Query 012525
Match_columns 461
No_of_seqs 289 out of 2515
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 2.8E-38 6.1E-43 324.1 19.9 195 260-454 132-357 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 1E-33 2.2E-38 282.2 12.1 181 258-454 46-228 (408)
3 PRK05342 clpX ATP-dependent pr 99.9 3.9E-25 8.4E-30 231.5 17.1 179 261-454 59-239 (412)
4 TIGR00382 clpX endopeptidase C 99.9 8.6E-25 1.9E-29 228.6 16.7 182 260-454 64-247 (413)
5 KOG0738 AAA+-type ATPase [Post 99.9 8.6E-23 1.9E-27 208.4 21.2 150 271-455 211-362 (491)
6 TIGR00390 hslU ATP-dependent p 99.8 1.2E-20 2.5E-25 196.9 12.8 103 263-382 2-104 (441)
7 COG1222 RPT1 ATP-dependent 26S 99.8 2E-20 4.4E-25 189.9 12.4 153 274-461 152-310 (406)
8 PRK05201 hslU ATP-dependent pr 99.8 4.1E-20 9E-25 192.9 12.3 104 262-382 4-107 (443)
9 KOG0733 Nuclear AAA ATPase (VC 99.8 6.6E-20 1.4E-24 195.3 13.5 152 271-461 510-667 (802)
10 KOG0736 Peroxisome assembly fa 99.8 4.8E-20 1E-24 200.2 12.0 155 271-461 671-831 (953)
11 KOG0730 AAA+-type ATPase [Post 99.8 1.6E-19 3.6E-24 194.0 12.5 143 275-455 436-580 (693)
12 COG1223 Predicted ATPase (AAA+ 99.8 1.8E-19 3.8E-24 176.8 11.3 145 270-454 119-263 (368)
13 KOG0739 AAA+-type ATPase [Post 99.8 4E-19 8.7E-24 176.9 13.9 146 271-455 132-279 (439)
14 KOG0734 AAA+-type ATPase conta 99.8 3E-19 6.5E-24 188.0 11.6 155 263-455 294-449 (752)
15 KOG0731 AAA+-type ATPase conta 99.8 9.3E-19 2E-23 192.5 11.1 150 270-454 309-459 (774)
16 KOG0733 Nuclear AAA ATPase (VC 99.8 4.2E-18 9.1E-23 181.7 12.7 150 270-455 188-339 (802)
17 COG0542 clpA ATP-binding subun 99.7 1.6E-18 3.6E-23 191.5 8.5 168 248-458 462-647 (786)
18 COG1220 HslU ATP-dependent pro 99.7 1.7E-17 3.7E-22 167.6 12.7 102 262-380 4-105 (444)
19 PRK11034 clpA ATP-dependent Cl 99.7 7.7E-17 1.7E-21 180.1 11.0 166 249-457 430-610 (758)
20 COG0465 HflB ATP-dependent Zn 99.7 9.5E-17 2E-21 173.7 11.1 150 270-454 148-297 (596)
21 PLN00020 ribulose bisphosphate 99.7 3.7E-16 8E-21 160.8 13.8 127 324-454 147-277 (413)
22 KOG0735 AAA+-type ATPase [Post 99.7 2.1E-16 4.5E-21 171.0 12.2 144 275-455 669-814 (952)
23 PF05496 RuvB_N: Holliday junc 99.7 6.8E-16 1.5E-20 149.7 12.6 129 270-453 22-157 (233)
24 PF07724 AAA_2: AAA domain (Cd 99.6 1.1E-16 2.3E-21 149.4 5.8 126 325-457 3-132 (171)
25 TIGR02639 ClpA ATP-dependent C 99.6 7E-16 1.5E-20 172.4 12.4 166 249-458 426-607 (731)
26 KOG0727 26S proteasome regulat 99.6 8.9E-16 1.9E-20 150.4 11.4 135 275-433 157-291 (408)
27 COG0464 SpoVK ATPases of the A 99.6 1.3E-15 2.9E-20 162.5 13.9 145 275-455 244-388 (494)
28 TIGR01243 CDC48 AAA family ATP 99.6 2.7E-15 5.9E-20 167.7 14.6 146 271-454 452-599 (733)
29 CHL00095 clpC Clp protease ATP 99.6 1.3E-15 2.9E-20 172.1 11.8 166 249-457 481-664 (821)
30 TIGR01241 FtsH_fam ATP-depende 99.6 2E-15 4.3E-20 161.7 12.3 150 270-454 53-202 (495)
31 CHL00195 ycf46 Ycf46; Provisio 99.6 4.1E-15 8.9E-20 159.2 14.3 140 275-454 230-369 (489)
32 TIGR03345 VI_ClpV1 type VI sec 99.6 2.2E-15 4.9E-20 170.7 10.8 166 249-457 538-721 (852)
33 KOG0728 26S proteasome regulat 99.6 3.5E-15 7.6E-20 146.1 10.5 137 271-433 145-283 (404)
34 PTZ00454 26S protease regulato 99.6 9E-15 1.9E-19 153.1 14.2 148 270-453 143-292 (398)
35 KOG0737 AAA+-type ATPase [Post 99.6 1.7E-15 3.7E-20 154.6 8.4 161 259-455 79-241 (386)
36 PF00158 Sigma54_activat: Sigm 99.6 1.9E-15 4E-20 140.7 7.7 128 309-458 6-147 (168)
37 PRK03992 proteasome-activating 99.6 1E-14 2.2E-19 152.2 14.0 143 274-454 132-279 (389)
38 CHL00176 ftsH cell division pr 99.6 8.8E-15 1.9E-19 161.1 12.6 150 270-454 181-330 (638)
39 TIGR02880 cbbX_cfxQ probable R 99.6 1.2E-14 2.5E-19 145.7 12.4 142 260-431 9-157 (284)
40 TIGR03689 pup_AAA proteasome A 99.6 1.7E-14 3.7E-19 154.9 14.0 152 270-455 180-343 (512)
41 PF01078 Mg_chelatase: Magnesi 99.6 5.5E-15 1.2E-19 141.7 8.7 139 274-459 4-163 (206)
42 COG0714 MoxR-like ATPases [Gen 99.6 8.7E-15 1.9E-19 148.8 10.1 145 263-454 14-163 (329)
43 KOG0652 26S proteasome regulat 99.5 1.4E-14 2.9E-19 142.7 9.6 131 275-432 173-306 (424)
44 CHL00181 cbbX CbbX; Provisiona 99.5 2.9E-14 6.2E-19 143.3 12.0 139 262-431 12-158 (287)
45 TIGR03346 chaperone_ClpB ATP-d 99.5 2E-14 4.4E-19 163.1 12.2 165 249-457 537-720 (852)
46 KOG0729 26S proteasome regulat 99.5 3E-14 6.5E-19 140.7 11.6 129 274-429 178-306 (435)
47 TIGR02881 spore_V_K stage V sp 99.5 8.8E-14 1.9E-18 137.1 14.9 132 268-431 2-140 (261)
48 KOG0726 26S proteasome regulat 99.5 1.3E-14 2.8E-19 144.6 8.6 126 275-429 187-314 (440)
49 PF07726 AAA_3: ATPase family 99.5 9.4E-16 2E-20 137.0 0.1 112 327-455 1-113 (131)
50 COG2255 RuvB Holliday junction 99.5 8.9E-14 1.9E-18 138.3 13.2 116 268-438 22-137 (332)
51 PF00004 AAA: ATPase family as 99.5 6.4E-14 1.4E-18 121.0 10.4 111 328-454 1-111 (132)
52 PTZ00361 26 proteosome regulat 99.5 6.1E-14 1.3E-18 148.4 12.3 147 271-453 182-330 (438)
53 COG2256 MGS1 ATPase related to 99.5 3.4E-14 7.4E-19 146.6 10.0 86 326-434 49-134 (436)
54 PRK10865 protein disaggregatio 99.5 4.9E-14 1.1E-18 160.0 12.0 166 249-457 540-723 (857)
55 KOG0740 AAA+-type ATPase [Post 99.5 5.9E-14 1.3E-18 146.9 10.3 148 274-456 154-301 (428)
56 KOG1051 Chaperone HSP104 and r 99.5 1.2E-13 2.5E-18 155.2 12.7 166 248-457 533-713 (898)
57 COG3604 FhlA Transcriptional r 99.5 1.6E-14 3.4E-19 152.3 5.3 139 305-458 226-371 (550)
58 TIGR01242 26Sp45 26S proteasom 99.5 2.2E-13 4.8E-18 140.4 13.5 146 274-454 123-270 (364)
59 COG2204 AtoC Response regulato 99.5 8.1E-14 1.7E-18 147.6 8.4 140 304-458 143-289 (464)
60 KOG0732 AAA+-type ATPase conta 99.5 1.7E-13 3.7E-18 155.0 10.7 148 268-454 261-415 (1080)
61 PRK10733 hflB ATP-dependent me 99.5 4.2E-13 9.2E-18 148.3 12.8 157 263-454 143-299 (644)
62 TIGR02640 gas_vesic_GvpN gas v 99.4 1.7E-13 3.7E-18 135.5 8.4 118 325-456 21-162 (262)
63 KOG0651 26S proteasome regulat 99.4 3.3E-13 7.1E-18 135.6 9.8 128 275-429 134-261 (388)
64 COG3829 RocR Transcriptional r 99.4 8.1E-14 1.8E-18 148.4 5.8 139 305-458 248-394 (560)
65 PRK13407 bchI magnesium chelat 99.4 5.2E-13 1.1E-17 136.9 10.9 141 271-457 7-183 (334)
66 COG0466 Lon ATP-dependent Lon 99.4 6.5E-13 1.4E-17 144.9 12.1 156 260-456 310-477 (782)
67 TIGR00763 lon ATP-dependent pr 99.4 1E-12 2.2E-17 148.1 13.4 154 261-455 308-473 (775)
68 CHL00081 chlI Mg-protoporyphyr 99.4 1.1E-12 2.3E-17 135.3 11.8 138 275-458 19-200 (350)
69 TIGR01243 CDC48 AAA family ATP 99.4 1.3E-12 2.9E-17 146.2 13.4 146 270-454 176-323 (733)
70 PRK13531 regulatory ATPase Rav 99.4 1.2E-12 2.7E-17 139.3 12.0 139 265-453 12-155 (498)
71 KOG0741 AAA+-type ATPase [Post 99.4 8.2E-13 1.8E-17 139.9 7.3 116 326-453 257-377 (744)
72 TIGR02974 phageshock_pspF psp 99.4 1.5E-12 3.3E-17 133.1 9.1 130 309-457 6-146 (329)
73 TIGR02442 Cob-chelat-sub cobal 99.3 3.6E-12 7.7E-17 140.7 11.4 138 274-457 5-181 (633)
74 KOG0744 AAA+-type ATPase [Post 99.3 2E-12 4.3E-17 130.6 8.4 119 326-455 178-307 (423)
75 CHL00206 ycf2 Ycf2; Provisiona 99.3 2.7E-12 5.9E-17 151.2 10.3 113 322-454 1627-1781(2281)
76 PF07728 AAA_5: AAA domain (dy 99.3 3.2E-13 6.9E-18 119.7 1.7 114 327-456 1-125 (139)
77 COG1221 PspF Transcriptional r 99.3 1.5E-12 3.2E-17 135.9 5.6 137 306-457 82-226 (403)
78 PRK12323 DNA polymerase III su 99.3 9.4E-12 2E-16 136.3 11.7 109 269-430 13-150 (700)
79 TIGR02030 BchI-ChlI magnesium 99.3 6.5E-12 1.4E-16 129.0 9.7 139 275-458 6-187 (337)
80 KOG0989 Replication factor C, 99.3 7.7E-12 1.7E-16 125.7 9.7 119 261-430 25-155 (346)
81 PRK15424 propionate catabolism 99.3 4.9E-12 1.1E-16 137.0 8.9 134 305-457 222-375 (538)
82 PRK14956 DNA polymerase III su 99.3 1.4E-11 3E-16 131.4 11.9 110 268-430 14-147 (484)
83 PRK10787 DNA-binding ATP-depen 99.3 3.7E-11 7.9E-16 135.5 15.8 163 250-455 301-475 (784)
84 TIGR01650 PD_CobS cobaltochela 99.3 3.8E-12 8.2E-17 129.9 7.1 115 325-454 64-187 (327)
85 TIGR00635 ruvB Holliday juncti 99.3 1.7E-11 3.7E-16 122.4 11.7 131 270-455 2-139 (305)
86 PRK11608 pspF phage shock prot 99.3 7.3E-12 1.6E-16 127.8 8.8 115 321-457 25-153 (326)
87 COG0606 Predicted ATPase with 99.3 3.4E-12 7.4E-17 134.5 6.5 139 271-457 178-338 (490)
88 PRK07003 DNA polymerase III su 99.3 1.8E-11 3.9E-16 135.7 12.1 111 267-430 11-145 (830)
89 TIGR02902 spore_lonB ATP-depen 99.3 1.2E-11 2.5E-16 134.2 10.5 144 270-459 63-247 (531)
90 PRK00080 ruvB Holliday junctio 99.3 3.7E-11 8E-16 122.2 13.2 111 270-435 23-133 (328)
91 KOG0730 AAA+-type ATPase [Post 99.3 1.5E-11 3.2E-16 133.2 10.6 144 274-454 185-329 (693)
92 KOG2004 Mitochondrial ATP-depe 99.3 2.1E-11 4.6E-16 132.8 11.2 163 250-455 390-564 (906)
93 PRK14958 DNA polymerase III su 99.3 2E-11 4.4E-16 131.7 11.0 110 268-430 12-145 (509)
94 TIGR02329 propionate_PrpR prop 99.2 1.6E-11 3.4E-16 133.0 9.1 135 305-458 215-361 (526)
95 TIGR01817 nifA Nif-specific re 99.2 1.5E-11 3.4E-16 132.9 8.7 131 305-457 199-343 (534)
96 PLN03025 replication factor C 99.2 3.3E-11 7.2E-16 122.2 10.5 109 268-430 9-125 (319)
97 PRK13342 recombination factor 99.2 3.7E-11 8E-16 126.2 10.9 85 326-433 37-121 (413)
98 PRK14960 DNA polymerase III su 99.2 5.1E-11 1.1E-15 130.8 11.9 109 269-430 12-144 (702)
99 PRK11388 DNA-binding transcrip 99.2 1.7E-11 3.7E-16 135.1 8.2 130 306-457 329-469 (638)
100 TIGR02639 ClpA ATP-dependent C 99.2 4.5E-11 9.7E-16 134.1 11.4 121 270-432 180-311 (731)
101 COG1239 ChlI Mg-chelatase subu 99.2 4.1E-11 8.8E-16 124.9 10.2 146 270-461 14-203 (423)
102 PRK14962 DNA polymerase III su 99.2 5.8E-11 1.3E-15 127.1 11.6 109 269-430 11-143 (472)
103 KOG0742 AAA+-type ATPase [Post 99.2 1.1E-11 2.5E-16 128.2 5.7 112 325-455 384-495 (630)
104 PRK07940 DNA polymerase III su 99.2 6.5E-11 1.4E-15 124.0 11.2 117 271-430 4-143 (394)
105 TIGR00368 Mg chelatase-related 99.2 4.2E-11 9.1E-16 128.9 9.9 140 270-457 190-350 (499)
106 PRK07764 DNA polymerase III su 99.2 6.9E-11 1.5E-15 133.6 12.1 110 268-430 11-146 (824)
107 PRK05022 anaerobic nitric oxid 99.2 3.3E-11 7.2E-16 129.8 9.0 131 305-457 190-334 (509)
108 PRK07994 DNA polymerase III su 99.2 7.4E-11 1.6E-15 130.1 11.9 109 269-430 13-145 (647)
109 PRK14949 DNA polymerase III su 99.2 7.1E-11 1.5E-15 133.0 11.8 116 269-430 13-145 (944)
110 PHA02244 ATPase-like protein 99.2 3.7E-11 8.1E-16 124.4 8.8 128 307-454 101-230 (383)
111 PRK14964 DNA polymerase III su 99.2 1E-10 2.2E-15 125.5 12.1 109 269-430 10-142 (491)
112 KOG2028 ATPase related to the 99.2 4.1E-11 8.9E-16 122.8 7.8 87 326-435 163-253 (554)
113 PRK14952 DNA polymerase III su 99.2 1.7E-10 3.7E-15 126.2 12.6 109 269-430 10-144 (584)
114 PRK14961 DNA polymerase III su 99.2 2E-10 4.4E-15 118.8 12.4 116 269-430 13-145 (363)
115 PRK14969 DNA polymerase III su 99.2 1.9E-10 4.2E-15 124.6 12.4 109 269-430 13-145 (527)
116 smart00350 MCM minichromosome 99.2 7.6E-11 1.7E-15 127.2 9.2 153 266-456 196-354 (509)
117 PRK15429 formate hydrogenlyase 99.1 1.4E-10 3.1E-15 129.0 11.2 138 305-457 379-523 (686)
118 PRK10820 DNA-binding transcrip 99.1 6.8E-11 1.5E-15 127.8 8.2 129 307-457 209-351 (520)
119 PRK06645 DNA polymerase III su 99.1 2.6E-10 5.5E-15 123.0 12.3 116 269-430 18-154 (507)
120 PRK14951 DNA polymerase III su 99.1 1.9E-10 4E-15 126.5 11.2 110 268-430 12-150 (618)
121 PRK08691 DNA polymerase III su 99.1 2.4E-10 5.2E-15 126.3 12.1 117 268-430 12-145 (709)
122 PRK14957 DNA polymerase III su 99.1 2.7E-10 5.8E-15 123.7 12.1 109 269-430 13-145 (546)
123 PRK14959 DNA polymerase III su 99.1 2.9E-10 6.2E-15 124.8 11.8 111 267-430 11-145 (624)
124 KOG0743 AAA+-type ATPase [Post 99.1 1.6E-10 3.5E-15 121.1 9.3 116 325-461 235-358 (457)
125 PRK04195 replication factor C 99.1 3.5E-10 7.6E-15 121.1 11.8 121 264-430 6-128 (482)
126 cd00009 AAA The AAA+ (ATPases 99.1 8.6E-10 1.9E-14 94.6 11.7 109 325-456 19-131 (151)
127 KOG0991 Replication factor C, 99.1 2.1E-10 4.6E-15 111.9 8.5 111 268-429 23-138 (333)
128 PRK14955 DNA polymerase III su 99.1 4E-10 8.6E-15 118.0 11.2 117 269-430 13-153 (397)
129 PRK14965 DNA polymerase III su 99.1 4.4E-10 9.5E-15 123.0 11.9 109 269-430 13-145 (576)
130 PRK14948 DNA polymerase III su 99.1 4.8E-10 1E-14 123.6 12.0 116 269-430 13-147 (620)
131 PRK14963 DNA polymerase III su 99.1 9.2E-10 2E-14 118.8 13.0 109 269-430 11-142 (504)
132 PRK05563 DNA polymerase III su 99.1 7.1E-10 1.5E-14 121.0 12.2 109 269-430 13-145 (559)
133 TIGR02031 BchD-ChlD magnesium 99.1 3.9E-10 8.3E-15 123.8 10.2 116 326-456 17-138 (589)
134 PRK12402 replication factor C 99.1 9.8E-10 2.1E-14 110.6 12.3 122 263-430 6-151 (337)
135 TIGR02903 spore_lon_C ATP-depe 99.1 1E-09 2.2E-14 121.0 13.4 97 325-435 175-296 (615)
136 CHL00095 clpC Clp protease ATP 99.0 3.8E-10 8.1E-15 128.2 8.9 121 271-434 178-309 (821)
137 PHA02544 44 clamp loader, smal 99.0 1.1E-09 2.5E-14 109.9 11.3 115 264-430 13-127 (316)
138 PRK10865 protein disaggregatio 99.0 4.2E-10 9E-15 128.3 8.9 122 269-432 175-307 (857)
139 PRK09111 DNA polymerase III su 99.0 1.3E-09 2.8E-14 119.8 12.0 115 268-430 20-158 (598)
140 TIGR02915 PEP_resp_reg putativ 99.0 6.6E-10 1.4E-14 116.7 9.1 131 305-457 142-286 (445)
141 TIGR02397 dnaX_nterm DNA polym 99.0 2.6E-09 5.6E-14 108.6 12.5 109 269-430 11-143 (355)
142 PRK13341 recombination factor 99.0 1.5E-09 3.2E-14 121.6 11.5 85 326-433 53-138 (725)
143 PRK10923 glnG nitrogen regulat 99.0 7.4E-10 1.6E-14 117.2 8.6 131 305-457 141-285 (469)
144 PRK05896 DNA polymerase III su 99.0 2.6E-09 5.5E-14 116.9 12.9 109 269-430 13-145 (605)
145 COG0470 HolB ATPase involved i 99.0 1.6E-09 3.5E-14 108.0 10.5 99 326-453 24-147 (325)
146 PRK14950 DNA polymerase III su 99.0 2.5E-09 5.4E-14 117.3 12.8 116 269-430 13-146 (585)
147 COG2812 DnaX DNA polymerase II 99.0 6.4E-10 1.4E-14 119.6 7.8 117 269-430 13-145 (515)
148 PRK14954 DNA polymerase III su 99.0 2.8E-09 6.1E-14 117.5 12.9 116 270-430 14-153 (620)
149 PRK09862 putative ATP-dependen 99.0 8.1E-10 1.8E-14 119.0 8.4 121 325-459 210-351 (506)
150 PF14532 Sigma54_activ_2: Sigm 99.0 4.2E-10 9.1E-15 100.5 5.0 108 307-458 3-113 (138)
151 PRK06305 DNA polymerase III su 99.0 2.9E-09 6.3E-14 113.5 12.2 109 269-430 14-147 (451)
152 PRK11361 acetoacetate metaboli 99.0 9.9E-10 2.1E-14 115.5 8.6 130 306-457 147-290 (457)
153 PRK15115 response regulator Gl 99.0 1.9E-09 4.2E-14 113.1 10.8 130 306-457 138-281 (444)
154 smart00763 AAA_PrkA PrkA AAA d 99.0 2E-09 4.4E-14 111.3 10.4 56 386-455 232-287 (361)
155 PRK07133 DNA polymerase III su 99.0 4E-09 8.7E-14 117.4 12.9 117 268-430 14-144 (725)
156 PRK06647 DNA polymerase III su 99.0 4.4E-09 9.6E-14 114.9 12.9 117 269-430 13-145 (563)
157 TIGR03345 VI_ClpV1 type VI sec 99.0 2E-09 4.3E-14 122.7 10.0 124 269-434 184-318 (852)
158 PRK14953 DNA polymerase III su 98.9 5.9E-09 1.3E-13 112.1 12.7 115 270-430 14-145 (486)
159 PTZ00111 DNA replication licen 98.9 2.4E-09 5.1E-14 121.1 9.8 158 267-455 444-610 (915)
160 PRK08451 DNA polymerase III su 98.9 6.5E-09 1.4E-13 112.7 12.7 109 269-430 11-143 (535)
161 PRK14970 DNA polymerase III su 98.9 7.4E-09 1.6E-13 106.7 12.4 114 269-430 14-134 (367)
162 TIGR03346 chaperone_ClpB ATP-d 98.9 4.9E-09 1.1E-13 119.6 10.9 121 270-432 171-302 (852)
163 COG3283 TyrR Transcriptional r 98.9 2.8E-09 6E-14 109.4 7.8 130 307-458 209-347 (511)
164 PRK13406 bchD magnesium chelat 98.9 6.4E-09 1.4E-13 114.0 11.0 115 326-454 26-145 (584)
165 TIGR00764 lon_rel lon-related 98.9 5.8E-09 1.3E-13 115.0 10.4 56 386-455 213-278 (608)
166 PRK11034 clpA ATP-dependent Cl 98.9 4.3E-09 9.2E-14 118.4 9.5 120 271-432 185-315 (758)
167 smart00382 AAA ATPases associa 98.9 9.1E-09 2E-13 86.9 9.3 77 325-405 2-93 (148)
168 PRK00440 rfc replication facto 98.9 2E-08 4.3E-13 100.2 12.9 113 266-430 11-128 (319)
169 PRK14971 DNA polymerase III su 98.9 1.6E-08 3.5E-13 111.6 13.0 109 269-430 14-147 (614)
170 KOG2170 ATPase of the AAA+ sup 98.9 1.7E-08 3.7E-13 101.6 11.5 152 262-458 71-228 (344)
171 COG3284 AcoR Transcriptional a 98.8 1.2E-09 2.7E-14 118.3 2.8 137 306-458 317-460 (606)
172 TIGR01818 ntrC nitrogen regula 98.8 1E-08 2.2E-13 108.2 8.7 133 306-457 138-281 (463)
173 PRK10365 transcriptional regul 98.8 1.7E-08 3.7E-13 105.5 10.2 130 306-457 143-286 (441)
174 PF13177 DNA_pol3_delta2: DNA 98.8 6E-08 1.3E-12 89.6 12.6 106 277-431 1-129 (162)
175 PRK07471 DNA polymerase III su 98.8 4.7E-08 1E-12 101.7 12.8 112 275-430 21-167 (365)
176 PRK05564 DNA polymerase III su 98.8 5.1E-08 1.1E-12 98.7 12.4 109 271-430 3-119 (313)
177 PRK11331 5-methylcytosine-spec 98.8 3.2E-08 6.9E-13 105.1 11.2 118 325-458 194-338 (459)
178 PRK13765 ATP-dependent proteas 98.8 1.2E-08 2.7E-13 112.7 8.4 57 386-456 222-288 (637)
179 KOG1969 DNA replication checkp 98.8 6.4E-08 1.4E-12 106.4 13.5 88 324-429 325-412 (877)
180 TIGR03420 DnaA_homol_Hda DnaA 98.7 4.7E-08 1E-12 93.1 9.5 65 325-405 38-105 (226)
181 PRK07399 DNA polymerase III su 98.7 1E-07 2.2E-12 97.3 12.1 115 271-430 3-150 (314)
182 TIGR00678 holB DNA polymerase 98.7 6.7E-08 1.5E-12 90.3 9.9 84 326-430 15-122 (188)
183 PRK09112 DNA polymerase III su 98.7 1.6E-07 3.4E-12 97.3 12.6 111 275-430 25-167 (351)
184 PRK08058 DNA polymerase III su 98.7 1.2E-07 2.6E-12 97.1 11.5 115 271-430 4-136 (329)
185 PF05673 DUF815: Protein of un 98.7 2.8E-07 6E-12 91.0 12.5 123 270-454 25-150 (249)
186 COG4650 RtcR Sigma54-dependent 98.6 7.6E-08 1.6E-12 97.0 7.7 116 325-455 208-333 (531)
187 PRK12377 putative replication 98.6 6.4E-08 1.4E-12 95.8 6.8 103 325-458 101-209 (248)
188 COG0542 clpA ATP-binding subun 98.6 2.3E-07 5E-12 103.9 11.6 131 263-435 161-302 (786)
189 TIGR02928 orc1/cdc6 family rep 98.6 1.5E-07 3.2E-12 96.3 8.9 60 275-361 17-85 (365)
190 PRK08116 hypothetical protein; 98.6 5.5E-07 1.2E-11 89.9 12.2 104 326-458 115-224 (268)
191 PRK05707 DNA polymerase III su 98.5 3.5E-07 7.6E-12 93.9 9.7 87 325-430 22-132 (328)
192 PRK00411 cdc6 cell division co 98.5 7.7E-07 1.7E-11 92.0 12.1 61 274-361 31-96 (394)
193 PF13401 AAA_22: AAA domain; P 98.5 5E-07 1.1E-11 78.4 8.6 102 325-455 4-128 (131)
194 PRK08727 hypothetical protein; 98.5 9.9E-07 2.1E-11 86.0 11.6 64 326-405 42-108 (233)
195 PRK14086 dnaA chromosomal repl 98.5 3.7E-06 8E-11 92.6 17.1 73 326-405 315-392 (617)
196 PRK08084 DNA replication initi 98.5 1.1E-06 2.3E-11 85.9 11.4 64 326-405 46-112 (235)
197 PRK08903 DnaA regulatory inact 98.5 5.9E-07 1.3E-11 86.3 9.3 70 326-429 43-115 (227)
198 PRK06893 DNA replication initi 98.5 3.1E-07 6.7E-12 89.3 7.2 64 326-405 40-106 (229)
199 PF01695 IstB_IS21: IstB-like 98.5 1.5E-07 3.3E-12 88.5 4.8 101 325-458 47-153 (178)
200 PRK07952 DNA replication prote 98.5 5.8E-07 1.2E-11 88.8 9.0 104 326-458 100-208 (244)
201 PRK08181 transposase; Validate 98.4 2E-07 4.4E-12 93.3 5.4 87 324-429 105-194 (269)
202 PF00493 MCM: MCM2/3/5 family 98.4 2.9E-08 6.3E-13 101.8 -1.5 156 267-456 18-175 (331)
203 PRK06526 transposase; Provisio 98.4 2.5E-07 5.4E-12 91.8 4.9 87 324-429 97-186 (254)
204 COG1484 DnaC DNA replication p 98.4 6.9E-07 1.5E-11 88.6 7.7 73 324-405 104-182 (254)
205 PF06309 Torsin: Torsin; Inte 98.4 2.3E-06 4.9E-11 76.7 10.1 109 262-396 14-127 (127)
206 PTZ00112 origin recognition co 98.4 3E-06 6.5E-11 95.9 12.7 86 328-429 784-894 (1164)
207 TIGR00362 DnaA chromosomal rep 98.4 8.3E-07 1.8E-11 93.0 7.8 73 326-405 137-214 (405)
208 PF00910 RNA_helicase: RNA hel 98.3 2E-06 4.4E-11 73.9 8.0 95 328-454 1-107 (107)
209 PRK08769 DNA polymerase III su 98.3 5.3E-06 1.1E-10 85.1 12.0 92 326-431 27-140 (319)
210 PRK00149 dnaA chromosomal repl 98.3 8.6E-07 1.9E-11 94.3 6.2 73 326-405 149-226 (450)
211 PRK06871 DNA polymerase III su 98.3 7E-06 1.5E-10 84.4 12.1 86 325-430 24-133 (325)
212 PRK05642 DNA replication initi 98.3 3E-06 6.6E-11 82.7 8.9 64 326-405 46-112 (234)
213 TIGR00602 rad24 checkpoint pro 98.3 3.4E-06 7.4E-11 93.5 10.1 66 263-355 75-140 (637)
214 PRK09183 transposase/IS protei 98.3 1.3E-06 2.8E-11 86.8 6.1 106 323-457 100-208 (259)
215 PRK06921 hypothetical protein; 98.3 3E-06 6.6E-11 84.6 8.7 37 326-362 118-158 (266)
216 KOG0741 AAA+-type ATPase [Post 98.2 1.1E-05 2.3E-10 86.8 13.0 94 326-429 539-633 (744)
217 COG1474 CDC6 Cdc6-related prot 98.2 4.2E-06 9.1E-11 87.3 9.5 78 325-405 42-138 (366)
218 KOG0735 AAA+-type ATPase [Post 98.2 3.2E-06 6.9E-11 93.2 8.8 77 323-405 429-509 (952)
219 KOG0478 DNA replication licens 98.2 1.1E-06 2.5E-11 96.1 5.4 149 267-453 423-577 (804)
220 PRK08699 DNA polymerase III su 98.2 9E-06 1.9E-10 83.5 11.5 92 325-431 21-140 (325)
221 PRK06964 DNA polymerase III su 98.2 8.8E-06 1.9E-10 84.2 11.4 92 325-430 21-158 (342)
222 PRK06835 DNA replication prote 98.2 2.6E-06 5.6E-11 87.6 7.4 103 326-458 184-292 (329)
223 KOG0480 DNA replication licens 98.2 1.6E-06 3.5E-11 94.4 5.9 155 266-454 338-494 (764)
224 PF03969 AFG1_ATPase: AFG1-lik 98.2 9.1E-06 2E-10 84.7 11.0 106 323-461 60-174 (362)
225 PRK14088 dnaA chromosomal repl 98.2 3.1E-06 6.7E-11 90.2 7.6 74 326-405 131-209 (440)
226 PRK07993 DNA polymerase III su 98.2 1.2E-05 2.7E-10 82.8 11.6 87 325-430 24-134 (334)
227 KOG0736 Peroxisome assembly fa 98.1 1.1E-05 2.4E-10 89.7 10.8 111 326-455 432-543 (953)
228 COG1241 MCM2 Predicted ATPase 98.1 1.2E-06 2.7E-11 97.1 2.9 152 267-456 280-437 (682)
229 PF13173 AAA_14: AAA domain 98.1 1E-05 2.2E-10 71.3 8.2 70 326-403 3-74 (128)
230 PRK04132 replication factor C 98.1 6.6E-06 1.4E-10 93.7 8.5 84 325-430 564-656 (846)
231 KOG0477 DNA replication licens 98.1 1.8E-06 3.9E-11 93.8 3.7 155 266-454 442-598 (854)
232 COG2607 Predicted ATPase (AAA+ 98.1 3.2E-05 6.8E-10 76.4 11.9 123 271-455 59-184 (287)
233 PF00308 Bac_DnaA: Bacterial d 98.1 1.2E-05 2.6E-10 77.9 9.0 81 326-429 35-124 (219)
234 PF06068 TIP49: TIP49 C-termin 98.1 1.1E-05 2.3E-10 84.0 9.0 81 274-383 25-107 (398)
235 PRK12422 chromosomal replicati 98.1 7.2E-06 1.6E-10 87.6 8.0 73 326-405 142-217 (445)
236 PRK08939 primosomal protein Dn 98.1 1E-05 2.2E-10 82.5 8.2 38 325-362 156-196 (306)
237 PRK06090 DNA polymerase III su 98.1 3.7E-05 8E-10 78.9 12.1 87 325-430 25-134 (319)
238 KOG0990 Replication factor C, 98.1 5.4E-06 1.2E-10 84.4 5.7 93 326-432 63-159 (360)
239 PRK14087 dnaA chromosomal repl 98.0 1.1E-05 2.5E-10 86.2 7.4 75 326-405 142-221 (450)
240 TIGR03015 pepcterm_ATPase puta 98.0 3.5E-05 7.7E-10 75.3 10.0 25 326-350 44-68 (269)
241 PF12774 AAA_6: Hydrolytic ATP 98.0 5.2E-05 1.1E-09 74.4 10.8 67 326-405 33-99 (231)
242 PRK05917 DNA polymerase III su 97.9 5.8E-05 1.3E-09 76.5 10.4 91 325-430 19-121 (290)
243 PRK06620 hypothetical protein; 97.9 3.7E-05 8.1E-10 74.3 8.5 27 326-352 45-71 (214)
244 PF03215 Rad17: Rad17 cell cyc 97.9 4.9E-05 1.1E-09 82.7 10.3 32 326-357 46-77 (519)
245 COG1224 TIP49 DNA helicase TIP 97.9 1.8E-05 3.9E-10 81.8 6.4 63 274-362 40-104 (450)
246 cd01120 RecA-like_NTPases RecA 97.9 4.8E-05 1E-09 67.1 7.8 32 328-359 2-36 (165)
247 PF13191 AAA_16: AAA ATPase do 97.9 2.8E-05 6E-10 71.0 6.4 59 275-361 2-63 (185)
248 PF05621 TniB: Bacterial TniB 97.9 8.3E-05 1.8E-09 75.6 10.2 118 262-405 23-160 (302)
249 PF12775 AAA_7: P-loop contain 97.8 6.1E-05 1.3E-09 75.5 8.6 115 325-455 33-158 (272)
250 KOG0482 DNA replication licens 97.8 1.2E-05 2.5E-10 86.1 3.3 152 265-454 334-491 (721)
251 COG0464 SpoVK ATPases of the A 97.7 6.4E-05 1.4E-09 80.8 7.4 99 324-432 17-115 (494)
252 PF13207 AAA_17: AAA domain; P 97.7 3.1E-05 6.8E-10 66.5 3.9 31 328-358 2-32 (121)
253 PRK09087 hypothetical protein; 97.7 9.5E-05 2.1E-09 72.1 7.5 29 326-354 45-73 (226)
254 PRK15455 PrkA family serine pr 97.7 0.0002 4.3E-09 78.6 10.2 62 270-357 74-136 (644)
255 TIGR02688 conserved hypothetic 97.7 0.00019 4.1E-09 76.3 9.5 103 325-453 209-313 (449)
256 KOG3347 Predicted nucleotide k 97.6 0.00011 2.4E-09 67.9 6.6 36 325-362 7-42 (176)
257 PRK00131 aroK shikimate kinase 97.6 5.8E-05 1.3E-09 68.4 4.5 34 325-358 4-37 (175)
258 COG5271 MDN1 AAA ATPase contai 97.6 5.5E-05 1.2E-09 89.3 4.3 122 321-456 1539-1666(4600)
259 PHA00729 NTP-binding motif con 97.6 0.00014 3E-09 71.3 6.5 25 326-350 18-42 (226)
260 COG0703 AroK Shikimate kinase 97.6 0.00012 2.6E-09 68.9 5.7 35 326-360 3-37 (172)
261 PRK07276 DNA polymerase III su 97.6 0.00065 1.4E-08 69.0 11.3 89 326-430 25-130 (290)
262 PHA02774 E1; Provisional 97.5 0.00042 9.1E-09 76.0 10.5 100 325-458 434-536 (613)
263 PF03266 NTPase_1: NTPase; In 97.5 0.00014 2.9E-09 68.1 5.5 23 327-349 1-23 (168)
264 KOG0481 DNA replication licens 97.5 2.7E-05 5.9E-10 83.4 0.8 115 267-405 325-443 (729)
265 PRK13947 shikimate kinase; Pro 97.5 0.0001 2.2E-09 67.4 4.2 33 327-359 3-35 (171)
266 KOG2035 Replication factor C, 97.5 0.00066 1.4E-08 68.5 9.7 86 326-431 35-154 (351)
267 PRK13948 shikimate kinase; Pro 97.5 0.00025 5.4E-09 67.2 6.5 38 322-359 7-44 (182)
268 PRK07261 topology modulation p 97.4 0.00033 7E-09 65.2 7.0 34 327-360 2-35 (171)
269 PRK05818 DNA polymerase III su 97.4 0.00075 1.6E-08 67.5 9.8 91 325-430 7-114 (261)
270 KOG0479 DNA replication licens 97.4 0.00022 4.8E-09 77.6 6.3 144 267-454 295-450 (818)
271 PRK08118 topology modulation p 97.4 0.00013 2.8E-09 67.8 4.0 33 327-359 3-35 (167)
272 PRK03839 putative kinase; Prov 97.4 0.00014 2.9E-09 67.5 4.1 32 327-358 2-33 (180)
273 PRK07132 DNA polymerase III su 97.4 0.00082 1.8E-08 68.5 9.8 84 326-430 19-116 (299)
274 PRK00625 shikimate kinase; Pro 97.4 0.00016 3.6E-09 67.8 4.2 33 327-359 2-34 (173)
275 PF05729 NACHT: NACHT domain 97.4 0.00073 1.6E-08 60.1 8.1 78 327-405 2-96 (166)
276 cd00464 SK Shikimate kinase (S 97.4 0.00018 3.9E-09 64.1 4.2 32 327-358 1-32 (154)
277 PF01637 Arch_ATPase: Archaeal 97.3 0.00044 9.4E-09 64.8 6.5 25 326-350 21-45 (234)
278 COG1618 Predicted nucleotide k 97.3 0.0011 2.4E-08 62.1 9.0 24 326-349 6-29 (179)
279 COG1485 Predicted ATPase [Gene 97.3 0.0022 4.9E-08 66.5 12.1 107 322-461 62-177 (367)
280 PF05272 VirE: Virulence-assoc 97.3 0.0012 2.7E-08 63.3 9.6 94 326-455 53-150 (198)
281 cd01128 rho_factor Transcripti 97.3 0.00051 1.1E-08 68.2 6.9 83 325-407 16-120 (249)
282 PRK10536 hypothetical protein; 97.3 0.0021 4.5E-08 64.4 11.1 23 326-348 75-97 (262)
283 PF13604 AAA_30: AAA domain; P 97.3 0.0015 3.2E-08 62.2 9.6 90 326-430 19-119 (196)
284 KOG1942 DNA helicase, TBP-inte 97.3 0.0004 8.6E-09 70.6 5.7 64 274-363 39-104 (456)
285 PRK06217 hypothetical protein; 97.3 0.00027 5.8E-09 66.1 4.2 32 327-358 3-34 (183)
286 PF13671 AAA_33: AAA domain; P 97.3 0.00021 4.4E-09 63.0 3.1 29 328-356 2-30 (143)
287 PRK14532 adenylate kinase; Pro 97.3 0.00026 5.7E-09 65.9 4.0 30 327-356 2-31 (188)
288 PRK04296 thymidine kinase; Pro 97.2 0.0011 2.4E-08 62.7 8.1 30 327-356 4-36 (190)
289 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0022 4.7E-08 69.8 10.9 32 326-357 111-142 (634)
290 PRK06762 hypothetical protein; 97.2 0.00039 8.4E-09 63.4 4.6 37 326-362 3-39 (166)
291 PRK13949 shikimate kinase; Pro 97.2 0.00031 6.7E-09 65.4 4.0 34 326-359 2-35 (169)
292 TIGR01618 phage_P_loop phage n 97.1 0.0005 1.1E-08 67.2 4.9 24 324-347 11-34 (220)
293 PRK09376 rho transcription ter 97.1 0.00077 1.7E-08 71.2 6.5 82 325-407 169-273 (416)
294 PRK14530 adenylate kinase; Pro 97.1 0.00045 9.8E-09 66.2 4.4 31 326-356 4-34 (215)
295 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00044 9.4E-09 63.9 4.1 29 328-356 2-30 (183)
296 cd02020 CMPK Cytidine monophos 97.1 0.00043 9.3E-09 61.0 3.9 30 328-357 2-31 (147)
297 TIGR01313 therm_gnt_kin carboh 97.1 0.0011 2.4E-08 60.2 6.7 31 328-358 1-31 (163)
298 PRK13946 shikimate kinase; Pro 97.1 0.00045 9.8E-09 64.8 4.1 34 325-358 10-43 (184)
299 PRK05057 aroK shikimate kinase 97.1 0.00054 1.2E-08 63.8 4.5 35 325-359 4-38 (172)
300 cd01428 ADK Adenylate kinase ( 97.1 0.00048 1E-08 63.9 4.1 30 328-357 2-31 (194)
301 PF08298 AAA_PrkA: PrkA AAA do 97.1 0.0014 3.1E-08 68.0 7.9 54 271-349 59-112 (358)
302 PRK03731 aroL shikimate kinase 97.1 0.00054 1.2E-08 62.8 4.3 34 326-359 3-36 (171)
303 cd02021 GntK Gluconate kinase 97.1 0.00051 1.1E-08 61.5 3.9 30 328-357 2-31 (150)
304 PRK14531 adenylate kinase; Pro 97.1 0.00056 1.2E-08 64.0 4.3 31 326-356 3-33 (183)
305 PRK08154 anaerobic benzoate ca 97.1 0.0028 6E-08 64.6 9.5 35 325-359 133-167 (309)
306 COG3854 SpoIIIAA ncharacterize 97.0 0.0024 5.2E-08 63.2 8.4 80 325-404 137-232 (308)
307 PF13521 AAA_28: AAA domain; P 97.0 0.0011 2.3E-08 60.5 5.7 34 328-362 2-35 (163)
308 cd01124 KaiC KaiC is a circadi 97.0 0.0015 3.3E-08 60.0 6.7 31 328-358 2-35 (187)
309 cd02027 APSK Adenosine 5'-phos 97.0 0.0026 5.7E-08 57.8 7.9 35 328-362 2-39 (149)
310 cd00227 CPT Chloramphenicol (C 97.0 0.00064 1.4E-08 63.0 4.0 34 326-359 3-36 (175)
311 PHA02624 large T antigen; Prov 97.0 0.0017 3.7E-08 71.7 7.3 92 324-436 430-522 (647)
312 TIGR00767 rho transcription te 97.0 0.0016 3.6E-08 68.9 6.9 83 325-407 168-272 (415)
313 COG1936 Predicted nucleotide k 96.9 0.0024 5.1E-08 60.4 6.8 30 327-357 2-31 (180)
314 cd00046 DEXDc DEAD-like helica 96.9 0.0018 3.8E-08 54.6 5.3 23 327-349 2-24 (144)
315 PRK12608 transcription termina 96.9 0.0045 9.7E-08 65.0 9.4 82 325-406 133-236 (380)
316 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0023 4.9E-08 62.7 6.8 34 328-361 2-38 (249)
317 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.3E-08 65.1 4.4 33 326-358 7-39 (229)
318 PRK11823 DNA repair protein Ra 96.8 0.0041 8.9E-08 66.7 8.9 35 325-359 80-117 (446)
319 TIGR01526 nadR_NMN_Atrans nico 96.8 0.003 6.6E-08 64.9 7.4 38 326-363 163-200 (325)
320 PRK14528 adenylate kinase; Pro 96.8 0.0012 2.6E-08 62.2 4.1 32 326-357 2-33 (186)
321 COG0563 Adk Adenylate kinase a 96.8 0.0012 2.6E-08 62.4 4.0 28 327-354 2-29 (178)
322 PRK14974 cell division protein 96.8 0.019 4E-07 59.6 13.0 25 325-349 140-164 (336)
323 PF01583 APS_kinase: Adenylyls 96.8 0.0081 1.7E-07 55.9 9.2 38 326-363 3-43 (156)
324 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0014 3E-08 60.4 4.1 31 326-356 4-34 (188)
325 PF09848 DUF2075: Uncharacteri 96.8 0.0025 5.3E-08 65.9 6.4 24 326-349 2-25 (352)
326 COG0593 DnaA ATPase involved i 96.8 0.0017 3.7E-08 68.8 5.2 69 326-405 114-190 (408)
327 COG1116 TauB ABC-type nitrate/ 96.8 0.01 2.2E-07 59.0 10.2 27 323-349 27-53 (248)
328 PF13238 AAA_18: AAA domain; P 96.7 0.0011 2.4E-08 56.7 3.1 22 328-349 1-22 (129)
329 PRK02496 adk adenylate kinase; 96.7 0.0014 3.1E-08 60.9 4.0 30 327-356 3-32 (184)
330 COG5271 MDN1 AAA ATPase contai 96.7 0.012 2.6E-07 70.8 11.8 110 323-455 886-1009(4600)
331 TIGR01351 adk adenylate kinase 96.7 0.0015 3.2E-08 62.4 4.0 29 328-356 2-30 (210)
332 PF08433 KTI12: Chromatin asso 96.7 0.0041 9E-08 62.5 7.4 76 328-404 4-84 (270)
333 KOG0058 Peptide exporter, ABC 96.7 0.0063 1.4E-07 68.0 9.4 41 389-438 621-661 (716)
334 PRK06547 hypothetical protein; 96.7 0.0015 3.2E-08 61.3 3.9 33 326-358 16-48 (172)
335 cd01121 Sms Sms (bacterial rad 96.7 0.0019 4.1E-08 67.8 5.0 35 325-359 82-119 (372)
336 PRK06067 flagellar accessory p 96.7 0.0079 1.7E-07 58.2 9.0 36 323-358 23-61 (234)
337 KOG1808 AAA ATPase containing 96.7 0.0044 9.4E-08 75.4 8.4 116 326-455 441-561 (1856)
338 PF12780 AAA_8: P-loop contain 96.7 0.011 2.4E-07 59.4 10.1 69 325-400 31-99 (268)
339 PRK00279 adk adenylate kinase; 96.7 0.0018 3.9E-08 62.0 4.3 30 327-356 2-31 (215)
340 PLN02199 shikimate kinase 96.7 0.0031 6.7E-08 64.3 6.1 35 325-359 102-136 (303)
341 COG1102 Cmk Cytidylate kinase 96.6 0.0016 3.5E-08 61.1 3.6 28 328-355 3-30 (179)
342 TIGR02237 recomb_radB DNA repa 96.6 0.0027 5.8E-08 60.1 5.0 36 325-360 12-50 (209)
343 PLN02200 adenylate kinase fami 96.6 0.002 4.4E-08 63.2 4.3 30 325-354 43-72 (234)
344 PRK00771 signal recognition pa 96.6 0.029 6.3E-07 60.2 13.0 36 324-359 94-132 (437)
345 cd01131 PilT Pilus retraction 96.6 0.0071 1.5E-07 57.5 7.6 24 327-350 3-26 (198)
346 KOG1051 Chaperone HSP104 and r 96.6 0.012 2.6E-07 67.7 10.5 96 325-429 208-313 (898)
347 PRK04182 cytidylate kinase; Pr 96.6 0.0022 4.8E-08 58.5 4.0 30 327-356 2-31 (180)
348 PRK12723 flagellar biosynthesi 96.5 0.032 7E-07 59.0 12.8 25 325-349 174-198 (388)
349 PRK14021 bifunctional shikimat 96.5 0.0044 9.5E-08 68.0 6.6 34 326-359 7-40 (542)
350 PRK03846 adenylylsulfate kinas 96.5 0.014 3.1E-07 55.2 9.2 37 325-361 24-63 (198)
351 PF01443 Viral_helicase1: Vira 96.5 0.0023 5E-08 61.0 3.7 22 328-349 1-22 (234)
352 TIGR01448 recD_rel helicase, p 96.5 0.013 2.8E-07 66.5 9.9 90 325-429 338-441 (720)
353 TIGR02173 cyt_kin_arch cytidyl 96.5 0.0029 6.2E-08 57.4 3.9 30 328-357 3-32 (171)
354 PF05970 PIF1: PIF1-like helic 96.4 0.0086 1.9E-07 62.3 7.8 39 325-363 22-63 (364)
355 KOG1514 Origin recognition com 96.4 0.0052 1.1E-07 68.5 6.3 87 326-429 423-533 (767)
356 PRK14527 adenylate kinase; Pro 96.4 0.0026 5.7E-08 59.7 3.5 31 326-356 7-37 (191)
357 PHA02530 pseT polynucleotide k 96.4 0.0028 6.2E-08 63.2 3.9 30 326-355 3-33 (300)
358 PRK08099 bifunctional DNA-bind 96.4 0.012 2.5E-07 62.5 8.7 30 326-355 220-249 (399)
359 PF06745 KaiC: KaiC; InterPro 96.4 0.018 4E-07 55.2 9.3 36 323-358 17-56 (226)
360 PRK10078 ribose 1,5-bisphospho 96.4 0.0032 6.9E-08 59.0 3.9 30 326-355 3-32 (186)
361 PLN02674 adenylate kinase 96.4 0.0034 7.3E-08 62.3 4.2 31 326-356 32-62 (244)
362 PRK14722 flhF flagellar biosyn 96.4 0.035 7.7E-07 58.4 11.9 26 324-349 136-161 (374)
363 PRK01184 hypothetical protein; 96.3 0.0036 7.8E-08 58.1 3.9 29 327-356 3-31 (184)
364 PRK08233 hypothetical protein; 96.3 0.0042 9.1E-08 56.9 4.3 32 326-357 4-36 (182)
365 PRK14526 adenylate kinase; Pro 96.3 0.0039 8.4E-08 60.4 4.2 29 327-355 2-30 (211)
366 PRK04040 adenylate kinase; Pro 96.3 0.0037 8E-08 59.3 3.9 31 326-356 3-35 (188)
367 TIGR03499 FlhF flagellar biosy 96.3 0.035 7.6E-07 55.9 11.1 25 325-349 194-218 (282)
368 PRK00889 adenylylsulfate kinas 96.3 0.014 3E-07 53.8 7.6 35 326-360 5-42 (175)
369 COG0529 CysC Adenylylsulfate k 96.3 0.012 2.7E-07 56.0 7.2 38 326-363 24-64 (197)
370 cd03281 ABC_MSH5_euk MutS5 hom 96.3 0.017 3.7E-07 55.8 8.5 22 326-347 30-51 (213)
371 PRK05800 cobU adenosylcobinami 96.3 0.016 3.6E-07 54.2 8.1 33 327-359 3-35 (170)
372 PRK09361 radB DNA repair and r 96.3 0.0091 2E-07 57.3 6.5 35 325-359 23-60 (225)
373 PF00406 ADK: Adenylate kinase 96.3 0.003 6.6E-08 56.9 3.1 26 330-355 1-26 (151)
374 cd02019 NK Nucleoside/nucleoti 96.3 0.0048 1E-07 49.0 3.8 22 328-349 2-23 (69)
375 PRK08533 flagellar accessory p 96.3 0.031 6.8E-07 54.6 10.1 33 325-357 24-59 (230)
376 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0038 8.2E-08 56.5 3.4 27 326-352 23-49 (133)
377 PF13245 AAA_19: Part of AAA d 96.2 0.0067 1.5E-07 49.5 4.5 23 327-349 12-35 (76)
378 PF00448 SRP54: SRP54-type pro 96.2 0.024 5.2E-07 54.3 9.0 24 326-349 2-25 (196)
379 cd03283 ABC_MutS-like MutS-lik 96.2 0.037 8E-07 52.9 10.0 22 326-347 26-47 (199)
380 TIGR02768 TraA_Ti Ti-type conj 96.2 0.011 2.4E-07 67.3 7.4 80 325-405 368-454 (744)
381 PRK06696 uridine kinase; Valid 96.2 0.0054 1.2E-07 59.2 4.2 33 326-358 23-58 (223)
382 PRK10416 signal recognition pa 96.2 0.089 1.9E-06 54.1 13.3 25 325-349 114-138 (318)
383 PRK05541 adenylylsulfate kinas 96.2 0.0065 1.4E-07 56.1 4.5 37 325-361 7-46 (176)
384 cd03280 ABC_MutS2 MutS2 homolo 96.1 0.021 4.4E-07 54.2 7.9 21 326-346 29-49 (200)
385 KOG3354 Gluconate kinase [Carb 96.1 0.0049 1.1E-07 57.6 3.5 34 324-357 11-44 (191)
386 TIGR01425 SRP54_euk signal rec 96.1 0.079 1.7E-06 56.8 13.1 34 325-358 100-136 (429)
387 PF00931 NB-ARC: NB-ARC domain 96.1 0.0078 1.7E-07 59.2 5.2 23 326-348 20-42 (287)
388 PRK14529 adenylate kinase; Pro 96.1 0.0049 1.1E-07 60.4 3.6 28 327-354 2-29 (223)
389 cd03243 ABC_MutS_homologs The 96.1 0.021 4.5E-07 54.2 7.8 22 326-347 30-51 (202)
390 KOG0055 Multidrug/pheromone ex 96.1 0.04 8.6E-07 65.2 11.3 53 389-450 1143-1197(1228)
391 KOG2227 Pre-initiation complex 96.1 0.014 3E-07 62.7 6.9 101 275-405 152-271 (529)
392 cd03115 SRP The signal recogni 96.0 0.024 5.3E-07 52.0 7.8 32 328-359 3-37 (173)
393 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.03 6.5E-07 50.5 8.1 27 323-349 24-50 (144)
394 PLN02459 probable adenylate ki 96.0 0.007 1.5E-07 60.7 4.3 31 326-356 30-60 (261)
395 COG1373 Predicted ATPase (AAA+ 96.0 0.014 3.1E-07 61.7 6.8 70 327-404 39-108 (398)
396 PF00437 T2SE: Type II/IV secr 96.0 0.0012 2.5E-08 65.3 -1.3 27 325-351 127-153 (270)
397 TIGR00017 cmk cytidylate kinas 96.0 0.018 3.8E-07 56.0 6.9 29 327-355 4-32 (217)
398 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.053 1.1E-06 52.0 10.1 24 325-348 19-42 (235)
399 TIGR00455 apsK adenylylsulfate 96.0 0.045 9.7E-07 50.9 9.2 37 326-362 19-58 (184)
400 KOG2543 Origin recognition com 95.9 0.039 8.5E-07 58.1 9.5 61 272-360 5-65 (438)
401 COG1126 GlnQ ABC-type polar am 95.9 0.056 1.2E-06 53.2 9.8 25 323-347 26-50 (240)
402 TIGR01420 pilT_fam pilus retra 95.9 0.022 4.8E-07 58.9 7.6 25 326-350 123-147 (343)
403 cd01129 PulE-GspE PulE/GspE Th 95.9 0.0077 1.7E-07 60.2 4.1 25 326-350 81-105 (264)
404 COG4608 AppF ABC-type oligopep 95.9 0.032 6.9E-07 56.2 8.3 35 316-350 30-64 (268)
405 PRK12339 2-phosphoglycerate ki 95.9 0.0091 2E-07 57.3 4.3 29 326-354 4-32 (197)
406 PLN02165 adenylate isopentenyl 95.9 0.0081 1.8E-07 62.2 4.1 33 325-357 43-75 (334)
407 PF01202 SKI: Shikimate kinase 95.9 0.012 2.5E-07 53.9 4.7 27 334-360 1-27 (158)
408 TIGR02322 phosphon_PhnN phosph 95.9 0.0075 1.6E-07 55.6 3.5 24 327-350 3-26 (179)
409 PRK04220 2-phosphoglycerate ki 95.9 0.029 6.2E-07 57.4 8.0 29 325-353 92-120 (301)
410 COG2274 SunT ABC-type bacterio 95.9 0.027 5.8E-07 63.9 8.5 28 322-349 496-523 (709)
411 PF13479 AAA_24: AAA domain 95.8 0.015 3.2E-07 56.0 5.6 20 326-345 4-23 (213)
412 PF07931 CPT: Chloramphenicol 95.8 0.041 8.9E-07 52.0 8.3 37 327-363 3-39 (174)
413 TIGR02012 tigrfam_recA protein 95.8 0.041 9E-07 56.8 9.0 78 324-405 54-148 (321)
414 PRK13951 bifunctional shikimat 95.8 0.018 4E-07 62.5 6.7 33 327-359 2-34 (488)
415 cd03222 ABC_RNaseL_inhibitor T 95.8 0.059 1.3E-06 50.8 9.3 25 325-349 25-49 (177)
416 PRK13889 conjugal transfer rel 95.8 0.025 5.3E-07 66.2 8.0 90 325-429 362-458 (988)
417 PRK09825 idnK D-gluconate kina 95.8 0.011 2.3E-07 55.5 4.2 29 326-354 4-32 (176)
418 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.049 1.1E-06 54.1 9.0 35 324-358 35-72 (259)
419 TIGR00416 sms DNA repair prote 95.7 0.013 2.7E-07 63.1 5.2 35 325-359 94-131 (454)
420 PRK10875 recD exonuclease V su 95.7 0.056 1.2E-06 60.4 10.3 25 325-349 167-191 (615)
421 smart00534 MUTSac ATPase domai 95.7 0.034 7.4E-07 52.2 7.4 20 328-347 2-21 (185)
422 KOG1968 Replication factor C, 95.7 0.01 2.2E-07 68.4 4.4 90 327-429 359-456 (871)
423 TIGR02858 spore_III_AA stage I 95.7 0.035 7.5E-07 55.9 7.7 25 326-350 112-136 (270)
424 COG0283 Cmk Cytidylate kinase 95.7 0.022 4.7E-07 55.7 6.0 30 326-355 5-34 (222)
425 TIGR02788 VirB11 P-type DNA tr 95.7 0.012 2.7E-07 59.8 4.5 26 325-350 144-169 (308)
426 PF13086 AAA_11: AAA domain; P 95.7 0.0088 1.9E-07 55.9 3.2 22 328-349 20-41 (236)
427 KOG0055 Multidrug/pheromone ex 95.7 0.051 1.1E-06 64.3 9.9 28 323-350 377-404 (1228)
428 PRK13808 adenylate kinase; Pro 95.6 0.011 2.3E-07 61.4 4.0 30 327-356 2-31 (333)
429 KOG0056 Heavy metal exporter H 95.6 0.065 1.4E-06 58.2 9.9 38 314-351 553-590 (790)
430 cd00544 CobU Adenosylcobinamid 95.6 0.031 6.7E-07 52.3 6.8 32 328-359 2-33 (169)
431 PF01745 IPT: Isopentenyl tran 95.6 0.011 2.5E-07 57.8 3.9 33 328-360 4-36 (233)
432 cd01393 recA_like RecA is a b 95.6 0.048 1E-06 52.0 8.2 25 325-349 19-43 (226)
433 PRK05703 flhF flagellar biosyn 95.6 0.082 1.8E-06 56.5 10.7 25 325-349 221-245 (424)
434 cd03216 ABC_Carb_Monos_I This 95.6 0.062 1.3E-06 49.4 8.5 28 322-349 23-50 (163)
435 PRK12338 hypothetical protein; 95.6 0.012 2.5E-07 60.7 4.1 30 325-354 4-33 (319)
436 PRK13764 ATPase; Provisional 95.6 0.011 2.3E-07 65.8 4.0 25 326-350 258-282 (602)
437 TIGR01447 recD exodeoxyribonuc 95.6 0.031 6.8E-07 62.0 7.6 25 325-349 160-184 (586)
438 cd03284 ABC_MutS1 MutS1 homolo 95.6 0.045 9.8E-07 53.0 7.9 22 326-347 31-52 (216)
439 TIGR03263 guanyl_kin guanylate 95.6 0.01 2.2E-07 54.7 3.2 24 327-350 3-26 (180)
440 PRK00091 miaA tRNA delta(2)-is 95.6 0.012 2.7E-07 60.2 4.1 33 326-358 5-37 (307)
441 PF02562 PhoH: PhoH-like prote 95.6 0.016 3.6E-07 56.1 4.7 24 326-349 20-43 (205)
442 cd02022 DPCK Dephospho-coenzym 95.6 0.014 3E-07 54.4 4.1 29 328-357 2-30 (179)
443 cd00071 GMPK Guanosine monopho 95.5 0.013 2.8E-07 52.6 3.7 26 328-353 2-27 (137)
444 PRK00300 gmk guanylate kinase; 95.5 0.014 3E-07 54.9 4.1 26 325-350 5-30 (205)
445 smart00487 DEXDc DEAD-like hel 95.5 0.028 6.1E-07 50.3 5.9 24 326-349 25-49 (201)
446 TIGR01613 primase_Cterm phage/ 95.5 0.087 1.9E-06 53.3 10.1 28 326-353 77-104 (304)
447 PRK05480 uridine/cytidine kina 95.5 0.016 3.6E-07 54.9 4.6 26 325-350 6-31 (209)
448 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.057 1.2E-06 52.6 8.4 34 324-357 20-56 (237)
449 PRK05537 bifunctional sulfate 95.5 0.028 6.1E-07 62.2 6.9 37 326-362 393-433 (568)
450 COG1125 OpuBA ABC-type proline 95.5 0.045 9.9E-07 55.1 7.7 27 323-349 25-51 (309)
451 PF06048 DUF927: Domain of unk 95.5 0.14 3E-06 51.6 11.4 103 263-405 155-257 (286)
452 PRK11545 gntK gluconate kinase 95.5 0.01 2.2E-07 54.8 2.8 27 331-357 1-27 (163)
453 PRK13826 Dtr system oriT relax 95.4 0.029 6.3E-07 66.2 7.0 92 323-429 395-493 (1102)
454 PRK13975 thymidylate kinase; P 95.4 0.013 2.8E-07 54.7 3.4 27 326-352 3-29 (196)
455 PF00485 PRK: Phosphoribulokin 95.4 0.012 2.6E-07 55.5 3.2 23 328-350 2-24 (194)
456 COG4178 ABC-type uncharacteriz 95.4 0.049 1.1E-06 60.5 8.3 28 322-349 416-443 (604)
457 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.068 1.5E-06 51.4 8.4 22 326-347 30-51 (204)
458 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.082 1.8E-06 47.8 8.5 26 325-350 25-50 (157)
459 COG0552 FtsY Signal recognitio 95.4 0.17 3.8E-06 52.4 11.7 78 324-405 138-236 (340)
460 TIGR00064 ftsY signal recognit 95.4 0.04 8.8E-07 55.3 7.0 25 325-349 72-96 (272)
461 PRK12727 flagellar biosynthesi 95.4 0.14 3.1E-06 56.3 11.6 25 325-349 350-374 (559)
462 cd02024 NRK1 Nicotinamide ribo 95.3 0.016 3.5E-07 55.3 3.8 30 328-357 2-32 (187)
463 PF00519 PPV_E1_C: Papillomavi 95.3 0.037 8E-07 58.5 6.7 102 323-458 260-364 (432)
464 COG3172 NadR Predicted ATPase/ 95.3 0.03 6.4E-07 52.7 5.3 72 326-398 9-86 (187)
465 KOG0922 DEAH-box RNA helicase 95.3 0.084 1.8E-06 58.7 9.6 15 326-340 67-81 (674)
466 cd01672 TMPK Thymidine monopho 95.3 0.02 4.4E-07 52.6 4.2 22 328-349 3-24 (200)
467 cd02028 UMPK_like Uridine mono 95.3 0.021 4.6E-07 53.5 4.4 33 328-360 2-37 (179)
468 TIGR02655 circ_KaiC circadian 95.3 0.07 1.5E-06 57.8 8.9 35 324-358 262-299 (484)
469 PF02367 UPF0079: Uncharacteri 95.3 0.011 2.4E-07 52.9 2.3 27 326-352 16-42 (123)
470 PRK11174 cysteine/glutathione 95.2 0.077 1.7E-06 58.2 9.2 27 323-349 374-400 (588)
471 PRK12337 2-phosphoglycerate ki 95.2 0.069 1.5E-06 57.7 8.5 34 325-358 255-289 (475)
472 cd00983 recA RecA is a bacter 95.2 0.099 2.1E-06 54.1 9.3 81 325-405 55-148 (325)
473 TIGR02525 plasmid_TraJ plasmid 95.2 0.04 8.7E-07 57.9 6.6 24 326-349 150-173 (372)
474 PRK08356 hypothetical protein; 95.2 0.021 4.6E-07 53.9 4.0 28 326-354 6-33 (195)
475 PRK10867 signal recognition pa 95.2 0.29 6.2E-06 52.6 13.0 35 325-359 100-138 (433)
476 PRK00023 cmk cytidylate kinase 95.1 0.019 4E-07 56.0 3.6 30 326-355 5-34 (225)
477 COG3267 ExeA Type II secretory 95.1 0.053 1.2E-06 54.3 6.8 26 326-351 52-77 (269)
478 PRK04328 hypothetical protein; 95.1 0.1 2.3E-06 51.4 8.9 24 324-347 22-45 (249)
479 PRK05986 cob(I)alamin adenolsy 95.1 0.11 2.4E-06 49.9 8.7 81 325-405 22-130 (191)
480 PRK14730 coaE dephospho-CoA ki 95.1 0.022 4.7E-07 54.3 3.9 31 327-357 3-33 (195)
481 cd02023 UMPK Uridine monophosp 95.1 0.017 3.8E-07 54.2 3.3 22 328-349 2-23 (198)
482 TIGR02868 CydC thiol reductant 95.1 0.049 1.1E-06 59.0 7.0 29 321-349 357-385 (529)
483 TIGR00174 miaA tRNA isopenteny 95.1 0.024 5.2E-07 57.7 4.3 31 328-358 2-32 (287)
484 COG4088 Predicted nucleotide k 95.1 0.016 3.4E-07 56.7 2.8 23 328-350 4-26 (261)
485 cd00561 CobA_CobO_BtuR ATP:cor 95.1 0.14 3.1E-06 47.7 9.1 20 328-347 5-24 (159)
486 TIGR00235 udk uridine kinase. 95.1 0.018 3.9E-07 54.8 3.2 25 326-350 7-31 (207)
487 PF14516 AAA_35: AAA-like doma 95.1 0.1 2.2E-06 53.7 9.0 38 325-362 31-71 (331)
488 KOG2383 Predicted ATPase [Gene 95.1 0.039 8.5E-07 58.4 5.9 25 325-349 114-138 (467)
489 cd01130 VirB11-like_ATPase Typ 95.0 0.014 3.1E-07 54.7 2.5 26 325-350 25-50 (186)
490 PRK14737 gmk guanylate kinase; 95.0 0.021 4.6E-07 54.1 3.5 25 325-349 4-28 (186)
491 PRK06761 hypothetical protein; 95.0 0.025 5.3E-07 57.4 4.1 28 327-354 5-32 (282)
492 PLN02840 tRNA dimethylallyltra 95.0 0.025 5.5E-07 60.3 4.3 33 326-358 22-54 (421)
493 COG1132 MdlB ABC-type multidru 95.0 0.13 2.8E-06 56.3 10.0 33 318-350 348-380 (567)
494 TIGR02238 recomb_DMC1 meiotic 95.0 0.47 1E-05 48.8 13.4 25 323-347 94-118 (313)
495 PRK12678 transcription termina 95.0 0.079 1.7E-06 58.7 8.1 25 325-349 416-440 (672)
496 COG0467 RAD55 RecA-superfamily 95.0 0.12 2.6E-06 50.9 8.8 39 323-361 21-62 (260)
497 PRK09518 bifunctional cytidyla 94.9 0.022 4.9E-07 64.4 4.1 30 327-356 3-32 (712)
498 PF06414 Zeta_toxin: Zeta toxi 94.9 0.032 7E-07 52.8 4.6 39 325-363 15-54 (199)
499 PRK07667 uridine kinase; Provi 94.9 0.028 6E-07 53.2 4.1 34 326-359 18-54 (193)
500 COG2074 2-phosphoglycerate kin 94.9 0.093 2E-06 52.7 7.7 30 325-354 89-118 (299)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-38 Score=324.15 Aligned_cols=195 Identities=68% Similarity=0.970 Sum_probs=172.7
Q ss_pred CCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH--hhhccCCC-CCc-------------------h------h
Q 012525 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYH--ANLKKGSG-AEP-------------------K------T 311 (461)
Q Consensus 260 ~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~--~~~~~g~~-~s~-------------------~------~ 311 (461)
..|+|++|++.||++||||+.||++|..+|++||++|+| ..+++... .+. + .
T Consensus 132 ~~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~ 211 (564)
T KOG0745|consen 132 PPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQI 211 (564)
T ss_pred CCCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchh
Confidence 679999999999999999999999999999999999998 33322211 000 0 1
Q ss_pred hhhcccc-ccccccCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccC
Q 012525 312 AAAVDND-DNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ 390 (461)
Q Consensus 312 ~~~~~~~-~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~ 390 (461)
....+.. +.+++.+.||||+||+|+|||+||+.||+.+++||+..+|+.|++++|+|+++|..+.+++..+.+++++++
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQ 291 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQ 291 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHh
Confidence 2223333 388899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc-eeeecC-CeEEEecCCC
Q 012525 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA-VSKVSR-DNLYIKTSGL 454 (461)
Q Consensus 391 ~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r~~~r-d~IiI~TsNi 454 (461)
.||+||||+|+|..+..+.+..+|++++++|++||++|||..++++.. .++.++ +.+.|+|+||
T Consensus 292 qGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnI 357 (564)
T KOG0745|consen 292 QGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNI 357 (564)
T ss_pred cCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccce
Confidence 999999999999988888888899999999999999999999999888 667777 9999999997
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=282.16 Aligned_cols=181 Identities=62% Similarity=0.940 Sum_probs=169.6
Q ss_pred CCCCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCc
Q 012525 258 GEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSG 337 (461)
Q Consensus 258 ~~~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTG 337 (461)
...+|+|+|+.+.||++|+||++||++|..+|++||+|+.+.. ..+.++..++||||.||+|+|
T Consensus 46 ~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~----------------~~~dvEL~KSNILLiGPTGsG 109 (408)
T COG1219 46 LSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE----------------DNDDVELSKSNILLIGPTGSG 109 (408)
T ss_pred hccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC----------------CCCceeeeeccEEEECCCCCc
Confidence 3468999999999999999999999999999999999987542 123378889999999999999
Q ss_pred hHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccch
Q 012525 338 KTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (461)
Q Consensus 338 KTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~ 417 (461)
||+||+.||+.+++||...+++.++++||+|+++|.++.+++..+.+.++.++.|||||||||+++.+.+..+..+++|+
T Consensus 110 KTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 110 KTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred HHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999777888899999
Q ss_pred HHHHHHHHHHHhCceeeeecc-eeeecC-CeEEEecCCC
Q 012525 418 EGVQQALLKMLEGTETKTFAA-VSKVSR-DNLYIKTSGL 454 (461)
Q Consensus 418 ~~v~~aLL~~LEg~~v~i~~~-~r~~~r-d~IiI~TsNi 454 (461)
+++|++||++|||+..+++-. .|++|. ++|.|+|+|+
T Consensus 190 EGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NI 228 (408)
T COG1219 190 EGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNI 228 (408)
T ss_pred hHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccce
Confidence 999999999999999999877 999999 9999999996
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.93 E-value=3.9e-25 Score=231.54 Aligned_cols=179 Identities=66% Similarity=0.978 Sum_probs=154.5
Q ss_pred CCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHH
Q 012525 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (461)
Q Consensus 261 l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTt 340 (461)
+++|+++...|+++|+||+.||+.|..++++||+++.+.... .+.++....+|||+||||||||+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~---------------~~~~~~~~~~iLl~Gp~GtGKT~ 123 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKK---------------DDDVELQKSNILLIGPTGSGKTL 123 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhccccc---------------ccccccCCceEEEEcCCCCCHHH
Confidence 789999999999999999999999999999999988543110 01344556899999999999999
Q ss_pred HHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHH
Q 012525 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 341 LAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
+|++||+.++.||+.++++.+...+|+|.+.+..+..++..+.+.+..+.++||||||||++..++......++++++++
T Consensus 124 lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~v 203 (412)
T PRK05342 124 LAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGV 203 (412)
T ss_pred HHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHH
Confidence 99999999999999999999988899999988888888877777777789999999999999988555556788999999
Q ss_pred HHHHHHHHhCceeeeecc-eeeecC-CeEEEecCCC
Q 012525 421 QQALLKMLEGTETKTFAA-VSKVSR-DNLYIKTSGL 454 (461)
Q Consensus 421 ~~aLL~~LEg~~v~i~~~-~r~~~r-d~IiI~TsNi 454 (461)
|++||++||+..+.++.. .++++. ++++|+|+|+
T Consensus 204 Q~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 204 QQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred HHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 999999999988887654 555655 8999999998
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.92 E-value=8.6e-25 Score=228.61 Aligned_cols=182 Identities=65% Similarity=0.936 Sum_probs=155.1
Q ss_pred CCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchH
Q 012525 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKT 339 (461)
Q Consensus 260 ~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKT 339 (461)
.+++|.++...|+++|+||++||+.|..++++||+++....... ....++..+.++||+||||||||
T Consensus 64 ~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~-------------~~~~~~~~~~~iLL~GP~GsGKT 130 (413)
T TIGR00382 64 YLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK-------------SDNGVELSKSNILLIGPTGSGKT 130 (413)
T ss_pred CCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc-------------cccccccCCceEEEECCCCcCHH
Confidence 37899999999999999999999999999999999875310000 00124455689999999999999
Q ss_pred HHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 340 LLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 340 tLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
++|++||+.++.+|+.++++.+...+|+|.+.+..+..++..+.+.+..++++||||||||++..+++..+..+++++++
T Consensus 131 ~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~ 210 (413)
T TIGR00382 131 LLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEG 210 (413)
T ss_pred HHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchh
Confidence 99999999999999999999988788999988888888888777777888999999999999999877777788999999
Q ss_pred HHHHHHHHHhCceeeeecc-eeeecC-CeEEEecCCC
Q 012525 420 VQQALLKMLEGTETKTFAA-VSKVSR-DNLYIKTSGL 454 (461)
Q Consensus 420 v~~aLL~~LEg~~v~i~~~-~r~~~r-d~IiI~TsNi 454 (461)
+|++||++|||..++++.. .+.++. ++|+|+|+|+
T Consensus 211 vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 211 VQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred HHHHHHHHhhccceecccCCCccccCCCeEEEEcCCc
Confidence 9999999999877765543 566665 8999999998
No 5
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.6e-23 Score=208.38 Aligned_cols=150 Identities=27% Similarity=0.433 Sum_probs=123.5
Q ss_pred HHhhcCChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~--~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
|++ |.|+++||+.|+++|... +..+++.. ..+.+.|||.||||||||+||||+|.+
T Consensus 211 W~D-Iagl~~AK~lL~EAVvlPi~mPe~F~Gi---------------------rrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 211 WDD-IAGLHEAKKLLKEAVVLPIWMPEFFKGI---------------------RRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred hHh-hcchHHHHHHHHHHHhhhhhhHHHHhhc---------------------ccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 344 889999999999999754 33444433 334588999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
++..|+.++.++++ ++|.|++ |++++-+|..+++. .+++|||||||.|+..|... +.+.+++++.+.||.+|
T Consensus 269 c~tTFFNVSsstlt-SKwRGeS-EKlvRlLFemARfy----APStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQm 340 (491)
T KOG0738|consen 269 CGTTFFNVSSSTLT-SKWRGES-EKLVRLLFEMARFY----APSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQM 340 (491)
T ss_pred hcCeEEEechhhhh-hhhccch-HHHHHHHHHHHHHh----CCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHh
Confidence 99999999999999 5799999 99999999999877 79999999999999987654 67888899999999999
Q ss_pred hCceeeeecceeeecCCeEEEecCCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
||.+..... .+-.+++++||+.
T Consensus 341 DG~~~t~e~-----~k~VmVLAATN~P 362 (491)
T KOG0738|consen 341 DGVQGTLEN-----SKVVMVLAATNFP 362 (491)
T ss_pred hcccccccc-----ceeEEEEeccCCC
Confidence 976544221 1235667888864
No 6
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.84 E-value=1.2e-20 Score=196.90 Aligned_cols=103 Identities=45% Similarity=0.739 Sum_probs=87.6
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHH
Q 012525 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 263 t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLA 342 (461)
+|+++...|+++|+||++||+.|..++++||++.... .. ..-+..+.+|||+||||||||++|
T Consensus 2 tP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~---~~--------------~~~e~~p~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 2 TPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLN---EE--------------LKDEVTPKNILMIGPTGVGKTEIA 64 (441)
T ss_pred CHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccc---cc--------------cccccCCceEEEECCCCCCHHHHH
Confidence 7999999999999999999999999999999875321 00 011344689999999999999999
Q ss_pred HHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhh
Q 012525 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (461)
Q Consensus 343 raLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a 382 (461)
++||+.++.+|+.++++.+...+|+|.+.+..++.+|..+
T Consensus 65 raLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 65 RRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred HHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999988877899988888888877654
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2e-20 Score=189.86 Aligned_cols=153 Identities=28% Similarity=0.410 Sum_probs=116.2
Q ss_pred hcCChHHHHHHHHHHHHHHHHH--HHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kr--i~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
.|-|+++.++.|+++|..+.+. +|.. -| -.++++||||||||||||+||||+|++.+.
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~---~G-----------------I~PPKGVLLYGPPGTGKTLLAkAVA~~T~A 211 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEE---LG-----------------IDPPKGVLLYGPPGTGKTLLAKAVANQTDA 211 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHH---cC-----------------CCCCCceEeeCCCCCcHHHHHHHHHhccCc
Confidence 3899999999999999644321 2211 11 134689999999999999999999999999
Q ss_pred ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCc
Q 012525 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 352 pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~ 431 (461)
.|+.+..+++.+ +|+|+. .++++.+|..|... .++||||||||++..+|-..+.+.+..-.++.-.||..|||.
T Consensus 212 tFIrvvgSElVq-KYiGEG-aRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 212 TFIRVVGSELVQ-KYIGEG-ARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred eEEEeccHHHHH-HHhccc-hHHHHHHHHHHhhc----CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 999999999995 699999 79999999988766 899999999999999987666665544333444555556665
Q ss_pred eeeeecceeeecCCeEEEecCC----CCcCcCCC
Q 012525 432 ETKTFAAVSKVSRDNLYIKTSG----LDSKTLWP 461 (461)
Q Consensus 432 ~v~i~~~~r~~~rd~IiI~TsN----id~e~l~P 461 (461)
.-. .+.-+|++|| +|+..++|
T Consensus 286 D~~---------~nvKVI~ATNR~D~LDPALLRP 310 (406)
T COG1222 286 DPR---------GNVKVIMATNRPDILDPALLRP 310 (406)
T ss_pred CCC---------CCeEEEEecCCccccChhhcCC
Confidence 421 1566777777 34555554
No 8
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.82 E-value=4.1e-20 Score=192.87 Aligned_cols=104 Identities=43% Similarity=0.742 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHH
Q 012525 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (461)
Q Consensus 262 ~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtL 341 (461)
.+|+++...|+++|+||++||+.|..++++||++.... .+ ...+..+.++||+||||||||++
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~---~~--------------~~~e~~~~~ILliGp~G~GKT~L 66 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLP---EE--------------LRDEVTPKNILMIGPTGVGKTEI 66 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCC---cc--------------cccccCCceEEEECCCCCCHHHH
Confidence 48999999999999999999999999999988764211 00 11223358999999999999999
Q ss_pred HHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhh
Q 012525 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (461)
Q Consensus 342 AraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a 382 (461)
|++||+.++.+|+.++++.+.+.+|+|.+.+..++.++..+
T Consensus 67 Ar~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 67 ARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999988999988888888887766
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.6e-20 Score=195.29 Aligned_cols=152 Identities=30% Similarity=0.474 Sum_probs=120.4
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHH--HHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kr--i~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
|++ |-++++++.+|..++....++ ++.+ .| -..+.+|||+||||||||+||||+|++
T Consensus 510 W~d-IGaL~~vR~eL~~aI~~PiK~pd~~k~---lG-----------------i~~PsGvLL~GPPGCGKTLlAKAVANE 568 (802)
T KOG0733|consen 510 WDD-IGALEEVRLELNMAILAPIKRPDLFKA---LG-----------------IDAPSGVLLCGPPGCGKTLLAKAVANE 568 (802)
T ss_pred hhh-cccHHHHHHHHHHHHhhhccCHHHHHH---hC-----------------CCCCCceEEeCCCCccHHHHHHHHhhh
Confidence 344 889999999999999765332 2221 11 122688999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
.+..|+.+...+|. ++|+|+. |..++.+|.+++.+ .+|||||||||.|.+.|+..+ ..++.+++|+||..|
T Consensus 569 ag~NFisVKGPELl-NkYVGES-ErAVR~vFqRAR~s----aPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtEl 639 (802)
T KOG0733|consen 569 AGANFISVKGPELL-NKYVGES-ERAVRQVFQRARAS----APCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTEL 639 (802)
T ss_pred ccCceEeecCHHHH-HHHhhhH-HHHHHHHHHHhhcC----CCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHh
Confidence 99999999999999 4699999 99999999998865 899999999999999987644 334566999999999
Q ss_pred hCceeeeecceeeecCCeEEEecCC----CCcCcCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSG----LDSKTLWP 461 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsN----id~e~l~P 461 (461)
||.+-+ +...+|++|| +|+..++|
T Consensus 640 DGl~~R---------~gV~viaATNRPDiIDpAiLRP 667 (802)
T KOG0733|consen 640 DGLEER---------RGVYVIAATNRPDIIDPAILRP 667 (802)
T ss_pred cccccc---------cceEEEeecCCCcccchhhcCC
Confidence 987532 1456777777 34555554
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.8e-20 Score=200.19 Aligned_cols=155 Identities=28% Similarity=0.434 Sum_probs=124.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHH--HHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHY--KRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~--kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
|++ |-|.+++|..|.+.+..+. +.++.... ....+||||||||||||+||||+|.+
T Consensus 671 WdD-VGGLeevK~eIldTIqlPL~hpeLfssgl---------------------rkRSGILLYGPPGTGKTLlAKAVATE 728 (953)
T KOG0736|consen 671 WDD-VGGLEEVKTEILDTIQLPLKHPELFSSGL---------------------RKRSGILLYGPPGTGKTLLAKAVATE 728 (953)
T ss_pred hhc-ccCHHHHHHHHHHHhcCcccChhhhhccc---------------------cccceeEEECCCCCchHHHHHHHHhh
Confidence 444 8999999999999996432 22332222 22478999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
+...|+.+...++.. .|+|+. |..++++|++|+.. .||||||||+|.+.+.|+..+.+..+.++ ++++||..|
T Consensus 729 csL~FlSVKGPELLN-MYVGqS-E~NVR~VFerAR~A----~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAEL 801 (953)
T KOG0736|consen 729 CSLNFLSVKGPELLN-MYVGQS-EENVREVFERARSA----APCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAEL 801 (953)
T ss_pred ceeeEEeecCHHHHH-HHhcch-HHHHHHHHHHhhcc----CCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHh
Confidence 999999999999995 599999 99999999998754 89999999999999999887777777654 999999999
Q ss_pred hCceeeeecceeeecCCeEEEecCC----CCcCcCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSG----LDSKTLWP 461 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsN----id~e~l~P 461 (461)
||.... ...+..+|.+|| +|+..++|
T Consensus 802 Dgls~~-------~s~~VFViGATNRPDLLDpALLRP 831 (953)
T KOG0736|consen 802 DGLSDS-------SSQDVFVIGATNRPDLLDPALLRP 831 (953)
T ss_pred hcccCC-------CCCceEEEecCCCccccChhhcCC
Confidence 977632 123678888888 34555544
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.6e-19 Score=194.02 Aligned_cols=143 Identities=29% Similarity=0.385 Sum_probs=116.7
Q ss_pred cCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 275 VIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
|.|+|++|+.|+++|....+ ..|... ....+++||||||||||||++||+||++++.+
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~--------------------Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARF--------------------GISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHh--------------------cCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 78899999999999964322 111111 12346889999999999999999999999999
Q ss_pred eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCce
Q 012525 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTE 432 (461)
Q Consensus 353 fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~ 432 (461)
|+.+.+.++.. +|+|+. |+.++.+|+.++.. .++||||||||.+..+|++ +.+ ...++++++||+.|||..
T Consensus 496 FlsvkgpEL~s-k~vGeS-Er~ir~iF~kAR~~----aP~IiFfDEiDsi~~~R~g-~~~--~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 496 FLSVKGPELFS-KYVGES-ERAIREVFRKARQV----APCIIFFDEIDALAGSRGG-SSS--GVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred eeeccCHHHHH-HhcCch-HHHHHHHHHHHhhc----CCeEEehhhHHhHhhccCC-Ccc--chHHHHHHHHHHHccccc
Confidence 99999999994 699999 99999999998865 7899999999999999873 222 345679999999999876
Q ss_pred eeeecceeeecCCeEEEecCCCC
Q 012525 433 TKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 433 v~i~~~~r~~~rd~IiI~TsNid 455 (461)
.. ++.++|++||..
T Consensus 567 ~~---------k~V~ViAATNRp 580 (693)
T KOG0730|consen 567 AL---------KNVLVIAATNRP 580 (693)
T ss_pred cc---------CcEEEEeccCCh
Confidence 43 367888999854
No 12
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.80 E-value=1.8e-19 Score=176.76 Aligned_cols=145 Identities=32% Similarity=0.451 Sum_probs=114.2
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+||++||+.-+..+. |..--.....+ .++|||||||||||||++|++||++.
T Consensus 119 t~dd-ViGqEeAK~kcrli~~--yLenPe~Fg~W--------------------APknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 119 TLDD-VIGQEEAKRKCRLIME--YLENPERFGDW--------------------APKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred cHhh-hhchHHHHHHHHHHHH--HhhChHHhccc--------------------CcceeEEECCCCccHHHHHHHHhccc
Confidence 3455 9999999997665552 22211112222 26899999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.||+.+.++.+.. .++|+. ...++.++..+... .+||+||||+|++.-+|+..+...++| +++|+||..||
T Consensus 176 kvp~l~vkat~liG-ehVGdg-ar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVs--EiVNALLTelD 247 (368)
T COG1223 176 KVPLLLVKATELIG-EHVGDG-ARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELD 247 (368)
T ss_pred CCceEEechHHHHH-HHhhhH-HHHHHHHHHHHHhc----CCeEEEehhhhhhhhhhhHHHhcccHH--HHHHHHHHhcc
Confidence 99999999999985 488877 78889999888755 899999999999999998877777765 38999999999
Q ss_pred CceeeeecceeeecCCeEEEecCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
|..-+ ...+.|++||.
T Consensus 248 gi~en---------eGVvtIaaTN~ 263 (368)
T COG1223 248 GIKEN---------EGVVTIAATNR 263 (368)
T ss_pred CcccC---------CceEEEeecCC
Confidence 76532 24677777774
No 13
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4e-19 Score=176.87 Aligned_cols=146 Identities=24% Similarity=0.445 Sum_probs=118.0
Q ss_pred HHhhcCChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~--~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
|++ |.|++.||+.|+++|... +..++...+ .+.+.|||+|||||||+.||+++|.+
T Consensus 132 WsD-VAGLE~AKeALKEAVILPIKFPqlFtGkR---------------------~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 132 WSD-VAGLEGAKEALKEAVILPIKFPQLFTGKR---------------------KPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhh-hccchhHHHHHHhheeecccchhhhcCCC---------------------CcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 344 899999999999999754 333443332 23488999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
.+..|+.++.++|. ++|.|+. |+.+.++|..++.. +++||||||||.++..|+. ....+.+++...||..|
T Consensus 190 AnSTFFSvSSSDLv-SKWmGES-EkLVknLFemARe~----kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQM 260 (439)
T KOG0739|consen 190 ANSTFFSVSSSDLV-SKWMGES-EKLVKNLFEMAREN----KPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQM 260 (439)
T ss_pred cCCceEEeehHHHH-HHHhccH-HHHHHHHHHHHHhc----CCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhh
Confidence 99999999999999 5799999 99999999988866 8999999999999988654 33455677999999999
Q ss_pred hCceeeeecceeeecCCeEEEecCCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+|.-.+ ....+++.++|+.
T Consensus 261 qGVG~d--------~~gvLVLgATNiP 279 (439)
T KOG0739|consen 261 QGVGND--------NDGVLVLGATNIP 279 (439)
T ss_pred hccccC--------CCceEEEecCCCc
Confidence 965432 1246777788864
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3e-19 Score=188.03 Aligned_cols=155 Identities=25% Similarity=0.381 Sum_probs=120.8
Q ss_pred CHHHH-HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHH
Q 012525 263 TPKEI-CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (461)
Q Consensus 263 t~~el-~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtL 341 (461)
.|... ...+++ |.|.|+||+.|++.|. |.+--.. +-......+++|||.||||||||+|
T Consensus 294 ~p~~~~nv~F~d-VkG~DEAK~ELeEiVe--fLkdP~k-----------------ftrLGGKLPKGVLLvGPPGTGKTlL 353 (752)
T KOG0734|consen 294 DPEQMKNVTFED-VKGVDEAKQELEEIVE--FLKDPTK-----------------FTRLGGKLPKGVLLVGPPGTGKTLL 353 (752)
T ss_pred Chhhhccccccc-ccChHHHHHHHHHHHH--HhcCcHH-----------------hhhccCcCCCceEEeCCCCCchhHH
Confidence 34333 444555 9999999999999884 2211111 1111224468899999999999999
Q ss_pred HHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHH
Q 012525 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (461)
Q Consensus 342 AraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~ 421 (461)
|||+|.+.++||+....+++.+. |+|.. .+.++.+|..+... .||||||||||.+..+|...... ..++.+
T Consensus 354 ARAvAGEA~VPFF~~sGSEFdEm-~VGvG-ArRVRdLF~aAk~~----APcIIFIDEiDavG~kR~~~~~~---y~kqTl 424 (752)
T KOG0734|consen 354 ARAVAGEAGVPFFYASGSEFDEM-FVGVG-ARRVRDLFAAAKAR----APCIIFIDEIDAVGGKRNPSDQH---YAKQTL 424 (752)
T ss_pred HHHhhcccCCCeEeccccchhhh-hhccc-HHHHHHHHHHHHhc----CCeEEEEechhhhcccCCccHHH---HHHHHH
Confidence 99999999999999999999865 89988 79999999988765 89999999999999987644332 456689
Q ss_pred HHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 422 QALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 422 ~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
|+||..|||...+ ...|+|++||+.
T Consensus 425 NQLLvEmDGF~qN---------eGiIvigATNfp 449 (752)
T KOG0734|consen 425 NQLLVEMDGFKQN---------EGIIVIGATNFP 449 (752)
T ss_pred HHHHHHhcCcCcC---------CceEEEeccCCh
Confidence 9999999988755 257999999964
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.3e-19 Score=192.46 Aligned_cols=150 Identities=27% Similarity=0.394 Sum_probs=120.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ |.|.|+||+.|.+.|. |.+ ...++.+.-+..++++||+||||||||+||||+|.+.
T Consensus 309 ~FkD-VAG~deAK~El~E~V~--fLK-----------------NP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 309 KFKD-VAGVDEAKEELMEFVK--FLK-----------------NPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred cccc-ccCcHHHHHHHHHHHH--Hhc-----------------CHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 4555 9999999999999993 221 1122333345667999999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhc-cccccccchHHHHHHHHHHH
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES-LNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~-~~~~~~~s~~~v~~aLL~~L 428 (461)
++||+.++++++.+. ++|.. ...++.+|..+..+ .|+||||||||.+...|.. .........+..+|+||..|
T Consensus 369 gVPF~svSGSEFvE~-~~g~~-asrvr~lf~~ar~~----aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em 442 (774)
T KOG0731|consen 369 GVPFFSVSGSEFVEM-FVGVG-ASRVRDLFPLARKN----APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM 442 (774)
T ss_pred CCceeeechHHHHHH-hcccc-hHHHHHHHHHhhcc----CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh
Confidence 999999999999975 77776 78999999988766 7999999999999999842 33355566778999999999
Q ss_pred hCceeeeecceeeecCCeEEEecCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
||.... ...|++++||.
T Consensus 443 Dgf~~~---------~~vi~~a~tnr 459 (774)
T KOG0731|consen 443 DGFETS---------KGVIVLAATNR 459 (774)
T ss_pred cCCcCC---------CcEEEEeccCC
Confidence 987543 24688888883
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.2e-18 Score=181.68 Aligned_cols=150 Identities=29% Similarity=0.398 Sum_probs=119.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHh--hhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHA--NLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~--~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|.+ |-|.+.....|.+.+.. +.+. ....| -.++++|||+||||||||+||++||.
T Consensus 188 ~f~d-iGG~d~~~~el~~li~~----i~~Pe~~~~lG-----------------v~PprGvLlHGPPGCGKT~lA~AiAg 245 (802)
T KOG0733|consen 188 SFSD-IGGLDKTLAELCELIIH----IKHPEVFSSLG-----------------VRPPRGVLLHGPPGCGKTSLANAIAG 245 (802)
T ss_pred chhh-ccChHHHHHHHHHHHHH----hcCchhHhhcC-----------------CCCCCceeeeCCCCccHHHHHHHHhh
Confidence 4444 89999999999888742 1111 11111 23468999999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
++++||+.+.+.++. .++.|+. |+.++++|+.+... .++|+||||||++.++|+. ......++++.+||..
T Consensus 246 el~vPf~~isApeiv-SGvSGES-EkkiRelF~~A~~~----aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~ 316 (802)
T KOG0733|consen 246 ELGVPFLSISAPEIV-SGVSGES-EKKIRELFDQAKSN----APCIVFIDEIDAITPKREE---AQREMERRIVAQLLTS 316 (802)
T ss_pred hcCCceEeecchhhh-cccCccc-HHHHHHHHHHHhcc----CCeEEEeecccccccchhh---HHHHHHHHHHHHHHHh
Confidence 999999999999999 6899999 89999999998766 8999999999999999875 4455667899999999
Q ss_pred HhCceeeeecceeeecCCeEEEecCCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
||+-..... .....++|.+||..
T Consensus 317 mD~l~~~~~-----~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 317 MDELSNEKT-----KGDPVLVIGATNRP 339 (802)
T ss_pred hhccccccc-----CCCCeEEEecCCCC
Confidence 997654321 12358899888853
No 17
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.6e-18 Score=191.51 Aligned_cols=168 Identities=28% Similarity=0.372 Sum_probs=135.1
Q ss_pred CCCCCCCCCCCCCCCCHHH----HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccc
Q 012525 248 GGSRWGGSNLGEDLPTPKE----ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVEL 323 (461)
Q Consensus 248 ~~~~w~g~~l~~~l~t~~e----l~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~ 323 (461)
..++|+++++.+....+.+ +...|.+.|+||+.|++.+..++......+.... .
T Consensus 462 vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~----------------------r 519 (786)
T COG0542 462 VVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPN----------------------R 519 (786)
T ss_pred HHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCC----------------------C
Confidence 3688999999987766664 7888889999999999999999953322211111 1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhhhc-----------CcccccHHHHHHHHHHhhchhhhcc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAA 389 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~~~-----------g~vGe~~e~~L~~lf~~a~~~v~~a 389 (461)
+....||.||+|+|||.||++||..+. ..+++++++++.+. ||+|......|.+.....
T Consensus 520 PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~------- 592 (786)
T COG0542 520 PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK------- 592 (786)
T ss_pred CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcC-------
Confidence 124689999999999999999999996 68999999987754 899988777777776544
Q ss_pred CceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 390 ~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
..+||+||||++..++ +++.||++||.+..+......-..+++|+|.|||++.+.
T Consensus 593 PySViLlDEIEKAHpd--------------V~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~ 647 (786)
T COG0542 593 PYSVILLDEIEKAHPD--------------VFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEE 647 (786)
T ss_pred CCeEEEechhhhcCHH--------------HHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHH
Confidence 4569999999999999 999999999999888766655555699999999999764
No 18
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.7e-17 Score=167.57 Aligned_cols=102 Identities=42% Similarity=0.756 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHH
Q 012525 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (461)
Q Consensus 262 ~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtL 341 (461)
.||+++...||++|+||++||+.+..++.|+|.+..-.. .-.-+..+.|||+.||+|+|||.+
T Consensus 4 ~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~-----------------~lr~EV~PKNILMIGpTGVGKTEI 66 (444)
T COG1220 4 MTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEE-----------------ELRDEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_pred CCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCH-----------------HHhhccCccceEEECCCCCcHHHH
Confidence 589999999999999999999999999999998754221 112345689999999999999999
Q ss_pred HHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHH
Q 012525 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLA 380 (461)
Q Consensus 342 AraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~ 380 (461)
||.||+..+.||+.+.++-+++.||+|.+++++++.+..
T Consensus 67 ARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve 105 (444)
T COG1220 67 ARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVE 105 (444)
T ss_pred HHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999887665
No 19
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=7.7e-17 Score=180.07 Aligned_cols=166 Identities=20% Similarity=0.295 Sum_probs=120.6
Q ss_pred CCCCCCCCCCCCCCCHH----HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhcccccccccc
Q 012525 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (461)
Q Consensus 249 ~~~w~g~~l~~~l~t~~----el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 324 (461)
.++|+++++........ .+.+.|.+.|+||++|++.|..++......+... ..+
T Consensus 430 ~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~----------------------~kp 487 (758)
T PRK11034 430 VARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHE----------------------HKP 487 (758)
T ss_pred HHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCC----------------------CCC
Confidence 57899988876554443 5778888889999999999999985332211100 011
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhc-----------CcccccHHHHHHHHHHhhchhhhccCceE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~-----------g~vGe~~e~~L~~lf~~a~~~v~~a~~gV 393 (461)
..++||+||||||||++|++||+.++.+|+.++++++.+. +|+|......+...+. ....+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~-------~~p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH-------hCCCcE
Confidence 2569999999999999999999999999999999876531 3444432333433332 235689
Q ss_pred EEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 394 LfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
|||||||++.+. +++.||++||++.+..........++.|+|.|||.+.+
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 999999999988 99999999998877643322222348999999998754
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.5e-17 Score=173.68 Aligned_cols=150 Identities=27% Similarity=0.369 Sum_probs=119.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.+ |.|.|++|+.|.+.|. +.+ ...++..--+.-+++|||.||||||||+|||++|.+.
T Consensus 148 ~F~D-VAG~dEakeel~EiVd--fLk-----------------~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 148 TFAD-VAGVDEAKEELSELVD--FLK-----------------NPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred Chhh-hcCcHHHHHHHHHHHH--HHh-----------------CchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 4455 8999999999999884 111 0111111122446889999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
++||+.++.++..+. |+|.. .+.++.+|.++... .+|||||||||++...|.....+.++..++.+++||..||
T Consensus 208 ~VPFf~iSGS~FVem-fVGvG-AsRVRdLF~qAkk~----aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD 281 (596)
T COG0465 208 GVPFFSISGSDFVEM-FVGVG-ASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 281 (596)
T ss_pred CCCceeccchhhhhh-hcCCC-cHHHHHHHHHhhcc----CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc
Confidence 999999999999975 88888 78999999988765 7899999999999999876656677778889999999999
Q ss_pred CceeeeecceeeecCCeEEEecCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
|...+ ...|+|++||.
T Consensus 282 GF~~~---------~gviviaaTNR 297 (596)
T COG0465 282 GFGGN---------EGVIVIAATNR 297 (596)
T ss_pred cCCCC---------CceEEEecCCC
Confidence 77522 24577777774
No 21
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.68 E-value=3.7e-16 Score=160.84 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=95.1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhh-hccCceEEEEcCcccc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV-EAAQQGMVYIDEVDKI 402 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v-~~a~~gVLfIDEID~L 402 (461)
.+..++|+||||||||++|+++|++++.+|+.+++.++. .+|+|+. |+.++.+|..+.... ...+++||||||||++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 357899999999999999999999999999999999999 5699999 999999999886543 3457999999999999
Q ss_pred chhhhccccccccchHHHHHHHHHHHhCce-eeeecc--eeeecCCeEEEecCCC
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLEGTE-TKTFAA--VSKVSRDNLYIKTSGL 454 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~-v~i~~~--~r~~~rd~IiI~TsNi 454 (461)
...|... ...+....+..+|+.+||+-. +..... ......+..+|+|+|.
T Consensus 225 ~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr 277 (413)
T PLN00020 225 AGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND 277 (413)
T ss_pred CCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC
Confidence 9987532 222222334579999998632 111111 1112235777888873
No 22
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.1e-16 Score=171.01 Aligned_cols=144 Identities=31% Similarity=0.423 Sum_probs=114.2
Q ss_pred cCChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 275 VIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~--~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
|.|..++|+.|.+.+..+ |..++....- ....+||||||||||||+||-++|..++..
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~pl--------------------r~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPL--------------------RLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCc--------------------ccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 789999999999999743 5555543211 124779999999999999999999999999
Q ss_pred eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCce
Q 012525 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTE 432 (461)
Q Consensus 353 fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~ 432 (461)
|+.+...++. .+|+|.. |..++.+|.++.. ++||||||||+|.+.++|+-++.+ +. ++++|+||..|||.+
T Consensus 729 fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDsTG--VT-DRVVNQlLTelDG~E 799 (952)
T KOG0735|consen 729 FISVKGPELL-SKYIGAS-EQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDSTG--VT-DRVVNQLLTELDGAE 799 (952)
T ss_pred EEEecCHHHH-HHHhccc-HHHHHHHHHHhhc----cCCeEEEeccccccCcccCCCCCC--ch-HHHHHHHHHhhcccc
Confidence 9999999999 4699999 8999999998864 599999999999999998654333 22 459999999999876
Q ss_pred eeeecceeeecCCeEEEecCCCC
Q 012525 433 TKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 433 v~i~~~~r~~~rd~IiI~TsNid 455 (461)
-... =.|+-+|+.+|
T Consensus 800 gl~G--------V~i~aaTsRpd 814 (952)
T KOG0735|consen 800 GLDG--------VYILAATSRPD 814 (952)
T ss_pred ccce--------EEEEEecCCcc
Confidence 4311 13555666654
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=6.8e-16 Score=149.67 Aligned_cols=129 Identities=27% Similarity=0.438 Sum_probs=81.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ ++||+.+++.+...+.... ..+ ....|+|||||||+||||||+.||+++
T Consensus 22 ~L~e-fiGQ~~l~~~l~i~i~aa~--------~r~------------------~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 22 SLDE-FIGQEHLKGNLKILIRAAK--------KRG------------------EALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp SCCC-S-S-HHHHHHHHHHHHHHH--------CTT------------------S---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred CHHH-ccCcHHHHhhhHHHHHHHH--------hcC------------------CCcceEEEECCCccchhHHHHHHHhcc
Confidence 4566 7999999999887773211 110 113689999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+|..+++..+... ..+..++... ..+.||||||||++.+. +++.|+..||
T Consensus 75 ~~~~~~~sg~~i~k~--------~dl~~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~LlpamE 126 (233)
T PF05496_consen 75 GVNFKITSGPAIEKA--------GDLAAILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAME 126 (233)
T ss_dssp T--EEEEECCC--SC--------HHHHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHHH
T ss_pred CCCeEeccchhhhhH--------HHHHHHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHhc
Confidence 999998887655431 2222333221 24669999999999999 9999999999
Q ss_pred Cceeeeecce------eeecC-CeEEEecCC
Q 012525 430 GTETKTFAAV------SKVSR-DNLYIKTSG 453 (461)
Q Consensus 430 g~~v~i~~~~------r~~~r-d~IiI~TsN 453 (461)
.+.+.+.... ....- .|.+|.+|+
T Consensus 127 d~~idiiiG~g~~ar~~~~~l~~FTligATT 157 (233)
T PF05496_consen 127 DGKIDIIIGKGPNARSIRINLPPFTLIGATT 157 (233)
T ss_dssp CSEEEEEBSSSSS-BEEEEE----EEEEEES
T ss_pred cCeEEEEeccccccceeeccCCCceEeeeec
Confidence 9988765441 22222 577775543
No 24
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.65 E-value=1.1e-16 Score=149.42 Aligned_cols=126 Identities=40% Similarity=0.557 Sum_probs=99.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC----ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~----pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
..++||+||+|||||.||++||+.+.. +++.++++.+.. +++.+..+..++......+...+.+||||||||
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 367999999999999999999999996 999999999886 222234455666666666666677799999999
Q ss_pred ccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 401 ~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
++.+. .+...+++.+.+++.||++||++.+...........+.|+|+|+|+...
T Consensus 79 Ka~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 79 KAHPS---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hcccc---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99996 4456788888899999999998888754432333348999999998754
No 25
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.64 E-value=7e-16 Score=172.40 Aligned_cols=166 Identities=22% Similarity=0.293 Sum_probs=120.5
Q ss_pred CCCCCCCCCCCCC----CCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhcccccccccc
Q 012525 249 GSRWGGSNLGEDL----PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (461)
Q Consensus 249 ~~~w~g~~l~~~l----~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 324 (461)
...|+++++.... ....++.+.|.+.|+||+.+++.|..++......+. . -...
T Consensus 426 i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~-----~-----------------~~~p 483 (731)
T TIGR02639 426 VAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLG-----N-----------------PNKP 483 (731)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCC-----C-----------------CCCC
Confidence 4568888765533 233468899999999999999999888842111000 0 0011
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhh-----------cCcccccHHHHHHHHHHhhchhhhccCceE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~-----------~g~vGe~~e~~L~~lf~~a~~~v~~a~~gV 393 (461)
..++||+||+|||||+||++||+.++.+++.++++++.+ .+|+|......+...+.. ...+|
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-------~p~~V 556 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-------HPHCV 556 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh-------CCCeE
Confidence 245899999999999999999999999999999887643 255665544445444432 35679
Q ss_pred EEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeec-CCeEEEecCCCCcCc
Q 012525 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVS-RDNLYIKTSGLDSKT 458 (461)
Q Consensus 394 LfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~-rd~IiI~TsNid~e~ 458 (461)
|||||||++.+. +++.|+++||++.+.... .+... ++.++|+|||++.+.
T Consensus 557 vllDEieka~~~--------------~~~~Ll~~ld~g~~~d~~-g~~vd~~~~iii~Tsn~g~~~ 607 (731)
T TIGR02639 557 LLLDEIEKAHPD--------------IYNILLQVMDYATLTDNN-GRKADFRNVILIMTSNAGASE 607 (731)
T ss_pred EEEechhhcCHH--------------HHHHHHHhhccCeeecCC-CcccCCCCCEEEECCCcchhh
Confidence 999999999988 999999999988776432 33333 389999999998653
No 26
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.9e-16 Score=150.44 Aligned_cols=135 Identities=27% Similarity=0.398 Sum_probs=105.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|.|.+-.|+.+++++...... ....++.| -.++++||||||||||||+||+++|+.....|+
T Consensus 157 iggld~qkqeireavelplt~-~~ly~qig-----------------idpprgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTH-ADLYKQIG-----------------IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred cccchhhHHHHHHHHhccchH-HHHHHHhC-----------------CCCCcceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 889999999999998632211 00111112 134689999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCcee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTET 433 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v 433 (461)
++..+++.+ +|.|+. ...++.+|..+..+ .++||||||||.+..+|=....+.+..-.+++-.||..|||...
T Consensus 219 rvvgsefvq-kylgeg-prmvrdvfrlaken----apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq 291 (408)
T KOG0727|consen 219 RVVGSEFVQ-KYLGEG-PRMVRDVFRLAKEN----APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ 291 (408)
T ss_pred eeccHHHHH-HHhccC-cHHHHHHHHHHhcc----CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc
Confidence 999999995 599999 78999999887765 78999999999999998766666665555566677777887643
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.3e-15 Score=162.49 Aligned_cols=145 Identities=32% Similarity=0.419 Sum_probs=111.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
+.|.+.+|+.+.+++....+.... ....+ ...+.++||+||||||||+||+++|.+++.+|+
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~-~~~~~-----------------~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi 305 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPEL-FRKLG-----------------LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFI 305 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHH-HHhcC-----------------CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEE
Confidence 678999999999998654332211 00000 122368999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETK 434 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~ 434 (461)
.++..++. .+|+|+. ++.++.+|..+... .++||||||||++...|...+ +.+.++++++||..|++....
T Consensus 306 ~v~~~~l~-sk~vGes-ek~ir~~F~~A~~~----~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 306 SVKGSELL-SKWVGES-EKNIRELFEKARKL----APSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred EeeCHHHh-ccccchH-HHHHHHHHHHHHcC----CCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCcc
Confidence 99999888 5799998 99999999988744 899999999999999975432 222356999999999865422
Q ss_pred eecceeeecCCeEEEecCCCC
Q 012525 435 TFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 435 i~~~~r~~~rd~IiI~TsNid 455 (461)
.+.++|+|||..
T Consensus 377 ---------~~v~vi~aTN~p 388 (494)
T COG0464 377 ---------EGVLVIAATNRP 388 (494)
T ss_pred ---------CceEEEecCCCc
Confidence 146778888853
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.62 E-value=2.7e-15 Score=167.67 Aligned_cols=146 Identities=25% Similarity=0.393 Sum_probs=111.5
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
|++ |.|++.+|+.|.+.+....+ .++... + ...+.++||+||||||||++|++||++
T Consensus 452 ~~d-i~g~~~~k~~l~~~v~~~~~~~~~~~~~---g-----------------~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 452 WSD-IGGLEEVKQELREAVEWPLKHPEIFEKM---G-----------------IRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhh-cccHHHHHHHHHHHHHhhhhCHHHHHhc---C-----------------CCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 444 89999999999998864322 221110 1 122467999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
++.+|+.+.++++.. +|+|+. +..++.+|..+... .++||||||||.|...|+.... ....++++++||..|
T Consensus 511 ~~~~fi~v~~~~l~~-~~vGes-e~~i~~~f~~A~~~----~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~l 582 (733)
T TIGR01243 511 SGANFIAVRGPEILS-KWVGES-EKAIREIFRKARQA----APAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEM 582 (733)
T ss_pred cCCCEEEEehHHHhh-cccCcH-HHHHHHHHHHHHhc----CCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHh
Confidence 999999999999884 699988 88899999887644 7899999999999988653221 223456899999999
Q ss_pred hCceeeeecceeeecCCeEEEecCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
++... ..+.++|+|||.
T Consensus 583 dg~~~---------~~~v~vI~aTn~ 599 (733)
T TIGR01243 583 DGIQE---------LSNVVVIAATNR 599 (733)
T ss_pred hcccC---------CCCEEEEEeCCC
Confidence 97431 135788888885
No 29
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=1.3e-15 Score=172.11 Aligned_cols=166 Identities=27% Similarity=0.339 Sum_probs=121.1
Q ss_pred CCCCCCCCCCCCCCCHH----HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhcccccccccc
Q 012525 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (461)
Q Consensus 249 ~~~w~g~~l~~~l~t~~----el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 324 (461)
.+.|+++++.+...... .+.+.|.+.|+||+.|++.|..++......+.... .+
T Consensus 481 ~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~----------------------~p 538 (821)
T CHL00095 481 VSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPN----------------------RP 538 (821)
T ss_pred HHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCC----------------------CC
Confidence 68899999887665543 48889999999999999999998854332221110 11
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhhh-----------cCcccccHHHHHHHHHHhhchhhhccC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~~-----------~g~vGe~~e~~L~~lf~~a~~~v~~a~ 390 (461)
...+||+||+|||||+||++||+.+. .+++.++++++.+ .+|+|......+...+.. ..
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-------~p 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-------KP 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh-------CC
Confidence 13589999999999999999999873 5788888876532 245555433444443322 24
Q ss_pred ceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 391 ~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
.+||||||||++.+. +++.|+++||.+.+..........++.|+|.|||++..
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~ 664 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSK 664 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchH
Confidence 579999999999988 99999999998877654432222348999999998754
No 30
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.62 E-value=2e-15 Score=161.69 Aligned_cols=150 Identities=29% Similarity=0.369 Sum_probs=108.0
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+|++.+|+.|.+.+.. .+. .......+ ...+.++||+||||||||++|++||+++
T Consensus 53 ~~~d-i~g~~~~k~~l~~~~~~-l~~-~~~~~~~g-----------------~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 53 TFKD-VAGIDEAKEELMEIVDF-LKN-PSKFTKLG-----------------AKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CHHH-hCCHHHHHHHHHHHHHH-HHC-HHHHHhcC-----------------CCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 4666 89999999999987742 110 00000011 1234789999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+|+.++++++.. .+.|.. +..++.+|..+... .++||||||||.+..++.......+.....+++.||..|+
T Consensus 113 ~~~~~~i~~~~~~~-~~~g~~-~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d 186 (495)
T TIGR01241 113 GVPFFSISGSDFVE-MFVGVG-ASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 186 (495)
T ss_pred CCCeeeccHHHHHH-HHhccc-HHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhc
Confidence 99999999998874 366766 67888888776543 6889999999999988654322333344568889999998
Q ss_pred CceeeeecceeeecCCeEEEecCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
+..-. ...++|+|||.
T Consensus 187 ~~~~~---------~~v~vI~aTn~ 202 (495)
T TIGR01241 187 GFGTN---------TGVIVIAATNR 202 (495)
T ss_pred cccCC---------CCeEEEEecCC
Confidence 54311 14678888875
No 31
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.62 E-value=4.1e-15 Score=159.19 Aligned_cols=140 Identities=25% Similarity=0.356 Sum_probs=101.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|.|++.+|+.|...... +.. .....+ ...+++|||+||||||||++|+++|++++.+|+
T Consensus 230 vgGl~~lK~~l~~~~~~-~~~---~~~~~g-----------------l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~ 288 (489)
T CHL00195 230 IGGLDNLKDWLKKRSTS-FSK---QASNYG-----------------LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL 288 (489)
T ss_pred hcCHHHHHHHHHHHHHH-hhH---HHHhcC-----------------CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 89999999988764421 110 001111 123578999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETK 434 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~ 434 (461)
.+++..+. .+|+|+. +..++.+|..+.. ..++||||||||++...+.... ......++++.|+..|++..
T Consensus 289 ~l~~~~l~-~~~vGes-e~~l~~~f~~A~~----~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~~~-- 358 (489)
T CHL00195 289 RLDVGKLF-GGIVGES-ESRMRQMIRIAEA----LSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSEKK-- 358 (489)
T ss_pred EEEhHHhc-ccccChH-HHHHHHHHHHHHh----cCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhcCC--
Confidence 99999888 4689987 7888999976654 3799999999999887533211 12233457888888887421
Q ss_pred eecceeeecCCeEEEecCCC
Q 012525 435 TFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 435 i~~~~r~~~rd~IiI~TsNi 454 (461)
...++|+|+|.
T Consensus 359 ---------~~V~vIaTTN~ 369 (489)
T CHL00195 359 ---------SPVFVVATANN 369 (489)
T ss_pred ---------CceEEEEecCC
Confidence 24677888873
No 32
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.60 E-value=2.2e-15 Score=170.66 Aligned_cols=166 Identities=21% Similarity=0.297 Sum_probs=121.5
Q ss_pred CCCCCCCCCCCCCCCHH----HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhcccccccccc
Q 012525 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (461)
Q Consensus 249 ~~~w~g~~l~~~l~t~~----el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 324 (461)
.++|+++++.+...... ++.+.|.+.|+||+.|++.|..++......+.. . ..+
T Consensus 538 v~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~-----~-----------------~~p 595 (852)
T TIGR03345 538 VADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLED-----P-----------------RKP 595 (852)
T ss_pred HHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCC-----C-----------------CCC
Confidence 56899999987665444 488999999999999999999988532111100 0 011
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc-----------CcccccHHHHHHHHHHhhchhhhccC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~-----------g~vGe~~e~~L~~lf~~a~~~v~~a~ 390 (461)
...+||+||+|||||.+|++||+.+ ...|+.++++++.+. +|+|......+...+. ...
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~-------~~p 668 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVR-------RKP 668 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHH-------hCC
Confidence 2358999999999999999999988 347889998876532 5666553444444433 236
Q ss_pred ceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 391 ~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
.+||+||||+++.+. +++.|+++|+.+.+....+.....++.++|.|||++.+
T Consensus 669 ~svvllDEieka~~~--------------v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~ 721 (852)
T TIGR03345 669 YSVVLLDEVEKAHPD--------------VLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSD 721 (852)
T ss_pred CcEEEEechhhcCHH--------------HHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchH
Confidence 679999999999988 99999999998877654443222348999999999765
No 33
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.5e-15 Score=146.14 Aligned_cols=137 Identities=27% Similarity=0.443 Sum_probs=102.8
Q ss_pred HHhhcCChHHHHHHHHHHHHHHH--HHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHY--KRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~--kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
--+.|-|+++.++.|++.+..+. ..++.+. | -..+.+||||||||||||+||+++|..
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvKHPELF~aL---G-----------------IaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVKHPELFEAL---G-----------------IAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhccccCHHHHHhc---C-----------------CCCCcceEEecCCCCchhHHHHHHHhh
Confidence 34457788888888888775332 1222221 1 122578999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
..+.|++++.+++.+ +|+|+. ...++++|..++.. .++|||+||||.+...|...+.+.+..-.+..-.||..|
T Consensus 205 t~c~firvsgselvq-k~igeg-srmvrelfvmareh----apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql 278 (404)
T KOG0728|consen 205 TDCTFIRVSGSELVQ-KYIGEG-SRMVRELFVMAREH----APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL 278 (404)
T ss_pred cceEEEEechHHHHH-HHhhhh-HHHHHHHHHHHHhc----CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc
Confidence 999999999999995 599998 79999999988766 789999999999999887665555544333444555566
Q ss_pred hCcee
Q 012525 429 EGTET 433 (461)
Q Consensus 429 Eg~~v 433 (461)
||.+.
T Consensus 279 dgfea 283 (404)
T KOG0728|consen 279 DGFEA 283 (404)
T ss_pred ccccc
Confidence 66543
No 34
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.60 E-value=9e-15 Score=153.11 Aligned_cols=148 Identities=26% Similarity=0.396 Sum_probs=105.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+++ |.|++.+|+.|.+++...+. .++.. .+ ...+.++||+||||||||++|+++|+
T Consensus 143 ~~~d-igGl~~~k~~l~~~v~~pl~~~~~~~~---~G-----------------l~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 143 TYSD-IGGLDIQKQEIREAVELPLTCPELYEQ---IG-----------------IDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CHHH-cCCHHHHHHHHHHHHHHHhcCHHHHHh---cC-----------------CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455 89999999999999864432 12211 11 12357899999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
.++.+|+.+.++.+.. .|+|+. +..++.+|..+.. ..++||||||||.+..+|.....+.+.....++..|+..
T Consensus 202 ~l~~~fi~i~~s~l~~-k~~ge~-~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ 275 (398)
T PTZ00454 202 HTTATFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ 275 (398)
T ss_pred hcCCCEEEEehHHHHH-Hhcchh-HHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH
Confidence 9999999999988874 578876 6778888876653 378999999999998876443333333333456667777
Q ss_pred HhCceeeeecceeeecCCeEEEecCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSG 453 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsN 453 (461)
|++... ..+.++|+|||
T Consensus 276 ld~~~~---------~~~v~VI~aTN 292 (398)
T PTZ00454 276 MDGFDQ---------TTNVKVIMATN 292 (398)
T ss_pred hhccCC---------CCCEEEEEecC
Confidence 764321 11456677776
No 35
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.7e-15 Score=154.62 Aligned_cols=161 Identities=24% Similarity=0.404 Sum_probs=125.5
Q ss_pred CCCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCC
Q 012525 259 EDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGS 336 (461)
Q Consensus 259 ~~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~--~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGT 336 (461)
..+..+.++...+++ |-|++.+|+.|++.|..+ ++.++. .........+|||+|||||
T Consensus 79 s~~v~p~~I~v~f~D-IggLe~v~~~L~e~VilPlr~pelF~-------------------~g~Ll~p~kGiLL~GPpG~ 138 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDD-IGGLEEVKDALQELVILPLRRPELFA-------------------KGKLLRPPKGILLYGPPGT 138 (386)
T ss_pred hcccchhhceeehhh-ccchHHHHHHHHHHHhhcccchhhhc-------------------ccccccCCccceecCCCCc
Confidence 345677788888888 899999999999998643 222321 1112235689999999999
Q ss_pred chHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccc
Q 012525 337 GKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (461)
Q Consensus 337 GKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s 416 (461)
|||++|+++|++.+..|+.+..+.++. +|+|+. ++.++.+|..+... +|+||||||||.+...|. .+.+..
T Consensus 139 GKTmlAKA~Akeaga~fInv~~s~lt~-KWfgE~-eKlv~AvFslAsKl----~P~iIFIDEvds~L~~R~---s~dHEa 209 (386)
T KOG0737|consen 139 GKTMLAKAIAKEAGANFINVSVSNLTS-KWFGEA-QKLVKAVFSLASKL----QPSIIFIDEVDSFLGQRR---STDHEA 209 (386)
T ss_pred hHHHHHHHHHHHcCCCcceeeccccch-hhHHHH-HHHHHHHHhhhhhc----CcceeehhhHHHHHhhcc---cchHHH
Confidence 999999999999999999999999996 799988 89999999887744 899999999999998873 344545
Q ss_pred hHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 417 GEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 417 ~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
...+.++|....||..... ....+++++||..
T Consensus 210 ~a~mK~eFM~~WDGl~s~~-------~~rVlVlgATNRP 241 (386)
T KOG0737|consen 210 TAMMKNEFMALWDGLSSKD-------SERVLVLGATNRP 241 (386)
T ss_pred HHHHHHHHHHHhccccCCC-------CceEEEEeCCCCC
Confidence 5557888888888765431 1147888888854
No 36
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.59 E-value=1.9e-15 Score=140.73 Aligned_cols=128 Identities=24% Similarity=0.401 Sum_probs=93.0
Q ss_pred chhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHh----
Q 012525 309 PKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ---- 381 (461)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~---- 381 (461)
+.|+.+.+.+..++..+.+|||+|++||||+++|++|++.. +.||+.++|+.+.. +..-..+|..
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~--------~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE--------ELLESELFGHEKGA 77 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H--------HHHHHHHHEBCSSS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc--------chhhhhhhcccccc
Confidence 33344444444455566889999999999999999999966 46999999998764 2333445532
Q ss_pred -------hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 382 -------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 382 -------a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
..+.++.+++|+||||||+.|... +|..|+++|+...+.........+.++.+|+||+.
T Consensus 78 ~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 78 FTGARSDKKGLLEQANGGTLFLDEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp STTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccCCceeeccceEEeecchhhhHHH--------------HHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 235677889999999999999999 99999999998887766665555669999999998
Q ss_pred CcCc
Q 012525 455 DSKT 458 (461)
Q Consensus 455 d~e~ 458 (461)
++++
T Consensus 144 ~l~~ 147 (168)
T PF00158_consen 144 DLEE 147 (168)
T ss_dssp -HHH
T ss_pred CHHH
Confidence 8654
No 37
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.59 E-value=1e-14 Score=152.17 Aligned_cols=143 Identities=29% Similarity=0.461 Sum_probs=100.8
Q ss_pred hcCChHHHHHHHHHHHHHHHHH--HHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kr--i~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
.|.|.+++++.|.+.+...... ++. ..+ ...+.+|||+||||||||++|+++|+.++.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~---~~g-----------------~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFE---EVG-----------------IEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHH---hcC-----------------CCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 3899999999999988543221 111 111 123578999999999999999999999999
Q ss_pred ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH---
Q 012525 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML--- 428 (461)
Q Consensus 352 pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L--- 428 (461)
+|+.++++++.. .|.|+. +..++.+|..+... .++||||||||.+...|.....+.+ ..++..|++++
T Consensus 192 ~~i~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~----~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~l 262 (389)
T PRK03992 192 TFIRVVGSELVQ-KFIGEG-ARLVRELFELAREK----APSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAEM 262 (389)
T ss_pred CEEEeehHHHhH-hhccch-HHHHHHHHHHHHhc----CCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHhc
Confidence 999999999874 577776 67788888766543 6889999999999887654332222 22444444444
Q ss_pred hCceeeeecceeeecCCeEEEecCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
++... ..+.++|+|+|.
T Consensus 263 d~~~~---------~~~v~VI~aTn~ 279 (389)
T PRK03992 263 DGFDP---------RGNVKIIAATNR 279 (389)
T ss_pred cccCC---------CCCEEEEEecCC
Confidence 43210 125678888875
No 38
>CHL00176 ftsH cell division protein; Validated
Probab=99.58 E-value=8.8e-15 Score=161.07 Aligned_cols=150 Identities=25% Similarity=0.373 Sum_probs=106.2
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ |+|.+++|+.|.+.+.. .+. .......+ ...+.+|||+||||||||++|+++|.++
T Consensus 181 ~f~d-v~G~~~~k~~l~eiv~~-lk~-~~~~~~~g-----------------~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 181 TFRD-IAGIEEAKEEFEEVVSF-LKK-PERFTAVG-----------------AKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CHHh-ccChHHHHHHHHHHHHH-HhC-HHHHhhcc-----------------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4555 89999999999887742 110 00000011 1235789999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.||+.++++++... +.|.. ...++.+|..+.. ..++||||||||.+...|.......+...+.+++.||..||
T Consensus 241 ~~p~i~is~s~f~~~-~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d 314 (638)
T CHL00176 241 EVPFFSISGSEFVEM-FVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD 314 (638)
T ss_pred CCCeeeccHHHHHHH-hhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc
Confidence 999999999987743 55554 5667888877654 37889999999999887654333334444567788888887
Q ss_pred CceeeeecceeeecCCeEEEecCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
+... ..+.++|+|||.
T Consensus 315 g~~~---------~~~ViVIaaTN~ 330 (638)
T CHL00176 315 GFKG---------NKGVIVIAATNR 330 (638)
T ss_pred cccC---------CCCeeEEEecCc
Confidence 5431 124677888776
No 39
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.58 E-value=1.2e-14 Score=145.71 Aligned_cols=142 Identities=20% Similarity=0.278 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchH
Q 012525 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKT 339 (461)
Q Consensus 260 ~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKT 339 (461)
+.+..+++.+.|++.++|++.+|+.|.+.+... .+.....+.+. .......++||+||||||||
T Consensus 9 ~~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~--~~~~~r~~~g~--------------~~~~~~~~vll~G~pGTGKT 72 (284)
T TIGR02880 9 EASGITEVLDQLDRELIGLKPVKTRIREIAALL--LVERLRQRLGL--------------ASAAPTLHMSFTGNPGTGKT 72 (284)
T ss_pred hhccHHHHHHHHHHhccCHHHHHHHHHHHHHHH--HHHHHHHHhCC--------------CcCCCCceEEEEcCCCCCHH
Confidence 345678899999987999999999998877531 11111111120 01112468999999999999
Q ss_pred HHHHHHHHhcC-------CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc
Q 012525 340 LLAKTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 340 tLAraLA~~l~-------~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
++|+++|+.+. .+|+.+++.++.. .|+|+. +..+..++..+ .++|||||||+.|...+..
T Consensus 73 ~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~-~~~g~~-~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~---- 139 (284)
T TIGR02880 73 TVALRMAQILHRLGYVRKGHLVSVTRDDLVG-QYIGHT-APKTKEILKRA-------MGGVLFIDEAYYLYRPDNE---- 139 (284)
T ss_pred HHHHHHHHHHHHcCCcccceEEEecHHHHhH-hhcccc-hHHHHHHHHHc-------cCcEEEEechhhhccCCCc----
Confidence 99999998773 2799999988875 577766 34455555443 5689999999998643211
Q ss_pred cccchHHHHHHHHHHHhCc
Q 012525 413 RDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg~ 431 (461)
......+++.|++.|+..
T Consensus 140 -~~~~~~~~~~Ll~~le~~ 157 (284)
T TIGR02880 140 -RDYGQEAIEILLQVMENQ 157 (284)
T ss_pred -cchHHHHHHHHHHHHhcC
Confidence 112345889999999843
No 40
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.57 E-value=1.7e-14 Score=154.93 Aligned_cols=152 Identities=28% Similarity=0.373 Sum_probs=107.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+++ |.|++..++.|...+...+. .++... + ...++++||+||||||||++|+++|+
T Consensus 180 ~~~d-IgGl~~~i~~i~~~v~lp~~~~~l~~~~---g-----------------l~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 180 TYAD-IGGLDSQIEQIRDAVELPFLHPELYREY---D-----------------LKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred CHHH-cCChHHHHHHHHHHHHHHhhCHHHHHhc---c-----------------CCCCcceEEECCCCCcHHHHHHHHHH
Confidence 4555 89999999999999864322 122111 1 12257899999999999999999999
Q ss_pred hcCCc----------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccch
Q 012525 348 HVNVP----------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (461)
Q Consensus 348 ~l~~p----------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~ 417 (461)
++..+ |+.+...++. .+|+|+. +..++.+|..+........++||||||||.+...|+... +.+. .
T Consensus 239 eL~~~i~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~-e 314 (512)
T TIGR03689 239 SLAQRIGAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDV-E 314 (512)
T ss_pred hhccccccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchH-H
Confidence 98654 5566666666 3588876 778888888776554455789999999999998765321 1221 2
Q ss_pred HHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 418 EGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 418 ~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
..++++||..|++.... .+.++|+|||..
T Consensus 315 ~~il~~LL~~LDgl~~~---------~~ViVI~ATN~~ 343 (512)
T TIGR03689 315 TTVVPQLLSELDGVESL---------DNVIVIGASNRE 343 (512)
T ss_pred HHHHHHHHHHhcccccC---------CceEEEeccCCh
Confidence 45788999999864311 257888888853
No 41
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.57 E-value=5.5e-15 Score=141.73 Aligned_cols=139 Identities=23% Similarity=0.321 Sum_probs=84.9
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC--
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV-- 351 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~-- 351 (461)
.|+||+.+|+.|..++. ...||||+||||||||++|+.|+..+--
T Consensus 4 dI~GQe~aKrAL~iAAa---------------------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~ 50 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAA---------------------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLT 50 (206)
T ss_dssp CSSSTHHHHHHHHHHHH---------------------------------CC--EEEES-CCCTHHHHHHHHHHCS--CC
T ss_pred hhcCcHHHHHHHHHHHc---------------------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCc
Confidence 39999999999998882 2478999999999999999999987621
Q ss_pred --ceEE------ecc-----hhhhhcCcccccHHHHHHHHH----HhhchhhhccCceEEEEcCccccchhhhccccccc
Q 012525 352 --PFVI------ADA-----TTLTQAGYVGEDVESILYKLL----AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (461)
Q Consensus 352 --pfv~------i~~-----s~l~~~g~vGe~~e~~L~~lf----~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~ 414 (461)
..++ +.. ..+....+.-.........++ ....+.+..+++|||||||+..+...
T Consensus 51 ~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~--------- 121 (206)
T PF01078_consen 51 EEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS--------- 121 (206)
T ss_dssp EECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH---------
T ss_pred hHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH---------
Confidence 0000 000 000000000000001111122 22445678899999999999998888
Q ss_pred cchHHHHHHHHHHHhCceeeeecc--eeeecCCeEEEecCCCCcCcC
Q 012525 415 VSGEGVQQALLKMLEGTETKTFAA--VSKVSRDNLYIKTSGLDSKTL 459 (461)
Q Consensus 415 ~s~~~v~~aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsNid~e~l 459 (461)
++++|++.||.+.+.+... ...+|.+|++|+|+|..+--.
T Consensus 122 -----vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~ 163 (206)
T PF01078_consen 122 -----VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGY 163 (206)
T ss_dssp -----HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S-----
T ss_pred -----HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccc
Confidence 9999999999887776655 667788999999999876543
No 42
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.56 E-value=8.7e-15 Score=148.85 Aligned_cols=145 Identities=29% Similarity=0.380 Sum_probs=112.0
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHH
Q 012525 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 263 t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLA 342 (461)
....+...+.+.++|+++++..+..++. ...|+||.||||||||++|
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~---------------------------------~~~~vll~G~PG~gKT~la 60 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL---------------------------------AGGHVLLEGPPGVGKTLLA 60 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH---------------------------------cCCCEEEECCCCccHHHHH
Confidence 3445666777778998888887777762 2488999999999999999
Q ss_pred HHHHHhcCCceEEecch-hhhhcCcccccHHHHH---HHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchH
Q 012525 343 KTLARHVNVPFVIADAT-TLTQAGYVGEDVESIL---YKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (461)
Q Consensus 343 raLA~~l~~pfv~i~~s-~l~~~g~vGe~~e~~L---~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~ 418 (461)
+.+|+.++.+|+++.++ ++...+.+|....... ...+....+.+..+..+|+|+|||++..++
T Consensus 61 ~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------- 127 (329)
T COG0714 61 RALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------- 127 (329)
T ss_pred HHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------
Confidence 99999999999999998 6666556665533322 222222222232222369999999999998
Q ss_pred HHHHHHHHHHhCceeeeecce-eeecCCeEEEecCCC
Q 012525 419 GVQQALLKMLEGTETKTFAAV-SKVSRDNLYIKTSGL 454 (461)
Q Consensus 419 ~v~~aLL~~LEg~~v~i~~~~-r~~~rd~IiI~TsNi 454 (461)
++++||.+|++.++.+.... ...+..+++|+|+|.
T Consensus 128 -~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np 163 (329)
T COG0714 128 -VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP 163 (329)
T ss_pred -HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCc
Confidence 99999999999999998887 777779999999994
No 43
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-14 Score=142.75 Aligned_cols=131 Identities=26% Similarity=0.384 Sum_probs=98.8
Q ss_pred cCChHHHHHHHHHHHHHH---HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 275 VIGQEKAKKVLSVAVYNH---YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~---~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
|-|.++.++.|.+++... ..+.... + -.++.++|+|||||||||++||+.|...+.
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~l----g-----------------i~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMTHKEKFENL----G-----------------IRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred cccHHHHHHHHHHHhccccccHHHHHhc----C-----------------CCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 899999999999988532 2221111 1 123588999999999999999999999999
Q ss_pred ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCc
Q 012525 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 352 pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~ 431 (461)
.|+.+....+.+. |+|.. .+.++..|..+... .++||||||+|++..+|-..+...+..-.+..-.||..|||.
T Consensus 232 TFLKLAgPQLVQM-fIGdG-AkLVRDAFaLAKEk----aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGF 305 (424)
T KOG0652|consen 232 TFLKLAGPQLVQM-FIGDG-AKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 305 (424)
T ss_pred hHHHhcchHHHhh-hhcch-HHHHHHHHHHhhcc----CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCC
Confidence 9999999999965 88887 78999999877654 789999999999999987655555543223333444555555
Q ss_pred e
Q 012525 432 E 432 (461)
Q Consensus 432 ~ 432 (461)
.
T Consensus 306 s 306 (424)
T KOG0652|consen 306 S 306 (424)
T ss_pred C
Confidence 4
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.55 E-value=2.9e-14 Score=143.25 Aligned_cols=139 Identities=20% Similarity=0.264 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHHHH-HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHH
Q 012525 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (461)
Q Consensus 262 ~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~-~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTt 340 (461)
...+++.+.|++.++|++.+|+.|.+.+... +.++. ...+. .....+.|+||+||||||||+
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~---~~~g~--------------~~~~~~~~ill~G~pGtGKT~ 74 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLR---KNLGL--------------TSSNPGLHMSFTGSPGTGKTT 74 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH---HHcCC--------------CCCCCCceEEEECCCCCCHHH
Confidence 3567899999988999999999998877421 11111 11110 001124679999999999999
Q ss_pred HHHHHHHhcC-------CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccccc
Q 012525 341 LAKTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (461)
Q Consensus 341 LAraLA~~l~-------~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~ 413 (461)
+|+++|+.+. .+|+.++..++.. .|+|+. +.....++..+ .++||||||++.+...+..
T Consensus 75 lAr~la~~~~~~g~~~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~~----- 140 (287)
T CHL00181 75 VALKMADILYKLGYIKKGHLLTVTRDDLVG-QYIGHT-APKTKEVLKKA-------MGGVLFIDEAYYLYKPDNE----- 140 (287)
T ss_pred HHHHHHHHHHHcCCCCCCceEEecHHHHHH-HHhccc-hHHHHHHHHHc-------cCCEEEEEccchhccCCCc-----
Confidence 9999998762 3688999888874 477766 33345555443 5689999999998654211
Q ss_pred ccchHHHHHHHHHHHhCc
Q 012525 414 DVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 414 ~~s~~~v~~aLL~~LEg~ 431 (461)
...+..+++.|++.||..
T Consensus 141 ~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 141 RDYGSEAIEILLQVMENQ 158 (287)
T ss_pred cchHHHHHHHHHHHHhcC
Confidence 112345899999999853
No 45
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.55 E-value=2e-14 Score=163.12 Aligned_cols=165 Identities=29% Similarity=0.401 Sum_probs=117.1
Q ss_pred CCCCCCCCCCCCCCCHH----HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhcccccccccc
Q 012525 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (461)
Q Consensus 249 ~~~w~g~~l~~~l~t~~----el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 324 (461)
.+.|+++++........ ++.+.|.+.|+||+.+++.|..++......+... ..+
T Consensus 537 ~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~----------------------~~p 594 (852)
T TIGR03346 537 VSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDP----------------------NRP 594 (852)
T ss_pred HHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCC----------------------CCC
Confidence 57899998887654443 4778888889999999999999885321110000 011
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc-----------CcccccHHHHHHHHHHhhchhhhccC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~-----------g~vGe~~e~~L~~lf~~a~~~v~~a~ 390 (461)
...+||+||+|||||++|++||+.+ ..+|+.++++.+... +|+|......+...+. ...
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~-------~~p 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVR-------RKP 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHH-------cCC
Confidence 2468999999999999999999987 458999998765432 3444432233333332 224
Q ss_pred ceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeec-CCeEEEecCCCCcC
Q 012525 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVS-RDNLYIKTSGLDSK 457 (461)
Q Consensus 391 ~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~-rd~IiI~TsNid~e 457 (461)
.+|||||||+++.+. +++.||++|+.+.+..... +... ++.|+|+|||.+.+
T Consensus 668 ~~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~d~~g-~~vd~rn~iiI~TSn~g~~ 720 (852)
T TIGR03346 668 YSVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLTDGQG-RTVDFRNTVIIMTSNLGSQ 720 (852)
T ss_pred CcEEEEeccccCCHH--------------HHHHHHHHHhcCceecCCC-eEEecCCcEEEEeCCcchH
Confidence 569999999999998 9999999999887764332 3333 48999999999765
No 46
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3e-14 Score=140.70 Aligned_cols=129 Identities=26% Similarity=0.348 Sum_probs=98.5
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCce
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
.|-|..+.++.|++.+......- ......+ -.++.+||||||||||||++||++|+..+.-|
T Consensus 178 dvggckeqieklrevve~pll~p-erfv~lg-----------------idppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHP-ERFVNLG-----------------IDPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCH-HHHhhcC-----------------CCCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 38899999999988885322100 0011111 13468899999999999999999999999999
Q ss_pred EEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 354 v~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+++-.+++.+ +|+|+. ...++++|..+... +-|||||||||++...|=.++.+.+. ++|-++|+++.
T Consensus 240 irvigselvq-kyvgeg-armvrelf~martk----kaciiffdeidaiggarfddg~ggdn---evqrtmleli~ 306 (435)
T KOG0729|consen 240 IRVIGSELVQ-KYVGEG-ARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGGDN---EVQRTMLELIN 306 (435)
T ss_pred EeehhHHHHH-HHhhhh-HHHHHHHHHHhccc----ceEEEEeeccccccCccccCCCCCcH---HHHHHHHHHHH
Confidence 9999999995 699999 79999999988765 77899999999999887555544443 36666666554
No 47
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.54 E-value=8.8e-14 Score=137.07 Aligned_cols=132 Identities=18% Similarity=0.336 Sum_probs=90.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|++ ++|++.+|+.|.+.+... .+.....+.+. .......|+||+||||||||++|+++|+
T Consensus 2 ~~~l~~-~~Gl~~vk~~i~~~~~~~--~~~~~~~~~g~--------------~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 2 ERELSR-MVGLDEVKALIKEIYAWI--QINEKRKEEGL--------------KTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred hHHHHH-hcChHHHHHHHHHHHHHH--HHHHHHHHcCC--------------CCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 356777 799999999999887432 11111111111 1112347899999999999999999998
Q ss_pred hc-------CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHH
Q 012525 348 HV-------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 348 ~l-------~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
.+ ...++.+++.++.. .|+|+. +..+..+|..+ .++||||||||.|... .........
T Consensus 65 ~l~~~~~~~~~~~v~~~~~~l~~-~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~~ 129 (261)
T TIGR02881 65 LFKEMNVLSKGHLIEVERADLVG-EYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKEA 129 (261)
T ss_pred HHHhcCcccCCceEEecHHHhhh-hhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHHH
Confidence 75 23688888888874 477776 55666666544 4679999999998742 111123447
Q ss_pred HHHHHHHHhCc
Q 012525 421 QQALLKMLEGT 431 (461)
Q Consensus 421 ~~aLL~~LEg~ 431 (461)
++.|++.|+..
T Consensus 130 i~~Ll~~~e~~ 140 (261)
T TIGR02881 130 IDTLVKGMEDN 140 (261)
T ss_pred HHHHHHHHhcc
Confidence 89999999854
No 48
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.3e-14 Score=144.61 Aligned_cols=126 Identities=28% Similarity=0.407 Sum_probs=98.5
Q ss_pred cCChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 275 VIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~--~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
|-|++..++.|.+.+... ...++...- -.++.+|+|||+||||||+||+|+|+.....
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemG--------------------ikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMG--------------------IKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcC--------------------CCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 899999999999988532 122222211 1346889999999999999999999999999
Q ss_pred eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 353 fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
|+++-.+++.+ +|.|+. .+.++.+|..+... .++|+||||||++..+|=..+++.. +++|.++|++|.
T Consensus 247 FlRvvGseLiQ-kylGdG-pklvRqlF~vA~e~----apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLN 314 (440)
T KOG0726|consen 247 FLRVVGSELIQ-KYLGDG-PKLVRELFRVAEEH----APSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLN 314 (440)
T ss_pred hhhhhhHHHHH-HHhccc-hHHHHHHHHHHHhc----CCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHH
Confidence 99999999995 599988 79999999887655 7899999999999998755444433 346666655554
No 49
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.53 E-value=9.4e-16 Score=137.01 Aligned_cols=112 Identities=26% Similarity=0.261 Sum_probs=72.8
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecch-hhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s-~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
||||.|+||+|||++|++||+.++..|.++.++ ++...+..|..+...-...|....+.+ -..|+|+|||++..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPi---f~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPI---FTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChh---hhceeeecccccCCHH
Confidence 699999999999999999999999999999886 566554444321110001111111111 1249999999999999
Q ss_pred hhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+|++||++|+++++.+.......+..+++|+|.|..
T Consensus 78 --------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPV 113 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT
T ss_pred --------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcc
Confidence 999999999999999988889999999999999963
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.53 E-value=8.9e-14 Score=138.30 Aligned_cols=116 Identities=32% Similarity=0.503 Sum_probs=89.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|+++ +||+++|+.|...+.....+ + ....|+||+||||.||||||..+|+
T Consensus 22 P~~l~ef-iGQ~~vk~~L~ifI~AAk~r--------~------------------e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 22 PKTLDEF-IGQEKVKEQLQIFIKAAKKR--------G------------------EALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred cccHHHh-cChHHHHHHHHHHHHHHHhc--------C------------------CCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 4567775 99999999999988532221 1 1237999999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+++..+...+...+... .-+..++... ..+-||||||||+|.+. +...|+..
T Consensus 75 Emgvn~k~tsGp~leK~--------gDlaaiLt~L------e~~DVLFIDEIHrl~~~--------------vEE~LYpa 126 (332)
T COG2255 75 ELGVNLKITSGPALEKP--------GDLAAILTNL------EEGDVLFIDEIHRLSPA--------------VEEVLYPA 126 (332)
T ss_pred HhcCCeEecccccccCh--------hhHHHHHhcC------CcCCeEEEehhhhcChh--------------HHHHhhhh
Confidence 99999888877777643 2222333221 15569999999999998 88899999
Q ss_pred HhCceeeeecc
Q 012525 428 LEGTETKTFAA 438 (461)
Q Consensus 428 LEg~~v~i~~~ 438 (461)
||...+.+...
T Consensus 127 MEDf~lDI~IG 137 (332)
T COG2255 127 MEDFRLDIIIG 137 (332)
T ss_pred hhheeEEEEEc
Confidence 99988887755
No 51
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.52 E-value=6.4e-14 Score=121.04 Aligned_cols=111 Identities=30% Similarity=0.525 Sum_probs=85.0
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhh
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE 407 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~ 407 (461)
|||+||||||||++|+.+|+.++.+++.+++..+.. .+.+.. +..+...|..+.... .++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~-~~~~~~-~~~i~~~~~~~~~~~---~~~vl~iDe~d~l~~~~- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS-SYAGDS-EQKIRDFFKKAKKSA---KPCVLFIDEIDKLFPKS- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT-SSTTHH-HHHHHHHHHHHHHTS---TSEEEEEETGGGTSHHC-
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccc-cccccc-ccccccccccccccc---cceeeeeccchhccccc-
Confidence 699999999999999999999999999999999883 344444 777888887754331 47999999999999985
Q ss_pred ccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 408 SLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 408 ~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
..........+++.|+..|+..... ....++|+|+|.
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~ 111 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNS 111 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESS
T ss_pred --ccccccccccccceeeecccccccc--------cccceeEEeeCC
Confidence 1123333445888999999854321 225788999887
No 52
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.52 E-value=6.1e-14 Score=148.40 Aligned_cols=147 Identities=28% Similarity=0.400 Sum_probs=101.6
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+++ |.|++.+++.|.+++..... .++... + -..+.+|||+||||||||++|+++|++
T Consensus 182 ~~D-IgGl~~qi~~l~e~v~lpl~~p~~~~~~---g-----------------i~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 182 YAD-IGGLEQQIQEIKEAVELPLTHPELYDDI---G-----------------IKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHH-hcCHHHHHHHHHHHHHhhhhCHHHHHhc---C-----------------CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 444 89999999999998853221 111110 0 123478999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
++.+|+.+..+++.. .|+|+. +..++.+|..+... .++||||||||.+..+|.....+.+......+..||..|
T Consensus 241 l~~~fi~V~~seL~~-k~~Ge~-~~~vr~lF~~A~~~----~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L 314 (438)
T PTZ00361 241 TSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAEEN----APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL 314 (438)
T ss_pred hCCCEEEEecchhhh-hhcchH-HHHHHHHHHHHHhC----CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH
Confidence 999999999998875 477776 67788888766543 688999999999988765333222222223444556666
Q ss_pred hCceeeeecceeeecCCeEEEecCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSG 453 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsN 453 (461)
++... ..+.++|+|||
T Consensus 315 dg~~~---------~~~V~VI~ATN 330 (438)
T PTZ00361 315 DGFDS---------RGDVKVIMATN 330 (438)
T ss_pred hhhcc---------cCCeEEEEecC
Confidence 64321 11456777777
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.52 E-value=3.4e-14 Score=146.61 Aligned_cols=86 Identities=29% Similarity=0.431 Sum_probs=73.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
.+++|||||||||||||++||+..+..|..+++..-. .+.++.+++.+.......+..|||||||+++...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 6799999999999999999999999999999887543 4667888887766655567889999999999998
Q ss_pred hhccccccccchHHHHHHHHHHHhCceee
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEGTETK 434 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg~~v~ 434 (461)
.|+.||..||.+.+.
T Consensus 120 --------------QQD~lLp~vE~G~ii 134 (436)
T COG2256 120 --------------QQDALLPHVENGTII 134 (436)
T ss_pred --------------hhhhhhhhhcCCeEE
Confidence 899999999966543
No 54
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.52 E-value=4.9e-14 Score=160.02 Aligned_cols=166 Identities=27% Similarity=0.381 Sum_probs=116.1
Q ss_pred CCCCCCCCCCCCCCCHH----HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhcccccccccc
Q 012525 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (461)
Q Consensus 249 ~~~w~g~~l~~~l~t~~----el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 324 (461)
.++|+++++.+...... .+.+.|.+.|+||+.+++.|...+......+... ..+
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~----------------------~~p 597 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDP----------------------NRP 597 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCC----------------------CCC
Confidence 57899999988765543 4788888889999999999999884221111000 001
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc-----------CcccccHHHHHHHHHHhhchhhhccC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~-----------g~vGe~~e~~L~~lf~~a~~~v~~a~ 390 (461)
...+||+||+|||||++|++||+.+ +.+|+.++++++... +|+|......+...+. ...
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~-------~~p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR-------RRP 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH-------hCC
Confidence 1368999999999999999999987 357899998876432 2334332223332222 224
Q ss_pred ceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 391 ~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
.+|||||||+++.+. +++.|+++|+.+.+..........++.++|.|||.+.+
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~ 723 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD 723 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchH
Confidence 579999999999988 99999999997766542222222337899999999754
No 55
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.9e-14 Score=146.95 Aligned_cols=148 Identities=29% Similarity=0.392 Sum_probs=114.4
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCce
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
.+.|++.+|+.|.+++.....+- +.........+.+||.||||||||+|+++||.+++..|
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~-------------------d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRP-------------------DLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccch-------------------HhhhccccccchhheecCCCCchHHHHHHHHhhhcceE
Confidence 37899999999999886432210 11122223347899999999999999999999999999
Q ss_pred EEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCcee
Q 012525 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTET 433 (461)
Q Consensus 354 v~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v 433 (461)
+.+.++.++ .+|+|+. +..++.+|.-+... +++|+||||||.+..+|.. ..+.+.++++.++|-.+++...
T Consensus 215 f~iSassLt-sK~~Ge~-eK~vralf~vAr~~----qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s 285 (428)
T KOG0740|consen 215 FNISASSLT-SKYVGES-EKLVRALFKVARSL----QPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNS 285 (428)
T ss_pred eeccHHHhh-hhccChH-HHHHHHHHHHHHhc----CCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccC
Confidence 999999999 5799999 99999999877654 8999999999999999832 3445555677777777774432
Q ss_pred eeecceeeecCCeEEEecCCCCc
Q 012525 434 KTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 434 ~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
. ...+.++|.|||..-
T Consensus 286 ~-------~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 286 A-------PDDRVLVIGATNRPW 301 (428)
T ss_pred C-------CCCeEEEEecCCCch
Confidence 2 112688999999764
No 56
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-13 Score=155.15 Aligned_cols=166 Identities=26% Similarity=0.357 Sum_probs=128.7
Q ss_pred CCCCCCCCCCCCCCCC----HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccc
Q 012525 248 GGSRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVEL 323 (461)
Q Consensus 248 ~~~~w~g~~l~~~l~t----~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~ 323 (461)
...+|+++++...... ...+++.|.+.|+||++|...|..+|.......... .
T Consensus 533 ~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-----------------------~ 589 (898)
T KOG1051|consen 533 VVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-----------------------N 589 (898)
T ss_pred hhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-----------------------C
Confidence 4689999888776543 345899999999999999999999995322111100 1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchh--------hhhcCcccccHHHHHHHHHHhhchhhhccCce
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATT--------LTQAGYVGEDVESILYKLLAQAEFNVEAAQQG 392 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~--------l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~g 392 (461)
...-+||.||.|+|||-||++||..+- -.|+.+++++ -...+|+|......|.+.+... ..+
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrrr-------P~s 662 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRR-------PYS 662 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcC-------Cce
Confidence 235689999999999999999999883 3789999986 2334788888777777776554 456
Q ss_pred EEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 393 VLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
||||||||+..+. +++.|+++||.+.+....+.....++.|||.|+|.+..
T Consensus 663 VVLfdeIEkAh~~--------------v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~ 713 (898)
T KOG1051|consen 663 VVLFEEIEKAHPD--------------VLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSS 713 (898)
T ss_pred EEEEechhhcCHH--------------HHHHHHHHHhcCccccCCCcEeeccceEEEEecccchH
Confidence 9999999999998 99999999998887765554444459999999998765
No 57
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.49 E-value=1.6e-14 Score=152.30 Aligned_cols=139 Identities=22% Similarity=0.374 Sum_probs=120.9
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhh----cCcccccHHHHHHH
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ----AGYVGEDVESILYK 377 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~----~g~vGe~~e~~L~~ 377 (461)
++.|+.|....+.++.++.+..+|||.|++||||..+||+|++.. ..|||.++|+.+-+ +..+|.. ...+..
T Consensus 226 IG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe-KGAFTG 304 (550)
T COG3604 226 IGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE-KGAFTG 304 (550)
T ss_pred eecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc-cccccc
Confidence 578899999999999999999999999999999999999999977 46999999987654 3344444 445556
Q ss_pred HHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 378 lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
.+....+.++.+++|.||||||..|... +|..||..|+++++......+.+..|..+|++||.|.+
T Consensus 305 A~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~ 370 (550)
T COG3604 305 AINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLE 370 (550)
T ss_pred chhccCcceeecCCCeEechhhccCCHH--------------HHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHH
Confidence 6667778899999999999999999999 99999999999999988888887789999999999976
Q ss_pred c
Q 012525 458 T 458 (461)
Q Consensus 458 ~ 458 (461)
+
T Consensus 371 ~ 371 (550)
T COG3604 371 E 371 (550)
T ss_pred H
Confidence 4
No 58
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.49 E-value=2.2e-13 Score=140.40 Aligned_cols=146 Identities=27% Similarity=0.401 Sum_probs=96.6
Q ss_pred hcCChHHHHHHHHHHHHHHHHH--HHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kr--i~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
.|.|++++++.|.+++...... ++. ..+ ...+.++||+||||||||++|+++|+.++.
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~---~~g-----------------~~~p~gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFE---EVG-----------------IEPPKGVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHH---hcC-----------------CCCCceEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3899999999999988532211 111 011 122467999999999999999999999999
Q ss_pred ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCc
Q 012525 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 352 pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~ 431 (461)
+|+.+....+.. .|.|+. ...++.+|..+.. ..++||||||||.+...+.....+.+......+..|+..|++.
T Consensus 183 ~~~~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 183 TFIRVVGSELVR-KYIGEG-ARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred CEEecchHHHHH-HhhhHH-HHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 999998887764 366665 5667777765543 2678999999999987754333222222122333444444432
Q ss_pred eeeeecceeeecCCeEEEecCCC
Q 012525 432 ETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 432 ~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
.. ..+.++|+|+|.
T Consensus 257 ~~---------~~~v~vI~ttn~ 270 (364)
T TIGR01242 257 DP---------RGNVKVIAATNR 270 (364)
T ss_pred CC---------CCCEEEEEecCC
Confidence 11 114677777774
No 59
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.47 E-value=8.1e-14 Score=147.58 Aligned_cols=140 Identities=19% Similarity=0.334 Sum_probs=114.9
Q ss_pred CCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhhhc----CcccccHHHHHH
Q 012525 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQA----GYVGEDVESILY 376 (461)
Q Consensus 304 g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~~~----g~vGe~~e~~L~ 376 (461)
-.+.|+.|..+.+.+.+++.+..+|||+|++||||.++||+|++... .||+.++|..+.+. .++|.. ...+.
T Consensus 143 liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhe-kGAFT 221 (464)
T COG2204 143 LVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHE-KGAFT 221 (464)
T ss_pred ceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccc-ccCcC
Confidence 35788999999999999999999999999999999999999998774 59999999987742 122222 11222
Q ss_pred HHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCc
Q 012525 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 377 ~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
.......+.++.+++|+||||||..|... +|..||++|+.+++......+....|..+|++||.++
T Consensus 222 GA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL 287 (464)
T COG2204 222 GAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDL 287 (464)
T ss_pred CcccccCcceeEcCCceEEeeccccCCHH--------------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCH
Confidence 22233456788899999999999999998 9999999999999988777777777999999999987
Q ss_pred Cc
Q 012525 457 KT 458 (461)
Q Consensus 457 e~ 458 (461)
+.
T Consensus 288 ~~ 289 (464)
T COG2204 288 EE 289 (464)
T ss_pred HH
Confidence 64
No 60
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.7e-13 Score=154.97 Aligned_cols=148 Identities=26% Similarity=0.408 Sum_probs=116.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~--~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraL 345 (461)
...|++ |.|++.++..|++.|... |..++..... .+++.|||+||||||||++|++|
T Consensus 261 ~v~fd~-vggl~~~i~~LKEmVl~PLlyPE~f~~~~i--------------------tpPrgvL~~GppGTGkTl~araL 319 (1080)
T KOG0732|consen 261 SVGFDS-VGGLENYINQLKEMVLLPLLYPEFFDNFNI--------------------TPPRGVLFHGPPGTGKTLMARAL 319 (1080)
T ss_pred ccCccc-cccHHHHHHHHHHHHHhHhhhhhHhhhccc--------------------CCCcceeecCCCCCchhHHHHhh
Confidence 345566 899999999999998754 4444432221 23578999999999999999999
Q ss_pred HHhcC-----CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHH
Q 012525 346 ARHVN-----VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 346 A~~l~-----~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
|..+. ..|+.-..++.. .+|+|+. +..++-+|.++... +++|||+||||-|++.|++...+.+.+ +
T Consensus 320 a~~~s~~~~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~S---I 390 (1080)
T KOG0732|consen 320 AAACSRGNRKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHAS---I 390 (1080)
T ss_pred hhhhcccccccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhcc----CceEEeccccccccccccchHHHhhhh---H
Confidence 99883 466666777777 4799998 99999999988765 899999999999999998776666666 9
Q ss_pred HHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 421 QQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 421 ~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
+.+||.+|+|...+- ..++|.++|.
T Consensus 391 vSTLLaLmdGldsRg---------qVvvigATnR 415 (1080)
T KOG0732|consen 391 VSTLLALMDGLDSRG---------QVVVIGATNR 415 (1080)
T ss_pred HHHHHHhccCCCCCC---------ceEEEcccCC
Confidence 999999999765321 4678888764
No 61
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.45 E-value=4.2e-13 Score=148.28 Aligned_cols=157 Identities=25% Similarity=0.348 Sum_probs=113.0
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHH
Q 012525 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 263 t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLA 342 (461)
++..+...+++ |.|.+.+++.|...+...... ......+ ...+.+|||+||||||||++|
T Consensus 143 ~~~~~~~~~~d-i~g~~~~~~~l~~i~~~~~~~--~~~~~~~-----------------~~~~~gill~G~~G~GKt~~~ 202 (644)
T PRK10733 143 TEDQIKTTFAD-VAGCDEAKEEVAELVEYLREP--SRFQKLG-----------------GKIPKGVLMVGPPGTGKTLLA 202 (644)
T ss_pred CchhhhCcHHH-HcCHHHHHHHHHHHHHHhhCH--HHHHhcC-----------------CCCCCcEEEECCCCCCHHHHH
Confidence 34556667777 799999999998877421100 0000000 122467999999999999999
Q ss_pred HHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHH
Q 012525 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (461)
Q Consensus 343 raLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~ 422 (461)
+++|++++.+|+.++++++.. .+++.. ...++.+|..+.. ..++||||||||.+...|.....+.+...+.+++
T Consensus 203 ~~~a~~~~~~f~~is~~~~~~-~~~g~~-~~~~~~~f~~a~~----~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln 276 (644)
T PRK10733 203 KAIAGEAKVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 276 (644)
T ss_pred HHHHHHcCCCEEEEehHHhHH-hhhccc-HHHHHHHHHHHHh----cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHH
Confidence 999999999999999998874 366766 5677888876643 3789999999999998776433334444566889
Q ss_pred HHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 423 ALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 423 aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
.||..||+... ....++|+|||.
T Consensus 277 ~lL~~mdg~~~---------~~~vivIaaTN~ 299 (644)
T PRK10733 277 QMLVEMDGFEG---------NEGIIVIAATNR 299 (644)
T ss_pred HHHHhhhcccC---------CCCeeEEEecCC
Confidence 99999986432 125788888885
No 62
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.45 E-value=1.7e-13 Score=135.53 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=80.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchh-hhhcCccccc----HHHHHHHHHH------------hhchhh-
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT-LTQAGYVGED----VESILYKLLA------------QAEFNV- 386 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~-l~~~g~vGe~----~e~~L~~lf~------------~a~~~v- 386 (461)
..+|||.||||||||++|++||+.++.+|+.+++.. +....++|.. ....+..... +..+.+
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 478999999999999999999999999999998763 2222222221 1111111100 001111
Q ss_pred -hccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeeccee-----eecCCeEEEecCCCCc
Q 012525 387 -EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVS-----KVSRDNLYIKTSGLDS 456 (461)
Q Consensus 387 -~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r-----~~~rd~IiI~TsNid~ 456 (461)
....+++||||||+++.++ +++.|+.+||++.+.++.... ....++.+|+|+|...
T Consensus 101 ~A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~ 162 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE 162 (262)
T ss_pred HHHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc
Confidence 1246679999999999888 999999999998887765421 1223789999999763
No 63
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.3e-13 Score=135.57 Aligned_cols=128 Identities=26% Similarity=0.373 Sum_probs=95.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|.|.-.....+.+.+..|...-+ .+.+.+ -..+..++||||||||||++|+++|..+++.|+
T Consensus 134 ~ggl~~qirelre~ielpl~np~-lf~rvg-----------------Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl 195 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPE-LFLRVG-----------------IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFL 195 (388)
T ss_pred hCChHHHHHHHHhheEeeccCch-hccccC-----------------CCCCceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence 67777777777777754432210 000001 123578999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
.+..+.+.+ +|.|+. .+.+++.|..+... .+||||+||||++...+.+...+. .+.+|.+|.++++
T Consensus 196 ~v~ss~lv~-kyiGEs-aRlIRemf~yA~~~----~pciifmdeiDAigGRr~se~Ts~---dreiqrTLMeLln 261 (388)
T KOG0651|consen 196 KVVSSALVD-KYIGES-ARLIRDMFRYAREV----IPCIIFMDEIDAIGGRRFSEGTSS---DREIQRTLMELLN 261 (388)
T ss_pred EeeHhhhhh-hhcccH-HHHHHHHHHHHhhh----CceEEeehhhhhhccEEeccccch---hHHHHHHHHHHHH
Confidence 999999994 699998 79999999988766 679999999999998874433333 3446777766665
No 64
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.44 E-value=8.1e-14 Score=148.37 Aligned_cols=139 Identities=19% Similarity=0.357 Sum_probs=111.9
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc----CcccccHHHHHHH
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYK 377 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~----g~vGe~~e~~L~~ 377 (461)
.+.++.|.......+.++.....|||.|++||||.++|++|++.. +.||+.++|+.+-+. .++|.. ...+..
T Consensus 248 ig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye-~GAFTG 326 (560)
T COG3829 248 IGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE-KGAFTG 326 (560)
T ss_pred ccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC-Cccccc
Confidence 466778888888888889999999999999999999999999876 569999999876643 222222 111111
Q ss_pred HHHh-hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCc
Q 012525 378 LLAQ-AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 378 lf~~-a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
.... ..+.++.|++|.||||||..|... +|..||++|++.++.........+.|..+|++||.++
T Consensus 327 A~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL 392 (560)
T COG3829 327 ASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNL 392 (560)
T ss_pred cccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCH
Confidence 1111 445678899999999999999998 9999999999999998888888888999999999987
Q ss_pred Cc
Q 012525 457 KT 458 (461)
Q Consensus 457 e~ 458 (461)
+.
T Consensus 393 ~~ 394 (560)
T COG3829 393 EK 394 (560)
T ss_pred HH
Confidence 54
No 65
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.43 E-value=5.2e-13 Score=136.93 Aligned_cols=141 Identities=21% Similarity=0.316 Sum_probs=93.0
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|.. |+||+++|+.|..++.. ....|+||+|+||||||++|++||+.+.
T Consensus 7 f~~-i~Gq~~~~~~l~~~~~~-------------------------------~~~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 7 FSA-IVGQEEMKQAMVLTAID-------------------------------PGIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred HHH-hCCHHHHHHHHHHHHhc-------------------------------cCCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 344 89999999988765520 1126899999999999999999999883
Q ss_pred -------Cc--eEEecch-hh----------------------hhcCcccc-cHHHHH-HHHHHhhchhhhccCceEEEE
Q 012525 351 -------VP--FVIADAT-TL----------------------TQAGYVGE-DVESIL-YKLLAQAEFNVEAAQQGMVYI 396 (461)
Q Consensus 351 -------~p--fv~i~~s-~l----------------------~~~g~vGe-~~e~~L-~~lf~~a~~~v~~a~~gVLfI 396 (461)
.+ +..+.+. ++ .....+|. +++..+ ...+....+.+..+++++|||
T Consensus 55 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~l 134 (334)
T PRK13407 55 LIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYI 134 (334)
T ss_pred CcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEe
Confidence 21 1111110 00 00012221 111111 112223345556678899999
Q ss_pred cCccccchhhhccccccccchHHHHHHHHHHHhCceeeee--cceeeecCCeEEEecCCCCcC
Q 012525 397 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTF--AAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 397 DEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~--~~~r~~~rd~IiI~TsNid~e 457 (461)
|||+.+.++ +|+.|++.|+.+++.+. ......+.++++|+|.|....
T Consensus 135 DEInrl~~~--------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~ 183 (334)
T PRK13407 135 DEVNLLEDH--------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG 183 (334)
T ss_pred cChHhCCHH--------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC
Confidence 999999988 99999999998775443 335566679999999998644
No 66
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.5e-13 Score=144.86 Aligned_cols=156 Identities=26% Similarity=0.309 Sum_probs=115.4
Q ss_pred CCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchH
Q 012525 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKT 339 (461)
Q Consensus 260 ~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKT 339 (461)
+....++..+.||+.-+|++++|+++.+.+.-... . .. ..+.-++|.||||+|||
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l--~--~~---------------------~kGpILcLVGPPGVGKT 364 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKL--T--KK---------------------LKGPILCLVGPPGVGKT 364 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHH--h--cc---------------------CCCcEEEEECCCCCCch
Confidence 44566788999999999999999999998741111 0 01 11245789999999999
Q ss_pred HHHHHHHHhcCCceEEecchhhhhc--------CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccc
Q 012525 340 LLAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (461)
Q Consensus 340 tLAraLA~~l~~pfv~i~~s~l~~~--------g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~ 411 (461)
+|++.||+.++..|++++..-+.+. .|+|....++++.+-.... .+.|++|||||+|..+-.
T Consensus 365 SLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~------~NPv~LLDEIDKm~ss~r---- 434 (782)
T COG0466 365 SLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDKMGSSFR---- 434 (782)
T ss_pred hHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCC------cCCeEEeechhhccCCCC----
Confidence 9999999999999999988655532 5788887777777664333 456999999999998732
Q ss_pred ccccchHHHHHHHHHHHhCceeeeecc-eeeecC---CeEEEecCCCCc
Q 012525 412 SRDVSGEGVQQALLKMLEGTETKTFAA-VSKVSR---DNLYIKTSGLDS 456 (461)
Q Consensus 412 ~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r~~~r---d~IiI~TsNid~ 456 (461)
.+ -.++||+.||-.+.+.+.+ ....+. +.+||+|+|.-.
T Consensus 435 -GD-----PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 435 -GD-----PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred -CC-----hHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 22 5689999999666655554 222232 799999999644
No 67
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.42 E-value=1e-12 Score=148.09 Aligned_cols=154 Identities=25% Similarity=0.316 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHH
Q 012525 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (461)
Q Consensus 261 l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTt 340 (461)
......+.+.|++.++|++++|+.|.+.+.....+ + ...+.++||+||||||||+
T Consensus 308 ~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~--------~-----------------~~~~~~lll~GppG~GKT~ 362 (775)
T TIGR00763 308 NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR--------G-----------------KMKGPILCLVGPPGVGKTS 362 (775)
T ss_pred hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh--------c-----------------CCCCceEEEECCCCCCHHH
Confidence 33567788999999999999999998876422110 0 0112479999999999999
Q ss_pred HHHHHHHhcCCceEEecchhhhh--------cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc
Q 012525 341 LAKTLARHVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 341 LAraLA~~l~~pfv~i~~s~l~~--------~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
+|++||+.++.+|+.+++..+.. ..|+|... ..+...+..+.. ...||||||||++.....
T Consensus 363 lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~-g~i~~~l~~~~~-----~~~villDEidk~~~~~~----- 431 (775)
T TIGR00763 363 LGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMP-GRIIQGLKKAKT-----KNPLFLLDEIDKIGSSFR----- 431 (775)
T ss_pred HHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCC-chHHHHHHHhCc-----CCCEEEEechhhcCCccC-----
Confidence 99999999999999987654321 24555553 333344443321 345999999999986421
Q ss_pred cccchHHHHHHHHHHHhCceeeeecc---eeeec-CCeEEEecCCCC
Q 012525 413 RDVSGEGVQQALLKMLEGTETKTFAA---VSKVS-RDNLYIKTSGLD 455 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg~~v~i~~~---~r~~~-rd~IiI~TsNid 455 (461)
.+ ..++||++||..+...+.. ..... .+.++|+|+|.-
T Consensus 432 ~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 432 GD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI 473 (775)
T ss_pred CC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc
Confidence 11 4689999998532221111 11222 268899999963
No 68
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.41 E-value=1.1e-12 Score=135.32 Aligned_cols=138 Identities=21% Similarity=0.320 Sum_probs=92.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC----
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~---- 350 (461)
|+||+++|..|...+.+ ....+|||.|++|||||++||++++.+.
T Consensus 19 ivGq~~~k~al~~~~~~-------------------------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~ 67 (350)
T CHL00081 19 IVGQEEMKLALILNVID-------------------------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEV 67 (350)
T ss_pred HhChHHHHHHHHHhccC-------------------------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCc
Confidence 89999999999887731 1126799999999999999999988763
Q ss_pred ---CceEEecch-------hh--------------------------hhcCccc-ccHHHHHHHHH-HhhchhhhccCce
Q 012525 351 ---VPFVIADAT-------TL--------------------------TQAGYVG-EDVESILYKLL-AQAEFNVEAAQQG 392 (461)
Q Consensus 351 ---~pfv~i~~s-------~l--------------------------~~~g~vG-e~~e~~L~~lf-~~a~~~v~~a~~g 392 (461)
.||. .+.. .+ ....++| -+.+..+..-. ....+.+..++++
T Consensus 68 ~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~G 146 (350)
T CHL00081 68 VKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRG 146 (350)
T ss_pred cCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCC
Confidence 2332 0000 00 0000111 12222221111 1124456678899
Q ss_pred EEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeee--cceeeecCCeEEEecCCCCcCc
Q 012525 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTF--AAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 393 VLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~--~~~r~~~rd~IiI~TsNid~e~ 458 (461)
|||||||+.+.++ +|+.|++.|+.+++.+. ......+.++++|+|.|+....
T Consensus 147 iL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~ 200 (350)
T CHL00081 147 ILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGE 200 (350)
T ss_pred EEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCC
Confidence 9999999999999 99999999997655543 3355666799999999987543
No 69
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.41 E-value=1.3e-12 Score=146.23 Aligned_cols=146 Identities=28% Similarity=0.448 Sum_probs=105.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+++ |+|++++++.|.+.+..... .++. ..+ ...+.+|||+||||||||+||++||+
T Consensus 176 ~~~d-i~G~~~~~~~l~~~i~~~~~~~~~~~---~~g-----------------i~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 176 TYED-IGGLKEAKEKIREMVELPMKHPELFE---HLG-----------------IEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CHHH-hcCHHHHHHHHHHHHHHHhhCHHHHH---hcC-----------------CCCCceEEEECCCCCChHHHHHHHHH
Confidence 4555 89999999999998853221 1111 111 12347899999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+++.+|+.+++.++.. .+.|+. +..++.+|..+... .++||||||||.+..+++... ......+++.|+.+
T Consensus 235 ~~~~~~i~i~~~~i~~-~~~g~~-~~~l~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ 305 (733)
T TIGR01243 235 EAGAYFISINGPEIMS-KYYGES-EERLREIFKEAEEN----APSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTL 305 (733)
T ss_pred HhCCeEEEEecHHHhc-ccccHH-HHHHHHHHHHHHhc----CCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHH
Confidence 9999999999998874 577766 67788888776533 678999999999998764321 12234588999999
Q ss_pred HhCceeeeecceeeecCCeEEEecCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
|++.... ...++|+++|.
T Consensus 306 ld~l~~~---------~~vivI~atn~ 323 (733)
T TIGR01243 306 MDGLKGR---------GRVIVIGATNR 323 (733)
T ss_pred hhccccC---------CCEEEEeecCC
Confidence 9854211 14577777774
No 70
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.40 E-value=1.2e-12 Score=139.32 Aligned_cols=139 Identities=20% Similarity=0.225 Sum_probs=96.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHH
Q 012525 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (461)
Q Consensus 265 ~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAra 344 (461)
..+...|.+.|+|++++++.+..++ ....||||+||||||||++|++
T Consensus 12 ~~l~~~l~~~i~gre~vI~lll~aa---------------------------------lag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAA---------------------------------LSGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHH---------------------------------ccCCCEEEECCCChhHHHHHHH
Confidence 4578889999999999999888877 2358899999999999999999
Q ss_pred HHHhcCC--ceEEecchhhhhcCcccccHHHHH--HHHHH-hhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 345 LARHVNV--PFVIADATTLTQAGYVGEDVESIL--YKLLA-QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 345 LA~~l~~--pfv~i~~s~l~~~g~vGe~~e~~L--~~lf~-~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
||+.+.. +|....+...+....+|...-... ...|. ...+.+..++ |||+|||+++.++
T Consensus 59 La~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~-------------- 122 (498)
T PRK13531 59 LKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPA-------------- 122 (498)
T ss_pred HHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHH--------------
Confidence 9997743 455444432122223332100110 11121 1112221222 9999999999998
Q ss_pred HHHHHHHHHhCceeeeecceeeecCCeEEEecCC
Q 012525 420 VQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSG 453 (461)
Q Consensus 420 v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsN 453 (461)
+|++||..|+++.+++.......+.++++++| |
T Consensus 123 ~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N 155 (498)
T PRK13531 123 ILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-N 155 (498)
T ss_pred HHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-C
Confidence 99999999999998876557777777777777 5
No 71
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=8.2e-13 Score=139.85 Aligned_cols=116 Identities=32% Similarity=0.484 Sum_probs=89.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC-ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhc----cCceEEEEcCcc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV-PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA----AQQGMVYIDEVD 400 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~-pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~----a~~gVLfIDEID 400 (461)
++||||||||||||++||.|.+.++. +=-.++..++. .+|+|++ |..++++|..++..... ..=.||+|||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 57999999999999999999999976 23457778887 4699999 89999999987755433 222599999999
Q ss_pred ccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCC
Q 012525 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSG 453 (461)
Q Consensus 401 ~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsN 453 (461)
+++..|.+...+..+. +.++|+||.-|||.+.. .+.++|.-||
T Consensus 335 AICKqRGS~~g~TGVh-D~VVNQLLsKmDGVeqL---------NNILVIGMTN 377 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVH-DTVVNQLLSKMDGVEQL---------NNILVIGMTN 377 (744)
T ss_pred HHHHhcCCCCCCCCcc-HHHHHHHHHhcccHHhh---------hcEEEEeccC
Confidence 9999998766555543 55999999999976432 1356666665
No 72
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.36 E-value=1.5e-12 Score=133.10 Aligned_cols=130 Identities=21% Similarity=0.305 Sum_probs=93.3
Q ss_pred chhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhhhcCcccccHHHHHHH----HHH-
Q 012525 309 PKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYK----LLA- 380 (461)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~~~g~vGe~~e~~L~~----lf~- 380 (461)
+.|..+.+.+..++....+|||+|++||||+++|++|+.... .||+.++|..+.+. ..+..+.. .|.
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~-----~l~~~lfG~~~g~~~g 80 (329)
T TIGR02974 6 NAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN-----LLDSELFGHEAGAFTG 80 (329)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH-----HHHHHHhccccccccC
Confidence 334444444444555678899999999999999999998664 69999999876531 11111110 111
Q ss_pred ---hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 381 ---QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 381 ---~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
...+.++.+++++||||||+.|... +|..|+.+|+...+...........++.+|+++|.+.+
T Consensus 81 a~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~ 146 (329)
T TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLP 146 (329)
T ss_pred cccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHH
Confidence 1233466778999999999999998 99999999998776655555555568999999998753
No 73
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.35 E-value=3.6e-12 Score=140.74 Aligned_cols=138 Identities=25% Similarity=0.289 Sum_probs=97.5
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc----
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---- 349 (461)
.|+||+.+|..|..++.+ ....+|||.|++|||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~-------------------------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~ 53 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVD-------------------------------PRIGGVLIRGEKGTAKSTAARGLAALLPPID 53 (633)
T ss_pred hhcChHHHHHHHHHHhhC-------------------------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCce
Confidence 389999999888766621 112569999999999999999999988
Q ss_pred -------------------------------CCceEEecchhhhhcCcccc-cHHHHHHH-HHHhhchhhhccCceEEEE
Q 012525 350 -------------------------------NVPFVIADATTLTQAGYVGE-DVESILYK-LLAQAEFNVEAAQQGMVYI 396 (461)
Q Consensus 350 -------------------------------~~pfv~i~~s~l~~~g~vGe-~~e~~L~~-lf~~a~~~v~~a~~gVLfI 396 (461)
..||+.+.+..... .++|. +++..+.. .+....+.+..++++||||
T Consensus 54 ~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~-~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~l 132 (633)
T TIGR02442 54 VVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATED-RVVGSLDIERALREGEKAFQPGLLAEAHRGILYI 132 (633)
T ss_pred eccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHH-HcCCcccHHHHhhcCCeeecCcceeecCCCeEEe
Confidence 24677666554332 23332 33322221 1112345566778999999
Q ss_pred cCccccchhhhccccccccchHHHHHHHHHHHhCceeeee--cceeeecCCeEEEecCCCCcC
Q 012525 397 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTF--AAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 397 DEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~--~~~r~~~rd~IiI~TsNid~e 457 (461)
|||++|... +|+.|++.|+.+.+.+. ......+.++++|+|+|.+..
T Consensus 133 DEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg 181 (633)
T TIGR02442 133 DEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG 181 (633)
T ss_pred ChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC
Confidence 999999998 99999999997754433 335566678999999997643
No 74
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2e-12 Score=130.56 Aligned_cols=119 Identities=27% Similarity=0.383 Sum_probs=90.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC---------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCc-eEEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV---------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQ-GMVY 395 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~---------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~-gVLf 395 (461)
+-|||+||||||||+|+|+||+.+.. .++++++..+. ++|+++. .+.+.++|......++..+. -.++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56899999999999999999998843 57899999988 4699998 78889999877665544222 2457
Q ss_pred EcCccccchhhhccccc-cccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 396 IDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 396 IDEID~L~~~R~~~~~~-~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
|||++.|...|...... .....-+++|+||..||.-+.. .++++++|+|+.
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~---------~NvliL~TSNl~ 307 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY---------PNVLILATSNLT 307 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC---------CCEEEEeccchH
Confidence 99999999998544433 3334457999999999933211 168888999975
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.34 E-value=2.7e-12 Score=151.17 Aligned_cols=113 Identities=16% Similarity=0.250 Sum_probs=82.4
Q ss_pred cccCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCc----------cc-----------------------
Q 012525 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGY----------VG----------------------- 368 (461)
Q Consensus 322 ~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~----------vG----------------------- 368 (461)
...+++|||+||||||||+|||+||.++++||+.++++++... + +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~-~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDN-KPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc-ccccccccccccccccccccccccccccchhhhhhc
Confidence 3557899999999999999999999999999999999988743 2 11
Q ss_pred --------ccH-HHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecce
Q 012525 369 --------EDV-ESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAV 439 (461)
Q Consensus 369 --------e~~-e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~ 439 (461)
..+ ...++.+|+.|... .||||||||||.+..+.+ ....++.|+..|++....
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~----SPCIIFIDEIDaL~~~ds---------~~ltL~qLLneLDg~~~~----- 1767 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAM----SPCIIWIPNIHDLNVNES---------NYLSLGLLVNSLSRDCER----- 1767 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHC----CCeEEEEEchhhcCCCcc---------ceehHHHHHHHhcccccc-----
Confidence 110 11256677766543 899999999999987621 112478999999864211
Q ss_pred eeecCCeEEEecCCC
Q 012525 440 SKVSRDNLYIKTSGL 454 (461)
Q Consensus 440 r~~~rd~IiI~TsNi 454 (461)
...+..|+|+|||.
T Consensus 1768 -~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1768 -CSTRNILVIASTHI 1781 (2281)
T ss_pred -CCCCCEEEEEeCCC
Confidence 11236789999983
No 76
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.33 E-value=3.2e-13 Score=119.70 Aligned_cols=114 Identities=24% Similarity=0.339 Sum_probs=75.2
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhc-CcccccHHHHHHHHHHhhchhhh--ccCceEEEEcCccccc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVE--AAQQGMVYIDEVDKIT 403 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~-g~vGe~~e~~L~~lf~~a~~~v~--~a~~gVLfIDEID~L~ 403 (461)
+|||+||||||||+||+.+|+.++.+++.+.++...+. .+.|.-... ...+......+. ..++.|+|||||+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 58999999999999999999999999999888764432 111111000 011111111111 1367899999999988
Q ss_pred hhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecC--------CeEEEecCCCCc
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSR--------DNLYIKTSGLDS 456 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~r--------d~IiI~TsNid~ 456 (461)
+. +++.|+.+||+..+.+......... ++++|+|+|...
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 87 9999999999888776655322222 299999999775
No 77
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.31 E-value=1.5e-12 Score=135.93 Aligned_cols=137 Identities=20% Similarity=0.311 Sum_probs=101.5
Q ss_pred CCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc----CCceEEecchhhhhcC----cccccHHHHHHH
Q 012525 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLTQAG----YVGEDVESILYK 377 (461)
Q Consensus 306 ~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~s~l~~~g----~vGe~~e~~L~~ 377 (461)
+.+..+.+..+.+..++....+||++|++||||+++|++|+... ..||+.++|..+.++. ++|.. +..+..
T Consensus 82 G~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~-kGaftG 160 (403)
T COG1221 82 GESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHE-KGAFTG 160 (403)
T ss_pred ccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccc-cceeec
Confidence 33444444444444556667899999999999999999998533 5699999999988641 11111 111222
Q ss_pred HHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 378 lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
......+.++.+.+|+||||||..|... .|..|+.+||.+.++........+.++.+|++||.+..
T Consensus 161 a~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~ 226 (403)
T COG1221 161 AQGGKAGLFEQANGGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLE 226 (403)
T ss_pred ccCCcCchheecCCCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHH
Confidence 2233445678899999999999999999 99999999999988877666666669999999998754
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=9.4e-12 Score=136.31 Aligned_cols=109 Identities=28% Similarity=0.418 Sum_probs=76.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ ||||+.+++.|..++... ...+.+||+||+|||||++|+.||+.
T Consensus 13 qtFdd-VIGQe~vv~~L~~al~~g------------------------------RLpHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 13 RDFTT-LVGQEHVVRALTHALEQQ------------------------------RLHHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred CcHHH-HcCcHHHHHHHHHHHHhC------------------------------CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45666 899999999998888411 01244799999999999999999998
Q ss_pred cCC-----------------------------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCc
Q 012525 349 VNV-----------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (461)
Q Consensus 349 l~~-----------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEI 399 (461)
+++ .+++++...- .. .+.++++...........+..|+||||+
T Consensus 62 LnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~-------~g-VDdIReLie~~~~~P~~gr~KViIIDEa 133 (700)
T PRK12323 62 LNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASN-------RG-VDEMAQLLDKAVYAPTAGRFKVYMIDEV 133 (700)
T ss_pred hcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccccc-------CC-HHHHHHHHHHHHhchhcCCceEEEEECh
Confidence 876 1222222110 11 2345555554444333456779999999
Q ss_pred cccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 400 D~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
|+|+.. .+|+||+.||+
T Consensus 134 h~Ls~~--------------AaNALLKTLEE 150 (700)
T PRK12323 134 HMLTNH--------------AFNAMLKTLEE 150 (700)
T ss_pred HhcCHH--------------HHHHHHHhhcc
Confidence 999987 89999999995
No 79
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.30 E-value=6.5e-12 Score=129.04 Aligned_cols=139 Identities=22% Similarity=0.326 Sum_probs=91.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-----
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l----- 349 (461)
|+||+.+|..|..++.. ....+|||.|++|+|||||+++|+..+
T Consensus 6 ivgq~~~~~al~~~~~~-------------------------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~ 54 (337)
T TIGR02030 6 IVGQDEMKLALLLNVID-------------------------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKA 54 (337)
T ss_pred cccHHHHHHHHHHHhcC-------------------------------CCCCeEEEEcCCCCCHHHHHHHHHHhhccccc
Confidence 89999999988776631 123689999999999999999999877
Q ss_pred --CCceE---------Eecchhh-----------------------hhcCcccc-cHHHHHH-HHHHhhchhhhccCceE
Q 012525 350 --NVPFV---------IADATTL-----------------------TQAGYVGE-DVESILY-KLLAQAEFNVEAAQQGM 393 (461)
Q Consensus 350 --~~pfv---------~i~~s~l-----------------------~~~g~vGe-~~e~~L~-~lf~~a~~~v~~a~~gV 393 (461)
+.+|- ..+|... ....++|. +.+..+. ..+....+.+..+++++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~Gv 134 (337)
T TIGR02030 55 VAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGI 134 (337)
T ss_pred ccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCE
Confidence 22221 0011100 00012222 1111111 11222344566678899
Q ss_pred EEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeee--ecceeeecCCeEEEecCCCCcCc
Q 012525 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKT--FAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 394 LfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i--~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
||||||+.|.++ +|+.|++.|+.+++.+ .......+.++++|+|.|.....
T Consensus 135 L~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~ 187 (337)
T TIGR02030 135 LYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGE 187 (337)
T ss_pred EEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCC
Confidence 999999999988 9999999999765433 23355556689999999987543
No 80
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.30 E-value=7.7e-12 Score=125.65 Aligned_cols=119 Identities=28% Similarity=0.286 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHH
Q 012525 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (461)
Q Consensus 261 l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTt 340 (461)
.++++...+.+++ ++||+.++.+|..++.. ....|+|||||||||||+
T Consensus 25 swteKYrPkt~de-~~gQe~vV~~L~~a~~~-------------------------------~~lp~~LFyGPpGTGKTS 72 (346)
T KOG0989|consen 25 SWTEKYRPKTFDE-LAGQEHVVQVLKNALLR-------------------------------RILPHYLFYGPPGTGKTS 72 (346)
T ss_pred chHHHhCCCcHHh-hcchHHHHHHHHHHHhh-------------------------------cCCceEEeeCCCCCcHhH
Confidence 3466667778888 79999999999998841 113789999999999999
Q ss_pred HHHHHHHhcCCc------eEEecchhhhhcCcccccHHHHHHHHHHhhchh------hhccCceEEEEcCccccchhhhc
Q 012525 341 LAKTLARHVNVP------FVIADATTLTQAGYVGEDVESILYKLLAQAEFN------VEAAQQGMVYIDEVDKITKKAES 408 (461)
Q Consensus 341 LAraLA~~l~~p------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~------v~~a~~gVLfIDEID~L~~~R~~ 408 (461)
.|+++|++++.+ +.+.++++... -.+...-.+-|+..... ......-||+|||.|.|+.+
T Consensus 73 talafar~L~~~~~~~~rvl~lnaSderG-----isvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--- 144 (346)
T KOG0989|consen 73 TALAFARALNCEQLFPCRVLELNASDERG-----ISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--- 144 (346)
T ss_pred HHHHHHHHhcCccccccchhhhccccccc-----ccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHH---
Confidence 999999999762 23334444332 22211111222221111 11223369999999999998
Q ss_pred cccccccchHHHHHHHHHHHhC
Q 012525 409 LNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 409 ~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+++|++.||.
T Consensus 145 -----------aq~aLrr~mE~ 155 (346)
T KOG0989|consen 145 -----------AQAALRRTMED 155 (346)
T ss_pred -----------HHHHHHHHHhc
Confidence 99999999995
No 81
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.30 E-value=4.9e-12 Score=137.04 Aligned_cols=134 Identities=24% Similarity=0.347 Sum_probs=104.4
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh-----------cCCceEEecchhhhhcCcccccHHH
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH-----------VNVPFVIADATTLTQAGYVGEDVES 373 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~-----------l~~pfv~i~~s~l~~~g~vGe~~e~ 373 (461)
.+.+..|..+.+.+..++....+|||+|++||||+++|++|++. .+.||+.++|..+.+. ..+.
T Consensus 222 iG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~-----lles 296 (538)
T PRK15424 222 LGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES-----LLEA 296 (538)
T ss_pred eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh-----hHHH
Confidence 45677888888888888889999999999999999999999987 3569999999987642 1122
Q ss_pred HHHH----HHH-----hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecC
Q 012525 374 ILYK----LLA-----QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSR 444 (461)
Q Consensus 374 ~L~~----lf~-----~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~r 444 (461)
.+.. .|. ...+.++.+++|+||||||+.|... +|..|+.+|+...+......+..+.
T Consensus 297 eLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e~~~~r~G~~~~~~~ 362 (538)
T PRK15424 297 ELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP--------------LQTRLLRVLEEKEVTRVGGHQPVPV 362 (538)
T ss_pred HhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHH--------------HHHHHHhhhhcCeEEecCCCceecc
Confidence 2111 111 1124566788999999999999999 9999999999888776555555566
Q ss_pred CeEEEecCCCCcC
Q 012525 445 DNLYIKTSGLDSK 457 (461)
Q Consensus 445 d~IiI~TsNid~e 457 (461)
++.+|+++|.+++
T Consensus 363 dvRiIaat~~~L~ 375 (538)
T PRK15424 363 DVRVISATHCDLE 375 (538)
T ss_pred ceEEEEecCCCHH
Confidence 8899999998864
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.4e-11 Score=131.39 Aligned_cols=110 Identities=29% Similarity=0.335 Sum_probs=75.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|++ |+||+.+++.|..++... ..++.+||+||+|||||++|+.||+
T Consensus 14 P~~f~d-vVGQe~iv~~L~~~i~~~------------------------------ri~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 14 PQFFRD-VIHQDLAIGALQNALKSG------------------------------KIGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred CCCHHH-HhChHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345666 899999999988887310 0123489999999999999999999
Q ss_pred hcCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 348 HVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 348 ~l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
.+++. |+++++..- .| ...++.+...........+..|+||||+|+|.
T Consensus 63 ~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~-----~g---Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls 134 (484)
T PRK14956 63 RLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASN-----RG---IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT 134 (484)
T ss_pred hcCcccccCccccCCCcHHHHHHccCCccceeechhhc-----cc---HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC
Confidence 98752 222222110 01 22344444433332223456799999999999
Q ss_pred hhhhccccccccchHHHHHHHHHHHhC
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.. .+++||+.||+
T Consensus 135 ~~--------------A~NALLKtLEE 147 (484)
T PRK14956 135 DQ--------------SFNALLKTLEE 147 (484)
T ss_pred HH--------------HHHHHHHHhhc
Confidence 87 89999999995
No 83
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.29 E-value=3.7e-11 Score=135.50 Aligned_cols=163 Identities=20% Similarity=0.316 Sum_probs=108.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEE
Q 012525 250 SRWGGSNLGEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVL 329 (461)
Q Consensus 250 ~~w~g~~l~~~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VL 329 (461)
=.|... ..+.....+..+.|++..+|++++|++|.+.+...... .. .....++
T Consensus 301 ~pw~~~--~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~----~~---------------------~~g~~i~ 353 (784)
T PRK10787 301 VPWNAR--SKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV----NK---------------------IKGPILC 353 (784)
T ss_pred CCCCCC--CcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc----cc---------------------CCCceEE
Confidence 345443 23344677899999999999999999998877422110 00 1135699
Q ss_pred EEccCCCchHHHHHHHHHhcCCceEEecchhhhhc--------CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 330 L~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~--------g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
|+||||||||++++.+|+.++.+|++++...+.+. .|.|......++ .+..+. ....||||||||+
T Consensus 354 l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~-~l~~~~-----~~~~villDEidk 427 (784)
T PRK10787 354 LVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQ-KMAKVG-----VKNPLFLLDEIDK 427 (784)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHH-HHHhcC-----CCCCEEEEEChhh
Confidence 99999999999999999999999998887654321 244444222222 222211 1345999999999
Q ss_pred cchhhhccccccccchHHHHHHHHHHHhCceeeeecc-ee--eecC-CeEEEecCCCC
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA-VS--KVSR-DNLYIKTSGLD 455 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r--~~~r-d~IiI~TsNid 455 (461)
+..... .+ .+++|+++||..+...+.+ .. ..+. +.++|+|+|.-
T Consensus 428 ~~~~~~-----g~-----~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~ 475 (784)
T PRK10787 428 MSSDMR-----GD-----PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM 475 (784)
T ss_pred cccccC-----CC-----HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC
Confidence 987621 11 5789999999654433333 11 1222 78999999964
No 84
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.29 E-value=3.8e-12 Score=129.94 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=83.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchh-hhhcCcccccHHHHHH---HHHHhhchhh--hccCceEEEEcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT-LTQAGYVGEDVESILY---KLLAQAEFNV--EAAQQGMVYIDE 398 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~-l~~~g~vGe~~e~~L~---~lf~~a~~~v--~~a~~gVLfIDE 398 (461)
.++|||.|+||||||++|+.||+.++.+++.+++.. +...+++|...-. ++ ..+....+.+ ....+.+||+||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~-l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIV-LKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceee-ccCCcceeEEecCcchhHHhCCeEEEech
Confidence 368999999999999999999999999999999874 3333466653210 00 0111111111 123677899999
Q ss_pred ccccchhhhccccccccchHHHHHHHHHHHh-Cceeeeecceeee-cC-CeEEEecCCC
Q 012525 399 VDKITKKAESLNISRDVSGEGVQQALLKMLE-GTETKTFAAVSKV-SR-DNLYIKTSGL 454 (461)
Q Consensus 399 ID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE-g~~v~i~~~~r~~-~r-d~IiI~TsNi 454 (461)
||++.++ +++.|..+|| ++++.+....+.. +. ++.+|+|.|.
T Consensus 143 in~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 143 YDAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred hhccCHH--------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 9999888 8999999999 6677776654444 44 7999999996
No 85
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.29 E-value=1.7e-11 Score=122.41 Aligned_cols=131 Identities=24% Similarity=0.356 Sum_probs=85.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ ++||+++++.|...+...... .....+++|+||||||||+||+++|+++
T Consensus 2 ~~~~-~iG~~~~~~~l~~~l~~~~~~--------------------------~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 2 LLAE-FIGQEKVKEQLQLFIEAAKMR--------------------------QEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CHHH-HcCHHHHHHHHHHHHHHHHhc--------------------------CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3556 799999999988877311100 0113679999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.++..+....+... ..+...+... ..+.|||||||+.+... .++.|+.+|+
T Consensus 55 ~~~~~~~~~~~~~~~--------~~l~~~l~~~------~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~ 106 (305)
T TIGR00635 55 GVNLKITSGPALEKP--------GDLAAILTNL------EEGDVLFIDEIHRLSPA--------------VEELLYPAME 106 (305)
T ss_pred CCCEEEeccchhcCc--------hhHHHHHHhc------ccCCEEEEehHhhhCHH--------------HHHHhhHHHh
Confidence 988776665443321 1122222111 24579999999999877 6788899998
Q ss_pred Cceeeeeccee------eecC-CeEEEecCCCC
Q 012525 430 GTETKTFAAVS------KVSR-DNLYIKTSGLD 455 (461)
Q Consensus 430 g~~v~i~~~~r------~~~r-d~IiI~TsNid 455 (461)
.....+..... .... .+++|.++|..
T Consensus 107 ~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 107 DFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred hhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 76654432211 1111 36677666543
No 86
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.28 E-value=7.3e-12 Score=127.82 Aligned_cols=115 Identities=22% Similarity=0.327 Sum_probs=85.4
Q ss_pred ccccCCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhhhcCcccccHHHHHHHHHH-----------hhchhh
Q 012525 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLA-----------QAEFNV 386 (461)
Q Consensus 321 ~~~~~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~-----------~a~~~v 386 (461)
++....+|||+|++||||+++|++|+.... .||+.++|..+.+. ..-..+|. ...+.+
T Consensus 25 ~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~--------~~~~~lfg~~~~~~~g~~~~~~g~l 96 (326)
T PRK11608 25 LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN--------LLDSELFGHEAGAFTGAQKRHPGRF 96 (326)
T ss_pred HhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH--------HHHHHHccccccccCCcccccCCch
Confidence 344567899999999999999999997663 59999999986531 11111221 112345
Q ss_pred hccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 387 EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 387 ~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
..+.+|+||||||+.|... +|..|+.+|+...+...........++.+|+|++.+.+
T Consensus 97 ~~a~gGtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~ 153 (326)
T PRK11608 97 ERADGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153 (326)
T ss_pred hccCCCeEEeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHH
Confidence 6678999999999999998 99999999998776544444444457899999988753
No 87
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.4e-12 Score=134.52 Aligned_cols=139 Identities=22% Similarity=0.298 Sum_probs=93.0
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|.+ |+||+.||+.|..+. ...+|+||+||||||||+||+.+...+-
T Consensus 178 ~~D-V~GQ~~AKrAleiAA---------------------------------AGgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 178 FKD-VKGQEQAKRALEIAA---------------------------------AGGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred hhh-hcCcHHHHHHHHHHH---------------------------------hcCCcEEEecCCCCchHHhhhhhcccCC
Confidence 444 999999999998877 2358999999999999999999976551
Q ss_pred C----ceEEec------chhhh------hcCcccccHHHHHHHHHH----hhchhhhccCceEEEEcCccccchhhhccc
Q 012525 351 V----PFVIAD------ATTLT------QAGYVGEDVESILYKLLA----QAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (461)
Q Consensus 351 ~----pfv~i~------~s~l~------~~g~vGe~~e~~L~~lf~----~a~~~v~~a~~gVLfIDEID~L~~~R~~~~ 410 (461)
- .++++. ..... ..-+.....+..+..++. ...+.+..+++|||||||+-.+..+
T Consensus 224 pls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~----- 298 (490)
T COG0606 224 PLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS----- 298 (490)
T ss_pred CCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH-----
Confidence 1 000000 00000 000111111111222221 2345567789999999999887776
Q ss_pred cccccchHHHHHHHHHHHhCceeeeecc--eeeecCCeEEEecCCCCcC
Q 012525 411 ISRDVSGEGVQQALLKMLEGTETKTFAA--VSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 411 ~~~~~s~~~v~~aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsNid~e 457 (461)
+++.|.+.||.+++.+-.. .-.++.+|++|+++|+.+-
T Consensus 299 ---------iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpc 338 (490)
T COG0606 299 ---------ILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPC 338 (490)
T ss_pred ---------HHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCc
Confidence 9999999999888777665 3344559999999998864
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1.8e-11 Score=135.74 Aligned_cols=111 Identities=29% Similarity=0.366 Sum_probs=76.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHH
Q 012525 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 267 l~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
-.+.|++ |+||+.+++.|...+... ...+.+||+||+|||||++|++||
T Consensus 11 RPqtFdE-VIGQe~Vv~~L~~aL~~g------------------------------RL~HAyLFtGPpGvGKTTlAriLA 59 (830)
T PRK07003 11 RPKDFAS-LVGQEHVVRALTHALDGG------------------------------RLHHAYLFTGTRGVGKTTLSRIFA 59 (830)
T ss_pred CCCcHHH-HcCcHHHHHHHHHHHhcC------------------------------CCCeEEEEECCCCCCHHHHHHHHH
Confidence 3345666 899999999998877310 012446999999999999999999
Q ss_pred HhcCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 347 RHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 347 ~~l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
+.+++. +++++..+- .. ...++.++..........+..||||||+|.|
T Consensus 60 KaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~-------rg-VDdIReLIe~a~~~P~~gr~KVIIIDEah~L 131 (830)
T PRK07003 60 KALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASN-------RG-VDEMAALLERAVYAPVDARFKVYMIDEVHML 131 (830)
T ss_pred HHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccccc-------cc-HHHHHHHHHHHHhccccCCceEEEEeChhhC
Confidence 988652 222222210 11 2334555554433333456679999999999
Q ss_pred chhhhccccccccchHHHHHHHHHHHhC
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
... .+|+||+.||+
T Consensus 132 T~~--------------A~NALLKtLEE 145 (830)
T PRK07003 132 TNH--------------AFNAMLKTLEE 145 (830)
T ss_pred CHH--------------HHHHHHHHHHh
Confidence 887 79999999995
No 89
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.28 E-value=1.2e-11 Score=134.15 Aligned_cols=144 Identities=28% Similarity=0.394 Sum_probs=92.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ ++||+.+++.|..++. ...+.+|||+||||||||++|+++++.+
T Consensus 63 ~f~~-iiGqs~~i~~l~~al~-------------------------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDE-IIGQEEGIKALKAALC-------------------------------GPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHH-eeCcHHHHHHHHHHHh-------------------------------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 7999988887765441 1124789999999999999999998753
Q ss_pred ----------CCceEEecchhhh--hcCc----ccccHHHHHH--HHH------HhhchhhhccCceEEEEcCccccchh
Q 012525 350 ----------NVPFVIADATTLT--QAGY----VGEDVESILY--KLL------AQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 350 ----------~~pfv~i~~s~l~--~~g~----vGe~~e~~L~--~lf------~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
+.+|+.++|+... +.++ ++........ ..+ ....+.+..+++++||||||+.|...
T Consensus 111 ~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~ 190 (531)
T TIGR02902 111 KKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV 190 (531)
T ss_pred hhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH
Confidence 3589999987421 1111 1110000000 001 11233455678899999999999998
Q ss_pred hhccccccccchHHHHHHHHHHHhCceeeeecc-----------------eeeecCCeEEEecCCCCcCcC
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEGTETKTFAA-----------------VSKVSRDNLYIKTSGLDSKTL 459 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-----------------~r~~~rd~IiI~TsNid~e~l 459 (461)
.|+.||+.||...+.+... ....+.++++|++|+.+++.+
T Consensus 191 --------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L 247 (531)
T TIGR02902 191 --------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEI 247 (531)
T ss_pred --------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccC
Confidence 8999999999766543211 122345778887777666544
No 90
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.27 E-value=3.7e-11 Score=122.23 Aligned_cols=111 Identities=31% Similarity=0.479 Sum_probs=78.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ ++||+++++.|...+..... .+ ....++||+||||||||++|+++|+++
T Consensus 23 ~~~~-~vG~~~~~~~l~~~l~~~~~--------~~------------------~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 23 SLDE-FIGQEKVKENLKIFIEAAKK--------RG------------------EALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CHHH-hcCcHHHHHHHHHHHHHHHh--------cC------------------CCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 4566 79999999999887742110 00 123689999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+..+..++...+.. ...+..++... ..+.||||||||.+... .++.|+..|+
T Consensus 76 ~~~~~~~~~~~~~~--------~~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e 127 (328)
T PRK00080 76 GVNIRITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAME 127 (328)
T ss_pred CCCeEEEecccccC--------hHHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHH
Confidence 99887666554332 12233333221 25679999999999876 6777888998
Q ss_pred Cceeee
Q 012525 430 GTETKT 435 (461)
Q Consensus 430 g~~v~i 435 (461)
.....+
T Consensus 128 ~~~~~~ 133 (328)
T PRK00080 128 DFRLDI 133 (328)
T ss_pred hcceee
Confidence 765543
No 91
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.5e-11 Score=133.25 Aligned_cols=144 Identities=26% Similarity=0.335 Sum_probs=108.4
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCce
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
.+.|.......+.+.+.... .+....+ ..-...++++|+|||||||||.+++++|++.+..+
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl---~~~~~~~---------------s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~ 246 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPL---RHPALFK---------------SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFL 246 (693)
T ss_pred ccchhHHHHHHHHHHHHhhh---cchhhhh---------------hcCCCCCCCccccCCCCCChHHHHHHHHHHhCcee
Confidence 36788888888888775321 1111111 01123468899999999999999999999999999
Q ss_pred EEecchhhhhcCcccccHHHHHHHHHHhhchhhhccC-ceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCce
Q 012525 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ-QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTE 432 (461)
Q Consensus 354 v~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~-~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~ 432 (461)
+.+++.++.. ++.|+. ++.+++.|.++... + +.+|||||+|.+.++|..... -..++..+|+++|++..
T Consensus 247 ~~i~~peli~-k~~gEt-e~~LR~~f~~a~k~----~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~ 316 (693)
T KOG0730|consen 247 FLINGPELIS-KFPGET-ESNLRKAFAEALKF----QVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLK 316 (693)
T ss_pred EecccHHHHH-hcccch-HHHHHHHHHHHhcc----CCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCc
Confidence 9999999984 588888 99999999988765 4 899999999999998765433 23458999999999664
Q ss_pred eeeecceeeecCCeEEEecCCC
Q 012525 433 TKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 433 v~i~~~~r~~~rd~IiI~TsNi 454 (461)
- ....|+|+++|.
T Consensus 317 ~---------~~~vivl~atnr 329 (693)
T KOG0730|consen 317 P---------DAKVIVLAATNR 329 (693)
T ss_pred C---------cCcEEEEEecCC
Confidence 1 124677777764
No 92
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.1e-11 Score=132.83 Aligned_cols=163 Identities=26% Similarity=0.341 Sum_probs=111.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEE
Q 012525 250 SRWGGSNLGEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVL 329 (461)
Q Consensus 250 ~~w~g~~l~~~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VL 329 (461)
-.|+..... ........+.||+.-+|.+++|+++.+.+.-. ++. + ...+.-++
T Consensus 390 LPWgk~S~E--n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~--kLr------g-----------------s~qGkIlC 442 (906)
T KOG2004|consen 390 LPWGKSSTE--NLDLARAKEILDEDHYGMEDVKERILEFIAVG--KLR------G-----------------SVQGKILC 442 (906)
T ss_pred CCCCCCChh--hhhHHHHHHhhcccccchHHHHHHHHHHHHHH--hhc------c-----------------cCCCcEEE
Confidence 445544322 22445577889988999999999999988411 110 0 01135578
Q ss_pred EEccCCCchHHHHHHHHHhcCCceEEecchhhhhc--------CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 330 L~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~--------g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
|+||||+|||.+|+.||+.++..|++++..-+.+. .|+|....++++.+-.-.. .+.+++|||||+
T Consensus 443 f~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t------~NPliLiDEvDK 516 (906)
T KOG2004|consen 443 FVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT------ENPLILIDEVDK 516 (906)
T ss_pred EeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC------CCceEEeehhhh
Confidence 99999999999999999999999999987654432 5788776777666553222 456889999999
Q ss_pred cchhhhccccccccchHHHHHHHHHHHhCceeeeecc-eeeecC---CeEEEecCCCC
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA-VSKVSR---DNLYIKTSGLD 455 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r~~~r---d~IiI~TsNid 455 (461)
+... .+.+ --++||++||-.+...+-+ ....+. ..+||+|.|.-
T Consensus 517 lG~g-----~qGD-----PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i 564 (906)
T KOG2004|consen 517 LGSG-----HQGD-----PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI 564 (906)
T ss_pred hCCC-----CCCC-----hHHHHHHhcChhhccchhhhccccccchhheEEEEecccc
Confidence 9843 1222 5689999999555443333 222222 68999999954
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2e-11 Score=131.67 Aligned_cols=110 Identities=27% Similarity=0.344 Sum_probs=78.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|++ |+||+.+++.|..++... ..++.+||+||+|||||++|++||+
T Consensus 12 P~~f~d-ivGq~~v~~~L~~~~~~~------------------------------~l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 12 PRCFQE-VIGQAPVVRALSNALDQQ------------------------------YLHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred CCCHHH-hcCCHHHHHHHHHHHHhC------------------------------CCCeeEEEECCCCCCHHHHHHHHHH
Confidence 345666 899999999998888310 0124479999999999999999999
Q ss_pred hcCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 348 HVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 348 ~l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
.+++. ++++++..- .. ...++.+...........+..|+||||+|+|+
T Consensus 61 ~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~-------~~-v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls 132 (509)
T PRK14958 61 CLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR-------TK-VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS 132 (509)
T ss_pred HhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc-------CC-HHHHHHHHHHHhhccccCCcEEEEEEChHhcC
Confidence 88652 344443321 11 23345555544444344566799999999999
Q ss_pred hhhhccccccccchHHHHHHHHHHHhC
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.. .+++||+.||+
T Consensus 133 ~~--------------a~naLLk~LEe 145 (509)
T PRK14958 133 GH--------------SFNALLKTLEE 145 (509)
T ss_pred HH--------------HHHHHHHHHhc
Confidence 88 89999999995
No 94
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.24 E-value=1.6e-11 Score=132.96 Aligned_cols=135 Identities=22% Similarity=0.347 Sum_probs=103.9
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHH----
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYK---- 377 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~---- 377 (461)
.+.++.|..+.+.+..++....+|||+|++||||+++|++|++.. +.||+.++|..+.+. ..+..+..
T Consensus 215 iG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~-----lleseLFG~~~g 289 (526)
T TIGR02329 215 LGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES-----LLEAELFGYEEG 289 (526)
T ss_pred eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh-----HHHHHhcCCccc
Confidence 466788888888888899999999999999999999999999765 569999999987632 11211111
Q ss_pred HHH-----hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecC
Q 012525 378 LLA-----QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTS 452 (461)
Q Consensus 378 lf~-----~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~Ts 452 (461)
.|. ...+.++.+++|+||||||+.|... +|..|+.+|+...+......+..+.+..+|+++
T Consensus 290 aftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat 355 (526)
T TIGR02329 290 AFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAAT 355 (526)
T ss_pred ccccccccccccchhhcCCceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCCCceeeecceEEecc
Confidence 111 1223456678999999999999999 999999999988776655555555588999999
Q ss_pred CCCcCc
Q 012525 453 GLDSKT 458 (461)
Q Consensus 453 Nid~e~ 458 (461)
|.+++.
T Consensus 356 ~~~l~~ 361 (526)
T TIGR02329 356 HCALTT 361 (526)
T ss_pred CCCHHH
Confidence 988643
No 95
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.24 E-value=1.5e-11 Score=132.87 Aligned_cols=131 Identities=27% Similarity=0.412 Sum_probs=101.9
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHh
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~ 381 (461)
.+.+..|..+.+.+..++....+|||+|++||||+++|++|+... +.||+.++|..+.+. ..+ ..+|..
T Consensus 199 iG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~-----~~~---~~lfg~ 270 (534)
T TIGR01817 199 IGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET-----LLE---SELFGH 270 (534)
T ss_pred EECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH-----HHH---HHHcCC
Confidence 467888999999999999999999999999999999999999875 469999999887531 111 122211
Q ss_pred -----------hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEe
Q 012525 382 -----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIK 450 (461)
Q Consensus 382 -----------a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~ 450 (461)
..+.++.+++++||||||+.|... +|..|+.+|+...+......+....++.+|+
T Consensus 271 ~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 336 (534)
T TIGR01817 271 EKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVA 336 (534)
T ss_pred CCCccCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCCCceEeecEEEEE
Confidence 123355678999999999999998 9999999999877665444444444789999
Q ss_pred cCCCCcC
Q 012525 451 TSGLDSK 457 (461)
Q Consensus 451 TsNid~e 457 (461)
|++.+++
T Consensus 337 ~s~~~l~ 343 (534)
T TIGR01817 337 ATNRDLE 343 (534)
T ss_pred eCCCCHH
Confidence 9988753
No 96
>PLN03025 replication factor C subunit; Provisional
Probab=99.24 E-value=3.3e-11 Score=122.19 Aligned_cols=109 Identities=28% Similarity=0.385 Sum_probs=73.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|++ |+|++++++.|...+.. ....|+||+||||||||++|+++|+
T Consensus 9 P~~l~~-~~g~~~~~~~L~~~~~~-------------------------------~~~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 9 PTKLDD-IVGNEDAVSRLQVIARD-------------------------------GNMPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred CCCHHH-hcCcHHHHHHHHHHHhc-------------------------------CCCceEEEECCCCCCHHHHHHHHHH
Confidence 345666 79999999988776620 0125799999999999999999999
Q ss_pred hcCC-----ceEEecchhhhhcCcccccHHHHHHHHH---HhhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 348 HVNV-----PFVIADATTLTQAGYVGEDVESILYKLL---AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 348 ~l~~-----pfv~i~~s~l~~~g~vGe~~e~~L~~lf---~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
++.. .+++++.++.. +. ..++... .............||||||+|.|...
T Consensus 57 ~l~~~~~~~~~~eln~sd~~-----~~---~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-------------- 114 (319)
T PLN03025 57 ELLGPNYKEAVLELNASDDR-----GI---DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-------------- 114 (319)
T ss_pred HHhcccCccceeeecccccc-----cH---HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------
Confidence 8732 35556655432 11 1223222 22111111234679999999999987
Q ss_pred HHHHHHHHHhC
Q 012525 420 VQQALLKMLEG 430 (461)
Q Consensus 420 v~~aLL~~LEg 430 (461)
.+++|++.||.
T Consensus 115 aq~aL~~~lE~ 125 (319)
T PLN03025 115 AQQALRRTMEI 125 (319)
T ss_pred HHHHHHHHHhc
Confidence 79999999983
No 97
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.23 E-value=3.7e-11 Score=126.18 Aligned_cols=85 Identities=32% Similarity=0.491 Sum_probs=64.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
.+++|+||||||||++|++||+.++.+|+.+++.... ...++.++..+.......+..||||||||++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 5799999999999999999999999999998876432 2233444443332222336779999999999877
Q ss_pred hhccccccccchHHHHHHHHHHHhCcee
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEGTET 433 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg~~v 433 (461)
.++.|+..|+...+
T Consensus 108 --------------~q~~LL~~le~~~i 121 (413)
T PRK13342 108 --------------QQDALLPHVEDGTI 121 (413)
T ss_pred --------------HHHHHHHHhhcCcE
Confidence 78999999996543
No 98
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=5.1e-11 Score=130.85 Aligned_cols=109 Identities=28% Similarity=0.385 Sum_probs=77.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++... ...+.+||+||+|||||++|+++|+.
T Consensus 12 ktFdd-VIGQe~vv~~L~~aI~~g------------------------------rl~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 12 RNFNE-LVGQNHVSRALSSALERG------------------------------RLHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred CCHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666 899999999998887310 11255799999999999999999999
Q ss_pred cCC------------------------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+++ .++.+++++-. . ...++.+...........+..|+||||+|.|..
T Consensus 61 LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~-------~-VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 61 LNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRT-------K-VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST 132 (702)
T ss_pred hCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccC-------C-HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH
Confidence 875 23333333211 1 234555555444433345667999999999988
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||+.||+
T Consensus 133 ~--------------A~NALLKtLEE 144 (702)
T PRK14960 133 H--------------SFNALLKTLEE 144 (702)
T ss_pred H--------------HHHHHHHHHhc
Confidence 7 79999999995
No 99
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.22 E-value=1.7e-11 Score=135.11 Aligned_cols=130 Identities=20% Similarity=0.316 Sum_probs=98.3
Q ss_pred CCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHh-
Q 012525 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ- 381 (461)
Q Consensus 306 ~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~- 381 (461)
+.++.+..+.+....++....+|||+|++||||+++|++|++.. +.||+.++|..+... .....+|..
T Consensus 329 g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~--------~~~~elfg~~ 400 (638)
T PRK11388 329 QDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE--------ALAEEFLGSD 400 (638)
T ss_pred ECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH--------HHHHHhcCCC
Confidence 45566677777777777778899999999999999999999876 469999999887531 111222221
Q ss_pred -------hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 382 -------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 382 -------a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
..+.++.+++++||||||+.|... +|..|+.+|+...+......+..+.++.+|+|++.
T Consensus 401 ~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 401 RTDSENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CcCccCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 123455678999999999999999 99999999998776654444444557899999998
Q ss_pred CcC
Q 012525 455 DSK 457 (461)
Q Consensus 455 d~e 457 (461)
++.
T Consensus 467 ~l~ 469 (638)
T PRK11388 467 DLA 469 (638)
T ss_pred CHH
Confidence 753
No 100
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.22 E-value=4.5e-11 Score=134.05 Aligned_cols=121 Identities=25% Similarity=0.356 Sum_probs=89.0
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+|++...+.+...+.. ..+.|+||+||||||||++|++||+.+
T Consensus 180 ~l~~-~igr~~ei~~~~~~L~~-------------------------------~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 180 KIDP-LIGREDELERTIQVLCR-------------------------------RKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCc-ccCcHHHHHHHHHHHhc-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4454 89999999877766621 124789999999999999999999987
Q ss_pred ----------CCceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchH
Q 012525 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (461)
Q Consensus 350 ----------~~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~ 418 (461)
+..++.+++..+.. ..|.|+. +..++.+++++... .+.||||||||.+....+..+ +..
T Consensus 228 ~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~-----~~~ 297 (731)
T TIGR02639 228 AEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSG-----GSM 297 (731)
T ss_pred HhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCC-----ccH
Confidence 66788999887764 3466654 88889988876432 578999999999987632211 112
Q ss_pred HHHHHHHHHHhCce
Q 012525 419 GVQQALLKMLEGTE 432 (461)
Q Consensus 419 ~v~~aLL~~LEg~~ 432 (461)
.+.+.|+..|+.+.
T Consensus 298 ~~~~~L~~~l~~g~ 311 (731)
T TIGR02639 298 DASNLLKPALSSGK 311 (731)
T ss_pred HHHHHHHHHHhCCC
Confidence 26778888887544
No 101
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.22 E-value=4.1e-11 Score=124.89 Aligned_cols=146 Identities=24% Similarity=0.308 Sum_probs=99.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+...|+|||..|..|.....+ ..-.++|+.|+.||||||++|+||..|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------------------------P~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------------------------PQIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------------------------cccceeEEecCCCccHHHHHHHHHHhC
Confidence 3445689999999977554321 112679999999999999999999877
Q ss_pred CC-------ce---------------------------------EEecchhhhhcCcccc-cHHHHHHH-HHHhhchhhh
Q 012525 350 NV-------PF---------------------------------VIADATTLTQAGYVGE-DVESILYK-LLAQAEFNVE 387 (461)
Q Consensus 350 ~~-------pf---------------------------------v~i~~s~l~~~g~vGe-~~e~~L~~-lf~~a~~~v~ 387 (461)
.- +| +.+......+ -.+|. ++++.+.. .-....+.+.
T Consensus 63 p~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateD-rvvGslDi~ka~~~g~~af~PGlLa 141 (423)
T COG1239 63 PEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATED-RLVGSLDIEKALEEGPKAFQPGLLA 141 (423)
T ss_pred CccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchh-hhccccCHHHHHhcCccccCCcchh
Confidence 32 11 1111000000 02222 33333332 1112445677
Q ss_pred ccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCc--eeeeecceeeecCCeEEEecCCCCcCcCCC
Q 012525 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT--ETKTFAAVSKVSRDNLYIKTSGLDSKTLWP 461 (461)
Q Consensus 388 ~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~--~v~i~~~~r~~~rd~IiI~TsNid~e~l~P 461 (461)
.++.|||||||++.|... +++.||..++.+ .+.+......++.++++|+|+|....++.|
T Consensus 142 ~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrp 203 (423)
T COG1239 142 RANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRP 203 (423)
T ss_pred hccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccch
Confidence 899999999999999888 999999999976 344334478888899999999999887765
No 102
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=5.8e-11 Score=127.05 Aligned_cols=109 Identities=30% Similarity=0.431 Sum_probs=74.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++... ..++.+||+|||||||||+|+++|+.
T Consensus 11 ~~~~d-ivGq~~i~~~L~~~i~~~------------------------------~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 11 KTFSE-VVGQDHVKKLIINALKKN------------------------------SISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred CCHHH-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35666 899999999888777310 01245899999999999999999998
Q ss_pred cCC------------------------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
++. .++.++++.-. | ...++.+...+..........||||||+|.|..
T Consensus 60 l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~-----g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 60 LNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNR-----G---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK 131 (472)
T ss_pred hccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccC-----C---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH
Confidence 865 24444433211 1 223444444333222234667999999999987
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||..|+.
T Consensus 132 ~--------------a~~~LLk~LE~ 143 (472)
T PRK14962 132 E--------------AFNALLKTLEE 143 (472)
T ss_pred H--------------HHHHHHHHHHh
Confidence 6 78999999994
No 103
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-11 Score=128.22 Aligned_cols=112 Identities=27% Similarity=0.409 Sum_probs=87.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
-+|||||||||||||++|+-||+..+.+|..+...++.. .|.+....+.++|+++..+ .++-+|||||+|.+..
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP---lG~qaVTkiH~lFDWakkS---~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP---LGAQAVTKIHKLFDWAKKS---RRGLLLFIDEADAFLC 457 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc---cchHHHHHHHHHHHHHhhc---ccceEEEehhhHHHHH
Confidence 489999999999999999999999999999999998885 4566678899999998764 3566899999999999
Q ss_pred hhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+|....++.+ ...+|-.+|-.+ -...++++++.++|..
T Consensus 458 eRnktymSEa-----qRsaLNAlLfRT--------GdqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 458 ERNKTYMSEA-----QRSALNALLFRT--------GDQSRDIVLVLATNRP 495 (630)
T ss_pred HhchhhhcHH-----HHHHHHHHHHHh--------cccccceEEEeccCCc
Confidence 9988777665 445555544411 0123467777777754
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=6.5e-11 Score=124.03 Aligned_cols=117 Identities=22% Similarity=0.263 Sum_probs=77.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|++ |+||+.+++.|..++...... ... .....++.+||+||+|+|||++|+++|+.+.
T Consensus 4 f~~-IiGq~~~~~~L~~~i~~~~~~-~~~--------------------~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 4 WDD-LVGQEAVVAELRAAARAARAD-VAA--------------------AGSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred hhh-ccChHHHHHHHHHHHHhcccc-ccc--------------------cCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 455 899999999999998522110 000 0001246699999999999999999999875
Q ss_pred Cce-----------------------EEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhh
Q 012525 351 VPF-----------------------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE 407 (461)
Q Consensus 351 ~pf-----------------------v~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~ 407 (461)
+.. ..+.... .. .. ...++.++..+.......+..|+||||+|+|...
T Consensus 62 c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~----~~--i~-i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-- 132 (394)
T PRK07940 62 CTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG----LS--IG-VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-- 132 (394)
T ss_pred CCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc----cc--CC-HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--
Confidence 531 1111110 00 11 2345666665554444456779999999999988
Q ss_pred ccccccccchHHHHHHHHHHHhC
Q 012525 408 SLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 408 ~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.||+
T Consensus 133 ------------aanaLLk~LEe 143 (394)
T PRK07940 133 ------------AANALLKAVEE 143 (394)
T ss_pred ------------HHHHHHHHhhc
Confidence 78999999995
No 105
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.20 E-value=4.2e-11 Score=128.87 Aligned_cols=140 Identities=21% Similarity=0.246 Sum_probs=89.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+||+.+++.|..++ ....+++|+||||||||++|+.|+..+
T Consensus 190 d~~d-v~Gq~~~~~al~~aa---------------------------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 190 DLKD-IKGQQHAKRALEIAA---------------------------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CHHH-hcCcHHHHhhhhhhc---------------------------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 3444 899999988777665 123789999999999999999999755
Q ss_pred CC--ceEEecchhhhh-------------cCccc----ccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccc
Q 012525 350 NV--PFVIADATTLTQ-------------AGYVG----EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (461)
Q Consensus 350 ~~--pfv~i~~s~l~~-------------~g~vG----e~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~ 410 (461)
.- .-..+..+.+.. .-|.- ......+-.......+.+..++++|||||||+.+...
T Consensus 236 p~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~----- 310 (499)
T TIGR00368 236 PPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS----- 310 (499)
T ss_pred CCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH-----
Confidence 21 001111111110 00000 0000010000112234566788999999999999888
Q ss_pred cccccchHHHHHHHHHHHhCceeeeecc--eeeecCCeEEEecCCCCcC
Q 012525 411 ISRDVSGEGVQQALLKMLEGTETKTFAA--VSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 411 ~~~~~s~~~v~~aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsNid~e 457 (461)
+++.|++.||...+.+... ....+.++.+|+++|..+.
T Consensus 311 ---------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpc 350 (499)
T TIGR00368 311 ---------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPC 350 (499)
T ss_pred ---------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCccc
Confidence 9999999999887665443 4445568999999998653
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=6.9e-11 Score=133.65 Aligned_cols=110 Identities=31% Similarity=0.330 Sum_probs=75.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|++ ||||+.+++.|..++... ...+.+||+||+|||||++|+.||+
T Consensus 11 P~~f~e-iiGqe~v~~~L~~~i~~~------------------------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 11 PATFAE-VIGQEHVTEPLSTALDSG------------------------------RINHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred CCCHHH-hcCcHHHHHHHHHHHHhC------------------------------CCCceEEEECCCCCCHHHHHHHHHH
Confidence 345666 899999999998887310 0123479999999999999999999
Q ss_pred hcCCc--------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 348 HVNVP--------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 348 ~l~~p--------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
.+++. |++++.... . . ...++.+.....+.....+..|+||||+|+
T Consensus 60 ~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~-----~--~-Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~ 131 (824)
T PRK07764 60 SLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH-----G--G-VDDARELRERAFFAPAESRYKIFIIDEAHM 131 (824)
T ss_pred HhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc-----C--C-HHHHHHHHHHHHhchhcCCceEEEEechhh
Confidence 98642 122221110 0 1 233444444333333345677999999999
Q ss_pred cchhhhccccccccchHHHHHHHHHHHhC
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
|+.. .+|+||++||+
T Consensus 132 lt~~--------------a~NaLLK~LEE 146 (824)
T PRK07764 132 VTPQ--------------GFNALLKIVEE 146 (824)
T ss_pred cCHH--------------HHHHHHHHHhC
Confidence 9988 89999999995
No 107
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.20 E-value=3.3e-11 Score=129.83 Aligned_cols=131 Identities=24% Similarity=0.378 Sum_probs=103.1
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHH-
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA- 380 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~- 380 (461)
.+.+..|..+.+.+..++....+|||+|++||||+++|++|+... +.||+.++|..+.+. ..+. .+|.
T Consensus 190 ig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~-----~~e~---~lfG~ 261 (509)
T PRK05022 190 IGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES-----LAES---ELFGH 261 (509)
T ss_pred eecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH-----HHHH---HhcCc
Confidence 477889999999999999999999999999999999999999875 469999999987532 1111 1222
Q ss_pred ----------hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEe
Q 012525 381 ----------QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIK 450 (461)
Q Consensus 381 ----------~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~ 450 (461)
...+.++.+++++||||||+.|... +|..|+.+|+...+...........++.+|+
T Consensus 262 ~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 327 (509)
T PRK05022 262 VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 327 (509)
T ss_pred cccccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCCcceecceEEEE
Confidence 1223456678999999999999998 9999999999877655444444444889999
Q ss_pred cCCCCcC
Q 012525 451 TSGLDSK 457 (461)
Q Consensus 451 TsNid~e 457 (461)
++|.+.+
T Consensus 328 ~t~~~l~ 334 (509)
T PRK05022 328 ATNRDLR 334 (509)
T ss_pred ecCCCHH
Confidence 9998764
No 108
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=7.4e-11 Score=130.05 Aligned_cols=109 Identities=28% Similarity=0.354 Sum_probs=75.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++... ...+.+||+||+||||||+|++||+.
T Consensus 13 ~~f~d-ivGQe~vv~~L~~~l~~~------------------------------rl~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 13 QTFAE-VVGQEHVLTALANALDLG------------------------------RLHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred CCHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45666 899999999998887310 01233699999999999999999998
Q ss_pred cCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+++. |++++... .. . ...++.+..............|+||||+|+|..
T Consensus 62 L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~--~-VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 62 LNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RT--K-VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR 133 (647)
T ss_pred hhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cC--C-HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH
Confidence 8762 22222221 01 1 233455544433333334667999999999998
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+|+||+.||+
T Consensus 134 ~--------------a~NALLKtLEE 145 (647)
T PRK07994 134 H--------------SFNALLKTLEE 145 (647)
T ss_pred H--------------HHHHHHHHHHc
Confidence 8 89999999995
No 109
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=7.1e-11 Score=133.03 Aligned_cols=116 Identities=24% Similarity=0.340 Sum_probs=74.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|..++... + ..+.+||+||+|||||++|++||+.
T Consensus 13 ~tFdd-IIGQe~Iv~~LknaI~~~--r----------------------------l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 13 ATFEQ-MVGQSHVLHALTNALTQQ--R----------------------------LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred CCHHH-hcCcHHHHHHHHHHHHhC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45666 899999999988877310 0 0233699999999999999999999
Q ss_pred cCCce-------EEe-cchhhhhcC------ccc---ccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccc
Q 012525 349 VNVPF-------VIA-DATTLTQAG------YVG---EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (461)
Q Consensus 349 l~~pf-------v~i-~~s~l~~~g------~vG---e~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~ 411 (461)
+++.. ..+ .|-.+.... +-+ .. ...++.+...........+..|+||||+|+|...
T Consensus 62 Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~k-VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e------ 134 (944)
T PRK14949 62 LNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTK-VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS------ 134 (944)
T ss_pred ccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccC-HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH------
Confidence 87631 110 011111000 000 11 2334554444333333356679999999999988
Q ss_pred ccccchHHHHHHHHHHHhC
Q 012525 412 SRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 412 ~~~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.||+
T Consensus 135 --------AqNALLKtLEE 145 (944)
T PRK14949 135 --------SFNALLKTLEE 145 (944)
T ss_pred --------HHHHHHHHHhc
Confidence 89999999995
No 110
>PHA02244 ATPase-like protein
Probab=99.20 E-value=3.7e-11 Score=124.43 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=88.3
Q ss_pred CCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhh--hcCcccccHHHHHHHHHHhhch
Q 012525 307 AEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT--QAGYVGEDVESILYKLLAQAEF 384 (461)
Q Consensus 307 ~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~--~~g~vGe~~e~~L~~lf~~a~~ 384 (461)
.++.+.........+.....+|||+||||||||++|++||..++.+|+.++...-. -.+++... . .+.....
T Consensus 101 ~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g-----~~~dgpL 174 (383)
T PHA02244 101 SNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-G-----KFHETPF 174 (383)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc-c-----cccchHH
Confidence 33445555556666677788999999999999999999999999999988743110 00111111 0 1110011
Q ss_pred hhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 385 ~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
.-....+++||||||+.+.+. ++..|..+|+...+...........++.+|+|+|.
T Consensus 175 l~A~~~GgvLiLDEId~a~p~--------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 175 YEAFKKGGLFFIDEIDASIPE--------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred HHHhhcCCEEEEeCcCcCCHH--------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 111246789999999999988 89999999998766655444333348999999997
No 111
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1e-10 Score=125.49 Aligned_cols=109 Identities=25% Similarity=0.327 Sum_probs=77.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++.. + ..++++||+||+||||||+|+.+|+.
T Consensus 10 ~~f~d-liGQe~vv~~L~~a~~~------------~------------------ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 10 SSFKD-LVGQDVLVRILRNAFTL------------N------------------KIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred CCHHH-hcCcHHHHHHHHHHHHc------------C------------------CCCceEEEECCCCccHHHHHHHHHHH
Confidence 45666 89999999988877631 0 11357999999999999999999997
Q ss_pred cCC------------------------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+++ .++++++++-. + ...++.+...+......++..|+||||+|.|..
T Consensus 59 LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~-----~---vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~ 130 (491)
T PRK14964 59 LNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNT-----S---VDDIKVILENSCYLPISSKFKVYIIDEVHMLSN 130 (491)
T ss_pred HcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCC-----C---HHHHHHHHHHHHhccccCCceEEEEeChHhCCH
Confidence 643 34455443221 1 234555555444333345778999999999988
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||+.||+
T Consensus 131 ~--------------A~NaLLK~LEe 142 (491)
T PRK14964 131 S--------------AFNALLKTLEE 142 (491)
T ss_pred H--------------HHHHHHHHHhC
Confidence 7 89999999995
No 112
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.18 E-value=4.1e-11 Score=122.79 Aligned_cols=87 Identities=26% Similarity=0.432 Sum_probs=67.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc---eEEecchhhhhcCcccccHHHHHHHHHHhhchhh-hccCceEEEEcCccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQAGYVGEDVESILYKLLAQAEFNV-EAAQQGMVYIDEVDK 401 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p---fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v-~~a~~gVLfIDEID~ 401 (461)
..++|+||||||||+||+.|+.....+ |++++++.-. ...++.+|+.+.... ...+..|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 568999999999999999999988765 7777766543 345666676554332 235678999999999
Q ss_pred cchhhhccccccccchHHHHHHHHHHHhCceeee
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTETKT 435 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i 435 (461)
+... .|+.||..+|.+.+..
T Consensus 234 FNks--------------QQD~fLP~VE~G~I~l 253 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVENGDITL 253 (554)
T ss_pred hhhh--------------hhhcccceeccCceEE
Confidence 9988 7899999999665443
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.7e-10 Score=126.15 Aligned_cols=109 Identities=30% Similarity=0.354 Sum_probs=75.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++... ..++.+||+||+|||||++|++||+.
T Consensus 10 ~~f~e-ivGq~~i~~~L~~~i~~~------------------------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 10 ATFAE-VVGQEHVTEPLSSALDAG------------------------------RINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred CcHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666 899999999998888310 01133799999999999999999998
Q ss_pred cCCc--------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 349 VNVP--------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 349 l~~p--------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
+++. +++++++.. .| ...++.+..............|+||||+|.|
T Consensus 59 l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~-----~g---vd~iRel~~~~~~~P~~~~~KVvIIDEah~L 130 (584)
T PRK14952 59 LNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH-----GG---VDDTRELRDRAFYAPAQSRYRIFIVDEAHMV 130 (584)
T ss_pred hccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc-----cC---HHHHHHHHHHHHhhhhcCCceEEEEECCCcC
Confidence 8642 222222111 11 2334444444333333356779999999999
Q ss_pred chhhhccccccccchHHHHHHHHHHHhC
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
... .+++||+.||+
T Consensus 131 t~~--------------A~NALLK~LEE 144 (584)
T PRK14952 131 TTA--------------GFNALLKIVEE 144 (584)
T ss_pred CHH--------------HHHHHHHHHhc
Confidence 987 89999999995
No 114
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=2e-10 Score=118.77 Aligned_cols=116 Identities=23% Similarity=0.283 Sum_probs=72.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.+++ |+||+.+++.|..++... ..++.+||+||+|||||++|+++|+.
T Consensus 13 ~~~~~-iiGq~~~~~~l~~~~~~~------------------------------~~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 13 QYFRD-IIGQKHIVTAISNGLSLG------------------------------RIHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred Cchhh-ccChHHHHHHHHHHHHcC------------------------------CCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 45666 899999999988877310 01244799999999999999999998
Q ss_pred cCCceEE--------ecchhhhhcC---cc------cccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccc
Q 012525 349 VNVPFVI--------ADATTLTQAG---YV------GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (461)
Q Consensus 349 l~~pfv~--------i~~s~l~~~g---~v------Ge~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~ 411 (461)
+.+.... ..|..+.... +. ... ...++.+..............|+||||+|+|...
T Consensus 62 l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~------ 134 (363)
T PRK14961 62 LNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTK-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH------ 134 (363)
T ss_pred hcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCC-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH------
Confidence 8642100 0011111000 00 011 2334444443332222335679999999999876
Q ss_pred ccccchHHHHHHHHHHHhC
Q 012525 412 SRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 412 ~~~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.||.
T Consensus 135 --------a~naLLk~lEe 145 (363)
T PRK14961 135 --------SFNALLKTLEE 145 (363)
T ss_pred --------HHHHHHHHHhc
Confidence 78999999995
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.9e-10 Score=124.62 Aligned_cols=109 Identities=29% Similarity=0.440 Sum_probs=76.1
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++... ...+.+||+||+|||||++|+++|+.
T Consensus 13 ~~f~d-ivGq~~v~~~L~~~i~~~------------------------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 13 KSFSE-LVGQEHVVRALTNALEQQ------------------------------RLHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred CcHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35566 899999999988887310 01234799999999999999999999
Q ss_pred cCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+++. ++.++... ... ...++.+...+.......+..|+||||+|+|..
T Consensus 62 l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~-------~~~-vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 62 LNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS-------NTQ-VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK 133 (527)
T ss_pred hcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc-------cCC-HHHHHHHHHHHhhCcccCCceEEEEcCcccCCH
Confidence 8652 11221110 011 334555555544433345677999999999998
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||+.||+
T Consensus 134 ~--------------a~naLLK~LEe 145 (527)
T PRK14969 134 S--------------AFNAMLKTLEE 145 (527)
T ss_pred H--------------HHHHHHHHHhC
Confidence 7 89999999995
No 116
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.16 E-value=7.6e-11 Score=127.16 Aligned_cols=153 Identities=17% Similarity=0.240 Sum_probs=96.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHH
Q 012525 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (461)
Q Consensus 266 el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraL 345 (461)
.+...+...|+|++.+|+.|..++... ..... .....+ ....||||+|+||||||++|+++
T Consensus 196 ~l~~si~p~i~G~~~~k~~l~l~l~gg--------------~~~~~----~~~~~~-r~~~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 196 RLSRSLAPSIYGHEDIKKAILLLLFGG--------------VHKNL----PDGMKI-RGDINILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred HHHHhhCccccCcHHHHHHHHHHHhCC--------------Ccccc----CCCccc-cccceEEEeCCCChhHHHHHHHH
Confidence 355666777899999988887766310 00000 000001 22468999999999999999999
Q ss_pred HHhcCCc-eEEe---cchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHH
Q 012525 346 ARHVNVP-FVIA---DATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (461)
Q Consensus 346 A~~l~~p-fv~i---~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~ 421 (461)
++..... |+.. ++..+... .. .......+....+.+..+++++++|||+|+|... .+
T Consensus 257 ~~~~~r~~~~~~~~~~~~~l~~~-~~----~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q 317 (509)
T smart00350 257 EKTAPRAVYTTGKGSSAVGLTAA-VT----RDPETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DR 317 (509)
T ss_pred HHHcCcceEcCCCCCCcCCcccc-ce----EccCcceEEecCccEEecCCCEEEEechhhCCHH--------------HH
Confidence 9987542 3221 22222210 00 0000011111234455678999999999999988 89
Q ss_pred HHHHHHHhCceeeeec--ceeeecCCeEEEecCCCCc
Q 012525 422 QALLKMLEGTETKTFA--AVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 422 ~aLL~~LEg~~v~i~~--~~r~~~rd~IiI~TsNid~ 456 (461)
..|++.||...+.+.- .....+.++.+|+|+|...
T Consensus 318 ~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~ 354 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354 (509)
T ss_pred HHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC
Confidence 9999999988776542 2555666899999999753
No 117
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.15 E-value=1.4e-10 Score=129.02 Aligned_cols=138 Identities=22% Similarity=0.328 Sum_probs=100.9
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc----CcccccHHHHHHH
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYK 377 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~----g~vGe~~e~~L~~ 377 (461)
.+.+..+..+.+.+..++....+|||+|++|||||++|++|+... +.+|+.++|..+... .++|... ..+..
T Consensus 379 iG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~-~~~~g 457 (686)
T PRK15429 379 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER-GAFTG 457 (686)
T ss_pred eecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccc-ccccc
Confidence 467788888888889899999999999999999999999999865 469999999876431 1112110 00000
Q ss_pred HHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 378 lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
......+.++.+.+++||||||+.|... +|..|+.+|+...+...........+..+|+|++.+..
T Consensus 458 ~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~ 523 (686)
T PRK15429 458 ASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 523 (686)
T ss_pred cccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHH
Confidence 0001122345567899999999999998 99999999998776655544444457899999998764
No 118
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.15 E-value=6.8e-11 Score=127.84 Aligned_cols=129 Identities=23% Similarity=0.354 Sum_probs=91.5
Q ss_pred CCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHh--
Q 012525 307 AEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ-- 381 (461)
Q Consensus 307 ~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~-- 381 (461)
.++.+..+.+....++....+|||+|++||||+++|++++... ..||+.++|..+.+. ..+ ..+|..
T Consensus 209 ~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~-----~~e---~elFG~~~ 280 (520)
T PRK10820 209 VSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD-----VVE---SELFGHAP 280 (520)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH-----HHH---HHhcCCCC
Confidence 3444444444555555667889999999999999999998765 369999999987631 111 122221
Q ss_pred ---------hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecC
Q 012525 382 ---------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTS 452 (461)
Q Consensus 382 ---------a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~Ts 452 (461)
..+.++.+.+++||||||+.|... +|..|+.+|+.+.+...........+..+|+|+
T Consensus 281 ~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st 346 (520)
T PRK10820 281 GAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 346 (520)
T ss_pred CCcCCcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEec
Confidence 123355678899999999999998 999999999977665444333334478899988
Q ss_pred CCCcC
Q 012525 453 GLDSK 457 (461)
Q Consensus 453 Nid~e 457 (461)
+.+++
T Consensus 347 ~~~l~ 351 (520)
T PRK10820 347 QKNLV 351 (520)
T ss_pred CCCHH
Confidence 87753
No 119
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=2.6e-10 Score=123.01 Aligned_cols=116 Identities=28% Similarity=0.380 Sum_probs=77.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ ++||+.+++.|..++... ....++||+||+|||||++|+++|+.
T Consensus 18 ~~f~d-liGq~~vv~~L~~ai~~~------------------------------ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 18 SNFAE-LQGQEVLVKVLSYTILND------------------------------RLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred CCHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45666 899999999888877310 11367999999999999999999998
Q ss_pred cCCceE------------Eecchhhhhc---Ccc------cccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhh
Q 012525 349 VNVPFV------------IADATTLTQA---GYV------GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE 407 (461)
Q Consensus 349 l~~pfv------------~i~~s~l~~~---g~v------Ge~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~ 407 (461)
+++... ..+|..+... ++. ... ...++.++..+.......+..|+||||+|.|...
T Consensus 67 Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~-vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~-- 143 (507)
T PRK06645 67 VNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTS-VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG-- 143 (507)
T ss_pred hcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCC-HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH--
Confidence 865210 0011111100 000 011 3455666655544444457789999999999876
Q ss_pred ccccccccchHHHHHHHHHHHhC
Q 012525 408 SLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 408 ~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+++|++.||.
T Consensus 144 ------------a~naLLk~LEe 154 (507)
T PRK06645 144 ------------AFNALLKTLEE 154 (507)
T ss_pred ------------HHHHHHHHHhh
Confidence 79999999994
No 120
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.9e-10 Score=126.51 Aligned_cols=110 Identities=27% Similarity=0.387 Sum_probs=76.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|++ |+||+.+++.|..++... ...+.+||+||+|||||++|++||+
T Consensus 12 P~~f~d-viGQe~vv~~L~~~l~~~------------------------------rl~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 12 PRSFSE-MVGQEHVVQALTNALTQQ------------------------------RLHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred CCCHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345676 789999999998887310 0124469999999999999999999
Q ss_pred hcCCc-----------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcC
Q 012525 348 HVNVP-----------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (461)
Q Consensus 348 ~l~~p-----------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDE 398 (461)
.+++. |++++..+- .. ...++.+...........+..|+||||
T Consensus 61 ~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~-------~~-Vd~iReli~~~~~~p~~g~~KV~IIDE 132 (618)
T PRK14951 61 SLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASN-------RG-VDEVQQLLEQAVYKPVQGRFKVFMIDE 132 (618)
T ss_pred HhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccc-------cC-HHHHHHHHHHHHhCcccCCceEEEEEC
Confidence 88651 222222110 11 234555555444433344567999999
Q ss_pred ccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 399 ID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
+|.|+.. .+|+||+.||+
T Consensus 133 vh~Ls~~--------------a~NaLLKtLEE 150 (618)
T PRK14951 133 VHMLTNT--------------AFNAMLKTLEE 150 (618)
T ss_pred hhhCCHH--------------HHHHHHHhccc
Confidence 9999988 79999999995
No 121
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=2.4e-10 Score=126.29 Aligned_cols=117 Identities=28% Similarity=0.385 Sum_probs=76.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|++ |+||+.+++.|..++... ..++.+||+||+|||||++|++||+
T Consensus 12 P~tFdd-IIGQe~vv~~L~~ai~~~------------------------------rl~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 12 PKTFAD-LVGQEHVVKALQNALDEG------------------------------RLHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred CCCHHH-HcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 345666 899999999998887310 1125689999999999999999999
Q ss_pred hcCCceE-------Ee-cchhhhhcCc---------ccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccc
Q 012525 348 HVNVPFV-------IA-DATTLTQAGY---------VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (461)
Q Consensus 348 ~l~~pfv-------~i-~~s~l~~~g~---------vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~ 410 (461)
.+++.-. .+ .|..+....+ .... ...++.++..........+..||||||+|.|...
T Consensus 61 ~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~g-Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~----- 134 (709)
T PRK08691 61 SLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTG-IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS----- 134 (709)
T ss_pred HhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCC-HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH-----
Confidence 8865310 00 0111110000 0111 2345555554433333346679999999998876
Q ss_pred cccccchHHHHHHHHHHHhC
Q 012525 411 ISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 411 ~~~~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.||+
T Consensus 135 ---------A~NALLKtLEE 145 (709)
T PRK08691 135 ---------AFNAMLKTLEE 145 (709)
T ss_pred ---------HHHHHHHHHHh
Confidence 78999999994
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.7e-10 Score=123.73 Aligned_cols=109 Identities=28% Similarity=0.380 Sum_probs=74.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|..++... ...+.+||+||+|||||++|++||+.
T Consensus 13 ~~f~d-iiGq~~~v~~L~~~i~~~------------------------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 13 QSFAE-VAGQQHALNSLVHALETQ------------------------------KVHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred CcHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666 899999999988877310 01244899999999999999999998
Q ss_pred cCC------------------------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+++ .+++++... ..| ...++.++.............|+||||+|+|..
T Consensus 62 L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-----~~g---vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 62 LNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-----RTG---VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK 133 (546)
T ss_pred hCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc-----ccC---HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH
Confidence 864 222222211 111 123344444333333334677999999999998
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||+.||+
T Consensus 134 ~--------------a~naLLK~LEe 145 (546)
T PRK14957 134 Q--------------SFNALLKTLEE 145 (546)
T ss_pred H--------------HHHHHHHHHhc
Confidence 7 89999999995
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=2.9e-10 Score=124.76 Aligned_cols=111 Identities=28% Similarity=0.335 Sum_probs=74.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHH
Q 012525 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 267 l~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
-.+.|++ |+||+.+++.|..++... .....+||+||+|||||++|++||
T Consensus 11 RP~sf~d-IiGQe~v~~~L~~ai~~~------------------------------ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 11 RPQTFAE-VAGQETVKAILSRAAQEN------------------------------RVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred CCCCHHH-hcCCHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHH
Confidence 3445666 799999999998888310 012568999999999999999999
Q ss_pred HhcCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 347 RHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 347 ~~l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
+.+.+. +++++... ..+ ...++.+..............||||||+|.|
T Consensus 60 k~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~---Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L 131 (624)
T PRK14959 60 KALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRG---IDDAKRLKEAIGYAPMEGRYKVFIIDEAHML 131 (624)
T ss_pred HhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccC---HHHHHHHHHHHHhhhhcCCceEEEEEChHhC
Confidence 988652 22332211 011 1223333222222222345679999999999
Q ss_pred chhhhccccccccchHHHHHHHHHHHhC
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
... .+++||+.||+
T Consensus 132 t~~--------------a~naLLk~LEE 145 (624)
T PRK14959 132 TRE--------------AFNALLKTLEE 145 (624)
T ss_pred CHH--------------HHHHHHHHhhc
Confidence 877 79999999995
No 124
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.6e-10 Score=121.12 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=83.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+++.|||||||||||++.-|||++++..++.++.+++... ..|+.++.... ..+||+|++||.-..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--------~dLr~LL~~t~------~kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--------SDLRHLLLATP------NKSILLIEDIDCSFD 300 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--------HHHHHHHHhCC------CCcEEEEeecccccc
Confidence 3779999999999999999999999999999999887742 33888875544 678999999998765
Q ss_pred hhhccccc----cccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCC----CCcCcCCC
Q 012525 405 KAESLNIS----RDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSG----LDSKTLWP 461 (461)
Q Consensus 405 ~R~~~~~~----~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsN----id~e~l~P 461 (461)
-+...... ......-.++-||..+||-...-. ..-|+|+||| +|+..++|
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-------~ERIivFTTNh~EkLDPALlRp 358 (457)
T KOG0743|consen 301 LRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-------DERIIVFTTNHKEKLDPALLRP 358 (457)
T ss_pred cccccccccccccCCcceeehHHhhhhhccccccCC-------CceEEEEecCChhhcCHhhcCC
Confidence 33221111 101122368889999997653311 1469999999 45666555
No 125
>PRK04195 replication factor C large subunit; Provisional
Probab=99.11 E-value=3.5e-10 Score=121.11 Aligned_cols=121 Identities=30% Similarity=0.421 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHH
Q 012525 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (461)
Q Consensus 264 ~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAr 343 (461)
.+.-.+.|++ |+|++.+++.|...+.... .+ ....++||+||||||||++|+
T Consensus 6 eKyrP~~l~d-lvg~~~~~~~l~~~l~~~~---------~g------------------~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 6 EKYRPKTLSD-VVGNEKAKEQLREWIESWL---------KG------------------KPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred hhcCCCCHHH-hcCCHHHHHHHHHHHHHHh---------cC------------------CCCCeEEEECCCCCCHHHHHH
Confidence 3344456677 8999999999988884211 11 113679999999999999999
Q ss_pred HHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchh--hhccCceEEEEcCccccchhhhccccccccchHHHH
Q 012525 344 TLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN--VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (461)
Q Consensus 344 aLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~--v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~ 421 (461)
+||++++..++.+++++... ...+..+...+... +......||||||+|.|.... ..+.+
T Consensus 58 ala~el~~~~ielnasd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~ 119 (482)
T PRK04195 58 ALANDYGWEVIELNASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGA 119 (482)
T ss_pred HHHHHcCCCEEEEccccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHH
Confidence 99999999999999887542 12233333222111 111256799999999987631 11257
Q ss_pred HHHHHHHhC
Q 012525 422 QALLKMLEG 430 (461)
Q Consensus 422 ~aLL~~LEg 430 (461)
++|+.+|+.
T Consensus 120 ~aL~~~l~~ 128 (482)
T PRK04195 120 RAILELIKK 128 (482)
T ss_pred HHHHHHHHc
Confidence 889998884
No 126
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.11 E-value=8.6e-10 Score=94.56 Aligned_cols=109 Identities=29% Similarity=0.433 Sum_probs=68.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHH-HHHhhchhhhccCceEEEEcCcc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYK-LLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~-lf~~a~~~v~~a~~gVLfIDEID 400 (461)
..+++|+||||||||++++.+++.+ +.+++.+++....... .. ...... .............+.+|+|||++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL-VV---AELFGHFLVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh-HH---HHHhhhhhHhHHHHhhccCCCeEEEEeChh
Confidence 3679999999999999999999998 7888888887665321 10 000000 00111111223467899999999
Q ss_pred ccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCc
Q 012525 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 401 ~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
.+... ....++..|+...... ....+..+|+++|...
T Consensus 95 ~~~~~--------------~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 95 SLSRG--------------AQNALLRVLETLNDLR-----IDRENVRVIGATNRPL 131 (151)
T ss_pred hhhHH--------------HHHHHHHHHHhcCcee-----ccCCCeEEEEecCccc
Confidence 88555 5667777777443221 1123567777777544
No 127
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.10 E-value=2.1e-10 Score=111.90 Aligned_cols=111 Identities=29% Similarity=0.397 Sum_probs=85.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|.+ |+|.++..+.|...... .+ -.|++|.|||||||||-+.+||+
T Consensus 23 P~~l~d-IVGNe~tv~rl~via~~-----------------gn--------------mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 23 PSVLQD-IVGNEDTVERLSVIAKE-----------------GN--------------MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred chHHHH-hhCCHHHHHHHHHHHHc-----------------CC--------------CCceEeeCCCCCchhhHHHHHHH
Confidence 344555 99999999999887730 11 27899999999999999999999
Q ss_pred hcCC-----ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHH
Q 012525 348 HVNV-----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (461)
Q Consensus 348 ~l~~-----pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~ 422 (461)
++-. -++++++++-. |-++...--+.|.+....+......||+|||+|.|+.. .|+
T Consensus 71 ~LLG~~~ke~vLELNASdeR-----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQ 131 (333)
T KOG0991|consen 71 ELLGDSYKEAVLELNASDER-----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQ 131 (333)
T ss_pred HHhChhhhhHhhhccCcccc-----ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHH
Confidence 8733 34555555543 45555555667777766666677789999999999988 899
Q ss_pred HHHHHHh
Q 012525 423 ALLKMLE 429 (461)
Q Consensus 423 aLL~~LE 429 (461)
+|.+.||
T Consensus 132 AlRRtME 138 (333)
T KOG0991|consen 132 ALRRTME 138 (333)
T ss_pred HHHHHHH
Confidence 9999999
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=4e-10 Score=117.98 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=73.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..+++ |+||+.+++.|..++... ..++.+||+||+|||||++|+++|+.
T Consensus 13 ~~~~e-iiGq~~~~~~L~~~~~~~------------------------------~~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 13 KKFAD-ITAQEHITRTIQNSLRMG------------------------------RVGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred CcHhh-ccChHHHHHHHHHHHHhC------------------------------CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 35566 899999999888877310 01245999999999999999999998
Q ss_pred cCCce-E---------Eecc------hhhhh---cC---cccc--cHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNVPF-V---------IADA------TTLTQ---AG---YVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~pf-v---------~i~~------s~l~~---~g---~vGe--~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+.+.- . .-.| ..+.. .. +.+. .....++.+..........+...|+||||+|.|..
T Consensus 62 l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 62 VNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI 141 (397)
T ss_pred hcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH
Confidence 86521 0 0000 00000 00 0010 00233444444333333335667999999999987
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .++.|++.||.
T Consensus 142 ~--------------~~~~LLk~LEe 153 (397)
T PRK14955 142 A--------------AFNAFLKTLEE 153 (397)
T ss_pred H--------------HHHHHHHHHhc
Confidence 6 78999999994
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=4.4e-10 Score=123.05 Aligned_cols=109 Identities=25% Similarity=0.325 Sum_probs=75.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++... ..++.+||+||+|||||++|++||+.
T Consensus 13 ~~f~~-iiGq~~v~~~L~~~i~~~------------------------------~~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 13 QTFSD-LTGQEHVSRTLQNAIDTG------------------------------RVAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred CCHHH-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35666 899999999998887310 01245799999999999999999998
Q ss_pred cCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+++. +++++...- . . ...++.+..........+...|+||||+|.|+.
T Consensus 62 l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~-----~--~-v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 62 LNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASN-----T--G-VDDIRELRENVKYLPSRSRYKIFIIDEVHMLST 133 (576)
T ss_pred hcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCc-----c--C-HHHHHHHHHHHHhccccCCceEEEEEChhhCCH
Confidence 8642 222222110 1 1 233455544443333345677999999999998
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||+.||+
T Consensus 134 ~--------------a~naLLk~LEe 145 (576)
T PRK14965 134 N--------------AFNALLKTLEE 145 (576)
T ss_pred H--------------HHHHHHHHHHc
Confidence 7 89999999995
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4.8e-10 Score=123.63 Aligned_cols=116 Identities=26% Similarity=0.341 Sum_probs=77.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++... ....++||+||+|||||++|+++|+.
T Consensus 13 ~~f~~-liGq~~i~~~L~~~l~~~------------------------------rl~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 13 QRFDE-LVGQEAIATTLKNALISN------------------------------RIAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred CcHhh-ccChHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCChHHHHHHHHHH
Confidence 45566 899999999998888310 01267999999999999999999998
Q ss_pred cCCceEEe----c---c---hhhh--------hc-CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcc
Q 012525 349 VNVPFVIA----D---A---TTLT--------QA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (461)
Q Consensus 349 l~~pfv~i----~---~---s~l~--------~~-g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~ 409 (461)
+.+..... . | ..+. .. ...... ...++.++..+..........||||||+|.|...
T Consensus 62 L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~---- 136 (620)
T PRK14948 62 LNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA---- 136 (620)
T ss_pred hcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH----
Confidence 86521100 0 0 0000 00 000112 3455666655544333456679999999999887
Q ss_pred ccccccchHHHHHHHHHHHhC
Q 012525 410 NISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 410 ~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.||+
T Consensus 137 ----------a~naLLK~LEe 147 (620)
T PRK14948 137 ----------AFNALLKTLEE 147 (620)
T ss_pred ----------HHHHHHHHHhc
Confidence 89999999994
No 131
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=9.2e-10 Score=118.79 Aligned_cols=109 Identities=29% Similarity=0.333 Sum_probs=72.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|..++... ..++.+||+|||||||||+|+++|+.
T Consensus 11 ~~~~d-vvGq~~v~~~L~~~i~~~------------------------------~l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 11 ITFDE-VVGQEHVKEVLLAALRQG------------------------------RLGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred CCHHH-hcChHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35666 899999999998887310 01234699999999999999999998
Q ss_pred cCCc-----------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 349 VNVP-----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 349 l~~p-----------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
+.+. ++.++... .. . ...++.+..............||||||+|.+...
T Consensus 60 l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----~~--~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~ 131 (504)
T PRK14963 60 VNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----NN--S-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS 131 (504)
T ss_pred HhccCCCCCCCCcChhhHHHhcCCCCceEEecccc-----cC--C-HHHHHHHHHHHhhccccCCCeEEEEECccccCHH
Confidence 8531 33333321 01 1 2233444333222222346679999999988766
Q ss_pred hhccccccccchHHHHHHHHHHHhC
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+++|++.|+.
T Consensus 132 --------------a~naLLk~LEe 142 (504)
T PRK14963 132 --------------AFNALLKTLEE 142 (504)
T ss_pred --------------HHHHHHHHHHh
Confidence 79999999985
No 132
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=7.1e-10 Score=121.02 Aligned_cols=109 Identities=29% Similarity=0.401 Sum_probs=77.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++... ...+.+||+||+|||||++|+.+|+.
T Consensus 13 ~~f~~-viGq~~v~~~L~~~i~~~------------------------------~~~hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 13 QTFED-VVGQEHITKTLKNAIKQG------------------------------KISHAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred CcHHh-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35666 899999999998887310 01245899999999999999999998
Q ss_pred cCC------------------------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+++ ++++++++. ... ...++.+..........++..|+||||+|.|+.
T Consensus 62 l~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-------~~~-vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 62 VNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS-------NNG-VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST 133 (559)
T ss_pred hcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-------cCC-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 864 223333221 011 344555555554444456778999999999987
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||+.||+
T Consensus 134 ~--------------a~naLLKtLEe 145 (559)
T PRK05563 134 G--------------AFNALLKTLEE 145 (559)
T ss_pred H--------------HHHHHHHHhcC
Confidence 7 89999999994
No 133
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.07 E-value=3.9e-10 Score=123.79 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=85.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC--ceEEecchhhhhcCcccc-cHHHHHH-HHHHhhchhhhccCceEEEEcCccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGE-DVESILY-KLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~--pfv~i~~s~l~~~g~vGe-~~e~~L~-~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
.+|||.|+||||||++|++|++.+.. ||+.+...... ..++|. +++..+. ..+....+.+..++++|||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~-d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTE-DRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccch-hhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 68999999999999999999998854 69988863222 223333 1111111 1122334456678899999999999
Q ss_pred cchhhhccccccccchHHHHHHHHHHHhCceeeeec--ceeeecCCeEEEecCCCCc
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFA--AVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~--~~r~~~rd~IiI~TsNid~ 456 (461)
+.+. +|+.|++.|+.+++++.. ....++.++.+|+|+|...
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e 138 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE 138 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc
Confidence 9999 999999999988766553 3556677899999999874
No 134
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.07 E-value=9.8e-10 Score=110.57 Aligned_cols=122 Identities=26% Similarity=0.362 Sum_probs=77.6
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHH
Q 012525 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 263 t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLA 342 (461)
..+.....+++ ++|++.+++.|..++.. ....++||+||||||||++|
T Consensus 6 ~~ky~P~~~~~-~~g~~~~~~~L~~~~~~-------------------------------~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 6 TEKYRPALLED-ILGQDEVVERLSRAVDS-------------------------------PNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHhhCCCcHHH-hcCCHHHHHHHHHHHhC-------------------------------CCCceEEEECCCCCCHHHHH
Confidence 33444556777 68999999988887720 01147999999999999999
Q ss_pred HHHHHhcC-----CceEEecchhhhhcC--c----------ccc------cHHHHHHHHHHhhchhh-hccCceEEEEcC
Q 012525 343 KTLARHVN-----VPFVIADATTLTQAG--Y----------VGE------DVESILYKLLAQAEFNV-EAAQQGMVYIDE 398 (461)
Q Consensus 343 raLA~~l~-----~pfv~i~~s~l~~~g--~----------vGe------~~e~~L~~lf~~a~~~v-~~a~~gVLfIDE 398 (461)
+++++++. .+++.+++.++.... . .+. .....++.+........ ......+|||||
T Consensus 54 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe 133 (337)
T PRK12402 54 RALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDN 133 (337)
T ss_pred HHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeC
Confidence 99999874 356777776643210 0 000 01122333222221111 123456999999
Q ss_pred ccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 399 ID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
+|.+... .++.|+.+|+.
T Consensus 134 ~~~l~~~--------------~~~~L~~~le~ 151 (337)
T PRK12402 134 AEALRED--------------AQQALRRIMEQ 151 (337)
T ss_pred cccCCHH--------------HHHHHHHHHHh
Confidence 9998766 67889888883
No 135
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.07 E-value=1e-09 Score=120.98 Aligned_cols=97 Identities=32% Similarity=0.468 Sum_probs=65.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc----------CCceEEecchhhhh------cCcccccHHHH---HHHHHH-----
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQ------AGYVGEDVESI---LYKLLA----- 380 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l----------~~pfv~i~~s~l~~------~g~vGe~~e~~---L~~lf~----- 380 (461)
+.+++|+||+||||||+|+++++.. +.+|+.+++..+.. ..+++...+.. ....+.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~ 254 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVP 254 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999998765 35789999876521 01222111111 011111
Q ss_pred -hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeee
Q 012525 381 -QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKT 435 (461)
Q Consensus 381 -~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i 435 (461)
.....+..+.++||||||++.|... .|+.|+++|+...+.+
T Consensus 255 ~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 255 EPKTGLVTDAHGGVLFIDEIGELDPL--------------LQNKLLKVLEDKRVEF 296 (615)
T ss_pred chhcCchhhcCCCeEEEeccccCCHH--------------HHHHHHHHHhhCeEEe
Confidence 1223344567899999999999988 8999999999766543
No 136
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.05 E-value=3.8e-10 Score=128.16 Aligned_cols=121 Identities=26% Similarity=0.321 Sum_probs=88.8
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l- 349 (461)
++. |+|+++.++.+...+.. ..+.|+||+||||||||++|+.||+.+
T Consensus 178 ~~~-~igr~~ei~~~~~~L~r-------------------------------~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDP-VIGREKEIERVIQILGR-------------------------------RTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCC-CCCcHHHHHHHHHHHcc-------------------------------cccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 444 89999999998888731 124789999999999999999999876
Q ss_pred ---------CCceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 350 ---------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 350 ---------~~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
+..++.++...+.. ..|.|+. +..++.++..+.. ..+.||||||||.+....... ... .
T Consensus 226 ~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~-g~~-----~ 294 (821)
T CHL00095 226 NRDVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAE-GAI-----D 294 (821)
T ss_pred hCCCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCC-Ccc-----c
Confidence 36789999887653 4566654 7888888876643 267899999999998763211 111 2
Q ss_pred HHHHHHHHHhCceee
Q 012525 420 VQQALLKMLEGTETK 434 (461)
Q Consensus 420 v~~aLL~~LEg~~v~ 434 (461)
+.+.|...|..+.+.
T Consensus 295 ~a~lLkp~l~rg~l~ 309 (821)
T CHL00095 295 AANILKPALARGELQ 309 (821)
T ss_pred HHHHhHHHHhCCCcE
Confidence 667777788755443
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.04 E-value=1.1e-09 Score=109.86 Aligned_cols=115 Identities=21% Similarity=0.268 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHH
Q 012525 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (461)
Q Consensus 264 ~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAr 343 (461)
.+...+.|++ |+|++.+++.|...+.. + ..+..+||+||+|+|||++|+
T Consensus 13 ~kyrP~~~~~-~~~~~~~~~~l~~~~~~------------~------------------~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 13 QKYRPSTIDE-CILPAADKETFKSIVKK------------G------------------RIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred eccCCCcHHH-hcCcHHHHHHHHHHHhc------------C------------------CCCeEEEeeCcCCCCHHHHHH
Confidence 3344456676 79999999988887730 0 012345569999999999999
Q ss_pred HHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHH
Q 012525 344 TLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (461)
Q Consensus 344 aLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~a 423 (461)
++++.++.+++.+++.+ ... ......+........ ......||||||+|.+... ..++.
T Consensus 62 ~l~~~~~~~~~~i~~~~-~~~----~~i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~-------------~~~~~ 120 (316)
T PHA02544 62 ALCNEVGAEVLFVNGSD-CRI----DFVRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA-------------DAQRH 120 (316)
T ss_pred HHHHHhCccceEeccCc-ccH----HHHHHHHHHHHHhhc---ccCCCeEEEEECcccccCH-------------HHHHH
Confidence 99999998888888876 210 011111222111111 1135679999999988332 15677
Q ss_pred HHHHHhC
Q 012525 424 LLKMLEG 430 (461)
Q Consensus 424 LL~~LEg 430 (461)
|..+|+.
T Consensus 121 L~~~le~ 127 (316)
T PHA02544 121 LRSFMEA 127 (316)
T ss_pred HHHHHHh
Confidence 8888884
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.04 E-value=4.2e-10 Score=128.27 Aligned_cols=122 Identities=25% Similarity=0.316 Sum_probs=86.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+. |+|++...+.+...+.. ....++||+||||||||++|++||+.
T Consensus 175 ~~l~~-vigr~~ei~~~i~iL~r-------------------------------~~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 175 GKLDP-VIGRDEEIRRTIQVLQR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCCCc-CCCCHHHHHHHHHHHhc-------------------------------CCcCceEEECCCCCCHHHHHHHHHHH
Confidence 34555 89999987777776631 12368999999999999999999998
Q ss_pred c----------CCceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccch
Q 012525 349 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (461)
Q Consensus 349 l----------~~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~ 417 (461)
+ +.+++.++...+.. ..|.|+. +..++.++..... ...+.||||||||.+....+.. +.
T Consensus 223 i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~~~------~~ 292 (857)
T PRK10865 223 IINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKAD------GA 292 (857)
T ss_pred hhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCCCc------cc
Confidence 7 66888888876653 3456654 7788888865432 1257799999999998763211 11
Q ss_pred HHHHHHHHHHHhCce
Q 012525 418 EGVQQALLKMLEGTE 432 (461)
Q Consensus 418 ~~v~~aLL~~LEg~~ 432 (461)
..+.+.|...|+.+.
T Consensus 293 ~d~~~~lkp~l~~g~ 307 (857)
T PRK10865 293 MDAGNMLKPALARGE 307 (857)
T ss_pred hhHHHHhcchhhcCC
Confidence 226777877777443
No 139
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=1.3e-09 Score=119.76 Aligned_cols=115 Identities=29% Similarity=0.358 Sum_probs=77.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+.|++ |+||+.+++.|..++.. + ..+..+||+||+|+|||++|++||+
T Consensus 20 P~~f~d-liGq~~~v~~L~~~~~~------------g------------------ri~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 20 PQTFDD-LIGQEAMVRTLTNAFET------------G------------------RIAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred CCCHHH-hcCcHHHHHHHHHHHHc------------C------------------CCCceEEEECCCCCCHHHHHHHHHH
Confidence 345666 89999999998887731 0 1135699999999999999999999
Q ss_pred hcCCceEEec-------------chhhhh-----------cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 348 HVNVPFVIAD-------------ATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 348 ~l~~pfv~i~-------------~s~l~~-----------~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
.+++.....+ |..+.. ....+ ...++.++.........+...|+||||+|.|.
T Consensus 69 ~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 69 ALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTG---VDDIREIIESVRYRPVSARYKVYIIDEVHMLS 145 (598)
T ss_pred hhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCC---HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC
Confidence 8865321111 111110 00111 23455555544444344577899999999998
Q ss_pred hhhhccccccccchHHHHHHHHHHHhC
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.. .+++||+.||+
T Consensus 146 ~~--------------a~naLLKtLEe 158 (598)
T PRK09111 146 TA--------------AFNALLKTLEE 158 (598)
T ss_pred HH--------------HHHHHHHHHHh
Confidence 77 79999999994
No 140
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.02 E-value=6.6e-10 Score=116.70 Aligned_cols=131 Identities=21% Similarity=0.363 Sum_probs=98.6
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHH-
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA- 380 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~- 380 (461)
.+.+..+..+.+....+.....+|+|+|++||||+++|++++... ..+|+.++|..+.+. ..+ ..+|.
T Consensus 142 ig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~-----~~~---~~lfg~ 213 (445)
T TIGR02915 142 ITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN-----LLE---SELFGY 213 (445)
T ss_pred eecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH-----HHH---HHhcCC
Confidence 345566777777777777778899999999999999999999876 458999999987531 111 11222
Q ss_pred ----------hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEe
Q 012525 381 ----------QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIK 450 (461)
Q Consensus 381 ----------~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~ 450 (461)
...+.+..+++++||||||+.|... +|..|+++|+...+.........+.++.+|+
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~ 279 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN--------------LQAKLLRFLQERVIERLGGREEIPVDVRIVC 279 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHH--------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEE
Confidence 1223455678999999999999998 9999999999877665444444455889999
Q ss_pred cCCCCcC
Q 012525 451 TSGLDSK 457 (461)
Q Consensus 451 TsNid~e 457 (461)
|++.+.+
T Consensus 280 ~~~~~l~ 286 (445)
T TIGR02915 280 ATNQDLK 286 (445)
T ss_pred ecCCCHH
Confidence 9998854
No 141
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.01 E-value=2.6e-09 Score=108.59 Aligned_cols=109 Identities=30% Similarity=0.458 Sum_probs=74.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..+++ |+||+.+++.|...+.. + ..+..+||+||+|+|||++|+++|+.
T Consensus 11 ~~~~~-iig~~~~~~~l~~~~~~------------~------------------~~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 11 QTFED-VIGQEHIVQTLKNAIKN------------G------------------RIAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred CcHhh-ccCcHHHHHHHHHHHHc------------C------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555 89999999999887731 0 11245899999999999999999998
Q ss_pred cCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+... ++.++... ... ...++.++..+.......+..||+|||+|.+..
T Consensus 60 l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 60 LNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS-------NNG-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK 131 (355)
T ss_pred hcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-------cCC-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH
Confidence 7532 12222110 011 223455555443333335667999999999987
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++|++.||+
T Consensus 132 ~--------------~~~~Ll~~le~ 143 (355)
T TIGR02397 132 S--------------AFNALLKTLEE 143 (355)
T ss_pred H--------------HHHHHHHHHhC
Confidence 6 78999999985
No 142
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.01 E-value=1.5e-09 Score=121.56 Aligned_cols=85 Identities=31% Similarity=0.451 Sum_probs=61.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhh-ccCceEEEEcCccccch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE-AAQQGMVYIDEVDKITK 404 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~-~a~~gVLfIDEID~L~~ 404 (461)
.+++|+||||||||++|+++|+.++..|+.+++.... ...++..+..+...+. ..+..||||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh---------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5799999999999999999999999999888876321 1112222222211111 12467999999999988
Q ss_pred hhhccccccccchHHHHHHHHHHHhCcee
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEGTET 433 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg~~v 433 (461)
. .+++|+..|+...+
T Consensus 124 ~--------------qQdaLL~~lE~g~I 138 (725)
T PRK13341 124 A--------------QQDALLPWVENGTI 138 (725)
T ss_pred H--------------HHHHHHHHhcCceE
Confidence 7 78999999986543
No 143
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.01 E-value=7.4e-10 Score=117.21 Aligned_cols=131 Identities=23% Similarity=0.366 Sum_probs=97.6
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHh
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~ 381 (461)
.+.+..+..+.+....+.....+|||.|++|||||++|++|++.. +.+|+.++|..+.+. ..-..+|..
T Consensus 141 ig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~--------~~~~~lfg~ 212 (469)
T PRK10923 141 IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD--------LIESELFGH 212 (469)
T ss_pred eecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH--------HHHHHhcCC
Confidence 344566666666777777788999999999999999999999976 469999999887531 111222221
Q ss_pred -----------hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEe
Q 012525 382 -----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIK 450 (461)
Q Consensus 382 -----------a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~ 450 (461)
..+.++.+.+|+||||||+.|... +|..|+++|+...+...........++.+|+
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~ 278 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD--------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIA 278 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH--------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEE
Confidence 123355678899999999999998 9999999999877665444333344789999
Q ss_pred cCCCCcC
Q 012525 451 TSGLDSK 457 (461)
Q Consensus 451 TsNid~e 457 (461)
|++.+.+
T Consensus 279 ~~~~~l~ 285 (469)
T PRK10923 279 ATHQNLE 285 (469)
T ss_pred eCCCCHH
Confidence 9988753
No 144
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=2.6e-09 Score=116.93 Aligned_cols=109 Identities=28% Similarity=0.396 Sum_probs=74.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|..++.. + ..++.+||+||+|||||++|+++|+.
T Consensus 13 ~~F~d-IIGQe~iv~~L~~aI~~------------~------------------rl~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 13 HNFKQ-IIGQELIKKILVNAILN------------N------------------KLTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred CCHHH-hcCcHHHHHHHHHHHHc------------C------------------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35666 89999999988887731 0 11255899999999999999999998
Q ss_pred cCC------------------------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+.+ .++.+++.. .. . ...++.+...........+..|++|||+|.|..
T Consensus 62 L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-----~i--g-Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~ 133 (605)
T PRK05896 62 INCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS-----NN--G-VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST 133 (605)
T ss_pred hcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc-----cc--C-HHHHHHHHHHHHhchhhCCcEEEEEechHhCCH
Confidence 853 122222211 01 1 233455544433333334677999999999987
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||+.||+
T Consensus 134 ~--------------A~NaLLKtLEE 145 (605)
T PRK05896 134 S--------------AWNALLKTLEE 145 (605)
T ss_pred H--------------HHHHHHHHHHh
Confidence 6 78999999994
No 145
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.6e-09 Score=108.01 Aligned_cols=99 Identities=27% Similarity=0.363 Sum_probs=69.4
Q ss_pred Cc-EEEEccCCCchHHHHHHHHHhcC------------------------CceEEecchhhhhcCcccccHHHHHHHHHH
Q 012525 326 SN-VLLMGPTGSGKTLLAKTLARHVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLA 380 (461)
Q Consensus 326 ~~-VLL~GPPGTGKTtLAraLA~~l~------------------------~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~ 380 (461)
.| +||+||||||||++|.+||+.+. -.|+++++++..... .....++.+..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~----i~~~~vr~~~~ 99 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID----IIVEQVRELAE 99 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc----chHHHHHHHHH
Confidence 44 99999999999999999999886 367777777655321 11333444443
Q ss_pred hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCC
Q 012525 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSG 453 (461)
Q Consensus 381 ~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsN 453 (461)
.........+.-|++|||+|.|+.. .+++|++.||... .+..+|.++|
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lEep~-----------~~~~~il~~n 147 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLEEPP-----------KNTRFILITN 147 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhccCC-----------CCeEEEEEcC
Confidence 3322222245669999999999998 8999999999443 2456666666
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=2.5e-09 Score=117.34 Aligned_cols=116 Identities=25% Similarity=0.319 Sum_probs=73.1
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|..++... ...+.+||+||+|+|||++|++||+.
T Consensus 13 ~~~~e-iiGq~~~~~~L~~~i~~~------------------------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 13 QTFAE-LVGQEHVVQTLRNAIAEG------------------------------RVAHAYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred CCHHH-hcCCHHHHHHHHHHHHhC------------------------------CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35566 899999999998877310 01245799999999999999999998
Q ss_pred cCCceEE--------e-cchhhhhc---Cc------ccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccc
Q 012525 349 VNVPFVI--------A-DATTLTQA---GY------VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (461)
Q Consensus 349 l~~pfv~--------i-~~s~l~~~---g~------vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~ 410 (461)
+++.... + .|..+... ++ .... ...++.+..............||||||+|.|...
T Consensus 62 l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~-vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~----- 135 (585)
T PRK14950 62 VNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTS-VDDAREIIERVQFRPALARYKVYIIDEVHMLSTA----- 135 (585)
T ss_pred hcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCC-HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH-----
Confidence 8642110 0 00111100 00 0011 2233444433332222356779999999999877
Q ss_pred cccccchHHHHHHHHHHHhC
Q 012525 411 ISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 411 ~~~~~s~~~v~~aLL~~LEg 430 (461)
.++.||+.||+
T Consensus 136 ---------a~naLLk~LEe 146 (585)
T PRK14950 136 ---------AFNALLKTLEE 146 (585)
T ss_pred ---------HHHHHHHHHhc
Confidence 78999999995
No 147
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.00 E-value=6.4e-10 Score=119.62 Aligned_cols=117 Identities=30% Similarity=0.425 Sum_probs=83.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|++ |+||+.+++.|..++.+ .++ .+..||.||-|||||++||.+|+.
T Consensus 13 ~~F~e-vvGQe~v~~~L~nal~~--~ri----------------------------~hAYlfsG~RGvGKTt~Ari~Aka 61 (515)
T COG2812 13 KTFDD-VVGQEHVVKTLSNALEN--GRI----------------------------AHAYLFSGPRGVGKTTIARILAKA 61 (515)
T ss_pred ccHHH-hcccHHHHHHHHHHHHh--Ccc----------------------------hhhhhhcCCCCcCchhHHHHHHHH
Confidence 45666 79999999999999952 122 145899999999999999999999
Q ss_pred cCCc-------eEEec-chhhhhcCc---c-----cccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc
Q 012525 349 VNVP-------FVIAD-ATTLTQAGY---V-----GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 349 l~~p-------fv~i~-~s~l~~~g~---v-----Ge~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
+++. +-.+. |..+....+ + .....+.++.+.+...+.....+.-|++|||+|.|+..
T Consensus 62 lNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~------- 134 (515)
T COG2812 62 LNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ------- 134 (515)
T ss_pred hcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH-------
Confidence 8763 11111 111111000 0 00113556777777777777778889999999999988
Q ss_pred cccchHHHHHHHHHHHhC
Q 012525 413 RDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg 430 (461)
..|+||+.||+
T Consensus 135 -------afNALLKTLEE 145 (515)
T COG2812 135 -------AFNALLKTLEE 145 (515)
T ss_pred -------HHHHHhccccc
Confidence 89999999994
No 148
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=2.8e-09 Score=117.46 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=74.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+||+.+++.|..++... ...+.+||+||+||||||+|++||+.+
T Consensus 14 ~f~e-ivGQe~i~~~L~~~i~~~------------------------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 14 KFAD-ITAQEHITHTIQNSLRMD------------------------------RVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4555 899999999988877310 112459999999999999999999998
Q ss_pred CCceEE----------ec------chhhhh---cC---cccc--cHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 350 NVPFVI----------AD------ATTLTQ---AG---YVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 350 ~~pfv~----------i~------~s~l~~---~g---~vGe--~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
.+.-.. -. |..+.. .. +.+. .....++.+..........+...|+||||+|.|...
T Consensus 63 ~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~ 142 (620)
T PRK14954 63 NCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA 142 (620)
T ss_pred CCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH
Confidence 762100 00 000100 00 0110 002344444444333233456779999999999877
Q ss_pred hhccccccccchHHHHHHHHHHHhC
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.||+
T Consensus 143 --------------a~naLLK~LEe 153 (620)
T PRK14954 143 --------------AFNAFLKTLEE 153 (620)
T ss_pred --------------HHHHHHHHHhC
Confidence 78999999995
No 149
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.99 E-value=8.1e-10 Score=119.01 Aligned_cols=121 Identities=16% Similarity=0.247 Sum_probs=79.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc--eEEecchhhhh-------------cCcccccHHHHHHHHHH----hhchh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP--FVIADATTLTQ-------------AGYVGEDVESILYKLLA----QAEFN 385 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p--fv~i~~s~l~~-------------~g~vGe~~e~~L~~lf~----~a~~~ 385 (461)
..+++|+||+|+|||+|++.|+..+.-. -..+..+.+.. .-|.-.........++. ...+.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 4789999999999999999999866321 01112111110 00100000011111221 23355
Q ss_pred hhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc--eeeecCCeEEEecCCCCcCcC
Q 012525 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA--VSKVSRDNLYIKTSGLDSKTL 459 (461)
Q Consensus 386 v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsNid~e~l 459 (461)
+..++++|||||||+.+..+ +++.|++.||.+.+.+... ....+.++.+|+|+|..+...
T Consensus 290 l~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 290 ISLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred hhhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 67789999999999998887 9999999999888876554 444567999999999986443
No 150
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.99 E-value=4.2e-10 Score=100.54 Aligned_cols=108 Identities=30% Similarity=0.507 Sum_probs=74.4
Q ss_pred CCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC---ceEEecchhhhhcCcccccHHHHHHHHHHhhc
Q 012525 307 AEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV---PFVIADATTLTQAGYVGEDVESILYKLLAQAE 383 (461)
Q Consensus 307 ~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~---pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~ 383 (461)
.|..|+++.+....++....+|||+|++||||+++|++|+..... +|+.+++..+. .+++..
T Consensus 3 ~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~~-- 67 (138)
T PF14532_consen 3 KSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLEQ-- 67 (138)
T ss_dssp SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHHH--
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHHH--
Confidence 344455555555555666789999999999999999999987653 77777777543 122222
Q ss_pred hhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 384 ~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
+.+++|||+|||.|... .|..|+..|+... ..+..+|+|+..+.+.
T Consensus 68 -----a~~gtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~ 113 (138)
T PF14532_consen 68 -----AKGGTLYLKNIDRLSPE--------------AQRRLLDLLKRQE----------RSNVRLIASSSQDLEE 113 (138)
T ss_dssp -----CTTSEEEEECGCCS-HH--------------HHHHHHHHHHHCT----------TTTSEEEEEECC-CCC
T ss_pred -----cCCCEEEECChHHCCHH--------------HHHHHHHHHHhcC----------CCCeEEEEEeCCCHHH
Confidence 37889999999999998 8999999998421 1245777777766554
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=2.9e-09 Score=113.51 Aligned_cols=109 Identities=27% Similarity=0.358 Sum_probs=72.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|...+.. + ..+..+||+||+|+|||++|+++|+.
T Consensus 14 ~~~~d-iiGq~~~v~~L~~~i~~------------~------------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 14 QTFSE-ILGQDAVVAVLKNALRF------------N------------------RAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred CCHHH-hcCcHHHHHHHHHHHHc------------C------------------CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45666 89999999988887731 0 11255899999999999999999998
Q ss_pred cCCc-------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 349 VNVP-------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 349 l~~p-------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
+... ++.++... ..+ ...++.+..............||||||+|.|.
T Consensus 63 l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~-----~~g---id~ir~i~~~l~~~~~~~~~kvvIIdead~lt 134 (451)
T PRK06305 63 LNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS-----HRG---IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT 134 (451)
T ss_pred hcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc-----cCC---HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC
Confidence 7542 11221110 111 12233333222222223567899999999998
Q ss_pred hhhhccccccccchHHHHHHHHHHHhC
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.. .+++|++.||.
T Consensus 135 ~~--------------~~n~LLk~lEe 147 (451)
T PRK06305 135 KE--------------AFNSLLKTLEE 147 (451)
T ss_pred HH--------------HHHHHHHHhhc
Confidence 77 78999999995
No 152
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.99 E-value=9.9e-10 Score=115.48 Aligned_cols=130 Identities=21% Similarity=0.384 Sum_probs=97.4
Q ss_pred CCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHh-
Q 012525 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ- 381 (461)
Q Consensus 306 ~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~- 381 (461)
+.+..+..+.+....+.....++|+.|++||||+++|++++... +.+|+.++|..+.+. ..-..+|..
T Consensus 147 ~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~--------~~~~~lfg~~ 218 (457)
T PRK11361 147 TNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES--------LLESELFGHE 218 (457)
T ss_pred cccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH--------HHHHHhcCCC
Confidence 44566777777777777888999999999999999999998765 469999999877531 111122221
Q ss_pred ----------hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEec
Q 012525 382 ----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKT 451 (461)
Q Consensus 382 ----------a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~T 451 (461)
..+.+..+.+++||||||+.|... +|..|+.+|+...+...........++.+|+|
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~ 284 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAA 284 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEe
Confidence 123455678899999999999998 89999999998776544444444457899999
Q ss_pred CCCCcC
Q 012525 452 SGLDSK 457 (461)
Q Consensus 452 sNid~e 457 (461)
+|.+.+
T Consensus 285 t~~~l~ 290 (457)
T PRK11361 285 TNRDLQ 290 (457)
T ss_pred CCCCHH
Confidence 998754
No 153
>PRK15115 response regulator GlrR; Provisional
Probab=98.99 E-value=1.9e-09 Score=113.12 Aligned_cols=130 Identities=21% Similarity=0.362 Sum_probs=94.5
Q ss_pred CCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHh-
Q 012525 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ- 381 (461)
Q Consensus 306 ~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~- 381 (461)
+.+..+....+....+.....+|+|.|++|||||++|+++++.. +.+|+.++|..+.+. ..-..+|..
T Consensus 138 g~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~--------~~~~~lfg~~ 209 (444)
T PRK15115 138 TRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ--------LLESELFGHA 209 (444)
T ss_pred ccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH--------HHHHHhcCCC
Confidence 34455555666666666677889999999999999999999875 469999999987531 111122221
Q ss_pred ----------hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEec
Q 012525 382 ----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKT 451 (461)
Q Consensus 382 ----------a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~T 451 (461)
..+.+..+.+++||||||+.|... .|..|+..|+...+...........++.+|+|
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~ 275 (444)
T PRK15115 210 RGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISA 275 (444)
T ss_pred cCCCCCCccCCCCcEEECCCCEEEEEccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEe
Confidence 123456678899999999999998 89999999997776544333333347899999
Q ss_pred CCCCcC
Q 012525 452 SGLDSK 457 (461)
Q Consensus 452 sNid~e 457 (461)
++.++.
T Consensus 276 ~~~~l~ 281 (444)
T PRK15115 276 THRDLP 281 (444)
T ss_pred CCCCHH
Confidence 987753
No 154
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.98 E-value=2e-09 Score=111.27 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=47.2
Q ss_pred hhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 386 v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+..++.||+-|+|+.+...+ +++.||.+++++.+.+.......+.+.++|+|+|..
T Consensus 232 l~~aNrGi~~f~Ei~K~~~~--------------~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~ 287 (361)
T smart00763 232 LNRANRGILEFVEMFKADIK--------------FLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNES 287 (361)
T ss_pred cccccCceEEEeehhcCCHH--------------HHHHHhhhhhcceEecCCcccccccceEEEEeCCHH
Confidence 45577899999999999888 999999999999988776555666688999999965
No 155
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=4e-09 Score=117.45 Aligned_cols=117 Identities=24% Similarity=0.327 Sum_probs=76.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 268 ~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|++ |+||+.+++.|..++... ...+.+||+||+|||||++|+++|+
T Consensus 14 P~~f~d-IiGQe~~v~~L~~aI~~~------------------------------rl~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 14 PKTFDD-IVGQDHIVQTLKNIIKSN------------------------------KISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred CCCHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 345666 899999999998888310 0124579999999999999999999
Q ss_pred hcCCceEE---ecchhh---hh--cCcc-----c-ccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccccc
Q 012525 348 HVNVPFVI---ADATTL---TQ--AGYV-----G-EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (461)
Q Consensus 348 ~l~~pfv~---i~~s~l---~~--~g~v-----G-e~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~ 413 (461)
.+.+.-.. -.|... .. ..++ + .. ...++.+..............|+||||+|.|...
T Consensus 63 ~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~-vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------- 133 (725)
T PRK07133 63 ALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNG-VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------- 133 (725)
T ss_pred HhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCC-HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH--------
Confidence 88653110 001000 00 0000 0 11 2335555555444434457789999999999877
Q ss_pred ccchHHHHHHHHHHHhC
Q 012525 414 DVSGEGVQQALLKMLEG 430 (461)
Q Consensus 414 ~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.||+
T Consensus 134 ------A~NALLKtLEE 144 (725)
T PRK07133 134 ------AFNALLKTLEE 144 (725)
T ss_pred ------HHHHHHHHhhc
Confidence 89999999995
No 156
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=4.4e-09 Score=114.90 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=74.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|...+... ..++.+||+||+|+|||++|++||+.
T Consensus 13 ~~f~d-iiGqe~iv~~L~~~i~~~------------------------------~i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 13 RDFNS-LEGQDFVVETLKHSIESN------------------------------KIANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred CCHHH-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34565 899999999988888310 01245899999999999999999998
Q ss_pred cCCc-------eEEe-cchhhhhc---C---cccc--cHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc
Q 012525 349 VNVP-------FVIA-DATTLTQA---G---YVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 349 l~~p-------fv~i-~~s~l~~~---g---~vGe--~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
+.+. +-.+ +|-.+... + +-|. .....++.+...........+..|+||||+|.|...
T Consensus 62 L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~------- 134 (563)
T PRK06647 62 LNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS------- 134 (563)
T ss_pred hccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-------
Confidence 8642 1100 01111100 0 0010 002333444433333333456779999999999877
Q ss_pred cccchHHHHHHHHHHHhC
Q 012525 413 RDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.||.
T Consensus 135 -------a~naLLK~LEe 145 (563)
T PRK06647 135 -------AFNALLKTIEE 145 (563)
T ss_pred -------HHHHHHHhhcc
Confidence 89999999994
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.95 E-value=2e-09 Score=122.67 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=85.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+. |+|++...+.+...+.. ....|+||+||||||||++|+.||+.
T Consensus 184 ~~ld~-~iGr~~ei~~~i~~l~r-------------------------------~~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 184 GKIDP-VLGRDDEIRQMIDILLR-------------------------------RRQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCCCc-ccCCHHHHHHHHHHHhc-------------------------------CCcCceeEECCCCCCHHHHHHHHHHH
Confidence 34555 89999987777665521 12368999999999999999999987
Q ss_pred cC----------CceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccch
Q 012525 349 VN----------VPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (461)
Q Consensus 349 l~----------~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~ 417 (461)
+. ..++.++...+.. ..+.|+. +..++.++...... ..+.||||||||.+...++.. .+.+
T Consensus 232 i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~~-~~~d--- 303 (852)
T TIGR03345 232 IAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQA-GQGD--- 303 (852)
T ss_pred HhhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCcc-cccc---
Confidence 62 3567777776653 3455554 78888888766421 257899999999998764321 1122
Q ss_pred HHHHHHHHHHHhCceee
Q 012525 418 EGVQQALLKMLEGTETK 434 (461)
Q Consensus 418 ~~v~~aLL~~LEg~~v~ 434 (461)
+-+.|+..|+.+.+.
T Consensus 304 --~~n~Lkp~l~~G~l~ 318 (852)
T TIGR03345 304 --AANLLKPALARGELR 318 (852)
T ss_pred --HHHHhhHHhhCCCeE
Confidence 446788888855443
No 158
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=5.9e-09 Score=112.10 Aligned_cols=115 Identities=27% Similarity=0.361 Sum_probs=72.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+||+.+++.|..++... ...+.+||+||+|+|||++|+.+|+.+
T Consensus 14 ~f~d-iiGq~~i~~~L~~~i~~~------------------------------~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 14 FFKE-VIGQEIVVRILKNAVKLQ------------------------------RVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred cHHH-ccChHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555 899999999998888310 002347899999999999999999988
Q ss_pred CC-------ceEE-ecchhhhhc---Ccc------cccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc
Q 012525 350 NV-------PFVI-ADATTLTQA---GYV------GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 350 ~~-------pfv~-i~~s~l~~~---g~v------Ge~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
++ |+-. .+|..+... +++ ... ...++.+..........+...|+||||+|.|...
T Consensus 63 ~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~g-vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~------- 134 (486)
T PRK14953 63 NCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRG-IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE------- 134 (486)
T ss_pred cCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCC-HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-------
Confidence 64 1100 111111100 000 001 1223344333333333456779999999999877
Q ss_pred cccchHHHHHHHHHHHhC
Q 012525 413 RDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg 430 (461)
.+++||+.|+.
T Consensus 135 -------a~naLLk~LEe 145 (486)
T PRK14953 135 -------AFNALLKTLEE 145 (486)
T ss_pred -------HHHHHHHHHhc
Confidence 78999999995
No 159
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.94 E-value=2.4e-09 Score=121.12 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=96.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHH
Q 012525 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 267 l~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
+...+...|+|++.+|+.|...+. ....+... ....++.. +...--....||||.|+||||||++|+.++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~-------gG~~k~~~-~~~~~dg~--~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih 513 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLF-------SGNKNSSD-FNKSPDAC--YKVDNFRGIINVLLCGDPGTAKSQLLHYTH 513 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHh-------cCCccccc-cccccccc--cccccccCCceEEEeCCCCccHHHHHHHHH
Confidence 455556668999999988866652 11100000 00000000 000011334699999999999999999999
Q ss_pred HhcC-------CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 347 RHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 347 ~~l~-------~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
+... .++..+.++.... +... ....+....+.+..+.+|+++|||+++|...
T Consensus 514 ~lspR~~ytsG~~~s~vgLTa~~~--~~d~-----~tG~~~le~GaLvlAdgGtL~IDEidkms~~-------------- 572 (915)
T PTZ00111 514 LLSPRSIYTSGKSSSSVGLTASIK--FNES-----DNGRAMIQPGAVVLANGGVCCIDELDKCHNE-------------- 572 (915)
T ss_pred HhCCccccCCCCCCccccccchhh--hccc-----ccCcccccCCcEEEcCCCeEEecchhhCCHH--------------
Confidence 8653 2444444332211 0000 0011122234566788999999999999988
Q ss_pred HHHHHHHHHhCceeeeecc--eeeecCCeEEEecCCCC
Q 012525 420 VQQALLKMLEGTETKTFAA--VSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 420 v~~aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsNid 455 (461)
.|.+|+++||...+.+.-. ....+.++.+|+|+|.-
T Consensus 573 ~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~ 610 (915)
T PTZ00111 573 SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPI 610 (915)
T ss_pred HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCc
Confidence 8999999999887765432 45556689999999974
No 160
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=6.5e-09 Score=112.73 Aligned_cols=109 Identities=35% Similarity=0.421 Sum_probs=74.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|..++... ..++.+||+||+|+|||++|+++|+.
T Consensus 11 ~~fde-iiGqe~v~~~L~~~I~~g------------------------------rl~hayLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 11 KHFDE-LIGQESVSKTLSLALDNN------------------------------RLAHAYLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred CCHHH-ccCcHHHHHHHHHHHHcC------------------------------CCCeeEEEECCCCCcHHHHHHHHHHH
Confidence 45666 899999999998888310 01244699999999999999999998
Q ss_pred cCC------------------------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 349 VNV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 349 l~~------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+.. .++.++...- . . -..++.+..........+...|+||||+|.|..
T Consensus 60 L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~-----~--g-Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~ 131 (535)
T PRK08451 60 LVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN-----R--G-IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK 131 (535)
T ss_pred hcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc-----c--C-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 743 1222222110 0 1 233444443322222234667999999999998
Q ss_pred hhhccccccccchHHHHHHHHHHHhC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. .+++||+.||.
T Consensus 132 ~--------------A~NALLK~LEE 143 (535)
T PRK08451 132 E--------------AFNALLKTLEE 143 (535)
T ss_pred H--------------HHHHHHHHHhh
Confidence 8 89999999995
No 161
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=7.4e-09 Score=106.70 Aligned_cols=114 Identities=29% Similarity=0.373 Sum_probs=74.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|...+.. + ..+.++||+||+|+|||++|+++|+.
T Consensus 14 ~~~~~-iig~~~~~~~l~~~i~~------------~------------------~~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 14 QTFDD-VVGQSHITNTLLNAIEN------------N------------------HLAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred CcHHh-cCCcHHHHHHHHHHHHc------------C------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666 79999999988887731 0 11367999999999999999999998
Q ss_pred cCCceEEecc-------hhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHH
Q 012525 349 VNVPFVIADA-------TTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (461)
Q Consensus 349 l~~pfv~i~~-------s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~ 421 (461)
+..+...... .++.... ... ...++.++..+.......+..||||||+|.+... .+
T Consensus 63 l~~~~~~~~~~~~~~~~~~l~~~~--~~~-~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~ 125 (367)
T PRK14970 63 INQPGYDDPNEDFSFNIFELDAAS--NNS-VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AF 125 (367)
T ss_pred hcCCCCCCCCCCCCcceEEecccc--CCC-HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HH
Confidence 8652211100 0111000 011 2445555554332222346679999999988876 68
Q ss_pred HHHHHHHhC
Q 012525 422 QALLKMLEG 430 (461)
Q Consensus 422 ~aLL~~LEg 430 (461)
+.|++.|++
T Consensus 126 ~~ll~~le~ 134 (367)
T PRK14970 126 NAFLKTLEE 134 (367)
T ss_pred HHHHHHHhC
Confidence 899999985
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.90 E-value=4.9e-09 Score=119.62 Aligned_cols=121 Identities=26% Similarity=0.352 Sum_probs=83.2
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.++. |+|++...+.+...+.. ....+++|+||||||||++|++||+.+
T Consensus 171 ~~~~-~igr~~ei~~~~~~l~r-------------------------------~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 171 KLDP-VIGRDEEIRRTIQVLSR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCc-CCCcHHHHHHHHHHHhc-------------------------------CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4454 89999987777776631 123789999999999999999999875
Q ss_pred ----------CCceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchH
Q 012525 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (461)
Q Consensus 350 ----------~~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~ 418 (461)
+.+++.++...+.. ..|.|+. +..+..++...... ..+.||||||||.|....... +..
T Consensus 219 ~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~~---~~~~ILfIDEih~l~~~g~~~------~~~ 288 (852)
T TIGR03346 219 VNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTKS---EGQIILFIDELHTLVGAGKAE------GAM 288 (852)
T ss_pred hccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHhc---CCCeEEEeccHHHhhcCCCCc------chh
Confidence 56788888776642 2455544 77778887755321 257899999999998642211 111
Q ss_pred HHHHHHHHHHhCce
Q 012525 419 GVQQALLKMLEGTE 432 (461)
Q Consensus 419 ~v~~aLL~~LEg~~ 432 (461)
.+.+.|..+|+.+.
T Consensus 289 d~~~~Lk~~l~~g~ 302 (852)
T TIGR03346 289 DAGNMLKPALARGE 302 (852)
T ss_pred HHHHHhchhhhcCc
Confidence 25666766666443
No 163
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.90 E-value=2.8e-09 Score=109.35 Aligned_cols=130 Identities=25% Similarity=0.387 Sum_probs=99.5
Q ss_pred CCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhh-
Q 012525 307 AEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQA- 382 (461)
Q Consensus 307 ~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a- 382 (461)
.|..|+.++....+++....++||.|++||||.++||+.+... ..||+.++|+.+-+. ..| .++|..+
T Consensus 209 ~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~-----~aE---sElFG~ap 280 (511)
T COG3283 209 VSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED-----AAE---SELFGHAP 280 (511)
T ss_pred ccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh-----HhH---HHHhcCCC
Confidence 3455556666666677778899999999999999999998755 569999999987652 122 2334332
Q ss_pred -----chhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 383 -----EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 383 -----~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
.+.++.+++|.+|+|||..|++. +|..||++|..+.++.....+.+-.|..+|+||.....
T Consensus 281 g~~gk~GffE~AngGTVlLDeIgEmSp~--------------lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~ 346 (511)
T COG3283 281 GDEGKKGFFEQANGGTVLLDEIGEMSPR--------------LQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLV 346 (511)
T ss_pred CCCCccchhhhccCCeEEeehhhhcCHH--------------HHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHH
Confidence 24466788999999999999999 99999999998888776665555558999999877654
Q ss_pred c
Q 012525 458 T 458 (461)
Q Consensus 458 ~ 458 (461)
+
T Consensus 347 ~ 347 (511)
T COG3283 347 E 347 (511)
T ss_pred H
Confidence 3
No 164
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.90 E-value=6.4e-09 Score=114.03 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=91.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC--ceEEecchhhhhcCcccccHHHHHHHHHH-hhchhhhccCceEEEEcCcccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGEDVESILYKLLA-QAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~--pfv~i~~s~l~~~g~vGe~~e~~L~~lf~-~a~~~v~~a~~gVLfIDEID~L 402 (461)
.+|||.|+.||+||+++++|+..+.. ||+.+..+.-...-+.|-+++..|..--. ...+.+..++++||||||++.+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 67999999999999999999999854 88877776544432233455555544332 4566778899999999999999
Q ss_pred chhhhccccccccchHHHHHHHHHHHhCceeeeecc--eeeecCCeEEEecCCC
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA--VSKVSRDNLYIKTSGL 454 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsNi 454 (461)
.++ ++++|++.||.++++|... ...++.+|++|+|.|.
T Consensus 106 ~~~--------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~ 145 (584)
T PRK13406 106 EPG--------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEG 145 (584)
T ss_pred CHH--------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCC
Confidence 998 9999999999998888444 7788889999999654
No 165
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.89 E-value=5.8e-09 Score=114.98 Aligned_cols=56 Identities=29% Similarity=0.469 Sum_probs=44.1
Q ss_pred hhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc----------eeeecCCeEEEecCCCC
Q 012525 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA----------VSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 386 v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~----------~r~~~rd~IiI~TsNid 455 (461)
++.+++|+|||||++.|... .|..|++.|+..++.+... ....+.++.+|+++|.+
T Consensus 213 L~~AngGtL~Ldei~~L~~~--------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~ 278 (608)
T TIGR00764 213 IHRAHKGVLYIDEIKTMPLE--------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD 278 (608)
T ss_pred eEECCCCEEEEEChHhCCHH--------------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH
Confidence 44677899999999999987 8999999999887766432 12334589999999976
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.89 E-value=4.3e-09 Score=118.45 Aligned_cols=120 Identities=26% Similarity=0.379 Sum_probs=80.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l- 349 (461)
++. ++|.+...+.+...+.. ..+.++||+||||||||++|+.+|..+
T Consensus 185 ~~~-liGR~~ei~~~i~iL~r-------------------------------~~~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 185 IDP-LIGREKELERAIQVLCR-------------------------------RRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCc-CcCCCHHHHHHHHHHhc-------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 444 88999888888877731 123789999999999999999999764
Q ss_pred ---------CCceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 350 ---------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 350 ---------~~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
+..++.++...+.. ..|.|+. +..++.++.... ...++||||||||.|...+...+ ....
T Consensus 233 ~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l~----~~~~~ILfIDEIh~L~g~g~~~~-----g~~d 302 (758)
T PRK11034 233 QGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAASG-----GQVD 302 (758)
T ss_pred hcCCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHHH----hcCCCEEEeccHHHHhccCCCCC-----cHHH
Confidence 34555666555442 2345544 677777776543 23678999999999987632111 1222
Q ss_pred HHHHHHHHHhCce
Q 012525 420 VQQALLKMLEGTE 432 (461)
Q Consensus 420 v~~aLL~~LEg~~ 432 (461)
+.+.|..+|+.+.
T Consensus 303 ~~nlLkp~L~~g~ 315 (758)
T PRK11034 303 AANLIKPLLSSGK 315 (758)
T ss_pred HHHHHHHHHhCCC
Confidence 5666777776443
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.89 E-value=9.1e-09 Score=86.93 Aligned_cols=77 Identities=29% Similarity=0.411 Sum_probs=53.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc---eEEecchhhhhc------------CcccccHHHHHHHHHHhhchhhhcc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQA------------GYVGEDVESILYKLLAQAEFNVEAA 389 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p---fv~i~~s~l~~~------------g~vGe~~e~~L~~lf~~a~~~v~~a 389 (461)
..+++|+||||||||++++.||..+... ++.+++...... ..........+..++..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL---- 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc----
Confidence 3679999999999999999999999775 777777654321 011112234444555444432
Q ss_pred CceEEEEcCccccchh
Q 012525 390 QQGMVYIDEVDKITKK 405 (461)
Q Consensus 390 ~~gVLfIDEID~L~~~ 405 (461)
...||||||++.+...
T Consensus 78 ~~~viiiDei~~~~~~ 93 (148)
T smart00382 78 KPDVLILDEITSLLDA 93 (148)
T ss_pred CCCEEEEECCcccCCH
Confidence 3589999999998887
No 168
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.88 E-value=2e-08 Score=100.18 Aligned_cols=113 Identities=28% Similarity=0.390 Sum_probs=71.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHH
Q 012525 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (461)
Q Consensus 266 el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraL 345 (461)
.-.+.|++ ++|++++++.|...+.. ....+++|+||+|||||++|+++
T Consensus 11 yrP~~~~~-~~g~~~~~~~l~~~i~~-------------------------------~~~~~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 11 YRPRTLDE-IVGQEEIVERLKSYVKE-------------------------------KNMPHLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred hCCCcHHH-hcCcHHHHHHHHHHHhC-------------------------------CCCCeEEEECCCCCCHHHHHHHH
Confidence 33356676 68999999988877720 01246999999999999999999
Q ss_pred HHhcCC-----ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHH
Q 012525 346 ARHVNV-----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 346 A~~l~~-----pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
++.+.. .++.+++++.... ......+....... .+......+|+|||+|.+... .
T Consensus 59 ~~~l~~~~~~~~~i~~~~~~~~~~----~~~~~~i~~~~~~~--~~~~~~~~vviiDe~~~l~~~--------------~ 118 (319)
T PRK00440 59 ARELYGEDWRENFLELNASDERGI----DVIRNKIKEFARTA--PVGGAPFKIIFLDEADNLTSD--------------A 118 (319)
T ss_pred HHHHcCCccccceEEeccccccch----HHHHHHHHHHHhcC--CCCCCCceEEEEeCcccCCHH--------------H
Confidence 998733 3444444332210 00111122211111 111134669999999999776 6
Q ss_pred HHHHHHHHhC
Q 012525 421 QQALLKMLEG 430 (461)
Q Consensus 421 ~~aLL~~LEg 430 (461)
++.|+.+|+.
T Consensus 119 ~~~L~~~le~ 128 (319)
T PRK00440 119 QQALRRTMEM 128 (319)
T ss_pred HHHHHHHHhc
Confidence 7889988874
No 169
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.6e-08 Score=111.56 Aligned_cols=109 Identities=27% Similarity=0.364 Sum_probs=75.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++ |+||+.+++.|...+... ..++.+||+||+|+|||++|+++|+.
T Consensus 14 ~~f~~-viGq~~~~~~L~~~i~~~------------------------------~l~hayLf~Gp~G~GKtt~A~~lAk~ 62 (614)
T PRK14971 14 STFES-VVGQEALTTTLKNAIATN------------------------------KLAHAYLFCGPRGVGKTTCARIFAKT 62 (614)
T ss_pred CCHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 34566 899999999998887310 01244899999999999999999998
Q ss_pred cCCc-------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 349 VNVP-------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 349 l~~p-------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
+.+. ++.+++... .. ...++.+...+......+...|+||||+|.|.
T Consensus 63 l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~-------~~-vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls 134 (614)
T PRK14971 63 INCQNLTADGEACNECESCVAFNEQRSYNIHELDAASN-------NS-VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS 134 (614)
T ss_pred hCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccccc-------CC-HHHHHHHHHHHhhCcccCCcEEEEEECcccCC
Confidence 8632 222222110 01 23445555444333334567799999999998
Q ss_pred hhhhccccccccchHHHHHHHHHHHhC
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.. .+++||+.||.
T Consensus 135 ~~--------------a~naLLK~LEe 147 (614)
T PRK14971 135 QA--------------AFNAFLKTLEE 147 (614)
T ss_pred HH--------------HHHHHHHHHhC
Confidence 87 89999999994
No 170
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.86 E-value=1.7e-08 Score=101.60 Aligned_cols=152 Identities=23% Similarity=0.288 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHH
Q 012525 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (461)
Q Consensus 262 ~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtL 341 (461)
.....+++.|+..++||.-+++.+..++..++..- .+ ..+-.+-|+|++||||..+
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-------------~p-----------~KPLvLSfHG~tGTGKN~V 126 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWANP-------------NP-----------RKPLVLSFHGWTGTGKNYV 126 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC-------------CC-----------CCCeEEEecCCCCCchhHH
Confidence 34567999999999999999999999997654321 01 1123355999999999999
Q ss_pred HHHHHHhcC-----CceEEecchhhhhcCcccc-cHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccccccc
Q 012525 342 AKTLARHVN-----VPFVIADATTLTQAGYVGE-DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (461)
Q Consensus 342 AraLA~~l~-----~pfv~i~~s~l~~~g~vGe-~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~ 415 (461)
++.||+.+- .+||..-.+... +.-. .++..-.++-.+....+..++.+++++||+|+|.+.
T Consensus 127 a~iiA~n~~~~Gl~S~~V~~fvat~h---FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g---------- 193 (344)
T KOG2170|consen 127 AEIIAENLYRGGLRSPFVHHFVATLH---FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG---------- 193 (344)
T ss_pred HHHHHHHHHhccccchhHHHhhhhcc---CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh----------
Confidence 999999773 244322222111 1111 123333344455566677889999999999999998
Q ss_pred chHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 416 SGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 416 s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
++++|-..||-..... ....+..|+|..+|.+-.+
T Consensus 194 ----Lld~lkpfLdyyp~v~----gv~frkaIFIfLSN~gg~e 228 (344)
T KOG2170|consen 194 ----LLDVLKPFLDYYPQVS----GVDFRKAIFIFLSNAGGSE 228 (344)
T ss_pred ----HHHHHhhhhccccccc----cccccceEEEEEcCCcchH
Confidence 8899988888322111 1122368999999987544
No 171
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.84 E-value=1.2e-09 Score=118.34 Aligned_cols=137 Identities=22% Similarity=0.335 Sum_probs=104.0
Q ss_pred CCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc--CCceEEecchhhhhc----CcccccHHHHHHHHH
Q 012525 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--NVPFVIADATTLTQA----GYVGEDVESILYKLL 379 (461)
Q Consensus 306 ~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l--~~pfv~i~~s~l~~~----g~vGe~~e~~L~~lf 379 (461)
..+.......+....+.....+|||.|+|||||..+||+|++.. ..||+.++|..+.+. .++|.. ...+...+
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~-~GafTga~ 395 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYV-AGAFTGAR 395 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccC-ccccccch
Confidence 34455666666777788888999999999999999999999765 459999999876643 122222 11111111
Q ss_pred -HhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 380 -AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 380 -~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
....+.++.++++.+|+|||..|... +|..||++|+++++.-....+ .+.|+.+|++|+-|.+.
T Consensus 396 ~kG~~g~~~~A~gGtlFldeIgd~p~~--------------~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~ 460 (606)
T COG3284 396 RKGYKGKLEQADGGTLFLDEIGDMPLA--------------LQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQ 460 (606)
T ss_pred hccccccceecCCCccHHHHhhhchHH--------------HHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHH
Confidence 22345577789999999999999988 999999999999888766666 67799999999988754
No 172
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.81 E-value=1e-08 Score=108.17 Aligned_cols=133 Identities=23% Similarity=0.373 Sum_probs=94.8
Q ss_pred CCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHH------
Q 012525 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILY------ 376 (461)
Q Consensus 306 ~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~------ 376 (461)
+.++.+..+.+....+.....++++.|++||||+++|+++++.. ..+|+.++|..+.+. ..+..+.
T Consensus 138 g~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~-----~~~~~lfg~~~~~ 212 (463)
T TIGR01818 138 GEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKD-----LIESELFGHEKGA 212 (463)
T ss_pred ecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH-----HHHHHhcCCCCCC
Confidence 34456666666666667777889999999999999999999875 469999999877531 1111110
Q ss_pred --HHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 377 --KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 377 --~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
.......+.+..+.+++||||||+.|... +|..|+++|+.+.+...........+..+|+|++.
T Consensus 213 ~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 213 FTGANTRRQGRFEQADGGTLFLDEIGDMPLD--------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred CCCcccCCCCcEEECCCCeEEEEchhhCCHH--------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCC
Confidence 00111223355678899999999999998 89999999997776554443333347789999988
Q ss_pred CcC
Q 012525 455 DSK 457 (461)
Q Consensus 455 d~e 457 (461)
+.+
T Consensus 279 ~l~ 281 (463)
T TIGR01818 279 NLE 281 (463)
T ss_pred CHH
Confidence 754
No 173
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.81 E-value=1.7e-08 Score=105.51 Aligned_cols=130 Identities=22% Similarity=0.364 Sum_probs=96.3
Q ss_pred CCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHh-
Q 012525 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ- 381 (461)
Q Consensus 306 ~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~- 381 (461)
+.+..+....+.+..++.....++++|++||||+++|++++... ..+|+.++|..+... ..-..+|..
T Consensus 143 g~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~--------~~~~~lfg~~ 214 (441)
T PRK10365 143 GKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES--------LLESELFGHE 214 (441)
T ss_pred ecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH--------HHHHHhcCCC
Confidence 34556666666677777788999999999999999999999765 469999999976531 111112221
Q ss_pred ----------hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEec
Q 012525 382 ----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKT 451 (461)
Q Consensus 382 ----------a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~T 451 (461)
..+.+..+.+|+||||||+.|... +|..|+..|+...+...........++.+|+|
T Consensus 215 ~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (441)
T PRK10365 215 KGAFTGADKRREGRFVEADGGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAA 280 (441)
T ss_pred CCCcCCCCcCCCCceeECCCCEEEEeccccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEe
Confidence 123355678999999999999998 89999999998776655554444557889988
Q ss_pred CCCCcC
Q 012525 452 SGLDSK 457 (461)
Q Consensus 452 sNid~e 457 (461)
++.++.
T Consensus 281 t~~~~~ 286 (441)
T PRK10365 281 THRDLA 286 (441)
T ss_pred CCCCHH
Confidence 887753
No 174
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.81 E-value=6e-08 Score=89.64 Aligned_cols=106 Identities=28% Similarity=0.407 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCc----
Q 012525 277 GQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP---- 352 (461)
Q Consensus 277 Gqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~p---- 352 (461)
||+++++.|...+... ..+..+||+||.|+||+++|+++|+.+...
T Consensus 1 gq~~~~~~L~~~~~~~------------------------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~ 50 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------------------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNE 50 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------------------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT
T ss_pred CcHHHHHHHHHHHHcC------------------------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 7888888888877310 113558999999999999999999977431
Q ss_pred -------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccccc
Q 012525 353 -------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (461)
Q Consensus 353 -------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~ 413 (461)
++.+....... .-. .+.++.+.............-|++|||+|+|...
T Consensus 51 ~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~----~i~-i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-------- 117 (162)
T PF13177_consen 51 DPCGECRSCRRIEEGNHPDFIIIKPDKKKK----SIK-IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-------- 117 (162)
T ss_dssp T--SSSHHHHHHHTT-CTTEEEEETTTSSS----SBS-HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH--------
T ss_pred CCCCCCHHHHHHHhccCcceEEEecccccc----hhh-HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH--------
Confidence 22221111100 012 3455566665554444457789999999999999
Q ss_pred ccchHHHHHHHHHHHhCc
Q 012525 414 DVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 414 ~~s~~~v~~aLL~~LEg~ 431 (461)
.+++||+.||+-
T Consensus 118 ------a~NaLLK~LEep 129 (162)
T PF13177_consen 118 ------AQNALLKTLEEP 129 (162)
T ss_dssp ------HHHHHHHHHHST
T ss_pred ------HHHHHHHHhcCC
Confidence 999999999954
No 175
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=4.7e-08 Score=101.70 Aligned_cols=112 Identities=24% Similarity=0.291 Sum_probs=73.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|+||+.+++.|..++... ..++.+||+||+|+||+++|.++|+.+.+.--
T Consensus 21 iiGq~~~~~~L~~~~~~~------------------------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~ 70 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSG------------------------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPP 70 (365)
T ss_pred ccChHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCC
Confidence 899999999999888310 11245999999999999999999997743100
Q ss_pred ---------------Eecc---hhhhh---cCc--c-------c-----ccHHHHHHHHHHhhchhhhccCceEEEEcCc
Q 012525 355 ---------------IADA---TTLTQ---AGY--V-------G-----EDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (461)
Q Consensus 355 ---------------~i~~---s~l~~---~g~--v-------G-----e~~e~~L~~lf~~a~~~v~~a~~gVLfIDEI 399 (461)
.-.| ..+.. .++ + + .-..+.++.+............+.||+|||+
T Consensus 71 ~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDea 150 (365)
T PRK07471 71 PGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTA 150 (365)
T ss_pred CCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEech
Confidence 0000 00000 000 0 0 0012345555555444444556779999999
Q ss_pred cccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 400 D~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
|.|... .+++||+.||+
T Consensus 151 d~m~~~--------------aanaLLK~LEe 167 (365)
T PRK07471 151 DEMNAN--------------AANALLKVLEE 167 (365)
T ss_pred HhcCHH--------------HHHHHHHHHhc
Confidence 999988 89999999995
No 176
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=5.1e-08 Score=98.70 Aligned_cols=109 Identities=19% Similarity=0.309 Sum_probs=73.6
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|++ |+||+.+++.|...+.. + .-++.+||+||.|+|||++|+++|+.+.
T Consensus 3 ~~~-i~g~~~~~~~l~~~~~~------------~------------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 3 FHT-IIGHENIKNRIKNSIIK------------N------------------RFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred hhh-ccCcHHHHHHHHHHHHc------------C------------------CCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 455 89999999998887731 0 1124579999999999999999999774
Q ss_pred C--------ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHH
Q 012525 351 V--------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (461)
Q Consensus 351 ~--------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~ 422 (461)
+ .+..+...+ .... . ...++.+...........+..|++|||+|+|... .+|
T Consensus 52 c~~~~~~h~D~~~~~~~~---~~~i--~-v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~n 111 (313)
T PRK05564 52 GKSQQREYVDIIEFKPIN---KKSI--G-VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQN 111 (313)
T ss_pred CCCCCCCCCCeEEecccc---CCCC--C-HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHH
Confidence 3 222222210 0001 1 2335555543333333456779999999999988 899
Q ss_pred HHHHHHhC
Q 012525 423 ALLKMLEG 430 (461)
Q Consensus 423 aLL~~LEg 430 (461)
+||+.||+
T Consensus 112 aLLK~LEe 119 (313)
T PRK05564 112 AFLKTIEE 119 (313)
T ss_pred HHHHHhcC
Confidence 99999995
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.78 E-value=3.2e-08 Score=105.13 Aligned_cols=118 Identities=25% Similarity=0.362 Sum_probs=70.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC--c-----eEEecch----hhhhcCc----ccccH-HHHHHHHHHhhchhhhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV--P-----FVIADAT----TLTQAGY----VGEDV-ESILYKLLAQAEFNVEA 388 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~--p-----fv~i~~s----~l~~~g~----vGe~~-e~~L~~lf~~a~~~v~~ 388 (461)
..+++|+||||||||++|+.||+.+.. . ++.+... ++.. ++ +|... ...+.++...+... .
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~-G~rP~~vgy~~~~G~f~~~~~~A~~~--p 270 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ-GYRPNGVGFRRKDGIFYNFCQQAKEQ--P 270 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc-ccCCCCCCeEecCchHHHHHHHHHhc--c
Confidence 478999999999999999999998743 1 2222211 1110 11 11110 11233333333321 1
Q ss_pred cCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCce----eeee----c---ceeeecCCeEEEecCCCCcC
Q 012525 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTE----TKTF----A---AVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 389 a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~----v~i~----~---~~r~~~rd~IiI~TsNid~e 457 (461)
.++.|||||||++....+ +...|+.+||... ..++ . .....+.++.+|+|+|....
T Consensus 271 ~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr 337 (459)
T PRK11331 271 EKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADR 337 (459)
T ss_pred cCCcEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCcccc
Confidence 256899999999877552 6778888888321 1111 1 12355669999999998764
Q ss_pred c
Q 012525 458 T 458 (461)
Q Consensus 458 ~ 458 (461)
.
T Consensus 338 s 338 (459)
T PRK11331 338 S 338 (459)
T ss_pred c
Confidence 4
No 178
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.78 E-value=1.2e-08 Score=112.71 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=44.7
Q ss_pred hhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc----------eeeecCCeEEEecCCCC
Q 012525 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA----------VSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 386 v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~----------~r~~~rd~IiI~TsNid 455 (461)
++.+++|+|||||++.|.+. +|..|++.|+.+++.+... ....+.++.+|+++|.+
T Consensus 222 L~kAnGGtL~LDei~~L~~~--------------~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ 287 (637)
T PRK13765 222 IHKAHKGVLFIDEINTLDLE--------------SQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD 287 (637)
T ss_pred eeECCCcEEEEeChHhCCHH--------------HHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC
Confidence 45678899999999999777 8999999999887766432 23344588999999987
Q ss_pred c
Q 012525 456 S 456 (461)
Q Consensus 456 ~ 456 (461)
.
T Consensus 288 l 288 (637)
T PRK13765 288 A 288 (637)
T ss_pred H
Confidence 4
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.78 E-value=6.4e-08 Score=106.44 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=64.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
..+-+||+||||.||||||+.+|+++|..++++++++-... ..+...+..+...-...-...+|..|+|||||-..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 34667899999999999999999999999999999987753 23333333333322211122577889999999766
Q ss_pred hhhhccccccccchHHHHHHHHHHHh
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
.. +++.||.++.
T Consensus 401 ~~--------------~Vdvilslv~ 412 (877)
T KOG1969|consen 401 RA--------------AVDVILSLVK 412 (877)
T ss_pred HH--------------HHHHHHHHHH
Confidence 54 7888888887
No 180
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=4.7e-08 Score=93.07 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=47.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
..+++|+||+|||||++|+++++.+ +.+++.+++..+... . ...+... ....+|||||++.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~-~---------~~~~~~~------~~~~lLvIDdi~~ 101 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA-D---------PEVLEGL------EQADLVCLDDVEA 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh-H---------HHHHhhc------ccCCEEEEeChhh
Confidence 3679999999999999999999876 457888888877631 0 1112111 1345999999998
Q ss_pred cchh
Q 012525 402 ITKK 405 (461)
Q Consensus 402 L~~~ 405 (461)
+...
T Consensus 102 l~~~ 105 (226)
T TIGR03420 102 IAGQ 105 (226)
T ss_pred hcCC
Confidence 8764
No 181
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1e-07 Score=97.31 Aligned_cols=115 Identities=22% Similarity=0.268 Sum_probs=74.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|++ |+||+.+++.|..++... ..++.+||+||.|+||+++|+++|+.+.
T Consensus 3 f~~-iiGq~~~~~~L~~~i~~~------------------------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 3 FAN-LIGQPLAIELLTAAIKQN------------------------------RIAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred HHH-hCCHHHHHHHHHHHHHhC------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 344 899999999999988310 1136799999999999999999999774
Q ss_pred Cc------------------eEEecchhhhhcC--------ccc-------ccHHHHHHHHHHhhchhhhccCceEEEEc
Q 012525 351 VP------------------FVIADATTLTQAG--------YVG-------EDVESILYKLLAQAEFNVEAAQQGMVYID 397 (461)
Q Consensus 351 ~p------------------fv~i~~s~l~~~g--------~vG-------e~~e~~L~~lf~~a~~~v~~a~~gVLfID 397 (461)
+. ++.+......... ..| .--...++.+..........+...|++||
T Consensus 52 c~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~ 131 (314)
T PRK07399 52 SQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIE 131 (314)
T ss_pred CCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEE
Confidence 31 1222211000000 000 00012344554444433334567899999
Q ss_pred CccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 398 EID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
++|+|... ..|+||+.||+
T Consensus 132 ~ae~m~~~--------------aaNaLLK~LEE 150 (314)
T PRK07399 132 DAETMNEA--------------AANALLKTLEE 150 (314)
T ss_pred chhhcCHH--------------HHHHHHHHHhC
Confidence 99999988 89999999995
No 182
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.72 E-value=6.7e-08 Score=90.34 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=56.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQ 381 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~ 381 (461)
..+||+||+|+|||++|+.+++.+... |..+.... ... . .+.++.+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~--~-~~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSI--K-VDQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcC--C-HHHHHHHHHH
Confidence 569999999999999999999987432 11111110 001 1 2344444444
Q ss_pred hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 382 a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
...........||||||+|.|... .++.||+.||.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~ 122 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE 122 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC
Confidence 433333356779999999999987 78999999984
No 183
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.6e-07 Score=97.31 Aligned_cols=111 Identities=26% Similarity=0.364 Sum_probs=70.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC---
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~--- 351 (461)
|+||+.+++.|..++.. + ..+..+||+||+|+|||++|+.+|+.+.+
T Consensus 25 l~Gh~~a~~~L~~a~~~------------g------------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~ 74 (351)
T PRK09112 25 LFGHEEAEAFLAQAYRE------------G------------------KLHHALLFEGPEGIGKATLAFHLANHILSHPD 74 (351)
T ss_pred ccCcHHHHHHHHHHHHc------------C------------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCc
Confidence 89999999999988831 0 11245999999999999999999998854
Q ss_pred ----ceEEe----cch---hhhhc---Cc--c-------------cccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 352 ----PFVIA----DAT---TLTQA---GY--V-------------GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 352 ----pfv~i----~~s---~l~~~---g~--v-------------Ge~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
+.... .|. .+... ++ + .-. .+.++.+..............||||||+|.|
T Consensus 75 ~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~-vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l 153 (351)
T PRK09112 75 PAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAIT-VDEIRRVGHFLSQTSGDGNWRIVIIDPADDM 153 (351)
T ss_pred cccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCC-HHHHHHHHHHhhhccccCCceEEEEEchhhc
Confidence 11100 110 11000 00 0 001 1233333332222222345669999999999
Q ss_pred chhhhccccccccchHHHHHHHHHHHhC
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
... .+++||+.||+
T Consensus 154 ~~~--------------aanaLLk~LEE 167 (351)
T PRK09112 154 NRN--------------AANAILKTLEE 167 (351)
T ss_pred CHH--------------HHHHHHHHHhc
Confidence 988 89999999995
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.2e-07 Score=97.13 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=70.0
Q ss_pred HHhhcCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 271 LDKFVIG-QEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 271 Ld~~VvG-qd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
++. |+| |+.+++.|...+.. + ..++.+||+||+|+||+++|+++|+.+
T Consensus 4 ~~~-i~~~q~~~~~~L~~~~~~------------~------------------~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 4 WEQ-LTALQPVVVKMLQNSIAK------------N------------------RLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHH-HHhhHHHHHHHHHHHHHc------------C------------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344 666 99999988887731 0 112457999999999999999999987
Q ss_pred CCce--EE------ecch--------hhhhcCccccc-HHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc
Q 012525 350 NVPF--VI------ADAT--------TLTQAGYVGED-VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 350 ~~pf--v~------i~~s--------~l~~~g~vGe~-~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
.+.- -. -+|. ++.-....+.. ....++.+..........+...|+||||+|+|...
T Consensus 53 ~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~------- 125 (329)
T PRK08058 53 FCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS------- 125 (329)
T ss_pred CCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-------
Confidence 4321 00 0000 00000000110 01334444433322222345679999999999988
Q ss_pred cccchHHHHHHHHHHHhC
Q 012525 413 RDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg 430 (461)
.+|+||+.||+
T Consensus 126 -------a~NaLLK~LEE 136 (329)
T PRK08058 126 -------AANSLLKFLEE 136 (329)
T ss_pred -------HHHHHHHHhcC
Confidence 89999999995
No 185
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.65 E-value=2.8e-07 Score=90.99 Aligned_cols=123 Identities=26% Similarity=0.360 Sum_probs=83.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ ++|.|+.|+.|......... + .+..|+||+|+.|||||+++|++..++
T Consensus 25 ~l~~-L~Gie~Qk~~l~~Nt~~Fl~---------G------------------~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 25 RLDD-LIGIERQKEALIENTEQFLQ---------G------------------LPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CHHH-hcCHHHHHHHHHHHHHHHHc---------C------------------CCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3455 79999999988776632211 1 234789999999999999999999876
Q ss_pred ---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHH
Q 012525 350 ---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (461)
Q Consensus 350 ---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~ 426 (461)
+..+|++...++.. ...++..+- ... ..=|||+|++- +... +.-...|-.
T Consensus 77 ~~~GLRlIev~k~~L~~-------l~~l~~~l~-~~~------~kFIlf~DDLs-Fe~~------------d~~yk~LKs 129 (249)
T PF05673_consen 77 ADQGLRLIEVSKEDLGD-------LPELLDLLR-DRP------YKFILFCDDLS-FEEG------------DTEYKALKS 129 (249)
T ss_pred hhcCceEEEECHHHhcc-------HHHHHHHHh-cCC------CCEEEEecCCC-CCCC------------cHHHHHHHH
Confidence 56788888887763 233333322 222 34499999854 2222 224678888
Q ss_pred HHhCceeeeecceeeecCCeEEEecCCC
Q 012525 427 MLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 427 ~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
+|||..- ..|.+.++.+|||.
T Consensus 130 ~LeGgle-------~~P~NvliyATSNR 150 (249)
T PF05673_consen 130 VLEGGLE-------ARPDNVLIYATSNR 150 (249)
T ss_pred HhcCccc-------cCCCcEEEEEecch
Confidence 9997653 23567899999995
No 186
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.62 E-value=7.6e-08 Score=96.97 Aligned_cols=116 Identities=28% Similarity=0.397 Sum_probs=82.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHH------hcCCceEEecchhhhhcC----cccccHHHHHHHHHHhhchhhhccCceEE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR------HVNVPFVIADATTLTQAG----YVGEDVESILYKLLAQAEFNVEAAQQGMV 394 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~------~l~~pfv~i~~s~l~~~g----~vGe~~e~~L~~lf~~a~~~v~~a~~gVL 394 (461)
..+|||.||+|.||+.||+.|.+ .+..+|++++|..+...+ ++|.. ...+...-....+.+..+.+++|
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggml 286 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCceE
Confidence 46799999999999999999975 456799999999887421 01110 11111111233445667899999
Q ss_pred EEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 395 fIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
|+|||..|..+ -|.-||+.+|+..+......+....++.+|+-+-.|
T Consensus 287 fldeigelgad--------------eqamllkaieekrf~pfgsdr~v~sdfqliagtvrd 333 (531)
T COG4650 287 FLDEIGELGAD--------------EQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRD 333 (531)
T ss_pred ehHhhhhcCcc--------------HHHHHHHHHHhhccCCCCCccccccchHHhhhhHHH
Confidence 99999998887 688899999998887777666666677777655433
No 187
>PRK12377 putative replication protein; Provisional
Probab=98.61 E-value=6.4e-08 Score=95.76 Aligned_cols=103 Identities=15% Similarity=0.247 Sum_probs=62.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc---CcccccHHHHHHHHHHhhchhhhccCceEEEEcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~---g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDE 398 (461)
..+++|+|+||||||+||.+||+.+ +..++.++..++... .+.... ....++.. ...-.+|+|||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~------l~~~dLLiIDD 171 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQE------LCKVDLLVLDE 171 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHH------hcCCCEEEEcC
Confidence 3679999999999999999999987 456667776665531 000000 00111111 12455999999
Q ss_pred ccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 399 ID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
+...... +..+..|..+|+..... ..=.|.|||+..++
T Consensus 172 lg~~~~s------------~~~~~~l~~ii~~R~~~----------~~ptiitSNl~~~~ 209 (248)
T PRK12377 172 IGIQRET------------KNEQVVLNQIIDRRTAS----------MRSVGMLTNLNHEA 209 (248)
T ss_pred CCCCCCC------------HHHHHHHHHHHHHHHhc----------CCCEEEEcCCCHHH
Confidence 9754322 11567888888844311 12346678876543
No 188
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.3e-07 Score=103.93 Aligned_cols=131 Identities=26% Similarity=0.313 Sum_probs=94.8
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHH
Q 012525 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 263 t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLA 342 (461)
|.......||. |+|.++.++++...|.. ..+.|.+|.|+||+|||.++
T Consensus 161 t~~Ar~gklDP-vIGRd~EI~r~iqIL~R-------------------------------R~KNNPvLiGEpGVGKTAIv 208 (786)
T COG0542 161 TELAREGKLDP-VIGRDEEIRRTIQILSR-------------------------------RTKNNPVLVGEPGVGKTAIV 208 (786)
T ss_pred HHHHhcCCCCC-CcChHHHHHHHHHHHhc-------------------------------cCCCCCeEecCCCCCHHHHH
Confidence 44445556666 89999999988888831 22467899999999999999
Q ss_pred HHHHHhc----------CCceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccc
Q 012525 343 KTLARHV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (461)
Q Consensus 343 raLA~~l----------~~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~ 411 (461)
+.||..+ +..++.++...+.. .+|.|+- |..++.+..+.... .+.||||||||.+...-...+.
T Consensus 209 EGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev~~~----~~vILFIDEiHtiVGAG~~~G~ 283 (786)
T COG0542 209 EGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEVEKS----KNVILFIDEIHTIVGAGATEGG 283 (786)
T ss_pred HHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHHhcC----CCeEEEEechhhhcCCCccccc
Confidence 9999865 34678888887664 3566655 88888888765533 5789999999999877221110
Q ss_pred ccccchHHHHHHHHHHHhCceeee
Q 012525 412 SRDVSGEGVQQALLKMLEGTETKT 435 (461)
Q Consensus 412 ~~~~s~~~v~~aLL~~LEg~~v~i 435 (461)
+-+ +-|.|..+|..+++..
T Consensus 284 a~D-----AaNiLKPaLARGeL~~ 302 (786)
T COG0542 284 AMD-----AANLLKPALARGELRC 302 (786)
T ss_pred ccc-----hhhhhHHHHhcCCeEE
Confidence 122 6678888888665543
No 189
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.59 E-value=1.5e-07 Score=96.29 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC----
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~---- 350 (461)
++|++...+.|...+..... + ..+.+++|+||||||||++++.+++.+.
T Consensus 17 l~gRe~e~~~l~~~l~~~~~---------~------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~ 69 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILR---------G------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAE 69 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHc---------C------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 78999999999888742110 0 1236799999999999999999998653
Q ss_pred -----CceEEecchhh
Q 012525 351 -----VPFVIADATTL 361 (461)
Q Consensus 351 -----~pfv~i~~s~l 361 (461)
..++.++|...
T Consensus 70 ~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 70 DRDVRVVTVYVNCQIL 85 (365)
T ss_pred ccCCceEEEEEECCCC
Confidence 46778887643
No 190
>PRK08116 hypothetical protein; Validated
Probab=98.57 E-value=5.5e-07 Score=89.93 Aligned_cols=104 Identities=18% Similarity=0.328 Sum_probs=62.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc---CcccccHHHHHHHHHHhhchhhhccCceEEEEcCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~---g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEI 399 (461)
.+++|+|++|||||+||.+||+.+ +.+++.++..++... .|.... ......++... ....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~l------~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRSL------VNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHHh------cCCCEEEEecc
Confidence 459999999999999999999976 667888887765531 010000 00011111111 13349999999
Q ss_pred cccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 400 D~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
...... +..+..|+.+|+... .....+|.|||..+.+
T Consensus 188 g~e~~t------------~~~~~~l~~iin~r~----------~~~~~~IiTsN~~~~e 224 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIIDSRY----------RKGLPTIVTTNLSLEE 224 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHH
Confidence 642111 126778888888432 1123578888887654
No 191
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3.5e-07 Score=93.94 Aligned_cols=87 Identities=23% Similarity=0.319 Sum_probs=59.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLA 380 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~ 380 (461)
++.+||+||+|+|||++|+.+|+.+.+. ++.+....-. ..+ . .+.++.+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~--~~i--~-id~iR~l~~ 96 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD--KTI--K-VDQVRELVS 96 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC--CCC--C-HHHHHHHHH
Confidence 3669999999999999999999988541 2222111000 001 1 244555555
Q ss_pred hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 381 ~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
............|++|||+|+|... .+|+||+.||+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE 132 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE 132 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC
Confidence 4444334456779999999999998 89999999995
No 192
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.52 E-value=7.7e-07 Score=92.01 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=45.4
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc----
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---- 349 (461)
.++|+++..+.|...+..... + ..+.+++|+||||||||++++.+++.+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~---------~------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALR---------G------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhC---------C------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 378899888888887742110 0 123679999999999999999999877
Q ss_pred -CCceEEecchhh
Q 012525 350 -NVPFVIADATTL 361 (461)
Q Consensus 350 -~~pfv~i~~s~l 361 (461)
+..++.+++...
T Consensus 84 ~~~~~v~in~~~~ 96 (394)
T PRK00411 84 VKVVYVYINCQID 96 (394)
T ss_pred CCcEEEEEECCcC
Confidence 467888887643
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=5e-07 Score=78.36 Aligned_cols=102 Identities=23% Similarity=0.411 Sum_probs=59.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc--------CCceEEecchhhhhc-----------Cc--cc-ccHHHHHHHHHHhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV--------NVPFVIADATTLTQA-----------GY--VG-EDVESILYKLLAQA 382 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l--------~~pfv~i~~s~l~~~-----------g~--vG-e~~e~~L~~lf~~a 382 (461)
...++++|++|+|||++++.+++.+ ..+++.+++...... +. .. ....... ..+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~-~~~~~- 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELR-SLLID- 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHH-HHHHH-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHH-HHHHH-
Confidence 3678999999999999999999977 667777777644411 00 01 1111122 22211
Q ss_pred chhhhccCceEEEEcCcccc-chhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 383 EFNVEAAQQGMVYIDEVDKI-TKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 383 ~~~v~~a~~gVLfIDEID~L-~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
.+......+|+|||+|.+ ... +.+.|..+++...+ .++++.+.+++
T Consensus 82 --~l~~~~~~~lviDe~~~l~~~~--------------~l~~l~~l~~~~~~-----------~vvl~G~~~l~ 128 (131)
T PF13401_consen 82 --ALDRRRVVLLVIDEADHLFSDE--------------FLEFLRSLLNESNI-----------KVVLVGTPELE 128 (131)
T ss_dssp --HHHHCTEEEEEEETTHHHHTHH--------------HHHHHHHHTCSCBE-----------EEEEEESSTTT
T ss_pred --HHHhcCCeEEEEeChHhcCCHH--------------HHHHHHHHHhCCCC-----------eEEEEEChhhH
Confidence 112223359999999998 433 78888887773332 25666666544
No 194
>PRK08727 hypothetical protein; Validated
Probab=98.50 E-value=9.9e-07 Score=86.01 Aligned_cols=64 Identities=25% Similarity=0.317 Sum_probs=41.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
..++|+|++|||||+|+++++..+ +...+.++..++.. .+...+.... +.-+|+||||+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~----------~~~~~~~~l~------~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG----------RLRDALEALE------GRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh----------hHHHHHHHHh------cCCEEEEeCcccc
Confidence 348999999999999999998765 34445555444331 1112222111 2348999999988
Q ss_pred chh
Q 012525 403 TKK 405 (461)
Q Consensus 403 ~~~ 405 (461)
...
T Consensus 106 ~~~ 108 (233)
T PRK08727 106 AGQ 108 (233)
T ss_pred cCC
Confidence 755
No 195
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=3.7e-06 Score=92.62 Aligned_cols=73 Identities=12% Similarity=0.276 Sum_probs=46.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-----CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
..++|+|++|||||+|+++|++++ +..++++++.++... +........ ...|... + ....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e-l~~al~~~~-~~~f~~~---y--~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE-FINSIRDGK-GDSFRRR---Y--REMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHHhcc-HHHHHHH---h--hcCCEEEEehhc
Confidence 348999999999999999999876 456778888776531 211100000 1112111 1 134599999999
Q ss_pred ccchh
Q 012525 401 KITKK 405 (461)
Q Consensus 401 ~L~~~ 405 (461)
.+..+
T Consensus 388 ~l~gk 392 (617)
T PRK14086 388 FLEDK 392 (617)
T ss_pred cccCC
Confidence 88765
No 196
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.48 E-value=1.1e-06 Score=85.91 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=40.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
.+++|+||+|||||+|++++++.+. ..++.+........ ....+ +.+. .-.+||||||+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~------~~~~~-~~~~---------~~dlliiDdi~~~ 109 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF------VPEVL-EGME---------QLSLVCIDNIECI 109 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh------hHHHH-HHhh---------hCCEEEEeChhhh
Confidence 5799999999999999999998764 23444444332210 01111 1111 1138999999988
Q ss_pred chh
Q 012525 403 TKK 405 (461)
Q Consensus 403 ~~~ 405 (461)
..+
T Consensus 110 ~~~ 112 (235)
T PRK08084 110 AGD 112 (235)
T ss_pred cCC
Confidence 754
No 197
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.47 E-value=5.9e-07 Score=86.33 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=51.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
.+++|+||+|||||+||+++++.+ +..++.+++..+... +.. .....+|||||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--------------~~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--------------FDF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--------------Hhh------cccCCEEEEeChhhc
Confidence 679999999999999999999875 557777777665421 000 113568999999988
Q ss_pred chhhhccccccccchHHHHHHHHHHHh
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
... .+..|+.+|+
T Consensus 103 ~~~--------------~~~~L~~~~~ 115 (227)
T PRK08903 103 DDA--------------QQIALFNLFN 115 (227)
T ss_pred Cch--------------HHHHHHHHHH
Confidence 765 5667777775
No 198
>PRK06893 DNA replication initiation factor; Validated
Probab=98.47 E-value=3.1e-07 Score=89.26 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=40.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
..++|+||||||||+|++++|+++ +...+.++...... .....+... .+..+|+||||+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~----------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY----------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh----------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 347999999999999999999876 23334444432211 001111111 13459999999988
Q ss_pred chh
Q 012525 403 TKK 405 (461)
Q Consensus 403 ~~~ 405 (461)
...
T Consensus 104 ~~~ 106 (229)
T PRK06893 104 IGN 106 (229)
T ss_pred cCC
Confidence 654
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.47 E-value=1.5e-07 Score=88.46 Aligned_cols=101 Identities=24% Similarity=0.352 Sum_probs=58.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc---CcccccHHHHHHHHHHhhchhhhccCceEEEEcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~---g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDE 398 (461)
..+++|+|++|||||+||.++++++ +.+++.++..++... .+.....+..+..+. .-.+|+|||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~----------~~dlLilDD 116 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK----------RVDLLILDD 116 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH----------TSSCEEEET
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc----------cccEecccc
Confidence 4789999999999999999999865 667777777766532 111112222222222 334899999
Q ss_pred ccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 399 ID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
+...... +...+.|+++|+... .+. -.|.|||++.++
T Consensus 117 lG~~~~~------------~~~~~~l~~ii~~R~----------~~~-~tIiTSN~~~~~ 153 (178)
T PF01695_consen 117 LGYEPLS------------EWEAELLFEIIDERY----------ERK-PTIITSNLSPSE 153 (178)
T ss_dssp CTSS---------------HHHHHCTHHHHHHHH----------HT--EEEEEESS-HHH
T ss_pred cceeeec------------ccccccchhhhhHhh----------ccc-CeEeeCCCchhh
Confidence 9854332 114566777777332 112 345588887543
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.46 E-value=5.8e-07 Score=88.83 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=62.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccc--cHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe--~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
.+++|+|++|||||+||.+||+++ +..++.++..++... +... ........++... ....+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~-l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA-MKDTFSNSETSEEQLLNDL------SNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH-HHHHHhhccccHHHHHHHh------ccCCEEEEeCCC
Confidence 579999999999999999999987 567777777766531 1000 0000111122111 134599999998
Q ss_pred ccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 401 ~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
..... +-....|..+++... ....-.|.|||+..++
T Consensus 173 ~~~~s------------~~~~~~l~~Ii~~Ry----------~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 173 VQTES------------RYEKVIINQIVDRRS----------SSKRPTGMLTNSNMEE 208 (244)
T ss_pred CCCCC------------HHHHHHHHHHHHHHH----------hCCCCEEEeCCCCHHH
Confidence 75432 113456667777332 1123566777776543
No 201
>PRK08181 transposase; Validated
Probab=98.45 E-value=2e-07 Score=93.28 Aligned_cols=87 Identities=23% Similarity=0.372 Sum_probs=54.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
...+++|+||+|||||+||.+|+.++ +..++.++..++... +.....+..+...+... .+..+|+|||++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~l------~~~dLLIIDDlg 177 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAKL------DKFDLLILDDLA 177 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHHH------hcCCEEEEeccc
Confidence 46789999999999999999999755 556777777766642 10000000111111111 134599999999
Q ss_pred ccchhhhccccccccchHHHHHHHHHHHh
Q 012525 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 401 ~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
.+.... ..+..|+++++
T Consensus 178 ~~~~~~------------~~~~~Lf~lin 194 (269)
T PRK08181 178 YVTKDQ------------AETSVLFELIS 194 (269)
T ss_pred cccCCH------------HHHHHHHHHHH
Confidence 765541 14667788877
No 202
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.42 E-value=2.9e-08 Score=101.82 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=84.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHH
Q 012525 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 267 l~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
+...+...|+|.+.+|..|.-.+.. ...... ....-....-||||+|.||||||.|.+.++
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~-------~~~~~~------------~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~ 78 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFG-------GVEKND------------PDGTRIRGNIHILLVGDPGTGKSQLLKYVA 78 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT---------SCCC------------CT-TEE--S--EEEECSCHHCHHHHHHCCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHh-------cccccc------------ccccccccccceeeccchhhhHHHHHHHHH
Confidence 5566667799999999877655521 000000 000012235799999999999999999887
Q ss_pred HhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHH
Q 012525 347 RHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (461)
Q Consensus 347 ~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~ 426 (461)
+.....+ .++.......++...........-+.-..+.+..+++||++|||+|+|... ..++|++
T Consensus 79 ~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~e 143 (331)
T PF00493_consen 79 KLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALHE 143 (331)
T ss_dssp CT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHHH
T ss_pred hhCCceE-EECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHHH
Confidence 6654432 333222221221110000000000111223445678999999999999987 7899999
Q ss_pred HHhCceeeeecc--eeeecCCeEEEecCCCCc
Q 012525 427 MLEGTETKTFAA--VSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 427 ~LEg~~v~i~~~--~r~~~rd~IiI~TsNid~ 456 (461)
.||...+.+--. ....+.+.-+++++|+..
T Consensus 144 aMEqq~isi~kagi~~~l~ar~svlaa~NP~~ 175 (331)
T PF00493_consen 144 AMEQQTISIAKAGIVTTLNARCSVLAAANPKF 175 (331)
T ss_dssp HHHCSCEEECTSSSEEEEE---EEEEEE--TT
T ss_pred HHHcCeeccchhhhcccccchhhhHHHHhhhh
Confidence 999888877654 444555889999988754
No 203
>PRK06526 transposase; Provisional
Probab=98.41 E-value=2.5e-07 Score=91.78 Aligned_cols=87 Identities=24% Similarity=0.350 Sum_probs=51.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
...+++|+||||||||+||.+|+.++ +..++.+.+.++... +........+...+.. ..+..+|+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~-l~~~~~~~~~~~~l~~------l~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-LAAAHHAGRLQAELVK------LGRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH-HHHHHhcCcHHHHHHH------hccCCEEEEcccc
Confidence 46799999999999999999998765 455555555544421 0000000011111111 1244699999999
Q ss_pred ccchhhhccccccccchHHHHHHHHHHHh
Q 012525 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 401 ~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
.+..... .++.|+++++
T Consensus 170 ~~~~~~~------------~~~~L~~li~ 186 (254)
T PRK06526 170 YIPFEPE------------AANLFFQLVS 186 (254)
T ss_pred cCCCCHH------------HHHHHHHHHH
Confidence 7654311 4567777776
No 204
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.39 E-value=6.9e-07 Score=88.63 Aligned_cols=73 Identities=23% Similarity=0.404 Sum_probs=49.0
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc---CcccccHHHHHHHHHHhhchhhhccCceEEEEc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~---g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfID 397 (461)
...+++|+|+||||||+||-||++++ +..++.+...++... .+-....+..+...+. .--|||||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~---------~~dlLIiD 174 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK---------KVDLLIID 174 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh---------cCCEEEEe
Confidence 56799999999999999999999877 567777777776642 0110111222222221 33499999
Q ss_pred Cccccchh
Q 012525 398 EVDKITKK 405 (461)
Q Consensus 398 EID~L~~~ 405 (461)
|+-.....
T Consensus 175 DlG~~~~~ 182 (254)
T COG1484 175 DIGYEPFS 182 (254)
T ss_pred cccCccCC
Confidence 99976554
No 205
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.39 E-value=2.3e-06 Score=76.70 Aligned_cols=109 Identities=21% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHH
Q 012525 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (461)
Q Consensus 262 ~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtL 341 (461)
.....+.+.|.+.|+||+-|++.+..++..+...- . + ..+-.+.|+|++|||||.+
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~------~-------p-----------~KpLVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP------N-------P-----------RKPLVLSFHGWTGTGKNFV 69 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC------C-------C-----------CCCEEEEeecCCCCcHHHH
Confidence 45678999999999999999999999997554310 0 0 1123455999999999999
Q ss_pred HHHHHHhc-----CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEE
Q 012525 342 AKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYI 396 (461)
Q Consensus 342 AraLA~~l-----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfI 396 (461)
++.||+.+ +.+||..-.+...-. -...+...-..+-.+....+.....+++++
T Consensus 70 ~~liA~~ly~~G~~S~~V~~f~~~~hFP--~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 70 SRLIAEHLYKSGMKSPFVHQFIATHHFP--HNSNVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred HHHHHHHHHhcccCCCceeeecccccCC--CchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 99999986 335553332221110 011223333444455556666666666653
No 206
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.37 E-value=3e-06 Score=95.87 Aligned_cols=86 Identities=19% Similarity=0.324 Sum_probs=53.7
Q ss_pred EEEEccCCCchHHHHHHHHHhc----------CCceEEecchhhhhcC---------c------ccccHHHHHHHHHHhh
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQAG---------Y------VGEDVESILYKLLAQA 382 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l----------~~pfv~i~~s~l~~~g---------~------vGe~~e~~L~~lf~~a 382 (461)
++|+|+||||||++++.+.+++ ...++.++|..+.... + .|......+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 4699999999999999998766 1457889885533210 0 1112223444444432
Q ss_pred chhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 383 ~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
... .....||+|||||.|... .+..|+.+++
T Consensus 864 ~k~--~r~v~IIILDEID~L~kK--------------~QDVLYnLFR 894 (1164)
T PTZ00112 864 KKD--NRNVSILIIDEIDYLITK--------------TQKVLFTLFD 894 (1164)
T ss_pred hcc--cccceEEEeehHhhhCcc--------------HHHHHHHHHH
Confidence 110 112358999999999876 3566777766
No 207
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.36 E-value=8.3e-07 Score=92.97 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=45.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-----CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
.+++|+|++|||||+|++++++++ +..++.+++.++... +........+.. |.. .+. ...+|+||||+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~-~~~---~~~--~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND-FVNALRNNKMEE-FKE---KYR--SVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH-HHHHHHcCCHHH-HHH---HHH--hCCEEEEehhh
Confidence 458999999999999999999877 466788887765421 110000000001 111 111 23499999999
Q ss_pred ccchh
Q 012525 401 KITKK 405 (461)
Q Consensus 401 ~L~~~ 405 (461)
.+..+
T Consensus 210 ~l~~~ 214 (405)
T TIGR00362 210 FLAGK 214 (405)
T ss_pred hhcCC
Confidence 88654
No 208
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.32 E-value=2e-06 Score=73.93 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=57.4
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCce--------EEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPF--------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pf--------v~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEI 399 (461)
|.|+|+||+|||++|+.||+.+...+ +.....+---.+|. ...++++||+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~----------------------~q~vvi~DD~ 58 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ----------------------GQPVVIIDDF 58 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC----------------------CCcEEEEeec
Confidence 57999999999999999998774322 11111111101111 3458999999
Q ss_pred cccchhhhccccccccchHHHHHHHHHHHhCceeeeecc-ee-e-ecC-CeEEEecCCC
Q 012525 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA-VS-K-VSR-DNLYIKTSGL 454 (461)
Q Consensus 400 D~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r-~-~~r-d~IiI~TsNi 454 (461)
......- .......|+++++...+..... .. + ... -.++|.|||.
T Consensus 59 ~~~~~~~----------~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 59 GQDNDGY----------NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred Ccccccc----------chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 9766430 1125778889998666655433 11 1 111 4688889884
No 209
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=5.3e-06 Score=85.09 Aligned_cols=92 Identities=28% Similarity=0.355 Sum_probs=57.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCce--E--Eecchhhhhc----Cc--c-------cc-----cHHHHHHHHHHhhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF--V--IADATTLTQA----GY--V-------GE-----DVESILYKLLAQAE 383 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pf--v--~i~~s~l~~~----g~--v-------Ge-----~~e~~L~~lf~~a~ 383 (461)
+.+||+||+|+||+++|+++|+.+.+.- - ...+..+... ++ + +. -..+.++.+.....
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 4599999999999999999998774310 0 0000000000 00 0 10 01334455554444
Q ss_pred hhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCc
Q 012525 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 384 ~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~ 431 (461)
.........|++||++|+|... ..|+||+.||+-
T Consensus 107 ~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEEP 140 (319)
T PRK08769 107 LTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEEP 140 (319)
T ss_pred hCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhCC
Confidence 3333345679999999999988 899999999953
No 210
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.30 E-value=8.6e-07 Score=94.31 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=46.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-----CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
.+++|+||+|||||+|++++++++ +..++.+++.++... +...-...... .|.. .+. ...+|+||||+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~-~~~~---~~~--~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND-FVNALRNNTME-EFKE---KYR--SVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHcCcHH-HHHH---HHh--cCCEEEEehhh
Confidence 458999999999999999999987 455778888766531 11100000001 1111 111 34499999999
Q ss_pred ccchh
Q 012525 401 KITKK 405 (461)
Q Consensus 401 ~L~~~ 405 (461)
.+..+
T Consensus 222 ~l~~~ 226 (450)
T PRK00149 222 FLAGK 226 (450)
T ss_pred hhcCC
Confidence 88665
No 211
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=7e-06 Score=84.38 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=58.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLA 380 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~ 380 (461)
++.+||+||.|+||+++|+++|+.+.+. |+.+...+ ...+ . .+.++.+..
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~I--~-id~iR~l~~ 97 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID---NKDI--G-VDQVREINE 97 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc---CCCC--C-HHHHHHHHH
Confidence 3568899999999999999999977431 11221110 0011 1 344555554
Q ss_pred hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 381 ~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
............|++||++|+|... ..|+||+.||+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE 133 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE 133 (325)
T ss_pred HHhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC
Confidence 4444434456679999999999998 89999999994
No 212
>PRK05642 DNA replication initiation factor; Validated
Probab=98.27 E-value=3e-06 Score=82.73 Aligned_cols=64 Identities=27% Similarity=0.354 Sum_probs=43.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
.+++|+|++|||||+|++++++++ +..++.++..++... ....+ +.+. .--+|+|||++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------~~~~~-~~~~---------~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------GPELL-DNLE---------QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------hHHHH-Hhhh---------hCCEEEEechhhh
Confidence 568999999999999999999754 456777777766531 01111 1111 1238999999977
Q ss_pred chh
Q 012525 403 TKK 405 (461)
Q Consensus 403 ~~~ 405 (461)
..+
T Consensus 110 ~~~ 112 (234)
T PRK05642 110 AGK 112 (234)
T ss_pred cCC
Confidence 654
No 213
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=3.4e-06 Score=93.51 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHH
Q 012525 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 263 t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLA 342 (461)
..+-..+.+++ |+|+++.++.|..++...... .....-++|+||+|||||+++
T Consensus 75 ~eKyrP~~lde-l~~~~~ki~~l~~~l~~~~~~--------------------------~~~~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 75 VEKYKPETQHE-LAVHKKKIEEVETWLKAQVLE--------------------------NAPKRILLITGPSGCGKSTTI 127 (637)
T ss_pred HHHhCCCCHHH-hcCcHHHHHHHHHHHHhcccc--------------------------cCCCcEEEEECCCCCCHHHHH
Confidence 33444556666 899999999888777321000 011234899999999999999
Q ss_pred HHHHHhcCCceEE
Q 012525 343 KTLARHVNVPFVI 355 (461)
Q Consensus 343 raLA~~l~~pfv~ 355 (461)
+.+|+.++..+++
T Consensus 128 ~~la~~l~~~~~E 140 (637)
T TIGR00602 128 KILSKELGIQVQE 140 (637)
T ss_pred HHHHHHhhhHHHH
Confidence 9999998776544
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=98.26 E-value=1.3e-06 Score=86.76 Aligned_cols=106 Identities=21% Similarity=0.278 Sum_probs=61.3
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEI 399 (461)
....+++|+||+|||||+||.+|+..+ +..+..++..++... +........+...+... .....+|+|||+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~-l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ-LSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH-HHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 345789999999999999999997654 556666666555421 10000000111222111 124459999999
Q ss_pred cccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 400 D~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
+.+...+. ..+.|+++++...- +. -+|.|||....
T Consensus 174 g~~~~~~~------------~~~~lf~li~~r~~----------~~-s~iiTsn~~~~ 208 (259)
T PRK09183 174 GYLPFSQE------------EANLFFQVIAKRYE----------KG-SMILTSNLPFG 208 (259)
T ss_pred ccCCCChH------------HHHHHHHHHHHHHh----------cC-cEEEecCCCHH
Confidence 87544421 45677777763211 11 25668887654
No 215
>PRK06921 hypothetical protein; Provisional
Probab=98.26 E-value=3e-06 Score=84.58 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=29.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc----CCceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~s~l~ 362 (461)
.+++|+|++|||||+||.+||+++ +..++.+...++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~ 158 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF 158 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH
Confidence 679999999999999999999876 4456666665544
No 216
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.1e-05 Score=86.77 Aligned_cols=94 Identities=29% Similarity=0.405 Sum_probs=66.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch-hhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s-~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
..+||.||||+|||+||-.+|...+.||+.+-.. ++. |+....--..+.+.|..+..+ .-+||++|+|++|..
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi--G~sEsaKc~~i~k~F~DAYkS----~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI--GLSESAKCAHIKKIFEDAYKS----PLSIIVVDDIERLLD 612 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHcc--CccHHHHHHHHHHHHHHhhcC----cceEEEEcchhhhhc
Confidence 5699999999999999999999999999966544 433 222222234567788877765 567999999999876
Q ss_pred hhhccccccccchHHHHHHHHHHHh
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
- ..++. ..+.-++++|+.+|.
T Consensus 613 ~---vpIGP-RfSN~vlQaL~VllK 633 (744)
T KOG0741|consen 613 Y---VPIGP-RFSNLVLQALLVLLK 633 (744)
T ss_pred c---cccCc-hhhHHHHHHHHHHhc
Confidence 4 11122 223447778887776
No 217
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.2e-06 Score=87.30 Aligned_cols=78 Identities=28% Similarity=0.438 Sum_probs=51.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc-----eEEecchhhhhc--------------CcccccHHHHHHHHHHhhchh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-----FVIADATTLTQA--------------GYVGEDVESILYKLLAQAEFN 385 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p-----fv~i~~s~l~~~--------------g~vGe~~e~~L~~lf~~a~~~ 385 (461)
+.|++++|+||||||.+++.+++++... ++.++|..+... -..|......+..+......
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~- 120 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK- 120 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh-
Confidence 4679999999999999999999988543 889999765532 01122222222222221111
Q ss_pred hhccCceEEEEcCccccchh
Q 012525 386 VEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 386 v~~a~~gVLfIDEID~L~~~ 405 (461)
....-||+|||+|.|...
T Consensus 121 --~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 121 --KGKTVIVILDEVDALVDK 138 (366)
T ss_pred --cCCeEEEEEcchhhhccc
Confidence 234568999999999987
No 218
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.2e-06 Score=93.20 Aligned_cols=77 Identities=27% Similarity=0.448 Sum_probs=60.8
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhcCC----ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcC
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l~~----pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDE 398 (461)
....+|||+||+|+|||.|++++++++.. .+..++|+.+.... -+.+.+.+...|..+... .|+||+||+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~~----~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALWY----APSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHhh----CCcEEEEcc
Confidence 45689999999999999999999998864 35578888887542 234456677777766554 899999999
Q ss_pred ccccchh
Q 012525 399 VDKITKK 405 (461)
Q Consensus 399 ID~L~~~ 405 (461)
+|.|...
T Consensus 503 ld~l~~~ 509 (952)
T KOG0735|consen 503 LDCLASA 509 (952)
T ss_pred hhhhhcc
Confidence 9999884
No 219
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.23 E-value=1.1e-06 Score=96.14 Aligned_cols=149 Identities=19% Similarity=0.277 Sum_probs=89.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHH
Q 012525 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 267 l~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
+...+...|.|.|.+|+.|.-.|. ....+... .... -....||||+|.||||||.|.+.++
T Consensus 423 La~SiAPsIye~edvKkglLLqLf-------GGt~k~~~-~~~~-----------~R~~INILL~GDPGtsKSqlLqyv~ 483 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLF-------GGTRKEDE-KSGR-----------FRGDINILLVGDPGTSKSQLLQYCH 483 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHh-------cCCccccc-cccc-----------ccccceEEEecCCCcCHHHHHHHHH
Confidence 444455567888888887766552 11111110 0000 0123789999999999999999999
Q ss_pred HhcCCceEEe-cch---hhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHH
Q 012525 347 RHVNVPFVIA-DAT---TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (461)
Q Consensus 347 ~~l~~pfv~i-~~s---~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~ 422 (461)
+.+..-.+.- ..+ .++. |+-.+.+ .+.+-...+.+..+.+||-.|||+|+|... .++
T Consensus 484 ~l~pRg~yTSGkGsSavGLTa--yVtrd~d---tkqlVLesGALVLSD~GiCCIDEFDKM~dS--------------trS 544 (804)
T KOG0478|consen 484 RLLPRGVYTSGKGSSAVGLTA--YVTKDPD---TRQLVLESGALVLSDNGICCIDEFDKMSDS--------------TRS 544 (804)
T ss_pred HhCCcceeecCCccchhccee--eEEecCc---cceeeeecCcEEEcCCceEEchhhhhhhHH--------------HHH
Confidence 9885432210 001 1110 1111100 011112234455678999999999999888 789
Q ss_pred HHHHHHhCceeeeecc--eeeecCCeEEEecCC
Q 012525 423 ALLKMLEGTETKTFAA--VSKVSRDNLYIKTSG 453 (461)
Q Consensus 423 aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsN 453 (461)
.|++.||...+++.-. ....+.+.-++++.|
T Consensus 545 vLhEvMEQQTvSIAKAGII~sLNAR~SVLAaAN 577 (804)
T KOG0478|consen 545 VLHEVMEQQTLSIAKAGIIASLNARCSVLAAAN 577 (804)
T ss_pred HHHHHHHHhhhhHhhcceeeeccccceeeeeec
Confidence 9999999888776544 333444677788888
No 220
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=9e-06 Score=83.52 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=61.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC-------------------------ceEEecchhh-hhcCc--ccccHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV-------------------------PFVIADATTL-TQAGY--VGEDVESILY 376 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~-------------------------pfv~i~~s~l-~~~g~--vGe~~e~~L~ 376 (461)
++.+||+||+|+|||++|+.+|+.+.+ +|+.+....- .+.+. ..-. .+.++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~-id~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK-IDAVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC-HHHHH
Confidence 356999999999999999999997743 2333332210 00000 0001 34456
Q ss_pred HHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCc
Q 012525 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 377 ~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~ 431 (461)
.+..............|++||+++.|... .+++|++.||+.
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep 140 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEP 140 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhC
Confidence 66655554444456779999999999998 899999999954
No 221
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=8.8e-06 Score=84.19 Aligned_cols=92 Identities=24% Similarity=0.270 Sum_probs=59.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc-------------------------eEEecchhhh----------------h
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-------------------------FVIADATTLT----------------Q 363 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p-------------------------fv~i~~s~l~----------------~ 363 (461)
++.+||+||+|+||+++|+.+|+.+.+. |+.+...... .
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 4679999999999999999999987542 1112111000 0
Q ss_pred cC-----cccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 364 AG-----YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 364 ~g-----~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+ ....-..+.++.+..............|+|||++|+|... ..|+||+.||+
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 158 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLEE 158 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhcC
Confidence 00 0000012345555554444444456679999999999998 89999999994
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.22 E-value=2.6e-06 Score=87.65 Aligned_cols=103 Identities=19% Similarity=0.325 Sum_probs=61.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCccc---ccHHHHHHHHHHhhchhhhccCceEEEEcCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVG---EDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vG---e~~e~~L~~lf~~a~~~v~~a~~gVLfIDEI 399 (461)
.+++|+|++|||||+||.+||+++ +..++.++..++... +.. .. .......+.. + ..--+|+|||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~-l~~~~~~~-~~~~~~~~~~----l--~~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI-LREIRFNN-DKELEEVYDL----L--INCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH-HHHHHhcc-chhHHHHHHH----h--ccCCEEEEecc
Confidence 679999999999999999999977 557777777766531 100 00 0000000111 1 12248999999
Q ss_pred cccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 400 D~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
...... ...++.|+.+++.... ...-+|.|||..+++
T Consensus 256 G~e~~t------------~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~e 292 (329)
T PRK06835 256 GTEKIT------------EFSKSELFNLINKRLL----------RQKKMIISTNLSLEE 292 (329)
T ss_pred CCCCCC------------HHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHH
Confidence 765432 1156777777773321 122467777776544
No 223
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.21 E-value=1.6e-06 Score=94.43 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=95.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHH
Q 012525 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (461)
Q Consensus 266 el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraL 345 (461)
.+...|-.-|.|.+.+|.-|...+. ..- ++.+. .... -...-||++.|.||||||.+.++.
T Consensus 338 ~lv~Sl~PsIyGhe~VK~GilL~Lf-------GGv-~K~a~----------eg~~-lRGDinv~iVGDPgt~KSQfLk~v 398 (764)
T KOG0480|consen 338 NLVNSLFPSIYGHELVKAGILLSLF-------GGV-HKSAG----------EGTS-LRGDINVCIVGDPGTGKSQFLKAV 398 (764)
T ss_pred HHHHhhCccccchHHHHhhHHHHHh-------CCc-cccCC----------CCcc-ccCCceEEEeCCCCccHHHHHHHH
Confidence 3566666668899999988776662 110 01000 0000 123478999999999999999999
Q ss_pred HHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHH
Q 012525 346 ARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (461)
Q Consensus 346 A~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL 425 (461)
+..+-..++.--- .-..+|+...-+......-|.-..+.+..+.+||-.|||+|+|..+ -+.+|+
T Consensus 399 ~~fsPR~vYtsGk-aSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAih 463 (764)
T KOG0480|consen 399 CAFSPRSVYTSGK-ASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIH 463 (764)
T ss_pred hccCCcceEecCc-ccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHH
Confidence 9988665442221 1111222111101111112322334555689999999999999986 588999
Q ss_pred HHHhCceeeeecc--eeeecCCeEEEecCCC
Q 012525 426 KMLEGTETKTFAA--VSKVSRDNLYIKTSGL 454 (461)
Q Consensus 426 ~~LEg~~v~i~~~--~r~~~rd~IiI~TsNi 454 (461)
+.||...+++--. ....+.+.-+|+++|+
T Consensus 464 EAMEQQtISIaKAGv~aTLnARtSIlAAANP 494 (764)
T KOG0480|consen 464 EAMEQQTISIAKAGVVATLNARTSILAAANP 494 (764)
T ss_pred HHHHhheehheecceEEeecchhhhhhhcCC
Confidence 9999887776533 4444456777777774
No 224
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.19 E-value=9.1e-06 Score=84.68 Aligned_cols=106 Identities=17% Similarity=0.263 Sum_probs=62.1
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhcCCc-eEEecchhhhh----c--Cccc--ccHHHHHHHHHHhhchhhhccCceE
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVP-FVIADATTLTQ----A--GYVG--EDVESILYKLLAQAEFNVEAAQQGM 393 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l~~p-fv~i~~s~l~~----~--g~vG--e~~e~~L~~lf~~a~~~v~~a~~gV 393 (461)
..++++.|+|++|+|||+|.-++...+... -.++....... . .+.+ ..+......+. ..-.|
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~---------~~~~l 130 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA---------KESRL 130 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH---------hcCCE
Confidence 457899999999999999999999887541 11111111110 0 0000 01111111111 12339
Q ss_pred EEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCcCCC
Q 012525 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKTLWP 461 (461)
Q Consensus 394 LfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~l~P 461 (461)
|+|||++--. .+...++..|+..|- .+..++|+|||..++.+++
T Consensus 131 LcfDEF~V~D-----------iaDAmil~rLf~~l~-------------~~gvvlVaTSN~~P~~Ly~ 174 (362)
T PF03969_consen 131 LCFDEFQVTD-----------IADAMILKRLFEALF-------------KRGVVLVATSNRPPEDLYK 174 (362)
T ss_pred EEEeeeeccc-----------hhHHHHHHHHHHHHH-------------HCCCEEEecCCCChHHHcC
Confidence 9999988322 222336667776654 2357999999999998875
No 225
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=3.1e-06 Score=90.18 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=45.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-----CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
.+++||||+|||||+|++++++++ +..++.+++.++... +...-....+.. |... + .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~-f~~~---~-~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNE-FREK---Y-RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHH-HHHH---H-HhcCCEEEEechh
Confidence 459999999999999999999876 345677777665421 100000000111 1110 0 0135599999999
Q ss_pred ccchh
Q 012525 401 KITKK 405 (461)
Q Consensus 401 ~L~~~ 405 (461)
.+..+
T Consensus 205 ~l~~~ 209 (440)
T PRK14088 205 FLIGK 209 (440)
T ss_pred hhcCc
Confidence 87654
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1.2e-05 Score=82.80 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC------------------------ceEEecchhhhhcCcccccHHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV------------------------PFVIADATTLTQAGYVGEDVESILYKLLA 380 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~------------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~ 380 (461)
++.+||+||.|+||+++|+++|+.+.+ +|+.+....-. ..+ . .+.++.+..
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~--~~I--~-idqiR~l~~ 98 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK--SSL--G-VDAVREVTE 98 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc--ccC--C-HHHHHHHHH
Confidence 366899999999999999999997743 11112111000 001 1 234455554
Q ss_pred hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 381 ~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
............|+|||++|+|... ..|+||+.||+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 134 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE 134 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC
Confidence 4443334456779999999999998 89999999994
No 227
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.1e-05 Score=89.67 Aligned_cols=111 Identities=20% Similarity=0.327 Sum_probs=79.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
..+||+|+||||||++.+++|++++.++++++|.++... .....+..+...|..+... .+.||||-.+|-+.-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~--s~~~~etkl~~~f~~a~~~----~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE--SASHTETKLQAIFSRARRC----SPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc--ccchhHHHHHHHHHHHhhc----CceEEEEeccceeeec
Confidence 568999999999999999999999999999999999864 2334478888888877654 8999999999988754
Q ss_pred hhccccccccchHHHHHHHHHHHhCceeeeecceeeecC-CeEEEecCCCC
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSR-DNLYIKTSGLD 455 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~r-d~IiI~TsNid 455 (461)
+.. +.+ .+++..+...|+ ......+. ..|+|+|++-.
T Consensus 506 ~dg---ged---~rl~~~i~~~ls-------~e~~~~~~~~~ivv~t~~s~ 543 (953)
T KOG0736|consen 506 QDG---GED---ARLLKVIRHLLS-------NEDFKFSCPPVIVVATTSSI 543 (953)
T ss_pred CCC---chh---HHHHHHHHHHHh-------cccccCCCCceEEEEecccc
Confidence 322 112 235555555555 11112223 57888777644
No 228
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.12 E-value=1.2e-06 Score=97.14 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=92.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHH
Q 012525 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 267 l~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
+...+...|.|.+.+|+.|.-.+..-..+ ...... --...-||||.|.|||+||.|.+.++
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfgGv~k------------------~~~~g~-~iRGDInILLvGDPgtaKSqlLk~v~ 340 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFGGVKK------------------NLPDGT-RIRGDIHILLVGDPGTAKSQLLKYVA 340 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcCCCcc------------------cCCCCc-ccccceeEEEcCCCchhHHHHHHHHH
Confidence 44555666889999999887766311000 000000 01224789999999999999999999
Q ss_pred HhcCCceE-Eecch---hhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHH
Q 012525 347 RHVNVPFV-IADAT---TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (461)
Q Consensus 347 ~~l~~pfv-~i~~s---~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~ 422 (461)
+.+-..++ ....+ .|+.. .+- + ....-+.-..+.+..+.+||..|||+|+|... -..
T Consensus 341 ~~aPr~vytsgkgss~~GLTAa-v~r-d---~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~ 401 (682)
T COG1241 341 KLAPRGVYTSGKGSSAAGLTAA-VVR-D---KVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRV 401 (682)
T ss_pred hhCCceEEEccccccccCceeE-EEE-c---cCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHH
Confidence 98855432 11111 12211 000 0 00000112234556689999999999999988 789
Q ss_pred HHHHHHhCceeeeecc--eeeecCCeEEEecCCCCc
Q 012525 423 ALLKMLEGTETKTFAA--VSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 423 aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsNid~ 456 (461)
+|.+.||...+++--. ....+.++-++++.|.-.
T Consensus 402 aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~ 437 (682)
T COG1241 402 AIHEAMEQQTISIAKAGITATLNARCSVLAAANPKF 437 (682)
T ss_pred HHHHHHHhcEeeecccceeeecchhhhhhhhhCCCC
Confidence 9999999888776533 223334666777777543
No 229
>PF13173 AAA_14: AAA domain
Probab=98.12 E-value=1e-05 Score=71.32 Aligned_cols=70 Identities=23% Similarity=0.381 Sum_probs=46.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC--CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~--~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
..++|+||.||||||+++.+++.+. ..++.+++.+....... . .. +...+.... ..+..+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~~----~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLELI----KPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHhh----ccCCcEEEEehhhhhc
Confidence 4589999999999999999998876 67777877766532110 0 01 222222211 1156799999999875
No 230
>PRK04132 replication factor C small subunit; Provisional
Probab=98.11 E-value=6.6e-06 Score=93.67 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=61.0
Q ss_pred CCcEEEEc--cCCCchHHHHHHHHHhc-----CCceEEecchhhhhcCcccccHHHHHHHHHHhhch--hhhccCceEEE
Q 012525 325 KSNVLLMG--PTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF--NVEAAQQGMVY 395 (461)
Q Consensus 325 ~~~VLL~G--PPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~--~v~~a~~gVLf 395 (461)
+-+-+..| |.+.||||+|++||+.+ +..|+++++++... ...++........ .+...+..|+|
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 44456678 99999999999999998 45799999998542 2234444332211 11112346999
Q ss_pred EcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 396 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 396 IDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
|||+|.|+.. .|++|++.||.
T Consensus 636 IDEaD~Lt~~--------------AQnALLk~lEe 656 (846)
T PRK04132 636 LDEADALTQD--------------AQQALRRTMEM 656 (846)
T ss_pred EECcccCCHH--------------HHHHHHHHhhC
Confidence 9999999987 89999999994
No 231
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.11 E-value=1.8e-06 Score=93.79 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=83.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHH
Q 012525 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (461)
Q Consensus 266 el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraL 345 (461)
.+...+..-|+|.+.+|..+..++. .. .++-.+. .+++ ....||||+|.||||||.+.|-+
T Consensus 442 rIiaSiaPsIyGh~~VK~AvAlaLf-------GG-v~kn~~~----------khkv-RGDinvLL~GDPGTaKSQFLKY~ 502 (854)
T KOG0477|consen 442 RIIASIAPSIYGHEDVKRAVALALF-------GG-VPKNPGG----------KHKV-RGDINVLLLGDPGTAKSQFLKYA 502 (854)
T ss_pred HHHHhhCchhhchHHHHHHHHHHHh-------cC-CccCCCC----------Ccee-ccceeEEEecCCCccHHHHHHHH
Confidence 3556666668999999998888773 11 0110000 1111 22478999999999999999999
Q ss_pred HHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHH
Q 012525 346 ARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (461)
Q Consensus 346 A~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL 425 (461)
++.....++..-...-. .|+........+...-.-..+.+..+.+||-+|||+|+|.... ...+-
T Consensus 503 eK~s~RAV~tTGqGASa-vGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD--------------RtSIH 567 (854)
T KOG0477|consen 503 EKTSPRAVFTTGQGASA-VGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD--------------RTSIH 567 (854)
T ss_pred HhcCcceeEeccCCccc-cceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccc--------------cchHH
Confidence 98776644422211100 0110000000000000011234556789999999999999862 23455
Q ss_pred HHHhCceeeeecc--eeeecCCeEEEecCCC
Q 012525 426 KMLEGTETKTFAA--VSKVSRDNLYIKTSGL 454 (461)
Q Consensus 426 ~~LEg~~v~i~~~--~r~~~rd~IiI~TsNi 454 (461)
+.||...+.|--. ....-.++.+|+++|.
T Consensus 568 EAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 568 EAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred HHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 5566554443221 1111124566666664
No 232
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.10 E-value=3.2e-05 Score=76.42 Aligned_cols=123 Identities=25% Similarity=0.376 Sum_probs=82.6
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l- 349 (461)
|.. ++|.|+.|+.|......-. .| .+..||||+|--|||||.|.||+..++
T Consensus 59 L~~-l~Gvd~qk~~L~~NT~~F~---------~G------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 59 LAD-LVGVDRQKEALVRNTEQFA---------EG------------------LPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred HHH-HhCchHHHHHHHHHHHHHH---------cC------------------CcccceEEecCCCCChHHHHHHHHHHHH
Confidence 444 7999999998876552111 11 223789999999999999999999877
Q ss_pred --CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 350 --NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 350 --~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+..+|+++-.++..- ..++..+- ... +.-|||.|+.- -+ .++...-+|-.+
T Consensus 111 ~~glrLVEV~k~dl~~L-------p~l~~~Lr-~~~------~kFIlFcDDLS---Fe----------~gd~~yK~LKs~ 163 (287)
T COG2607 111 DEGLRLVEVDKEDLATL-------PDLVELLR-ARP------EKFILFCDDLS---FE----------EGDDAYKALKSA 163 (287)
T ss_pred hcCCeEEEEcHHHHhhH-------HHHHHHHh-cCC------ceEEEEecCCC---CC----------CCchHHHHHHHH
Confidence 457888888888741 23333332 222 34489999854 11 122256788889
Q ss_pred HhCceeeeecceeeecCCeEEEecCCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
|||...- .|.+.++.+|+|..
T Consensus 164 LeG~ve~-------rP~NVl~YATSNRR 184 (287)
T COG2607 164 LEGGVEG-------RPANVLFYATSNRR 184 (287)
T ss_pred hcCCccc-------CCCeEEEEEecCCc
Confidence 9977543 34568888999964
No 233
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=1.2e-05 Score=77.92 Aligned_cols=81 Identities=21% Similarity=0.421 Sum_probs=52.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-----CCceEEecchhhhhcCcc----cccHHHHHHHHHHhhchhhhccCceEEEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYV----GEDVESILYKLLAQAEFNVEAAQQGMVYI 396 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~g~v----Ge~~e~~L~~lf~~a~~~v~~a~~gVLfI 396 (461)
..++|+|++|+|||+|.+++++++ +..++.+++.++... +. .... ..+...+ ..--+|+|
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~-~~~~~~~---------~~~DlL~i 103 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEI-EEFKDRL---------RSADLLII 103 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSH-HHHHHHH---------CTSSEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccc-hhhhhhh---------hcCCEEEE
Confidence 458999999999999999999865 456777877765531 10 0010 1111111 13349999
Q ss_pred cCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 397 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 397 DEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
|+|+.+..+.. .+..|+.+++
T Consensus 104 DDi~~l~~~~~------------~q~~lf~l~n 124 (219)
T PF00308_consen 104 DDIQFLAGKQR------------TQEELFHLFN 124 (219)
T ss_dssp ETGGGGTTHHH------------HHHHHHHHHH
T ss_pred ecchhhcCchH------------HHHHHHHHHH
Confidence 99999887622 5677777766
No 234
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.10 E-value=1.1e-05 Score=84.03 Aligned_cols=81 Identities=27% Similarity=0.423 Sum_probs=55.5
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC--C
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--V 351 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~--~ 351 (461)
-++||.+|+++.-..+..- ...+ ..++.+||.||||||||.||-+||++++ .
T Consensus 25 GlVGQ~~AReAagiiv~mI-----k~~K---------------------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~ 78 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMI-----KEGK---------------------IAGRAILIAGPPGTGKTALAMAIAKELGEDV 78 (398)
T ss_dssp TEES-HHHHHHHHHHHHHH-----HTT-----------------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS
T ss_pred cccChHHHHHHHHHHHHHH-----hccc---------------------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCC
Confidence 4899999999887777321 1111 2348899999999999999999999997 6
Q ss_pred ceEEecchhhhhcCcccccHHHHHHHHHHhhc
Q 012525 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAE 383 (461)
Q Consensus 352 pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~ 383 (461)
||+.++++++-... -.-...|.+.|.++.
T Consensus 79 PF~~isgSEiyS~e---~kKTE~L~qa~RraI 107 (398)
T PF06068_consen 79 PFVSISGSEIYSSE---VKKTEALTQAFRRAI 107 (398)
T ss_dssp -EEEEEGGGG-BTT---C-HHHHHHHHHHCSE
T ss_pred CeeEcccceeeecc---cCchHHHHHHHHHhh
Confidence 99999999887431 122456777777554
No 235
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=7.2e-06 Score=87.57 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=45.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
.+++|+||+|+|||+|++++++.+ +..++.++...+... +...-....+ ..|.... ....+|+||||+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~l~~~~~-~~f~~~~-----~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSAIRSGEM-QRFRQFY-----RNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHHHhcchH-HHHHHHc-----ccCCEEEEcchhhh
Confidence 468999999999999999999876 567777777655421 1000000000 1121111 13459999999988
Q ss_pred chh
Q 012525 403 TKK 405 (461)
Q Consensus 403 ~~~ 405 (461)
..+
T Consensus 215 ~~k 217 (445)
T PRK12422 215 SGK 217 (445)
T ss_pred cCC
Confidence 754
No 236
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.07 E-value=1e-05 Score=82.51 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~ 362 (461)
..+++|+|++|||||+||.+||+++ +..++.+...++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 3679999999999999999999987 5666666666544
No 237
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=3.7e-05 Score=78.93 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC-----------------------ceEEecchhhhhcCcccccHHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV-----------------------PFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~-----------------------pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~ 381 (461)
++.+||.||.|+||+++|+.+|+.+.+ +|+.+....- .+.+ . .+.++.+...
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I--~-vdqiR~l~~~ 99 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE--GKSI--T-VEQIRQCNRL 99 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC--CCcC--C-HHHHHHHHHH
Confidence 356999999999999999999997743 1222221100 0001 1 2334544444
Q ss_pred hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 382 a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
...........|++||++|+|... ..|+||+.||+
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 134 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE 134 (319)
T ss_pred HhhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC
Confidence 333333445679999999999988 89999999994
No 238
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.05 E-value=5.4e-06 Score=84.44 Aligned_cols=93 Identities=27% Similarity=0.352 Sum_probs=59.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec-chhhhhcCcccccHHHHHHHHHHhhc--hhhhc-cCceEEEEcCccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD-ATTLTQAGYVGEDVESILYKLLAQAE--FNVEA-AQQGMVYIDEVDK 401 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~-~s~l~~~g~vGe~~e~~L~~lf~~a~--~~v~~-a~~gVLfIDEID~ 401 (461)
.|+|||||||||||+...+.|+.+..+.=.-+ ..++..+.-.|-++...-...|.... ..+.. +....++|||+|+
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADa 142 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADA 142 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhH
Confidence 58999999999999999999998866411111 11222222233333333333343222 11111 3556899999999
Q ss_pred cchhhhccccccccchHHHHHHHHHHHhCce
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTE 432 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~ 432 (461)
|+.. +|++|.+.+|...
T Consensus 143 MT~~--------------AQnALRRviek~t 159 (360)
T KOG0990|consen 143 MTRD--------------AQNALRRVIEKYT 159 (360)
T ss_pred hhHH--------------HHHHHHHHHHHhc
Confidence 9998 9999999888544
No 239
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=86.17 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=45.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-----CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
.+++|+|++|||||+|++++++++ +..++.+++.++... +... .... ...+......+ ....+|+||||+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~-~~~~-l~~~-~~~~~~~~~~~--~~~dvLiIDDiq 216 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK-AVDI-LQKT-HKEIEQFKNEI--CQNDVLIIDDVQ 216 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHH-HHHh-hhHHHHHHHHh--ccCCEEEEeccc
Confidence 458999999999999999999865 356677777765531 1100 0000 01111111111 134499999999
Q ss_pred ccchh
Q 012525 401 KITKK 405 (461)
Q Consensus 401 ~L~~~ 405 (461)
.+..+
T Consensus 217 ~l~~k 221 (450)
T PRK14087 217 FLSYK 221 (450)
T ss_pred cccCC
Confidence 88754
No 240
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.99 E-value=3.5e-05 Score=75.25 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=22.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..++|+||+|+||||+++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4588999999999999999999876
No 241
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.97 E-value=5.2e-05 Score=74.42 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=50.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
....+.||+|||||.+.+.||+.++..++.++|++..+ ...+.+++..... .+.-+.|||+++|..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~~~-----~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGLAQ-----SGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHHHH-----HT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHHhh-----cCchhhhhhhhhhhHH
Confidence 34678999999999999999999999999999998664 3445555543222 3568999999999987
No 242
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=5.8e-05 Score=76.52 Aligned_cols=91 Identities=21% Similarity=0.136 Sum_probs=58.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecch--------h---hhhcCccc-ccHHHHHHHHHHhhchhhhccCce
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT--------T---LTQAGYVG-EDVESILYKLLAQAEFNVEAAQQG 392 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s--------~---l~~~g~vG-e~~e~~L~~lf~~a~~~v~~a~~g 392 (461)
++.+||+||.|+||+++|.++|+.+-+.-..-.|. + +...+... -. .+.++.+..............
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~-idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHS-IETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCc-HHHHHHHHHHHhhCccCCCce
Confidence 36689999999999999999999775421000110 1 10000000 01 233455554444433345667
Q ss_pred EEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 393 VLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
|++||++|+|+.. .+|+||+.||+
T Consensus 98 v~ii~~ad~mt~~--------------AaNaLLK~LEE 121 (290)
T PRK05917 98 IYIIHEADRMTLD--------------AISAFLKVLED 121 (290)
T ss_pred EEEEechhhcCHH--------------HHHHHHHHhhc
Confidence 9999999999998 89999999994
No 243
>PRK06620 hypothetical protein; Validated
Probab=97.91 E-value=3.7e-05 Score=74.35 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
..++|+||+|||||+|++++++..+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~ 71 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAY 71 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCE
Confidence 568999999999999999999987653
No 244
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.91 E-value=4.9e-05 Score=82.72 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=27.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
+-+||+||+||||||++++||++++..+++-.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 35789999999999999999999998777643
No 245
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.91 E-value=1.8e-05 Score=81.82 Aligned_cols=63 Identities=35% Similarity=0.601 Sum_probs=49.2
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC--C
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--V 351 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~--~ 351 (461)
-++||.+|+++--..+.. + ... ...++.|||.||||||||.||-+||++|+ .
T Consensus 40 G~VGQ~~AReAaGvIv~m----i-k~g---------------------k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dv 93 (450)
T COG1224 40 GLVGQEEAREAAGVIVKM----I-KQG---------------------KMAGRGILIVGPPGTGKTALAMGIARELGEDV 93 (450)
T ss_pred cccchHHHHHhhhHHHHH----H-HhC---------------------cccccEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 379999999977665531 1 111 13358899999999999999999999996 6
Q ss_pred ceEEecchhhh
Q 012525 352 PFVIADATTLT 362 (461)
Q Consensus 352 pfv~i~~s~l~ 362 (461)
||+.++.+++-
T Consensus 94 PF~~isgsEiY 104 (450)
T COG1224 94 PFVAISGSEIY 104 (450)
T ss_pred Cceeeccceee
Confidence 99999988765
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.87 E-value=4.8e-05 Score=67.11 Aligned_cols=32 Identities=47% Similarity=0.657 Sum_probs=25.2
Q ss_pred EEEEccCCCchHHHHHHHHHhc---CCceEEecch
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s 359 (461)
++|+|+||+|||++++.++..+ +.+++.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 7899999999999999998876 3455554443
No 247
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.87 E-value=2.8e-05 Score=70.99 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=34.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCc--
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~p-- 352 (461)
.+|.++..+.|...+. ......+.+++|+|++|+|||+|.+.+.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~----------------------------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~ 53 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD----------------------------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGG 53 (185)
T ss_dssp -TT-HHHHHHHHHTTG----------------------------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHH----------------------------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 4788888888777661 0011224779999999999999999888766433
Q ss_pred -eEEecchhh
Q 012525 353 -FVIADATTL 361 (461)
Q Consensus 353 -fv~i~~s~l 361 (461)
++.+++...
T Consensus 54 ~~~~~~~~~~ 63 (185)
T PF13191_consen 54 YVISINCDDS 63 (185)
T ss_dssp -EEEEEEETT
T ss_pred EEEEEEEecc
Confidence 555555433
No 248
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.86 E-value=8.3e-05 Score=75.62 Aligned_cols=118 Identities=20% Similarity=0.206 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHH
Q 012525 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (461)
Q Consensus 262 ~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtL 341 (461)
+..+.+.....+..||..+|++.|...-. +.+. ++ .....++||+|+++.|||++
T Consensus 23 ~~~eRI~~i~~~rWIgY~~A~~~L~~L~~-----Ll~~--P~------------------~~Rmp~lLivG~snnGKT~I 77 (302)
T PF05621_consen 23 SDEERIAYIRADRWIGYPRAKEALDRLEE-----LLEY--PK------------------RHRMPNLLIVGDSNNGKTMI 77 (302)
T ss_pred CHHHHHHHHhcCCeecCHHHHHHHHHHHH-----HHhC--Cc------------------ccCCCceEEecCCCCcHHHH
Confidence 34444556666778999999998876542 1110 00 01237899999999999999
Q ss_pred HHHHHHhcC---------CceEEecchhhhhc-----------CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 342 AKTLARHVN---------VPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 342 AraLA~~l~---------~pfv~i~~s~l~~~-----------g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
++.+.+... .|++.+.+..--.. +..... ...+..+.......+...+-.+|+|||++.
T Consensus 78 i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 78 IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 999997552 36666665321110 000000 000111111111223334566999999999
Q ss_pred cchh
Q 012525 402 ITKK 405 (461)
Q Consensus 402 L~~~ 405 (461)
+...
T Consensus 157 lLaG 160 (302)
T PF05621_consen 157 LLAG 160 (302)
T ss_pred Hhcc
Confidence 7654
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.83 E-value=6.1e-05 Score=75.54 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=64.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC-ce--EEecchhhhhcCcccccHHHHHHHHHHh----hch---hhhccCceEE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV-PF--VIADATTLTQAGYVGEDVESILYKLLAQ----AEF---NVEAAQQGMV 394 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~-pf--v~i~~s~l~~~g~vGe~~e~~L~~lf~~----a~~---~v~~a~~gVL 394 (461)
..++||.||+|||||++++.+-+.+.. .+ ..+.++..+. ...++..++. ..+ .....+..|+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 478999999999999999887665543 22 2344433332 2223322211 111 1122455699
Q ss_pred EEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc-eeeecCCeEEEecCCCC
Q 012525 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA-VSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 395 fIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r~~~rd~IiI~TsNid 455 (461)
||||++.-..+.- +.......|.++||.+-...... ..+...+..+|++.|..
T Consensus 105 fiDDlN~p~~d~y--------gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~ 158 (272)
T PF12775_consen 105 FIDDLNMPQPDKY--------GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT 158 (272)
T ss_dssp EEETTT-S---TT--------S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST
T ss_pred EecccCCCCCCCC--------CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC
Confidence 9999996554421 11225677778898555544333 33444578888888753
No 250
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.81 E-value=1.2e-05 Score=86.08 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=88.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHH
Q 012525 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (461)
Q Consensus 265 ~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAra 344 (461)
+.+.+.+...|+|.+++|+.|..++.- .......+..++ ...-||+|+|.||+.||.|.+.
T Consensus 334 ekLa~SiAPEIyGheDVKKaLLLlLVG------------------gvd~~~~dGMKI-RGdINicLmGDPGVAKSQLLky 394 (721)
T KOG0482|consen 334 EKLAASIAPEIYGHEDVKKALLLLLVG------------------GVDKSPGDGMKI-RGDINICLMGDPGVAKSQLLKY 394 (721)
T ss_pred HHHHHhhchhhccchHHHHHHHHHhhC------------------CCCCCCCCCcee-ecceeEEecCCCchhHHHHHHH
Confidence 347777788899999999999887731 011111111111 1246899999999999999999
Q ss_pred HHHhcCCceEEecchhhhhcCcccccHHHHHHH----HHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHH
Q 012525 345 LARHVNVPFVIADATTLTQAGYVGEDVESILYK----LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 345 LA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~----lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
+.+..-...+..--.. + =+|-. ...++. ...-.-+.+..+.+||-.|||+|+|.+. -
T Consensus 395 i~rlapRgvYTTGrGS---S-GVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------D 455 (721)
T KOG0482|consen 395 ISRLAPRGVYTTGRGS---S-GVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------D 455 (721)
T ss_pred HHhcCcccceecCCCC---C-ccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------h
Confidence 9987754333211110 0 01111 011111 0111123455678999999999999987 3
Q ss_pred HHHHHHHHhCceeeeecc--eeeecCCeEEEecCCC
Q 012525 421 QQALLKMLEGTETKTFAA--VSKVSRDNLYIKTSGL 454 (461)
Q Consensus 421 ~~aLL~~LEg~~v~i~~~--~r~~~rd~IiI~TsNi 454 (461)
..++-+.||...++|--. .-....++-++++.|.
T Consensus 456 RtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANP 491 (721)
T KOG0482|consen 456 RTAIHEVMEQQTISIAKAGINTTLNARTSILAAANP 491 (721)
T ss_pred hHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCc
Confidence 467788888766654322 1111224555666654
No 251
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=6.4e-05 Score=80.77 Aligned_cols=99 Identities=34% Similarity=0.563 Sum_probs=78.1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
.+.+++++||||||||++++++|.. +..+..++...+. .+++++. +..++.+|..+... .++++++||+|.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~~----~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEKL----APSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHHh----CCCeEeechhhhcc
Confidence 3578999999999999999999999 6655666666666 4577776 77888888777654 55899999999999
Q ss_pred hhhhccccccccchHHHHHHHHHHHhCce
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEGTE 432 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg~~ 432 (461)
+.+.. ........+...|+..|++..
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~~~ 115 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDGLK 115 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccccc
Confidence 99765 333344568999999999766
No 252
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.72 E-value=3.1e-05 Score=66.51 Aligned_cols=31 Identities=42% Similarity=0.777 Sum_probs=28.4
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
|+|.|+||+||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988877766
No 253
>PRK09087 hypothetical protein; Validated
Probab=97.70 E-value=9.5e-05 Score=72.10 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=24.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
..++|+||+|+|||+|++++++..+..++
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i 73 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI 73 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe
Confidence 34899999999999999999988765433
No 254
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.68 E-value=0.0002 Score=78.60 Aligned_cols=62 Identities=26% Similarity=0.436 Sum_probs=44.2
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ ++|++++++.|...+......+ ......++|.||||+|||+||+.||+.+
T Consensus 74 fF~d-~yGlee~ieriv~~l~~Aa~gl-------------------------~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 74 AFEE-FYGMEEAIEQIVSYFRHAAQGL-------------------------EEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred chhc-ccCcHHHHHHHHHHHHHHHHhc-------------------------CCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 4454 7999999999988874332221 0123568899999999999999999876
Q ss_pred C-CceEEec
Q 012525 350 N-VPFVIAD 357 (461)
Q Consensus 350 ~-~pfv~i~ 357 (461)
. .+++.+.
T Consensus 128 e~~~~Y~~k 136 (644)
T PRK15455 128 ERVPIYVLK 136 (644)
T ss_pred HhCcceeec
Confidence 3 3555443
No 255
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.66 E-value=0.00019 Score=76.26 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=61.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh--cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH--VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~--l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
..|+++.||+|||||+||.+|+.. +-.- ..++.+.+ +..+.....+.+ ...-+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~L-------------f~~L~~~~lg~v--~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG-GTITVAKL-------------FYNISTRQIGLV--GRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHH-------------HHHHHHHHHhhh--ccCCEEEEEcCCCC
Confidence 478999999999999999998765 2110 11222222 222222222221 24458999999986
Q ss_pred chhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCC
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSG 453 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsN 453 (461)
.-.+. +.+++.|...|+.+.+............++++.-.|
T Consensus 273 p~~~~----------~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 273 KFAKP----------KELIGILKNYMESGSFTRGDETKSSDASFVFLGNVP 313 (449)
T ss_pred cCCch----------HHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccC
Confidence 65421 237889999999888887544322222455544333
No 256
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00011 Score=67.89 Aligned_cols=36 Identities=31% Similarity=0.619 Sum_probs=30.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~ 362 (461)
..|||++|-|||||||+|..||+.++.+++.+ +++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 47899999999999999999999999887654 4444
No 257
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.63 E-value=5.8e-05 Score=68.37 Aligned_cols=34 Identities=29% Similarity=0.589 Sum_probs=30.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
+..|+|+|+|||||||+|+.||+.++.+|+..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~ 37 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDH 37 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 4679999999999999999999999999886553
No 258
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.57 E-value=5.5e-05 Score=89.29 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=83.7
Q ss_pred ccccCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhc-CcccccHHHHHHH--HHHhhchhhhccCceEEEEc
Q 012525 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDVESILYK--LLAQAEFNVEAAQQGMVYID 397 (461)
Q Consensus 321 ~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~-g~vGe~~e~~L~~--lf~~a~~~v~~a~~gVLfID 397 (461)
++...+++||.|.||+|||.|..+||+..|..+++++.++.++- +.+|.+..-.-.. .+..+...-...+++-|+||
T Consensus 1539 Amqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLD 1618 (4600)
T COG5271 1539 AMQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLD 1618 (4600)
T ss_pred HHhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEee
Confidence 34457899999999999999999999999999999998754431 1233221111001 11123333334577889999
Q ss_pred CccccchhhhccccccccchHHHHHHHHHHHh-CceeeeecceeeecC--CeEEEecCCCCc
Q 012525 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTETKTFAAVSKVSR--DNLYIKTSGLDS 456 (461)
Q Consensus 398 EID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE-g~~v~i~~~~r~~~r--d~IiI~TsNid~ 456 (461)
|++-.+.. ++.-|-..|| .++..|++....... ++.+.+|.|...
T Consensus 1619 EiNLaSQS--------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~ 1666 (4600)
T COG5271 1619 EINLASQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQD 1666 (4600)
T ss_pred hhhhhHHH--------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchh
Confidence 99966555 8888888899 566777777433333 799999998653
No 259
>PHA00729 NTP-binding motif containing protein
Probab=97.57 E-value=0.00014 Score=71.33 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=23.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.+|+|+|+||||||+||.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 260
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00012 Score=68.93 Aligned_cols=35 Identities=34% Similarity=0.708 Sum_probs=32.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~ 360 (461)
.+|+|.|++|+||||+.++||+.++.+|+..|...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~I 37 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEI 37 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHH
Confidence 57999999999999999999999999999887653
No 261
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.00065 Score=68.98 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=55.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceE-------E-ecchhhhhc---C--cc---ccc-HHHHHHHHHHhhchhhhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV-------I-ADATTLTQA---G--YV---GED-VESILYKLLAQAEFNVEA 388 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv-------~-i~~s~l~~~---g--~v---Ge~-~e~~L~~lf~~a~~~v~~ 388 (461)
+.+||+|| +||+++|+.+|+.+.+.-. . -+|..+... + ++ |.. -.+.++.+..........
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 56899996 6899999999987743110 0 011111100 0 11 110 023445555444433334
Q ss_pred cCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 389 a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
+...|++||++|+|... ..|+||+.||+
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE 130 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIEE 130 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhcC
Confidence 56679999999999998 89999999994
No 262
>PHA02774 E1; Provisional
Probab=97.55 E-value=0.00042 Score=76.04 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=62.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEE-ecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI-ADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~-i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
...++|+||||||||++|-+|++.++..++. ++... .-| |+.+. .--|++|||+-.-.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqpl~----------d~ki~vlDD~t~~~ 492 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQPLA----------DAKIALLDDATHPC 492 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cchhc----------cCCEEEEecCcchH
Confidence 3679999999999999999999998654432 44311 101 11111 22389999993221
Q ss_pred hhhhccccccccchHHHHHHHHHHHhCceeeeecce--eeecCCeEEEecCCCCcCc
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAV--SKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~--r~~~rd~IiI~TsNid~e~ 458 (461)
-. -+...|..+|+|..+.+..+- ...-+-.=+|.|||++...
T Consensus 493 w~-------------y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~ 536 (613)
T PHA02774 493 WD-------------YIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKA 536 (613)
T ss_pred HH-------------HHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCccc
Confidence 11 145578889999977765541 1111234567899988653
No 263
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.52 E-value=0.00014 Score=68.06 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=20.5
Q ss_pred cEEEEccCCCchHHHHHHHHHhc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l 349 (461)
|++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 264
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.51 E-value=2.7e-05 Score=83.41 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=66.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHH
Q 012525 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 267 l~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
+.+.+..-|+|.+++|+.+.-+|. ...++.- ++. -.....-||||.|.|||.|+.|.+-+-
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLF-------gGsrK~L------pDg------~~lRGDINVLLLGDPgtAKSQlLKFvE 385 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLF-------GGSRKRL------PDG------VTLRGDINVLLLGDPGTAKSQLLKFVE 385 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhh-------cCccccC------CCc------ceeccceeEEEecCCchhHHHHHHHHH
Confidence 455556668999999999987773 1111110 000 011234789999999999999999887
Q ss_pred HhcCCceEEec----chhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 347 RHVNVPFVIAD----ATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 347 ~~l~~pfv~i~----~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
+..-.-++.-- ++.|+.+ .... ....-|-..-+.+..+.+||+.|||+|+|-+.
T Consensus 386 kvsPIaVYTSGKGSSAAGLTAS-V~RD----~~tReFylEGGAMVLADgGVvCIDEFDKMre~ 443 (729)
T KOG0481|consen 386 KVSPIAVYTSGKGSSAAGLTAS-VIRD----PSTREFYLEGGAMVLADGGVVCIDEFDKMRED 443 (729)
T ss_pred hcCceEEEecCCCcccccceee-EEec----CCcceEEEecceEEEecCCEEEeehhhccCch
Confidence 76544333111 1111111 0000 00111212223345579999999999999877
No 265
>PRK13947 shikimate kinase; Provisional
Probab=97.49 E-value=0.0001 Score=67.38 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=30.1
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
+|+|.|+||||||++|+.||+.++.+|+..+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~ 35 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE 35 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh
Confidence 699999999999999999999999999876653
No 266
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.46 E-value=0.00066 Score=68.51 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=55.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC---c--------------------------eEEecchhhhhcCcccccHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV---P--------------------------FVIADATTLTQAGYVGEDVESILY 376 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~---p--------------------------fv~i~~s~l~~~g~vGe~~e~~L~ 376 (461)
.|+|+|||+|+||-|.+.+|-+++.. . .++++.++ .|....-.++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD------aG~~DRvViQ 108 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD------AGNYDRVVIQ 108 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh------cCcccHHHHH
Confidence 78999999999999999999887722 1 11222222 2222244445
Q ss_pred HHHHhhchh----hh-ccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCc
Q 012525 377 KLLAQAEFN----VE-AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 377 ~lf~~a~~~----v~-~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~ 431 (461)
+++.+.... .. ...-.|++|.|+|.|+.+ +|.+|.+-||..
T Consensus 109 ellKevAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkY 154 (351)
T KOG2035|consen 109 ELLKEVAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKY 154 (351)
T ss_pred HHHHHHHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHH
Confidence 554432111 11 112349999999999998 999999999944
No 267
>PRK13948 shikimate kinase; Provisional
Probab=97.46 E-value=0.00025 Score=67.18 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=33.6
Q ss_pred cccCCcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 322 ~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
+..+.+|+|.|.+|+||||+++.||+.++.+|+..|..
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ 44 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY 44 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH
Confidence 34568899999999999999999999999999977743
No 268
>PRK07261 topology modulation protein; Provisional
Probab=97.45 E-value=0.00033 Score=65.24 Aligned_cols=34 Identities=35% Similarity=0.648 Sum_probs=29.8
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecchh
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~ 360 (461)
.|+++|++|+||||||+.|++.++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 3899999999999999999999999888776543
No 269
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.00075 Score=67.54 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=55.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCce-----EE-ecchhhhhc---C--ccc-----ccHHHHHHHHHHhhchh-hh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF-----VI-ADATTLTQA---G--YVG-----EDVESILYKLLAQAEFN-VE 387 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pf-----v~-i~~s~l~~~---g--~vG-----e~~e~~L~~lf~~a~~~-v~ 387 (461)
++.+||+|+.|+||..+|.++|+.+-+.- -. .+|..+... + ++. -. .+.++.+....... ++
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~-id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK-KEDALSIINKLNRPSVE 85 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC-HHHHHHHHHHHccCchh
Confidence 46799999999999999999998763310 00 001111100 0 000 01 23333333322211 12
Q ss_pred ccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 388 ~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.....|++||++|+|... ..|+||+.||+
T Consensus 86 ~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE 114 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE 114 (261)
T ss_pred cCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC
Confidence 235679999999999998 89999999994
No 270
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.42 E-value=0.00022 Score=77.56 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=87.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH-HHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHH
Q 012525 267 ICKGLDKFVIGQEKAKKVLSVAVYNHY-KRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (461)
Q Consensus 267 l~~~Ld~~VvGqd~aK~~L~~al~~~~-kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraL 345 (461)
+.+.|..-|.|.+.+|+.|.-++.--. +.+.+..+ -...-||||.|.|-|.||.|.|.+
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGsh--------------------lRGDINiLlvGDPSvAKSQLLRyV 354 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSH--------------------LRGDINILLVGDPSVAKSQLLRYV 354 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCce--------------------eccceeEEEecCchHHHHHHHHHH
Confidence 445566779999999999987774111 11111111 122478999999999999999988
Q ss_pred HHhcCCce---------EEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccc
Q 012525 346 ARHVNVPF---------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (461)
Q Consensus 346 A~~l~~pf---------v~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s 416 (461)
-+....-. |-+.++-.++ .-.| |. .+- .+....+..||+.|||+|+|+.-
T Consensus 355 LntAplAI~TTGRGSSGVGLTAAVTtD-~eTG---ER---RLE---AGAMVLADRGVVCIDEFDKMsDi----------- 413 (818)
T KOG0479|consen 355 LNTAPLAIATTGRGSSGVGLTAAVTTD-QETG---ER---RLE---AGAMVLADRGVVCIDEFDKMSDI----------- 413 (818)
T ss_pred HhcccccccccCCCCCCccceeEEeec-cccc---hh---hhh---cCceEEccCceEEehhcccccch-----------
Confidence 76552211 0111111110 0111 21 222 12334578999999999999986
Q ss_pred hHHHHHHHHHHHhCceeeeecceee--ecCCeEEEecCCC
Q 012525 417 GEGVQQALLKMLEGTETKTFAAVSK--VSRDNLYIKTSGL 454 (461)
Q Consensus 417 ~~~v~~aLL~~LEg~~v~i~~~~r~--~~rd~IiI~TsNi 454 (461)
-.-++-+.||...++|--...+ ...++-+|++.|.
T Consensus 414 ---DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANP 450 (818)
T KOG0479|consen 414 ---DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450 (818)
T ss_pred ---hHHHHHHHHhcceEEeEeccchhhhccceeeeeecCc
Confidence 3468889999888776544222 2237888888875
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=97.42 E-value=0.00013 Score=67.81 Aligned_cols=33 Identities=39% Similarity=0.700 Sum_probs=30.1
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
.|+++|+||+||||||+.|++.++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999998877754
No 272
>PRK03839 putative kinase; Provisional
Probab=97.42 E-value=0.00014 Score=67.51 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=29.0
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|+|.|+||+||||+++.||+.++.+|+.++-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~ 33 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhh
Confidence 38999999999999999999999999987663
No 273
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.00082 Score=68.49 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=55.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC-----------c--eEEecchhhhhcCcccccHHHHHHHHHHhhchhh-hccCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV-----------P--FVIADATTLTQAGYVGEDVESILYKLLAQAEFNV-EAAQQ 391 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~-----------p--fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v-~~a~~ 391 (461)
+.+||+|+.|.||+++|+.+++.+.+ | ++.++... . . -. ...++.+........ +....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~-~--i~-vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K-D--LS-KSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C-c--CC-HHHHHHHHHHhccCCcccCCc
Confidence 55789999999999999999998732 1 11221000 0 0 11 234444444443322 22467
Q ss_pred eEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 392 gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.|++||++|+|... .+++||+.||+
T Consensus 92 KvvII~~~e~m~~~--------------a~NaLLK~LEE 116 (299)
T PRK07132 92 KILIIKNIEKTSNS--------------LLNALLKTIEE 116 (299)
T ss_pred eEEEEecccccCHH--------------HHHHHHHHhhC
Confidence 79999999999887 89999999994
No 274
>PRK00625 shikimate kinase; Provisional
Probab=97.38 E-value=0.00016 Score=67.81 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=30.4
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
+|+|.|.||+||||+++.||+.++.+|+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~ 34 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDL 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHH
Confidence 589999999999999999999999999888754
No 275
>PF05729 NACHT: NACHT domain
Probab=97.37 E-value=0.00073 Score=60.13 Aligned_cols=78 Identities=18% Similarity=0.384 Sum_probs=43.6
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCC--------c-eEEecchhhhhcCcccccHHHHHHHHHHhh--------chhhhcc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNV--------P-FVIADATTLTQAGYVGEDVESILYKLLAQA--------EFNVEAA 389 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~--------p-fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a--------~~~v~~a 389 (461)
-++|+|++|+|||++++.++..+.. + ++.+...+....... ......+...+... .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 4789999999999999999976621 1 223333333322111 11122222211111 1112235
Q ss_pred CceEEEEcCccccchh
Q 012525 390 QQGMVYIDEVDKITKK 405 (461)
Q Consensus 390 ~~gVLfIDEID~L~~~ 405 (461)
...+|+||.+|.+...
T Consensus 81 ~~~llilDglDE~~~~ 96 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQ 96 (166)
T ss_pred CceEEEEechHhcccc
Confidence 6679999999998875
No 276
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.37 E-value=0.00018 Score=64.13 Aligned_cols=32 Identities=41% Similarity=0.742 Sum_probs=28.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
+|+|+|++|+||||+|+.||+.++.+++..+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~ 32 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDE 32 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 48999999999999999999999999886663
No 277
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.34 E-value=0.00044 Score=64.82 Aligned_cols=25 Identities=44% Similarity=0.743 Sum_probs=23.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.+++|+||.|+|||+|++.+.+.+.
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 6799999999999999999999883
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0011 Score=62.10 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..|+++|+||+||||++..+|+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 568999999999999999999776
No 279
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.33 E-value=0.0022 Score=66.45 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=62.6
Q ss_pred cccCCcEEEEccCCCchHHHHHHHHHhcCCce-EEecchhhh----hc--Cccccc--HHHHHHHHHHhhchhhhccCce
Q 012525 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF-VIADATTLT----QA--GYVGED--VESILYKLLAQAEFNVEAAQQG 392 (461)
Q Consensus 322 ~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pf-v~i~~s~l~----~~--g~vGe~--~e~~L~~lf~~a~~~v~~a~~g 392 (461)
...++++.|+|+.|.|||+|.-.+...+...- .++...... +. .+.|+. +..+-.++.. +-.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~---------~~~ 132 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA---------ETR 132 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh---------cCC
Confidence 34568999999999999999988888774421 112111111 00 011221 0111111221 234
Q ss_pred EEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCcCCC
Q 012525 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKTLWP 461 (461)
Q Consensus 393 VLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~l~P 461 (461)
||.|||+.-- |...--++..|+..|- .+..++|+|||..++.+++
T Consensus 133 vLCfDEF~Vt-----------DI~DAMiL~rL~~~Lf-------------~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 133 VLCFDEFEVT-----------DIADAMILGRLLEALF-------------ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred EEEeeeeeec-----------ChHHHHHHHHHHHHHH-------------HCCcEEEEeCCCChHHhcc
Confidence 9999998721 1122237777777664 2356899999999988874
No 280
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.33 E-value=0.0012 Score=63.34 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=58.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
..++|.|+-|+|||++.+.|+... +.-...... . .+.+..+. ..-|+.|||++.+..+
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~-----~---kd~~~~l~----------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD-----D---KDFLEQLQ----------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCccccCC-----C---cHHHHHHH----------HhHheeHHHHhhcchh
Confidence 347899999999999999997662 111111111 0 11111111 1227899999988855
Q ss_pred hhccccccccchHHHHHHHHHHHhCceeeeec--c--eeeecCCeEEEecCCCC
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEGTETKTFA--A--VSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~--~--~r~~~rd~IiI~TsNid 455 (461)
-+++|-.+|......... . ....++..++|+|+|.+
T Consensus 111 --------------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 111 --------------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred --------------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 456777777754443332 2 45566789999999975
No 281
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.30 E-value=0.00051 Score=68.23 Aligned_cols=83 Identities=18% Similarity=0.309 Sum_probs=48.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc------eEEecch------hhhhc-------CcccccHHH---HHHHHHHhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------FVIADAT------TLTQA-------GYVGEDVES---ILYKLLAQA 382 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p------fv~i~~s------~l~~~-------g~vGe~~e~---~L~~lf~~a 382 (461)
+..++|.||+|+|||||++.|++.+... ++.+... ++... .-.++.... ........+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4668999999999999999999877542 2221111 11110 001122222 222333344
Q ss_pred chhhhccCceEEEEcCccccchhhh
Q 012525 383 EFNVEAAQQGMVYIDEVDKITKKAE 407 (461)
Q Consensus 383 ~~~v~~a~~gVLfIDEID~L~~~R~ 407 (461)
.......+..+|||||+.++....+
T Consensus 96 ~~~~~~G~~vll~iDei~r~a~a~~ 120 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLARAYN 120 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhhhhhh
Confidence 4333345677999999999987643
No 282
>PRK10536 hypothetical protein; Provisional
Probab=97.30 E-value=0.0021 Score=64.42 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..+++.||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.29 E-value=0.0015 Score=62.23 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=47.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCc---ccccHHHHHHHHHHhhchhh-----hccCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGY---VGEDVESILYKLLAQAEFNV-----EAAQQGMV 394 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~---vGe~~e~~L~~lf~~a~~~v-----~~a~~gVL 394 (461)
+.++|.|++|||||++.+.+++.+ +..++.+..+.-....+ .+.. ...+..++....... ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 457889999999999999988765 44555544432221000 0000 011111111111100 02344699
Q ss_pred EEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 395 fIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
||||+-.+... ....|+..++.
T Consensus 98 iVDEasmv~~~--------------~~~~ll~~~~~ 119 (196)
T PF13604_consen 98 IVDEASMVDSR--------------QLARLLRLAKK 119 (196)
T ss_dssp EESSGGG-BHH--------------HHHHHHHHS-T
T ss_pred EEecccccCHH--------------HHHHHHHHHHh
Confidence 99999988877 67777777764
No 284
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.28 E-value=0.0004 Score=70.60 Aligned_cols=64 Identities=30% Similarity=0.455 Sum_probs=47.1
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC--C
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--V 351 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~--~ 351 (461)
-++||+.|++.--..+..... . ...++.|||.||||||||.||-+|+++++ .
T Consensus 39 g~vGQ~~AReAagiivdlik~-----K---------------------kmaGravLlaGppgtGKTAlAlaisqELG~kv 92 (456)
T KOG1942|consen 39 GFVGQENAREAAGIIVDLIKS-----K---------------------KMAGRAVLLAGPPGTGKTALALAISQELGPKV 92 (456)
T ss_pred ccccchhhhhhhhHHHHHHHh-----h---------------------hccCcEEEEecCCCCchhHHHHHHHHHhCCCC
Confidence 379999999876554421110 0 12357899999999999999999999996 5
Q ss_pred ceEEecchhhhh
Q 012525 352 PFVIADATTLTQ 363 (461)
Q Consensus 352 pfv~i~~s~l~~ 363 (461)
||.-+..+++-.
T Consensus 93 PFcpmvgSEvyS 104 (456)
T KOG1942|consen 93 PFCPMVGSEVYS 104 (456)
T ss_pred Ccccccchhhhh
Confidence 888777776553
No 285
>PRK06217 hypothetical protein; Validated
Probab=97.26 E-value=0.00027 Score=66.06 Aligned_cols=32 Identities=31% Similarity=0.610 Sum_probs=29.2
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|+|.|.+|+||||+|++|++.++.+++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 48999999999999999999999999887664
No 286
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.26 E-value=0.00021 Score=62.99 Aligned_cols=29 Identities=41% Similarity=0.723 Sum_probs=24.7
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
|+|+|+||+||||+|+.+++.++..++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~ 30 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQ 30 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeH
Confidence 78999999999999999999998544433
No 287
>PRK14532 adenylate kinase; Provisional
Probab=97.25 E-value=0.00026 Score=65.94 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=27.2
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
+|+|.|+||+||||+|+.||+.++.+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999877655
No 288
>PRK04296 thymidine kinase; Provisional
Probab=97.23 E-value=0.0011 Score=62.66 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=22.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhc---CCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i 356 (461)
-+|++||+|+||||++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 37899999999999998887655 4444444
No 289
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.22 E-value=0.0022 Score=69.78 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=28.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
+-+||+||+||||||..+.|+++++..+++-.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 45789999999999999999999998777555
No 290
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.00039 Score=63.42 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=29.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~ 362 (461)
.-|+|+|+||+||||+|+.|++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 3478999999999999999999986556666655444
No 291
>PRK13949 shikimate kinase; Provisional
Probab=97.21 E-value=0.00031 Score=65.41 Aligned_cols=34 Identities=38% Similarity=0.620 Sum_probs=30.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
.+|+|+|+||+||||+++.||+.++.+|+..+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~ 35 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFF 35 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHH
Confidence 3589999999999999999999999999887743
No 292
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.15 E-value=0.0005 Score=67.15 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHH
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+..+||||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 346699999999999999999973
No 293
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.14 E-value=0.00077 Score=71.18 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=48.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc------eEEecch---h---hh--------hcCcccccHHHHHH---HHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------FVIADAT---T---LT--------QAGYVGEDVESILY---KLLAQ 381 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p------fv~i~~s---~---l~--------~~g~vGe~~e~~L~---~lf~~ 381 (461)
+...+|.||+|+|||+|++.|++.+... ++.+... + +. .+.+ -+..+..++ ..+..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHHHH
Confidence 3558889999999999999999866431 1111111 1 11 0111 112122222 34444
Q ss_pred hchhhhccCceEEEEcCccccchhhh
Q 012525 382 AEFNVEAAQQGMVYIDEVDKITKKAE 407 (461)
Q Consensus 382 a~~~v~~a~~gVLfIDEID~L~~~R~ 407 (461)
+.......+..+||||||+++....+
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHHHHH
Confidence 55444556778999999999988644
No 294
>PRK14530 adenylate kinase; Provisional
Probab=97.14 E-value=0.00045 Score=66.17 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=27.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4699999999999999999999999887744
No 295
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.13 E-value=0.00044 Score=63.89 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.8
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
|+|+|+||+||||+|+.||+.++..++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998766554
No 296
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.13 E-value=0.00043 Score=60.98 Aligned_cols=30 Identities=37% Similarity=0.739 Sum_probs=28.1
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
|+|.|++|+||||+|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 297
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.13 E-value=0.0011 Score=60.20 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=26.4
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
|+|.||+|+||||+|+.|++.++..++..+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcc
Confidence 4789999999999999999999877765444
No 298
>PRK13946 shikimate kinase; Provisional
Probab=97.12 E-value=0.00045 Score=64.76 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=31.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
+.+|+|+|.+|+|||++++.||+.++.+|+..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4679999999999999999999999999987775
No 299
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.11 E-value=0.00054 Score=63.84 Aligned_cols=35 Identities=37% Similarity=0.745 Sum_probs=31.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..+|+|.|++|+||||+++.||+.++.+|+..+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~ 38 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE 38 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCch
Confidence 35799999999999999999999999999877753
No 300
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.11 E-value=0.00048 Score=63.91 Aligned_cols=30 Identities=40% Similarity=0.739 Sum_probs=26.8
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
|+|+|+||+||||+|+.||+.++.+++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 899999999999999999999988776543
No 301
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.10 E-value=0.0014 Score=68.04 Aligned_cols=54 Identities=31% Similarity=0.423 Sum_probs=40.0
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+++.++|.+++++.|...+.. +.+ ..+..++-++|.||+|+|||+|++.|.+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~-------AA~------------------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKS-------AAQ------------------GLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccccCcHHHHHHHHHHHHH-------HHh------------------ccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 444589999999988886631 111 112345678999999999999999999866
No 302
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.10 E-value=0.00054 Score=62.76 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=30.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
.+++|+|.+|+|||++|+.||+.++.+|+..+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~ 36 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW 36 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 4589999999999999999999999999876643
No 303
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.08 E-value=0.00051 Score=61.50 Aligned_cols=30 Identities=40% Similarity=0.789 Sum_probs=26.3
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
++|+|+||+||||+|+.|++.++..++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D 31 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD 31 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCc
Confidence 689999999999999999999988776443
No 304
>PRK14531 adenylate kinase; Provisional
Probab=97.08 E-value=0.00056 Score=64.01 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=27.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
..|+|+|+||+||||+++.||+.++.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4599999999999999999999999877654
No 305
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.06 E-value=0.0028 Score=64.60 Aligned_cols=35 Identities=34% Similarity=0.640 Sum_probs=31.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..+|+|+|.+|+|||++++.||+.++.+|+.++..
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~ 167 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE 167 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHH
Confidence 46799999999999999999999999999976643
No 306
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.0024 Score=63.18 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=46.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC--------CceEEecchhhhhcCcccccHHHHHHH--HHH---hh---chhhhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN--------VPFVIADATTLTQAGYVGEDVESILYK--LLA---QA---EFNVEA 388 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~--------~pfv~i~~s~l~~~g~vGe~~e~~L~~--lf~---~a---~~~v~~ 388 (461)
..|.||.|||+|||||+.|-||+.+. ..+..++...-......|......-+. +++ .+ ...+..
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 46799999999999999999998663 345566655333223333321111000 000 00 011233
Q ss_pred cCceEEEEcCccccch
Q 012525 389 AQQGMVYIDEVDKITK 404 (461)
Q Consensus 389 a~~gVLfIDEID~L~~ 404 (461)
..|-|+++|||.....
T Consensus 217 m~PEViIvDEIGt~~d 232 (308)
T COG3854 217 MSPEVIIVDEIGTEED 232 (308)
T ss_pred cCCcEEEEeccccHHH
Confidence 4677999999986544
No 307
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.04 E-value=0.0011 Score=60.50 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=24.1
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEecchhhh
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~ 362 (461)
|+|+|.+|||||||++.|++. +.+++.-.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999999 8887744444444
No 308
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.03 E-value=0.0015 Score=60.03 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=23.2
Q ss_pred EEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
+|++||||||||+++..++... +.+++.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999998876543 445554443
No 309
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.01 E-value=0.0026 Score=57.78 Aligned_cols=35 Identities=29% Similarity=0.571 Sum_probs=28.2
Q ss_pred EEEEccCCCchHHHHHHHHHhc---CCceEEecchhhh
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~ 362 (461)
++|.|.||+||||+|+.|++.+ +...+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 7899999999999999999988 5556666654443
No 310
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.01 E-value=0.00064 Score=62.99 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=28.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..|+|.|+||+||||+|+.|++.+..+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4589999999999999999999988777655443
No 311
>PHA02624 large T antigen; Provisional
Probab=96.96 E-value=0.0017 Score=71.70 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=55.0
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
.++.+||+||||||||+++.+|++.++...+.++...-...=|. .-+. ..-+++||++-.-.
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL--------~pl~----------D~~~~l~dD~t~~~ 491 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFEL--------GCAI----------DQFMVVFEDVKGQP 491 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHh--------hhhh----------hceEEEeeeccccc
Confidence 35679999999999999999999999665666664432211011 1111 33478899986444
Q ss_pred hhhhccccccccchHHHHHHHHHHHhCc-eeeee
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEGT-ETKTF 436 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg~-~v~i~ 436 (461)
-.......+.... -..-|+..|||. .+++.
T Consensus 492 ~~~~~Lp~G~~~d---Nl~~lRn~LDG~V~v~ld 522 (647)
T PHA02624 492 ADNKDLPSGQGMN---NLDNLRDYLDGSVPVNLE 522 (647)
T ss_pred cccccCCcccccc---hhhHHHhhcCCCCccccc
Confidence 3211000011100 246889999998 55543
No 312
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.96 E-value=0.0016 Score=68.86 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=48.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc------eEEecch------hhhhc-------CcccccHHH---HHHHHHHhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------FVIADAT------TLTQA-------GYVGEDVES---ILYKLLAQA 382 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p------fv~i~~s------~l~~~-------g~vGe~~e~---~L~~lf~~a 382 (461)
+..++|.||+|+|||+|++.|++.+... ++.+... ++... .-.++.... ....+...+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 4669999999999999999999976432 2211101 11100 001111111 122333344
Q ss_pred chhhhccCceEEEEcCccccchhhh
Q 012525 383 EFNVEAAQQGMVYIDEVDKITKKAE 407 (461)
Q Consensus 383 ~~~v~~a~~gVLfIDEID~L~~~R~ 407 (461)
.......+..|||||||+++....+
T Consensus 248 e~~~~~GkdVVLlIDEitR~arAqr 272 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITRLARAYN 272 (415)
T ss_pred HHHHHcCCCeEEEEEChhHHHHHHH
Confidence 4444455677999999999987643
No 313
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0024 Score=60.40 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.|+++|.|||||||+++.|+ .++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48899999999999999999 8988877666
No 314
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.89 E-value=0.0018 Score=54.60 Aligned_cols=23 Identities=52% Similarity=0.628 Sum_probs=20.0
Q ss_pred cEEEEccCCCchHHHHHHHHHhc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l 349 (461)
++++.||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999988877655
No 315
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.88 E-value=0.0045 Score=65.05 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=46.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC-----ceEE--ecc-----hhhhhc--Cccc-----ccHHH---HHHHHHHhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV-----PFVI--ADA-----TTLTQA--GYVG-----EDVES---ILYKLLAQA 382 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~-----pfv~--i~~-----s~l~~~--g~vG-----e~~e~---~L~~lf~~a 382 (461)
+..++|.||+|||||+|++.|++.+.. .++. +.. .++... +.+. +.... ....+...+
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999999999987632 1121 111 111100 0000 11111 112233344
Q ss_pred chhhhccCceEEEEcCccccchhh
Q 012525 383 EFNVEAAQQGMVYIDEVDKITKKA 406 (461)
Q Consensus 383 ~~~v~~a~~gVLfIDEID~L~~~R 406 (461)
.......+..||++||+.++....
T Consensus 213 e~f~~~GkdVVLvlDsltr~A~A~ 236 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLTRLARAY 236 (380)
T ss_pred HHHHHcCCCEEEEEeCcHHHHHHH
Confidence 444445677799999999987753
No 316
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.88 E-value=0.0023 Score=62.71 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=27.5
Q ss_pred EEEEccCCCchHHHHHHHHHhc---CCceEEecchhh
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l 361 (461)
|+|+|.||+||||+|+.|++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 455666655444
No 317
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.88 E-value=0.0011 Score=65.13 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=29.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
..|+|.||||+||||+|+.||+.++.+++.++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 459999999999999999999999988776554
No 318
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.84 E-value=0.0041 Score=66.67 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s 359 (461)
..-+||+|+||+|||+|+..+|..+ +.++++++..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3568999999999999999998755 4566666654
No 319
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.82 E-value=0.003 Score=64.94 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=31.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ 363 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~ 363 (461)
..|+|.|++|+|||||++.|++.++.+++.-...++..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~ 200 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVE 200 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHH
Confidence 46899999999999999999999999887666554443
No 320
>PRK14528 adenylate kinase; Provisional
Probab=96.81 E-value=0.0012 Score=62.16 Aligned_cols=32 Identities=34% Similarity=0.700 Sum_probs=27.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.+|++.||||+||||+|+.||+.++.+++.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~ 33 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTG 33 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCC
Confidence 35899999999999999999999998876543
No 321
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0012 Score=62.36 Aligned_cols=28 Identities=43% Similarity=0.924 Sum_probs=24.6
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
.|+|.|+||+||||+|+.||+.++.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999766544
No 322
>PRK14974 cell division protein FtsY; Provisional
Probab=96.79 E-value=0.019 Score=59.63 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.|++|+||||++..||..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999988888765
No 323
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.78 E-value=0.0081 Score=55.86 Aligned_cols=38 Identities=34% Similarity=0.539 Sum_probs=32.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ 363 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~ 363 (461)
..|+|+|.+|+||||||++|.+.+ +.+.+.++...+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 458899999999999999999877 67888888887774
No 324
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.77 E-value=0.0014 Score=60.42 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=26.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.-|+|.|+||+||||+|+.|++.++..++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3478999999999999999999998765544
No 325
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.77 E-value=0.0025 Score=65.87 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=21.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+++.|.||||||.||-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 348899999999999999999987
No 326
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.0017 Score=68.79 Aligned_cols=69 Identities=17% Similarity=0.329 Sum_probs=43.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC-----CceEEecchhhhhcCcccccHHHHHH---HHHHhhchhhhccCceEEEEc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN-----VPFVIADATTLTQAGYVGEDVESILY---KLLAQAEFNVEAAQQGMVYID 397 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~-----~pfv~i~~s~l~~~g~vGe~~e~~L~---~lf~~a~~~v~~a~~gVLfID 397 (461)
..++|+|++|.|||+|++|++.++. ..++.+........ ++ ..... ..|.... .--+|+||
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~-~v----~a~~~~~~~~Fk~~y------~~dlllID 182 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTND-FV----KALRDNEMEKFKEKY------SLDLLLID 182 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHH-HH----HHHHhhhHHHHHHhh------ccCeeeec
Confidence 5699999999999999999998662 24666666554421 11 11111 1111111 12289999
Q ss_pred Cccccchh
Q 012525 398 EVDKITKK 405 (461)
Q Consensus 398 EID~L~~~ 405 (461)
+|+.+..+
T Consensus 183 Diq~l~gk 190 (408)
T COG0593 183 DIQFLAGK 190 (408)
T ss_pred hHhHhcCC
Confidence 99998877
No 327
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.01 Score=59.02 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=22.9
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.-|.|.||+|||||||.+.||...
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345668899999999999999999654
No 328
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.74 E-value=0.0011 Score=56.66 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.9
Q ss_pred EEEEccCCCchHHHHHHHHHhc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l 349 (461)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 329
>PRK02496 adk adenylate kinase; Provisional
Probab=96.74 E-value=0.0014 Score=60.86 Aligned_cols=30 Identities=33% Similarity=0.739 Sum_probs=26.8
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.++|.|+||+||||+|+.||+.++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999998877654
No 330
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.72 E-value=0.012 Score=70.79 Aligned_cols=110 Identities=27% Similarity=0.327 Sum_probs=79.7
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhc-CcccccH----------HHHHHHHHHhhchhhhccCc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDV----------ESILYKLLAQAEFNVEAAQQ 391 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~-g~vGe~~----------e~~L~~lf~~a~~~v~~a~~ 391 (461)
...-++||.||+-+|||.+.+-+|++.+..||+++-.+-++. .|+|.-+ |..+-..+ .++
T Consensus 886 ~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl---------R~G 956 (4600)
T COG5271 886 LSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL---------RRG 956 (4600)
T ss_pred hcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHH---------hcC
Confidence 345789999999999999999999999999999998643321 2333211 11222211 133
Q ss_pred eEEEEcCccccchhhhccccccccchHHHHHHHHHHHh-Cceeeeecc-eeeecC-CeEEEecCCCC
Q 012525 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTETKTFAA-VSKVSR-DNLYIKTSGLD 455 (461)
Q Consensus 392 gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE-g~~v~i~~~-~r~~~r-d~IiI~TsNid 455 (461)
--|+|||.+-.... ++.+|-++|| .+++.|++. .--+|. ++.+.+|.|..
T Consensus 957 yWIVLDELNLApTD--------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNpp 1009 (4600)
T COG5271 957 YWIVLDELNLAPTD--------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPP 1009 (4600)
T ss_pred cEEEeeccccCcHH--------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCC
Confidence 36889999976666 9999999999 678888877 344455 79999999954
No 331
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.72 E-value=0.0015 Score=62.39 Aligned_cols=29 Identities=38% Similarity=0.706 Sum_probs=26.3
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
|+|+|+||+||||+|+.||+.++.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 79999999999999999999998877654
No 332
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.72 E-value=0.0041 Score=62.49 Aligned_cols=76 Identities=25% Similarity=0.278 Sum_probs=40.2
Q ss_pred EEEEccCCCchHHHHHHHHHhc---CCceEEecchhhh--hcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT--QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~--~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
|+|+|-||+|||++|+.|++.+ +..++.++...+. ...|.-...|+..+..+..+..... .+..||++|....+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 7899999999999999999875 4566666655444 2223223336666655543322221 24468888986655
Q ss_pred ch
Q 012525 403 TK 404 (461)
Q Consensus 403 ~~ 404 (461)
-.
T Consensus 83 Kg 84 (270)
T PF08433_consen 83 KG 84 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 333
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.0063 Score=68.03 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=30.7
Q ss_pred cCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc
Q 012525 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA 438 (461)
Q Consensus 389 a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~ 438 (461)
.+|.||+|||+-...... |..-++.+|-+.|++..+.++.-
T Consensus 621 r~P~VLILDEATSALDae---------SE~lVq~aL~~~~~~rTVlvIAH 661 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAE---------SEYLVQEALDRLMQGRTVLVIAH 661 (716)
T ss_pred cCCCEEEEechhhhcchh---------hHHHHHHHHHHhhcCCeEEEEeh
Confidence 478999999998776652 22347888889999977766655
No 334
>PRK06547 hypothetical protein; Provisional
Probab=96.71 E-value=0.0015 Score=61.31 Aligned_cols=33 Identities=42% Similarity=0.525 Sum_probs=28.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
..|++.|++|+||||+|+.|++.++.+++.++.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~ 48 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLDD 48 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeecccc
Confidence 457888999999999999999999887775543
No 335
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.71 E-value=0.0019 Score=67.77 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=26.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s 359 (461)
..-++|+|+||+|||+|+..+|..+ +.+++.++..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3568999999999999999998655 2355555543
No 336
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.71 E-value=0.0079 Score=58.21 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=26.3
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
..+..++++|+||+|||+++..++... +.+.+.++.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 335778999999999999999996532 445544443
No 337
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.68 E-value=0.0044 Score=75.43 Aligned_cols=116 Identities=23% Similarity=0.261 Sum_probs=77.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhc-CcccccHHHHHHH-HHHhhchhhhccCceEEEEcCccccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDVESILYK-LLAQAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~-g~vGe~~e~~L~~-lf~~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
..+||.||+++|||.+++-+|+..+..+++++-.+.++. .|+|..+.....+ .|......-..-++..+|+||++...
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 469999999999999999999999999998887644321 1332110000000 00000000011256789999999877
Q ss_pred hhhhccccccccchHHHHHHHHHHHhC-ceeeeecceeeecC--CeEEEecCCCC
Q 012525 404 KKAESLNISRDVSGEGVQQALLKMLEG-TETKTFAAVSKVSR--DNLYIKTSGLD 455 (461)
Q Consensus 404 ~~R~~~~~~~~~s~~~v~~aLL~~LEg-~~v~i~~~~r~~~r--d~IiI~TsNid 455 (461)
.. ++.+|.++++. +++.+++..+-... ++++.+|-|..
T Consensus 521 ~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808|consen 521 HD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred hH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence 77 89999999995 88888887444333 68888888865
No 338
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.68 E-value=0.011 Score=59.35 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=46.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
..|+||.|..|+||++++|..|-.++..++.+..+. +|.-.+....++.++..+.. ..++.+++|+|-+
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~q 99 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDSQ 99 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECCC
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCcc
Confidence 378999999999999999999988888888777542 23223334555555544332 2356788887744
No 339
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.68 E-value=0.0018 Score=62.03 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=26.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.|+++|+||+||||+|+.||+.++.+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999877654
No 340
>PLN02199 shikimate kinase
Probab=96.67 E-value=0.0031 Score=64.33 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=31.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..+|+|.|.+|+|||++++.||+.++.+|+..+..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~l 136 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL 136 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHH
Confidence 47899999999999999999999999999877753
No 341
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0016 Score=61.06 Aligned_cols=28 Identities=39% Similarity=0.643 Sum_probs=26.3
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
|.+.|+|||||||+|+.||+.++.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 342
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.62 E-value=0.0027 Score=60.09 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~ 360 (461)
..-++|+||||+|||+++..++... +...+.++...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4668899999999999999888644 44566666653
No 343
>PLN02200 adenylate kinase family protein
Probab=96.61 E-value=0.002 Score=63.18 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
+..|+|.|+||+||||+|+.||+.++.+++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 456889999999999999999999987654
No 344
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.58 E-value=0.029 Score=60.19 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=27.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecch
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s 359 (461)
.+..|+|+|++|+||||++..||..+ +..+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 35779999999999999999999866 3444444443
No 345
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.58 E-value=0.0071 Score=57.53 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.6
Q ss_pred cEEEEccCCCchHHHHHHHHHhcC
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
-++|.||+|+||||++++|+..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999988774
No 346
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.012 Score=67.74 Aligned_cols=96 Identities=21% Similarity=0.311 Sum_probs=62.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC----------CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN----------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMV 394 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~----------~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVL 394 (461)
+.|-+|.|+||+|||.+++-+|+... ..++.++...+..-...-.+++..++.+..+... ...+-||
T Consensus 208 k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 208 KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc---CCCcEEE
Confidence 36789999999999999999998662 2456666665443222223457777777765442 2356689
Q ss_pred EEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 395 fIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
||||++-+...... .+...+.+.|-.++.
T Consensus 285 figelh~lvg~g~~------~~~~d~~nlLkp~L~ 313 (898)
T KOG1051|consen 285 FLGELHWLVGSGSN------YGAIDAANLLKPLLA 313 (898)
T ss_pred EecceeeeecCCCc------chHHHHHHhhHHHHh
Confidence 99999998877322 112234555555555
No 347
>PRK04182 cytidylate kinase; Provisional
Probab=96.57 E-value=0.0022 Score=58.49 Aligned_cols=30 Identities=40% Similarity=0.609 Sum_probs=27.4
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.|+|.|++|+||||+|+.||+.++.+++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 388999999999999999999999988764
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.032 Score=58.96 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=22.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..|+|+||+|+||||++..||..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998755
No 349
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.53 E-value=0.0044 Score=67.99 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=31.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..|+|.|.+|+||||+++.||+.++.+|+.+|..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ 40 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE 40 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence 5699999999999999999999999999988864
No 350
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.014 Score=55.19 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l 361 (461)
+..|.|+|++|+||||||++|++.+ +...+.++...+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 3568899999999999999999977 334555655433
No 351
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.49 E-value=0.0023 Score=60.98 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEccCCCchHHHHHHHHHhc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l 349 (461)
+++.|+||+|||++.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999885
No 352
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.46 E-value=0.013 Score=66.54 Aligned_cols=90 Identities=22% Similarity=0.326 Sum_probs=50.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---C--CceEEecchhhhhc---CcccccHHHHHHHHHHhhchh-----hh-ccC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---N--VPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFN-----VE-AAQ 390 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~--~pfv~i~~s~l~~~---g~vGe~~e~~L~~lf~~a~~~-----v~-~a~ 390 (461)
...++|.|+|||||||+++++.+.+ + .+++.+..+--... ...|.. ...+..++...... .. ...
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~-a~Tih~lL~~~~~~~~~~~~~~~~~ 416 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLT-ASTIHRLLGYGPDTFRHNHLEDPID 416 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCc-cccHHHHhhccCCccchhhhhcccc
Confidence 3568999999999999999997755 3 33333332211100 011211 12233333321110 00 124
Q ss_pred ceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 391 ~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
..+|+|||+-.+... ....|+..+.
T Consensus 417 ~~llIvDEaSMvd~~--------------~~~~Ll~~~~ 441 (720)
T TIGR01448 417 CDLLIVDESSMMDTW--------------LALSLLAALP 441 (720)
T ss_pred CCEEEEeccccCCHH--------------HHHHHHHhCC
Confidence 569999999988776 6677777665
No 353
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.46 E-value=0.0029 Score=57.36 Aligned_cols=30 Identities=40% Similarity=0.680 Sum_probs=27.3
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
|+|.|++|+|||++|+.||+.++.+++..+
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~~ 32 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecHH
Confidence 789999999999999999999999887653
No 354
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.43 E-value=0.0086 Score=62.34 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=28.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC---ceEEecchhhhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV---PFVIADATTLTQ 363 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~---pfv~i~~s~l~~ 363 (461)
+.++++.|+.|||||+|.++|...+.. .++.+..+-+.+
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAA 63 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHH
Confidence 467899999999999999999887743 344444444443
No 355
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.42 E-value=0.0052 Score=68.47 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=58.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC----------CceEEecchhhhhc---------CcccccH-----HHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN----------VPFVIADATTLTQA---------GYVGEDV-----ESILYKLLAQ 381 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~----------~pfv~i~~s~l~~~---------g~vGe~~-----e~~L~~lf~~ 381 (461)
.-+.+.|-||||||.+++.+-+.|. .+|+++++..+... .+.|+.. -..|...|.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~- 501 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT- 501 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc-
Confidence 4678999999999999988877553 47889998777643 1122211 112222222
Q ss_pred hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 382 a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
..-.....+||+|||.|.|... -|..|..+++
T Consensus 502 --~~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fd 533 (767)
T KOG1514|consen 502 --VPKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFD 533 (767)
T ss_pred --cCCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhc
Confidence 1112356789999999998876 5778888877
No 356
>PRK14527 adenylate kinase; Provisional
Probab=96.42 E-value=0.0026 Score=59.73 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=26.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.-|+|+||||+||||+|+.||+.++...+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 4589999999999999999999988765433
No 357
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.41 E-value=0.0028 Score=63.23 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=25.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-CCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-~~pfv~ 355 (461)
..|+|.|+||+||||+|+.|++.+ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 347899999999999999999998 554443
No 358
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.41 E-value=0.012 Score=62.45 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=27.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
..|+|.|++|||||||+++||+.++..++.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999999887654
No 359
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.40 E-value=0.018 Score=55.20 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=24.9
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc----CCceEEecc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADA 358 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~ 358 (461)
..+..+|+.|+||||||+++..++... +.+.+.+..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 445779999999999999998766322 555554443
No 360
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.39 E-value=0.0032 Score=58.96 Aligned_cols=30 Identities=33% Similarity=0.600 Sum_probs=25.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
..++|.||+|+|||||++.|+..++.+|+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 458999999999999999999988765543
No 361
>PLN02674 adenylate kinase
Probab=96.39 E-value=0.0034 Score=62.35 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=27.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.+|+|.||||+||+|+|+.||+.++.+++.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 5699999999999999999999998766533
No 362
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.035 Score=58.40 Aligned_cols=26 Identities=42% Similarity=0.557 Sum_probs=22.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..++|+||+|+||||++..||..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999753
No 363
>PRK01184 hypothetical protein; Provisional
Probab=96.34 E-value=0.0036 Score=58.11 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=25.1
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.|+|+|+||+||||+|+ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999998 788888887665
No 364
>PRK08233 hypothetical protein; Provisional
Probab=96.34 E-value=0.0042 Score=56.86 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=25.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC-CceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN-VPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~-~pfv~i~ 357 (461)
.-|.+.|+||+||||+|+.|++.+. ..++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3478899999999999999999885 3444443
No 365
>PRK14526 adenylate kinase; Provisional
Probab=96.32 E-value=0.0039 Score=60.37 Aligned_cols=29 Identities=34% Similarity=0.643 Sum_probs=25.5
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
+++|+|+||+||||+|+.||+.++.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48899999999999999999998876553
No 366
>PRK04040 adenylate kinase; Provisional
Probab=96.32 E-value=0.0037 Score=59.34 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=26.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc--CCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV--NVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l--~~pfv~i 356 (461)
..|+|+|.||+||||+++.|++.+ +..++..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 458999999999999999999999 5665543
No 367
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.31 E-value=0.035 Score=55.94 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.||+|+||||++..||..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998755
No 368
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.31 E-value=0.014 Score=53.83 Aligned_cols=35 Identities=31% Similarity=0.559 Sum_probs=27.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~ 360 (461)
..|+|.|+||+||||+|+.|+..+ +..++.++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 468899999999999999999987 33345455443
No 369
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.012 Score=56.00 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=32.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ 363 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~ 363 (461)
..|.|+|.+|+||||+|.+|.+.| +...+.++...+..
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 568899999999999999999877 66788888876663
No 370
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.30 E-value=0.017 Score=55.78 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999984
No 371
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.30 E-value=0.016 Score=54.16 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
.+|+.|+||+|||++|..++..++.+++.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988776655543
No 372
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.29 E-value=0.0091 Score=57.27 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s 359 (461)
..-++|+|+||+|||++|..+|..+ +...+.++..
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4668999999999999999998644 5566666665
No 373
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.29 E-value=0.003 Score=56.91 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.7
Q ss_pred EEccCCCchHHHHHHHHHhcCCceEE
Q 012525 330 LMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 330 L~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
|.||||+||||+|+.||+.++..++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999875543
No 374
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.28 E-value=0.0048 Score=48.98 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=20.7
Q ss_pred EEEEccCCCchHHHHHHHHHhc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l 349 (461)
+.+.|++|+|||+++++|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999986
No 375
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.25 E-value=0.031 Score=54.59 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCcEEEEccCCCchHHHHHHHH-Hhc--CCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLA-RHV--NVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA-~~l--~~pfv~i~ 357 (461)
...++|.|++|||||++|..++ ..+ +...+.+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4678999999999999975554 333 34444444
No 376
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.25 E-value=0.0038 Score=56.53 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
..|+|.|+.|+||||++|.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 568899999999999999999998763
No 377
>PF13245 AAA_19: Part of AAA domain
Probab=96.24 E-value=0.0067 Score=49.51 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=17.6
Q ss_pred cEEEEccCCCchH-HHHHHHHHhc
Q 012525 327 NVLLMGPTGSGKT-LLAKTLARHV 349 (461)
Q Consensus 327 ~VLL~GPPGTGKT-tLAraLA~~l 349 (461)
.+++.|||||||| ++++.++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3556999999999 6666666665
No 378
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.23 E-value=0.024 Score=54.26 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..++|.||+|+||||.+-.||..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 458999999999999988887655
No 379
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.18 E-value=0.037 Score=52.92 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.-++|+||.|+||||+.|.|+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5678999999999999999985
No 380
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.17 E-value=0.011 Score=67.32 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=43.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc---CcccccHHHHHHHHH-HhhchhhhccCceEEEEc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLL-AQAEFNVEAAQQGMVYID 397 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~---g~vGe~~e~~L~~lf-~~a~~~v~~a~~gVLfID 397 (461)
..-++|.|++||||||+++++...+ +..++.+..+..... ...|.. ...+..+. .............+|+||
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~-a~Ti~~~~~~~~~~~~~~~~~~llIvD 446 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIE-SRTLASLEYAWANGRDLLSDKDVLVID 446 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCc-eeeHHHHHhhhccCcccCCCCcEEEEE
Confidence 4567899999999999999997654 445554433322211 011111 11112221 111111111355699999
Q ss_pred Cccccchh
Q 012525 398 EVDKITKK 405 (461)
Q Consensus 398 EID~L~~~ 405 (461)
|+-.+...
T Consensus 447 EasMv~~~ 454 (744)
T TIGR02768 447 EAGMVGSR 454 (744)
T ss_pred CcccCCHH
Confidence 99987766
No 381
>PRK06696 uridine kinase; Validated
Probab=96.15 E-value=0.0054 Score=59.19 Aligned_cols=33 Identities=36% Similarity=0.450 Sum_probs=27.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
.-|.+.|++|+||||+|+.|++.+ +.+++.+..
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~ 58 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASI 58 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecc
Confidence 457899999999999999999998 556666443
No 382
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.15 E-value=0.089 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.||+|+||||++..||..+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4678899999999999999999866
No 383
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.15 E-value=0.0065 Score=56.06 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC---ceEEecchhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV---PFVIADATTL 361 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~---pfv~i~~s~l 361 (461)
+..|+|.|++|+||||+|+.|++.+.. ..+.++...+
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 467899999999999999999998852 2444554444
No 384
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.13 E-value=0.021 Score=54.21 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA 346 (461)
+.++|+||.|+||||+.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 385
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.12 E-value=0.0049 Score=57.62 Aligned_cols=34 Identities=32% Similarity=0.581 Sum_probs=29.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.+..++++|++|+||||++++|+++++.+|+.-+
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccc
Confidence 3457899999999999999999999999987554
No 386
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.12 E-value=0.079 Score=56.76 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
+..|+|.|++|+||||++..||..+ +..+..+++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 4568899999999999999999766 445555554
No 387
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.12 E-value=0.0078 Score=59.16 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|.|+|++|+|||+||+.+++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEEcCCcCCcceeeeecccc
Confidence 56889999999999999999977
No 388
>PRK14529 adenylate kinase; Provisional
Probab=96.10 E-value=0.0049 Score=60.40 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=25.6
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
+|+|.||||+||||+|+.||+.++.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4899999999999999999999988765
No 389
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.09 E-value=0.021 Score=54.17 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..++|+||.|+||||+.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5689999999999999999994
No 390
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.06 E-value=0.04 Score=65.16 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=37.1
Q ss_pred cCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecC--CeEEEe
Q 012525 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSR--DNLYIK 450 (461)
Q Consensus 389 a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~r--d~IiI~ 450 (461)
.+|.||+|||+-..... .|.+-+|++|=+.+++....+..-.....+ |.|.|.
T Consensus 1143 RnPkILLLDEATSALDs---------eSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDS---------ESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVL 1197 (1228)
T ss_pred cCCCeeeeeccchhhhh---------hhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEE
Confidence 47889999999877765 234558999999999977666555322222 666654
No 391
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.014 Score=62.66 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=61.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC----
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~---- 350 (461)
+.|.+.....+.+.+..|.-. .....+.+.|-||||||.+...+-..+.
T Consensus 152 l~gRe~e~~~v~~F~~~hle~---------------------------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~ 204 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLEL---------------------------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK 204 (529)
T ss_pred ccchHHHHHHHHHHHHhhhhc---------------------------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcc
Confidence 678888888888888654321 1236689999999999998876654332
Q ss_pred C-ceEEecchhhhhcCc-------------ccccHHHHHHHHHHhhchhhhc-cCceEEEEcCccccchh
Q 012525 351 V-PFVIADATTLTQAGY-------------VGEDVESILYKLLAQAEFNVEA-AQQGMVYIDEVDKITKK 405 (461)
Q Consensus 351 ~-pfv~i~~s~l~~~g~-------------vGe~~e~~L~~lf~~a~~~v~~-a~~gVLfIDEID~L~~~ 405 (461)
. ..+.++|..+....- .+...+..+...|.. .+.. ...-||++||+|.|...
T Consensus 205 ~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr 271 (529)
T KOG2227|consen 205 SPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITR 271 (529)
T ss_pred cceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHH---HHhcccceEEEEechhhHHhhc
Confidence 2 347888887664311 111111111112211 1111 23558999999999865
No 392
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.04 E-value=0.024 Score=52.01 Aligned_cols=32 Identities=34% Similarity=0.451 Sum_probs=25.1
Q ss_pred EEEEccCCCchHHHHHHHHHhc---CCceEEecch
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s 359 (461)
++|.|+||+|||++++.+|..+ +..++.+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998765 4455555544
No 393
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.01 E-value=0.03 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.6
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.|+.|+|||||+++|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678899999999999999999876
No 394
>PLN02459 probable adenylate kinase
Probab=96.01 E-value=0.007 Score=60.70 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=27.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.+++|.||||+||||+|+.||+.++..++.+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 5689999999999999999999998776543
No 395
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.00 E-value=0.014 Score=61.69 Aligned_cols=70 Identities=20% Similarity=0.387 Sum_probs=44.5
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
.++|+||-.|||||+++.+.+.+...++.++..++.... ......++.+..... . ....||||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~~~~~----~-~~~yifLDEIq~v~~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYIELKE----R-EKSYIFLDEIQNVPD 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHHHhhc----c-CCceEEEecccCchh
Confidence 689999999999999999998886656666666555321 111112222221111 1 456899999996554
No 396
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.99 E-value=0.0012 Score=65.28 Aligned_cols=27 Identities=44% Similarity=0.742 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
..+|++.|++|+||||+++++.+.+..
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred ceEEEEECCCccccchHHHHHhhhccc
Confidence 378999999999999999999987744
No 397
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.99 E-value=0.018 Score=56.04 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=26.1
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
.|.|.||+|+||||+|+.||+.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 47899999999999999999999987664
No 398
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.98 E-value=0.053 Score=52.03 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..-+.|+|+||+|||++|..++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 466889999999999999999754
No 399
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.95 E-value=0.045 Score=50.93 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=28.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~ 362 (461)
.-++|.|++|+||||+|+.|+..+ +...+.++...+.
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 568899999999999999999887 3345566655544
No 400
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.95 E-value=0.039 Score=58.05 Aligned_cols=61 Identities=26% Similarity=0.274 Sum_probs=46.2
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 272 DKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 272 d~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
...|.+.+..++.|...+.+ + -...+.+|+|+|..|||||.+.+.+-+.++.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~----------------~------------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~ 56 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGN----------------N------------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL 56 (438)
T ss_pred ccCccchHHHHHHHHHHhCC----------------C------------CcccceeEEEeccCCCchhHHHHHHHhhcCC
Confidence 34467778788877776620 0 0123578899999999999999999999999
Q ss_pred ceEEecchh
Q 012525 352 PFVIADATT 360 (461)
Q Consensus 352 pfv~i~~s~ 360 (461)
+.+.+++-+
T Consensus 57 ~~vw~n~~e 65 (438)
T KOG2543|consen 57 ENVWLNCVE 65 (438)
T ss_pred cceeeehHH
Confidence 988887754
No 401
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.91 E-value=0.056 Score=53.16 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.8
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHH
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..+..+.++||+|+|||||.|+|..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456789999999999999999985
No 402
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.90 E-value=0.022 Score=58.88 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..+||.||+|+||||+.+++.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5689999999999999999998765
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.90 E-value=0.0077 Score=60.18 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=21.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..++|.|++|+||||+++++...+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 4589999999999999999977664
No 404
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.88 E-value=0.032 Score=56.17 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=27.0
Q ss_pred cccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 316 DNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 316 ~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+.....-..+..+-|.|++||||||++|.|.+...
T Consensus 30 d~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 30 DGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred cceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 33333344457788999999999999999998774
No 405
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.88 E-value=0.0091 Score=57.26 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=25.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
..+++.|.||+||||+|+.||+.++..++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 45899999999999999999999887543
No 406
>PLN02165 adenylate isopentenyltransferase
Probab=95.86 E-value=0.0081 Score=62.20 Aligned_cols=33 Identities=36% Similarity=0.536 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
+..++|.||+|+|||+||..||+.++..++..+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 356899999999999999999999987666554
No 407
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=95.86 E-value=0.012 Score=53.89 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=24.8
Q ss_pred CCCchHHHHHHHHHhcCCceEEecchh
Q 012525 334 TGSGKTLLAKTLARHVNVPFVIADATT 360 (461)
Q Consensus 334 PGTGKTtLAraLA~~l~~pfv~i~~s~ 360 (461)
||+||||+++.||+.++.+|+.+|...
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i 27 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEI 27 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHH
Confidence 799999999999999999999888754
No 408
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.86 E-value=0.0075 Score=55.63 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.8
Q ss_pred cEEEEccCCCchHHHHHHHHHhcC
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
-++|.||+|+|||||+++|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999775
No 409
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.85 E-value=0.029 Score=57.44 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCce
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
+..|++.|++|||||++|+.||+.++.+.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35689999999999999999999998874
No 410
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.85 E-value=0.027 Score=63.87 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.5
Q ss_pred cccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 322 ~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
-..+..|.+.|++|+|||||+|.|....
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445669999999999999999999755
No 411
>PF13479 AAA_24: AAA domain
Probab=95.84 E-value=0.015 Score=56.00 Aligned_cols=20 Identities=55% Similarity=0.904 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTL 345 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraL 345 (461)
-.+||||+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46999999999999998888
No 412
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.81 E-value=0.041 Score=51.98 Aligned_cols=37 Identities=27% Similarity=0.544 Sum_probs=31.3
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhh
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ 363 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~ 363 (461)
-|+|.|++=+|||+||++|.+.+..||+.+....+..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 4899999999999999999999999999888776654
No 413
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.80 E-value=0.041 Score=56.78 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=45.1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcC---cccc-----------cHHHHHHHHHHhhchhh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGE-----------DVESILYKLLAQAEFNV 386 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g---~vGe-----------~~e~~L~~lf~~a~~~v 386 (461)
...-++|+||||||||+||..++... +.+.+.++........ ..|. ..+..+.. ....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~----~~~li 129 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEI----AETLV 129 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHH----HHHHh
Confidence 34678899999999999988776543 4566666654322110 0111 11222211 11122
Q ss_pred hccCceEEEEcCccccchh
Q 012525 387 EAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 387 ~~a~~gVLfIDEID~L~~~ 405 (461)
......+|+||-|..+.+.
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 2345679999999988764
No 414
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.78 E-value=0.018 Score=62.45 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=30.3
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
+|+|+|++|+||||+++.||+.++.+|+..+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~ 34 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEE 34 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence 589999999999999999999999999977754
No 415
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.78 E-value=0.059 Score=50.80 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...+.|.||.|+|||||.+.|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4567899999999999999999866
No 416
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.77 E-value=0.025 Score=66.22 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=50.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCc---ccccHHHHHHHHHHh-hchhhhccCceEEEEc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGY---VGEDVESILYKLLAQ-AEFNVEAAQQGMVYID 397 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~---vGe~~e~~L~~lf~~-a~~~v~~a~~gVLfID 397 (461)
...++|.|.+||||||+.+++.+.+ +..++-+..+......+ .|.. ...+..++.. ...........|||||
T Consensus 362 ~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~-a~TI~sll~~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 362 RDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIA-SRTIASLEHGWGQGRDLLTSRDVLVID 440 (988)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcc-hhhHHHHHhhhcccccccccCcEEEEE
Confidence 3457899999999999988776544 55555444433221111 1211 2223333211 1111112245699999
Q ss_pred CccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 398 EID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
|+-.+... ....|+...+
T Consensus 441 EASMv~~~--------------~m~~LL~~a~ 458 (988)
T PRK13889 441 EAGMVGTR--------------QLERVLSHAA 458 (988)
T ss_pred CcccCCHH--------------HHHHHHHhhh
Confidence 99977766 5666666554
No 417
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.76 E-value=0.011 Score=55.52 Aligned_cols=29 Identities=34% Similarity=0.670 Sum_probs=25.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
..++|+|++|+||||+++.|+..++..++
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i 32 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFI 32 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 45899999999999999999998876544
No 418
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.74 E-value=0.049 Score=54.11 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=25.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
...-++++|+||||||++|..+|... +.+.+.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 35678999999999999998876532 345444443
No 419
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.74 E-value=0.013 Score=63.14 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s 359 (461)
..-+||.|+||+|||+|+..++..+ +.++++++..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 3568999999999999999987654 2455555553
No 420
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.73 E-value=0.056 Score=60.39 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..-++|.|+|||||||+++.+...+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4568899999999999987776544
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.72 E-value=0.034 Score=52.20 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 012525 328 VLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~ 347 (461)
++|+||.|.|||++.|.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 422
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=95.69 E-value=0.01 Score=68.42 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=57.0
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccH------HHHHHHHHH--hhchhhhccCceEEEEcC
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDV------ESILYKLLA--QAEFNVEAAQQGMVYIDE 398 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~------e~~L~~lf~--~a~~~v~~a~~gVLfIDE 398 (461)
.+|++||||+|||+.|.+.|+.++..+++.++.+... ++..... ...+...+. ..... ......||++||
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS-k~~l~~~~~~~~~s~si~~~~~~~~~~~~-~~~~~~vil~de 436 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS-KKELLNKLGNATSSHSIKGSKKKKGNRQS-LNSDHFLILMDE 436 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCcccccc-ccHHHhhhhccccccchhhhhcccccccc-cccceeEEEEec
Confidence 3699999999999999999999999999999998773 2211110 011111110 00000 112344999999
Q ss_pred ccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 399 VDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 399 ID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+|-+... .++....|-.+..
T Consensus 437 vD~~~~~-----------dRg~v~~l~~l~~ 456 (871)
T KOG1968|consen 437 VDGMFGE-----------DRGGVSKLSSLCK 456 (871)
T ss_pred cccccch-----------hhhhHHHHHHHHH
Confidence 9988773 1225666666666
No 423
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.67 E-value=0.035 Score=55.92 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=23.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.+++|.||+|+|||||.++|+..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5799999999999999999998774
No 424
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.022 Score=55.69 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=26.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
..|-+-||.|+||+|+|+.||+.++..|+.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yld 34 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLD 34 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeec
Confidence 347799999999999999999999998764
No 425
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.66 E-value=0.012 Score=59.83 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=23.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..++++.|++|+||||++++|...+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 47899999999999999999998774
No 426
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.66 E-value=0.0088 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=16.1
Q ss_pred EEEEccCCCchHHHHHHHHHhc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l 349 (461)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999997665555444
No 427
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.66 E-value=0.051 Score=64.30 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=24.3
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..+.-|.|.|++||||||+.+.|++..+
T Consensus 377 ~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 377 PSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4457799999999999999999998763
No 428
>PRK13808 adenylate kinase; Provisional
Probab=95.65 E-value=0.011 Score=61.35 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=26.7
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.|+|+||||+||||+++.||+.++.+++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 489999999999999999999998876654
No 429
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.065 Score=58.19 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=31.0
Q ss_pred hccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 314 ~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
..+++......+..|-|.||+|.||||+.|.|-+..+.
T Consensus 553 vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv 590 (790)
T KOG0056|consen 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV 590 (790)
T ss_pred eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc
Confidence 44555666677888999999999999999999987743
No 430
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.64 E-value=0.031 Score=52.34 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=26.2
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
+|++|++|+|||++|..++...+.+.+.+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 68999999999999999998876666655443
No 431
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.63 E-value=0.011 Score=57.76 Aligned_cols=33 Identities=42% Similarity=0.691 Sum_probs=26.3
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEecchh
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~ 360 (461)
++|+||+|||||.+|-++|+.++.|++..|.-.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 789999999999999999999999999877643
No 432
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.63 E-value=0.048 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..-+.|+|+||+|||++|..+|...
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHh
Confidence 4568899999999999999998653
No 433
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.61 E-value=0.082 Score=56.50 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...++|.||+|+||||++..||..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998887644
No 434
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.60 E-value=0.062 Score=49.35 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.1
Q ss_pred cccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 322 ~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
-..+..+.|.|+.|+|||||.+.|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445778899999999999999999865
No 435
>PRK12338 hypothetical protein; Provisional
Probab=95.60 E-value=0.012 Score=60.74 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
+..|++.|+||+||||+|++||+.++..++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 356899999999999999999999987654
No 436
>PRK13764 ATPase; Provisional
Probab=95.60 E-value=0.011 Score=65.78 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=23.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.+||+.|+||+||||++++|+..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999998875
No 437
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.58 E-value=0.031 Score=62.04 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=20.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
....+|.|+|||||||++..|...+
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999887766543
No 438
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.58 E-value=0.045 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.7
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.-++|+||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4588999999999999999974
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.58 E-value=0.01 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.6
Q ss_pred cEEEEccCCCchHHHHHHHHHhcC
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
-++|.||+|+|||||++.|++...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCc
Confidence 488999999999999999998664
No 440
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.56 E-value=0.012 Score=60.15 Aligned_cols=33 Identities=42% Similarity=0.646 Sum_probs=28.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.-|++.||+|+|||+||..||+.++..++..|.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 458899999999999999999999887665554
No 441
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.56 E-value=0.016 Score=56.08 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=18.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+++.||.|||||+||-+.|-.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 458899999999999998888544
No 442
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.55 E-value=0.014 Score=54.45 Aligned_cols=29 Identities=41% Similarity=0.630 Sum_probs=25.1
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
|.|+|.+|+||||+++.|++ ++.+++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 68999999999999999999 777766554
No 443
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.54 E-value=0.013 Score=52.63 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=22.6
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCce
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
++|.||+|+|||+|++.|++.+...|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 68999999999999999999875443
No 444
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.54 E-value=0.014 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+..++|.||+|+|||+|++.|++.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46689999999999999999999875
No 445
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.54 E-value=0.028 Score=50.27 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchHH-HHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTL-LAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTt-LAraLA~~l 349 (461)
.++++.|++|+|||+ ++..+.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 568999999999999 555555544
No 446
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.53 E-value=0.087 Score=53.35 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCce
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
.-++|+|+.|+|||++.+.|...++...
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhChhh
Confidence 3478999999999999999999887654
No 447
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.53 E-value=0.016 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+..|.|.|++|+|||||+++|++.+.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999999883
No 448
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.52 E-value=0.057 Score=52.65 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=24.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHh-c--CCceEEec
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARH-V--NVPFVIAD 357 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~-l--~~pfv~i~ 357 (461)
.+..+|++|+||+|||++|..++.. + +.+.+.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3577999999999999999876543 2 44444443
No 449
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.52 E-value=0.028 Score=62.18 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=29.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC----ceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~----pfv~i~~s~l~ 362 (461)
..|+|+|.+|+||||+|++||+.++. +++.++...+.
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 56899999999999999999998874 34555555443
No 450
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.51 E-value=0.045 Score=55.07 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=22.6
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.-++|.||+||||||+.|.|-+.+
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 334567899999999999999998765
No 451
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.50 E-value=0.14 Score=51.65 Aligned_cols=103 Identities=20% Similarity=0.167 Sum_probs=62.5
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHH
Q 012525 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 263 t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLA 342 (461)
+.++..+.+.+.+.|.....-.|..++......+. ......+-|+|.+++|||+++
T Consensus 155 tle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l------------------------~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 155 TLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL------------------------GVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred CHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh------------------------CCCceEEEEEeCCCCCHHHHH
Confidence 56666666667677777666666555543333221 122345779999999999999
Q ss_pred HHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 343 raLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
++.+...+.|- .+.. .|-... ..+.... ...+...|+|||+....++
T Consensus 211 ~~a~Sv~G~p~------~l~~-sw~~T~--n~le~~a-------~~~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 211 QLAASVWGNPD------GLIR-SWNSTD--NGLERTA-------AAHNDLPLVLDELSQADPK 257 (286)
T ss_pred HHhhhhCcCch------hhhh-cchhhH--HHHHHHH-------HHcCCcceEehhccccchh
Confidence 99999998875 2221 122211 1111111 1225668999999866554
No 452
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.46 E-value=0.01 Score=54.76 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=23.2
Q ss_pred EccCCCchHHHHHHHHHhcCCceEEec
Q 012525 331 MGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 331 ~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
+|++|+||||++++|+..++..++.-+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 599999999999999999987666544
No 453
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.44 E-value=0.029 Score=66.17 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=52.5
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc---CcccccHHHHHHHH-HHhhchhhhccCceEEE
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKL-LAQAEFNVEAAQQGMVY 395 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~---g~vGe~~e~~L~~l-f~~a~~~v~~a~~gVLf 395 (461)
....-++|.|++||||||+.+++.+.+ +..++-+-.+.-... .-.|.. ...+..+ +.............|||
T Consensus 395 ~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~-a~TIas~ll~~~~~~~~l~~~~vlV 473 (1102)
T PRK13826 395 GPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQ-SRTLSSWELRWNQGRDQLDNKTVFV 473 (1102)
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCC-eeeHHHHHhhhccCccCCCCCcEEE
Confidence 345678899999999999999997754 555554433321110 001111 1112221 12111111223456999
Q ss_pred EcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 396 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 396 IDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
|||+-.+... ....|++.++
T Consensus 474 IDEAsMv~~~--------------~m~~Ll~~~~ 493 (1102)
T PRK13826 474 LDEAGMVASR--------------QMALFVEAVT 493 (1102)
T ss_pred EECcccCCHH--------------HHHHHHHHHH
Confidence 9999987766 6677777775
No 454
>PRK13975 thymidylate kinase; Provisional
Probab=95.43 E-value=0.013 Score=54.71 Aligned_cols=27 Identities=41% Similarity=0.466 Sum_probs=24.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
.-|+|.|++|+||||+|+.||+.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 348999999999999999999999853
No 455
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.42 E-value=0.012 Score=55.46 Aligned_cols=23 Identities=57% Similarity=0.826 Sum_probs=21.6
Q ss_pred EEEEccCCCchHHHHHHHHHhcC
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|.+.|++|+||||+|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999996
No 456
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.42 E-value=0.049 Score=60.45 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.0
Q ss_pred cccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 322 ~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
-..+..+|+.||+|||||+|.|+||...
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3446789999999999999999999744
No 457
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.41 E-value=0.068 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.7
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5589999999999999999974
No 458
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.082 Score=47.81 Aligned_cols=26 Identities=38% Similarity=0.624 Sum_probs=23.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
...+.|.|+.|+|||||.++|+..+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999998764
No 459
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.39 E-value=0.17 Score=52.39 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=52.1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc------------------CcccccHHHHHHHHHHhh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA------------------GYVGEDVESILYKLLAQA 382 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~------------------g~vGe~~e~~L~~lf~~a 382 (461)
.+..+||.|-.|+||||..--||..+ +..++...+.++... +-.|.+........+..+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 36778999999999999888888766 445554444333321 114556566666655544
Q ss_pred chhhhccCceEEEEcCccccchh
Q 012525 383 EFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 383 ~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
.. ..-.||++|=+.+|..+
T Consensus 218 ka----r~~DvvliDTAGRLhnk 236 (340)
T COG0552 218 KA----RGIDVVLIDTAGRLHNK 236 (340)
T ss_pred HH----cCCCEEEEeCcccccCc
Confidence 32 25569999999998877
No 460
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.37 E-value=0.04 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|+|++|+||||++..||..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999998766
No 461
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.14 Score=56.25 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...|+|+||+|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999888643
No 462
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.34 E-value=0.016 Score=55.27 Aligned_cols=30 Identities=47% Similarity=0.489 Sum_probs=24.1
Q ss_pred EEEEccCCCchHHHHHHHHHhc-CCceEEec
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l-~~pfv~i~ 357 (461)
|.+.|++|+||||+|+.|++.+ +..++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 6789999999999999999998 44444333
No 463
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=95.33 E-value=0.037 Score=58.49 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=60.3
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
+.+.-++|+|||.||||+++-.|-+.++..++..--+.-. - |... ...-.|.+||++-.-
T Consensus 260 PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~Sh-F-WLqP------------------L~d~Ki~llDDAT~~ 319 (432)
T PF00519_consen 260 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH-F-WLQP------------------LADAKIALLDDATYP 319 (432)
T ss_dssp TTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTSC-G-GGGG------------------GCT-SSEEEEEE-HH
T ss_pred CcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCCc-c-cccc------------------hhcCcEEEEcCCccc
Confidence 3356688999999999999999999998876653222100 0 1100 012237888998754
Q ss_pred chhhhccccccccchHHHHHH-HHHHHhCceeeeeccee--eecCCeEEEecCCCCcCc
Q 012525 403 TKKAESLNISRDVSGEGVQQA-LLKMLEGTETKTFAAVS--KVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~a-LL~~LEg~~v~i~~~~r--~~~rd~IiI~TsNid~e~ 458 (461)
.=. -.+. |..+|||..+.+...-+ ...+-.=++.|||+|...
T Consensus 320 cW~--------------Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~ 364 (432)
T PF00519_consen 320 CWD--------------YIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKK 364 (432)
T ss_dssp HHH--------------HHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTT
T ss_pred HHH--------------HHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCc
Confidence 444 3444 56899999888766511 111222345788888643
No 464
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.33 E-value=0.03 Score=52.73 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=43.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCccc------ccHHHHHHHHHHhhchhhhccCceEEEEcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVG------EDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vG------e~~e~~L~~lf~~a~~~v~~a~~gVLfIDE 398 (461)
+.|.|+|+--||||+|++.||+.++.++...-..+.......| .+..++...........+ ...+.|+|||-
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av-~~a~~v~fiDT 86 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAYEDAAV-RYANKVAFIDT 86 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHhCCCchhHHHHHHHHHHhCCchhhhhccHHHHHhhhHHHHHHHH-hCCCceEEEec
Confidence 4578999999999999999999999876644443333221222 222333333332222222 23457888884
No 465
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.30 E-value=0.084 Score=58.72 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=13.3
Q ss_pred CcEEEEccCCCchHH
Q 012525 326 SNVLLMGPTGSGKTL 340 (461)
Q Consensus 326 ~~VLL~GPPGTGKTt 340 (461)
..+++.|++||||||
T Consensus 67 qvlIviGeTGsGKST 81 (674)
T KOG0922|consen 67 QVLIVIGETGSGKST 81 (674)
T ss_pred CEEEEEcCCCCCccc
Confidence 458899999999998
No 466
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.29 E-value=0.02 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEEEccCCCchHHHHHHHHHhc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l 349 (461)
|.|.|+.|+||||+++.|++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988
No 467
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.28 E-value=0.021 Score=53.53 Aligned_cols=33 Identities=36% Similarity=0.563 Sum_probs=25.7
Q ss_pred EEEEccCCCchHHHHHHHHHhcC---CceEEecchh
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVN---VPFVIADATT 360 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~ 360 (461)
|.+.|++|+||||+|+.|++.+. .+...++..+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 68999999999999999999873 3444444443
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.28 E-value=0.07 Score=57.77 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=25.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
.+..+|+.||||+|||+|+..++... +.+.+.+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~ 299 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAY 299 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 34779999999999999998887644 334444444
No 469
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.28 E-value=0.011 Score=52.91 Aligned_cols=27 Identities=37% Similarity=0.617 Sum_probs=23.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
..|+|.|+-|+||||++|.+++.++..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 568999999999999999999999763
No 470
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.23 E-value=0.077 Score=58.24 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.9
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.|++|+|||||++.|++..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356778999999999999999999876
No 471
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.22 E-value=0.069 Score=57.72 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=28.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc-eEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-FVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p-fv~i~~ 358 (461)
+..|+++|++|+||||+|..||..++.. ++..|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 5678999999999999999999999875 334443
No 472
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.21 E-value=0.099 Score=54.12 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=45.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcC---cccccHHHHH-------HHHHHhhchhhhccCc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVESIL-------YKLLAQAEFNVEAAQQ 391 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g---~vGe~~e~~L-------~~lf~~a~~~v~~a~~ 391 (461)
.+-++++||||+|||+||-.++... +...+.++...-.... ..|.+....+ ..++......+.....
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 4568899999999999998877533 5566666654311110 0111111100 0111111112233456
Q ss_pred eEEEEcCccccchh
Q 012525 392 GMVYIDEVDKITKK 405 (461)
Q Consensus 392 gVLfIDEID~L~~~ 405 (461)
.+|+||-|..+.+.
T Consensus 135 ~lIVIDSvaal~~~ 148 (325)
T cd00983 135 DLIVVDSVAALVPK 148 (325)
T ss_pred CEEEEcchHhhccc
Confidence 79999999988763
No 473
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.21 E-value=0.04 Score=57.94 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+|+.||+|+||||++++|.+.+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998877
No 474
>PRK08356 hypothetical protein; Provisional
Probab=95.18 E-value=0.021 Score=53.90 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=22.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
..|+|+||||+||||+|+.|++ .+.+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~i 33 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRV 33 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEE
Confidence 3478999999999999999964 666543
No 475
>PRK10867 signal recognition particle protein; Provisional
Probab=95.16 E-value=0.29 Score=52.62 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc----CCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~s 359 (461)
+..|+|.|++|+||||++-.||..+ +..+..+++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 4678899999999999888887644 4445555543
No 476
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.14 E-value=0.019 Score=56.03 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=26.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
..|.|.|++|+|||++|+.||+.++.+++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999887764
No 477
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.053 Score=54.31 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
.-+.++|+.|+|||+++|++...++.
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~ 77 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNE 77 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCC
Confidence 45789999999999999988877653
No 478
>PRK04328 hypothetical protein; Provisional
Probab=95.13 E-value=0.1 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=20.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHH
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+..+|+.|+||||||+||..++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~ 45 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLW 45 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357789999999999999987654
No 479
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.13 E-value=0.11 Score=49.93 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=45.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc-------hh---hhh----------cC--cccccH---HHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA-------TT---LTQ----------AG--YVGEDV---ESILY 376 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~-------s~---l~~----------~g--~vGe~~---e~~L~ 376 (461)
...|++++.+|.|||++|-.+|-.. +.++..+.. .+ +.. .+ |..+.. ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 3679999999999999998887433 222211110 00 000 00 111111 12334
Q ss_pred HHHHhhchhhhccCceEEEEcCccccchh
Q 012525 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 377 ~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
..+..+...+......+|+||||..+...
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~ 130 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKY 130 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHC
Confidence 45555665565667789999999876653
No 480
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.12 E-value=0.022 Score=54.33 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=26.8
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.|.|+|++|+||||+++.|++.++.+++..+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 3789999999999999999998888776444
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.12 E-value=0.017 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEccCCCchHHHHHHHHHhc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l 349 (461)
|.|.|++|+|||||++.|++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 482
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.08 E-value=0.049 Score=58.98 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.6
Q ss_pred ccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 321 VELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 321 ~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.-..+..+.|.||+|+|||||+++|++..
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33456778999999999999999999766
No 483
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.07 E-value=0.024 Score=57.65 Aligned_cols=31 Identities=39% Similarity=0.704 Sum_probs=26.8
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
|++.||+|+|||+||..||+.++..++.++.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 7899999999999999999999876665544
No 484
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.016 Score=56.70 Aligned_cols=23 Identities=48% Similarity=0.751 Sum_probs=21.6
Q ss_pred EEEEccCCCchHHHHHHHHHhcC
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|+|+|+||+||||+|+-||+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999884
No 485
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.07 E-value=0.14 Score=47.72 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=17.6
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 012525 328 VLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~ 347 (461)
|.+|..+|+|||++|-.+|-
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ 24 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLAL 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67888889999999988874
No 486
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.07 E-value=0.018 Score=54.82 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..|.|.|++|+|||||+++|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577999999999999999998775
No 487
>PF14516 AAA_35: AAA-like domain
Probab=95.06 E-value=0.1 Score=53.70 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~ 362 (461)
+..+.+.||..+|||+|...+.+.+ +...+.+++..+.
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 3678999999999999998887655 5566777766543
No 488
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.05 E-value=0.039 Score=58.36 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
++++.|||..|||||+|--.+...+
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcC
Confidence 6899999999999999998887544
No 489
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.05 E-value=0.014 Score=54.72 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=23.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
...++|.||+|+||||++++|+..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 47799999999999999999998774
No 490
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.00 E-value=0.021 Score=54.10 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+.-|+|.||+|+|||+|++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3558999999999999999998765
No 491
>PRK06761 hypothetical protein; Provisional
Probab=94.98 E-value=0.025 Score=57.41 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=24.2
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
-|+|.|++|+||||+++.|++.+....+
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~ 32 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGI 32 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence 4889999999999999999999875433
No 492
>PLN02840 tRNA dimethylallyltransferase
Probab=94.97 E-value=0.025 Score=60.33 Aligned_cols=33 Identities=39% Similarity=0.646 Sum_probs=28.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
..|+|.||+|+|||+||..||+.++..++.++.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 458899999999999999999999876665553
No 493
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.97 E-value=0.13 Score=56.32 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=26.4
Q ss_pred cccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 318 DDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 318 ~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
....-..+..+.|.||+|+||||++++|.+...
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 333344567788999999999999999998764
No 494
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.96 E-value=0.47 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=20.7
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHH
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
....-+.|+||||+|||+|+..+|-
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHH
Confidence 3456677999999999999988774
No 495
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.95 E-value=0.079 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+...||.||||||||+|++.||+.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999855
No 496
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.95 E-value=0.12 Score=50.88 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=29.3
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhh
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l 361 (461)
.....+|++|+||||||+++..++... +.+.+.+...+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 345789999999999999998876533 567776665543
No 497
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.94 E-value=0.022 Score=64.41 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=26.3
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.|.|.|||||||||+|+.||+.++..|+..
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~ 32 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDT 32 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeec
Confidence 478999999999999999999998776643
No 498
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.93 E-value=0.032 Score=52.81 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=30.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc-CCceEEecchhhhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV-NVPFVIADATTLTQ 363 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l-~~pfv~i~~s~l~~ 363 (461)
+.-++|.|+||+|||++++.+...+ ...++.++..++..
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 4557888999999999999999988 77788888887764
No 499
>PRK07667 uridine kinase; Provisional
Probab=94.92 E-value=0.028 Score=53.21 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=25.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC---CceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s 359 (461)
.-|.|.|++|+||||+|+.|++.+. .++..++..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3477999999999999999999874 344444443
No 500
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=94.88 E-value=0.093 Score=52.68 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
+.-|||=|+||+||||+|.-||+.++.+.+
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence 355888899999999999999999998643
Done!