111 ~~~~---~s~~~~~~~~~~--~---~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKH---LTYENVERWLKE--L---RDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCH---HHHHTHHHHHHH--H---HHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCH---HHHHHHHHHHHH--H---HHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 1110 001111111111 0 000010000 011111 112221223477899999999999999 999999998
Q ss_pred HHHHHHHHH
Q 012523 406 AILQRIIRE 414 (461)
Q Consensus 406 ~~i~~~l~~ 414 (461)
..+.+.+.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 158
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.01 E-value=3.4e-14 Score=141.62 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=93.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCC-------cEEEEEcCCCCCHHHHHHHHccCC----CCCceEEEECCEeCCCC
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEG-------TRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSM 301 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~G-------e~v~ivG~sGsGKSTll~ll~gl~----~~~~G~i~i~g~~i~~~ 301 (461)
++.++++..|+. ..+++++++.+++| +.++++||||+|||||+++++|.+ .+.+|.+..++.++..+
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 334455555643 34899999999877 899999999999999999999998 66777777666554321
Q ss_pred CHHHHhhcceEEccCCccccccHHhhcCCC-CCCC------HHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhH
Q 012523 302 GLKDLRTKLSIIPQEPTLFRGSVRTNLDPL-GMYS------DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (461)
Q Consensus 302 ~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~-~~~~------~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq 374 (461)
.....+..|.+++|...++. ++.+++... .... ..... +. +...+. +.++.. ...+...||+|+
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~--~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQ--PFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCC--CeEEEE-ecCCcccCCHHH
Confidence 11111356899999877665 677766311 0000 00000 00 001111 112211 123345799999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 012523 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREE 415 (461)
Q Consensus 375 ~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 415 (461)
+||++++ .+||+.+...+.+.+++.
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 9998654 566666666666666553
No 159
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.00 E-value=8.5e-11 Score=106.84 Aligned_cols=127 Identities=14% Similarity=0.231 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCC-------------CCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~-------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
|++++|+||||||||||+++|+|+++ |..|++ +|.+....+...+...+ .++..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 666664 66655545554444332 1333344444444
Q ss_pred hcCCCCCCCHHHHHHHHHH----------ccHHHHHHh--------------CCCcccccccCCCCCCChhHHHHHHHHH
Q 012523 327 NLDPLGMYSDNEIWEAMEK----------CQLKATISR--------------LPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (461)
Q Consensus 327 Nl~~~~~~~~~~~~~~~~~----------~~l~~~i~~--------------l~~gl~t~~~~~g~~lSgGq~Qrl~lAR 382 (461)
|+. + .+.+++.+.++. .+... +.. -++.+...+.++|..-....+||++-|+
T Consensus 76 ~~y-g--~~~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NYY-G--STVASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EEE-E--EEHHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC--------------------------
T ss_pred eec-c--CcHHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 431 1 123344444433 11111 222 1134555666677776677888998888
Q ss_pred Hhh-----cCCCEEEEeC
Q 012523 383 VLL-----KRNRILILDE 395 (461)
Q Consensus 383 al~-----~~p~iliLDE 395 (461)
.-+ ..++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 765 5567777654
No 160
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.98 E-value=7.4e-12 Score=117.64 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=52.3
Q ss_pred cEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH--------
Q 012523 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-------- 303 (461)
Q Consensus 232 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~-------- 303 (461)
.|+++|+...|+. ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5888988755521 466666 8999999999999999999999999999999999998843322
Q ss_pred HHHhhcceEEccC
Q 012523 304 KDLRTKLSIIPQE 316 (461)
Q Consensus 304 ~~~r~~i~~v~Q~ 316 (461)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2246789999985
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.98 E-value=7.8e-13 Score=128.14 Aligned_cols=137 Identities=18% Similarity=0.120 Sum_probs=94.8
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
-+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++........++.+++
T Consensus 50 ~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 50 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 345666666642 35899999999999 99999999999999999999885 7999999877654433445567888
Q ss_pred EccCCc-ccc-ccHHhhcC-CCCCC------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 313 IPQEPT-LFR-GSVRTNLD-PLGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 313 v~Q~~~-lf~-~ti~~Nl~-~~~~~------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
++|++. .++ -++.||+. +.... ..++..+.+ ..++. .|||||+||..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll~---------------~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHHH---------------HHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHHH---------------HHhCCCCCCCEEEEE
Confidence 888764 333 35667763 21110 011111111 12221 368999999999999
Q ss_pred hhcCCCEEEEeCCC
Q 012523 384 LLKRNRILILDEAT 397 (461)
Q Consensus 384 l~~~p~iliLDEpt 397 (461)
+..+|++ +|++.
T Consensus 184 ~t~~p~~--ld~~l 195 (278)
T 1iy2_A 184 ATNRPDI--LDPAL 195 (278)
T ss_dssp EESCTTS--SCHHH
T ss_pred ecCCchh--CCHhH
Confidence 9999986 67764
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.97 E-value=3e-10 Score=107.02 Aligned_cols=166 Identities=13% Similarity=0.134 Sum_probs=88.5
Q ss_pred cccce-eEEeeCCcEEEEEcCCCCCHHHHH-HHHccCCCCCceEEEECCEeCCCCCHHHHh---hcceEEccCCcccccc
Q 012523 249 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLI-SALFRLVEPENGRILIDGLDICSMGLKDLR---TKLSIIPQEPTLFRGS 323 (461)
Q Consensus 249 ~l~~i-~l~i~~Ge~v~ivG~sGsGKSTll-~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r---~~i~~v~Q~~~lf~~t 323 (461)
.|+.+ .--+++|+.++|.||||||||||+ +++.+..++..+.+++++.. +..+++ ..+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 45655 556899999999999999999995 45555555545555665432 333332 335555554311
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCC-
Q 012523 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASI- 400 (461)
Q Consensus 324 i~~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~--~~p~iliLDEpts~L- 400 (461)
..|+....... ..+ + ..+. .+....+. +....+....++.++ .+|+++++|++++-+
T Consensus 83 -~~~l~~~~~~~-~~~-------~------~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 83 -KGMFAMVDAFT-AGI-------G------KSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp -HTSEEEEECST-TTT-------C------C--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred -CCcEEEEecch-hhc-------c------cccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 01221100000 000 0 0000 00000010 112333333344443 479999999999887
Q ss_pred -CHHHHHHHHHHHHHH--cCCcEEEEEccCchh--------h-hhcCEEEEEeC
Q 012523 401 -DSATDAILQRIIREE--FPGSTVITIAHRVPT--------I-TDSDMVMVLSY 442 (461)
Q Consensus 401 -D~~~~~~i~~~l~~~--~~~~tvi~itH~~~~--------~-~~~d~i~vl~~ 442 (461)
|+.........+.+. ..++|+++++|.... + ..||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 543333333333332 247899999997654 2 44899999964
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.97 E-value=1.3e-09 Score=109.12 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=83.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE-EECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY 334 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~ 334 (461)
-+++|+.+.|.||+|||||||+..++.......|.+ +++... ..+. .+.+++++-+++ +....+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEecC-
Confidence 478999999999999999999877775443333443 344321 1111 112223322211 110000
Q ss_pred CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcC--CCEEEEeCCCCCC----------CH
Q 012523 335 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR--NRILILDEATASI----------DS 402 (461)
Q Consensus 335 ~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~--p~iliLDEpts~L----------D~ 402 (461)
.+. .|-+.+++++.++ |+++|+||+++.+ |+
T Consensus 122 -----------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 122 -----------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp -----------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred -----------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 011 2344577877765 9999999999988 32
Q ss_pred ---HHHHHHHHHHHHH-----cCCcEEEEEccCch----------------hhhh-cCEEEEEeCCEEEEccc
Q 012523 403 ---ATDAILQRIIREE-----FPGSTVITIAHRVP----------------TITD-SDMVMVLSYGSFSFNNV 450 (461)
Q Consensus 403 ---~~~~~i~~~l~~~-----~~~~tvi~itH~~~----------------~~~~-~d~i~vl~~G~i~~~~~ 450 (461)
...+.+.+.++++ ..++|+|+++|-.. .+++ ||.++.+..+++...|.
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1112233333332 23789999999543 2444 89999998887765554
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.95 E-value=5.3e-11 Score=127.77 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=102.9
Q ss_pred CccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCc-eEEEECCEeCCCCCHHHHhhcceEEccCC--------
Q 012523 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEP-------- 317 (461)
Q Consensus 247 ~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-------- 317 (461)
..+++++++.+++|+.++|+||||+|||||+++|++++++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999987 8888888766543 34578877644
Q ss_pred --------------ccc-cccHHhhcCCCCC-CCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 012523 318 --------------TLF-RGSVRTNLDPLGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (461)
Q Consensus 318 --------------~lf-~~ti~~Nl~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lA 381 (461)
..| ..++.+|+..... .....+.. .......+....+. ... .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~L~G~~~----~~~-~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGALLGDVR----HDP-FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHHHHCEEC----CCC-C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHhcCceEE----ech-hhcCCccccccccccCc
Confidence 112 1244445432110 00000000 00111122221111 111 11245899999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 012523 382 RVLLKRNRILILDEATASIDSATDAILQRIIRE 414 (461)
Q Consensus 382 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 414 (461)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999999875
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.90 E-value=2.3e-12 Score=122.94 Aligned_cols=138 Identities=18% Similarity=0.119 Sum_probs=95.2
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
.+++++.+.|.. +.+++++++++++| ++|+||||||||||++++++... .|.+.++|.++........++.++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 456677766642 35899999999999 99999999999999999999875 7899999877644333444566788
Q ss_pred EccCCc-ccc-ccHHhhcC-CCCCC------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 313 IPQEPT-LFR-GSVRTNLD-PLGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 313 v~Q~~~-lf~-~ti~~Nl~-~~~~~------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
++|+.. .++ -++.||+. +.... ..++..+. +..++. .|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll~---------------~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV---------------EMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHHH---------------HHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHHH---------------HHhCCCCCCCEEEEE
Confidence 888764 332 35666663 21110 11111111 112222 368999999999999
Q ss_pred hhcCCCEEEEeCCCC
Q 012523 384 LLKRNRILILDEATA 398 (461)
Q Consensus 384 l~~~p~iliLDEpts 398 (461)
+..+|++ +|++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999986 788764
No 166
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.88 E-value=8.4e-11 Score=122.66 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=89.8
Q ss_pred ceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc--CCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcC
Q 012523 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (461)
Q Consensus 252 ~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g--l~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~ 329 (461)
.+++++.++..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+. .-|+++. ++.+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecCHH
Confidence 4788999999999999999999999999876 6677778888877776643322221 1122221 1111110
Q ss_pred CCC---CCCHHHHH---HHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHH----------HHHHHhhcCCC-EEE
Q 012523 330 PLG---MYSDNEIW---EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF----------CLGRVLLKRNR-ILI 392 (461)
Q Consensus 330 ~~~---~~~~~~~~---~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl----------~lARal~~~p~-ili 392 (461)
... ....+++. +.++..++.++- +|+..+. ..+|+||+|+. ++|+++...|. +++
T Consensus 231 ~a~~~L~~~~~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 231 DAANALRWCVNEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 000 00001111 122222211100 0111110 13577777652 35677778898 788
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---HH-c-CCcEEEEEccCch
Q 012523 393 LDEATASIDSATDAILQRIIR---EE-F-PGSTVITIAHRVP 429 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~---~~-~-~~~tvi~itH~~~ 429 (461)
+||+++.+|... ..+.+.+. +. + .+.++|++|||++
T Consensus 303 IDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999887422 22333332 22 2 2789999999997
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.88 E-value=2e-09 Score=111.47 Aligned_cols=177 Identities=17% Similarity=0.197 Sum_probs=107.7
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce-EEEECCEeCCCCCHHHHhhcc-eEEccCCccccccHH
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKL-SIIPQEPTLFRGSVR 325 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G-~i~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~ti~ 325 (461)
+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .+.+-+. +.+...+.+++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~------~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN------A- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC------H-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC------H-
Confidence 368888878999999999999999999999999887766445 5665442 34555554442 1111100 0
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCCCH-
Q 012523 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASIDS- 402 (461)
Q Consensus 326 ~Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~--~~p~iliLDEpts~LD~- 402 (461)
+.+. .+..++++..+..+.. +.+...|- .+ .....+|.+|.+ +.+|.+. .+|+++++|+++.-.++
T Consensus 261 ~~l~-~g~l~~~~~~~~~~a~---~~l~~~~l----~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 261 QNLR-TGKLTPEDWGKLTMAM---GSLSNAGI----YI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp HHHH-TSCCCHHHHHHHHHHH---HHHHSSCE----EE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred HHHh-cCCCCHHHHHHHHHHH---HHHhcCCE----EE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence 1111 1123444433222221 12222221 11 123468999876 5677776 57999999999987742
Q ss_pred -------HHHHHHHHHHHHHc--CCcEEEEEcc---------C--ch--------hhhh-cCEEEEEeCCEE
Q 012523 403 -------ATDAILQRIIREEF--PGSTVITIAH---------R--VP--------TITD-SDMVMVLSYGSF 445 (461)
Q Consensus 403 -------~~~~~i~~~l~~~~--~~~tvi~itH---------~--~~--------~~~~-~d~i~vl~~G~i 445 (461)
..-..+.+.|+... .+++||+++| + +. .+++ ||.|++|+.++.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 12245555666543 3789999999 1 32 3444 999999987654
No 168
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.87 E-value=1.2e-09 Score=118.45 Aligned_cols=75 Identities=25% Similarity=0.222 Sum_probs=64.4
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC--CceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcC
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~ 329 (461)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|.+.++..++..|+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 456789999999999999999999999977665 67988 7899999999988899999999999888888888874
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.78 E-value=7e-11 Score=119.19 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=86.8
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhh
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 327 (461)
.+++++++.+++|+.++|+||+|||||||+++|+|. .+|.+..-+ . +...++..+++++|...+| .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 489999999999999999999999999999999986 367776511 1 1122334588889987643 233
Q ss_pred cCCCCC----CC-HHHHHHHHHHccHHHHHHhC-CCcccc-------------cccCCCCCCChhHHHHHHHHHHhhcCC
Q 012523 328 LDPLGM----YS-DNEIWEAMEKCQLKATISRL-PMLLDS-------------SVSDEGENWSVGQRQLFCLGRVLLKRN 388 (461)
Q Consensus 328 l~~~~~----~~-~~~~~~~~~~~~l~~~i~~l-~~gl~t-------------~~~~~g~~lSgGq~Qrl~lARal~~~p 388 (461)
+..... .. ...+. ....+.+.++.. +-..+| .+..+...+++|++||++.+.++..+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332111 10 01110 111222333210 000111 233455678999999999988889999
Q ss_pred CEEE-EeCCCC
Q 012523 389 RILI-LDEATA 398 (461)
Q Consensus 389 ~ili-LDEpts 398 (461)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9888 999886
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.78 E-value=3.1e-09 Score=97.02 Aligned_cols=37 Identities=32% Similarity=0.500 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCC-----C------CceEEEECCEeC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVE-----P------ENGRILIDGLDI 298 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~-----~------~~G~i~i~g~~i 298 (461)
+++|+|++|||||||++.++|... | ..|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 689999999999999999999742 3 368899999765
No 171
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.77 E-value=1.2e-09 Score=100.18 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=64.6
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC-------------CCceEEEECCEeCCCCCHHHHhhcceEEccCCccc
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~-------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 320 (461)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||++...++.+++++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 67787 699988888888888876 6888999
Q ss_pred cccHHhhcCCCCCCCHHHHHHHHH
Q 012523 321 RGSVRTNLDPLGMYSDNEIWEAME 344 (461)
Q Consensus 321 ~~ti~~Nl~~~~~~~~~~~~~~~~ 344 (461)
.+++.+|. ++ .+.+.+.++++
T Consensus 88 ~~~~~~n~-YG--t~~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGNM-FG--TKFETVHQIHK 108 (197)
T ss_dssp EEEETTEE-EE--EEHHHHHHHHH
T ss_pred hhhhhcee-cc--cchhhHHHHHh
Confidence 99999995 33 23444555444
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.72 E-value=1.6e-09 Score=97.92 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=51.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEE----------ECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRIL----------IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~----------i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
.+|++++|+||||||||||+++|++++++ ..|.|. ++|.+....+...+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999874 455554 35555555666666653 45777788888888
Q ss_pred hc
Q 012523 327 NL 328 (461)
Q Consensus 327 Nl 328 (461)
|.
T Consensus 80 n~ 81 (180)
T 1kgd_A 80 AM 81 (180)
T ss_dssp EE
T ss_pred cc
Confidence 84
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.64 E-value=4.3e-08 Score=101.71 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=75.1
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhh
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 327 (461)
..++++++.+++| +.|+||+|+|||||++.+++.... | ++.-+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHH
Confidence 3677888888877 899999999999999999973210 0 011111111
Q ss_pred cCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC---------
Q 012523 328 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA--------- 398 (461)
Q Consensus 328 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts--------- 398 (461)
... .+| .|++++|-.+++|....|.+|++||+.+
T Consensus 86 ~~~-------------------------------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VEL-------------------------------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTC-------------------------------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHH-------------------------------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 110 011 2678889999999999999999999943
Q ss_pred -CCCHHHHHHHHHHHHHH-----cCCcEEEEEccCchhh
Q 012523 399 -SIDSATDAILQRIIREE-----FPGSTVITIAHRVPTI 431 (461)
Q Consensus 399 -~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~~~~~ 431 (461)
+.|.+.++.+.+.+... ..+..+|.+||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 55665555555555432 1356888999998654
No 174
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.63 E-value=9.7e-09 Score=94.50 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=42.5
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhcC
Q 012523 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (461)
Q Consensus 253 i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~ 329 (461)
+--++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~ 64 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIE 64 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhh
Confidence 334678899999999999999999999999875 37889999988865 5554
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.62 E-value=3.2e-09 Score=101.19 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=35.5
Q ss_pred cEEEEeE-EEEeCCCCCccccceeEEeeC---CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 232 RIELEDL-KVRYRPNTPLVLKGITCTFKE---GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 232 ~i~~~~v-~~~y~~~~~~~l~~i~l~i~~---Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++++|+ +|+|++ ...+|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999998754
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.61 E-value=1.2e-08 Score=93.35 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 320 (461)
+++++|++++|+|||||||||++++|.+++.|+.| +.+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977666 222 22222211 11123478888876543
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.59 E-value=4.7e-09 Score=96.28 Aligned_cols=62 Identities=21% Similarity=0.138 Sum_probs=44.5
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccc
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 320 (461)
.++-++|++++|+|||||||||++++|++.+ |.+.++|.++... ....+...++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 3567889999999999999999999999987 8899999776421 112233578888876543
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.57 E-value=2.7e-08 Score=99.94 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCC-----------CCceEEEECCEeCCCCCHHHHhhcceEEccCCcc----ccccHH-
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVE-----------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL----FRGSVR- 325 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~-----------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~ti~- 325 (461)
+++|+|++|||||||++.|+|... |..|.+.++|.++. +....|++.+.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999876 67899999997652 22346666654431 222222
Q ss_pred ----hhcCCCCCCCHHH--HHHHHHHccHHHHHHhCC-Cccc-ccccCCCCCCChhHHHHHHHH----HHh-hcCCCEEE
Q 012523 326 ----TNLDPLGMYSDNE--IWEAMEKCQLKATISRLP-MLLD-SSVSDEGENWSVGQRQLFCLG----RVL-LKRNRILI 392 (461)
Q Consensus 326 ----~Nl~~~~~~~~~~--~~~~~~~~~l~~~i~~l~-~gl~-t~~~~~g~~lSgGq~Qrl~lA----Ral-~~~p~ili 392 (461)
+++.+.-+.++.. ..+..+. ..+.+..+. .+.. -.++...-.+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 2221111222111 1111111 112222211 0111 112333345688888988877 666 444454
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH
Q 012523 393 LDEATASIDSATDAILQRIIREE 415 (461)
Q Consensus 393 LDEpts~LD~~~~~~i~~~l~~~ 415 (461)
+|+|++|.+.-..+.+.|.+.
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHH
Confidence 799999998877777777653
No 179
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.57 E-value=1.5e-09 Score=99.57 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=45.6
Q ss_pred eEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE--EECCEeCC
Q 012523 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI--LIDGLDIC 299 (461)
Q Consensus 237 ~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i--~i~g~~i~ 299 (461)
|++..+. .....+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 4 ~~~~~~~--~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC--SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C--CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCccccc--ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4444442 2236788888899999999999999999999999999987 67888 88886553
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.50 E-value=3.2e-09 Score=110.79 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=93.1
Q ss_pred EEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceE
Q 012523 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (461)
Q Consensus 233 i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 312 (461)
.+++++...|.. +..++++++++++| +.|+||+|+|||||++++++... .|.+.++|.++.+.......+++..
T Consensus 41 ~~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 41 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 345555544532 34799999999999 99999999999999999999875 7889999988765444445566778
Q ss_pred EccCCc-cccc-cHHhhcCC-CCCC------CHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 012523 313 IPQEPT-LFRG-SVRTNLDP-LGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (461)
Q Consensus 313 v~Q~~~-lf~~-ti~~Nl~~-~~~~------~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARa 383 (461)
++|+.. ..+. .+.|++.. .... ..++..+.+ ..++. .+||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEE
Confidence 888764 2333 45667642 2111 122222221 12222 257788888888888
Q ss_pred hhcCCCEEEEeCCCC
Q 012523 384 LLKRNRILILDEATA 398 (461)
Q Consensus 384 l~~~p~iliLDEpts 398 (461)
...+|++ ||||.-
T Consensus 175 atn~p~~--LD~aLl 187 (499)
T 2dhr_A 175 ATNRPDI--LDPALL 187 (499)
T ss_dssp CCSCGGG--SCTTTS
T ss_pred ecCChhh--cCcccc
Confidence 8888886 788765
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.47 E-value=2.2e-08 Score=98.84 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=54.0
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCH----HHH-----hhcceEE-ccCC
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL-----RTKLSII-PQEP 317 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~~ 317 (461)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888889999999999999999999999999999999999998877654321 233 4567777 5543
No 182
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.41 E-value=3.3e-08 Score=88.85 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=47.5
Q ss_pred cceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCE--eCCCCC----HHHHhhcceEEccCCc
Q 012523 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL--DICSMG----LKDLRTKLSIIPQEPT 318 (461)
Q Consensus 251 ~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~--~i~~~~----~~~~r~~i~~v~Q~~~ 318 (461)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-... ....+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6889999999 99999999999999999999988877665432221 110000 0023456899999863
No 183
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.40 E-value=5e-08 Score=90.07 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=30.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCC-CceEEE
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRIL 292 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~-~~G~i~ 292 (461)
++|+.++|+|||||||||+++.|++.++| ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 58999999999999999999999999987 444443
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.38 E-value=3.2e-07 Score=91.93 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=35.4
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc--CCCCCceEEEECCE
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGL 296 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g--l~~~~~G~i~i~g~ 296 (461)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.+.-.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 37899999998 899999999999999999999 77887787654443
No 185
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.36 E-value=2.1e-08 Score=94.19 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=49.2
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCC------CHHH----HhhcceEEccCCcccc
Q 012523 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------GLKD----LRTKLSIIPQEPTLFR 321 (461)
Q Consensus 254 ~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf~ 321 (461)
+.+.++|++++|.|+|||||||++++|.++ .|+|.+++.+...+ .... .++.+++++|.+.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 335578999999999999999999999998 78899998875321 1111 2456889999876654
No 186
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.34 E-value=5.5e-07 Score=89.87 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=45.0
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE-EECCEeCCCCCHHHHhhcceEEccCCc
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPT 318 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 318 (461)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++++.... + ..+.+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhh
Confidence 378999999999999999999999999887777765 56664322 2 234566777666543
No 187
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.32 E-value=6.5e-07 Score=89.64 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHcCCcEEEEEc--cCch
Q 012523 368 ENWSVGQRQLFCLGRVLLKRNRILILD-EATASIDSATDAILQRIIREEFPGSTVITIA--HRVP 429 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p~iliLD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~~~ 429 (461)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 357899998876 55555677788999 9999999988777777777655578888888 7663
No 188
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=2.1e-07 Score=85.03 Aligned_cols=39 Identities=28% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 246 ~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
..++++|+||++++|+.++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999765
No 189
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.29 E-value=1.8e-07 Score=85.81 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh---hhcCEEEEEe
Q 012523 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI---TDSDMVMVLS 441 (461)
Q Consensus 371 SgGq~Qrl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~---~~~d~i~vl~ 441 (461)
+.|+.+|..+++.++.+|+.+-.+ ++.++|...+.+.+.+... .+.++|+-+|.+... +.||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678899999999988887643332 3345666666666555443 355888888877543 5599999885
No 190
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.27 E-value=7.7e-07 Score=97.90 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=51.5
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcC-CcEEEE-EccCchhhhh
Q 012523 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATA-SIDSATDAILQRIIREEFP-GSTVIT-IAHRVPTITD 433 (461)
Q Consensus 368 ~~lSgGq~Qrl~lARal~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~~~~~~~ 433 (461)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+....+ .+++++ +||+.+.+..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 3468999999999999999999999999997 8998776556666655554 356666 5898776543
No 191
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.19 E-value=8.4e-08 Score=101.28 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=48.9
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce-EEE-ECCEeCCC-------CCHH---HHhhcceEEccC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RIL-IDGLDICS-------MGLK---DLRTKLSIIPQE 316 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G-~i~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~ 316 (461)
.+++|++++|+|+||||||||+++|++.+.|++| ++. +||.++.+ ++.. ..++.+++++|+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999887 784 89976532 2222 244568888886
No 192
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.18 E-value=2.5e-06 Score=84.48 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=63.8
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccccHHhhc
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl 328 (461)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.+ .|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeC-------------
Confidence 4666655689999999999999999999887765432222222 22111
Q ss_pred CCCCCCCHHHHHHH----HHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCC
Q 012523 329 DPLGMYSDNEIWEA----MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASID 401 (461)
Q Consensus 329 ~~~~~~~~~~~~~~----~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~iliLDEpts~LD 401 (461)
+.+.+++..- .....+..... ..||.+++||++.|...+.+++++|.|+|..++|
T Consensus 83 ----Ems~~ql~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ----EMSAEQLALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ----SSCHHHHHHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ----CCCHHHHHHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1223332221 11122222211 2578888888888888888888888888865543
No 193
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.16 E-value=2.6e-07 Score=92.35 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=49.0
Q ss_pred cccEEEEeEEEEeCCCCCcccc--------------ceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 230 HGRIELEDLKVRYRPNTPLVLK--------------GITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~--------------~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+.+.|+||++.||.. +..|+ |+++.+.+|++++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4679999999999865 45888 899999999999999999999999999999875
No 194
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.15 E-value=3.7e-07 Score=83.63 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=40.0
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~ 302 (461)
..++|++++|+|+|||||||+++.|.+++++..|.+.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35789999999999999999999999999888999988766654433
No 195
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.15 E-value=2.2e-06 Score=87.72 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i 298 (461)
++.+++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4789999999999999999999999998889998866664
No 196
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.15 E-value=1.8e-06 Score=85.13 Aligned_cols=28 Identities=32% Similarity=0.297 Sum_probs=25.2
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++|+.+.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999887753
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.14 E-value=1.8e-06 Score=88.14 Aligned_cols=181 Identities=19% Similarity=0.112 Sum_probs=100.6
Q ss_pred EEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHH-HhhcceEE
Q 012523 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLSII 313 (461)
Q Consensus 235 ~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~-~r~~i~~v 313 (461)
.++++..|++.. ++++++ +|++++++|++||||||++..|++.+.+..|+|.+.+.|...-...+ ++.. +
T Consensus 79 ~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-~-- 149 (425)
T 2ffh_A 79 YEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-G-- 149 (425)
T ss_dssp HHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-H--
T ss_pred HHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-c--
Confidence 334555554321 567777 89999999999999999999999999999999999877764322111 1110 0
Q ss_pred ccCCccccccHHhhcCCC---CCCCHHHHHHHHHHccHHHHHHhC-CCcccccccCCCCCCC---hhHHHHHHHHHHhhc
Q 012523 314 PQEPTLFRGSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRL-PMLLDSSVSDEGENWS---VGQRQLFCLGRVLLK 386 (461)
Q Consensus 314 ~Q~~~lf~~ti~~Nl~~~---~~~~~~~~~~~~~~~~l~~~i~~l-~~gl~t~~~~~g~~lS---gGq~Qrl~lARal~~ 386 (461)
-..|+... ...+..++. .+.+..+ ..++|..+-+....++ .-..+...+++++..
T Consensus 150 ----------~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 150 ----------EKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ----------HHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ----------ccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 01222211 112223331 1122222 1456665544333332 245667778888866
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCch---------hhhh-cCEEEEEeCCEEEE
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP---------TITD-SDMVMVLSYGSFSF 447 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~---------~~~~-~d~i~vl~~G~i~~ 447 (461)
++-+|++| ++++.|.... .+.+... -+.+-+++|+--. .... .-.|..+-.|+-++
T Consensus 212 d~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~ 277 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPE 277 (425)
T ss_dssp SEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred ceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChh
Confidence 66677788 4556554321 1223322 2456677776321 1111 35677777776443
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.13 E-value=4.9e-07 Score=80.53 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=39.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhh-cceEEccC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KLSIIPQE 316 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~ 316 (461)
.+|++++|+|+|||||||+++.|++.+ |.+.+|+.++.. ...+++ .+|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 468999999999999999999999875 788999876643 222222 35555554
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.00 E-value=7.4e-07 Score=87.72 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=37.0
Q ss_pred ccccceeEEeeCCc------EEEEEcCCCCCHHHHHHHHccCCC--CCceEEE
Q 012523 248 LVLKGITCTFKEGT------RVGVVGRTGSGKTTLISALFRLVE--PENGRIL 292 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge------~v~ivG~sGsGKSTll~ll~gl~~--~~~G~i~ 292 (461)
..|++++..+.+++ ++||+|||||||||++++|.+++. |++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~ 126 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVE 126 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEE
Confidence 36777888887776 999999999999999999999987 4455543
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.00 E-value=9.7e-06 Score=81.08 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=33.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc----CCcEEEEEccCchhh
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEF----PGSTVITIAHRVPTI 431 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~ 431 (461)
.+|.++++||+... |+.....+.+.+.+.. .+.++|++||+++..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999876 8777777777765432 367889999988543
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=1.5e-06 Score=86.13 Aligned_cols=42 Identities=31% Similarity=0.324 Sum_probs=37.3
Q ss_pred ccccceeEEeeCCcE--EEEEcCCCCCHHHHHHHHccCCCCCce
Q 012523 248 LVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENG 289 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~--v~ivG~sGsGKSTll~ll~gl~~~~~G 289 (461)
.+++.++..+++|+. +.+.||+|+||||+++.+++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998765443
No 202
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.91 E-value=7e-06 Score=81.64 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=25.4
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++|+.+.|.||+|||||||+..++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988763
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.87 E-value=9.5e-05 Score=71.33 Aligned_cols=70 Identities=7% Similarity=-0.016 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHc-----CCcEEEEEccCchhh----
Q 012523 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSA----------TDAILQRIIREEF-----PGSTVITIAHRVPTI---- 431 (461)
Q Consensus 371 SgGq~Qrl~lARal~~~p~iliLDEpts~LD~~----------~~~~i~~~l~~~~-----~~~tvi~itH~~~~~---- 431 (461)
+++++.|-.++++...+|.+|++||+.+-.+.. ....+...+.... .+..+|.+|++++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777778888888899999999998766432 1223444444322 124567778886543
Q ss_pred -hhcCEEEEE
Q 012523 432 -TDSDMVMVL 440 (461)
Q Consensus 432 -~~~d~i~vl 440 (461)
+.+++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 346766554
No 204
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.85 E-value=2.6e-06 Score=94.11 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=29.2
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
+.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998754
No 205
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.85 E-value=2.5e-06 Score=90.19 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=49.1
Q ss_pred EEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEc
Q 012523 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (461)
Q Consensus 235 ~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 314 (461)
++++..+|. ...+++++++++ +|+.++++||||+|||||+++|++...+..|.|.++|......-....++.+|+.+
T Consensus 86 ~~~vk~~i~--~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~ 162 (543)
T 3m6a_A 86 LEKVKERIL--EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP 162 (543)
T ss_dssp CHHHHHHHH--HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred HHHHHHHHH--HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence 445555552 224678888888 89999999999999999999999999999999988875432111122345566666
Q ss_pred cCC
Q 012523 315 QEP 317 (461)
Q Consensus 315 Q~~ 317 (461)
|..
T Consensus 163 ~~~ 165 (543)
T 3m6a_A 163 GRI 165 (543)
T ss_dssp -CH
T ss_pred hHH
Confidence 643
No 206
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.83 E-value=4e-06 Score=81.89 Aligned_cols=144 Identities=17% Similarity=0.105 Sum_probs=72.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEEC-CEeCCCCCHHHHhhcceEEccCCccccccHHhhcCCCCCCCHH
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID-GLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 337 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~~~~ 337 (461)
++.+++|+|++|+|||||++.|+|.- +.+. +.+ ....++..++++++..-+ ++.| +++. ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i--~~iD--TpG~--~~- 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQA--IYVD--TPGL--HM- 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEE--EEES--SSSC--CH-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeE--EEEE--CcCC--Cc-
Confidence 34589999999999999999999863 2221 111 111233467777654311 1111 1111 10
Q ss_pred HHHHHHHHccHHHHHHhCCC---cccccc--cCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCCCHHH-HHHHH
Q 012523 338 EIWEAMEKCQLKATISRLPM---LLDSSV--SDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASIDSAT-DAILQ 409 (461)
Q Consensus 338 ~~~~~~~~~~l~~~i~~l~~---gl~t~~--~~~g~~lSgGq~Qrl~lARal~--~~p~iliLDEpts~LD~~~-~~~i~ 409 (461)
+....+.. .+...... ..|..+ -+... +|+|++ .+++++. ..|.++++ +.+|... ...+.
T Consensus 69 ~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 69 EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 11111111 11111111 122211 12223 898886 4566665 67888887 6777755 44555
Q ss_pred HHHHHHcC--C--cEEEEEccCchhhh
Q 012523 410 RIIREEFP--G--STVITIAHRVPTIT 432 (461)
Q Consensus 410 ~~l~~~~~--~--~tvi~itH~~~~~~ 432 (461)
+.+.+..+ + .++.+.+|.-.-+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 55554432 2 35556667655443
No 207
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.81 E-value=1.8e-05 Score=81.40 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHc-CCcEEEEEccCc
Q 012523 387 RNRILILDEATASIDS-ATDAILQRIIREEF-PGSTVITIAHRV 428 (461)
Q Consensus 387 ~p~iliLDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~~ 428 (461)
+|++|++||+..-.+. .+...+...+.... .++.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999877664 56677777777643 478899999984
No 208
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.80 E-value=0.00011 Score=68.64 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCCCce
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEPENG 289 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~~~G 289 (461)
+++|+|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999987766554
No 209
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.78 E-value=7.8e-06 Score=74.27 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=40.0
Q ss_pred EEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC--------CCCCceEEEECCEeC
Q 012523 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--------VEPENGRILIDGLDI 298 (461)
Q Consensus 239 ~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl--------~~~~~G~i~i~g~~i 298 (461)
++.|++-. .++++++++.+++ +++++|++|+|||||++.+.+- ..++.+.+.++|..+
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 45666543 4899999998887 5899999999999999999872 233557777777543
No 210
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.76 E-value=3.7e-06 Score=75.13 Aligned_cols=40 Identities=35% Similarity=0.440 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCCCce--EEEECCEeC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDI 298 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G--~i~i~g~~i 298 (461)
++|+.++|+|++||||||+.+.|.+.+++ .| .+.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998766 56 666776444
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.76 E-value=1.2e-05 Score=82.57 Aligned_cols=61 Identities=28% Similarity=0.494 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCC------------CCceEEEECCEeCCCCCHHHHhhcceEEccCCcccc
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 321 (461)
-+++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 4799999999999999999999853 678999999987654554444555555556555553
No 212
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.75 E-value=3e-06 Score=84.20 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=45.5
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeC
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i 298 (461)
.+++++++++++|.+++++|++|+||||+++.|++.+.+..|++.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 378899999999999999999999999999999999988888887766554
No 213
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.70 E-value=1.2e-05 Score=71.16 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g 295 (461)
.|+.++|+|++||||||++++|++.+.+ ..+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998764 56664
No 214
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.70 E-value=9.8e-06 Score=75.87 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=32.5
Q ss_pred ccceeEEee---CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEEC
Q 012523 250 LKGITCTFK---EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 294 (461)
Q Consensus 250 l~~i~l~i~---~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~ 294 (461)
|++.|++++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 555666665 8999999999999999999999999987 6666543
No 215
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.69 E-value=1.7e-05 Score=78.97 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPE 287 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~ 287 (461)
.++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
No 216
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.66 E-value=0.00015 Score=71.06 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=28.6
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~ 281 (461)
.|+++.--+++|+.+.|.|++|+|||||+.-++
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 567766568999999999999999999987766
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.66 E-value=5.3e-06 Score=76.37 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=37.7
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce--EEEECCEe
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLD 297 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G--~i~i~g~~ 297 (461)
+.+++|..++|+|++||||||+.+.|.+.++|..| .+.+||.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45678999999999999999999999999988888 88887643
No 218
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.65 E-value=1.3e-05 Score=75.27 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHc---cCCCCCceEEE--------ECCEeCCCCC-HHHHhhcceEEc------cCCcccc
Q 012523 260 GTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDICSMG-LKDLRTKLSIIP------QEPTLFR 321 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~---gl~~~~~G~i~--------i~g~~i~~~~-~~~~r~~i~~v~------Q~~~lf~ 321 (461)
+-+++|.||+||||||+.+.|+ |+...+.|.++ -.|.+..+.. ..++...+.+.+ |..+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 65555666662 3455554422 234455566655 2333444
Q ss_pred ccHHhhcC
Q 012523 322 GSVRTNLD 329 (461)
Q Consensus 322 ~ti~~Nl~ 329 (461)
..+.++|.
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 45555553
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.63 E-value=8.5e-06 Score=74.53 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.4
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
...+|..++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
No 220
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.62 E-value=1.1e-05 Score=80.52 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=36.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~ 299 (461)
+++.+++|+|++|||||||++.|+|.+.+.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357889999999999999999999999888888888776543
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.59 E-value=7.5e-05 Score=72.38 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCCceEE
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i 291 (461)
...+.++||+|+||||+++.+.+...+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999887665543
No 222
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.58 E-value=5.2e-05 Score=67.07 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++|.+++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=0.00024 Score=67.02 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=24.7
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
.++++++..++| +.|+||+|+||||+++.+++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 344455555544 99999999999999999998764
No 224
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.57 E-value=4.8e-05 Score=71.11 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=69.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCCCCHHHHhhcceEEccCCccccc-cHHhhcCCC-C-C
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPL-G-M 333 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Nl~~~-~-~ 333 (461)
+.+|+.+.++|||||||||++.+.+.......|. ...+.++.+.|..... ++.+|+... . .
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4579999999999999999888664211111110 1245666676654322 444554210 0 0
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCCcccccccC----CCCC---CChhHHHHHHHHHHhhcCCCEEEEeCCCC-CCCHHHH
Q 012523 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSD----EGEN---WSVGQRQLFCLGRVLLKRNRILILDEATA-SIDSATD 405 (461)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~----~g~~---lSgGq~Qrl~lARal~~~p~iliLDEpts-~LD~~~~ 405 (461)
.. ...|+.....+ .... .+.|.-.+. .+.-+++-+++|+||+-. ++|....
T Consensus 137 ~~-------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 137 PG-------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp TT-------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred cC-------------------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHH
Confidence 00 00111110000 0000 244655444 344688999999999976 5776655
Q ss_pred HHHHHHHHHHcCC-cEEEEE-ccCch
Q 012523 406 AILQRIIREEFPG-STVITI-AHRVP 429 (461)
Q Consensus 406 ~~i~~~l~~~~~~-~tvi~i-tH~~~ 429 (461)
....+.+....++ +++++. |...+
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCH
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHH
Confidence 4344444444444 344444 34433
No 225
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.56 E-value=5.2e-05 Score=68.16 Aligned_cols=49 Identities=27% Similarity=0.410 Sum_probs=28.9
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc----CC----CCCceEEEECCEeC
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LV----EPENGRILIDGLDI 298 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g----l~----~~~~G~i~i~g~~i 298 (461)
++++++++.++. +++++|++|+|||||++.+.+ .+ .++.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 688999988776 789999999999999999997 22 23456666776433
No 226
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.55 E-value=6.7e-05 Score=73.56 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
++..+.|.||+|+|||||++.+.+...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999986643
No 227
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=1.7e-05 Score=78.34 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=33.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchh
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPT 430 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 430 (461)
+++++++|| ...+++.....+.+.+.+...+..+|++++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888888888876555667778877653
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.51 E-value=0.00057 Score=68.12 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=27.5
Q ss_pred cccceeEE---eeCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 249 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 249 ~l~~i~l~---i~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
.|+.+ +. +++|+.+.|.||+|+|||||..-++.-
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45554 33 789999999999999999998777643
No 229
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.49 E-value=5.8e-05 Score=65.66 Aligned_cols=30 Identities=37% Similarity=0.687 Sum_probs=24.4
Q ss_pred cceeEEeeCCcEEEEEcCCCCCHHHHHHHHc
Q 012523 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (461)
Q Consensus 251 ~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~ 281 (461)
++..+++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566554 89999999999999999987
No 230
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.43 E-value=0.00032 Score=68.11 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=27.4
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
+.++++..+.|.||+|+||||+++.+++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3568899999999999999999999998753
No 231
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=8.6e-05 Score=67.36 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999876543
No 232
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=0.00035 Score=66.78 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.7
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++++..+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4667889999999999999999998764
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=9.2e-05 Score=66.43 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.5
Q ss_pred ceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 252 ~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 234
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.31 E-value=2.6e-05 Score=75.87 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=41.2
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCCC
Q 012523 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (461)
Q Consensus 253 i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~~ 300 (461)
++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 667766 99999999999999999999999999888999987776543
No 235
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.30 E-value=6.1e-05 Score=69.65 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
++..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999986554
No 236
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.30 E-value=1.2e-07 Score=90.98 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=65.0
Q ss_pred hCCCcccccccCCCCCCChhHHHHHHHHHHhhcCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHHcCCcEEE
Q 012523 354 RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI--LILDEATASIDSAT---------DAILQRIIREEFPGSTVI 422 (461)
Q Consensus 354 ~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~~~p~i--liLDEpts~LD~~~---------~~~i~~~l~~~~~~~tvi 422 (461)
.++.++++.+++++..+|+| ||++++|+++.+|++ +|+||+|+++|... +...+++++...+++|.+
T Consensus 157 ~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~ 234 (261)
T 2eyu_A 157 VLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITL 234 (261)
T ss_dssp HHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCH
T ss_pred HHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCH
Confidence 45678999999999999999 999999999999999 99999999999863 346777787778899999
Q ss_pred EEccCch
Q 012523 423 TIAHRVP 429 (461)
Q Consensus 423 ~itH~~~ 429 (461)
.++||++
T Consensus 235 ~~a~r~~ 241 (261)
T 2eyu_A 235 EDAMEAS 241 (261)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999976
No 237
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.28 E-value=0.00064 Score=58.39 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=30.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCc
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRV 428 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 428 (461)
+..+|++||. ..|++.....+.+.+.....+..+|.+|++.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 3468999998 4678888888888886554456677777753
No 238
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.25 E-value=0.00029 Score=64.53 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=33.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 012523 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI 431 (461)
Q Consensus 386 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 431 (461)
.+|.++++||+-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999765 78887777877776644567788888886544
No 239
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.25 E-value=0.00015 Score=73.21 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=34.2
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccC-----------CCCCceEEEECCE
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRL-----------VEPENGRILIDGL 296 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl-----------~~~~~G~i~i~g~ 296 (461)
.+..|.+++|+|++|+|||||++.|+|. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567889999999999999999999998 7788899887763
No 240
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.23 E-value=0.00031 Score=61.35 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
-+++++|++|+|||||++.++|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3699999999999999999998653
No 241
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.23 E-value=0.00041 Score=71.52 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 012523 372 VGQRQLFCLGRVLLKRNRILILDE-ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI 431 (461)
Q Consensus 372 gGq~Qrl~lARal~~~p~iliLDE-pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 431 (461)
+.|.+....+...+++++++|+.. ++.++.... ..+.+.+++ .++.++++.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 357777888888889999777654 444555544 456566654 477888888877654
No 242
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.23 E-value=8.2e-05 Score=66.68 Aligned_cols=39 Identities=38% Similarity=0.612 Sum_probs=32.7
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE-EECC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDG 295 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i-~i~g 295 (461)
.++|..+.++|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45789999999999999999999999887766765 4444
No 243
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.21 E-value=3.7e-05 Score=76.97 Aligned_cols=58 Identities=31% Similarity=0.335 Sum_probs=36.0
Q ss_pred cccEEEEeEEEEeCCCCCccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECC
Q 012523 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (461)
Q Consensus 230 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g 295 (461)
.+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 456889999888843 34789999876 99999999999999999987665555544333
No 244
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.18 E-value=0.00022 Score=63.27 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++++|++|+|||||++.+++-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999984
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.10 E-value=0.00011 Score=69.70 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=35.8
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeC
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i 298 (461)
+++.+ ..+++..+.++|++||||||+.+.|.+.+. .|.+.+||..+
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 33333 566788999999999999999999998765 35677887544
No 246
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.06 E-value=0.00029 Score=62.72 Aligned_cols=26 Identities=42% Similarity=0.730 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEPE 287 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~~ 287 (461)
+++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.06 E-value=0.0001 Score=66.99 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i 298 (461)
..+++|+|++||||||+.+.|.+.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998765 4456665443
No 248
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.05 E-value=0.00032 Score=64.11 Aligned_cols=29 Identities=34% Similarity=0.621 Sum_probs=23.7
Q ss_pred ceeEEeeCCcEEEEEcCCCCCHHHHHHHHc
Q 012523 252 GITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (461)
Q Consensus 252 ~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~ 281 (461)
+.++++.+ ...+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44556655 489999999999999999875
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.05 E-value=0.00041 Score=67.96 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.4
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
-+++|+.+.|.||+|||||||..-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.02 E-value=0.00021 Score=63.83 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCC---ceEEEECCEe
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLD 297 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~---~G~i~i~g~~ 297 (461)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3679999999999999999999876543 4777777654
No 251
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.99 E-value=0.00028 Score=63.99 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.97 E-value=0.00021 Score=64.55 Aligned_cols=45 Identities=27% Similarity=0.587 Sum_probs=31.0
Q ss_pred EEEEcCCCCCHHHHHHHHccCCC-------------CCceEEEECCEeCCCCCHHHHhhc
Q 012523 263 VGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTK 309 (461)
Q Consensus 263 v~ivG~sGsGKSTll~ll~gl~~-------------~~~G~i~i~g~~i~~~~~~~~r~~ 309 (461)
+.|+||||||||||++.|+.-++ |..|++ ||++..-.+.+++.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHH
Confidence 78999999999999999875442 334543 6666555555555443
No 253
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.85 E-value=0.0023 Score=63.30 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=29.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g 295 (461)
.+|..+.|.||+|+||||+++.++........-+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45678999999999999999999987764334444443
No 254
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.83 E-value=0.005 Score=62.84 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEE
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 293 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i 293 (461)
++.+++++|++||||||++.-|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45789999999999999999999877654445543
No 255
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.83 E-value=0.0052 Score=57.53 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++..-+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999998743
No 256
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.82 E-value=0.00049 Score=61.26 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
.+|..++++|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
No 257
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.81 E-value=0.00045 Score=69.30 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhhhcCEEEEE
Q 012523 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl 440 (461)
+.+|+++|..+|+++++|||+ |+++-. .+++....+.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 776533 3444444578999999998766667887655
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.81 E-value=0.00019 Score=71.22 Aligned_cols=37 Identities=32% Similarity=0.500 Sum_probs=33.4
Q ss_pred ccccceeEEeeCCcE--EEEEcCCCCCHHHHHHHHccCC
Q 012523 248 LVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~--v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378889999999999 9999999999999999998754
No 259
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.80 E-value=0.00044 Score=69.66 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=43.1
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHcC-CcEEEEEccCchhh-------------hhcCEEEEEeCC
Q 012523 387 RNRILILDEATASID---SATDAILQRIIREEFP-GSTVITIAHRVPTI-------------TDSDMVMVLSYG 443 (461)
Q Consensus 387 ~p~iliLDEpts~LD---~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~-------------~~~d~i~vl~~G 443 (461)
.|.++++||+-.-++ +.....+.+.++..++ +..++++||+++.+ .+|+..+++...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 478999999988885 5667778888877554 78999999999755 346666666543
No 260
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.77 E-value=0.0012 Score=58.75 Aligned_cols=36 Identities=39% Similarity=0.753 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCHHHHHHHHc-cC----CCCCce----EEEECCEe
Q 012523 262 RVGVVGRTGSGKTTLISALF-RL----VEPENG----RILIDGLD 297 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~-gl----~~~~~G----~i~i~g~~ 297 (461)
+++++|++|+|||||++.++ +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 59999999999999997554 44 567766 66677644
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.76 E-value=0.00074 Score=59.61 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999997654
No 262
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.74 E-value=0.013 Score=56.27 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+..+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888665
No 263
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.0022 Score=57.77 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchh
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPT 430 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 430 (461)
++.++++||. ..+++.....+.+.+.....+..+|++|++...
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 6789999996 446777777788887765555667777777653
No 264
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.70 E-value=0.0048 Score=61.26 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.68 E-value=0.0079 Score=60.02 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
-+++|+.+.|.||+|+|||||..-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999876653
No 266
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.67 E-value=0.0007 Score=60.99 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCE
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 296 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~ 296 (461)
..+++|+|++||||||+.+.|... |-..+|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 457999999999999999999985 65666653
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.65 E-value=0.00083 Score=62.59 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
-++|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999999986
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.65 E-value=0.00076 Score=60.71 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.64 E-value=0.0009 Score=58.46 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 270
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.64 E-value=0.0009 Score=66.35 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
..+..+.|.||+|+||||+++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999987653
No 271
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.61 E-value=0.0011 Score=58.88 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
.-+++++|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999976
No 272
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.58 E-value=0.00027 Score=64.43 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEPE 287 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~~ 287 (461)
.++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887654
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.57 E-value=0.0011 Score=58.87 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+|..+.|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
No 274
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.56 E-value=0.0015 Score=65.09 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHcc-----------CCCCCceEEEECC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFR-----------LVEPENGRILIDG 295 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~g-----------l~~~~~G~i~i~g 295 (461)
|-+++|||.+|+|||||++.|++ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 3467788887765
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.52 E-value=0.0013 Score=58.54 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997544
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.50 E-value=0.0012 Score=63.68 Aligned_cols=35 Identities=40% Similarity=0.520 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g 295 (461)
+|..+.|+|||||||||+.+.|+.-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999986543 35677765
No 277
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.49 E-value=0.0012 Score=58.89 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++|..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
No 278
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.49 E-value=0.0011 Score=64.51 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=36.2
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc----CCCCCceEEEECC
Q 012523 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LVEPENGRILIDG 295 (461)
Q Consensus 248 ~~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g----l~~~~~G~i~i~g 295 (461)
..+++..+.+ .|.-++|.|+||+||||+...|.+ +...+...|...+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 3677877777 799999999999999999998886 4444555555433
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.48 E-value=0.0013 Score=57.19 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 012523 262 RVGVVGRTGSGKTTLISAL 280 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll 280 (461)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.46 E-value=0.0015 Score=58.90 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+|..++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999876
No 281
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.46 E-value=0.011 Score=57.80 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++.-+.|.||+|+|||++++.+++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999765
No 282
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.45 E-value=0.0043 Score=63.57 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=83.3
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCce-EEE-ECCEeCCCCCHHHHhhcceEEccCCccccccHHh
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RIL-IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G-~i~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 326 (461)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+. +.. +.+..++..++- .+...+-...++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~--~~~~~i~~~~l~~ 262 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMM--CSEARIDMNRVRL 262 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHH--HHHTTCCTTTCCG
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHH--HHHcCCCHHHHhC
Confidence 46666655899999999999999999998877754432222 333 332 345555554421 0000000001111
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCCCH--
Q 012523 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASIDS-- 402 (461)
Q Consensus 327 Nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gl~t~~~~~g~~lSgGq~Qrl~lARal~--~~p~iliLDEpts~LD~-- 402 (461)
+..++++..+..+.+ +.+...|-- +. ....+|..+ ..+.+|.+. .+++++++|..+.-.+.
T Consensus 263 -----g~l~~~~~~~~~~a~---~~l~~~~l~----i~-d~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~~~ 327 (444)
T 2q6t_A 263 -----GQLTDRDFSRLVDVA---SRLSEAPIY----ID-DTPDLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGPGS 327 (444)
T ss_dssp -----GGCCHHHHHHHHHHH---HHHHTSCEE----EE-CCTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC--
T ss_pred -----CCCCHHHHHHHHHHH---HHHhcCCEE----EE-CCCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCCcC
Confidence 123444433222221 122222211 11 123456554 455666665 47999999998765432
Q ss_pred ----HH-H---HHHHHHHHHHcCCcEEEEEc
Q 012523 403 ----AT-D---AILQRIIREEFPGSTVITIA 425 (461)
Q Consensus 403 ----~~-~---~~i~~~l~~~~~~~tvi~it 425 (461)
.. . ..+.+.|+...+..-+-++.
T Consensus 328 ~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 358 (444)
T 2q6t_A 328 GKSGENRQQEIAAISRGLKALARELGIPIIA 358 (444)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 11 1 35556666666677888884
No 283
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.45 E-value=0.0057 Score=52.23 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=28.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccC
Q 012523 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHR 427 (461)
Q Consensus 388 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 427 (461)
..+|++||.- .++++....+.+.+.+.. .+..+|.+|++
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4689999964 578888888888887753 34567777664
No 284
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.41 E-value=0.0015 Score=59.84 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
++-+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 285
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.39 E-value=0.0023 Score=63.92 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=25.9
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHc
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~ 281 (461)
+++..+++.+ ...+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4566777766 589999999999999999876
No 286
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.32 E-value=0.0017 Score=57.57 Aligned_cols=27 Identities=30% Similarity=0.214 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999998443
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.32 E-value=0.014 Score=68.75 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=30.3
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE-EECC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDG 295 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i-~i~g 295 (461)
+++|+.+.|.||+|+|||||+..++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999998876554433433 3344
No 288
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.31 E-value=0.0046 Score=60.44 Aligned_cols=28 Identities=36% Similarity=0.287 Sum_probs=24.9
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 255 CTFKEGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 255 l~i~~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
--+++|..+.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999998874
No 289
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.31 E-value=0.016 Score=58.79 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
-+++..+.++|++||||||+.+.|+.-+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999998643
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.29 E-value=0.0019 Score=57.69 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++..++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 291
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.28 E-value=0.0021 Score=58.32 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
++|..++|.|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 292
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.27 E-value=0.0038 Score=57.85 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccC-----------chhhhhcCEEEEEe
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHR-----------VPTITDSDMVMVLS 441 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------~~~~~~~d~i~vl~ 441 (461)
+++++++||.-- ++.+.-+.+ +.+.+ .+.++|++.|+ .+.+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432222 33333 37899999993 23345699998763
No 293
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.27 E-value=0.0026 Score=57.17 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999764
No 294
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.25 E-value=0.0018 Score=61.21 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++|+||+||||||+.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.24 E-value=0.0023 Score=57.89 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
+|..++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999876654
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.23 E-value=0.0023 Score=58.14 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++|..++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998543
No 297
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.20 E-value=0.009 Score=58.97 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchh
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPT 430 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 430 (461)
+++++++||+- .++......+.+.+++...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999964 47777777788888764445667778887653
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.17 E-value=0.002 Score=56.82 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.16 E-value=0.0025 Score=55.98 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHcc
Q 012523 261 TRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~g 282 (461)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 300
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.14 E-value=0.0054 Score=62.86 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=26.9
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555443589999999999999999999766553
No 301
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.0028 Score=56.39 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999997543
No 302
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.11 E-value=0.00019 Score=71.79 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=49.9
Q ss_pred CCChhHHHHHHHHHHhh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhhhcCE
Q 012523 369 NWSVGQRQLFCLGRVLL-KRNRILILDE---AT------ASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDM 436 (461)
Q Consensus 369 ~lSgGq~Qrl~lARal~-~~p~iliLDE---pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~ 436 (461)
.+|+|++|+..+++++. .+|++++||| |+ +++|+.....+.+.+++..+ +.++++++|.-..-+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 35677788888888875 5999999999 65 58999998999999876543 7899999986433333555
Q ss_pred EEEE
Q 012523 437 VMVL 440 (461)
Q Consensus 437 i~vl 440 (461)
+..+
T Consensus 338 i~~i 341 (365)
T 1lw7_A 338 KAVI 341 (365)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 303
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.08 E-value=0.0022 Score=56.68 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=18.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++..+.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357889999999999999999998544
No 304
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.0051 Score=53.02 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 305
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.06 E-value=0.0031 Score=54.33 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
+++++|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 689999999999999999987543
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.05 E-value=0.0024 Score=57.23 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.4
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++++.+++|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998654
No 307
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.04 E-value=0.0028 Score=60.29 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
+++++|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998754
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.01 E-value=0.0019 Score=57.32 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCCCc---eEEEECC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDG 295 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~~~---G~i~i~g 295 (461)
..++|+|++|||||||+..|++.+.... |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999998765432 4455443
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.99 E-value=0.0032 Score=55.89 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
.+.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 310
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.95 E-value=0.0033 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 311
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.93 E-value=0.0039 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.91 E-value=0.0042 Score=56.93 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++|-.+.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998654
No 313
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.91 E-value=0.0046 Score=58.51 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 314
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0035 Score=55.62 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
.-+++++|++|||||||++.+.+-..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34799999999999999999987643
No 315
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.89 E-value=0.034 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
..+.|.||+|+||||+++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999998664
No 316
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.89 E-value=0.0038 Score=58.60 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
=+++|+|++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999854
No 317
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.88 E-value=0.011 Score=57.43 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHcCCcEEEEEccCchh
Q 012523 387 RNRILILDEATASID-SATDAILQRIIREEFPGSTVITIAHRVPT 430 (461)
Q Consensus 387 ~p~iliLDEpts~LD-~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 430 (461)
+++++++||.- .+. .+....+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 78999999984 344 56667777777776556788888888664
No 318
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.88 E-value=0.0018 Score=64.41 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+..+.|.||+|+||||+++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
No 319
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.87 E-value=0.0042 Score=53.60 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 320
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.87 E-value=0.0038 Score=53.45 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999874
No 321
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.86 E-value=0.0036 Score=53.43 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 322
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.86 E-value=0.0045 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 323
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.85 E-value=0.0037 Score=56.38 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 324
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.85 E-value=0.023 Score=56.24 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++.-+.|.||+|+||||+++.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455669999999999999999999764
No 325
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.85 E-value=0.0039 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998654
No 326
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.84 E-value=0.0042 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.84 E-value=0.0041 Score=56.66 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999996543
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.83 E-value=0.0044 Score=57.16 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998544
No 329
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.82 E-value=0.0052 Score=53.51 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999863
No 330
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.81 E-value=0.0041 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.80 E-value=0.0051 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+-.++|+|+.||||||+.+.|...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998644
No 332
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.79 E-value=0.0033 Score=62.80 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++|||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 333
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.79 E-value=0.0043 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 334
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.78 E-value=0.0041 Score=53.61 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 335
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.77 E-value=0.0044 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 336
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.77 E-value=0.0044 Score=53.24 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 337
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.77 E-value=0.0046 Score=58.93 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.|++--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987643
No 338
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.76 E-value=0.005 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
+.++|.|+.||||||+.+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 339
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.76 E-value=0.0044 Score=53.30 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 340
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.76 E-value=0.0044 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
--+++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 341
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.74 E-value=0.0046 Score=53.93 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|||||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988764
No 342
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.73 E-value=0.0028 Score=61.20 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998644
No 343
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.73 E-value=0.0049 Score=58.88 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
-+++++|++|||||||++.++|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999864
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.72 E-value=0.0051 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 345
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0089 Score=54.02 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998874
No 346
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.72 E-value=0.0046 Score=54.68 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
-+++++|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998754
No 347
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.72 E-value=0.0047 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 348
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.72 E-value=0.016 Score=63.34 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+.++||+|+|||++.+.+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999775
No 349
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.71 E-value=0.005 Score=56.16 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997544
No 350
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.71 E-value=0.0046 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.70 E-value=0.0042 Score=55.04 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 352
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.70 E-value=0.005 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
+++++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999987654
No 353
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.70 E-value=0.0045 Score=54.08 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.69 E-value=0.0052 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998554
No 355
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.66 E-value=0.0054 Score=55.44 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-.++|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56999999999999999999865
No 356
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.65 E-value=0.0055 Score=54.34 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997643
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.65 E-value=0.0047 Score=56.68 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 358
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.65 E-value=0.0052 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.64 E-value=0.0055 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 360
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.64 E-value=0.0052 Score=52.83 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 361
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.61 E-value=0.0046 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999974
No 362
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.60 E-value=0.0055 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 363
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.60 E-value=0.0055 Score=54.35 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 364
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.57 E-value=0.0065 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 365
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.57 E-value=0.0056 Score=54.37 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.56 E-value=0.0093 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 367
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.54 E-value=0.0058 Score=53.83 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.54 E-value=0.006 Score=52.33 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999974
No 369
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.53 E-value=0.0066 Score=56.84 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++-.++|.|++||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999997544
No 370
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.016 Score=55.73 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchh
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPT 430 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 430 (461)
+++++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 47899999963 45666666777777765556677888877653
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.52 E-value=0.0062 Score=57.19 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997643
No 372
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.52 E-value=0.0061 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHcc
Q 012523 260 GTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999975
No 373
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.50 E-value=0.0059 Score=53.04 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999984
No 374
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.49 E-value=0.008 Score=59.11 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567899999999999999999998764
No 375
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0065 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999753
No 376
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.45 E-value=0.0075 Score=57.02 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
++..+.|+|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 377
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.44 E-value=0.0067 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 378
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.44 E-value=0.012 Score=51.36 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHc
Q 012523 262 RVGVVGRTGSGKTTLISALF 281 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~ 281 (461)
+++++|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 379
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.41 E-value=0.0068 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 380
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.41 E-value=0.007 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 381
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.40 E-value=0.007 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5999999999999999999853
No 382
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.37 E-value=0.0086 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34457999999999999999999864
No 383
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.36 E-value=0.0077 Score=58.40 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++|+|++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999975
No 384
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.36 E-value=0.0076 Score=56.65 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++|+|++|||||||++.|+|-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.35 E-value=0.0071 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
No 386
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.32 E-value=0.012 Score=53.34 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=28.1
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++..-+.+ .|..+.|+||||||||||...|+.-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 566655554 58899999999999999999887543
No 387
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.32 E-value=0.009 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.29 E-value=0.008 Score=57.64 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHcc
Q 012523 260 GTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.29 E-value=0.0079 Score=53.23 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 390
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.0078 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 391
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.28 E-value=0.0081 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 392
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.038 Score=55.57 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
+++..-+.+.||.|+|||+|++.+++...
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 45555699999999999999999997643
No 393
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.27 E-value=0.0083 Score=53.15 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 394
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.27 E-value=0.0082 Score=52.63 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999884
No 395
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.25 E-value=0.0094 Score=54.76 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 396
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.25 E-value=0.0082 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999743
No 397
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.24 E-value=0.0081 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHcc
Q 012523 261 TRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~g 282 (461)
=+++++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3699999999999999999986
No 398
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.24 E-value=0.058 Score=55.85 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++..-+.|.||+|+|||++++.++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4566779999999999999999998653
No 399
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.23 E-value=0.0095 Score=53.29 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 400
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.23 E-value=0.0084 Score=54.40 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 401
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.22 E-value=0.0085 Score=53.58 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 402
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.22 E-value=0.0051 Score=56.03 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.-+++++|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999864
No 403
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.21 E-value=0.0089 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 404
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.19 E-value=0.01 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++++|++|+|||||++.+++-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 405
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.19 E-value=0.01 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
=+++++|++|+|||||++.+.+-+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 36999999999999999999885543
No 406
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.18 E-value=0.0085 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
=+++++|++|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 469999999999999999998643
No 407
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.18 E-value=0.0093 Score=56.87 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|||||||++.|+|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 408
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.17 E-value=0.065 Score=63.93 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.6
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++|+.+.|.||+|+|||||..-++.-.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987776433
No 409
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.17 E-value=0.0092 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 410
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.17 E-value=0.0096 Score=57.84 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+|+|+|++|+|||||++.|+|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999999985
No 411
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.16 E-value=0.0097 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+|-.+.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
No 412
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.16 E-value=0.015 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999865
No 413
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.15 E-value=0.01 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.0089 Score=53.04 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 415
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.13 E-value=0.012 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998643
No 416
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.12 E-value=0.011 Score=56.01 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.|+|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 417
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.011 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHcc
Q 012523 260 GTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999985
No 418
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.11 E-value=0.0097 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 419
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.10 E-value=0.01 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998644
No 420
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.09 E-value=0.012 Score=55.95 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCCCceE
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEPENGR 290 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~~~G~ 290 (461)
-+++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876654444
No 421
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.06 E-value=0.0095 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 422
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.05 E-value=0.00095 Score=73.70 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=36.6
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECCEeCC
Q 012523 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (461)
Q Consensus 253 i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g~~i~ 299 (461)
.++.+.+|+.+.++||+|+|||||++.+++... .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 466788999999999999999999999999875 345666665543
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.03 E-value=0.011 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997544
No 424
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.02 E-value=0.012 Score=57.15 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 425
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.01 E-value=0.01 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 426
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.01 E-value=0.011 Score=52.41 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 427
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.011 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999853
No 428
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.00 E-value=0.044 Score=56.52 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=55.0
Q ss_pred ccccCCCCCCChhHHHHHHH--HHHhhc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Q 012523 361 SSVSDEGENWSVGQRQLFCL--GRVLLK---------------RNRILILDEATASIDSATDAILQRIIREEFPGSTVIT 423 (461)
Q Consensus 361 t~~~~~g~~lSgGq~Qrl~l--ARal~~---------------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 423 (461)
+........+||||+|-.-+ +-|++. .=.+++|||+ +-+|.+..+..++.++++ +-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 34444556789999995333 333222 1258999999 999999999999999875 677778
Q ss_pred EccCchhhhhcCEEEEEe
Q 012523 424 IAHRVPTITDSDMVMVLS 441 (461)
Q Consensus 424 itH~~~~~~~~d~i~vl~ 441 (461)
+|=. .....+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 8766 4445589888774
No 429
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.01 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++++|++|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 430
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.00 E-value=0.013 Score=51.22 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
..+..+.|+||+|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345779999999999999999998764
No 431
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.00 E-value=0.011 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 432
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.011 Score=52.21 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.98 E-value=0.011 Score=52.89 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
.=+++++|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999999854
No 434
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.98 E-value=0.013 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
-=+++++|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999853
No 435
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.98 E-value=0.011 Score=57.08 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999874
No 436
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.97 E-value=0.011 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
=+++++|++|+|||||++.+++-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999853
No 437
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.97 E-value=0.012 Score=53.42 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
No 438
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.95 E-value=0.013 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
+.=+++++|++|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999975
No 439
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.95 E-value=0.013 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 440
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.94 E-value=0.012 Score=58.01 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
..++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 441
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.94 E-value=0.012 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.++|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999743
No 442
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.92 E-value=0.013 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
.=+++++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999854
No 443
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.92 E-value=0.012 Score=55.78 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 444
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.91 E-value=0.0089 Score=52.13 Aligned_cols=22 Identities=41% Similarity=0.741 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHcc
Q 012523 261 TRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~g 282 (461)
=+++++|++|+|||||++.+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999885
No 445
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.89 E-value=0.029 Score=62.25 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
..+.++||+|+|||++++.|......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987654
No 446
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.89 E-value=0.012 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcc
Q 012523 262 RVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~g 282 (461)
+++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988864
No 447
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.88 E-value=0.012 Score=53.63 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
-+++++|++|||||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999988653
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.88 E-value=0.0093 Score=54.37 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+-+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 449
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.88 E-value=0.0089 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=9.4
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.86 E-value=0.015 Score=53.75 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.+..+.|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
No 451
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.85 E-value=0.012 Score=56.33 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.|+|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 452
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.78 E-value=0.013 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 453
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.78 E-value=0.012 Score=54.55 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
.+|..+.+-|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999986654
No 454
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.77 E-value=0.016 Score=53.23 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
.+|..+.+-|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999876653
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.016 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++|+|++|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
No 456
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.73 E-value=0.084 Score=62.17 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=26.7
Q ss_pred cccceeEE---eeCCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 249 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 249 ~l~~i~l~---i~~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
-|+.+ +. +++|+.+.|.||+|+|||||..-++.
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45554 33 88999999999999999999876653
No 457
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.72 E-value=0.018 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
-+++++|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999854
No 458
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.70 E-value=0.012 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
+.=+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344799999999999999999964
No 459
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.69 E-value=0.006 Score=62.61 Aligned_cols=42 Identities=33% Similarity=0.642 Sum_probs=32.6
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccCCCCCceEE
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G~i 291 (461)
+++.+ ..+-+|++++|+|++|+|||||++.|.+-.....|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 55555 6778899999999999999999999886544333333
No 460
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.69 E-value=0.016 Score=53.36 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
++|..+.+-|++||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999987765
No 461
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.67 E-value=0.0085 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998854
No 462
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.015 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999854
No 463
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.63 E-value=0.018 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
+|..+.+.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
No 464
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.62 E-value=0.016 Score=53.68 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=24.9
Q ss_pred hhcCCCEEEEeCCCCC-CCH-HHHHHHHHHHHHHcCCcEEEEEcc
Q 012523 384 LLKRNRILILDEATAS-IDS-ATDAILQRIIREEFPGSTVITIAH 426 (461)
Q Consensus 384 l~~~p~iliLDEpts~-LD~-~~~~~i~~~l~~~~~~~tvi~itH 426 (461)
+.++|+++|+||+-.. .+. .+...+.+....+..+..++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3368999999997642 332 222333333333344667777777
No 465
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.62 E-value=0.077 Score=51.88 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=29.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCch
Q 012523 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP 429 (461)
Q Consensus 387 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 429 (461)
+++++|+||+= .|.......+.+.+++-.++..+|++|++++
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 57899999973 4566666677777765434556788888875
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.57 E-value=0.017 Score=55.44 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHcc
Q 012523 261 TRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~g 282 (461)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 467
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.57 E-value=0.23 Score=51.35 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=26.1
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
|+.+---+++|+.+.|.|++|+|||||+.-++.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444433489999999999999999999766553
No 468
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.54 E-value=0.019 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987653
No 469
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.53 E-value=0.015 Score=53.57 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=24.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 256 ~i~~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+.++..++.|+||.||||+|..+.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566889999999999999999998655
No 470
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.52 E-value=0.02 Score=52.56 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
+|..+.+-|++||||||.++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 471
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.51 E-value=0.028 Score=49.76 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.2
Q ss_pred cccceeEEeeCCcEEEEEcCCCCCHHHHHHHHcc
Q 012523 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 249 ~l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
.++..-+. -.|.-+.|.|+||+||||+...|..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444443 4588999999999999999987764
No 472
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.48 E-value=0.019 Score=53.28 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
+|..++|.|..||||||+.+.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997664
No 473
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.48 E-value=0.014 Score=55.11 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
+++..++|.|+.||||||+.+.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
No 474
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.48 E-value=0.018 Score=56.26 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999997653
No 475
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.47 E-value=0.02 Score=52.91 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
.+|..+.+.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999986554
No 476
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.43 E-value=0.017 Score=52.67 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
-+++|+|++|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999888643
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.42 E-value=0.021 Score=55.46 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
...+.|+||||||||||...|+.-++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999986653
No 478
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.40 E-value=0.017 Score=50.50 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHccCCCC
Q 012523 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (461)
Q Consensus 258 ~~Ge~v~ivG~sGsGKSTll~ll~gl~~~ 286 (461)
..+..+.|+||+|+||||+++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667899999999999999999876543
No 479
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.39 E-value=0.018 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999753
No 480
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.32 E-value=0.0098 Score=53.16 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=4.5
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988754
No 481
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.25 E-value=0.019 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHcc
Q 012523 260 GTRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~g 282 (461)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34799999999999999987763
No 482
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.021 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++++|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 483
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.21 E-value=0.0072 Score=56.99 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=24.7
Q ss_pred ccceeEEeeCCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 250 l~~i~l~i~~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
+.+.....++| +.|.||+|+||||+++.+++.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34444444555 889999999999999999864
No 484
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.19 E-value=0.03 Score=51.64 Aligned_cols=24 Identities=50% Similarity=0.761 Sum_probs=21.7
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHH
Q 012523 257 FKEGTRVGVVGRTGSGKTTLISAL 280 (461)
Q Consensus 257 i~~Ge~v~ivG~sGsGKSTll~ll 280 (461)
+++|+.+.|.|++|+|||||..-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997544
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.17 E-value=0.022 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHccC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl 283 (461)
=+++++|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 486
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.10 E-value=0.03 Score=53.61 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCCCCce
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~~~~G 289 (461)
+-.++++|.+|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 347999999999999999999987644333
No 487
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.08 E-value=0.13 Score=61.43 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=30.8
Q ss_pred Ccccccee--EEeeCCcEEEEEcCCCCCHHHHHHHHc
Q 012523 247 PLVLKGIT--CTFKEGTRVGVVGRTGSGKTTLISALF 281 (461)
Q Consensus 247 ~~~l~~i~--l~i~~Ge~v~ivG~sGsGKSTll~ll~ 281 (461)
.+.|+++. .-+++|+.+.+.||+|||||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 35688886 579999999999999999999999876
No 488
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.06 E-value=0.025 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHccCCC
Q 012523 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 260 Ge~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
...++|+||||||||||...|+.-++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999986543
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.05 E-value=0.0069 Score=61.84 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHccCCCCCceEEEECC
Q 012523 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~gl~~~~~G~i~i~g 295 (461)
..++++|++|+||||++..|++.+.....++.+-.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999988765444555433
No 490
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.99 E-value=0.024 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHcc
Q 012523 261 TRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~g 282 (461)
=+++++|++|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999874
No 491
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.69 E-value=0.027 Score=56.19 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl 283 (461)
++..++++|++|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999986
No 492
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.65 E-value=0.01 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++++|++|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988643
No 493
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.54 E-value=0.033 Score=56.74 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHccC
Q 012523 262 RVGVVGRTGSGKTTLISALFRL 283 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl 283 (461)
+++|+|++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
No 494
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.49 E-value=0.022 Score=51.79 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHH
Q 012523 377 LFCLGRVLLKRNRILILDEATA-----SIDSATDAILQRIIREE 415 (461)
Q Consensus 377 rl~lARal~~~p~iliLDEpts-----~LD~~~~~~i~~~l~~~ 415 (461)
.-.|++.+..+|.....++|+. .+|+...+.+.+.++..
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVA 209 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhh
Confidence 4477888888888888777765 56777777776666553
No 495
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.45 E-value=0.028 Score=55.59 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
.++++|+.|+|||||++.|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
No 496
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.43 E-value=0.028 Score=56.05 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHccCC
Q 012523 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 259 ~Ge~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
++..++++|++|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 67889999999999999999999863
No 497
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.43 E-value=0.037 Score=55.77 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV 284 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~ 284 (461)
+++|+|++|+|||||++.|+|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999753
No 498
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.47 E-value=0.014 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHcc
Q 012523 261 TRVGVVGRTGSGKTTLISALFR 282 (461)
Q Consensus 261 e~v~ivG~sGsGKSTll~ll~g 282 (461)
=+++++|++|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4699999999999999988764
No 499
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.33 E-value=0.042 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHccCCC
Q 012523 262 RVGVVGRTGSGKTTLISALFRLVE 285 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~~ 285 (461)
++.|+||.||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999996653
No 500
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.32 E-value=0.073 Score=54.23 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCHHHHHHHHccCC----C--------CCceEEEECCEe
Q 012523 262 RVGVVGRTGSGKTTLISALFRLV----E--------PENGRILIDGLD 297 (461)
Q Consensus 262 ~v~ivG~sGsGKSTll~ll~gl~----~--------~~~G~i~i~g~~ 297 (461)
+++|||++++|||||++-|+|-- . ...|.+.++|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~ 50 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 50 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence 68999999999999999998753 1 224667777764
Done!