Query 012525
Match_columns 461
No_of_seqs 289 out of 2515
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 99.9 4.3E-22 1.5E-26 201.2 10.7 179 260-454 2-182 (363)
2 1um8_A ATP-dependent CLP prote 99.8 2E-20 6.9E-25 189.6 15.8 178 258-436 6-183 (376)
3 4b4t_J 26S protease regulatory 99.8 2.6E-20 8.8E-25 193.3 14.6 149 270-454 146-296 (405)
4 4b4t_I 26S protease regulatory 99.8 1.1E-19 3.7E-24 189.8 15.6 149 270-454 180-330 (437)
5 4b4t_L 26S protease subunit RP 99.8 9.7E-20 3.3E-24 190.9 15.0 149 270-454 179-329 (437)
6 4b4t_M 26S protease regulatory 99.8 1.9E-19 6.6E-24 188.4 15.0 149 270-454 179-329 (434)
7 4b4t_K 26S protease regulatory 99.8 1.8E-19 6.3E-24 188.3 12.6 149 270-454 170-320 (428)
8 4b4t_H 26S protease regulatory 99.8 4E-19 1.4E-23 187.0 13.6 148 271-454 208-357 (467)
9 1g41_A Heat shock protein HSLU 99.8 2.6E-18 8.8E-23 180.4 16.2 104 262-382 4-107 (444)
10 1ofh_A ATP-dependent HSL prote 99.7 1.2E-17 4.1E-22 162.2 13.3 173 262-454 4-177 (310)
11 3cf2_A TER ATPase, transitiona 99.7 1.7E-17 5.7E-22 185.1 10.9 148 275-455 479-626 (806)
12 3eie_A Vacuolar protein sortin 99.7 2E-16 6.7E-21 157.6 13.4 147 271-454 17-163 (322)
13 1xwi_A SKD1 protein; VPS4B, AA 99.7 4.5E-16 1.6E-20 155.8 14.9 148 271-455 11-159 (322)
14 3cf2_A TER ATPase, transitiona 99.7 1.9E-16 6.5E-21 176.7 12.2 147 271-454 203-349 (806)
15 3cf0_A Transitional endoplasmi 99.7 5E-16 1.7E-20 153.5 12.8 149 271-455 14-164 (301)
16 2qp9_X Vacuolar protein sortin 99.6 9.9E-16 3.4E-20 155.3 13.2 149 270-455 49-197 (355)
17 3t15_A Ribulose bisphosphate c 99.6 8.4E-16 2.9E-20 151.8 10.1 128 325-455 36-165 (293)
18 3vfd_A Spastin; ATPase, microt 99.6 2.4E-15 8.1E-20 153.6 12.9 148 271-454 114-261 (389)
19 3h4m_A Proteasome-activating n 99.6 5.8E-15 2E-19 142.8 14.1 149 271-455 16-166 (285)
20 3d8b_A Fidgetin-like protein 1 99.6 5E-15 1.7E-19 150.0 13.0 146 275-455 86-231 (357)
21 1r6b_X CLPA protein; AAA+, N-t 99.6 3.7E-15 1.3E-19 164.3 12.9 164 251-457 432-610 (758)
22 3b9p_A CG5977-PA, isoform A; A 99.6 8.7E-15 3E-19 142.5 13.5 149 271-454 20-168 (297)
23 2zan_A Vacuolar protein sortin 99.6 4.3E-15 1.5E-19 155.2 11.6 149 270-455 132-281 (444)
24 1lv7_A FTSH; alpha/beta domain 99.6 1.4E-14 4.8E-19 138.7 14.0 151 270-455 10-160 (257)
25 2ce7_A Cell division protein F 99.6 5.9E-15 2E-19 156.2 12.4 151 270-455 14-164 (476)
26 3syl_A Protein CBBX; photosynt 99.6 1.8E-14 6.3E-19 140.5 14.7 151 263-454 21-178 (309)
27 2qz4_A Paraplegin; AAA+, SPG7, 99.6 1.1E-14 3.9E-19 138.3 12.0 147 275-455 8-155 (262)
28 4fcw_A Chaperone protein CLPB; 99.6 8.6E-15 2.9E-19 142.8 11.1 148 265-455 9-170 (311)
29 3hu3_A Transitional endoplasmi 99.5 8.8E-15 3E-19 155.2 10.7 143 275-455 206-350 (489)
30 3pxi_A Negative regulator of g 99.5 1.4E-14 5E-19 160.0 9.7 162 250-457 464-632 (758)
31 3n70_A Transport activator; si 99.5 8.2E-15 2.8E-19 129.7 4.5 113 275-457 3-118 (145)
32 3co5_A Putative two-component 99.5 1E-14 3.5E-19 129.0 4.2 114 275-458 6-119 (143)
33 2x8a_A Nuclear valosin-contain 99.5 2.1E-13 7.2E-18 133.7 13.0 146 270-454 8-155 (274)
34 2dhr_A FTSH; AAA+ protein, hex 99.5 2.7E-13 9.3E-18 144.2 13.8 150 271-455 30-179 (499)
35 2r44_A Uncharacterized protein 99.5 1.6E-14 5.6E-19 143.1 4.0 137 265-455 19-160 (331)
36 3pfi_A Holliday junction ATP-d 99.5 4.3E-13 1.5E-17 132.9 13.6 131 270-455 27-164 (338)
37 1qvr_A CLPB protein; coiled co 99.5 2.1E-13 7.2E-18 152.9 12.7 164 249-455 530-711 (854)
38 2bjv_A PSP operon transcriptio 99.5 9.4E-14 3.2E-18 133.5 8.4 142 270-456 4-152 (265)
39 2r62_A Cell division protease 99.4 8.9E-15 3.1E-19 140.4 0.4 147 275-455 13-161 (268)
40 1ojl_A Transcriptional regulat 99.4 1.5E-13 5.1E-18 136.6 8.3 132 274-456 3-148 (304)
41 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 7.3E-13 2.5E-17 140.9 12.4 142 265-454 14-159 (500)
42 3f9v_A Minichromosome maintena 99.4 4E-14 1.4E-18 153.3 1.9 153 264-455 286-444 (595)
43 1ypw_A Transitional endoplasmi 99.4 2.4E-14 8.3E-19 160.0 -0.2 147 275-454 479-625 (806)
44 2c9o_A RUVB-like 1; hexameric 99.4 3.1E-13 1.1E-17 141.2 8.2 105 274-408 38-144 (456)
45 1g8p_A Magnesium-chelatase 38 99.4 6.3E-13 2.2E-17 131.4 9.7 114 326-456 46-198 (350)
46 1d2n_A N-ethylmaleimide-sensit 99.4 4.7E-13 1.6E-17 129.3 8.1 111 325-455 64-177 (272)
47 1ixz_A ATP-dependent metallopr 99.4 2.7E-12 9.3E-17 122.5 12.3 137 270-432 14-150 (254)
48 3m6a_A ATP-dependent protease 99.4 6.5E-13 2.2E-17 142.2 7.6 152 264-456 72-235 (543)
49 1hqc_A RUVB; extended AAA-ATPa 99.4 5.2E-12 1.8E-16 123.7 13.4 128 275-455 14-148 (324)
50 3pvs_A Replication-associated 99.3 2E-12 7E-17 135.5 10.2 109 270-433 24-135 (447)
51 1iy2_A ATP-dependent metallopr 99.3 1.2E-11 4.1E-16 120.1 12.9 150 270-454 38-187 (278)
52 1ypw_A Transitional endoplasmi 99.3 5.6E-12 1.9E-16 140.9 10.9 148 270-454 202-349 (806)
53 2p65_A Hypothetical protein PF 99.3 1.2E-11 4E-16 110.0 10.8 117 275-431 24-151 (187)
54 1ny5_A Transcriptional regulat 99.3 1.9E-11 6.5E-16 125.4 12.9 131 305-457 140-284 (387)
55 3uk6_A RUVB-like 2; hexameric 99.3 2.7E-11 9.2E-16 120.9 12.3 65 271-362 43-109 (368)
56 1jbk_A CLPB protein; beta barr 99.2 4.3E-11 1.5E-15 106.0 11.0 116 275-431 24-150 (195)
57 3u61_B DNA polymerase accessor 99.2 2.3E-11 7.9E-16 119.9 9.7 107 270-430 24-132 (324)
58 3dzd_A Transcriptional regulat 99.2 1.3E-11 4.4E-16 126.0 7.3 133 306-457 133-275 (368)
59 2chg_A Replication factor C sm 99.2 1.4E-10 4.9E-15 105.0 12.7 103 275-430 19-128 (226)
60 3f8t_A Predicted ATPase involv 99.2 1.6E-11 5.3E-16 129.8 6.9 141 264-456 205-350 (506)
61 3k1j_A LON protease, ATP-depen 99.2 4.6E-11 1.6E-15 129.2 9.8 57 385-455 196-262 (604)
62 1sxj_A Activator 1 95 kDa subu 99.1 2.3E-10 7.9E-15 121.4 12.7 127 270-430 37-177 (516)
63 1njg_A DNA polymerase III subu 99.1 3.4E-10 1.2E-14 103.4 11.9 112 275-430 25-152 (250)
64 1iqp_A RFCS; clamp loader, ext 99.1 3.5E-10 1.2E-14 110.1 10.7 108 271-430 24-136 (327)
65 1sxj_D Activator 1 41 kDa subu 99.1 1.6E-10 5.4E-15 114.1 7.5 107 271-431 36-160 (353)
66 2chq_A Replication factor C sm 99.0 2E-10 6.8E-15 111.4 6.5 109 270-430 15-128 (319)
67 1jr3_A DNA polymerase III subu 99.0 8.7E-10 3E-14 109.6 10.4 107 271-430 15-145 (373)
68 1sxj_B Activator 1 37 kDa subu 99.0 6.8E-10 2.3E-14 107.8 9.0 106 271-430 20-133 (323)
69 2gno_A DNA polymerase III, gam 99.0 1.4E-09 4.7E-14 108.6 11.2 84 326-430 19-108 (305)
70 1sxj_C Activator 1 40 kDa subu 99.0 1.8E-09 6.1E-14 107.7 11.9 107 270-430 23-136 (340)
71 3pxg_A Negative regulator of g 99.0 4.2E-10 1.4E-14 118.2 6.6 114 271-456 179-302 (468)
72 2qby_B CDC6 homolog 3, cell di 99.0 1.1E-09 3.8E-14 109.3 9.0 63 273-362 20-93 (384)
73 1qvr_A CLPB protein; coiled co 99.0 1.2E-09 4.2E-14 122.4 9.9 121 270-432 168-299 (854)
74 1r6b_X CLPA protein; AAA+, N-t 98.9 1.5E-09 5.1E-14 119.7 10.2 121 269-431 183-314 (758)
75 2v1u_A Cell division control p 98.9 3.2E-09 1.1E-13 105.2 10.5 102 274-405 20-145 (387)
76 1l8q_A Chromosomal replication 98.9 1.8E-09 6E-14 106.7 7.6 86 325-429 37-125 (324)
77 1a5t_A Delta prime, HOLB; zinc 98.9 1.2E-08 4E-13 102.1 13.1 86 326-430 25-134 (334)
78 3te6_A Regulatory protein SIR3 98.9 5E-09 1.7E-13 105.5 10.4 77 325-403 45-145 (318)
79 1in4_A RUVB, holliday junction 98.9 7.4E-09 2.5E-13 103.6 10.9 108 270-432 23-130 (334)
80 3ec2_A DNA replication protein 98.9 1.1E-08 3.6E-13 92.5 10.7 102 325-458 38-146 (180)
81 3pxi_A Negative regulator of g 98.9 2E-09 6.9E-14 118.9 7.1 114 271-456 179-302 (758)
82 2z4s_A Chromosomal replication 98.8 9.2E-09 3.1E-13 107.2 11.3 86 326-429 131-221 (440)
83 1fnn_A CDC6P, cell division co 98.8 1.4E-08 4.7E-13 101.1 11.6 113 274-430 18-151 (389)
84 1sxj_E Activator 1 40 kDa subu 98.8 1.6E-08 5.5E-13 100.2 11.3 49 270-349 12-60 (354)
85 3bos_A Putative DNA replicatio 98.8 2.6E-08 8.9E-13 92.0 10.5 77 325-429 52-131 (242)
86 2qby_A CDC6 homolog 1, cell di 98.8 2.1E-08 7E-13 99.2 10.3 117 274-430 21-158 (386)
87 2w58_A DNAI, primosome compone 98.6 1.5E-08 5.2E-13 92.9 3.4 37 326-362 55-94 (202)
88 2kjq_A DNAA-related protein; s 98.6 5E-08 1.7E-12 87.2 6.6 60 325-405 36-98 (149)
89 1tue_A Replication protein E1; 98.4 1.5E-07 5E-12 89.8 4.9 99 326-457 59-159 (212)
90 3cmw_A Protein RECA, recombina 98.4 5.4E-07 1.8E-11 107.4 10.8 159 266-430 1014-1203(1706)
91 2qgz_A Helicase loader, putati 98.4 3.5E-08 1.2E-12 98.2 -0.8 38 325-362 152-193 (308)
92 4akg_A Glutathione S-transfera 98.4 7.4E-07 2.5E-11 110.2 10.1 115 325-455 1267-1394(2695)
93 4akg_A Glutathione S-transfera 98.3 1.9E-06 6.6E-11 106.6 10.7 105 325-456 645-758 (2695)
94 1u0j_A DNA replication protein 98.2 1.8E-06 6.1E-11 85.1 8.1 97 325-457 104-202 (267)
95 1w5s_A Origin recognition comp 98.1 6.4E-06 2.2E-10 82.6 9.0 61 274-359 23-95 (412)
96 2qen_A Walker-type ATPase; unk 98.0 3.1E-05 1.1E-09 75.3 12.4 51 275-360 14-64 (350)
97 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.3E-05 4.5E-10 81.1 9.4 74 325-406 123-198 (331)
98 2fna_A Conserved hypothetical 97.8 4.7E-05 1.6E-09 74.1 8.3 35 326-360 31-65 (357)
99 3vkg_A Dynein heavy chain, cyt 97.8 8.1E-05 2.8E-09 93.3 11.9 105 325-456 604-718 (3245)
100 3vkg_A Dynein heavy chain, cyt 97.7 4.4E-05 1.5E-09 95.6 8.8 115 325-455 1304-1432(3245)
101 1qhx_A CPT, protein (chloramph 97.6 5.5E-05 1.9E-09 67.3 4.9 34 326-359 4-37 (178)
102 3cmu_A Protein RECA, recombina 97.6 6.7E-05 2.3E-09 90.9 6.9 80 323-406 1425-1521(2050)
103 3trf_A Shikimate kinase, SK; a 97.5 5.3E-05 1.8E-09 67.9 4.1 34 326-359 6-39 (185)
104 1ye8_A Protein THEP1, hypothet 97.5 0.00031 1E-08 64.3 9.2 27 327-353 2-28 (178)
105 3vaa_A Shikimate kinase, SK; s 97.4 9.3E-05 3.2E-09 67.8 4.2 34 325-358 25-58 (199)
106 1zuh_A Shikimate kinase; alpha 97.4 0.0001 3.5E-09 65.3 4.0 33 326-358 8-40 (168)
107 1via_A Shikimate kinase; struc 97.4 0.0001 3.6E-09 65.8 3.8 32 327-358 6-37 (175)
108 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.4E-09 64.0 4.3 32 327-358 3-34 (173)
109 3upu_A ATP-dependent DNA helic 97.3 0.00057 2E-08 71.0 9.7 24 326-349 46-69 (459)
110 2iyv_A Shikimate kinase, SK; t 97.3 0.00014 4.9E-09 65.2 4.2 33 326-358 3-35 (184)
111 1ly1_A Polynucleotide kinase; 97.3 0.00036 1.2E-08 61.6 6.4 31 326-356 3-34 (181)
112 3iij_A Coilin-interacting nucl 97.3 0.00016 5.5E-09 64.7 4.1 34 325-358 11-44 (180)
113 1kag_A SKI, shikimate kinase I 97.2 0.00018 6.1E-09 63.6 4.0 32 326-357 5-36 (173)
114 2r2a_A Uncharacterized protein 97.2 0.00021 7.3E-09 66.9 4.5 78 326-406 6-103 (199)
115 2rhm_A Putative kinase; P-loop 97.2 0.00018 6.3E-09 64.4 3.8 34 325-358 5-38 (193)
116 1y63_A LMAJ004144AAA protein; 97.2 0.00018 6.3E-09 65.1 3.8 34 325-358 10-44 (184)
117 1e6c_A Shikimate kinase; phosp 97.2 0.00024 8.3E-09 62.6 3.8 32 326-357 3-34 (173)
118 2cdn_A Adenylate kinase; phosp 97.1 0.00027 9.4E-09 64.4 4.2 33 325-357 20-52 (201)
119 1tev_A UMP-CMP kinase; ploop, 97.1 0.00025 8.5E-09 63.3 3.6 32 326-357 4-35 (196)
120 2c95_A Adenylate kinase 1; tra 97.1 0.00026 8.8E-09 63.6 3.7 33 325-357 9-41 (196)
121 3lw7_A Adenylate kinase relate 97.1 0.00027 9.3E-09 61.4 3.7 30 327-357 3-32 (179)
122 2ze6_A Isopentenyl transferase 97.1 0.0003 1E-08 67.5 4.3 32 327-358 3-34 (253)
123 3t61_A Gluconokinase; PSI-biol 97.1 0.00038 1.3E-08 63.5 4.8 33 326-358 19-51 (202)
124 2pt5_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 61.7 4.0 32 327-358 2-33 (168)
125 3cm0_A Adenylate kinase; ATP-b 97.1 0.00021 7.3E-09 63.9 2.9 32 326-357 5-36 (186)
126 1aky_A Adenylate kinase; ATP:A 97.1 0.00033 1.1E-08 64.9 4.0 31 326-356 5-35 (220)
127 1n0w_A DNA repair protein RAD5 97.0 0.00095 3.3E-08 61.8 7.0 25 324-348 23-47 (243)
128 3dl0_A Adenylate kinase; phosp 97.0 0.00036 1.2E-08 64.2 4.1 31 327-357 2-32 (216)
129 2orw_A Thymidine kinase; TMTK, 97.0 0.00066 2.3E-08 62.3 5.7 23 326-348 4-26 (184)
130 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.004 1.4E-07 56.7 10.9 25 325-349 23-47 (235)
131 2bwj_A Adenylate kinase 5; pho 97.0 0.00036 1.2E-08 62.8 3.7 32 326-357 13-44 (199)
132 3fb4_A Adenylate kinase; psych 97.0 0.00041 1.4E-08 63.8 4.0 31 327-357 2-32 (216)
133 1kht_A Adenylate kinase; phosp 97.0 0.00032 1.1E-08 62.6 3.2 32 326-357 4-40 (192)
134 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0015 5.2E-08 62.6 8.1 37 326-362 5-44 (260)
135 1zp6_A Hypothetical protein AT 97.0 0.00044 1.5E-08 62.1 4.0 36 326-361 10-45 (191)
136 1ak2_A Adenylate kinase isoenz 97.0 0.00043 1.5E-08 65.1 4.0 33 325-357 16-48 (233)
137 2ehv_A Hypothetical protein PH 97.0 0.0026 8.7E-08 59.0 9.2 24 323-346 28-51 (251)
138 1zd8_A GTP:AMP phosphotransfer 97.0 0.00041 1.4E-08 64.7 3.7 31 326-356 8-38 (227)
139 3e1s_A Exodeoxyribonuclease V, 97.0 0.0013 4.4E-08 70.9 8.0 32 325-356 204-238 (574)
140 2cvh_A DNA repair and recombin 97.0 0.0017 5.8E-08 59.2 7.7 35 325-359 20-54 (220)
141 2vli_A Antibiotic resistance p 97.0 0.00036 1.2E-08 62.1 3.2 29 326-354 6-34 (183)
142 1qf9_A UMP/CMP kinase, protein 97.0 0.00041 1.4E-08 61.8 3.4 32 326-357 7-38 (194)
143 1zak_A Adenylate kinase; ATP:A 96.9 0.00035 1.2E-08 64.8 3.0 31 326-356 6-36 (222)
144 3be4_A Adenylate kinase; malar 96.9 0.00048 1.6E-08 64.0 3.8 31 326-356 6-36 (217)
145 1knq_A Gluconate kinase; ALFA/ 96.9 0.00061 2.1E-08 60.5 4.1 32 326-357 9-40 (175)
146 1ukz_A Uridylate kinase; trans 96.9 0.00056 1.9E-08 62.2 3.8 32 326-357 16-47 (203)
147 2fz4_A DNA repair protein RAD2 96.9 0.0031 1.1E-07 59.7 8.9 34 326-359 109-142 (237)
148 1e4v_A Adenylate kinase; trans 96.8 0.00064 2.2E-08 62.8 3.8 30 327-356 2-31 (214)
149 3tlx_A Adenylate kinase 2; str 96.8 0.00047 1.6E-08 65.7 2.9 33 325-357 29-61 (243)
150 2pez_A Bifunctional 3'-phospho 96.8 0.00098 3.4E-08 59.6 4.5 37 326-362 6-45 (179)
151 4eun_A Thermoresistant glucoki 96.8 0.00091 3.1E-08 61.2 4.4 31 325-355 29-59 (200)
152 2b8t_A Thymidine kinase; deoxy 96.8 0.0029 9.9E-08 60.3 7.8 31 326-356 13-46 (223)
153 2pbr_A DTMP kinase, thymidylat 96.7 0.0011 3.7E-08 59.1 4.5 31 327-357 2-35 (195)
154 3sr0_A Adenylate kinase; phosp 96.7 0.00094 3.2E-08 62.7 4.2 29 327-355 2-30 (206)
155 2jaq_A Deoxyguanosine kinase; 96.7 0.00091 3.1E-08 60.2 4.0 29 327-355 2-30 (205)
156 4a74_A DNA repair and recombin 96.7 0.003 1E-07 57.8 7.5 25 325-349 25-49 (231)
157 2v54_A DTMP kinase, thymidylat 96.7 0.001 3.6E-08 60.1 4.3 33 325-357 4-37 (204)
158 2p5t_B PEZT; postsegregational 96.7 0.0009 3.1E-08 63.9 3.8 37 325-361 32-68 (253)
159 1cke_A CK, MSSA, protein (cyti 96.7 0.00098 3.3E-08 61.4 3.9 30 326-355 6-35 (227)
160 1nks_A Adenylate kinase; therm 96.6 0.00071 2.4E-08 60.2 2.5 24 327-350 3-26 (194)
161 2xb4_A Adenylate kinase; ATP-b 96.6 0.0011 3.6E-08 62.1 3.6 30 327-356 2-31 (223)
162 1gvn_B Zeta; postsegregational 96.6 0.0013 4.5E-08 64.5 4.3 37 325-361 33-69 (287)
163 3umf_A Adenylate kinase; rossm 96.6 0.0012 4.2E-08 62.6 4.0 30 325-354 29-58 (217)
164 1svm_A Large T antigen; AAA+ f 96.6 0.0015 5.2E-08 67.0 4.9 31 325-355 169-199 (377)
165 2if2_A Dephospho-COA kinase; a 96.6 0.0011 3.9E-08 60.2 3.5 31 327-358 3-33 (204)
166 3ake_A Cytidylate kinase; CMP 96.6 0.0013 4.6E-08 59.4 3.9 31 327-357 4-34 (208)
167 2wwf_A Thymidilate kinase, put 96.6 0.00084 2.9E-08 61.1 2.4 29 325-353 10-38 (212)
168 2z0h_A DTMP kinase, thymidylat 96.5 0.0017 5.9E-08 58.2 4.4 30 328-357 3-35 (197)
169 3nwj_A ATSK2; P loop, shikimat 96.5 0.0014 4.8E-08 63.4 4.0 34 325-358 48-81 (250)
170 3uie_A Adenylyl-sulfate kinase 96.5 0.0018 6.2E-08 59.2 4.5 37 325-361 25-64 (200)
171 3crm_A TRNA delta(2)-isopenten 96.5 0.0013 4.6E-08 66.2 3.9 34 326-359 6-39 (323)
172 2zr9_A Protein RECA, recombina 96.5 0.0039 1.3E-07 63.1 7.3 77 324-404 60-153 (349)
173 3hr8_A Protein RECA; alpha and 96.5 0.0043 1.5E-07 63.2 7.6 77 324-404 60-153 (356)
174 1uf9_A TT1252 protein; P-loop, 96.5 0.0014 4.9E-08 59.0 3.7 31 326-357 9-39 (203)
175 2dr3_A UPF0273 protein PH0284; 96.5 0.0087 3E-07 55.2 9.0 25 324-348 22-46 (247)
176 1jjv_A Dephospho-COA kinase; P 96.5 0.0015 5.1E-08 59.6 3.6 30 327-357 4-33 (206)
177 1g5t_A COB(I)alamin adenosyltr 96.5 0.01 3.5E-07 55.7 9.3 112 325-458 28-166 (196)
178 1jr3_D DNA polymerase III, del 96.5 0.0021 7.3E-08 63.5 4.8 81 325-430 18-103 (343)
179 2bbw_A Adenylate kinase 4, AK4 96.4 0.0023 7.8E-08 60.4 4.4 30 325-354 27-56 (246)
180 1m7g_A Adenylylsulfate kinase; 96.4 0.0053 1.8E-07 56.5 6.7 37 326-362 26-66 (211)
181 1nn5_A Similar to deoxythymidy 96.4 0.0011 3.9E-08 60.2 2.0 27 325-351 9-35 (215)
182 2z43_A DNA repair and recombin 96.4 0.0046 1.6E-07 61.3 6.5 37 323-359 105-150 (324)
183 2plr_A DTMP kinase, probable t 96.3 0.002 6.9E-08 58.2 3.6 27 326-352 5-31 (213)
184 2grj_A Dephospho-COA kinase; T 96.3 0.0021 7.2E-08 59.6 3.7 32 327-358 14-45 (192)
185 1w36_D RECD, exodeoxyribonucle 96.3 0.01 3.6E-07 64.1 9.6 25 325-349 164-188 (608)
186 3a8t_A Adenylate isopentenyltr 96.3 0.0019 6.4E-08 65.6 3.4 34 326-359 41-74 (339)
187 2h92_A Cytidylate kinase; ross 96.2 0.0028 9.7E-08 58.2 4.0 33 326-358 4-36 (219)
188 3r20_A Cytidylate kinase; stru 96.2 0.003 1E-07 60.7 4.3 32 325-356 9-40 (233)
189 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0019 6.6E-08 66.0 3.1 30 326-355 25-54 (359)
190 2qor_A Guanylate kinase; phosp 96.2 0.0028 9.5E-08 58.1 3.8 27 324-350 11-37 (204)
191 3kl4_A SRP54, signal recogniti 96.2 0.021 7.2E-07 59.6 10.9 33 325-357 97-132 (433)
192 1vht_A Dephospho-COA kinase; s 96.2 0.0027 9.2E-08 58.5 3.7 31 326-357 5-35 (218)
193 4e22_A Cytidylate kinase; P-lo 96.1 0.0039 1.3E-07 59.6 4.5 31 325-355 27-57 (252)
194 3dm5_A SRP54, signal recogniti 96.1 0.034 1.2E-06 58.3 12.0 75 325-403 100-195 (443)
195 1q3t_A Cytidylate kinase; nucl 96.1 0.0037 1.3E-07 58.7 4.0 33 325-357 16-48 (236)
196 1ltq_A Polynucleotide kinase; 96.1 0.0026 8.8E-08 61.5 2.9 32 326-357 3-35 (301)
197 3cmu_A Protein RECA, recombina 96.1 0.011 3.7E-07 72.1 8.7 81 322-406 1078-1175(2050)
198 3b6e_A Interferon-induced heli 96.0 0.0074 2.5E-07 54.4 5.7 23 326-348 49-71 (216)
199 1u94_A RECA protein, recombina 96.0 0.012 4E-07 59.8 7.8 36 324-359 62-100 (356)
200 1uj2_A Uridine-cytidine kinase 96.0 0.004 1.4E-07 59.1 4.1 27 326-352 23-49 (252)
201 2qt1_A Nicotinamide riboside k 96.0 0.0031 1.1E-07 57.6 3.2 32 326-357 22-54 (207)
202 3lda_A DNA repair protein RAD5 96.0 0.015 5.2E-07 59.9 8.4 25 323-347 176-200 (400)
203 1pzn_A RAD51, DNA repair and r 95.9 0.0081 2.8E-07 60.5 5.9 27 323-349 129-155 (349)
204 3jvv_A Twitching mobility prot 95.9 0.02 6.7E-07 58.2 8.5 24 326-349 124-147 (356)
205 1v5w_A DMC1, meiotic recombina 95.8 0.016 5.3E-07 58.1 7.6 25 324-348 121-145 (343)
206 3fdi_A Uncharacterized protein 95.8 0.0058 2E-07 56.7 3.9 30 326-355 7-36 (201)
207 3foz_A TRNA delta(2)-isopenten 95.8 0.0053 1.8E-07 61.7 3.9 33 326-358 11-43 (316)
208 2yvu_A Probable adenylyl-sulfa 95.8 0.0049 1.7E-07 55.3 3.4 37 325-361 13-52 (186)
209 2j41_A Guanylate kinase; GMP, 95.8 0.0051 1.8E-07 55.5 3.5 25 325-349 6-30 (207)
210 2bdt_A BH3686; alpha-beta prot 95.7 0.0069 2.4E-07 54.4 4.1 25 327-351 4-28 (189)
211 1xp8_A RECA protein, recombina 95.7 0.017 5.8E-07 58.9 7.4 78 323-404 72-166 (366)
212 3zvl_A Bifunctional polynucleo 95.7 0.005 1.7E-07 63.4 3.5 32 325-356 258-289 (416)
213 3exa_A TRNA delta(2)-isopenten 95.7 0.0065 2.2E-07 61.2 4.2 33 326-358 4-36 (322)
214 2axn_A 6-phosphofructo-2-kinas 95.7 0.014 4.7E-07 62.2 6.9 36 325-360 35-73 (520)
215 3tau_A Guanylate kinase, GMP k 95.7 0.0058 2E-07 56.4 3.6 26 325-350 8-33 (208)
216 1kgd_A CASK, peripheral plasma 95.7 0.0064 2.2E-07 54.7 3.7 25 326-350 6-30 (180)
217 3d3q_A TRNA delta(2)-isopenten 95.7 0.0058 2E-07 62.0 3.8 32 327-358 9-40 (340)
218 2qmh_A HPR kinase/phosphorylas 95.7 0.0051 1.7E-07 58.3 3.1 37 321-358 30-66 (205)
219 3c8u_A Fructokinase; YP_612366 95.7 0.0054 1.9E-07 56.4 3.1 26 325-350 22-47 (208)
220 3tr0_A Guanylate kinase, GMP k 95.6 0.0076 2.6E-07 54.4 3.7 25 325-349 7-31 (205)
221 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.021 7.1E-07 57.1 7.2 25 326-350 172-196 (330)
222 3asz_A Uridine kinase; cytidin 95.6 0.0066 2.3E-07 55.3 3.3 30 326-355 7-38 (211)
223 2f6r_A COA synthase, bifunctio 95.5 0.0064 2.2E-07 59.2 3.3 31 326-357 76-106 (281)
224 2zts_A Putative uncharacterize 95.4 0.023 8E-07 52.3 6.6 35 323-357 28-66 (251)
225 1bif_A 6-phosphofructo-2-kinas 95.4 0.044 1.5E-06 57.0 9.4 27 325-351 39-65 (469)
226 2i1q_A DNA repair and recombin 95.4 0.014 4.9E-07 57.3 5.3 26 323-348 96-121 (322)
227 1vma_A Cell division protein F 95.4 0.059 2E-06 53.5 9.7 25 325-349 104-128 (306)
228 3a00_A Guanylate kinase, GMP k 95.4 0.0096 3.3E-07 53.7 3.6 25 326-350 2-26 (186)
229 1ex7_A Guanylate kinase; subst 95.2 0.015 5E-07 53.9 4.5 24 326-349 2-25 (186)
230 1x6v_B Bifunctional 3'-phospho 95.2 0.012 4.1E-07 64.2 4.5 38 325-362 52-92 (630)
231 3cmw_A Protein RECA, recombina 95.2 0.017 5.8E-07 69.4 5.8 82 323-404 730-824 (1706)
232 1lvg_A Guanylate kinase, GMP k 95.1 0.011 3.9E-07 54.1 3.5 25 325-349 4-28 (198)
233 1gtv_A TMK, thymidylate kinase 95.0 0.0062 2.1E-07 55.4 1.2 23 328-350 3-25 (214)
234 3eph_A TRNA isopentenyltransfe 95.0 0.013 4.4E-07 60.9 3.6 31 327-357 4-34 (409)
235 2a5y_B CED-4; apoptosis; HET: 95.0 0.069 2.3E-06 56.5 9.3 44 276-347 131-174 (549)
236 2j37_W Signal recognition part 94.9 0.16 5.6E-06 53.9 11.8 34 325-358 101-137 (504)
237 1rz3_A Hypothetical protein rb 94.8 0.024 8.2E-07 51.8 4.8 31 326-356 23-56 (201)
238 3hdt_A Putative kinase; struct 94.8 0.016 5.4E-07 55.0 3.6 30 326-355 15-44 (223)
239 3io5_A Recombination and repai 94.8 0.034 1.2E-06 56.2 6.1 76 327-404 30-125 (333)
240 3vkw_A Replicase large subunit 94.8 0.046 1.6E-06 57.3 7.2 23 326-348 162-184 (446)
241 3e70_C DPA, signal recognition 94.7 0.031 1.1E-06 56.0 5.6 26 324-349 128-153 (328)
242 1sky_E F1-ATPase, F1-ATP synth 94.7 0.022 7.7E-07 60.1 4.7 24 326-349 152-175 (473)
243 2jeo_A Uridine-cytidine kinase 94.7 0.017 5.9E-07 54.4 3.5 27 326-352 26-52 (245)
244 3b9q_A Chloroplast SRP recepto 94.7 0.048 1.6E-06 53.9 6.8 25 325-349 100-124 (302)
245 1znw_A Guanylate kinase, GMP k 94.7 0.019 6.7E-07 52.6 3.7 25 325-349 20-44 (207)
246 1z6g_A Guanylate kinase; struc 94.7 0.02 6.7E-07 53.4 3.7 25 325-349 23-47 (218)
247 1xx6_A Thymidine kinase; NESG, 94.7 0.059 2E-06 49.9 6.9 31 326-356 9-42 (191)
248 3gmt_A Adenylate kinase; ssgci 94.6 0.018 6.2E-07 55.2 3.4 30 327-356 10-39 (230)
249 3ney_A 55 kDa erythrocyte memb 94.6 0.021 7.1E-07 53.4 3.7 26 325-350 19-44 (197)
250 4f4c_A Multidrug resistance pr 94.6 0.13 4.4E-06 60.6 11.2 28 323-350 442-469 (1321)
251 1tf7_A KAIC; homohexamer, hexa 94.5 0.075 2.6E-06 56.1 8.3 22 324-345 38-59 (525)
252 4eaq_A DTMP kinase, thymidylat 94.5 0.021 7E-07 54.0 3.4 31 325-355 26-58 (229)
253 3sfz_A APAF-1, apoptotic pepti 94.3 0.11 3.8E-06 58.7 9.4 45 275-348 126-170 (1249)
254 1odf_A YGR205W, hypothetical 3 94.2 0.058 2E-06 53.0 6.1 25 326-350 32-56 (290)
255 1s96_A Guanylate kinase, GMP k 94.2 0.028 9.5E-07 53.0 3.7 26 325-350 16-41 (219)
256 1g8f_A Sulfate adenylyltransfe 94.2 0.019 6.4E-07 61.2 2.7 26 326-351 396-421 (511)
257 2og2_A Putative signal recogni 94.2 0.069 2.3E-06 54.3 6.8 26 324-349 156-181 (359)
258 1htw_A HI0065; nucleotide-bind 94.2 0.028 9.5E-07 50.4 3.5 24 326-349 34-57 (158)
259 1m8p_A Sulfate adenylyltransfe 94.2 0.026 8.9E-07 60.8 3.8 37 326-362 397-437 (573)
260 1a7j_A Phosphoribulokinase; tr 94.2 0.012 4.3E-07 57.6 1.2 25 326-350 6-30 (290)
261 4gp7_A Metallophosphoesterase; 94.1 0.024 8.3E-07 50.6 3.0 19 326-344 10-28 (171)
262 1zu4_A FTSY; GTPase, signal re 94.1 0.07 2.4E-06 53.2 6.6 25 325-349 105-129 (320)
263 2j9r_A Thymidine kinase; TK1, 94.1 0.15 5.2E-06 48.4 8.5 32 326-357 29-63 (214)
264 3lnc_A Guanylate kinase, GMP k 93.9 0.021 7.3E-07 53.1 2.2 25 325-349 27-52 (231)
265 2yhs_A FTSY, cell division pro 93.9 0.061 2.1E-06 57.2 5.9 25 325-349 293-317 (503)
266 2i3b_A HCR-ntpase, human cance 93.8 0.036 1.2E-06 51.0 3.6 23 327-349 3-25 (189)
267 1p5z_B DCK, deoxycytidine kina 93.8 0.017 5.9E-07 54.9 1.4 25 326-350 25-49 (263)
268 2eyu_A Twitching motility prot 93.7 0.035 1.2E-06 53.6 3.4 25 325-349 25-49 (261)
269 1nlf_A Regulatory protein REPA 93.7 0.035 1.2E-06 53.2 3.4 26 324-349 29-54 (279)
270 2iut_A DNA translocase FTSK; n 93.7 0.3 1E-05 52.8 10.8 35 325-359 214-255 (574)
271 1w4r_A Thymidine kinase; type 93.6 0.17 5.7E-06 47.4 7.8 34 326-359 21-57 (195)
272 2v9p_A Replication protein E1; 93.6 0.039 1.3E-06 54.9 3.6 25 325-349 126-150 (305)
273 2fwr_A DNA repair protein RAD2 93.5 0.072 2.4E-06 54.5 5.6 34 326-359 109-142 (472)
274 1z6t_A APAF-1, apoptotic prote 93.5 0.058 2E-06 56.9 4.9 44 275-347 126-169 (591)
275 1c9k_A COBU, adenosylcobinamid 93.4 0.047 1.6E-06 50.4 3.6 32 328-360 2-33 (180)
276 1sq5_A Pantothenate kinase; P- 93.4 0.044 1.5E-06 53.9 3.6 25 326-350 81-105 (308)
277 3kta_A Chromosome segregation 93.4 0.057 1.9E-06 47.9 3.9 28 323-350 24-51 (182)
278 2ocp_A DGK, deoxyguanosine kin 93.3 0.042 1.4E-06 51.5 3.2 25 326-350 3-27 (241)
279 1cr0_A DNA primase/helicase; R 93.3 0.045 1.5E-06 52.8 3.4 26 324-349 34-59 (296)
280 4f4c_A Multidrug resistance pr 93.3 0.1 3.5E-06 61.4 6.9 28 323-350 1103-1130(1321)
281 3cr8_A Sulfate adenylyltranfer 93.1 0.038 1.3E-06 59.4 2.8 37 325-361 369-409 (552)
282 3aez_A Pantothenate kinase; tr 93.1 0.048 1.7E-06 54.1 3.4 25 325-349 90-114 (312)
283 1rj9_A FTSY, signal recognitio 93.0 0.055 1.9E-06 53.5 3.6 26 324-349 101-126 (304)
284 4i1u_A Dephospho-COA kinase; s 93.0 0.059 2E-06 50.9 3.6 31 327-358 11-41 (210)
285 3tqf_A HPR(Ser) kinase; transf 92.9 0.052 1.8E-06 50.4 3.0 28 321-348 12-39 (181)
286 3ice_A Transcription terminati 92.9 0.14 4.7E-06 53.3 6.3 25 325-349 174-198 (422)
287 3tif_A Uncharacterized ABC tra 92.8 0.047 1.6E-06 51.8 2.6 28 322-349 28-55 (235)
288 4b3f_X DNA-binding protein smu 92.7 0.099 3.4E-06 56.5 5.4 21 327-347 207-228 (646)
289 4edh_A DTMP kinase, thymidylat 92.7 0.062 2.1E-06 50.4 3.3 25 326-350 7-31 (213)
290 1hv8_A Putative ATP-dependent 92.7 0.2 6.7E-06 48.4 6.9 22 326-347 45-66 (367)
291 3v9p_A DTMP kinase, thymidylat 92.6 0.058 2E-06 51.3 3.0 25 325-349 25-49 (227)
292 2r8r_A Sensor protein; KDPD, P 92.6 0.094 3.2E-06 50.3 4.5 33 326-358 7-42 (228)
293 2cbz_A Multidrug resistance-as 92.6 0.048 1.6E-06 51.8 2.4 27 323-349 29-55 (237)
294 2gza_A Type IV secretion syste 92.6 0.058 2E-06 54.4 3.2 25 326-350 176-200 (361)
295 2ewv_A Twitching motility prot 92.5 0.063 2.1E-06 54.5 3.3 24 326-349 137-160 (372)
296 2xau_A PRE-mRNA-splicing facto 92.5 0.2 6.7E-06 55.7 7.6 22 326-347 110-131 (773)
297 2pcj_A ABC transporter, lipopr 92.4 0.052 1.8E-06 51.1 2.4 26 324-349 29-54 (224)
298 2px0_A Flagellar biosynthesis 92.4 0.07 2.4E-06 52.5 3.4 26 324-349 104-129 (296)
299 3tqc_A Pantothenate kinase; bi 92.4 0.07 2.4E-06 53.4 3.4 25 326-350 93-117 (321)
300 1lw7_A Transcriptional regulat 92.4 0.065 2.2E-06 53.7 3.2 27 326-352 171-197 (365)
301 3dkp_A Probable ATP-dependent 92.4 0.36 1.2E-05 44.7 8.1 19 325-343 66-84 (245)
302 1xjc_A MOBB protein homolog; s 92.4 0.075 2.6E-06 48.5 3.3 24 326-349 5-28 (169)
303 3tmk_A Thymidylate kinase; pho 92.3 0.11 3.9E-06 48.9 4.6 28 325-352 5-32 (216)
304 1wp9_A ATP-dependent RNA helic 92.3 0.29 9.8E-06 48.5 7.7 32 327-358 25-60 (494)
305 3lv8_A DTMP kinase, thymidylat 92.2 0.078 2.7E-06 50.7 3.4 25 325-349 27-51 (236)
306 1j8m_F SRP54, signal recogniti 92.2 0.13 4.5E-06 50.6 5.0 34 325-358 98-134 (297)
307 3b85_A Phosphate starvation-in 92.2 0.064 2.2E-06 50.1 2.7 23 326-348 23-45 (208)
308 2dyk_A GTP-binding protein; GT 92.2 0.081 2.8E-06 44.8 3.1 22 327-348 3-24 (161)
309 1g6h_A High-affinity branched- 92.1 0.067 2.3E-06 51.3 2.7 27 323-349 31-57 (257)
310 2d2e_A SUFC protein; ABC-ATPas 92.1 0.077 2.6E-06 50.7 3.1 25 324-348 28-52 (250)
311 1sgw_A Putative ABC transporte 92.0 0.067 2.3E-06 50.3 2.6 27 323-349 33-59 (214)
312 1np6_A Molybdopterin-guanine d 92.0 0.086 3E-06 48.0 3.3 24 326-349 7-30 (174)
313 1b0u_A Histidine permease; ABC 92.0 0.066 2.3E-06 51.7 2.6 27 323-349 30-56 (262)
314 2pze_A Cystic fibrosis transme 92.0 0.063 2.1E-06 50.7 2.4 27 323-349 32-58 (229)
315 2zu0_C Probable ATP-dependent 92.0 0.08 2.7E-06 51.2 3.2 27 323-349 44-70 (267)
316 2f9l_A RAB11B, member RAS onco 92.0 0.089 3E-06 47.2 3.3 23 326-348 6-28 (199)
317 1oix_A RAS-related protein RAB 92.0 0.082 2.8E-06 47.4 3.0 24 326-349 30-53 (191)
318 2ff7_A Alpha-hemolysin translo 91.9 0.062 2.1E-06 51.4 2.3 27 323-349 33-59 (247)
319 2f1r_A Molybdopterin-guanine d 91.9 0.049 1.7E-06 49.4 1.5 24 327-350 4-27 (171)
320 3gfo_A Cobalt import ATP-bindi 91.9 0.063 2.2E-06 52.4 2.3 27 323-349 32-58 (275)
321 2onk_A Molybdate/tungstate ABC 91.9 0.083 2.9E-06 50.4 3.1 24 326-349 25-48 (240)
322 2ixe_A Antigen peptide transpo 91.9 0.066 2.3E-06 52.0 2.4 26 324-349 44-69 (271)
323 2oap_1 GSPE-2, type II secreti 91.8 0.073 2.5E-06 56.5 2.9 25 326-350 261-285 (511)
324 2ged_A SR-beta, signal recogni 91.8 0.16 5.5E-06 44.7 4.8 24 326-349 49-72 (193)
325 4g1u_C Hemin import ATP-bindin 91.8 0.071 2.4E-06 51.7 2.6 27 323-349 35-61 (266)
326 1z2a_A RAS-related protein RAB 91.8 0.1 3.4E-06 44.5 3.3 23 326-348 6-28 (168)
327 1nrj_B SR-beta, signal recogni 91.8 0.1 3.6E-06 47.1 3.6 25 325-349 12-36 (218)
328 3fvq_A Fe(3+) IONS import ATP- 91.8 0.078 2.7E-06 54.0 2.9 26 324-349 29-54 (359)
329 3lxx_A GTPase IMAP family memb 91.8 0.39 1.3E-05 44.5 7.6 23 325-347 29-51 (239)
330 3sop_A Neuronal-specific septi 91.7 0.084 2.9E-06 51.2 3.0 23 327-349 4-26 (270)
331 2ghi_A Transport protein; mult 91.7 0.07 2.4E-06 51.4 2.5 27 323-349 44-70 (260)
332 1ji0_A ABC transporter; ATP bi 91.7 0.075 2.6E-06 50.5 2.6 26 324-349 31-56 (240)
333 1mv5_A LMRA, multidrug resista 91.7 0.072 2.5E-06 50.6 2.4 27 323-349 26-52 (243)
334 2ihy_A ABC transporter, ATP-bi 91.7 0.068 2.3E-06 52.2 2.3 27 323-349 45-71 (279)
335 2olj_A Amino acid ABC transpor 91.7 0.077 2.6E-06 51.4 2.6 26 324-349 49-74 (263)
336 1z47_A CYSA, putative ABC-tran 91.6 0.09 3.1E-06 53.4 3.2 27 323-349 39-65 (355)
337 2ce2_X GTPase HRAS; signaling 91.6 0.1 3.4E-06 44.0 3.0 23 326-348 4-26 (166)
338 2ffh_A Protein (FFH); SRP54, s 91.5 0.32 1.1E-05 50.6 7.3 26 324-349 97-122 (425)
339 1kao_A RAP2A; GTP-binding prot 91.5 0.11 3.8E-06 43.9 3.3 23 326-348 4-26 (167)
340 2qi9_C Vitamin B12 import ATP- 91.5 0.086 2.9E-06 50.6 2.7 26 324-349 25-50 (249)
341 1u8z_A RAS-related protein RAL 91.5 0.12 3.9E-06 43.8 3.3 23 326-348 5-27 (168)
342 1q57_A DNA primase/helicase; d 91.4 0.67 2.3E-05 48.3 9.7 36 324-359 241-280 (503)
343 3rlf_A Maltose/maltodextrin im 91.4 0.096 3.3E-06 53.8 3.2 26 324-349 28-53 (381)
344 1p9r_A General secretion pathw 91.4 0.11 3.6E-06 53.9 3.5 25 326-350 168-192 (418)
345 1vpl_A ABC transporter, ATP-bi 91.4 0.085 2.9E-06 50.9 2.6 27 323-349 39-65 (256)
346 2it1_A 362AA long hypothetical 91.3 0.1 3.4E-06 53.2 3.2 26 324-349 28-53 (362)
347 2yz2_A Putative ABC transporte 91.3 0.088 3E-06 50.8 2.6 27 323-349 31-57 (266)
348 1ek0_A Protein (GTP-binding pr 91.3 0.12 4.2E-06 43.9 3.3 23 326-348 4-26 (170)
349 2yyz_A Sugar ABC transporter, 91.2 0.1 3.5E-06 53.0 3.2 26 324-349 28-53 (359)
350 3ld9_A DTMP kinase, thymidylat 91.2 0.11 3.9E-06 49.2 3.3 27 325-351 21-47 (223)
351 1z0j_A RAB-22, RAS-related pro 91.2 0.13 4.3E-06 43.9 3.3 23 326-348 7-29 (170)
352 2nq2_C Hypothetical ABC transp 91.2 0.081 2.8E-06 50.8 2.2 27 323-349 29-55 (253)
353 1v43_A Sugar-binding transport 91.2 0.1 3.5E-06 53.2 3.2 26 324-349 36-61 (372)
354 2lkc_A Translation initiation 91.2 0.13 4.6E-06 44.3 3.4 23 325-347 8-30 (178)
355 1g29_1 MALK, maltose transport 91.1 0.1 3.6E-06 53.2 3.1 26 324-349 28-53 (372)
356 2nzj_A GTP-binding protein REM 91.1 0.12 4.2E-06 44.3 3.1 22 326-347 5-26 (175)
357 2gks_A Bifunctional SAT/APS ki 91.1 0.11 3.6E-06 55.7 3.2 38 325-362 372-412 (546)
358 2zej_A Dardarin, leucine-rich 91.1 0.1 3.5E-06 46.2 2.6 21 327-347 4-24 (184)
359 1z08_A RAS-related protein RAB 91.0 0.13 4.6E-06 43.8 3.3 23 326-348 7-29 (170)
360 4tmk_A Protein (thymidylate ki 90.9 0.13 4.5E-06 48.2 3.4 24 326-349 4-27 (213)
361 2wji_A Ferrous iron transport 90.9 0.13 4.4E-06 44.7 3.1 22 326-347 4-25 (165)
362 3tbk_A RIG-I helicase domain; 90.9 0.48 1.7E-05 48.5 7.9 22 326-347 20-41 (555)
363 1ky3_A GTP-binding protein YPT 90.9 0.14 4.7E-06 44.2 3.3 23 326-348 9-31 (182)
364 2erx_A GTP-binding protein DI- 90.9 0.13 4.3E-06 43.9 2.9 22 326-347 4-25 (172)
365 1wms_A RAB-9, RAB9, RAS-relate 90.9 0.14 4.8E-06 44.2 3.3 22 326-347 8-29 (177)
366 3bc1_A RAS-related protein RAB 90.8 0.14 4.8E-06 44.6 3.3 22 326-347 12-33 (195)
367 1r2q_A RAS-related protein RAB 90.8 0.14 4.9E-06 43.4 3.3 22 326-347 7-28 (170)
368 2v6i_A RNA helicase; membrane, 90.8 0.42 1.4E-05 49.0 7.3 17 326-342 3-19 (431)
369 1g16_A RAS-related protein SEC 90.8 0.13 4.6E-06 43.7 3.0 22 326-347 4-25 (170)
370 1upt_A ARL1, ADP-ribosylation 90.8 0.15 5.2E-06 43.5 3.4 22 326-347 8-29 (171)
371 1c1y_A RAS-related protein RAP 90.7 0.15 5E-06 43.3 3.3 22 326-347 4-25 (167)
372 3d31_A Sulfate/molybdate ABC t 90.7 0.092 3.1E-06 53.1 2.2 26 324-349 25-50 (348)
373 3p32_A Probable GTPase RV1496/ 90.7 0.18 6.3E-06 50.4 4.4 24 326-349 80-103 (355)
374 2wjg_A FEOB, ferrous iron tran 90.6 0.14 4.8E-06 44.8 3.1 22 326-347 8-29 (188)
375 3gd7_A Fusion complex of cysti 90.6 0.12 4.1E-06 53.1 3.0 27 323-349 45-71 (390)
376 4gl2_A Interferon-induced heli 90.6 0.23 7.9E-06 53.3 5.4 23 326-348 23-45 (699)
377 3q85_A GTP-binding protein REM 90.6 0.14 4.9E-06 43.7 3.1 21 327-347 4-24 (169)
378 1r8s_A ADP-ribosylation factor 90.5 0.16 5.4E-06 43.2 3.3 21 327-347 2-22 (164)
379 2vp4_A Deoxynucleoside kinase; 90.5 0.1 3.5E-06 48.6 2.2 24 325-348 20-43 (230)
380 2xxa_A Signal recognition part 90.5 0.41 1.4E-05 49.7 7.0 35 325-359 100-138 (433)
381 1z0f_A RAB14, member RAS oncog 90.5 0.16 5.4E-06 43.7 3.3 23 326-348 16-38 (179)
382 2a9k_A RAS-related protein RAL 90.5 0.16 5.4E-06 44.0 3.3 22 326-347 19-40 (187)
383 2pjz_A Hypothetical protein ST 90.4 0.13 4.3E-06 49.9 2.8 25 325-349 30-54 (263)
384 2npi_A Protein CLP1; CLP1-PCF1 90.4 0.14 4.9E-06 53.6 3.4 25 325-349 138-162 (460)
385 2hxs_A RAB-26, RAS-related pro 90.4 0.16 5.3E-06 43.9 3.1 22 326-347 7-28 (178)
386 4ag6_A VIRB4 ATPase, type IV s 90.3 0.24 8.3E-06 49.8 4.9 26 324-349 34-59 (392)
387 2gk6_A Regulator of nonsense t 90.3 0.15 5.1E-06 55.1 3.5 23 326-348 196-218 (624)
388 3q72_A GTP-binding protein RAD 90.3 0.14 4.8E-06 43.7 2.7 22 326-347 3-24 (166)
389 3con_A GTPase NRAS; structural 90.3 0.17 5.7E-06 44.5 3.3 23 326-348 22-44 (190)
390 2fn4_A P23, RAS-related protei 90.2 0.16 5.5E-06 43.7 3.0 23 326-348 10-32 (181)
391 3rc3_A ATP-dependent RNA helic 90.2 0.52 1.8E-05 51.7 7.8 21 324-344 154-174 (677)
392 3t1o_A Gliding protein MGLA; G 90.2 0.17 5.9E-06 44.2 3.3 24 326-349 15-38 (198)
393 4dsu_A GTPase KRAS, isoform 2B 90.1 0.17 5.9E-06 43.9 3.3 23 326-348 5-27 (189)
394 2y8e_A RAB-protein 6, GH09086P 90.1 0.16 5.6E-06 43.6 3.0 22 326-347 15-36 (179)
395 3tw8_B RAS-related protein RAB 90.1 0.16 5.4E-06 43.8 2.9 22 326-347 10-31 (181)
396 2wsm_A Hydrogenase expression/ 90.1 0.15 5.1E-06 46.3 2.9 24 326-349 31-54 (221)
397 3clv_A RAB5 protein, putative; 90.1 0.17 6E-06 44.1 3.3 23 326-348 8-30 (208)
398 1oxx_K GLCV, glucose, ABC tran 90.0 0.092 3.1E-06 53.2 1.5 26 324-349 30-55 (353)
399 2oil_A CATX-8, RAS-related pro 90.0 0.18 6.2E-06 44.5 3.3 22 326-347 26-47 (193)
400 2efe_B Small GTP-binding prote 90.0 0.18 6.3E-06 43.5 3.3 23 326-348 13-35 (181)
401 3nh6_A ATP-binding cassette SU 89.9 0.091 3.1E-06 52.2 1.4 27 323-349 78-104 (306)
402 3kkq_A RAS-related protein M-R 89.9 0.19 6.4E-06 43.8 3.3 23 326-348 19-41 (183)
403 2bbs_A Cystic fibrosis transme 89.9 0.12 4.2E-06 50.8 2.2 27 323-349 62-88 (290)
404 4a2p_A RIG-I, retinoic acid in 89.9 0.6 2.1E-05 48.0 7.6 22 326-347 23-44 (556)
405 2v3c_C SRP54, signal recogniti 89.8 0.14 4.9E-06 53.1 2.8 34 325-358 99-135 (432)
406 2g6b_A RAS-related protein RAB 89.8 0.19 6.6E-06 43.4 3.3 22 326-347 11-32 (180)
407 2bme_A RAB4A, RAS-related prot 89.7 0.18 6.2E-06 43.9 3.0 23 326-348 11-33 (186)
408 1m7b_A RND3/RHOE small GTP-bin 89.7 0.18 6.1E-06 44.3 3.0 23 326-348 8-30 (184)
409 1mh1_A RAC1; GTP-binding, GTPa 89.7 0.2 6.9E-06 43.4 3.3 22 326-347 6-27 (186)
410 2zj8_A DNA helicase, putative 89.7 0.79 2.7E-05 49.8 8.7 19 325-343 39-57 (720)
411 1yrb_A ATP(GTP)binding protein 89.6 0.29 9.8E-06 45.7 4.5 32 326-357 15-48 (262)
412 2cxx_A Probable GTP-binding pr 89.6 0.17 6E-06 44.1 2.9 22 327-348 3-24 (190)
413 3o8b_A HCV NS3 protease/helica 89.6 0.69 2.4E-05 50.7 8.1 35 324-358 231-265 (666)
414 2gj8_A MNME, tRNA modification 89.5 0.17 5.9E-06 44.4 2.7 23 326-348 5-27 (172)
415 3tkl_A RAS-related protein RAB 89.5 0.21 7.1E-06 43.9 3.3 23 326-348 17-39 (196)
416 3thx_B DNA mismatch repair pro 89.5 0.24 8E-06 56.4 4.5 23 325-347 673-695 (918)
417 1m2o_B GTP-binding protein SAR 89.5 0.2 6.8E-06 44.7 3.1 22 326-347 24-45 (190)
418 3bh0_A DNAB-like replicative h 89.4 0.21 7.3E-06 49.1 3.6 35 323-357 66-103 (315)
419 1svi_A GTP-binding protein YSX 89.4 0.19 6.6E-06 44.2 3.0 24 325-348 23-46 (195)
420 1wb9_A DNA mismatch repair pro 89.4 0.47 1.6E-05 53.1 6.7 25 324-348 606-630 (800)
421 3thx_A DNA mismatch repair pro 89.4 0.24 8.3E-06 56.3 4.5 23 325-347 662-684 (934)
422 4hlc_A DTMP kinase, thymidylat 89.4 0.21 7.1E-06 46.4 3.3 23 328-350 5-27 (205)
423 2dpy_A FLII, flagellum-specifi 89.3 0.3 1E-05 50.8 4.8 27 326-352 158-184 (438)
424 1x3s_A RAS-related protein RAB 89.3 0.22 7.5E-06 43.6 3.3 23 326-348 16-38 (195)
425 2gf9_A RAS-related protein RAB 89.3 0.22 7.5E-06 43.9 3.3 23 326-348 23-45 (189)
426 2bov_A RAla, RAS-related prote 89.3 0.22 7.5E-06 44.1 3.3 22 326-347 15-36 (206)
427 2obl_A ESCN; ATPase, hydrolase 89.2 0.31 1E-05 49.1 4.6 27 326-352 72-98 (347)
428 2qm8_A GTPase/ATPase; G protei 89.2 0.2 6.7E-06 50.1 3.2 25 325-349 55-79 (337)
429 2hf9_A Probable hydrogenase ni 89.2 0.21 7E-06 45.5 3.1 24 326-349 39-62 (226)
430 3bwd_D RAC-like GTP-binding pr 89.1 0.26 8.8E-06 42.6 3.6 23 326-348 9-31 (182)
431 1vg8_A RAS-related protein RAB 89.0 0.23 7.9E-06 44.1 3.3 23 326-348 9-31 (207)
432 1tf7_A KAIC; homohexamer, hexa 89.0 0.21 7.1E-06 52.7 3.4 25 325-349 281-305 (525)
433 2atv_A RERG, RAS-like estrogen 89.0 0.23 8E-06 44.1 3.3 23 326-348 29-51 (196)
434 3e2i_A Thymidine kinase; Zn-bi 89.0 0.42 1.4E-05 45.5 5.2 32 326-357 29-63 (219)
435 3t5g_A GTP-binding protein RHE 89.0 0.22 7.6E-06 43.2 3.0 22 326-347 7-28 (181)
436 3pqc_A Probable GTP-binding pr 89.0 0.2 6.7E-06 43.8 2.7 23 326-348 24-46 (195)
437 1z06_A RAS-related protein RAB 88.9 0.24 8.2E-06 43.6 3.3 22 326-347 21-42 (189)
438 2a5j_A RAS-related protein RAB 88.9 0.25 8.4E-06 43.7 3.3 22 326-347 22-43 (191)
439 1zd9_A ADP-ribosylation factor 88.8 0.25 8.4E-06 43.7 3.3 23 325-347 22-44 (188)
440 2hup_A RAS-related protein RAB 88.8 0.2 6.9E-06 45.0 2.7 22 326-347 30-51 (201)
441 1ko7_A HPR kinase/phosphatase; 88.8 0.23 7.9E-06 49.7 3.4 28 321-348 140-167 (314)
442 3c5c_A RAS-like protein 12; GD 88.8 0.25 8.4E-06 43.8 3.3 22 326-347 22-43 (187)
443 1zbd_A Rabphilin-3A; G protein 88.8 0.22 7.6E-06 44.3 2.9 22 326-347 9-30 (203)
444 2v1x_A ATP-dependent DNA helic 88.8 0.57 2E-05 50.3 6.7 23 326-348 60-82 (591)
445 2p5s_A RAS and EF-hand domain 88.7 0.25 8.6E-06 44.1 3.3 23 325-347 28-50 (199)
446 2fg5_A RAB-22B, RAS-related pr 88.7 0.23 7.9E-06 44.0 3.0 23 326-348 24-46 (192)
447 3ihw_A Centg3; RAS, centaurin, 88.7 0.25 8.6E-06 43.8 3.3 23 326-348 21-43 (184)
448 3tui_C Methionine import ATP-b 88.7 0.22 7.5E-06 50.9 3.2 27 323-349 52-78 (366)
449 3dz8_A RAS-related protein RAB 88.7 0.23 8E-06 43.9 3.0 24 326-349 24-47 (191)
450 3reg_A RHO-like small GTPase; 88.7 0.25 8.7E-06 43.6 3.3 23 326-348 24-46 (194)
451 1pui_A ENGB, probable GTP-bind 88.7 0.13 4.3E-06 46.2 1.2 24 325-348 26-49 (210)
452 3hjn_A DTMP kinase, thymidylat 88.6 0.25 8.7E-06 45.4 3.3 28 328-355 3-33 (197)
453 1gm5_A RECG; helicase, replica 88.6 0.61 2.1E-05 52.0 6.9 22 326-347 390-411 (780)
454 2iwr_A Centaurin gamma 1; ANK 88.5 0.19 6.7E-06 43.5 2.3 23 326-348 8-30 (178)
455 2eyq_A TRCF, transcription-rep 88.5 1.9 6.5E-05 50.0 11.2 21 326-346 625-645 (1151)
456 1ewq_A DNA mismatch repair pro 88.4 0.3 1E-05 54.4 4.3 24 325-348 576-599 (765)
457 3oes_A GTPase rhebl1; small GT 88.4 0.25 8.5E-06 44.1 3.0 24 325-348 24-47 (201)
458 2gf0_A GTP-binding protein DI- 88.4 0.25 8.7E-06 43.4 3.0 22 326-347 9-30 (199)
459 2r6a_A DNAB helicase, replicat 88.3 0.27 9.2E-06 50.8 3.6 35 324-358 202-240 (454)
460 1f2t_A RAD50 ABC-ATPase; DNA d 88.3 0.28 9.5E-06 43.0 3.2 26 324-349 22-47 (149)
461 2bcg_Y Protein YP2, GTP-bindin 88.3 0.26 8.7E-06 44.1 3.0 22 326-347 9-30 (206)
462 3cph_A RAS-related protein SEC 88.3 0.28 9.6E-06 43.8 3.3 22 326-347 21-42 (213)
463 1knx_A Probable HPR(Ser) kinas 88.2 0.21 7.3E-06 49.9 2.7 28 320-347 142-169 (312)
464 1ksh_A ARF-like protein 2; sma 88.2 0.26 8.9E-06 43.1 2.9 22 326-347 19-40 (186)
465 2fh5_B SR-beta, signal recogni 88.1 0.29 9.9E-06 44.0 3.3 23 326-348 8-30 (214)
466 1moz_A ARL1, ADP-ribosylation 88.0 0.19 6.5E-06 43.6 2.0 22 325-346 18-39 (183)
467 2wjy_A Regulator of nonsense t 88.0 0.27 9.2E-06 55.0 3.6 24 325-348 371-394 (800)
468 1ls1_A Signal recognition part 88.0 0.28 9.6E-06 48.0 3.3 26 324-349 97-122 (295)
469 1gwn_A RHO-related GTP-binding 87.9 0.28 9.6E-06 44.6 3.0 23 326-348 29-51 (205)
470 1dek_A Deoxynucleoside monopho 87.8 0.25 8.4E-06 47.5 2.7 27 328-354 4-30 (241)
471 2h57_A ADP-ribosylation factor 87.8 0.21 7.3E-06 44.0 2.1 24 325-348 21-44 (190)
472 1f6b_A SAR1; gtpases, N-termin 87.8 0.25 8.7E-06 44.4 2.7 22 326-347 26-47 (198)
473 2ew1_A RAS-related protein RAB 87.7 0.29 9.9E-06 44.4 3.0 23 326-348 27-49 (201)
474 2www_A Methylmalonic aciduria 87.7 0.94 3.2E-05 45.3 7.1 24 326-349 75-98 (349)
475 2ykg_A Probable ATP-dependent 87.7 1 3.5E-05 48.2 7.8 22 326-347 29-50 (696)
476 2atx_A Small GTP binding prote 87.7 0.3 1E-05 43.1 3.0 23 326-348 19-41 (194)
477 4bas_A ADP-ribosylation factor 87.7 0.29 9.9E-06 43.1 2.9 23 325-347 17-39 (199)
478 2f7s_A C25KG, RAS-related prot 87.6 0.31 1.1E-05 43.9 3.1 22 326-347 26-47 (217)
479 2h17_A ADP-ribosylation factor 87.6 0.25 8.7E-06 43.2 2.5 22 326-347 22-43 (181)
480 1zj6_A ADP-ribosylation factor 87.6 0.29 1E-05 43.0 2.9 22 326-347 17-38 (187)
481 2il1_A RAB12; G-protein, GDP, 87.5 0.3 1E-05 43.4 2.9 22 326-347 27-48 (192)
482 2q3h_A RAS homolog gene family 87.5 0.32 1.1E-05 43.2 3.1 23 325-347 20-42 (201)
483 1fzq_A ADP-ribosylation factor 87.5 0.28 9.6E-06 43.2 2.7 23 326-348 17-39 (181)
484 3k53_A Ferrous iron transport 87.4 0.28 9.6E-06 46.7 2.9 23 326-348 4-26 (271)
485 2fu5_C RAS-related protein RAB 87.4 0.19 6.7E-06 43.7 1.6 22 326-347 9-30 (183)
486 4a1f_A DNAB helicase, replicat 87.4 0.39 1.3E-05 48.4 4.0 35 324-358 45-82 (338)
487 2fv8_A H6, RHO-related GTP-bin 87.2 0.32 1.1E-05 43.7 3.0 23 325-347 25-47 (207)
488 2o52_A RAS-related protein RAB 87.2 0.31 1.1E-05 43.7 2.9 22 326-347 26-47 (200)
489 2qnr_A Septin-2, protein NEDD5 87.1 0.27 9.3E-06 48.1 2.6 23 326-348 19-41 (301)
490 3l9o_A ATP-dependent RNA helic 87.1 1 3.5E-05 52.0 7.8 21 326-346 200-220 (1108)
491 2jlq_A Serine protease subunit 87.0 0.91 3.1E-05 46.7 6.7 17 324-340 18-34 (451)
492 2gco_A H9, RHO-related GTP-bin 87.0 0.34 1.2E-05 43.3 3.0 23 325-347 25-47 (201)
493 2p67_A LAO/AO transport system 87.0 0.32 1.1E-05 48.4 3.1 25 325-349 56-80 (341)
494 2yv5_A YJEQ protein; hydrolase 86.9 0.37 1.3E-05 47.2 3.4 25 325-350 165-189 (302)
495 2j0v_A RAC-like GTP-binding pr 86.9 0.35 1.2E-05 43.4 3.0 22 326-347 10-31 (212)
496 3cbq_A GTP-binding protein REM 86.8 0.29 9.8E-06 44.0 2.4 21 326-346 24-44 (195)
497 1e9r_A Conjugal transfer prote 86.8 0.44 1.5E-05 48.5 4.1 35 324-358 52-89 (437)
498 3llm_A ATP-dependent RNA helic 86.7 0.39 1.3E-05 44.7 3.3 22 325-346 76-97 (235)
499 2b6h_A ADP-ribosylation factor 86.7 0.32 1.1E-05 43.3 2.7 23 325-347 29-51 (192)
500 2qag_B Septin-6, protein NEDD5 86.6 0.3 1E-05 50.8 2.8 21 328-348 45-65 (427)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.86 E-value=4.3e-22 Score=201.25 Aligned_cols=179 Identities=60% Similarity=0.919 Sum_probs=134.3
Q ss_pred CCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchH
Q 012525 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKT 339 (461)
Q Consensus 260 ~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKT 339 (461)
.++++.++.+.|++.|+||+.+++.|..++..++.+...... .......+.+|||+||||||||
T Consensus 2 ~~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~----------------~~~~~~~~~~vll~GppGtGKT 65 (363)
T 3hws_A 2 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT----------------SNGVELGKSNILLIGPTGSGKT 65 (363)
T ss_dssp CCCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSC----------------SSSCCCCCCCEEEECCTTSSHH
T ss_pred CCCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccc----------------cccccCCCCeEEEECCCCCCHH
Confidence 367899999999999999999999999999877765432111 1122334688999999999999
Q ss_pred HHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 340 LLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 340 tLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
++|++||+.++.+|+.++++.+...+|+|...+..+..++..+...+..+.++||||||||++...++..+.+.+.+.++
T Consensus 66 ~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~ 145 (363)
T 3hws_A 66 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEG 145 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHH
T ss_pred HHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHH
Confidence 99999999999999999999998777888877788888888877777777899999999999999877766677777778
Q ss_pred HHHHHHHHHhCceeeeecc-eeeecC-CeEEEecCCC
Q 012525 420 VQQALLKMLEGTETKTFAA-VSKVSR-DNLYIKTSGL 454 (461)
Q Consensus 420 v~~aLL~~LEg~~v~i~~~-~r~~~r-d~IiI~TsNi 454 (461)
+++.||++||+..+.+... .+.... +.++|+|+|.
T Consensus 146 ~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~ 182 (363)
T 3hws_A 146 VQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKI 182 (363)
T ss_dssp HHHHHHHHHHCC----------------CCCCCTTSS
T ss_pred HHHHHHHHhcCceeeccCccccccCCCceEEEECCCc
Confidence 9999999999665544332 222222 4556666665
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.84 E-value=2e-20 Score=189.65 Aligned_cols=178 Identities=55% Similarity=0.858 Sum_probs=117.0
Q ss_pred CCCCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCc
Q 012525 258 GEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSG 337 (461)
Q Consensus 258 ~~~l~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTG 337 (461)
-+.+++++++.+.|+++|+||+++|+.|..++.+++.+......-.. .....+.........+.....++||+||||||
T Consensus 6 ~~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~-~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtG 84 (376)
T 1um8_A 6 LSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKK-QDNQDSNVELEHLEEVELSKSNILLIGPTGSG 84 (376)
T ss_dssp CSCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHTTCCCCCEEEECCTTSS
T ss_pred hcCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccccccccccccccccCCCCEEEECCCCCC
Confidence 35678999999999999999999999999999877776543110000 00000111000111223346789999999999
Q ss_pred hHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccch
Q 012525 338 KTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (461)
Q Consensus 338 KTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~ 417 (461)
||++|++||+.++.+|+.+++..+...+++|...+..+..++......+..+.++||||||||++...+.......+.+.
T Consensus 85 KT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 164 (376)
T 1um8_A 85 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 164 (376)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred HHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccch
Confidence 99999999999999999999999887778887767777888877666666678899999999999988666555667777
Q ss_pred HHHHHHHHHHHhCceeeee
Q 012525 418 EGVQQALLKMLEGTETKTF 436 (461)
Q Consensus 418 ~~v~~aLL~~LEg~~v~i~ 436 (461)
+.++++|+++||+..+.+.
T Consensus 165 ~~~~~~Ll~~le~~~~~~~ 183 (376)
T 1um8_A 165 EGVQQALLKIVEGSLVNIP 183 (376)
T ss_dssp HHHHHHHHHHHHCCEEC--
T ss_pred HHHHHHHHHHhhccceecc
Confidence 7799999999998765443
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.6e-20 Score=193.30 Aligned_cols=149 Identities=25% Similarity=0.371 Sum_probs=118.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHH--HHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHY--KRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~--kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|++ |.|++++|+.|.++|..+. +.++..... ..+++||||||||||||+||+++|.
T Consensus 146 ~~~d-IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi--------------------~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 146 TYDM-VGGLTKQIKEIKEVIELPVKHPELFESLGI--------------------AQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CGGG-SCSCHHHHHHHHHHTHHHHHCHHHHHHHTC--------------------CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHHhCHHHHHhCCC--------------------CCCCceEEeCCCCCCHHHHHHHHHH
Confidence 4555 9999999999999987532 223322111 2358899999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+++.+|+.++++++. .+|+|+. +..++.+|..+... .++||||||||.+...|...+.+.+.....+++.||..
T Consensus 205 e~~~~f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 278 (405)
T 4b4t_J 205 HTDCKFIRVSGAELV-QKYIGEG-SRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ 278 (405)
T ss_dssp HHTCEEEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH
T ss_pred hhCCCceEEEhHHhh-ccccchH-HHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh
Confidence 999999999999999 4699988 89999999988754 79999999999999987665555555556688999999
Q ss_pred HhCceeeeecceeeecCCeEEEecCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
||+.... .+.++|+|||.
T Consensus 279 lDg~~~~---------~~V~vIaATNr 296 (405)
T 4b4t_J 279 LDGFETS---------KNIKIIMATNR 296 (405)
T ss_dssp HHTTTCC---------CCEEEEEEESC
T ss_pred hhccCCC---------CCeEEEeccCC
Confidence 9975421 25788888884
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-19 Score=189.84 Aligned_cols=149 Identities=25% Similarity=0.336 Sum_probs=117.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|++ |.|++++|+.|.+.+....+ .++.... ...+++||||||||||||+||++||.
T Consensus 180 ~~~D-IgGld~~k~~L~e~v~~Pl~~pe~f~~~G--------------------i~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 180 SYSD-IGGLESQIQEIKESVELPLTHPELYEEMG--------------------IKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CGGG-TCSCHHHHHHHHHHHHHHHHCCHHHHHHT--------------------CCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred ccee-cCcHHHHHHHHHHHHHHHHhCHHHHHhCC--------------------CCCCCCCceECCCCchHHHHHHHHHH
Confidence 5666 99999999999999964322 2222211 12358899999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+++.+|+.++.+++.. +|+|+. +..++.+|..+... .++||||||||.+...|...+...+.....+++.||..
T Consensus 239 e~~~~fi~v~~s~l~s-k~vGes-ek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~ 312 (437)
T 4b4t_I 239 QTSATFLRIVGSELIQ-KYLGDG-PRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 312 (437)
T ss_dssp HHTCEEEEEESGGGCC-SSSSHH-HHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH
T ss_pred HhCCCEEEEEHHHhhh-ccCchH-HHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH
Confidence 9999999999999994 699988 89999999887654 79999999999999998765555554555678888998
Q ss_pred HhCceeeeecceeeecCCeEEEecCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
||+.... .+.++|+|||.
T Consensus 313 lDg~~~~---------~~ViVIaATNr 330 (437)
T 4b4t_I 313 LDGFDDR---------GDVKVIMATNK 330 (437)
T ss_dssp HHHCCCS---------SSEEEEEEESC
T ss_pred hhCcCCC---------CCEEEEEeCCC
Confidence 8854321 25788888883
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=9.7e-20 Score=190.85 Aligned_cols=149 Identities=26% Similarity=0.376 Sum_probs=117.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|++ |.|++++|+.|.++|....+ .++.... ...+++||||||||||||+||++||.
T Consensus 179 ~~~d-igGl~~~k~~l~e~v~~pl~~p~~f~~~g--------------------~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 179 TFDG-IGGLTEQIRELREVIELPLKNPEIFQRVG--------------------IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CSGG-GCSCHHHHHHHHHHHHHHHHCHHHHHHHC--------------------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred ChhH-hCChHHHHHHHHHHHHHHHhCHHHHHhCC--------------------CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4555 89999999999999975322 2332211 12358899999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+++.+|+.++++++. .+|+|+. +..++.+|..+... .++||||||||.+..+|...+...+.....+++.||..
T Consensus 238 e~~~~~~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 311 (437)
T 4b4t_L 238 TIGANFIFSPASGIV-DKYIGES-ARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ 311 (437)
T ss_dssp HHTCEEEEEEGGGTC-CSSSSHH-HHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEehhhhc-cccchHH-HHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHHHHHHHHHHH
Confidence 999999999999998 4699988 88999999887654 89999999999999988665555554555678899999
Q ss_pred HhCceeeeecceeeecCCeEEEecCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
||+.... .+.++|+|||.
T Consensus 312 lDg~~~~---------~~vivI~ATNr 329 (437)
T 4b4t_L 312 MDGFDNL---------GQTKIIMATNR 329 (437)
T ss_dssp HHSSSCT---------TSSEEEEEESS
T ss_pred hhcccCC---------CCeEEEEecCC
Confidence 9975421 24688888883
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.9e-19 Score=188.43 Aligned_cols=149 Identities=26% Similarity=0.341 Sum_probs=116.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|++ |.|++++|+.|.+.+....+ .++... + ...+++||||||||||||+||+++|.
T Consensus 179 t~~d-igGl~~~k~~l~e~v~~pl~~pe~f~~~---g-----------------~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 179 TYSD-VGGLDKQIEELVEAIVLPMKRADKFKDM---G-----------------IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CGGG-SCSCHHHHHHHHHHTHHHHHCSHHHHHH---C-----------------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred ChHh-cCcHHHHHHHHHHHHHHHHhCHHHHHhC---C-----------------CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 4555 99999999999998864432 222211 1 12358899999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+++.+|+.++++++. .+|+|+. +..++.+|..+... .++||||||||.+..+|.....+.......+++.||..
T Consensus 238 e~~~~f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ 311 (434)
T 4b4t_M 238 QTNATFLKLAAPQLV-QMYIGEG-AKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ 311 (434)
T ss_dssp HHTCEEEEEEGGGGC-SSCSSHH-HHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH
T ss_pred HhCCCEEEEehhhhh-hcccchH-HHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH
Confidence 999999999999999 4699988 89999999887655 79999999999999987655444443444577889999
Q ss_pred HhCceeeeecceeeecCCeEEEecCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
|++..-. .+.++|+|||.
T Consensus 312 ldg~~~~---------~~ViVIaaTNr 329 (434)
T 4b4t_M 312 LDGFSSD---------DRVKVLAATNR 329 (434)
T ss_dssp HTTSCSS---------CSSEEEEECSS
T ss_pred hhccCCC---------CCEEEEEeCCC
Confidence 9965421 24688888884
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-19 Score=188.31 Aligned_cols=149 Identities=25% Similarity=0.376 Sum_probs=117.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.+++ |.|++++|+.|.+.+....+ .++... + ...+++||||||||||||+||++||+
T Consensus 170 ~~~d-igGl~~~k~~l~e~v~~pl~~p~~~~~~---g-----------------~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 170 TYAD-VGGLDMQKQEIREAVELPLVQADLYEQI---G-----------------IDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CGGG-SCSCHHHHHHHHHHHHHHHHCHHHHHHH---C-----------------CCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CHHH-hccHHHHHHHHHHHHHHHHhCHHHHHhC---C-----------------CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455 99999999999999864322 222221 1 12358899999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+++.+|+.++++++.. +|+|+. +..++.+|..+... .++||||||+|.+...|.......+....++++.||..
T Consensus 229 ~~~~~~~~v~~~~l~~-~~~Ge~-e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ 302 (428)
T 4b4t_K 229 STKAAFIRVNGSEFVH-KYLGEG-PRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ 302 (428)
T ss_dssp HHTCEEEEEEGGGTCC-SSCSHH-HHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHH
T ss_pred HhCCCeEEEecchhhc-cccchh-HHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHH
Confidence 9999999999999984 699988 89999999887654 78999999999999988665555555556789999999
Q ss_pred HhCceeeeecceeeecCCeEEEecCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
|||.... .+.++|+|||.
T Consensus 303 ldg~~~~---------~~v~vI~aTN~ 320 (428)
T 4b4t_K 303 MDGFDQS---------TNVKVIMATNR 320 (428)
T ss_dssp HHHSCSS---------CSEEEEEEESC
T ss_pred hhCCCCC---------CCEEEEEecCC
Confidence 9975321 25788888884
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4e-19 Score=187.00 Aligned_cols=148 Identities=21% Similarity=0.280 Sum_probs=116.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHH--HHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHY--KRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~--kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
|++ |.|++++|+.|.+.|.... ..++.... ...+++||||||||||||+||++||++
T Consensus 208 ~~D-IgGl~~~k~~L~e~V~~pl~~pe~f~~~G--------------------i~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 208 YSD-VGGCKDQIEKLREVVELPLLSPERFATLG--------------------IDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSS-CTTCHHHHHHHHHHTHHHHHCHHHHHHHT--------------------CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHH-hccHHHHHHHHHHHHHHHhcCHHHHHHCC--------------------CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 444 9999999999999886432 22222211 123688999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
++.+|+.++++++.. +|+|+. +..++.+|..+... .++||||||||.+...|.....+.......+++.||..|
T Consensus 267 ~~~~fi~vs~s~L~s-k~vGes-ek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 340 (467)
T 4b4t_H 267 TDATFIRVIGSELVQ-KYVGEG-ARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQL 340 (467)
T ss_dssp HTCEEEEEEGGGGCC-CSSSHH-HHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHH
T ss_pred cCCCeEEEEhHHhhc-ccCCHH-HHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHh
Confidence 999999999999994 699988 89999999887654 799999999999999887655555555556788889999
Q ss_pred hCceeeeecceeeecCCeEEEecCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
++... ..+.++|+|||.
T Consensus 341 Dg~~~---------~~~ViVIaATNr 357 (467)
T 4b4t_H 341 DGFDP---------RGNIKVMFATNR 357 (467)
T ss_dssp HSSCC---------TTTEEEEEECSC
T ss_pred hccCC---------CCcEEEEeCCCC
Confidence 86432 125788899884
No 9
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=2.6e-18 Score=180.36 Aligned_cols=104 Identities=40% Similarity=0.699 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHH
Q 012525 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (461)
Q Consensus 262 ~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtL 341 (461)
++|+++...|+++|+||+++|+.|..++.++|++.... .. ......+.+|||+||||||||++
T Consensus 4 ~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~---~~--------------~~~~~~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ---EP--------------LRHEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSC---TT--------------TTTTCCCCCEEEECCTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccc---cc--------------cccccCCceEEEEcCCCCCHHHH
Confidence 68999999999999999999999999998888764311 00 01123357899999999999999
Q ss_pred HHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhh
Q 012525 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (461)
Q Consensus 342 AraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a 382 (461)
|++||+.++.+|+.++++.+...+|+|.+.+..++.+|..+
T Consensus 67 ar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a 107 (444)
T 1g41_A 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107 (444)
T ss_dssp HHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHH
Confidence 99999999999999999998877899976677777666543
No 10
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=1.2e-17 Score=162.15 Aligned_cols=173 Identities=40% Similarity=0.653 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHH
Q 012525 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (461)
Q Consensus 262 ~t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtL 341 (461)
.++.++...|++.|+||+.+++.|..++..++.+... .... .....+.++||+||||||||++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~---------~~~~--------~~~~~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQL---------QEPL--------RHEVTPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSS---------CHHH--------HHHCCCCCEEEECCTTSSHHHH
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhh---------cccc--------cccCCCceEEEECCCCCCHHHH
Confidence 5789999999999999999999999888654322100 0000 0012357899999999999999
Q ss_pred HHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhcc-CceEEEEcCccccchhhhccccccccchHHH
Q 012525 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAA-QQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 342 AraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a-~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
|+++|+.++.+++.+++..+...+|++...+..+..++..+.+.+..+ .++||||||||++...... ...+.+...+
T Consensus 67 a~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~ 144 (310)
T 1ofh_A 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGV 144 (310)
T ss_dssp HHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHH
T ss_pred HHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHH
Confidence 999999999999999999988667888776677788777654433332 4789999999999877431 1233344457
Q ss_pred HHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 421 QQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 421 ~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
++.|+++||+..+..... .......++|+++|.
T Consensus 145 ~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~~ 177 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKHG-MVKTDHILFIASGAF 177 (310)
T ss_dssp HHHHHHHHHCCEEEETTE-EEECTTCEEEEEECC
T ss_pred HHHHHHHhcCCeEecccc-cccCCcEEEEEcCCc
Confidence 999999999876554332 122236788888654
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.71 E-value=1.7e-17 Score=185.11 Aligned_cols=148 Identities=24% Similarity=0.323 Sum_probs=106.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|.|++++|+.|.+++....+. .. .........+++|||+||||||||++|++||.+++.+|+
T Consensus 479 iggl~~~k~~l~e~v~~p~~~---p~---------------~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEH---PD---------------KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTC---SG---------------GGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred hCCHHHHHHHHHHHHHhhhhC---HH---------------HHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 789999999999888421110 00 000111234688999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETK 434 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~ 434 (461)
.++.+++. .+|+|+. ++.++.+|..+... .++||||||||.+...|+......+...++++++||..||+....
T Consensus 541 ~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~~----~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 541 SIKGPELL-TMWFGES-EANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ECCHHHHH-TTTCSSC-HHHHHHHHHHHHTT----CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred Eeccchhh-ccccchH-HHHHHHHHHHHHHc----CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 99999999 4699999 89999999988654 799999999999999886443333334456999999999976421
Q ss_pred eecceeeecCCeEEEecCCCC
Q 012525 435 TFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 435 i~~~~r~~~rd~IiI~TsNid 455 (461)
.+.++|+|||.-
T Consensus 615 ---------~~V~vi~aTN~p 626 (806)
T 3cf2_A 615 ---------KNVFIIGATNRP 626 (806)
T ss_dssp ---------SSEEEECC-CCS
T ss_pred ---------CCEEEEEeCCCc
Confidence 257888898853
No 12
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.68 E-value=2e-16 Score=157.63 Aligned_cols=147 Identities=29% Similarity=0.434 Sum_probs=107.3
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|++ |+|++.+|+.|..++...... ... .......+.+|||+||||||||+||++||++++
T Consensus 17 ~~d-i~G~~~~~~~l~~~i~~~~~~---~~~----------------~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 17 WED-VAGLEGAKEALKEAVILPVKF---PHL----------------FKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHC---GGG----------------CCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred HHH-hcChHHHHHHHHHHHHHHHhC---HHH----------------HhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 555 899999999999988533211 100 011123357899999999999999999999999
Q ss_pred CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 351 ~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+|+.+++.++.. .|+|+. +..++.+|..+... +++||||||||.|..++... .....+.+++.|+..|++
T Consensus 77 ~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~ 147 (322)
T 3eie_A 77 STFFSVSSSDLVS-KWMGES-EKLVKQLFAMAREN----KPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNG 147 (322)
T ss_dssp CEEEEEEHHHHHT-TTGGGH-HHHHHHHHHHHHHT----SSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGG
T ss_pred CCEEEEchHHHhh-cccchH-HHHHHHHHHHHHhc----CCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcc
Confidence 9999999999874 577766 78888888776543 78999999999999876432 223445689999999985
Q ss_pred ceeeeecceeeecCCeEEEecCCC
Q 012525 431 TETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 431 ~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
.... ..+.++|+|+|.
T Consensus 148 ~~~~--------~~~v~vi~atn~ 163 (322)
T 3eie_A 148 VGND--------SQGVLVLGATNI 163 (322)
T ss_dssp GGTS--------CCCEEEEEEESC
T ss_pred cccc--------CCceEEEEecCC
Confidence 4311 125788888885
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=155.83 Aligned_cols=148 Identities=24% Similarity=0.392 Sum_probs=109.8
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l- 349 (461)
|++ |+|++.+|+.|.+++....+. .... ......+++|||+||||||||+||+++|+++
T Consensus 11 ~~d-i~G~~~~k~~l~~~v~~p~~~---~~~~----------------~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 11 WSD-VAGLEGAKEALKEAVILPIKF---PHLF----------------TGKRTPWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp GGG-SCSCHHHHHHHHHHHHHHHHC---GGGS----------------CTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHH-hcCHHHHHHHHHHHHHHHHhC---HHHH----------------hCCCCCCceEEEECCCCccHHHHHHHHHHHcC
Confidence 455 899999999999988543221 1000 0111234789999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+|+.+++.++.. .|+|+. +..++.+|..+.. .+++||||||||.+...+... .......+++.|+..|+
T Consensus 71 ~~~~~~i~~~~l~~-~~~g~~-~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld 141 (322)
T 1xwi_A 71 NSTFFSISSSDLVS-KWLGES-EKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQ 141 (322)
T ss_dssp SCEEEEEECCSSCC-SSCCSC-HHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEhHHHHh-hhhhHH-HHHHHHHHHHHHh----cCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHh
Confidence 88999999998884 588887 7888888876653 378999999999998876432 22234568899999999
Q ss_pred CceeeeecceeeecCCeEEEecCCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+.... ..+.++|+|+|..
T Consensus 142 ~~~~~--------~~~v~vI~atn~~ 159 (322)
T 1xwi_A 142 GVGVD--------NDGILVLGATNIP 159 (322)
T ss_dssp CSSSC--------CTTEEEEEEESCT
T ss_pred ccccc--------CCCEEEEEecCCc
Confidence 65321 1357888888864
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.66 E-value=1.9e-16 Score=176.67 Aligned_cols=147 Identities=26% Similarity=0.390 Sum_probs=113.2
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+++ |.|++++|+.|++.+..+.+ +...... .....+++|||+||||||||+||++||++++
T Consensus 203 ~~d-IgGl~~~~~~l~e~v~~pl~---~p~~f~~---------------~g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 203 YDD-IGGCRKQLAQIKEMVELPLR---HPALFKA---------------IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGG-CCSCCTTHHHHHHHHHHHHH---CCGGGTS---------------CCCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred hhh-hcCHHHHHHHHHHHHHHHcc---CHHHHhh---------------cCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 99999999999998853322 1111111 1123468999999999999999999999999
Q ss_pred CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 351 ~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+|+.+++.++.. +|+|+. +..++.+|..+... .++||||||||.|..+|+... ....+++.++||..|++
T Consensus 264 ~~~~~v~~~~l~s-k~~ges-e~~lr~lF~~A~~~----~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 264 AFFFLINGPEIMS-KLAGES-ESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDG 334 (806)
T ss_dssp CEEEEEEHHHHHS-SCTTHH-HHHHHHHHHHHTTS----CSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHH
T ss_pred CeEEEEEhHHhhc-ccchHH-HHHHHHHHHHHHHc----CCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhc
Confidence 9999999999984 688887 88999999987654 799999999999999876432 23345689999999996
Q ss_pred ceeeeecceeeecCCeEEEecCCC
Q 012525 431 TETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 431 ~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
...+ ...++|+|||.
T Consensus 335 ~~~~---------~~V~VIaaTN~ 349 (806)
T 3cf2_A 335 LKQR---------AHVIVMAATNR 349 (806)
T ss_dssp CCGG---------GCEEEEEECSS
T ss_pred cccc---------CCEEEEEecCC
Confidence 5321 24678888874
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.65 E-value=5e-16 Score=153.51 Aligned_cols=149 Identities=23% Similarity=0.348 Sum_probs=107.5
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
|++ |+|++.+|+.|.+.+..... .++... + ...+.+|||+||||||||+||++||+.
T Consensus 14 ~~d-i~G~~~~~~~l~~~v~~~~~~~~~~~~~---~-----------------~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 14 WED-IGGLEDVKRELQELVQYPVEHPDKFLKF---G-----------------MTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGG-SCSCHHHHHHHHHHHHHHHHCHHHHHHH---C-----------------CCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHH-hCCHHHHHHHHHHHHHHHhhCHHHHHHc---C-----------------CCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 444 89999999999998863321 111110 0 122478999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
++.+|+.+++.++.. .|+|+. +..++.+|..+... .++||||||||.+...+.............+++.||..|
T Consensus 73 ~~~~~i~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 73 CQANFISIKGPELLT-MWFGES-EANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 146 (301)
T ss_dssp TTCEEEEECHHHHHH-HHHTTC-TTHHHHHHHHHHHT----CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHH
T ss_pred hCCCEEEEEhHHHHh-hhcCch-HHHHHHHHHHHHhc----CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHh
Confidence 999999999998874 366766 56677778766433 688999999999998865432222223345889999999
Q ss_pred hCceeeeecceeeecCCeEEEecCCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
++... ..+.++|+|+|..
T Consensus 147 ~~~~~---------~~~v~vi~atn~~ 164 (301)
T 3cf0_A 147 DGMST---------KKNVFIIGATNRP 164 (301)
T ss_dssp HSSCT---------TSSEEEEEEESCG
T ss_pred hcccC---------CCCEEEEEecCCc
Confidence 95421 1257888888854
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.64 E-value=9.9e-16 Score=155.33 Aligned_cols=149 Identities=28% Similarity=0.415 Sum_probs=103.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+|++.+|+.|..++..+... ... .........+|||+||||||||+||++||+++
T Consensus 49 ~~~d-i~G~~~~~~~l~~~v~~~~~~---~~~----------------~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 49 KWED-VAGLEGAKEALKEAVILPVKF---PHL----------------FKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CGGG-SCCGGGHHHHHHHHTHHHHHC---GGG----------------GCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHHhC---HHH----------------HhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4555 899999999999988533211 100 00112335789999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+|+.+++.++.. .|+|+. +..++.+|..+.. ..++||||||||.|...+... .......+++.||..|+
T Consensus 109 ~~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 109 NSTFFSVSSSDLVS-KWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMN 179 (355)
T ss_dssp TCEEEEEEHHHHHS-CC---C-HHHHHHHHHHHHH----TSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHH
T ss_pred CCCEEEeeHHHHhh-hhcchH-HHHHHHHHHHHHH----cCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhh
Confidence 99999999999884 577776 7778888876543 378999999999999876432 22234558899999998
Q ss_pred CceeeeecceeeecCCeEEEecCCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+.... ..+.++|+|+|..
T Consensus 180 ~~~~~--------~~~v~vI~atn~~ 197 (355)
T 2qp9_X 180 GVGND--------SQGVLVLGATNIP 197 (355)
T ss_dssp HCC-----------CCEEEEEEESCG
T ss_pred ccccc--------CCCeEEEeecCCc
Confidence 54311 1257888888854
No 17
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.62 E-value=8.4e-16 Score=151.83 Aligned_cols=128 Identities=15% Similarity=0.207 Sum_probs=84.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
+.++||+||||||||+||++||+.++.+|+.++++++.. .|+|+. +..++.+|..+........++||||||||++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC-C---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh-ccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 578999999999999999999999999999999999884 577766 677888887775444456789999999999988
Q ss_pred hhhccccccccchHHHHHHHHHHHhCceeeeecc-eee-ecCCeEEEecCCCC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEGTETKTFAA-VSK-VSRDNLYIKTSGLD 455 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r~-~~rd~IiI~TsNid 455 (461)
.+.... ........+++.|+++||+........ ... ...+.++|+|||..
T Consensus 114 ~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~ 165 (293)
T 3t15_A 114 RMGGTT-QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF 165 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC
T ss_pred CCCCCc-cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc
Confidence 543211 122234458899999999665433222 111 12268899999954
No 18
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=153.56 Aligned_cols=148 Identities=28% Similarity=0.414 Sum_probs=98.8
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|++ |+|++.+++.|...+...... . +....+.....+|||+||||||||+||++||+.++
T Consensus 114 ~~~-iiG~~~~~~~l~~~~~~~~~~---~----------------~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 114 FDD-IAGQDLAKQALQEIVILPSLR---P----------------ELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHC---T----------------TTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred hHH-hCCHHHHHHHHHHHHHHhccC---H----------------HHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 444 899999999999988532210 0 01112223458899999999999999999999999
Q ss_pred CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 351 ~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+|+.+++.++.. .|.|.. +..+..+|..+... .++||||||||.|...+.. ........+++.|+..|++
T Consensus 174 ~~~~~v~~~~l~~-~~~g~~-~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~ 244 (389)
T 3vfd_A 174 ATFFNISAASLTS-KYVGEG-EKLVRALFAVAREL----QPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDG 244 (389)
T ss_dssp CEEEEECSCCC--------C-HHHHHHHHHHHHHS----SSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHH
T ss_pred CcEEEeeHHHhhc-cccchH-HHHHHHHHHHHHhc----CCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhc
Confidence 9999999998884 477776 66777787765533 6789999999999876542 1223345688999999985
Q ss_pred ceeeeecceeeecCCeEEEecCCC
Q 012525 431 TETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 431 ~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
.... ...++++|+|+|.
T Consensus 245 ~~~~-------~~~~v~vI~atn~ 261 (389)
T 3vfd_A 245 VQSA-------GDDRVLVMGATNR 261 (389)
T ss_dssp HC------------CEEEEEEESC
T ss_pred cccc-------CCCCEEEEEecCC
Confidence 4321 1235788888886
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.60 E-value=5.8e-15 Score=142.77 Aligned_cols=149 Identities=26% Similarity=0.389 Sum_probs=99.8
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~k--ri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+++ |+|++.+++.|...+..... .++... + ...+.++||+||||||||++|++||+.
T Consensus 16 ~~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YED-IGGLEKQMQEIREVVELPLKHPELFEKV---G-----------------IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHCHHHHHHH---C-----------------CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHH-hcCHHHHHHHHHHHHHHHhhCHHHHHhc---C-----------------CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 444 89999999999988853321 111110 0 122478999999999999999999999
Q ss_pred cCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 349 l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
++.+|+.+++.++.. .+.+.. +..+..+|..+.. ..++||||||||.+..++..............+..|+..|
T Consensus 75 ~~~~~~~v~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 75 TNATFIRVVGSELVK-KFIGEG-ASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp TTCEEEEEEGGGGCC-CSTTHH-HHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred hCCCEEEEehHHHHH-hccchH-HHHHHHHHHHHHH----cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 999999999998874 466655 5667777765543 3678999999999987754332222222222344444444
Q ss_pred hCceeeeecceeeecCCeEEEecCCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
++... ..+.++|+|+|..
T Consensus 149 ~~~~~---------~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 149 DGFDA---------RGDVKIIGATNRP 166 (285)
T ss_dssp HTTCS---------SSSEEEEEECSCG
T ss_pred hCCCC---------CCCEEEEEeCCCc
Confidence 43211 1257888888854
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=150.01 Aligned_cols=146 Identities=27% Similarity=0.414 Sum_probs=102.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|+|++.+++.|.+.+...... . +..........+|||+||||||||+||++||+.++.+|+
T Consensus 86 i~G~~~~~~~l~~~i~~~~~~---~----------------~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 86 IAGVEFAKATIKEIVVWPMLR---P----------------DIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp SCSCHHHHHHHHHHTHHHHHC---T----------------TTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred hCChHHHHHHHHHHHHHHhhC---h----------------HhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 899999999999988532210 0 001112234678999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETK 434 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~ 434 (461)
.+++.++.. .+.|+. +..++.+|..+.. ..++||||||||.|...+.. ........+++.||..|++....
T Consensus 147 ~i~~~~l~~-~~~g~~-~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 147 SISASSLTS-KWVGEG-EKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp EEEGGGGCC-SSTTHH-HHHHHHHHHHHHH----TCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----
T ss_pred EEehHHhhc-cccchH-HHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhccccc
Confidence 999998874 466655 6677777765543 36889999999999876532 12333456889999999965321
Q ss_pred eecceeeecCCeEEEecCCCC
Q 012525 435 TFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 435 i~~~~r~~~rd~IiI~TsNid 455 (461)
...++++|+|+|..
T Consensus 218 -------~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 218 -------SEDRILVVGATNRP 231 (357)
T ss_dssp -------CCCCEEEEEEESCG
T ss_pred -------CCCCEEEEEecCCh
Confidence 12357888888863
No 21
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=3.7e-15 Score=164.33 Aligned_cols=164 Identities=22% Similarity=0.310 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCCC----HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCC
Q 012525 251 RWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKS 326 (461)
Q Consensus 251 ~w~g~~l~~~l~t----~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 326 (461)
.|++.+....... ..++.+.|.+.|+||+.+++.|..++.... .+.. .......
T Consensus 432 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~---------~g~~-------------~~~~p~~ 489 (758)
T 1r6b_X 432 RIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMAR---------AGLG-------------HEHKPVG 489 (758)
T ss_dssp HHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHH---------TTCS-------------CTTSCSE
T ss_pred HhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHh---------cccC-------------CCCCCce
Confidence 4445444443333 335677788889999999999988774211 0100 0001224
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhc-----------CcccccHHHHHHHHHHhhchhhhccCceEEE
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMVY 395 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~-----------g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLf 395 (461)
++||+||||||||++|++||+.++.+|+.++++++.+. +|+|......+...+ ..+.++|||
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~-------~~~~~~vl~ 562 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV-------IKHPHAVLL 562 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHH-------HHCSSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHH-------HhCCCcEEE
Confidence 79999999999999999999999999999999987642 244432222233333 234678999
Q ss_pred EcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 396 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 396 IDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
||||+++.+. +++.|+++||.+.+..........+++++|+|+|.+.+
T Consensus 563 lDEi~~~~~~--------------~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~ 610 (758)
T 1r6b_X 563 LDEIEKAHPD--------------VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_dssp EETGGGSCHH--------------HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC
T ss_pred EeCccccCHH--------------HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchh
Confidence 9999999887 99999999998777654432222348999999998653
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.59 E-value=8.7e-15 Score=142.54 Aligned_cols=149 Identities=26% Similarity=0.406 Sum_probs=102.4
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+++ |+|++.+++.|...+...... .. ....+.....++||+||||||||++|+++|+.++
T Consensus 20 ~~~-i~G~~~~~~~l~~~i~~~~~~---~~----------------~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 20 WTD-IAGQDVAKQALQEMVILPSVR---PE----------------LFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GGG-SCCCHHHHHHHHHHTHHHHHC---GG----------------GSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHH-hCChHHHHHHHHHHHHhhhhC---HH----------------HHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 444 899999999999888532210 00 0111223457899999999999999999999999
Q ss_pred CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 351 ~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+|+.+++.++.. .+.+.. +..++.+|..+.. ..++||||||||.+...+.... ......+++.|+..|++
T Consensus 80 ~~~~~i~~~~l~~-~~~~~~-~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 80 ATFLNISAASLTS-KYVGDG-EKLVRALFAVARH----MQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDG 150 (297)
T ss_dssp CEEEEEESTTTSS-SSCSCH-HHHHHHHHHHHHH----TCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHH
T ss_pred CCeEEeeHHHHhh-cccchH-HHHHHHHHHHHHH----cCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhc
Confidence 9999999998874 466654 6677777765543 3789999999999988754321 22334578899999985
Q ss_pred ceeeeecceeeecCCeEEEecCCC
Q 012525 431 TETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 431 ~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
..... .....++|+|+|.
T Consensus 151 ~~~~~------~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 151 LPGNP------DGDRIVVLAATNR 168 (297)
T ss_dssp CC------------CEEEEEEESC
T ss_pred ccccC------CCCcEEEEeecCC
Confidence 43221 0124677787775
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.58 E-value=4.3e-15 Score=155.16 Aligned_cols=149 Identities=23% Similarity=0.369 Sum_probs=100.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+|++.+|+.|..++..+... .. ........+++|||+||||||||+||++||+++
T Consensus 132 ~~~d-i~G~~~~k~~l~~~v~~p~~~---~~----------------~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSD-VAGLEGAKEALKEAVILPIKF---PH----------------LFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CGGG-SCSCHHHHHHHHHHHTHHHHC---TT----------------TTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHH-hcCHHHHHHHHHHHHHHHhhC---HH----------------HhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3455 899999999999988532210 00 000111235789999999999999999999999
Q ss_pred -CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHH
Q 012525 350 -NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (461)
Q Consensus 350 -~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~L 428 (461)
+.+|+.+++.++.. .|+|+. +..++.+|..+.. ..++||||||||.+...+... .......+++.||..|
T Consensus 192 ~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l 262 (444)
T 2zan_A 192 NNSTFFSISSSDLVS-KWLGES-EKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQM 262 (444)
T ss_dssp CSSEEEEECCC----------C-CCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTT
T ss_pred CCCCEEEEeHHHHHh-hhcchH-HHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHH
Confidence 88999999998874 477765 5667777765543 378999999999998875432 2223456889999999
Q ss_pred hCceeeeecceeeecCCeEEEecCCCC
Q 012525 429 EGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 429 Eg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
++.... ..+.++|+|+|..
T Consensus 263 ~~~~~~--------~~~v~vI~atn~~ 281 (444)
T 2zan_A 263 QGVGVD--------NDGILVLGATNIP 281 (444)
T ss_dssp TCSSCC--------CSSCEEEEEESCG
T ss_pred hCcccC--------CCCEEEEecCCCc
Confidence 864311 1257888888854
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.58 E-value=1.4e-14 Score=138.68 Aligned_cols=151 Identities=24% Similarity=0.335 Sum_probs=103.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+|++.+|+.|...+.. +.+..... ......+.++||+||||||||++|++||+.+
T Consensus 10 ~~~~-i~G~~~~~~~l~~~~~~----~~~~~~~~---------------~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 10 TFAD-VAGCDEAKEEVAELVEY----LREPSRFQ---------------KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CGGG-SCSCHHHHHHTHHHHHH----HHCGGGC--------------------CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHH-hcCcHHHHHHHHHHHHH----HhCHHHHH---------------HcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3455 89999999999887631 11110000 0001224679999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+|+.+++.++.. .+.+.. +..+..+|..+.. ..++||||||||.+...+.............+++.|+..|+
T Consensus 70 ~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 70 KVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp TCCEEEECSCSSTT-SCCCCC-HHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeHHHHHH-Hhhhhh-HHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 99999999998874 466766 5667777776543 25789999999999876543221222223357888898888
Q ss_pred CceeeeecceeeecCCeEEEecCCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+... ..+.++|+|+|..
T Consensus 144 ~~~~---------~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 144 GFEG---------NEGIIVIAATNRP 160 (257)
T ss_dssp TCCS---------SSCEEEEEEESCT
T ss_pred Cccc---------CCCEEEEEeeCCc
Confidence 5421 1257888888754
No 25
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.58 E-value=5.9e-15 Score=156.16 Aligned_cols=151 Identities=26% Similarity=0.349 Sum_probs=104.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+|++++|+.|.+.+.. ++. .......+ ...+.+|||+||||||||+||++||.++
T Consensus 14 ~f~d-i~G~~~~~~~l~e~v~~-l~~-~~~~~~~g-----------------~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 14 TFKD-VGGAEEAIEELKEVVEF-LKD-PSKFNRIG-----------------ARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CGGG-CCSCHHHHHHHHHHHHH-HHC-THHHHTTT-----------------CCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHH-hCCcHHHHHHHHHHHHH-hhC-hHHHhhcC-----------------CCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3455 89999999999988742 110 00000000 1224679999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+|+.++++++.. .++|.. +..++.+|..+... .++||||||||.+..+|.....+.+.....+++.||..|+
T Consensus 74 ~~~f~~is~~~~~~-~~~g~~-~~~~r~lf~~A~~~----~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 74 NVPFFHISGSDFVE-LFVGVG-AARVRDLFAQAKAH----APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp TCCEEEEEGGGTTT-CCTTHH-HHHHHHHHHHHHHT----CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHH
T ss_pred CCCeeeCCHHHHHH-HHhccc-HHHHHHHHHHHHhc----CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHh
Confidence 99999999998885 477765 56777888776543 6899999999999987654333334445568899999998
Q ss_pred CceeeeecceeeecCCeEEEecCCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+... ..+.++|+|+|..
T Consensus 148 ~~~~---------~~~viVIaaTn~~ 164 (476)
T 2ce7_A 148 GFDS---------KEGIIVMAATNRP 164 (476)
T ss_dssp HSCG---------GGTEEEEEEESCG
T ss_pred ccCC---------CCCEEEEEecCCh
Confidence 5321 1257888888864
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.57 E-value=1.8e-14 Score=140.55 Aligned_cols=151 Identities=23% Similarity=0.281 Sum_probs=103.8
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHH
Q 012525 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 263 t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLA 342 (461)
...++...|++.|+|++.+|+.|...+..... .......+. .......++||+||||||||++|
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~--~~~~~~~g~--------------~~~~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLV--ERARQKLGL--------------AHETPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHH--HHHHHHHTC--------------CSSCCCCEEEEEECTTSSHHHHH
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHh--HHHHHHcCC--------------CCCCCCceEEEECCCCCCHHHHH
Confidence 45678889997799999999999988753321 111111110 00122468999999999999999
Q ss_pred HHHHHhcC-------CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccccccc
Q 012525 343 KTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (461)
Q Consensus 343 raLA~~l~-------~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~ 415 (461)
+++|+.+. .+++.+++.++.. .++|.. ...+..+|..+ .++||||||||.|...+.. ..
T Consensus 85 ~~la~~l~~~~~~~~~~~~~~~~~~l~~-~~~g~~-~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~-----~~ 150 (309)
T 3syl_A 85 LKMAGLLHRLGYVRKGHLVSVTRDDLVG-QYIGHT-APKTKEVLKRA-------MGGVLFIDEAYYLYRPDNE-----RD 150 (309)
T ss_dssp HHHHHHHHHTTSSSSCCEEEECGGGTCC-SSTTCH-HHHHHHHHHHH-------TTSEEEEETGGGSCCCC--------C
T ss_pred HHHHHHHHhcCCcCCCcEEEEcHHHhhh-hccccc-HHHHHHHHHhc-------CCCEEEEEChhhhccCCCc-----cc
Confidence 99999883 3899999998874 466665 45556666544 4679999999999755321 12
Q ss_pred chHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 416 SGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 416 s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
....+++.|++.|+... .+.++|+|+|.
T Consensus 151 ~~~~~~~~Ll~~l~~~~-----------~~~~~i~~~~~ 178 (309)
T 3syl_A 151 YGQEAIEILLQVMENNR-----------DDLVVILAGYA 178 (309)
T ss_dssp CTHHHHHHHHHHHHHCT-----------TTCEEEEEECH
T ss_pred ccHHHHHHHHHHHhcCC-----------CCEEEEEeCCh
Confidence 23458999999999432 24566666653
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=138.32 Aligned_cols=147 Identities=25% Similarity=0.319 Sum_probs=89.9
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|+|++.+|+.|...+.. +..... +.......+.++||+||||||||++|+++|+.++.+|+
T Consensus 8 i~G~~~~~~~l~~~~~~----~~~~~~---------------~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDY----LKSPER---------------FLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp SCSCHHHHHHHHHHHHH----HHCCC---------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred hCCHHHHHHHHHHHHHH----HHCHHH---------------HHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 89999999999887742 110000 00001123578999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc-cccchHHHHHHHHHHHhCcee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGTET 433 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~-~~~s~~~v~~aLL~~LEg~~v 433 (461)
.+++.++.. .+.+.. +..+..+|..+.. ..++||||||||.+..++...... ........++.|+..|++...
T Consensus 69 ~~~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 69 AMAGAEFVE-VIGGLG-AARVRSLFKEARA----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp EEETTTTSS-SSTTHH-HHHHHHHHHHHHH----TCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred EechHHHHh-hccChh-HHHHHHHHHHHHh----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 999998874 355544 5667777766543 257899999999998765432111 011122356677777774321
Q ss_pred eeecceeeecCCeEEEecCCCC
Q 012525 434 KTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 434 ~i~~~~r~~~rd~IiI~TsNid 455 (461)
....++|+|+|..
T Consensus 143 ---------~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 143 ---------TDHVIVLASTNRA 155 (262)
T ss_dssp ---------TCCEEEEEEESCG
T ss_pred ---------CCCEEEEecCCCh
Confidence 1257888888754
No 28
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.56 E-value=8.6e-15 Score=142.81 Aligned_cols=148 Identities=27% Similarity=0.346 Sum_probs=101.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHH
Q 012525 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (461)
Q Consensus 265 ~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAra 344 (461)
.++.+.|.+.++||+.+++.|...+......+. . ......++||+||||||||++|++
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~-----~-----------------~~~~~~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARAGLK-----D-----------------PNRPIGSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCS-----C-----------------TTSCSEEEEEESCSSSSHHHHHHH
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC-----C-----------------CCCCceEEEEECCCCcCHHHHHHH
Confidence 457888888899999999999998853221100 0 001225799999999999999999
Q ss_pred HHHhc---CCceEEecchhhhhcC-----------cccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccc
Q 012525 345 LARHV---NVPFVIADATTLTQAG-----------YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (461)
Q Consensus 345 LA~~l---~~pfv~i~~s~l~~~g-----------~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~ 410 (461)
||+.+ +.+|+.+++..+.... +.+......+... +..+.++||||||||++...
T Consensus 67 la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-------~~~~~~~vl~lDEi~~l~~~----- 134 (311)
T 4fcw_A 67 LAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA-------VRRRPYSVILFDAIEKAHPD----- 134 (311)
T ss_dssp HHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHH-------HHHCSSEEEEEETGGGSCHH-----
T ss_pred HHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHH-------HHhCCCeEEEEeChhhcCHH-----
Confidence 99988 4579999988765321 1111100112222 22345689999999999887
Q ss_pred cccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 411 ISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 411 ~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+++.|+++|+...+..........++.++|+|+|.+
T Consensus 135 ---------~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~ 170 (311)
T 4fcw_A 135 ---------VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLG 170 (311)
T ss_dssp ---------HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTT
T ss_pred ---------HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccC
Confidence 899999999977765332222223378899999983
No 29
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.55 E-value=8.8e-15 Score=155.17 Aligned_cols=143 Identities=25% Similarity=0.389 Sum_probs=107.3
Q ss_pred cCChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 275 VIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~--~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
|+|++.+++.|.+.+... +..++... + ...+.+|||+||||||||++|++||+.++.+
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~---g-----------------~~~~~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAI---G-----------------VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHH---T-----------------CCCCCEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhc---C-----------------CCCCCcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 899999999999988532 11222111 0 1235789999999999999999999999999
Q ss_pred eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCce
Q 012525 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTE 432 (461)
Q Consensus 353 fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~ 432 (461)
|+.+++.++.. .+.|+. +..++.+|..+... .++||||||||.|..+++.. .......+++.||..|++..
T Consensus 266 fv~vn~~~l~~-~~~g~~-~~~~~~~f~~A~~~----~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 266 FFLINGPEIMS-KLAGES-ESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp EEEEEHHHHHT-SCTTHH-HHHHHHHHHHHHHT----CSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSC
T ss_pred EEEEEchHhhh-hhcchh-HHHHHHHHHHHHhc----CCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccc
Confidence 99999999884 577766 67778888776543 67899999999999875432 12233468999999999432
Q ss_pred eeeecceeeecCCeEEEecCCCC
Q 012525 433 TKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 433 v~i~~~~r~~~rd~IiI~TsNid 455 (461)
. ..+.++|+|+|..
T Consensus 337 ~---------~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 337 Q---------RAHVIVMAATNRP 350 (489)
T ss_dssp T---------TSCEEEEEEESCG
T ss_pred c---------CCceEEEEecCCc
Confidence 1 2268899999865
No 30
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=1.4e-14 Score=159.97 Aligned_cols=162 Identities=23% Similarity=0.301 Sum_probs=105.3
Q ss_pred CCCCCCCCCCCCC----CHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccC
Q 012525 250 SRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEK 325 (461)
Q Consensus 250 ~~w~g~~l~~~l~----t~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~ 325 (461)
..|++.+...... ....+...|.+.|+||+.+++.|..++..... +. .......
T Consensus 464 ~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~---------~~-------------~~~~~p~ 521 (758)
T 3pxi_A 464 SSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARA---------GL-------------KDPKRPI 521 (758)
T ss_dssp HTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTT---------TC-------------SCTTSCS
T ss_pred HHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHc---------cc-------------CCCCCCc
Confidence 4555554443221 12246778888899999999999888842110 00 0000112
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
.++||+||||||||++|++||+.+ +.+|+.++++++... +... ...+...+ ....++|||||||+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~-------~~~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKV-------RRKPYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHH-------HHCSSSEEEEECGGGS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHH-------HhCCCeEEEEeCcccc
Confidence 379999999999999999999987 679999999988854 2222 12222222 2235679999999999
Q ss_pred chhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 403 TKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 403 ~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
... +++.|+++||++.+...........++++|+|||.+..
T Consensus 592 ~~~--------------~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~ 632 (758)
T 3pxi_A 592 HPD--------------VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGAS 632 (758)
T ss_dssp CHH--------------HHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTT
T ss_pred CHH--------------HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChh
Confidence 887 99999999998776654443333448999999997553
No 31
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.50 E-value=8.2e-15 Score=129.70 Aligned_cols=113 Identities=20% Similarity=0.226 Sum_probs=82.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---CC
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~ 351 (461)
++|++.+.+.+...+.. ++....+|||+||||||||++|++|++.. +.
T Consensus 3 iiG~s~~~~~~~~~~~~-----------------------------~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQ-----------------------------LSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp -CCSSHHHHHHHHHHHH-----------------------------HTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred ceeCCHHHHHHHHHHHH-----------------------------HhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 67888877777766631 11234789999999999999999999987 67
Q ss_pred ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCc
Q 012525 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 352 pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~ 431 (461)
+|+ +++..+... .....++. .+++++|||||||.+... .|..|+.+|+..
T Consensus 54 ~~v-~~~~~~~~~--------~~~~~~~~-------~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~~~ 103 (145)
T 3n70_A 54 EFV-YRELTPDNA--------PQLNDFIA-------LAQGGTLVLSHPEHLTRE--------------QQYHLVQLQSQE 103 (145)
T ss_dssp CCE-EEECCTTTS--------SCHHHHHH-------HHTTSCEEEECGGGSCHH--------------HHHHHHHHHHSS
T ss_pred CEE-EECCCCCcc--------hhhhcHHH-------HcCCcEEEEcChHHCCHH--------------HHHHHHHHHhhc
Confidence 999 999887643 11222332 235689999999999887 899999999422
Q ss_pred eeeeecceeeecCCeEEEecCCCCcC
Q 012525 432 ETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 432 ~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
..+..+|+|+|.+.+
T Consensus 104 -----------~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 104 -----------HRPFRLIGIGDTSLV 118 (145)
T ss_dssp -----------SCSSCEEEEESSCHH
T ss_pred -----------CCCEEEEEECCcCHH
Confidence 224678888887653
No 32
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.49 E-value=1e-14 Score=129.00 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=85.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
++|++.+.+.+...+... .....+|||+||||||||++|++|++... +|+
T Consensus 6 ~iG~s~~~~~l~~~~~~~-----------------------------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAA-----------------------------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp --CCCHHHHHHHHHHHHH-----------------------------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred ceeCCHHHHHHHHHHHHH-----------------------------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 789988888877776311 12246899999999999999999999888 999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETK 434 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~ 434 (461)
.+++..+... + ...++.. +++++|||||||.+... .+..|+++|+...
T Consensus 56 ~~~~~~~~~~-~--------~~~~~~~-------a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~~-- 103 (143)
T 3co5_A 56 SPARVEYLID-M--------PMELLQK-------AEGGVLYVGDIAQYSRN--------------IQTGITFIIGKAE-- 103 (143)
T ss_dssp CCSSTTHHHH-C--------HHHHHHH-------TTTSEEEEEECTTCCHH--------------HHHHHHHHHHHHT--
T ss_pred EechhhCChH-h--------hhhHHHh-------CCCCeEEEeChHHCCHH--------------HHHHHHHHHHhCC--
Confidence 9999887642 1 2333332 35689999999999887 8899999998542
Q ss_pred eecceeeecCCeEEEecCCCCcCc
Q 012525 435 TFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 435 i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
..+..+|+|+|.+...
T Consensus 104 --------~~~~~iI~~tn~~~~~ 119 (143)
T 3co5_A 104 --------RCRVRVIASCSYAAGS 119 (143)
T ss_dssp --------TTTCEEEEEEEECTTT
T ss_pred --------CCCEEEEEecCCCHHH
Confidence 2357888888877544
No 33
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.48 E-value=2.1e-13 Score=133.74 Aligned_cols=146 Identities=25% Similarity=0.426 Sum_probs=96.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHH--HHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kr--i~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|++ |.|.+++|+.|.+.+...+.. ++... + + ..+.+++|+|||||||||||++||.
T Consensus 8 ~~~d-i~g~~~~~~~l~~~i~~~~~~~~~l~~~---~----------------l-~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 8 TWAD-IGALEDIREELTMAILAPVRNPDQFKAL---G----------------L-VTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHT---T----------------C-CCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHhhCHHHHHHc---C----------------C-CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4555 899999999999887544332 11110 0 0 1135699999999999999999999
Q ss_pred hcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 348 ~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
.++.+++.++..++.. .+.++. +..+..+|..+... .++++|+||||.+...+..... .....+.+.++..
T Consensus 67 ~~~~~~i~i~g~~l~~-~~~~~~-~~~i~~vf~~a~~~----~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~ 137 (274)
T 2x8a_A 67 ESGLNFISVKGPELLN-MYVGES-ERAVRQVFQRAKNS----APCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTE 137 (274)
T ss_dssp HTTCEEEEEETTTTCS-STTHHH-HHHHHHHHHHHHHT----CSEEEEEETCTTTCC------------CTTHHHHHHHH
T ss_pred HcCCCEEEEEcHHHHh-hhhhHH-HHHHHHHHHHHHhc----CCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHh
Confidence 9999999999988874 355554 56777788765332 5789999999998766432211 1122478899999
Q ss_pred HhCceeeeecceeeecCCeEEEecCCC
Q 012525 428 LEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 428 LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
|++.+.. +..++++++|.
T Consensus 138 Lsgg~~~---------~~~i~ia~tn~ 155 (274)
T 2x8a_A 138 MDGLEAR---------QQVFIMAATNR 155 (274)
T ss_dssp HHTCCST---------TCEEEEEEESC
T ss_pred hhccccc---------CCEEEEeecCC
Confidence 9976422 23456666653
No 34
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.46 E-value=2.7e-13 Score=144.21 Aligned_cols=150 Identities=27% Similarity=0.343 Sum_probs=101.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|++ |+|++++|+.|...+.. +. ....... .-...+.+|||+||||||||+||++||..++
T Consensus 30 f~d-v~G~~~~k~~l~~lv~~-l~---~~~~~~~---------------lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 30 FKD-VAGAEEAKEELKEIVEF-LK---NPSRFHE---------------MGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTS-SCSCHHHHHHHHHHHHH-HH---CGGGTTT---------------TSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHH-cCCcHHHHHHHHHHHHH-hh---chhhhhh---------------ccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 89999999999987742 11 1100000 0011246699999999999999999999999
Q ss_pred CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 351 ~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+|+.+++.++.. .+++.. ...++.+|..+.. ..++|+||||||.+...+...........+..++.|+..|++
T Consensus 90 ~~~i~i~g~~~~~-~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 90 VPFITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp CCEEEEEGGGGTS-SCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred CCEEEEehhHHHH-hhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 9999999998874 356554 4556677765432 257899999999998765421111122234577888988886
Q ss_pred ceeeeecceeeecCCeEEEecCCCC
Q 012525 431 TETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 431 ~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
.+. .+..++|+++|..
T Consensus 164 ~~~---------~~~viviAatn~p 179 (499)
T 2dhr_A 164 FEK---------DTAIVVMAATNRP 179 (499)
T ss_dssp CCS---------SCCCEEEECCSCG
T ss_pred ccc---------CccEEEEEecCCh
Confidence 542 1246788888743
No 35
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.46 E-value=1.6e-14 Score=143.15 Aligned_cols=137 Identities=26% Similarity=0.331 Sum_probs=96.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHH
Q 012525 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (461)
Q Consensus 265 ~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAra 344 (461)
..+...+.+.|+|++++++.+..++.. ..++||+||||||||++|++
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~---------------------------------~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICT---------------------------------GGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHH---------------------------------TCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHc---------------------------------CCeEEEECCCCCcHHHHHHH
Confidence 346666777799999999888776621 26799999999999999999
Q ss_pred HHHhcCCceEEecch-hhhhcCcccccHHHHHHHHHHhhchh--hhc--cCceEEEEcCccccchhhhccccccccchHH
Q 012525 345 LARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEFN--VEA--AQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 345 LA~~l~~pfv~i~~s-~l~~~g~vGe~~e~~L~~lf~~a~~~--v~~--a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
+|+.++.+++.+++. ++....+.|... +...... +.. -..+||||||||.+..+
T Consensus 66 la~~~~~~~~~i~~~~~~~~~~l~g~~~-------~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~-------------- 124 (331)
T 2r44_A 66 LAKTMDLDFHRIQFTPDLLPSDLIGTMI-------YNQHKGNFEVKKGPVFSNFILADEVNRSPAK-------------- 124 (331)
T ss_dssp HHHHTTCCEEEEECCTTCCHHHHHEEEE-------EETTTTEEEEEECTTCSSEEEEETGGGSCHH--------------
T ss_pred HHHHhCCCeEEEecCCCCChhhcCCcee-------ecCCCCceEeccCcccccEEEEEccccCCHH--------------
Confidence 999999999988874 221111111100 0000000 000 02379999999998887
Q ss_pred HHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 420 VQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 420 v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
+++.|++.|+...+.+.......+.++++|+|+|..
T Consensus 125 ~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 125 VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 899999999988877754455556689999999944
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.46 E-value=4.3e-13 Score=132.90 Aligned_cols=131 Identities=21% Similarity=0.342 Sum_probs=92.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ ++|++.+++.|...+..... . .....+|||+||||||||++|+++|+.+
T Consensus 27 ~~~~-iiG~~~~~~~l~~~l~~~~~--------~------------------~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 27 NFDG-YIGQESIKKNLNVFIAAAKK--------R------------------NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHHHHH--------T------------------TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHH-hCChHHHHHHHHHHHHHHHh--------c------------------CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3455 89999999999888742210 0 0123679999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+|+.+++..+.. ...+...+.. .+++++||||||+.+... .++.|+..|+
T Consensus 80 ~~~~~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~ 131 (338)
T 3pfi_A 80 SANIKTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAME 131 (338)
T ss_dssp TCCEEEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCeEEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHH
Confidence 99999999987652 2333444432 247889999999999877 8999999999
Q ss_pred Cceeeeeccee----e--ecC-CeEEEecCCCC
Q 012525 430 GTETKTFAAVS----K--VSR-DNLYIKTSGLD 455 (461)
Q Consensus 430 g~~v~i~~~~r----~--~~r-d~IiI~TsNid 455 (461)
...+.+..... . ... ++++|+++|..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~ 164 (338)
T 3pfi_A 132 DYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA 164 (338)
T ss_dssp TSCC---------CCCCCCCCCCCEEEEEESCG
T ss_pred hccchhhcccCccccceecCCCCeEEEEeCCCc
Confidence 87655432211 1 111 47888888863
No 37
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=2.1e-13 Score=152.90 Aligned_cols=164 Identities=28% Similarity=0.396 Sum_probs=106.0
Q ss_pred CCCCCCCCCCCCCCCHH----HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhcccccccccc
Q 012525 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (461)
Q Consensus 249 ~~~w~g~~l~~~l~t~~----el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 324 (461)
..+|++.+..+...... .+...+.+.|+||+.+++.|..++..... +. ......
T Consensus 530 v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~---------g~-------------~~~~~p 587 (854)
T 1qvr_A 530 VSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARA---------GL-------------KDPNRP 587 (854)
T ss_dssp HHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGG---------GC-------------SCSSSC
T ss_pred HHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhc---------cc-------------CCCCCC
Confidence 35566654443333332 24556667799999999999888842100 00 000011
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc-----------CcccccHHHHHHHHHHhhchhhhccC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~-----------g~vGe~~e~~L~~lf~~a~~~v~~a~ 390 (461)
..++||+||||||||++|++||+.+ +.+|+.++++.+... +|+|......+...+ ....
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~-------~~~~ 660 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRP 660 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHH-------HHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHH-------HhCC
Confidence 2479999999999999999999998 779999999876542 122322112222222 2235
Q ss_pred ceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 391 ~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
++|||||||+++... +++.|+++||.+.+..........++.++|+|||.+
T Consensus 661 ~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~ 711 (854)
T 1qvr_A 661 YSVILFDEIEKAHPD--------------VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLG 711 (854)
T ss_dssp SEEEEESSGGGSCHH--------------HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTT
T ss_pred CeEEEEecccccCHH--------------HHHHHHHHhccCceECCCCCEeccCCeEEEEecCcC
Confidence 689999999999887 999999999987765322222222478999999984
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.45 E-value=9.4e-14 Score=133.48 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=89.7
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ ++|++.+.+.+...+... .....+|||+||||||||++|++|++.+
T Consensus 4 ~f~~-~ig~~~~~~~~~~~~~~~-----------------------------~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 4 YKDN-LLGEANSFLEVLEQVSHL-----------------------------APLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------------------------TTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cccc-ceeCCHHHHHHHHHHHHH-----------------------------hCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3555 689988888777666310 0123689999999999999999999987
Q ss_pred C---CceEEecchhhhhc----CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHH
Q 012525 350 N---VPFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (461)
Q Consensus 350 ~---~pfv~i~~s~l~~~----g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~ 422 (461)
. .+|+.++|+.+... .+.|.. ...+........+.+..+.+++||||||+.+... +++
T Consensus 54 ~~~~~~~~~v~~~~~~~~~~~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~ 118 (265)
T 2bjv_A 54 SRWQGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQE 118 (265)
T ss_dssp TTTTSCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHH
T ss_pred CccCCCeEEEecCCCChhHHHHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH--------------HHH
Confidence 5 68999999876421 001110 0000001111122344457889999999999887 899
Q ss_pred HHHHHHhCceeeeecceeeecCCeEEEecCCCCc
Q 012525 423 ALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 423 aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
.|+.+|+...+...........++.+|+|+|.++
T Consensus 119 ~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~ 152 (265)
T 2bjv_A 119 KLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (265)
T ss_dssp HHHHHHHHCEECCCCC--CEECCCEEEEEESSCH
T ss_pred HHHHHHHhCCeecCCCcccccCCeEEEEecCcCH
Confidence 9999999766543333333344788999999864
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.44 E-value=8.9e-15 Score=140.43 Aligned_cols=147 Identities=28% Similarity=0.408 Sum_probs=92.3
Q ss_pred cCChHHHHHHHHHHHHHH-HHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCce
Q 012525 275 VIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~-~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
|+|++.+++.|...+... +...+... + ...+.++||+||||||||++|++||+.++.+|
T Consensus 13 i~G~~~~~~~l~~~~~~~~~~~~~~~~---~-----------------~~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDFLKYPERYANL---G-----------------AKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp SSSCTTTHHHHHHHHHHHHCHHHHHHH---S-----------------CCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred hCCcHHHHHHHHHHHHHHHChHHHHHC---C-----------------CCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 899999999998876421 01111100 0 11246799999999999999999999999999
Q ss_pred EEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccc-ccccchHHHHHHHHHHHhCce
Q 012525 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI-SRDVSGEGVQQALLKMLEGTE 432 (461)
Q Consensus 354 v~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~-~~~~s~~~v~~aLL~~LEg~~ 432 (461)
+.+++.++.. .+.+.. +..++.+|..+.. ..++||||||||.|...+..... ..+.....+++.|+..|++..
T Consensus 73 ~~v~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 73 FSMGGSSFIE-MFVGLG-ASRVRDLFETAKK----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp CCCCSCTTTT-SCSSSC-SSSSSTTHHHHHH----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred EEechHHHHH-hhcchH-HHHHHHHHHHHHh----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 9999988774 355544 2333444544332 25789999999999887532211 111111225677787777432
Q ss_pred eeeecceeeecCCeEEEecCCCC
Q 012525 433 TKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 433 v~i~~~~r~~~rd~IiI~TsNid 455 (461)
. ...+.++|+|+|..
T Consensus 147 ~--------~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 147 S--------ENAPVIVLAATNRP 161 (268)
T ss_dssp C--------SCSCCEEEECBSCC
T ss_pred c--------CCCCEEEEEecCCc
Confidence 1 11257888888865
No 40
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.43 E-value=1.5e-13 Score=136.65 Aligned_cols=132 Identities=25% Similarity=0.378 Sum_probs=94.6
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---C
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---N 350 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---~ 350 (461)
.++|++.+.+.+...+.. ++....+|||+||||||||++|++|++.. +
T Consensus 3 ~iig~s~~~~~~~~~~~~-----------------------------~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~ 53 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAM-----------------------------VAPSDATVLIHGDSGTGKELVARALHACSARSD 53 (304)
T ss_dssp CCCCCSHHHHHHHHHHHH-----------------------------HCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS
T ss_pred CcEECCHHHHHHHHHHHH-----------------------------HhCCCCcEEEECCCCchHHHHHHHHHHhCcccC
Confidence 478888887777666631 11234789999999999999999999965 5
Q ss_pred CceEEecchhhhhcCcccccHHHHHHHHHH-----------hhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 351 VPFVIADATTLTQAGYVGEDVESILYKLLA-----------QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 351 ~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~-----------~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
.+|+.++|..+... ..+ ..+|. ...+.+..+++++||||||+.|...
T Consensus 54 ~~~v~v~~~~~~~~-----l~~---~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~-------------- 111 (304)
T 1ojl_A 54 RPLVTLNCAALNES-----LLE---SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPL-------------- 111 (304)
T ss_dssp SCCCEEECSSCCHH-----HHH---HHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------
T ss_pred CCeEEEeCCCCChH-----HHH---HHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------
Confidence 78999999876531 001 11111 1122344457789999999999887
Q ss_pred HHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCc
Q 012525 420 VQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 420 v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
+|..|+.+|+...+...........++.+|+|+|.++
T Consensus 112 ~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l 148 (304)
T 1ojl_A 112 MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL 148 (304)
T ss_dssp HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCH
T ss_pred HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccH
Confidence 8999999999877654444444455889999999874
No 41
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.41 E-value=7.3e-13 Score=140.93 Aligned_cols=142 Identities=19% Similarity=0.258 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHH
Q 012525 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (461)
Q Consensus 265 ~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAra 344 (461)
..+...+.+.|+|++.+++.+..++. ...+|||+||||||||+||++
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~---------------------------------~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAAL---------------------------------SGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHH---------------------------------HTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHh---------------------------------cCCeeEeecCchHHHHHHHHH
Confidence 45778888889999999988877662 136899999999999999999
Q ss_pred HHHhcCC--ceEEecchhhhhcCcccc-cHHHHH-HHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHH
Q 012525 345 LARHVNV--PFVIADATTLTQAGYVGE-DVESIL-YKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 345 LA~~l~~--pfv~i~~s~l~~~g~vGe-~~e~~L-~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
||+.+.. +|..+.+.......++|. ...... ...+....... ....+|||||||+++.++ +
T Consensus 61 La~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~-l~~~~IL~IDEI~r~~~~--------------~ 125 (500)
T 3nbx_X 61 LKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGY-LPEAEIVFLDEIWKAGPA--------------I 125 (500)
T ss_dssp GGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTS-GGGCSEEEEESGGGCCHH--------------H
T ss_pred HHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccC-CCcceeeeHHhHhhhcHH--------------H
Confidence 9998843 555555532111112221 111100 11121111100 013569999999998887 8
Q ss_pred HHHHHHHHhCceeeeecceeeecCCeEEEecCCC
Q 012525 421 QQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 421 ~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
+++|+.+|+++.+.+.......+..+++++|.++
T Consensus 126 q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~l 159 (500)
T 3nbx_X 126 LNTLLTAINERQFRNGAHVEKIPMRLLVAASNEL 159 (500)
T ss_dssp HHHHHHHHHSSEEECSSSEEECCCCEEEEEESSC
T ss_pred HHHHHHHHHHHhccCCCCcCCcchhhhhhccccC
Confidence 9999999999888775445555556645555433
No 42
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=4e-14 Score=153.34 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=99.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHH
Q 012525 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (461)
Q Consensus 264 ~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAr 343 (461)
...+...+...|+|++.+|+.|..++. .+ ..... . . .-.....||||+||||||||+||+
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~------------~g--~~~~~---~-~--~~~r~~~~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALF------------GG--VPKVL---E-D--TRIRGDIHILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTT------------CC--CCEET---T-T--TEECCSCCEEEEESSCCTHHHHHH
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHh------------CC--Ccccc---c-C--CCcCCCcceEEECCCchHHHHHHH
Confidence 345777888889999999987755541 00 00000 0 0 111223589999999999999999
Q ss_pred HHHHhcCCceEEe----cchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHH
Q 012525 344 TLARHVNVPFVIA----DATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (461)
Q Consensus 344 aLA~~l~~pfv~i----~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~ 419 (461)
++|+.+...++.. .+..+.. ..........+....+.+..++++||||||||++...
T Consensus 346 ~la~~~~r~~~~~~~~~~~~~l~~-----~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-------------- 406 (595)
T 3f9v_A 346 FISRVAPRAVYTTGKGSTAAGLTA-----AVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-------------- 406 (595)
T ss_dssp SSSTTCSCEECCCTTCSTTTTSEE-----ECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------
T ss_pred HHHHhCCCceecCCCccccccccc-----eeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------
Confidence 9999997655442 2222221 1111111111111223344567899999999999888
Q ss_pred HHHHHHHHHhCceeeee--cceeeecCCeEEEecCCCC
Q 012525 420 VQQALLKMLEGTETKTF--AAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 420 v~~aLL~~LEg~~v~i~--~~~r~~~rd~IiI~TsNid 455 (461)
.+++|+++||.+.+.+. ......+.++.+|+|+|..
T Consensus 407 ~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 407 DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 89999999998888765 2244556689999999975
No 43
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.39 E-value=2.4e-14 Score=159.95 Aligned_cols=147 Identities=24% Similarity=0.312 Sum_probs=104.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|+|++.+|+.|.+.+..... .. ..........+.++||+||||||||+||++||+.++.+|+
T Consensus 479 i~gl~~vk~~l~~~v~~~~~-------~~-----------~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 479 IGGLEDVKRELQELVQYPVE-------HP-----------DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp SSCCCCHHHHHHTTTTSSSS-------SC-----------TTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred cccchhhhhhHHHHHHhhhh-------ch-----------HHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 78999999988876621000 00 0001111234578999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETK 434 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~ 434 (461)
.+++.++.. .|+|+. +..++.+|..+... .++||||||||.+...|.............++++||..|++....
T Consensus 541 ~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 541 SIKGPELLT-MWFGES-EANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp CCCCSSSTT-CCTTTS-SHHHHHHHHHHHHH----CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred EEechHhhh-hhcCcc-HHHHHHHHHHHHhc----CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 999999884 588887 67788888876654 578999999999988865432222233456889999999865321
Q ss_pred eecceeeecCCeEEEecCCC
Q 012525 435 TFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 435 i~~~~r~~~rd~IiI~TsNi 454 (461)
.+.++|+|||.
T Consensus 615 ---------~~v~vI~tTN~ 625 (806)
T 1ypw_A 615 ---------KNVFIIGATNR 625 (806)
T ss_dssp ----------CCBCCCCCBS
T ss_pred ---------CCeEEEEecCC
Confidence 25788899985
No 44
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.39 E-value=3.1e-13 Score=141.22 Aligned_cols=105 Identities=28% Similarity=0.347 Sum_probs=80.9
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC--C
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--V 351 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~--~ 351 (461)
.|+||+++|+.+...+... . .+ ...+.++||+||||||||++|+++|+.++ .
T Consensus 38 ~iiG~~~~~~~l~~~~~~~----~-----~~-----------------~~~~~~iLl~GppGtGKT~la~ala~~l~~~~ 91 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELI----K-----SK-----------------KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91 (456)
T ss_dssp TEESCHHHHHHHHHHHHHH----H-----TT-----------------CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTS
T ss_pred hccCHHHHHHHHHHHHHHH----H-----hC-----------------CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCc
Confidence 3899999999988776311 0 01 01247899999999999999999999999 8
Q ss_pred ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhc
Q 012525 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES 408 (461)
Q Consensus 352 pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~ 408 (461)
+|+.++++++. ..++|+. +. +..+|..+.. .....++||||||||.+..+|..
T Consensus 92 ~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~~ 144 (456)
T 2c9o_A 92 PFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCETE 144 (456)
T ss_dssp CEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC---
T ss_pred eEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccCC
Confidence 99999999988 4578776 44 8888887732 23347899999999999988754
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.39 E-value=6.3e-13 Score=131.43 Aligned_cols=114 Identities=17% Similarity=0.305 Sum_probs=70.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC-------ceEEecchhhhhcC----------------c----ccccHHHHH---
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV-------PFVIADATTLTQAG----------------Y----VGEDVESIL--- 375 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~-------pfv~i~~s~l~~~g----------------~----vGe~~e~~L--- 375 (461)
.+|||+||||||||++|++||+.++. +| ++....... + .+......+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 57999999999999999999998863 21 111111000 0 011111111
Q ss_pred --HHHHHhh-----chhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc--eeeecCCe
Q 012525 376 --YKLLAQA-----EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA--VSKVSRDN 446 (461)
Q Consensus 376 --~~lf~~a-----~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~--~r~~~rd~ 446 (461)
...+... .+.+..++++||||||||.+... +++.|+..|+.....+... ....+.++
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~ 188 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGLSIRHPARF 188 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTCCEEEECCE
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecceEEeeCCce
Confidence 1122221 12233456889999999999887 8999999999765333322 33444589
Q ss_pred EEEecCCCCc
Q 012525 447 LYIKTSGLDS 456 (461)
Q Consensus 447 IiI~TsNid~ 456 (461)
++|+|+|...
T Consensus 189 ~li~~~n~~~ 198 (350)
T 1g8p_A 189 VLVGSGNPEE 198 (350)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEeCCCC
Confidence 9999999643
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.38 E-value=4.7e-13 Score=129.29 Aligned_cols=111 Identities=28% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccH---HHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDV---ESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~---e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
..++||+||||||||++|+++|+.++.+|+.+++.+. +.|... ...++.+|..+. ...++||||||||.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIER 135 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhh
Confidence 4689999999999999999999999999999988753 233331 234455555432 23678999999999
Q ss_pred cchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
|...+... ......+++.|+..|++... ...+.++|+|+|..
T Consensus 136 l~~~~~~~----~~~~~~~l~~L~~~~~~~~~--------~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 136 LLDYVPIG----PRFSNLVLQALLVLLKKAPP--------QGRKLLIIGTTSRK 177 (272)
T ss_dssp HTTCBTTT----TBCCHHHHHHHHHHTTCCCS--------TTCEEEEEEEESCH
T ss_pred hhccCCCC----hhHHHHHHHHHHHHhcCccC--------CCCCEEEEEecCCh
Confidence 86553211 11223467777777764210 11246788888764
No 47
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.37 E-value=2.7e-12 Score=122.51 Aligned_cols=137 Identities=30% Similarity=0.397 Sum_probs=87.7
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+|++.+++.+...+.. +... ......+ . ..+.+++|+||||||||||+++||..+
T Consensus 14 ~~~~-i~g~~~~~~~l~~l~~~-~~~~-~~~~~~~----------------~-~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 14 TFKD-VAGAEEAKEELKEIVEF-LKNP-SRFHEMG----------------A-RIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CGGG-CCSCHHHHHHHHHHHHH-HHCH-HHHHHTT----------------C-CCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CHHH-hCCcHHHHHHHHHHHHH-HHCH-HHHHHcC----------------C-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3455 89999999999887642 2110 0000000 0 113569999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+++.+++.++... +.+.. ...+..+|..+.. ..++++||||||.+...+..............++.|+..|+
T Consensus 74 ~~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 147 (254)
T 1ixz_A 74 RVPFITASGSDFVEM-FVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 147 (254)
T ss_dssp TCCEEEEEHHHHHHS-CTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeHHHHHHH-HhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHh
Confidence 999999999887642 44443 4556666765432 25689999999988766432111112223457788888888
Q ss_pred Cce
Q 012525 430 GTE 432 (461)
Q Consensus 430 g~~ 432 (461)
+.+
T Consensus 148 g~~ 150 (254)
T 1ixz_A 148 GFE 150 (254)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 48
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.35 E-value=6.5e-13 Score=142.22 Aligned_cols=152 Identities=24% Similarity=0.333 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHH
Q 012525 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (461)
Q Consensus 264 ~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAr 343 (461)
..+..+.|++.++|++.+++.+...+... .+.. ...+.++||+||||||||+||+
T Consensus 72 ~~~~~~~l~~di~G~~~vk~~i~~~~~l~--~~~~-----------------------~~~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 72 LKEAGRLLDEEHHGLEKVKERILEYLAVQ--KLTK-----------------------SLKGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp TTTGGGTHHHHCSSCHHHHHHHHHHHHHH--HHSS-----------------------SCCSCEEEEESSSSSSHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH--Hhcc-----------------------cCCCCEEEEECCCCCCHHHHHH
Confidence 44556778888999999999987765311 1100 0134689999999999999999
Q ss_pred HHHHhcCCceEEecchhhhhc--------CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhcccccccc
Q 012525 344 TLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (461)
Q Consensus 344 aLA~~l~~pfv~i~~s~l~~~--------g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~ 415 (461)
+||+.++.+|+.+++..+... .|+|.. ...+...|..+. ...+||||||||++..++..
T Consensus 127 ~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~~------- 193 (543)
T 3m6a_A 127 SIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFRG------- 193 (543)
T ss_dssp HHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC------------
T ss_pred HHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhcc-------
Confidence 999999999999988765431 233322 222333343332 24569999999999887321
Q ss_pred chHHHHHHHHHHHhCceeeeecc---eeeec-CCeEEEecCCCCc
Q 012525 416 SGEGVQQALLKMLEGTETKTFAA---VSKVS-RDNLYIKTSGLDS 456 (461)
Q Consensus 416 s~~~v~~aLL~~LEg~~v~i~~~---~r~~~-rd~IiI~TsNid~ 456 (461)
..+++||++||..+...... ..... .+.++|+|+|...
T Consensus 194 ---~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~ 235 (543)
T 3m6a_A 194 ---DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA 235 (543)
T ss_dssp -------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT
T ss_pred ---CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc
Confidence 15789999998655433222 22222 3689999999753
No 49
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.35 E-value=5.2e-12 Score=123.73 Aligned_cols=128 Identities=23% Similarity=0.344 Sum_probs=91.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
++|++.+++.|...+...... .....+|||+||+|||||++|+++|+.++.+|+
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~--------------------------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKAR--------------------------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH--------------------------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred hhCHHHHHHHHHHHHHHHHcc--------------------------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 799999999888877421100 012367999999999999999999999999999
Q ss_pred EecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceee
Q 012525 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETK 434 (461)
Q Consensus 355 ~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~ 434 (461)
.+++..+.. ...+...+.. ..+.+++||||||+.+... .++.|+..|+...+.
T Consensus 68 ~~~~~~~~~--------~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~ 120 (324)
T 1hqc_A 68 VTSGPAIEK--------PGDLAAILAN-----SLEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMD 120 (324)
T ss_dssp EECTTTCCS--------HHHHHHHHTT-----TCCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEE
T ss_pred EEeccccCC--------hHHHHHHHHH-----hccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhH
Confidence 998877642 2333333322 1246789999999999877 789999999977655
Q ss_pred eecceee-------ecCCeEEEecCCCC
Q 012525 435 TFAAVSK-------VSRDNLYIKTSGLD 455 (461)
Q Consensus 435 i~~~~r~-------~~rd~IiI~TsNid 455 (461)
+...... ...++++|+++|..
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~i~~t~~~ 148 (324)
T 1hqc_A 121 IVIGQGPAARTIRLELPRFTLIGATTRP 148 (324)
T ss_dssp ECCSSSSSCCCEEEECCCCEEEEEESCC
T ss_pred HhccccccccccccCCCCEEEEEeCCCc
Confidence 4432111 11257888888855
No 50
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.34 E-value=2e-12 Score=135.51 Aligned_cols=109 Identities=30% Similarity=0.427 Sum_probs=77.0
Q ss_pred HHHhhcCChHHHH---HHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHH
Q 012525 270 GLDKFVIGQEKAK---KVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 270 ~Ld~~VvGqd~aK---~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
.|++ |+||+.++ +.|...+.. + ...+|||+||||||||++|++||
T Consensus 24 ~l~~-ivGq~~~~~~~~~L~~~i~~------------~-------------------~~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 24 NLAQ-YIGQQHLLAAGKPLPRAIEA------------G-------------------HLHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp STTT-CCSCHHHHSTTSHHHHHHHH------------T-------------------CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHH-hCCcHHHHhchHHHHHHHHc------------C-------------------CCcEEEEECCCCCcHHHHHHHHH
Confidence 3455 89999998 666666631 0 12579999999999999999999
Q ss_pred HhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHH
Q 012525 347 RHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (461)
Q Consensus 347 ~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~ 426 (461)
+.++.+|+.+++.... ...++.++..+.......+++||||||||.+... .++.||.
T Consensus 72 ~~~~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~ 128 (447)
T 3pvs_A 72 RYANADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLP 128 (447)
T ss_dssp HHTTCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHH
T ss_pred HHhCCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHH
Confidence 9999999998865432 2344555554444334557899999999999877 7889999
Q ss_pred HHhCcee
Q 012525 427 MLEGTET 433 (461)
Q Consensus 427 ~LEg~~v 433 (461)
.||...+
T Consensus 129 ~le~~~v 135 (447)
T 3pvs_A 129 HIEDGTI 135 (447)
T ss_dssp HHHTTSC
T ss_pred HHhcCce
Confidence 9996543
No 51
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.31 E-value=1.2e-11 Score=120.09 Aligned_cols=150 Identities=27% Similarity=0.364 Sum_probs=93.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ |+|++.+++.|...+.. +... ....... . ..+.+++|+||+|||||||+++||..+
T Consensus 38 ~~~~-i~g~~~~~~~l~~l~~~-~~~~-~~l~~~~----------------~-~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 38 TFKD-VAGAEEAKEELKEIVEF-LKNP-SRFHEMG----------------A-RIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CGGG-SSSCHHHHHHHHHHHHH-HHCH-HHHHHTT----------------C-CCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CHHH-hCChHHHHHHHHHHHHH-HHCH-HHHHHcC----------------C-CCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 4555 89999999999887642 1110 0000000 0 113559999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
..+++.+++.++... +.+.. ...+..+|..+.. ..++++||||||.+...+..............++.++..|+
T Consensus 98 ~~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 98 RVPFITASGSDFVEM-FVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp TCCEEEEEHHHHHHS-TTTHH-HHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred CCCEEEecHHHHHHH-HhhHH-HHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence 999999999887642 44433 4455666665432 25689999999988765432110111122346677888888
Q ss_pred CceeeeecceeeecCCeEEEecCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
+.+.. +..++++++|.
T Consensus 172 gg~~~---------~~~i~~a~t~~ 187 (278)
T 1iy2_A 172 GFEKD---------TAIVVMAATNR 187 (278)
T ss_dssp TCCTT---------CCEEEEEEESC
T ss_pred CCCCC---------CCEEEEEecCC
Confidence 65421 23566666654
No 52
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.29 E-value=5.6e-12 Score=140.92 Aligned_cols=148 Identities=27% Similarity=0.400 Sum_probs=106.4
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ |+|++.+++.|.+.+..... +..... ......+.+|||+||||||||+||++||..+
T Consensus 202 ~~~d-i~G~~~~~~~l~e~i~~~l~---~~~~~~---------------~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 202 GYDD-VGGCRKQLAQIKEMVELPLR---HPALFK---------------AIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CGGG-CCSCSGGGGHHHHHHHHHHH---CGGGGT---------------SSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CHHH-hCChHHHHHHHHHHHHHHhh---CHHHHH---------------hcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3455 89999999999998853221 111100 0012335789999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.+|+.+++.++.. .+.++. +..+..+|..+... .+++|||||||.+...+... .......+++.|+.+|+
T Consensus 263 ~~~~i~v~~~~l~~-~~~g~~-~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 263 GAFFFLINGPEIMS-KLAGES-ESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMD 333 (806)
T ss_dssp TCEEEEEEHHHHSS-SSTTHH-HHHHHHHHHHHHHH----CSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEchHhhh-hhhhhH-HHHHHHHHHHHHhc----CCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhh
Confidence 99999999998874 466655 67778888766543 67899999999999875421 22233558899999999
Q ss_pred CceeeeecceeeecCCeEEEecCCC
Q 012525 430 GTETKTFAAVSKVSRDNLYIKTSGL 454 (461)
Q Consensus 430 g~~v~i~~~~r~~~rd~IiI~TsNi 454 (461)
+.... ...++|+|+|.
T Consensus 334 g~~~~---------~~v~vI~atn~ 349 (806)
T 1ypw_A 334 GLKQR---------AHVIVMAATNR 349 (806)
T ss_dssp SSCTT---------SCCEEEEECSC
T ss_pred hhccc---------ccEEEecccCC
Confidence 65421 25677788775
No 53
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.29 E-value=1.2e-11 Score=109.98 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=76.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-----
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l----- 349 (461)
++|++.+.+.+...+.. ....++||+||+|||||++|+++++.+
T Consensus 24 ~~g~~~~~~~l~~~l~~-------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~ 72 (187)
T 2p65_A 24 VIGRDTEIRRAIQILSR-------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDV 72 (187)
T ss_dssp CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCS
T ss_pred hhcchHHHHHHHHHHhC-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 78999888877766520 113679999999999999999999987
Q ss_pred -----CCceEEecchhhhhcC-cccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHH
Q 012525 350 -----NVPFVIADATTLTQAG-YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (461)
Q Consensus 350 -----~~pfv~i~~s~l~~~g-~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~a 423 (461)
+.+++.+++..+.... +.+ .....+..++..... ...+.||||||+|.+...+........ +++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~~~~-----~~~~ 143 (187)
T 2p65_A 73 PDSLKGRKLVSLDLSSLIAGAKYRG-DFEERLKSILKEVQD---AEGQVVMFIDEIHTVVGAGAVAEGALD-----AGNI 143 (187)
T ss_dssp CTTTTTCEEEEECHHHHHHHCCSHH-HHHHHHHHHHHHHHH---TTTSEEEEETTGGGGSSSSSSCTTSCC-----THHH
T ss_pred cchhcCCeEEEEeHHHhhcCCCchh-HHHHHHHHHHHHHHh---cCCceEEEEeCHHHhcccccccccchH-----HHHH
Confidence 6788888887665321 222 223444444443321 125679999999999855321111111 6777
Q ss_pred HHHHHhCc
Q 012525 424 LLKMLEGT 431 (461)
Q Consensus 424 LL~~LEg~ 431 (461)
|+.+++..
T Consensus 144 l~~~~~~~ 151 (187)
T 2p65_A 144 LKPMLARG 151 (187)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 88888743
No 54
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.28 E-value=1.9e-11 Score=125.43 Aligned_cols=131 Identities=18% Similarity=0.337 Sum_probs=104.2
Q ss_pred CCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhhhcCcccccHHHHHHHHHH-
Q 012525 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLA- 380 (461)
Q Consensus 305 ~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~- 380 (461)
.+.+..+..+.+.+..++....+|||+|++|||||++|++|+.... .+|+.++|+.+... -.-..+|.
T Consensus 140 ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~--------~~~~elfg~ 211 (387)
T 1ny5_A 140 VFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD--------IFEAELFGY 211 (387)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH--------HHHHHHHCB
T ss_pred hhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHH--------HHHHHhcCC
Confidence 4567888888888888888999999999999999999999998764 69999999987632 11122332
Q ss_pred ----------hhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEe
Q 012525 381 ----------QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIK 450 (461)
Q Consensus 381 ----------~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~ 450 (461)
...+.++.+++|+||||||+.|... +|..|+++|+.+.+...........++.+|+
T Consensus 212 ~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 212 EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLE--------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHH--------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 1234456678999999999999998 9999999999887765555555556899999
Q ss_pred cCCCCcC
Q 012525 451 TSGLDSK 457 (461)
Q Consensus 451 TsNid~e 457 (461)
|||.+.+
T Consensus 278 at~~~l~ 284 (387)
T 1ny5_A 278 ATNRNIK 284 (387)
T ss_dssp EESSCHH
T ss_pred eCCCCHH
Confidence 9998764
No 55
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.25 E-value=2.7e-11 Score=120.94 Aligned_cols=65 Identities=25% Similarity=0.426 Sum_probs=47.5
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+++ ++|++.+++.+..++... .. + ...+.++||+||||||||++|+++|+.++
T Consensus 43 ~~~-ivG~~~~~~~l~~l~~~~-----~~----~-----------------~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQG-MVGQLAARRAAGVVLEMI-----RE----G-----------------KIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETT-EESCHHHHHHHHHHHHHH-----HT----T-----------------CCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhh-ccChHHHHHHHHHHHHHH-----Hc----C-----------------CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444 899999999877655211 00 0 01136899999999999999999999997
Q ss_pred C--ceEEecchhhh
Q 012525 351 V--PFVIADATTLT 362 (461)
Q Consensus 351 ~--pfv~i~~s~l~ 362 (461)
. +|+.+++..+.
T Consensus 96 ~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 96 PDTPFTAIAGSEIF 109 (368)
T ss_dssp SSCCEEEEEGGGGS
T ss_pred ccCCcccccchhhh
Confidence 5 78888776533
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.23 E-value=4.3e-11 Score=105.98 Aligned_cols=116 Identities=23% Similarity=0.345 Sum_probs=75.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-----
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l----- 349 (461)
++|++..++.+...+.. ....++||+||+|||||++|+++++.+
T Consensus 24 ~~g~~~~~~~l~~~l~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~ 72 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 72 (195)
T ss_dssp CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCS
T ss_pred cccchHHHHHHHHHHhc-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 78999888877776620 123679999999999999999999986
Q ss_pred -----CCceEEecchhhhhc-CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHH
Q 012525 350 -----NVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (461)
Q Consensus 350 -----~~pfv~i~~s~l~~~-g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~a 423 (461)
+.+++.+++..+... .+.+. ....+..++.... ....+.||||||+|.+...+.. ..... +++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~-~~~~~-----~~~~ 142 (195)
T 1jbk_A 73 PEGLKGRRVLALDMGALVAGAKYRGE-FEERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA-DGAMD-----AGNM 142 (195)
T ss_dssp CGGGTTCEEEEECHHHHHTTTCSHHH-HHHHHHHHHHHHH---HSTTTEEEEEETGGGGTT-------CCC-----CHHH
T ss_pred chhhcCCcEEEeeHHHHhccCCcccc-HHHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCcc-cchHH-----HHHH
Confidence 678888888876532 22222 2444555554322 1235679999999999865321 11111 5677
Q ss_pred HHHHHhCc
Q 012525 424 LLKMLEGT 431 (461)
Q Consensus 424 LL~~LEg~ 431 (461)
|+.+++..
T Consensus 143 l~~~~~~~ 150 (195)
T 1jbk_A 143 LKPALARG 150 (195)
T ss_dssp HHHHHHTT
T ss_pred HHHhhccC
Confidence 77777744
No 57
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.22 E-value=2.3e-11 Score=119.93 Aligned_cols=107 Identities=23% Similarity=0.281 Sum_probs=76.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ ++|++.+++.|...+. .+ ..+..+||+||||||||++|+++|+.+
T Consensus 24 ~~~~-ivg~~~~~~~l~~~l~------------~~------------------~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 24 TIDE-CILPAFDKETFKSITS------------KG------------------KIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp STTT-SCCCHHHHHHHHHHHH------------TT------------------CCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CHHH-HhCcHHHHHHHHHHHH------------cC------------------CCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4555 7999999998888773 00 112456788889999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHh-hchhhhccCceEEEEcCccccc-hhhhccccccccchHHHHHHHHHH
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQ-AEFNVEAAQQGMVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~-a~~~v~~a~~gVLfIDEID~L~-~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
+.+++.+++++.. ...++..+.. +..........||||||+|.+. .. .++.|+..
T Consensus 73 ~~~~~~i~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~ 129 (324)
T 3u61_B 73 NADMMFVNGSDCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE--------------SQRHLRSF 129 (324)
T ss_dssp TEEEEEEETTTCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH--------------HHHHHHHH
T ss_pred CCCEEEEcccccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH--------------HHHHHHHH
Confidence 9999999986633 2233332222 1111112367899999999998 65 78999999
Q ss_pred HhC
Q 012525 428 LEG 430 (461)
Q Consensus 428 LEg 430 (461)
|+.
T Consensus 130 le~ 132 (324)
T 3u61_B 130 MEA 132 (324)
T ss_dssp HHH
T ss_pred HHh
Confidence 984
No 58
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.20 E-value=1.3e-11 Score=126.05 Aligned_cols=133 Identities=26% Similarity=0.392 Sum_probs=100.4
Q ss_pred CCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCC--ceEEecchhhhhcCcccccHHHHHHH----HH
Q 012525 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGEDVESILYK----LL 379 (461)
Q Consensus 306 ~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~--pfv~i~~s~l~~~g~vGe~~e~~L~~----lf 379 (461)
+.+..+.........++....+||++|++||||+++|+++++..+. .|+.++|+.+.+. ..++.+.. .|
T Consensus 133 g~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~-----~~~~~lfg~~~g~~ 207 (368)
T 3dzd_A 133 GEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE-----LAESELFGHEKGAF 207 (368)
T ss_dssp CCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT-----THHHHHHEECSCSS
T ss_pred ccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH-----HHHHHhcCcccccc
Confidence 4556666666667777778889999999999999999999987754 3999999987642 12222211 01
Q ss_pred ----HhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCC
Q 012525 380 ----AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 380 ----~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid 455 (461)
....+.++.+++++||||||+.|... +|..||++|+.+.+...........++.+|++||.+
T Consensus 208 tga~~~~~g~~~~a~~gtlfldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~ 273 (368)
T 3dzd_A 208 TGALTRKKGKLELADQGTLFLDEVGELDQR--------------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN 273 (368)
T ss_dssp SSCCCCEECHHHHTTTSEEEEETGGGSCHH--------------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC
T ss_pred CCcccccCChHhhcCCCeEEecChhhCCHH--------------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC
Confidence 11234466678999999999999998 999999999988777655555555689999999987
Q ss_pred cC
Q 012525 456 SK 457 (461)
Q Consensus 456 ~e 457 (461)
+.
T Consensus 274 l~ 275 (368)
T 3dzd_A 274 LE 275 (368)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 59
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.19 E-value=1.4e-10 Score=104.97 Aligned_cols=103 Identities=26% Similarity=0.373 Sum_probs=71.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-----
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l----- 349 (461)
++|++.+++.|...+.. ....++||+||+|||||++|+++++.+
T Consensus 19 ~~g~~~~~~~l~~~l~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 67 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVER-------------------------------KNIPHLLFSGPPGTGKTATAIALARDLFGENW 67 (226)
T ss_dssp CCSCHHHHHHHHHHHHT-------------------------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG
T ss_pred HcCcHHHHHHHHHHHhC-------------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc
Confidence 78999999988877731 012469999999999999999999876
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhch--hhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHH
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF--NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~--~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~ 427 (461)
...++.+++..... ...+...+..... ......+.||||||+|.+... .++.|+.+
T Consensus 68 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 68 RDNFIEMNASDERG--------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGEEEEETTCTTC--------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccceEEeccccccC--------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 34577777654332 1122222211111 122356789999999999876 67889998
Q ss_pred HhC
Q 012525 428 LEG 430 (461)
Q Consensus 428 LEg 430 (461)
|+.
T Consensus 126 l~~ 128 (226)
T 2chg_A 126 MEM 128 (226)
T ss_dssp HHH
T ss_pred HHh
Confidence 884
No 60
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.18 E-value=1.6e-11 Score=129.84 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHH
Q 012525 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (461)
Q Consensus 264 ~~el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAr 343 (461)
...+...+.. |+||+.+|+.|..++. + .... .....||||.|+||| ||+||+
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~-------------G--G~~k-----------~rgdihVLL~G~PGt-KS~Lar 256 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLF-------------S--CVGK-----------NSERLHVLLAGYPVV-CSEILH 256 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHT-------------T--CCSS-----------GGGCCCEEEESCHHH-HHHHHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHc-------------C--Cccc-----------cCCceeEEEECCCCh-HHHHHH
Confidence 4568888899 9999999998888772 0 0000 122358999999999 999999
Q ss_pred HH-HHhcCCceEEec-ch---hhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchH
Q 012525 344 TL-ARHVNVPFVIAD-AT---TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (461)
Q Consensus 344 aL-A~~l~~pfv~i~-~s---~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~ 418 (461)
++ ++.+....+... .+ .+... .... .. +....+.+..++++|+|||||+++.++
T Consensus 257 ~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~------tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~------------- 315 (506)
T 3f8t_A 257 HVLDHLAPRGVYVDLRRTELTDLTAV-LKED------RG-WALRAGAAVLADGGILAVDHLEGAPEP------------- 315 (506)
T ss_dssp HHHHHTCSSEEEEEGGGCCHHHHSEE-EEES------SS-EEEEECHHHHTTTSEEEEECCTTCCHH-------------
T ss_pred HHHHHhCCCeEEecCCCCCccCceEE-EEcC------CC-cccCCCeeEEcCCCeeehHhhhhCCHH-------------
Confidence 99 887754322211 11 12211 1000 11 223345566678999999999999998
Q ss_pred HHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCc
Q 012525 419 GVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 419 ~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
.+.+|++.||++++++. .. ..+.++.+|+|+|...
T Consensus 316 -~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 316 -HRWALMEAMDKGTVTVD-GI-ALNARCAVLAAINPGE 350 (506)
T ss_dssp -HHHHHHHHHHHSEEEET-TE-EEECCCEEEEEECCCC
T ss_pred -HHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEEeCccc
Confidence 99999999999998877 44 7777999999999764
No 61
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.17 E-value=4.6e-11 Score=129.16 Aligned_cols=57 Identities=25% Similarity=0.434 Sum_probs=45.0
Q ss_pred hhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc----------eeeecCCeEEEecCCC
Q 012525 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA----------VSKVSRDNLYIKTSGL 454 (461)
Q Consensus 385 ~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~----------~r~~~rd~IiI~TsNi 454 (461)
.+..+++++||||||+.|.+. +++.|++.|+...+.+... ....+.++++|+|+|.
T Consensus 196 ~~~~a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~ 261 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNL 261 (604)
T ss_dssp HHHHTTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECH
T ss_pred eeeecCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCH
Confidence 345578899999999999877 8999999999887765533 2344558999999997
Q ss_pred C
Q 012525 455 D 455 (461)
Q Consensus 455 d 455 (461)
+
T Consensus 262 ~ 262 (604)
T 3k1j_A 262 D 262 (604)
T ss_dssp H
T ss_pred H
Confidence 5
No 62
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=2.3e-10 Score=121.36 Aligned_cols=127 Identities=19% Similarity=0.188 Sum_probs=80.7
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ |+|++.+++.|...+..............+ ........++||+||||||||++|+++|+++
T Consensus 37 ~~~d-liG~~~~~~~L~~~l~~~~~~~~~~~~~~g--------------~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 37 NLQQ-VCGNKGSVMKLKNWLANWENSKKNSFKHAG--------------KDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHTHHHHHHTTTCCCC--------------TTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHH-hcCCHHHHHHHHHHHHHhHhhchhhccccC--------------ccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4555 899999999999888532211101111111 0000124689999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhh------chh--------hhccCceEEEEcCccccchhhhcccccccc
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQA------EFN--------VEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a------~~~--------v~~a~~gVLfIDEID~L~~~R~~~~~~~~~ 415 (461)
+.+++.++++++... ..+...+... ... .....+.||||||||.|.....
T Consensus 102 ~~~~i~in~s~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-------- 165 (516)
T 1sxj_A 102 GYDILEQNASDVRSK--------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-------- 165 (516)
T ss_dssp TCEEEEECTTSCCCH--------HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------
T ss_pred CCCEEEEeCCCcchH--------HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------
Confidence 999999999876532 1111111100 000 0124678999999999987521
Q ss_pred chHHHHHHHHHHHhC
Q 012525 416 SGEGVQQALLKMLEG 430 (461)
Q Consensus 416 s~~~v~~aLL~~LEg 430 (461)
+.+++|+++|+.
T Consensus 166 ---~~l~~L~~~l~~ 177 (516)
T 1sxj_A 166 ---GGVGQLAQFCRK 177 (516)
T ss_dssp ---THHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHh
Confidence 146788888874
No 63
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=3.4e-10 Score=103.37 Aligned_cols=112 Identities=27% Similarity=0.334 Sum_probs=70.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
++|++.+++.|...+.. + ..+..++|+||+|||||++|+.+++.+.....
T Consensus 25 ~~g~~~~~~~l~~~l~~------------~------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~ 74 (250)
T 1njg_A 25 VVGQEHVLTALANGLSL------------G------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 74 (250)
T ss_dssp CCSCHHHHHHHHHHHHH------------T------------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTC
T ss_pred HhCcHHHHHHHHHHHHc------------C------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 79999999988887731 0 01246899999999999999999987743211
Q ss_pred Ee--c------chhhhhc---Cc-----ccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchH
Q 012525 355 IA--D------ATTLTQA---GY-----VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (461)
Q Consensus 355 ~i--~------~s~l~~~---g~-----vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~ 418 (461)
.. . +..+... .+ ........+..++..........++.+|||||+|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~------------- 141 (250)
T 1njg_A 75 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH------------- 141 (250)
T ss_dssp SCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------
T ss_pred CCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------
Confidence 00 0 0000000 00 001113344555554332222346789999999998776
Q ss_pred HHHHHHHHHHhC
Q 012525 419 GVQQALLKMLEG 430 (461)
Q Consensus 419 ~v~~aLL~~LEg 430 (461)
.++.|+..|+.
T Consensus 142 -~~~~l~~~l~~ 152 (250)
T 1njg_A 142 -SFNALLKTLEE 152 (250)
T ss_dssp -HHHHHHHHHHS
T ss_pred -HHHHHHHHHhc
Confidence 78899999984
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=3.5e-10 Score=110.06 Aligned_cols=108 Identities=29% Similarity=0.375 Sum_probs=73.5
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+++ ++|++.+++.|...+.. ....++||+||+|||||++|+++|+.+.
T Consensus 24 ~~~-~~g~~~~~~~l~~~l~~-------------------------------~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 24 LDD-IVGQEHIVKRLKHYVKT-------------------------------GSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp TTT-CCSCHHHHHHHHHHHHH-------------------------------TCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHH-hhCCHHHHHHHHHHHHc-------------------------------CCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 444 89999999988877731 0124699999999999999999999863
Q ss_pred C-----ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHH
Q 012525 351 V-----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (461)
Q Consensus 351 ~-----pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL 425 (461)
. .++.+++++..... .....+..... ...+...+..||||||+|.+... .+++|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~vliiDe~~~l~~~--------------~~~~L~ 131 (327)
T 1iqp_A 72 GENWRHNFLELNASDERGIN----VIREKVKEFAR--TKPIGGASFKIIFLDEADALTQD--------------AQQALR 131 (327)
T ss_dssp GGGHHHHEEEEETTCHHHHH----TTHHHHHHHHH--SCCGGGCSCEEEEEETGGGSCHH--------------HHHHHH
T ss_pred CCcccCceEEeeccccCchH----HHHHHHHHHHh--hCCcCCCCCeEEEEeCCCcCCHH--------------HHHHHH
Confidence 2 46777766543210 11112222111 11122356789999999999877 789999
Q ss_pred HHHhC
Q 012525 426 KMLEG 430 (461)
Q Consensus 426 ~~LEg 430 (461)
+.|+.
T Consensus 132 ~~le~ 136 (327)
T 1iqp_A 132 RTMEM 136 (327)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99984
No 65
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=1.6e-10 Score=114.14 Aligned_cols=107 Identities=25% Similarity=0.358 Sum_probs=72.1
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+++ |+|++++++.|...+. . ....++||+||||||||++|+++|+.+.
T Consensus 36 ~~~-i~g~~~~~~~l~~~l~------------~-------------------~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 36 LDE-VTAQDHAVTVLKKTLK------------S-------------------ANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTT-CCSCCTTHHHHHHHTT------------C-------------------TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHH-hhCCHHHHHHHHHHHh------------c-------------------CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 8999999988877762 0 0124699999999999999999999864
Q ss_pred ------CceEEecchhhhhcCcccccHHHHHHHHHHhh-ch-----------hhhccCceEEEEcCccccchhhhccccc
Q 012525 351 ------VPFVIADATTLTQAGYVGEDVESILYKLLAQA-EF-----------NVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 351 ------~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a-~~-----------~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
..++.+++++.... ..++..+... .. ........||||||+|.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------- 148 (353)
T 1sxj_D 84 GPDLMKSRILELNASDERGI--------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------- 148 (353)
T ss_dssp HHHHHTTSEEEECSSSCCCH--------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------
T ss_pred CCcccccceEEEccccccch--------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------
Confidence 35777777654211 1111111110 00 011235579999999999887
Q ss_pred cccchHHHHHHHHHHHhCc
Q 012525 413 RDVSGEGVQQALLKMLEGT 431 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg~ 431 (461)
.+++|++.|+..
T Consensus 149 -------~~~~Ll~~le~~ 160 (353)
T 1sxj_D 149 -------AQSALRRTMETY 160 (353)
T ss_dssp -------HHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHhc
Confidence 789999999843
No 66
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.03 E-value=2e-10 Score=111.40 Aligned_cols=109 Identities=28% Similarity=0.379 Sum_probs=74.2
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ ++|++.+++.|...+.. ....++||+||+|||||++|+++|+.+
T Consensus 15 ~~~~-~~g~~~~~~~l~~~l~~-------------------------------~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 15 TLDE-VVGQDEVIQRLKGYVER-------------------------------KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SGGG-SCSCHHHHHHHHTTTTT-------------------------------TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHH-HhCCHHHHHHHHHHHhC-------------------------------CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3455 89999999988776620 012469999999999999999999986
Q ss_pred -----CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHH
Q 012525 350 -----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQAL 424 (461)
Q Consensus 350 -----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aL 424 (461)
..+++.+++++..... .....+...... ..+....+.||||||+|.+... .+++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~vliiDe~~~l~~~--------------~~~~L 122 (319)
T 2chq_A 63 FGENWRDNFIEMNASDERGID----VVRHKIKEFART--APIGGAPFKIIFLDEADALTAD--------------AQAAL 122 (319)
T ss_dssp HTTCHHHHCEEEETTSTTCTT----TSSHHHHHHHHS--CCSSSCCCEEEEEETGGGSCHH--------------HHHTT
T ss_pred cCCcccCCeEEEeCccccChH----HHHHHHHHHHhc--CCCCCCCceEEEEeCCCcCCHH--------------HHHHH
Confidence 3467888877643211 111222222211 1122246789999999999877 78899
Q ss_pred HHHHhC
Q 012525 425 LKMLEG 430 (461)
Q Consensus 425 L~~LEg 430 (461)
++.|+.
T Consensus 123 ~~~le~ 128 (319)
T 2chq_A 123 RRTMEM 128 (319)
T ss_dssp GGGTSS
T ss_pred HHHHHh
Confidence 999984
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.01 E-value=8.7e-10 Score=109.61 Aligned_cols=107 Identities=28% Similarity=0.369 Sum_probs=70.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+++ ++|++.+++.|...+.. + ..+..+||+||+|||||++|+++|+.+.
T Consensus 15 ~~~-~vg~~~~~~~L~~~l~~------------~------------------~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 15 FAD-VVGQEHVLTALANGLSL------------G------------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TTT-SCSCHHHHHHHHHHHHH------------T------------------CCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred hhh-ccCcHHHHHHHHHHHHh------------C------------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344 89999999988887731 0 0124589999999999999999999885
Q ss_pred Cc------------------------eEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhh
Q 012525 351 VP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (461)
Q Consensus 351 ~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R 406 (461)
.. ++.++... ..+ ...++.++...........+.||||||+|.+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~- 134 (373)
T 1jr3_A 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH- 134 (373)
T ss_dssp CTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCC---SSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-
T ss_pred CCCCCCCCCCcccHHHHHHhccCCCceEEecccc-----cCC---HHHHHHHHHHHhhccccCCeEEEEEECcchhcHH-
Confidence 42 12222111 001 1123344443332222345789999999999876
Q ss_pred hccccccccchHHHHHHHHHHHhC
Q 012525 407 ESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 407 ~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
.+++|++.|+.
T Consensus 135 -------------~~~~Ll~~le~ 145 (373)
T 1jr3_A 135 -------------SFNALLKTLEE 145 (373)
T ss_dssp -------------HHHHHHHHHHS
T ss_pred -------------HHHHHHHHHhc
Confidence 78999999985
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=6.8e-10 Score=107.81 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=72.7
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l- 349 (461)
+++ ++|++.+++.|...+.. ....++||+||+|||||++|+++++.+
T Consensus 20 ~~~-~~g~~~~~~~l~~~l~~-------------------------------~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 20 LSD-IVGNKETIDRLQQIAKD-------------------------------GNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp GGG-CCSCTHHHHHHHHHHHS-------------------------------CCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHH-HHCCHHHHHHHHHHHHc-------------------------------CCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 444 78999999988887620 012459999999999999999999986
Q ss_pred ----CCceEEecchhhhhcCcccccHHHHHHHHHHhhc---hhhhccCceEEEEcCccccchhhhccccccccchHHHHH
Q 012525 350 ----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAE---FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (461)
Q Consensus 350 ----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~---~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~ 422 (461)
...++.+++.+... ...++.++.... ..+...+..||||||+|.+... .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~ 125 (323)
T 1sxj_B 68 GRSYADGVLELNASDDRG--------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQ 125 (323)
T ss_dssp GGGHHHHEEEECTTSCCS--------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHH
T ss_pred CCcccCCEEEecCccccC--------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHH
Confidence 33567777654321 223333333211 1111234789999999999877 788
Q ss_pred HHHHHHhC
Q 012525 423 ALLKMLEG 430 (461)
Q Consensus 423 aLL~~LEg 430 (461)
+|++.|+.
T Consensus 126 ~L~~~le~ 133 (323)
T 1sxj_B 126 ALRRTMEL 133 (323)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHhc
Confidence 99999984
No 69
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=1.4e-09 Score=108.61 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=61.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc------CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l------~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEI 399 (461)
.++||+||+|+|||++|+++|+.+ ...|+.++++.. .. . ...++.++..+..........|+||||+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~--~-id~ir~li~~~~~~p~~~~~kvviIdea 91 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NI--G-IDDIRTIKDFLNYSPELYTRKYVIVHDC 91 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CB--C-HHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CC--C-HHHHHHHHHHHhhccccCCceEEEeccH
Confidence 579999999999999999999864 336666665421 11 1 3345566655544333346789999999
Q ss_pred cccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 400 D~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
|.|... .+++||+.||+
T Consensus 92 d~lt~~--------------a~naLLk~LEe 108 (305)
T 2gno_A 92 ERMTQQ--------------AANAFLKALEE 108 (305)
T ss_dssp GGBCHH--------------HHHHTHHHHHS
T ss_pred HHhCHH--------------HHHHHHHHHhC
Confidence 999987 89999999995
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=1.8e-09 Score=107.66 Aligned_cols=107 Identities=25% Similarity=0.362 Sum_probs=71.7
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ ++||+.+++.|...+.. + ...|++|+||+|||||++|+++|+.+
T Consensus 23 ~~~~-~~g~~~~~~~L~~~i~~------------g-------------------~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 23 TLDE-VYGQNEVITTVRKFVDE------------G-------------------KLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHT------------T-------------------CCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHH-hcCcHHHHHHHHHHHhc------------C-------------------CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4555 79999999988877730 1 11459999999999999999999987
Q ss_pred CC-----ceEEecchhhhhcCcccccHHHHHHHHHHhhc--hhhhccCceEEEEcCccccchhhhccccccccchHHHHH
Q 012525 350 NV-----PFVIADATTLTQAGYVGEDVESILYKLLAQAE--FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (461)
Q Consensus 350 ~~-----pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~--~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~ 422 (461)
.. .++.+++++.. + ...++..+.... .........|++|||+|.|... .++
T Consensus 71 ~~~~~~~~~~~~~~~~~~-----~---~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~ 128 (340)
T 1sxj_C 71 YGKNYSNMVLELNASDDR-----G---IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQN 128 (340)
T ss_dssp HTTSHHHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHH
T ss_pred cCCCccceEEEEcCcccc-----c---HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHH
Confidence 43 35555554321 1 122232222111 1111134679999999999877 789
Q ss_pred HHHHHHhC
Q 012525 423 ALLKMLEG 430 (461)
Q Consensus 423 aLL~~LEg 430 (461)
+|++.||.
T Consensus 129 ~L~~~le~ 136 (340)
T 1sxj_C 129 ALRRVIER 136 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999984
No 71
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.97 E-value=4.2e-10 Score=118.16 Aligned_cols=114 Identities=28% Similarity=0.366 Sum_probs=71.1
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l- 349 (461)
|++ |+|++..++.|...+.. ....|+||+||||||||++|++||+.+
T Consensus 179 ld~-iiGr~~~i~~l~~~l~r-------------------------------~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 179 LDP-VIGRSKEIQRVIEVLSR-------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC-------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCC-ccCcHHHHHHHHHHHhc-------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 454 89999999988777620 124689999999999999999999986
Q ss_pred ---------CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHH
Q 012525 350 ---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 350 ---------~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
+.+|+.+++. ..|.|+. +..+..++..+.. ..++||||| .... +
T Consensus 227 ~~~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~~----~~~~iLfiD----~~~~--------------a 279 (468)
T 3pxg_A 227 NNEVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIRQ----AGNIILFID----AAID--------------A 279 (468)
T ss_dssp SSCSCTTTSSCCEECC---------------CTTHHHHHHHHHT----CCCCEEEEC----C------------------
T ss_pred hCCCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHHh----cCCeEEEEe----Cchh--------------H
Confidence 6788888887 2344443 4455666655432 367899999 1111 6
Q ss_pred HHHHHHHHhCceeeeecceeeecCCeEEEecCCCCc
Q 012525 421 QQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 421 ~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
++.|+..|+.+ ++++|+++|.+.
T Consensus 280 ~~~L~~~L~~g-------------~v~vI~at~~~e 302 (468)
T 3pxg_A 280 SNILKPSLARG-------------ELQCIGATTLDE 302 (468)
T ss_dssp ----CCCTTSS-------------SCEEEEECCTTT
T ss_pred HHHHHHhhcCC-------------CEEEEecCCHHH
Confidence 77888888744 356677776654
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.96 E-value=1.1e-09 Score=109.25 Aligned_cols=63 Identities=22% Similarity=0.272 Sum_probs=49.3
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc---
Q 012525 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (461)
Q Consensus 273 ~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l--- 349 (461)
+.++|++..++.|...+..... . ..+.+++|+||+|||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~-------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------N-------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------T-------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------C-------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4489999999999887742110 0 113679999999999999999999987
Q ss_pred --------CCceEEecchhhh
Q 012525 350 --------NVPFVIADATTLT 362 (461)
Q Consensus 350 --------~~pfv~i~~s~l~ 362 (461)
+.+++.+++....
T Consensus 73 ~~~~~~~~~~~~~~i~~~~~~ 93 (384)
T 2qby_B 73 KKEDEEYKDVKQAYVNCREVG 93 (384)
T ss_dssp HHHSSSSTTCEEEEEEHHHHC
T ss_pred hhhhcCCCCceEEEEECccCC
Confidence 8899999987543
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.95 E-value=1.2e-09 Score=122.43 Aligned_cols=121 Identities=24% Similarity=0.338 Sum_probs=69.9
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ |+|++..++.+...+.. ....++||+||||||||++|++||+.+
T Consensus 168 ~ld~-viGr~~~i~~l~~~l~~-------------------------------~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 168 KLDP-VIGRDEEIRRVIQILLR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CSCC-CCSCHHHHHHHHHHHHC-------------------------------SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcc-cCCcHHHHHHHHHHHhc-------------------------------CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3444 79999888877776620 123679999999999999999999987
Q ss_pred ----------CCceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchH
Q 012525 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (461)
Q Consensus 350 ----------~~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~ 418 (461)
+.+++.+++..+.. ..+.|+. +..+..++..+... ..+.||||||+|.+....... ...
T Consensus 216 ~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~------g~~ 285 (854)
T 1qvr_A 216 VKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAE------GAV 285 (854)
T ss_dssp HHTCSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHTT---CSSEEEEECCC-------------------
T ss_pred hcCCCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCcc------chH
Confidence 77899999987763 2345543 66777777654421 256799999999998653221 112
Q ss_pred HHHHHHHHHHhCce
Q 012525 419 GVQQALLKMLEGTE 432 (461)
Q Consensus 419 ~v~~aLL~~LEg~~ 432 (461)
.+.+.|+.+|+...
T Consensus 286 ~~~~~L~~~l~~~~ 299 (854)
T 1qvr_A 286 DAGNMLKPALARGE 299 (854)
T ss_dssp ------HHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 26778888887543
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.95 E-value=1.5e-09 Score=119.65 Aligned_cols=121 Identities=26% Similarity=0.383 Sum_probs=82.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 269 ~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..+++ |+|++..++.+...+.. ..+.++||+||||||||++|++||+.
T Consensus 183 ~~~d~-~iGr~~~i~~l~~~l~~-------------------------------~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 183 GGIDP-LIGREKELERAIQVLCR-------------------------------RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp TCSCC-CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCC-ccCCHHHHHHHHHHHhc-------------------------------cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 34555 89999998887776620 12478999999999999999999987
Q ss_pred c----------CCceEEecchhhhh-cCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccch
Q 012525 349 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (461)
Q Consensus 349 l----------~~pfv~i~~s~l~~-~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~ 417 (461)
+ +..++.++...+.. ..+.|. .+..++.++..... ..++||||||+|.+...+... .+.
T Consensus 231 l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~-~e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~-----~~~ 300 (758)
T 1r6b_X 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD-FEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAAS-----GGQ 300 (758)
T ss_dssp HHHTCSCGGGTTCEEEECCCC---CCCCCSSC-HHHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSS-----SCH
T ss_pred HHhCCCChhhcCCEEEEEcHHHHhccccccch-HHHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCCC-----cch
Confidence 7 55677777776653 234554 47777887765543 367899999999997653211 112
Q ss_pred HHHHHHHHHHHhCc
Q 012525 418 EGVQQALLKMLEGT 431 (461)
Q Consensus 418 ~~v~~aLL~~LEg~ 431 (461)
..+.+.|..+|+..
T Consensus 301 ~~~~~~L~~~l~~~ 314 (758)
T 1r6b_X 301 VDAANLIKPLLSSG 314 (758)
T ss_dssp HHHHHHHSSCSSSC
T ss_pred HHHHHHHHHHHhCC
Confidence 23566666666643
No 75
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.92 E-value=3.2e-09 Score=105.22 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=66.7
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc----
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---- 349 (461)
.++|++..++.|...+.. ... .....+++|+||||||||++|+++++.+
T Consensus 20 ~~~gr~~~~~~l~~~l~~--------~~~-------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~ 72 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAP--------ALR-------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEARA 72 (387)
T ss_dssp CCTTCHHHHHHHHHTTGG--------GTS-------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--------HHc-------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 479999998888776621 000 1224789999999999999999999988
Q ss_pred -----CCceEEecchhhhhc---------------CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 350 -----NVPFVIADATTLTQA---------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 350 -----~~pfv~i~~s~l~~~---------------g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
+.+++.+++...... ...+......+..++.... ...++.||||||+|.+...
T Consensus 73 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 73 SSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp HHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHS
T ss_pred hccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhccc
Confidence 788899987653311 0112222333333333221 1224669999999998765
No 76
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.90 E-value=1.8e-09 Score=106.74 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=56.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
..+++|+||||||||+||+++++.+ +.+++.+++.++... +.... .......|... ...+.|||||||+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~-~~~~~-~~~~~~~~~~~-----~~~~~vL~iDEi~~ 109 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-MVEHL-KKGTINEFRNM-----YKSVDLLLLDDVQF 109 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHHHH-HHTCHHHHHHH-----HHTCSEEEEECGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHH-HcCcHHHHHHH-----hcCCCEEEEcCccc
Confidence 3679999999999999999999988 889999998876531 11110 00000111111 12467999999999
Q ss_pred cchhhhccccccccchHHHHHHHHHHHh
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+..++. .++.|+..|+
T Consensus 110 l~~~~~------------~~~~l~~~l~ 125 (324)
T 1l8q_A 110 LSGKER------------TQIEFFHIFN 125 (324)
T ss_dssp GTTCHH------------HHHHHHHHHH
T ss_pred ccCChH------------HHHHHHHHHH
Confidence 886421 4666666655
No 77
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.88 E-value=1.2e-08 Score=102.13 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=59.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc------------------------eEEecchhhhhcCcccccHHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQ 381 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p------------------------fv~i~~s~l~~~g~vGe~~e~~L~~lf~~ 381 (461)
+.+||+||+|||||++|+++|+.+... ++.++...- .. ... .+.++.++..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~--~~~-i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KN--TLG-VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CS--SBC-HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CC--CCC-HHHHHHHHHH
Confidence 459999999999999999999987643 222222100 00 012 3445666655
Q ss_pred hchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhC
Q 012525 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 382 a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
...........|+||||+|.|... .+++||+.||+
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe 134 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE 134 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC
Confidence 543333456789999999999887 78999999995
No 78
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.88 E-value=5e-09 Score=105.54 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=53.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc----------CCceEEecchhhhhc---------Ccccc-----cHHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLA 380 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l----------~~pfv~i~~s~l~~~---------g~vGe-----~~e~~L~~lf~ 380 (461)
+.+++|+||||||||++++.+++++ ...++.++|..+... .+.|+ .....+..+|.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 4789999999999999999999988 346788998764421 01111 12445666665
Q ss_pred hhchhhhccCceEEEEcCccccc
Q 012525 381 QAEFNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 381 ~a~~~v~~a~~gVLfIDEID~L~ 403 (461)
.... ......||||||||.|.
T Consensus 125 ~~~~--~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 125 NVPK--AKKRKTLILIQNPENLL 145 (318)
T ss_dssp HSCG--GGSCEEEEEEECCSSSC
T ss_pred Hhhh--ccCCceEEEEecHHHhh
Confidence 4311 12356799999999998
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.86 E-value=7.4e-09 Score=103.58 Aligned_cols=108 Identities=31% Similarity=0.497 Sum_probs=73.2
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.|++ ++|++.+++.|...+.....+ + ....+++|+|||||||||||++||..+
T Consensus 23 ~l~~-~~g~~~~~~~l~~~i~~~~~~--------~------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 23 SLDE-FIGQENVKKKLSLALEAAKMR--------G------------------EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHHHHHH--------T------------------CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cHHH-ccCcHHHHHHHHHHHHHHHhc--------C------------------CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4555 689999988888777321100 0 113679999999999999999999999
Q ss_pred CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHh
Q 012525 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 350 ~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+.++...+...+.. ...+..++.. .....|+||||++.+... +++.|+..|+
T Consensus 76 ~~~~~~~sg~~~~~--------~~~l~~~~~~------~~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~ 127 (334)
T 1in4_A 76 QTNIHVTSGPVLVK--------QGDMAAILTS------LERGDVLFIDEIHRLNKA--------------VEELLYSAIE 127 (334)
T ss_dssp TCCEEEEETTTCCS--------HHHHHHHHHH------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCEEEEechHhcC--------HHHHHHHHHH------ccCCCEEEEcchhhcCHH--------------HHHHHHHHHH
Confidence 98876655543321 1222222221 124569999999998865 6778888887
Q ss_pred Cce
Q 012525 430 GTE 432 (461)
Q Consensus 430 g~~ 432 (461)
...
T Consensus 128 ~~~ 130 (334)
T 1in4_A 128 DFQ 130 (334)
T ss_dssp TSC
T ss_pred hcc
Confidence 543
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.86 E-value=1.1e-08 Score=92.54 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=60.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc----CCceEEecchhhhhcCcccccHHHHHHHHHHhhch---hhhccCceEEEEc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF---NVEAAQQGMVYID 397 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~---~v~~a~~gVLfID 397 (461)
+.+++|+||+|||||||+++|+..+ +..++.++..++... +...+..... .-...++.+||||
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~llilD 107 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR----------LKHLMDEGKDTKFLKTVLNSPVLVLD 107 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH----------HHHHHHHTCCSHHHHHHHTCSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH----------HHHHhcCchHHHHHHHhcCCCEEEEe
Confidence 4779999999999999999999877 455666666555421 1111110000 0001256799999
Q ss_pred CccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcCc
Q 012525 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSKT 458 (461)
Q Consensus 398 EID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e~ 458 (461)
|++..... ...+..|+.+|+... .....+|.|||...+.
T Consensus 108 E~~~~~~~------------~~~~~~l~~ll~~~~----------~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 108 DLGSERLS------------DWQRELISYIITYRY----------NNLKSTIITTNYSLQR 146 (180)
T ss_dssp TCSSSCCC------------HHHHHHHHHHHHHHH----------HTTCEEEEECCCCSCC
T ss_pred CCCCCcCC------------HHHHHHHHHHHHHHH----------HcCCCEEEEcCCChhH
Confidence 99843221 014556666665221 1234677788877654
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.86 E-value=2e-09 Score=118.90 Aligned_cols=114 Identities=28% Similarity=0.367 Sum_probs=72.1
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc-
Q 012525 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (461)
Q Consensus 271 Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l- 349 (461)
+++ |+|++..++.|...+.. ....|+||+||||||||++|++||+.+
T Consensus 179 ld~-iiG~~~~i~~l~~~l~~-------------------------------~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 179 LDP-VIGRSKEIQRVIEVLSR-------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC-------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCC-ccCchHHHHHHHHHHhC-------------------------------CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 444 89999999988877720 124789999999999999999999987
Q ss_pred ---------CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHH
Q 012525 350 ---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (461)
Q Consensus 350 ---------~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v 420 (461)
+..++.+++ ...|.|+. +..++.+|..+.. ..++||||| .... +
T Consensus 227 ~~~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~~----~~~~iLfiD----~~~~--------------~ 279 (758)
T 3pxi_A 227 NNEVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIRQ----AGNIILFID----AAID--------------A 279 (758)
T ss_dssp SSCSCTTTSSCCEECC---------------CTTHHHHHHHHHT----CCCCEEEEC----C------------------
T ss_pred cCCCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHHh----cCCEEEEEc----Cchh--------------H
Confidence 677887777 23355543 5566777765543 478899999 1111 6
Q ss_pred HHHHHHHHhCceeeeecceeeecCCeEEEecCCCCc
Q 012525 421 QQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 421 ~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~ 456 (461)
++.|+..|+.. ++++|+++|...
T Consensus 280 ~~~L~~~l~~~-------------~v~~I~at~~~~ 302 (758)
T 3pxi_A 280 SNILKPSLARG-------------ELQCIGATTLDE 302 (758)
T ss_dssp ----CCCTTSS-------------SCEEEEECCTTT
T ss_pred HHHHHHHHhcC-------------CEEEEeCCChHH
Confidence 77888888743 356666666554
No 82
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.85 E-value=9.2e-09 Score=107.23 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=56.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-----CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
.+++|+||||||||+||++|++.+ +.+++.+++..+... +.... .......|.... ...+.|||||||+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~-~~~~~-~~~~~~~~~~~~----~~~~~vL~IDEi~ 204 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSM-KEGKLNEFREKY----RKKVDILLIDDVQ 204 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH-HHHHH-HTTCHHHHHHHH----TTTCSEEEEECGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHH-HcccHHHHHHHh----cCCCCEEEEeCcc
Confidence 679999999999999999999988 788899888776421 11000 000000111110 1156799999999
Q ss_pred ccchhhhccccccccchHHHHHHHHHHHh
Q 012525 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 401 ~L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
.+..++. .++.|+..|+
T Consensus 205 ~l~~~~~------------~q~~l~~~l~ 221 (440)
T 2z4s_A 205 FLIGKTG------------VQTELFHTFN 221 (440)
T ss_dssp GGSSCHH------------HHHHHHHHHH
T ss_pred cccCChH------------HHHHHHHHHH
Confidence 9886411 5667777765
No 83
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=1.4e-08 Score=101.13 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=73.0
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCC--cEEEEccCCCchHHHHHHHHHhc--
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKS--NVLLMGPTGSGKTLLAKTLARHV-- 349 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~--~VLL~GPPGTGKTtLAraLA~~l-- 349 (461)
.++|++..++.|...+..... . ..+. +++|+||+|||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~----~-----------------------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLR----N-----------------------PGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH----S-----------------------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHHHHc----C-----------------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 389999999998887742111 0 0123 79999999999999999999988
Q ss_pred --CCceEEecchhhhhc-----------C----cccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc
Q 012525 350 --NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 350 --~~pfv~i~~s~l~~~-----------g----~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
+..++.+++...... + ..+......+..+..... ....+.||||||++.+...
T Consensus 71 ~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~------- 140 (389)
T 1fnn_A 71 KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR---ERDLYMFLVLDDAFNLAPD------- 140 (389)
T ss_dssp SCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HTTCCEEEEEETGGGSCHH-------
T ss_pred hcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh---hcCCeEEEEEECccccchH-------
Confidence 567888887543310 0 011122222222221111 1134679999999998554
Q ss_pred cccchHHHHHHHHHHHhC
Q 012525 413 RDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg 430 (461)
.+..|+..++.
T Consensus 141 -------~~~~L~~~~~~ 151 (389)
T 1fnn_A 141 -------ILSTFIRLGQE 151 (389)
T ss_dssp -------HHHHHHHHTTC
T ss_pred -------HHHHHHHHHHh
Confidence 78899888874
No 84
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=1.6e-08 Score=100.22 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=36.4
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 270 ~Ld~~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++ ++|++.+++.|...+. .. ....+++|+||+||||||++++||+.+
T Consensus 12 ~~~~-~vg~~~~~~~l~~~~~-----------~~-------------------~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 12 SLNA-LSHNEELTNFLKSLSD-----------QP-------------------RDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp SGGG-CCSCHHHHHHHHTTTT-----------CT-------------------TCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHH-hcCCHHHHHHHHHHHh-----------hC-------------------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3555 7899998887766551 00 012459999999999999999999964
No 85
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.77 E-value=2.6e-08 Score=92.01 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=54.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
..+++|+||||||||++|+++++.+. .+++.+++.++... + . .. +. ....+.||||||++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-~----~~----~~------~~~~~~vliiDe~~~ 115 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-T----AL----LE------GLEQFDLICIDDVDA 115 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-G----GG----GT------TGGGSSEEEEETGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-H----HH----HH------hccCCCEEEEecccc
Confidence 37899999999999999999998774 67788888776632 1 0 00 00 013567999999998
Q ss_pred cchhhhccccccccchHHHHHHHHHHHh
Q 012525 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (461)
Q Consensus 402 L~~~R~~~~~~~~~s~~~v~~aLL~~LE 429 (461)
+..... .++.|+.+|+
T Consensus 116 ~~~~~~------------~~~~l~~~l~ 131 (242)
T 3bos_A 116 VAGHPL------------WEEAIFDLYN 131 (242)
T ss_dssp GTTCHH------------HHHHHHHHHH
T ss_pred ccCCHH------------HHHHHHHHHH
Confidence 876511 3666777765
No 86
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.77 E-value=2.1e-08 Score=99.16 Aligned_cols=117 Identities=17% Similarity=0.289 Sum_probs=74.5
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhc----
Q 012525 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l---- 349 (461)
.++|++...+.|...+... .. .....+++|+||+|||||+|++++++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~--------~~-------------------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPL--------YR-------------------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGG--------GG-------------------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHH--------Hc-------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 3799999988887766210 00 0124679999999999999999999988
Q ss_pred --CCceEEecchhhhhc---------------CcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchhhhccccc
Q 012525 350 --NVPFVIADATTLTQA---------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (461)
Q Consensus 350 --~~pfv~i~~s~l~~~---------------g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~ 412 (461)
+.+++.+++...... ...+......+..++..... ...+.||||||++.+.....
T Consensus 74 ~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~----- 145 (386)
T 2qby_A 74 LGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYN----- 145 (386)
T ss_dssp CSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSC-----
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCc-----
Confidence 788888887643210 01122223333333322211 12377999999999875410
Q ss_pred cccchHHHHHHHHHHHhC
Q 012525 413 RDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 413 ~~~s~~~v~~aLL~~LEg 430 (461)
..++..|+..++.
T Consensus 146 -----~~~l~~l~~~~~~ 158 (386)
T 2qby_A 146 -----DDILYKLSRINSE 158 (386)
T ss_dssp -----STHHHHHHHHHHS
T ss_pred -----CHHHHHHhhchhh
Confidence 0167788888863
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.60 E-value=1.5e-08 Score=92.86 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=31.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~ 362 (461)
.+++|+||+|||||+||++|++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 679999999999999999999977 5677777777654
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.60 E-value=5e-08 Score=87.16 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=45.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~ 401 (461)
...++|+||+|+|||+|+++++..+ +..++.++..++... . + ..+..+|+|||++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----~--------~--------~~~~~lLilDE~~~ 94 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----D--------A--------AFEAEYLAVDQVEK 94 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----G--------G--------GGGCSEEEEESTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----H--------H--------HhCCCEEEEeCccc
Confidence 4679999999999999999999977 556777777665531 0 0 12456999999998
Q ss_pred cchh
Q 012525 402 ITKK 405 (461)
Q Consensus 402 L~~~ 405 (461)
+...
T Consensus 95 ~~~~ 98 (149)
T 2kjq_A 95 LGNE 98 (149)
T ss_dssp CCSH
T ss_pred cChH
Confidence 7665
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.42 E-value=1.5e-07 Score=89.82 Aligned_cols=99 Identities=10% Similarity=0.168 Sum_probs=58.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~~ 405 (461)
.++||+||||||||++|.+||+.+...++.+..+. ..+. +.. .....||+|||++.-.-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f~-----------l~~------l~~~kIiiLDEad~~~~- 117 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHFW-----------LEP------LTDTKVAMLDDATTTCW- 117 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCGG-----------GGG------GTTCSSEEEEEECHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chhh-----------hcc------cCCCCEEEEECCCchhH-
Confidence 57999999999999999999999865433221110 0000 000 01234899999994321
Q ss_pred hhccccccccchHHHHHHHHHHHhCceeeeecceee--ecCCeEEEecCCCCcC
Q 012525 406 AESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSK--VSRDNLYIKTSGLDSK 457 (461)
Q Consensus 406 R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~--~~rd~IiI~TsNid~e 457 (461)
+.+...+..+|||..+.+...-+. .....-+|.|||++..
T Consensus 118 ------------~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~ 159 (212)
T 1tue_A 118 ------------TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA 159 (212)
T ss_dssp ------------HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT
T ss_pred ------------HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcc
Confidence 124567888999986665433111 1123467788888654
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.42 E-value=5.4e-07 Score=107.44 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHh---------hhccCCCCCchhhhhccccc--cccccCCcEEEEccC
Q 012525 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHA---------NLKKGSGAEPKTAAAVDNDD--NVELEKSNVLLMGPT 334 (461)
Q Consensus 266 el~~~Ld~~VvGqd~aK~~L~~al~~~~kri~~~---------~~~~g~~~s~~~~~~~~~~~--~~~~~~~~VLL~GPP 334 (461)
+....|++ |-|.+++|+.+.+++....+.-+.. ....-...+..+..+ |.+. .-.+..+.+||+|||
T Consensus 1014 ~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~gl-D~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1014 ASGSSTGS-MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSL-DIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHH-HHHTSSSSEETTSEEEEECST
T ss_pred cCCceeee-cCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhH-HHHhccCCCCCCCEEEEEcCC
Confidence 33455555 7899999999988887554321110 000000000001000 0111 112334569999999
Q ss_pred CCchHHHHHHHHHhc---CCceEEecchh----hhh-------cCcccc---cHHHHHHHHHHhhchhhhccCceEEEEc
Q 012525 335 GSGKTLLAKTLARHV---NVPFVIADATT----LTQ-------AGYVGE---DVESILYKLLAQAEFNVEAAQQGMVYID 397 (461)
Q Consensus 335 GTGKTtLAraLA~~l---~~pfv~i~~s~----l~~-------~g~vGe---~~e~~L~~lf~~a~~~v~~a~~gVLfID 397 (461)
|||||+||++++.+. +.+.+.++... +.. ..|+++ .-|..++.++..++. ..+++||+|
T Consensus 1092 g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~----~~~~~i~~d 1167 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS----GAVDVIVVD 1167 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH----TCCSEEEES
T ss_pred CCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh----cCCeEEEeC
Confidence 999999999999766 34544444433 221 235555 136777777765543 368899999
Q ss_pred Cccccchhhhcc-cccc-c-cchHHHHHHHHHHHhC
Q 012525 398 EVDKITKKAESL-NISR-D-VSGEGVQQALLKMLEG 430 (461)
Q Consensus 398 EID~L~~~R~~~-~~~~-~-~s~~~v~~aLL~~LEg 430 (461)
||++|.+.++.. +.+. + .-..++++++|..|++
T Consensus 1168 ~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1168 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp CGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred chHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 999999986521 1111 1 2234467888888875
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.37 E-value=3.5e-08 Score=98.18 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=31.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC----CceEEecchhhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTLT 362 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~----~pfv~i~~s~l~ 362 (461)
..+++|+||||||||+||++||+.+. .+++.+.+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 36899999999999999999998664 677777776554
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.35 E-value=7.4e-07 Score=110.23 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCcEEEEccCCCchHHHH-HHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhh-c------hhh----hccCce
Q 012525 325 KSNVLLMGPTGSGKTLLA-KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA-E------FNV----EAAQQG 392 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLA-raLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a-~------~~v----~~a~~g 392 (461)
.++|||+||||||||++| +++++..+..++.++++..+.. ..+...+... . +.+ ...+..
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 378999999999999999 5555555677888887766532 2233333221 1 101 123457
Q ss_pred EEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc-eeeecCCeEEEecCCCC
Q 012525 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA-VSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 393 VLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r~~~rd~IiI~TsNid 455 (461)
||||||||....++- +....+..|.++||.+.+..... ......++.+|+|+|..
T Consensus 1339 VlFiDEinmp~~d~y--------g~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp 1394 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKY--------GSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPP 1394 (2695)
T ss_dssp EEEEETTTCSCCCSS--------SCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCT
T ss_pred EEEeccccccccccc--------CchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCC
Confidence 999999996443321 11126788888999554443322 22222478999999975
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.26 E-value=1.9e-06 Score=106.58 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
..++++.||+|||||++++.||+.++.+++.++|++-.. ...+..+|..+.. .+..++||||+++..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld--------~~~lg~~~~g~~~-----~Gaw~~~DE~nr~~~ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD--------YQVLSRLLVGITQ-----IGAWGCFDEFNRLDE 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC--------HHHHHHHHHHHHH-----HTCEEEEETTTSSCH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC--------hhHhhHHHHHHHh-----cCCEeeehhhhhcCh
Confidence 567899999999999999999999999999999997653 2333444433221 356999999999888
Q ss_pred hhhccccccccchHHHHHHH-------HHHHhCceeeeecc--eeeecCCeEEEecCCCCc
Q 012525 405 KAESLNISRDVSGEGVQQAL-------LKMLEGTETKTFAA--VSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aL-------L~~LEg~~v~i~~~--~r~~~rd~IiI~TsNid~ 456 (461)
+ +++.| +..|......+... ......++.++.|.|.+.
T Consensus 712 e--------------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy 758 (2695)
T 4akg_A 712 K--------------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGY 758 (2695)
T ss_dssp H--------------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCS
T ss_pred H--------------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCc
Confidence 7 55554 44444444333333 333334789999999763
No 94
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.24 E-value=1.8e-06 Score=85.07 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=56.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
..+|+|+||||||||++|++||+.+.. +-.++... ..+. +.. ....-|+++||.. +..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~---~~f~-----------l~~------~~~k~i~l~Ee~~-~~~ 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---ENFP-----------FND------CVDKMVIWWEEGK-MTA 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---SSCT-----------TGG------GSSCSEEEECSCC-EET
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc---cccc-----------ccc------ccccEEEEecccc-chh
Confidence 356999999999999999999997644 22232211 1110 110 1133466666666 444
Q ss_pred hhhccccccccchHHHHHHHHHHHhCceeeeeccee--eecCCeEEEecCCCCcC
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVS--KVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r--~~~rd~IiI~TsNid~e 457 (461)
. +++.|..+|+|..+.+....+ ......-+|.|+|.+..
T Consensus 162 d--------------~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~ 202 (267)
T 1u0j_A 162 K--------------VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMC 202 (267)
T ss_dssp T--------------THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTT
T ss_pred H--------------HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcc
Confidence 4 567888899988777654422 11124566778887543
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.10 E-value=6.4e-06 Score=82.56 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=42.5
Q ss_pred hcCChHHHHHHHHHHH-HHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEE--EccCCCchHHHHHHHHHhc-
Q 012525 274 FVIGQEKAKKVLSVAV-YNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLL--MGPTGSGKTLLAKTLARHV- 349 (461)
Q Consensus 274 ~VvGqd~aK~~L~~al-~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL--~GPPGTGKTtLAraLA~~l- 349 (461)
.++|++...+.|...+ ..... . ......+++| +||+|||||+|++.+++.+
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~-------~------------------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLS-------G------------------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHT-------S------------------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhHHHhc-------C------------------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3789998888887766 31100 0 0011357889 9999999999999999876
Q ss_pred --------CCceEEecch
Q 012525 350 --------NVPFVIADAT 359 (461)
Q Consensus 350 --------~~pfv~i~~s 359 (461)
+..++.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 78 EAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp HHHHHTTCCEEEEEEEGG
T ss_pred HHHhccCCceeEEEEECC
Confidence 4466777763
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.05 E-value=3.1e-05 Score=75.33 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=40.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
++|+++..+.|...+.. ...++|+||+|+|||+|++.+++.++ ++
T Consensus 14 ~~gR~~el~~L~~~l~~---------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~ 58 (350)
T 2qen_A 14 IFDREEESRKLEESLEN---------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP--GI 58 (350)
T ss_dssp SCSCHHHHHHHHHHHHH---------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--EE
T ss_pred cCChHHHHHHHHHHHhc---------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--cE
Confidence 78999988888777620 14689999999999999999999875 55
Q ss_pred Eecchh
Q 012525 355 IADATT 360 (461)
Q Consensus 355 ~i~~s~ 360 (461)
.+++..
T Consensus 59 ~~~~~~ 64 (350)
T 2qen_A 59 LIDCRE 64 (350)
T ss_dssp EEEHHH
T ss_pred EEEeec
Confidence 565543
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.02 E-value=1.3e-05 Score=81.05 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC--ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcccc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~--pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L 402 (461)
...++|+||||||||+||..+|...+. .|+.+...+.... +. ...+..+..++.... . .. +||||||+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~-~~-~~le~~l~~i~~~l~----~-~~-LLVIDsI~aL 194 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG-YN-TDFNVFVDDIARAML----Q-HR-VIVIDSLKNV 194 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTT-CB-CCHHHHHHHHHHHHH----H-CS-EEEEECCTTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhh-hh-cCHHHHHHHHHHHHh----h-CC-EEEEeccccc
Confidence 455799999999999999999986543 3555522222211 11 333555544443322 2 22 9999999998
Q ss_pred chhh
Q 012525 403 TKKA 406 (461)
Q Consensus 403 ~~~R 406 (461)
....
T Consensus 195 ~~~~ 198 (331)
T 2vhj_A 195 IGAA 198 (331)
T ss_dssp C---
T ss_pred cccc
Confidence 6653
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.78 E-value=4.7e-05 Score=74.12 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=29.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~ 360 (461)
..++|+||+|+|||+|++.+++.+...++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 36899999999999999999998876667776654
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.76 E-value=8.1e-05 Score=93.29 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=71.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCccccch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID~L~~ 404 (461)
..+..+.||+|||||.+++.||+.++.+++.++|.+-.+ ...+..+|..+. ..+...+||||+++..
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d--------~~~~g~i~~G~~-----~~GaW~cfDEfNrl~~ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD--------LQAMSRIFVGLC-----QCGAWGCFDEFNRLEE 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC--------HHHHHHHHHHHH-----HHTCEEEEETTTSSCH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC--------HHHHHHHHhhHh-----hcCcEEEehhhhcCCH
Confidence 456689999999999999999999999999999987553 223333443222 1356789999999988
Q ss_pred hhhccccccccchHHHHHHHHHHHh---------Cceeeee-cceeeecCCeEEEecCCCCc
Q 012525 405 KAESLNISRDVSGEGVQQALLKMLE---------GTETKTF-AAVSKVSRDNLYIKTSGLDS 456 (461)
Q Consensus 405 ~R~~~~~~~~~s~~~v~~aLL~~LE---------g~~v~i~-~~~r~~~rd~IiI~TsNid~ 456 (461)
+ +++.+.+.|. ...+... ...-.....+.++.|.|.+.
T Consensus 671 ~--------------vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY 718 (3245)
T 3vkg_A 671 R--------------ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGY 718 (3245)
T ss_dssp H--------------HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCG
T ss_pred H--------------HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCc
Confidence 7 5555554443 2233332 22223334789999999764
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.73 E-value=4.4e-05 Score=95.59 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=71.4
Q ss_pred CCcEEEEccCCCchHHHHHH-HHHhcCCceEEecchhhhhcCcccccHHHHHHHHHHh----hc----hhhhc----cCc
Q 012525 325 KSNVLLMGPTGSGKTLLAKT-LARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQ----AE----FNVEA----AQQ 391 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAra-LA~~l~~pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~----a~----~~v~~----a~~ 391 (461)
..+|||+||||||||++++. +++..+.+++.++++..+.. ..+...+.. .. +.+-. .+.
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 37899999999999977654 55554667788888766542 233333321 11 11111 334
Q ss_pred eEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecc-eeeecCCeEEEecCCCC
Q 012525 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAA-VSKVSRDNLYIKTSGLD 455 (461)
Q Consensus 392 gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~-~r~~~rd~IiI~TsNid 455 (461)
.|||||||+.-..+.- +...+...|.++||.+.+.+... ......++.+|+|.|..
T Consensus 1376 ~VlFiDDiNmp~~D~y--------GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKY--------GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp EEEEETTTTCCCCCTT--------SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCT
T ss_pred EEEEecccCCCCcccc--------ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCC
Confidence 6999999996443311 11127788889999655555433 33333589999999864
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.57 E-value=5.5e-05 Score=67.30 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=30.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..|+|+|+||+||||+|++|++.++.+|+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4689999999999999999999999888876554
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.57 E-value=6.7e-05 Score=90.86 Aligned_cols=80 Identities=25% Similarity=0.237 Sum_probs=49.2
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhh---cCccc-----------ccHHHHHHHHHHhhchh
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ---AGYVG-----------EDVESILYKLLAQAEFN 385 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~---~g~vG-----------e~~e~~L~~lf~~a~~~ 385 (461)
..+.+++|+||||||||+||.+++.+. +...+.++...... ....| ...+..+..++. .
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~----l 1500 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA----L 1500 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH----H
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH----H
Confidence 457899999999999999999998754 33445555442210 00112 112333333322 2
Q ss_pred hhccCceEEEEcCccccchhh
Q 012525 386 VEAAQQGMVYIDEVDKITKKA 406 (461)
Q Consensus 386 v~~a~~gVLfIDEID~L~~~R 406 (461)
+......+|||||++.+.+.+
T Consensus 1501 vr~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCCHH
T ss_pred HhcCCCCEEEEcChhHhcccc
Confidence 233467899999999888753
No 103
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.53 E-value=5.3e-05 Score=67.94 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..|+|+|++|+||||+|+.||+.++.+|+..+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~ 39 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKE 39 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 5799999999999999999999999998876543
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.52 E-value=0.00031 Score=64.30 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.4
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCce
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
.+.|.||+|+|||||++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876443
No 105
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=9.3e-05 Score=67.84 Aligned_cols=34 Identities=44% Similarity=0.675 Sum_probs=30.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
...|+|.|++|+||||+++.||+.++.+|+..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 4679999999999999999999999999886654
No 106
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.38 E-value=0.0001 Score=65.31 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=30.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.+|+|.|++|+||||+|+.||+.++.+|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~ 40 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDM 40 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 579999999999999999999999999987654
No 107
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.36 E-value=0.0001 Score=65.76 Aligned_cols=32 Identities=38% Similarity=0.687 Sum_probs=28.7
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|+|.|+||+||||+|+.||+.++.+|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~ 37 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDF 37 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccH
Confidence 58999999999999999999999998876543
No 108
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.35 E-value=0.00013 Score=64.01 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=28.7
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|+|.|++|+||||+|+.|++.++.+|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 48899999999999999999999998876654
No 109
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.34 E-value=0.00057 Score=71.02 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+++|.|++|||||+++.++++.+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999876
No 110
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.31 E-value=0.00014 Score=65.15 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=29.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
..|+|+|+||+||||+|+.||+.++.+++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence 358999999999999999999999999876654
No 111
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.29 E-value=0.00036 Score=61.60 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH-hcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR-HVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~-~l~~pfv~i 356 (461)
..|+|.|+||+||||+|+.|++ .++..++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecH
Confidence 3589999999999999999999 566555443
No 112
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.28 E-value=0.00016 Score=64.74 Aligned_cols=34 Identities=35% Similarity=0.553 Sum_probs=30.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
...|+|+|+||+||||+++.|++.++.+++..+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~ 44 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGD 44 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHH
Confidence 4679999999999999999999999988876654
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.25 E-value=0.00018 Score=63.65 Aligned_cols=32 Identities=38% Similarity=0.784 Sum_probs=27.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|+|+|++|+||||+++.||..++.+++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d 36 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEecc
Confidence 56899999999999999999999988766543
No 114
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.22 E-value=0.00021 Score=66.87 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=43.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc--------C-CceEEecchhhhhcCcc----------cccHHH-HHHHHHHhhchh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV--------N-VPFVIADATTLTQAGYV----------GEDVES-ILYKLLAQAEFN 385 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l--------~-~pfv~i~~s~l~~~g~v----------Ge~~e~-~L~~lf~~a~~~ 385 (461)
..+|++|+||||||++|..++... + .+++..+..++.-. +. ....+. ....++..+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-- 82 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIP-HTYIETDAKKLPKSTDEQLSAHDMYEWIK-- 82 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSC-CEEEECCTTTCSSCCSSCEEGGGHHHHTT--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccc-ccccchhhhhccccCcccccHHHHHHHhh--
Confidence 457999999999999998875432 3 56655555544321 11 000000 0011121110
Q ss_pred hhccCceEEEEcCccccchhh
Q 012525 386 VEAAQQGMVYIDEVDKITKKA 406 (461)
Q Consensus 386 v~~a~~gVLfIDEID~L~~~R 406 (461)
....++.||||||++.+.+.+
T Consensus 83 ~~~~~~~vliIDEAq~l~~~~ 103 (199)
T 2r2a_A 83 KPENIGSIVIVDEAQDVWPAR 103 (199)
T ss_dssp SGGGTTCEEEETTGGGTSBCC
T ss_pred ccccCceEEEEEChhhhccCc
Confidence 122357899999999986553
No 115
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.21 E-value=0.00018 Score=64.42 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=29.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
+..|+|.|+||+||||+|+.|++.++.+++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~ 38 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKDA 38 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHH
Confidence 3568999999999999999999999988776543
No 116
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00018 Score=65.11 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=29.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh-cCCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH-VNVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~-l~~pfv~i~~ 358 (461)
...|+|+|++|+||||+++.||+. ++.+++.++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~ 44 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGK 44 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHH
Confidence 467999999999999999999999 7888776653
No 117
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.15 E-value=0.00024 Score=62.64 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=28.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999998877654
No 118
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.14 E-value=0.00027 Score=64.43 Aligned_cols=33 Identities=36% Similarity=0.627 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
+..|+|.|+||+||||+|+.|++.++.+++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 356999999999999999999999998887654
No 119
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.12 E-value=0.00025 Score=63.32 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=28.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 45899999999999999999999998776543
No 120
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00026 Score=63.62 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
+..|+|.|++|+||||+|+.||+.++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356999999999999999999999998877654
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.11 E-value=0.00027 Score=61.40 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=26.5
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.|+|.|+||+||||+|+.| +.++.+++.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 5889999999999999999 88888877653
No 122
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.10 E-value=0.0003 Score=67.54 Aligned_cols=32 Identities=41% Similarity=0.501 Sum_probs=28.8
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.++|+||+|+||||||+.||+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887755
No 123
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.10 E-value=0.00038 Score=63.54 Aligned_cols=33 Identities=33% Similarity=0.681 Sum_probs=28.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
..|+|.|++|+||||+|+.|++.++..++..+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~ 51 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDA 51 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCc
Confidence 569999999999999999999999887776543
No 124
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.09 E-value=0.00031 Score=61.72 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=28.2
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|+|.|++|+||||+|+.|++.++.+++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~ 33 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDE 33 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcH
Confidence 48999999999999999999999988876543
No 125
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.09 E-value=0.00021 Score=63.86 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=27.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 46899999999999999999999988776543
No 126
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.06 E-value=0.00033 Score=64.91 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=28.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 5689999999999999999999999887765
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.05 E-value=0.00095 Score=61.80 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.0
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.+..++|+||+|+|||+|++.|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3467899999999999999999984
No 128
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.04 E-value=0.00036 Score=64.24 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=27.5
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.|+|+|+||+||||+|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4889999999999999999999988877653
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.03 E-value=0.00066 Score=62.30 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=18.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.-++++||+|+||||++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999998666543
No 130
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.02 E-value=0.004 Score=56.70 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|+||+|+|||||++.|+..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999644
No 131
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.01 E-value=0.00036 Score=62.79 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=28.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 56899999999999999999999998776543
No 132
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.01 E-value=0.00041 Score=63.76 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=27.5
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4889999999999999999999998877553
No 133
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.00 E-value=0.00032 Score=62.56 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=27.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC-----CceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN-----VPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~-----~pfv~i~ 357 (461)
..|+|.|++|+||||+++.|++.++ .+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 4689999999999999999999887 6666543
No 134
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.00 E-value=0.0015 Score=62.61 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=30.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHh---cCCceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH---VNVPFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~---l~~pfv~i~~s~l~ 362 (461)
..|+|.|+||+||||+|+.|++. .+.+++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 45899999999999999999997 67777755655444
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.99 E-value=0.00044 Score=62.10 Aligned_cols=36 Identities=39% Similarity=0.495 Sum_probs=30.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecchhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l 361 (461)
..++|.||+|+||||+++.|+...+...+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 568899999999999999999988777777776554
No 136
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.98 E-value=0.00043 Score=65.05 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
...|+|.|+||+||||+|+.||+.++.+++..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 357999999999999999999999998877653
No 137
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.98 E-value=0.0026 Score=59.04 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=21.1
Q ss_pred ccCCcEEEEccCCCchHHHHHHHH
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA 346 (461)
..+..++|.||+|+|||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345678899999999999999998
No 138
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.97 E-value=0.00041 Score=64.73 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=28.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
..|+|.|+||+||||+|+.||+.++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5699999999999999999999999887755
No 139
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.96 E-value=0.0013 Score=70.92 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=25.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEe
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i 356 (461)
...++|.|+||||||+++.+++..+ +..++.+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4678999999999999999998755 4444443
No 140
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.96 E-value=0.0017 Score=59.16 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
+.-++|+||+|+|||+|++.|+...+.+.+.++..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 45689999999999999999998445566555543
No 141
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.96 E-value=0.00036 Score=62.05 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=23.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
..|+|.|++|+||||+|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 56899999999999999999999999887
No 142
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.95 E-value=0.00041 Score=61.80 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=28.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 45899999999999999999999998776553
No 143
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.95 E-value=0.00035 Score=64.83 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=27.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
..|+|.|+||+||||+|+.||+.++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999999876554
No 144
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.93 E-value=0.00048 Score=64.00 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=28.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999887765
No 145
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.90 E-value=0.00061 Score=60.48 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=27.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..++|.|++|+||||+++.|++.++..++..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 46899999999999999999999887666543
No 146
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.88 E-value=0.00056 Score=62.21 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=28.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|+|+|++|+||||+|+.|++.++.+++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46899999999999999999999998777654
No 147
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.85 E-value=0.0031 Score=59.74 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=27.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
.+++|++|+|+|||.+|.+++..++.+.+.+..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3489999999999999999998887666655544
No 148
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.83 E-value=0.00064 Score=62.79 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=27.3
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.|+|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887766
No 149
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.83 E-value=0.00047 Score=65.66 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
+..|+|.|+||+||||+|+.|++.++.+++.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 356999999999999999999999988776554
No 150
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.78 E-value=0.00098 Score=59.57 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=31.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~ 362 (461)
..|+|+|++|+||||+++.|++.+ +.+++.++...+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 568899999999999999999988 8888888765543
No 151
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.78 E-value=0.00091 Score=61.20 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
+..++|.|++|+||||+++.|++.++..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4568899999999999999999999776554
No 152
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.0029 Score=60.35 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=23.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i 356 (461)
.-++++|++|+||||++..++..+ +..++.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 457899999999999998887655 3444444
No 153
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.74 E-value=0.0011 Score=59.15 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=27.4
Q ss_pred cEEEEccCCCchHHHHHHHHHhc---CCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~ 357 (461)
.|+|.|++|+||||+|+.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88887664
No 154
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.74 E-value=0.00094 Score=62.67 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=26.0
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
.|+|.||||+||+|.|+.||+.++.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999887654
No 155
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.74 E-value=0.00091 Score=60.16 Aligned_cols=29 Identities=14% Similarity=0.480 Sum_probs=25.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
.|+|.|++|+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999886653
No 156
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.74 E-value=0.003 Score=57.85 Aligned_cols=25 Identities=48% Similarity=0.531 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..-+.|.||+|+|||||++.|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999744
No 157
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.72 E-value=0.001 Score=60.08 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc-CCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l-~~pfv~i~ 357 (461)
+..|+|.|++|+||||+++.|++.+ +.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3568999999999999999999998 46776554
No 158
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.70 E-value=0.0009 Score=63.88 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=31.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l 361 (461)
+..|+|.|+||+||||+|+.|++.++..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3568999999999999999999999866666676655
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.69 E-value=0.00098 Score=61.44 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=26.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
..|.|.|++|+||||+++.|++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999887664
No 160
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.64 E-value=0.00071 Score=60.19 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=22.3
Q ss_pred cEEEEccCCCchHHHHHHHHHhcC
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.|+|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999886
No 161
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.62 E-value=0.0011 Score=62.08 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=26.6
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.|+|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 389999999999999999999998776655
No 162
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.60 E-value=0.0013 Score=64.46 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecchhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~l 361 (461)
+..|+|.||||+||||+|+.|++.+...++.++...+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3568999999999999999999988544566665433
No 163
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.60 E-value=0.0012 Score=62.64 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
++.|+|.||||+||+|+|+.||+.++.+.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 356788999999999999999999987655
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.60 E-value=0.0015 Score=66.96 Aligned_cols=31 Identities=35% Similarity=0.341 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
+..++|+||+|+|||||+++|+..++..++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 4678999999999999999999988765544
No 165
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.59 E-value=0.0011 Score=60.21 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=26.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|.|.|++|+||||+++.|++ ++.+++..+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 488999999999999999999 8887766554
No 166
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.57 E-value=0.0013 Score=59.41 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=28.0
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.|.|.|++|+||||+|+.||+.++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998887654
No 167
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.55 E-value=0.00084 Score=61.11 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCce
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pf 353 (461)
+..|+|.|++|+||||+++.|++.++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 46689999999999999999999875543
No 168
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.55 E-value=0.0017 Score=58.18 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.8
Q ss_pred EEEEccCCCchHHHHHHHHHhc---CCceEEec
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~ 357 (461)
|.|.|++|+||||+++.|++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88877543
No 169
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0014 Score=63.39 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=30.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
...|.|.|++|+||||+++.||+.++.+|+..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 3679999999999999999999999998876554
No 170
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.53 E-value=0.0018 Score=59.18 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l 361 (461)
+..|.|.||+|+||||++++|+..+ +...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3568899999999999999999988 444335555444
No 171
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0013 Score=66.19 Aligned_cols=34 Identities=38% Similarity=0.600 Sum_probs=30.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..|+|+||+|+|||+||+.||+.++..++.+|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 3589999999999999999999999888877653
No 172
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.52 E-value=0.0039 Score=63.06 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=44.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhh------cCcc--------cccHHHHHHHHHHhhchhh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ------AGYV--------GEDVESILYKLLAQAEFNV 386 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~------~g~v--------Ge~~e~~L~~lf~~a~~~v 386 (461)
....++|+||||+|||+||..++..+ +...+.++...... .++. ....+..+.. +...+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~----~~~l~ 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEI----ADMLV 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHH----HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHH----HHHHH
Confidence 45678999999999999999998654 34555555432110 0110 0122222221 11112
Q ss_pred hccCceEEEEcCccccch
Q 012525 387 EAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 387 ~~a~~gVLfIDEID~L~~ 404 (461)
...+..+||||++..+..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 233577999999999884
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.52 E-value=0.0043 Score=63.21 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=46.2
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc------Cc--------ccccHHHHHHHHHHhhchhh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA------GY--------VGEDVESILYKLLAQAEFNV 386 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~------g~--------vGe~~e~~L~~lf~~a~~~v 386 (461)
....++|+||||+||||||..++..+ +..++.++....... ++ .....+..+..+ ...+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~----~~l~ 135 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIV----DELV 135 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHH----HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHH----HHHh
Confidence 35678899999999999999998764 445555555432110 00 011223332221 1112
Q ss_pred hccCceEEEEcCccccch
Q 012525 387 EAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 387 ~~a~~gVLfIDEID~L~~ 404 (461)
......+++||++..+..
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 223567999999998876
No 174
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.52 E-value=0.0014 Score=59.03 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=27.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|.|.|++|+||||+++.|++. +.+++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 56889999999999999999998 88877655
No 175
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.50 E-value=0.0087 Score=55.25 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=20.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.+..++|+||||+|||++|..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999888754
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0015 Score=59.59 Aligned_cols=30 Identities=47% Similarity=0.586 Sum_probs=25.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.|.|.|++|+||||+++.|++ ++.+++..+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 478999999999999999998 888876544
No 177
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.47 E-value=0.01 Score=55.70 Aligned_cols=112 Identities=14% Similarity=0.145 Sum_probs=61.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecch---------hhhhc----------Cccccc-----HHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT---------TLTQA----------GYVGED-----VESILYK 377 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s---------~l~~~----------g~vGe~-----~e~~L~~ 377 (461)
...|++++.+|.||||+|-.+|-.. +..++.+... .+... +|.... .+.....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3679999999999999999988544 4444444211 11111 111111 1223344
Q ss_pred HHHhhchhhhccCceEEEEcCccccchhhhccccccccchHHHHHHHHHHHhCceeeeecceeeecCCeEEEecCCCCcC
Q 012525 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTETKTFAAVSKVSRDNLYIKTSGLDSK 457 (461)
Q Consensus 378 lf~~a~~~v~~a~~gVLfIDEID~L~~~R~~~~~~~~~s~~~v~~aLL~~LEg~~v~i~~~~r~~~rd~IiI~TsNid~e 457 (461)
.+..+...+......+|+|||+..+..- .-. -.+.++++|+.. +...-+|.|.|..+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~-------g~l----~~~ev~~~l~~R-----------p~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAY-------DYL----PLEEVISALNAR-----------PGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHT-------TSS----CHHHHHHHHHTS-----------CTTCEEEEECSSCCH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccC-------CCC----CHHHHHHHHHhC-----------cCCCEEEEECCCCcH
Confidence 4444544454556779999999754332 001 134566666622 234566667766544
Q ss_pred c
Q 012525 458 T 458 (461)
Q Consensus 458 ~ 458 (461)
+
T Consensus 166 ~ 166 (196)
T 1g5t_A 166 D 166 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.46 E-value=0.0021 Score=63.53 Aligned_cols=81 Identities=10% Similarity=0.057 Sum_probs=52.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC----ceEEecchhhhhcCcccccHHHHHHHHHHhhchhhhccCceEEEEcCcc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~----pfv~i~~s~l~~~g~vGe~~e~~L~~lf~~a~~~v~~a~~gVLfIDEID 400 (461)
...+||+||.|+||++.++.|++.+.. ++..+. +.. ..++... ...+..........||+|||++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~----~~~~~~l----~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---IDP----NTDWNAI----FSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---CCT----TCCHHHH----HHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---ecC----CCCHHHH----HHHhcCcCCccCCeEEEEECCC
Confidence 367899999999999999999886521 211111 110 1232332 2222221122456799999999
Q ss_pred c-cchhhhccccccccchHHHHHHHHHHHhC
Q 012525 401 K-ITKKAESLNISRDVSGEGVQQALLKMLEG 430 (461)
Q Consensus 401 ~-L~~~R~~~~~~~~~s~~~v~~aLL~~LEg 430 (461)
. +..+ .+++|++.||.
T Consensus 87 ~kl~~~--------------~~~aLl~~le~ 103 (343)
T 1jr3_D 87 NGPNAA--------------INEQLLTLTGL 103 (343)
T ss_dssp SCCCTT--------------HHHHHHHHHTT
T ss_pred CCCChH--------------HHHHHHHHHhc
Confidence 8 8776 78999999994
No 179
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.39 E-value=0.0023 Score=60.41 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
+..++|.||+|+||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999998877544
No 180
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.39 E-value=0.0053 Score=56.53 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=29.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC----CceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~----~pfv~i~~s~l~ 362 (461)
..|+|.|++|+||||+++.|++.++ .+++.++...+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 5688999999999999999999774 456666654443
No 181
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.36 E-value=0.0011 Score=60.24 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
+..|+|.|++|+||||+|+.|++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999997643
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.35 E-value=0.0046 Score=61.33 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=28.4
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---------CCceEEecch
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---------NVPFVIADAT 359 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---------~~pfv~i~~s 359 (461)
.....++|+|+||+|||+||..+|..+ +...+.++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 345678999999999999999999764 3455555554
No 183
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.34 E-value=0.002 Score=58.19 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
..|+|.|++|+||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458999999999999999999988763
No 184
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.33 E-value=0.0021 Score=59.55 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=28.0
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|.|+|.+|+||||+++.|++.++.+++..+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D~ 45 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDR 45 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECcH
Confidence 37799999999999999999998988876554
No 185
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.32 E-value=0.01 Score=64.09 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...+++.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999887776544
No 186
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.31 E-value=0.0019 Score=65.59 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=29.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..|+|.||+|+|||+||..||+.++..++..|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4688999999999999999999998877765554
No 187
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.24 E-value=0.0028 Score=58.19 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=29.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
..|.|.|++|+||||+++.|++.++.+++..+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~ 36 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTGA 36 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCCh
Confidence 468999999999999999999999988876543
No 188
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.24 E-value=0.003 Score=60.69 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
+..|.|.||+|+||||+|+.||+.++.+++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 35689999999999999999999998876643
No 189
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.24 E-value=0.0019 Score=65.96 Aligned_cols=30 Identities=33% Similarity=0.577 Sum_probs=27.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
.+|+|+|++|+||||++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888854
No 190
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.22 E-value=0.0028 Score=58.11 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=24.0
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.+..|+|.||+|+||||+++.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356799999999999999999999874
No 191
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.22 E-value=0.021 Score=59.60 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~ 357 (461)
+..|+|.|++|+||||++..||..+ +..+..++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5678899999999999999999766 44444443
No 192
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.21 E-value=0.0027 Score=58.51 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=26.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|.|.|++|+||||+++.|++ ++.+++..+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4588999999999999999998 888777653
No 193
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.14 E-value=0.0039 Score=59.57 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
...|.|.||+|+||||+++.||+.++..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3568899999999999999999999876653
No 194
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.034 Score=58.25 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=44.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc------------------CcccccHHHHHHHHHHhhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA------------------GYVGEDVESILYKLLAQAE 383 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~------------------g~vGe~~e~~L~~lf~~a~ 383 (461)
+..|+|.|++|+||||++..||..+ +..+..+++...... ...+.+....+...+..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999766 444444443221100 0122343444444444332
Q ss_pred hhhhccCceEEEEcCccccc
Q 012525 384 FNVEAAQQGMVYIDEVDKIT 403 (461)
Q Consensus 384 ~~v~~a~~gVLfIDEID~L~ 403 (461)
. ...-+||||..-.+.
T Consensus 180 ~----~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 180 S----KGVDIIIVDTAGRHK 195 (443)
T ss_dssp H----TTCSEEEEECCCCSS
T ss_pred h----CCCCEEEEECCCccc
Confidence 2 134589999886554
No 195
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.09 E-value=0.0037 Score=58.71 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=28.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
+..|.|.|++|+||||+++.|++.++.+++..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 456899999999999999999999998776543
No 196
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.06 E-value=0.0026 Score=61.49 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-CCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-~~pfv~i~ 357 (461)
..|+|.|+||+||||+|+.|++.+ +..++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 358999999999999999999964 65555444
No 197
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.05 E-value=0.011 Score=72.05 Aligned_cols=81 Identities=23% Similarity=0.246 Sum_probs=48.7
Q ss_pred cccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc---Cccccc-----------HHHHHHHHHHhhch
Q 012525 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGED-----------VESILYKLLAQAEF 384 (461)
Q Consensus 322 ~~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~---g~vGe~-----------~e~~L~~lf~~a~~ 384 (461)
-....++||+||||||||+||.+++.+. +.+.+.++..+..+. ...|.+ .+..++ +....
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~-i~~~l-- 1154 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE-ICDAL-- 1154 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHH-HHHHH--
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHH-HHHHH--
Confidence 3457889999999999999999987543 556666666543321 011110 011111 11111
Q ss_pred hhhccCceEEEEcCccccchhh
Q 012525 385 NVEAAQQGMVYIDEVDKITKKA 406 (461)
Q Consensus 385 ~v~~a~~gVLfIDEID~L~~~R 406 (461)
.....+.+|+|||+..|.+..
T Consensus 1155 -~~~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1155 -ARSGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp -HHHTCCSEEEESCGGGCCCHH
T ss_pred -HHhCCCCEEEECCcccccccc
Confidence 112357799999999997654
No 198
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.05 E-value=0.0074 Score=54.45 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.++++.+|+|+|||+++..++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999998877754
No 199
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.05 E-value=0.012 Score=59.78 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=28.1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecch
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s 359 (461)
....++|+|+||+|||+||..+|..+ +.+++.++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45678999999999999999998654 4566666653
No 200
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.05 E-value=0.004 Score=59.10 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=24.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
..|.|.|++|+||||+|+.|++.++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 458899999999999999999999876
No 201
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.03 E-value=0.0031 Score=57.59 Aligned_cols=32 Identities=41% Similarity=0.521 Sum_probs=26.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc-CCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l-~~pfv~i~ 357 (461)
..|.|.|++|+||||+|+.|++.+ +..++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 457899999999999999999988 66665544
No 202
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.98 E-value=0.015 Score=59.94 Aligned_cols=25 Identities=36% Similarity=0.325 Sum_probs=21.1
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHH
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
....-++|+||+|+|||||++.|+-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3456788999999999999997764
No 203
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.93 E-value=0.0081 Score=60.52 Aligned_cols=27 Identities=44% Similarity=0.457 Sum_probs=23.4
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.-+.|+||+|+|||||++.++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345668899999999999999999876
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.86 E-value=0.02 Score=58.15 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..++|.||+|+||||+.++|+..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 468999999999999999998866
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.84 E-value=0.016 Score=58.13 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.0
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.+..++|+||||+|||+||..+|..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566889999999999999999986
No 206
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.80 E-value=0.0058 Score=56.74 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=27.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
..|.|.|++|+|||++++.||+.++.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 458899999999999999999999999985
No 207
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.80 E-value=0.0053 Score=61.72 Aligned_cols=33 Identities=42% Similarity=0.655 Sum_probs=28.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.-|+|.||+|+|||+||..||+.++..++.+|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 457899999999999999999999877766654
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.79 E-value=0.0049 Score=55.28 Aligned_cols=37 Identities=32% Similarity=0.322 Sum_probs=28.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTL 361 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l 361 (461)
+..|+|.|++|+||||+++.|++.+. .+++.++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 35689999999999999999999874 33445554443
No 209
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.79 E-value=0.0051 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568899999999999999999877
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.75 E-value=0.0069 Score=54.35 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.9
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCC
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
.++|.||+|+||||+++.|++..+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 211
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.73 E-value=0.017 Score=58.85 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=46.0
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc------Cc--------ccccHHHHHHHHHHhhchh
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA------GY--------VGEDVESILYKLLAQAEFN 385 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~------g~--------vGe~~e~~L~~lf~~a~~~ 385 (461)
.....++|+|+||+|||+||..+|..+ +.+++.++....... ++ .....+..+..+ ...
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l----~~l 147 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIM----ELL 147 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH----HHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHH----HHH
Confidence 345678899999999999999888654 445665555421110 00 001222222222 111
Q ss_pred hhccCceEEEEcCccccch
Q 012525 386 VEAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 386 v~~a~~gVLfIDEID~L~~ 404 (461)
+......+||||.+..+..
T Consensus 148 ~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HTTTCCSEEEEECTTTCCC
T ss_pred HhcCCCCEEEEeChHHhcc
Confidence 2223567999999999875
No 212
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.72 E-value=0.005 Score=63.42 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
+.-|+|+|+||+||||+|+.|++.++..++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 45688999999999999999999987765543
No 213
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.72 E-value=0.0065 Score=61.19 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=27.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.-|+|.||+|+|||+||..||+.++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 347899999999999999999998876665544
No 214
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.71 E-value=0.014 Score=62.16 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC---ceEEecchh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV---PFVIADATT 360 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~---pfv~i~~s~ 360 (461)
+..|+|+|.||+||||+|+.||+.++. +...++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 456889999999999999999998843 433444443
No 215
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.71 E-value=0.0058 Score=56.38 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+.-++|.||+|+|||||++.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998774
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.71 E-value=0.0064 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.-+.|.||+|+|||||++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998763
No 217
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.70 E-value=0.0058 Score=61.95 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=27.5
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|+|.||+|+|||+||+.||+.++..++.+|.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 58899999999999999999999876665554
No 218
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.69 E-value=0.0051 Score=58.27 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=28.8
Q ss_pred ccccCCcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 321 ~~~~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
++.....|+|.||+|+|||+||..|++... .++..+.
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 344467799999999999999999999876 5544443
No 219
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.66 E-value=0.0054 Score=56.40 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=22.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+..|.|.||+|+|||||+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999874
No 220
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.57 E-value=0.0076 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+.-+.|.||+|+|||||++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3557899999999999999999875
No 221
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.56 E-value=0.021 Score=57.14 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=23.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..++|.||+|+|||||+++|+..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 6799999999999999999998874
No 222
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.55 E-value=0.0066 Score=55.35 Aligned_cols=30 Identities=40% Similarity=0.483 Sum_probs=25.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC--CceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~--~pfv~ 355 (461)
..+.|.||+|+|||||++.|+..++ ..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4578999999999999999999887 55443
No 223
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.53 E-value=0.0064 Score=59.19 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
..|.|.|++|+||||+|+.|+ .++.+++..+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 458899999999999999999 5787776553
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.43 E-value=0.023 Score=52.34 Aligned_cols=35 Identities=37% Similarity=0.457 Sum_probs=25.1
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHh----cCCceEEec
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARH----VNVPFVIAD 357 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~----l~~pfv~i~ 357 (461)
..+.-++|.|+||+|||++|..+|.. .+.+++.++
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 34567899999999999999877642 244555444
No 225
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.42 E-value=0.044 Score=57.02 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=23.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
+..|+|+|.||+||||+++.|++.++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 356899999999999999999998753
No 226
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.39 E-value=0.014 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=22.3
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.....++|+|+||+|||++|..+|..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999865
No 227
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.39 E-value=0.059 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.|++|+||||++..||..+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4568899999999999999999766
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.35 E-value=0.0096 Score=53.73 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=21.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998653
No 229
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.24 E-value=0.015 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+.|+|.||+|+|||||++.|.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998765
No 230
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.23 E-value=0.012 Score=64.21 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~ 362 (461)
+..|+|+|.+|+||||+|++|++.+ +.+++.++...+.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 3568999999999999999999998 8899888765543
No 231
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.16 E-value=0.017 Score=69.38 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=48.6
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecchhhhhc---CcccccH-------HHHHHHHHHhhchhhhcc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDV-------ESILYKLLAQAEFNVEAA 389 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~s~l~~~---g~vGe~~-------e~~L~~lf~~a~~~v~~a 389 (461)
..+..++|+|+||+|||+||..+|..+ +.+++.++....... ...|.+. +..+..++......+...
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~ 809 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHcc
Confidence 456789999999999999999998755 345666665432210 0011000 001122222222222334
Q ss_pred CceEEEEcCccccch
Q 012525 390 QQGMVYIDEVDKITK 404 (461)
Q Consensus 390 ~~gVLfIDEID~L~~ 404 (461)
...+||||++..+..
T Consensus 810 ~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 810 AVDVIVVDSVAALTP 824 (1706)
T ss_dssp CCSEEEESCSTTCCC
T ss_pred CCCEEEEechhhhcc
Confidence 678999999999885
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.14 E-value=0.011 Score=54.12 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..+.|.||+|+|||||++.|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999865
No 233
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.01 E-value=0.0062 Score=55.35 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEccCCCchHHHHHHHHHhcC
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|+|.|++|+||||+++.|++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 234
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.98 E-value=0.013 Score=60.89 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=26.7
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEec
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~ 357 (461)
.|+|.||+|+|||+||..||+.++..++.++
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 4789999999999999999999987666544
No 235
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.95 E-value=0.069 Score=56.52 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 276 IGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 276 vGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
+|.+..++.|...+... .. .....|.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------~~---------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------CD---------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------TT---------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------cC---------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999888877310 00 0125688999999999999999996
No 236
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.86 E-value=0.16 Score=53.88 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
+..|+|.|++|+||||++..||..+ +..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4578999999999999999999765 455554444
No 237
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.85 E-value=0.024 Score=51.82 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=25.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i 356 (461)
.-|.|.|++|+||||+++.|+..+ +.+++.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 457899999999999999999876 4455444
No 238
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.84 E-value=0.016 Score=55.03 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=27.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEE
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~ 355 (461)
..|.|.|++|||||++|+.||+.++.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457899999999999999999999998875
No 239
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.84 E-value=0.034 Score=56.23 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=44.1
Q ss_pred cEEEEccCCCchHHHHHHHHHhc-----CCceEEecchhhhhc------Cc--------ccccHHHH-HHHHHHhhchhh
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQA------GY--------VGEDVESI-LYKLLAQAEFNV 386 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l-----~~pfv~i~~s~l~~~------g~--------vGe~~e~~-L~~lf~~a~~~v 386 (461)
-++|+||||+|||+||..++..+ +..++.++...-... ++ .....+.. +. +.... ..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~-i~~~l-~~i 107 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRID-MVNQL-DAI 107 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHH-HHHHH-HTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHH-HHHHH-HHh
Confidence 58999999999999987776443 445666665431110 11 01122333 22 11111 012
Q ss_pred hccCceEEEEcCccccch
Q 012525 387 EAAQQGMVYIDEVDKITK 404 (461)
Q Consensus 387 ~~a~~gVLfIDEID~L~~ 404 (461)
....+.+|+||-|..|..
T Consensus 108 ~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp CTTCCEEEEEECSTTCBC
T ss_pred hccCceEEEEeccccccc
Confidence 344678999999999975
No 240
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.76 E-value=0.046 Score=57.34 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=19.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.-.++.|+||||||++...+++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45789999999999998877753
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.73 E-value=0.031 Score=56.03 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..++|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999866
No 242
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.73 E-value=0.022 Score=60.11 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..++|+|++|+|||+|+..|+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 568999999999999999887654
No 243
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.71 E-value=0.017 Score=54.43 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
.-|-|.||.|+|||||++.|+..++..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 457799999999999999999987653
No 244
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.70 E-value=0.048 Score=53.91 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.||.|+||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999865
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.68 E-value=0.019 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+.-+.|.||+|+|||||+++|+..+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3557899999999999999999876
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.67 E-value=0.02 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..+.|.||+|+|||||++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4668899999999999999999876
No 247
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.65 E-value=0.059 Score=49.88 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=23.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEe
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i 356 (461)
.-.+++|++|+||||.+..++..+ +..++.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 347899999999999888777655 4444444
No 248
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.63 E-value=0.018 Score=55.23 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=26.6
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEe
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i 356 (461)
.+-|.|+||+||||+|+.|++.++.+++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 366899999999999999999999887755
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.61 E-value=0.021 Score=53.44 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=23.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+.-++|.||+|+|||||+++|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46688999999999999999998764
No 250
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.60 E-value=0.13 Score=60.55 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.1
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..+..+.|.||+|+|||||+++|.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3456788999999999999999998774
No 251
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.53 E-value=0.075 Score=56.07 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCCchHHHHHHH
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTL 345 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraL 345 (461)
.+..++|.||+|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4577899999999999999994
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.48 E-value=0.021 Score=53.97 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=25.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC--CceEE
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN--VPFVI 355 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~--~pfv~ 355 (461)
+.-|+|.|++|+||||+++.|++.+. ..++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 35688999999999999999999886 34443
No 253
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.26 E-value=0.11 Score=58.70 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=34.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
++|.++..+.|...+... ....+.|.|+|+.|+|||+||+.+++.
T Consensus 126 ~vgR~~~~~~l~~~l~~~-----------------------------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL-----------------------------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT-----------------------------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhc-----------------------------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 689999998888877300 001245789999999999999998864
No 254
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.23 E-value=0.058 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.-|.|.|++|+||||||+.|++.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999998775
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.22 E-value=0.028 Score=52.96 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
+.-+.|.||+|+|||||.++|+..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46688999999999999999998764
No 256
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.20 E-value=0.019 Score=61.22 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=24.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
..|+|+|.+|+||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999975
No 257
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.20 E-value=0.069 Score=54.32 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..++|.||.|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34578899999999999999999866
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.19 E-value=0.028 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.|.||.|+|||||.++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999999987
No 259
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.18 E-value=0.026 Score=60.79 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=30.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC----CceEEecchhhh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTLT 362 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~----~pfv~i~~s~l~ 362 (461)
..|+|.|.+|+||||+|++|++.++ .+++.++...+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 5689999999999999999999886 677777765543
No 260
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.15 E-value=0.012 Score=57.65 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=19.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.-|.|.|++|+||||+|+.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3478999999999999999999876
No 261
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.14 E-value=0.024 Score=50.61 Aligned_cols=19 Identities=53% Similarity=0.805 Sum_probs=17.1
Q ss_pred CcEEEEccCCCchHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKT 344 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAra 344 (461)
.-+.|.||+|+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4578999999999999995
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.11 E-value=0.07 Score=53.17 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.|++|+||||++..||..+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999765
No 263
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.09 E-value=0.15 Score=48.38 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=23.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~ 357 (461)
.-.+++|++|+||||.+..++..+ +..++.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345689999999999887777544 55555554
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.92 E-value=0.021 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHHHHH-Hhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLA-RHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA-~~l 349 (461)
+.-+.|.||+|+|||||++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3567899999999999999999 765
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.91 E-value=0.061 Score=57.22 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.|++|+|||||++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4568899999999999999999866
No 266
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.82 E-value=0.036 Score=51.02 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.1
Q ss_pred cEEEEccCCCchHHHHHHHHHhc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.|.||+|+|||||++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 267
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.82 E-value=0.017 Score=54.92 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=22.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.-|+|.|++|+||||+++.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5688999999999999999999983
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.73 E-value=0.035 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...++|.||+|+||||+.++|+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 4568899999999999999999865
No 269
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.70 E-value=0.035 Score=53.24 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
....++|+||+|+|||||++.++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998643
No 270
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.69 E-value=0.3 Score=52.77 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc-------CCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV-------NVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l-------~~pfv~i~~s 359 (461)
..|+|+.|.+|+|||++.+.|...+ .+.|+.+|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4899999999999999999876543 1346777654
No 271
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.64 E-value=0.17 Score=47.41 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=24.9
Q ss_pred CcEEEEccCCCchH-HHHHHHHHhc--CCceEEecch
Q 012525 326 SNVLLMGPTGSGKT-LLAKTLARHV--NVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKT-tLAraLA~~l--~~pfv~i~~s 359 (461)
.-.+++|++|+||| .|.+++.+.. +..++.+...
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 34689999999999 8888887644 4555555533
No 272
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.60 E-value=0.039 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=23.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..+.|+||+|+|||||+++|+..+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4678899999999999999999987
No 273
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.54 E-value=0.072 Score=54.51 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=27.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCceEEecch
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s 359 (461)
..+||.+|+|+|||.++-.++..++...+.+-.+
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3489999999999999988888777766655554
No 274
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.52 E-value=0.058 Score=56.88 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=33.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccccccccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 275 VvGqd~aK~~L~~al~~~~kri~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
++|.+...+.|...+.. . ....+.|+|+|++|+|||+||+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~-------~----------------------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSK-------L----------------------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTT-------S----------------------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhc-------c----------------------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 68999999888887720 0 01124688999999999999999875
No 275
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.44 E-value=0.047 Score=50.44 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=27.1
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceEEecchh
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~s~ 360 (461)
+|++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 77776666543
No 276
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.40 E-value=0.044 Score=53.86 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.-|.|.|++|+|||||++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577999999999999999999875
No 277
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.37 E-value=0.057 Score=47.86 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=23.4
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..+.-.+|+||.|+|||+|+++|+-.+.
T Consensus 24 ~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3345678999999999999999998764
No 278
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.35 E-value=0.042 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..|+|.|.+|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999984
No 279
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.30 E-value=0.045 Score=52.77 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-++|.|+||+|||||++.||..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998755
No 280
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.27 E-value=0.1 Score=61.39 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=23.8
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..+..|-|.|++|+|||||+++|.+...
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 3456788999999999999999998663
No 281
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.13 E-value=0.038 Score=59.37 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=28.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC----CceEEecchhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTL 361 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~----~pfv~i~~s~l 361 (461)
+..+.|+|++|+|||||+++||..+. ..+..++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 35688999999999999999999885 23444555544
No 282
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.10 E-value=0.048 Score=54.11 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+.-|.|.||+|+|||||++.|+..+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhc
Confidence 3557799999999999999999876
No 283
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.03 E-value=0.055 Score=53.55 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..++|.||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678899999999999999999766
No 284
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.03 E-value=0.059 Score=50.92 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=27.4
Q ss_pred cEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
.|-|+|..||||||+++.|++ ++.+++..|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 378999999999999999998 8998877665
No 285
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.91 E-value=0.052 Score=50.37 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.0
Q ss_pred ccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 321 VELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 321 ~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
++.....|||.|++|+||||+|.+|.+.
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4455688999999999999999999874
No 286
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.85 E-value=0.14 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.||+|+|||+|++.|++.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4679999999999999999999865
No 287
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.79 E-value=0.047 Score=51.80 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.5
Q ss_pred cccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 322 ~~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
-..+..+.|.||.|+|||||.++|+..+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3345678899999999999999999755
No 288
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.71 E-value=0.099 Score=56.54 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=15.6
Q ss_pred cEEEEccCCCchHHHH-HHHHH
Q 012525 327 NVLLMGPTGSGKTLLA-KTLAR 347 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLA-raLA~ 347 (461)
-.|+.||||||||+++ .+|+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999754 44443
No 289
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.71 E-value=0.062 Score=50.37 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.-|+|.|++|+||||+++.|++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998773
No 290
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.66 E-value=0.2 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.234 Sum_probs=18.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.++++.+|+|+|||+++-..+-
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5799999999999998765543
No 291
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.63 E-value=0.058 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+.-|+|.|++|+||||+++.|++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999877
No 292
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.63 E-value=0.094 Score=50.28 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=25.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
.+|+|.|++||||||+|-.+|..+ +..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 569999999999999998888765 555544443
No 293
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.59 E-value=0.048 Score=51.79 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.2
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999765
No 294
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.59 E-value=0.058 Score=54.42 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=23.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..++|.||+|+|||||+++|+..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6799999999999999999998774
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.54 E-value=0.063 Score=54.51 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..++|.||+|+||||++++|+..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 568999999999999999999866
No 296
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.52 E-value=0.2 Score=55.74 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.++++.||+|+|||+++..+..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999997666643
No 297
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.42 E-value=0.052 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..+.|.||.|+|||||.++|+..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567899999999999999999765
No 298
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.42 E-value=0.07 Score=52.49 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..++|.|++|+||||++..||..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999755
No 299
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.40 E-value=0.07 Score=53.44 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.-|.|.||+|+||||+++.|+..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3577999999999999999999875
No 300
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.39 E-value=0.065 Score=53.70 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
..+.|.||+|+|||||+++|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 568899999999999999999987543
No 301
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.38 E-value=0.36 Score=44.69 Aligned_cols=19 Identities=47% Similarity=0.616 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAK 343 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAr 343 (461)
..++++..|+|+|||+.+-
T Consensus 66 ~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3679999999999998643
No 302
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.37 E-value=0.075 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.|.|++|+|||||+..|++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 347899999999999999999876
No 303
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.34 E-value=0.11 Score=48.89 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
+.-|+|.|++|+||||+++.|++.+...
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3568999999999999999999999763
No 304
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.29 E-value=0.29 Score=48.52 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=24.0
Q ss_pred cEEEEccCCCchHHHHHHHHHhc----CCceEEecc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHV----NVPFVIADA 358 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~ 358 (461)
+++|..|+|+|||+.+-+++... +...+.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 69999999999999988776554 444444444
No 305
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.21 E-value=0.078 Score=50.70 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+.-|+|.|++|+||||+++.|++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999877
No 306
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.18 E-value=0.13 Score=50.61 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=25.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
+..++|.|++|+||||++..||..+ +..+..+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5678899999999999999999766 444444443
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.17 E-value=0.064 Score=50.07 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=20.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..+.|.||.|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 55789999999999999999975
No 308
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.16 E-value=0.081 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.9
Q ss_pred cEEEEccCCCchHHHHHHHHHh
Q 012525 327 NVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.|+|.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 309
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.07 E-value=0.067 Score=51.33 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=22.9
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345668899999999999999999755
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.06 E-value=0.077 Score=50.72 Aligned_cols=25 Identities=44% Similarity=0.647 Sum_probs=22.2
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.+..+.|.||.|+|||||.++|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4566889999999999999999986
No 311
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.04 E-value=0.067 Score=50.27 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=23.3
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999765
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.04 E-value=0.086 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.-++|.|++|+|||||++.|.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 457899999999999999998765
No 313
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.03 E-value=0.066 Score=51.66 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345567899999999999999999765
No 314
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.00 E-value=0.063 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.4
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999999866
No 315
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.98 E-value=0.08 Score=51.23 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=23.0
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345668899999999999999999863
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.97 E-value=0.089 Score=47.18 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 317
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.95 E-value=0.082 Score=47.35 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..|+|.|++|+|||||.+.|+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999999754
No 318
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.93 E-value=0.062 Score=51.39 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.2
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999765
No 319
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.92 E-value=0.049 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.6
Q ss_pred cEEEEccCCCchHHHHHHHHHhcC
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.+.|.|++|+|||||++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998763
No 320
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.88 E-value=0.063 Score=52.42 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.2
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.-+.|.||.|+|||||.++|+..+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345668899999999999999999765
No 321
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.86 E-value=0.083 Score=50.39 Aligned_cols=24 Identities=38% Similarity=0.713 Sum_probs=21.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.|.||.|+|||||.++|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999765
No 322
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.85 E-value=0.066 Score=51.96 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..+.|.||.|+|||||.++|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44668899999999999999999765
No 323
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.85 E-value=0.073 Score=56.53 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
.+++|.||+|+||||++++|+..+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5699999999999999999998874
No 324
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.16 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..|+|.|++|+|||+|...|....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998643
No 325
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.81 E-value=0.071 Score=51.67 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=23.0
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||+++|+..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678899999999999999999755
No 326
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.80 E-value=0.1 Score=44.46 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...|...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 327
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.79 E-value=0.1 Score=47.10 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...|+|.|++|+|||+|..+|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999998754
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.76 E-value=0.078 Score=53.98 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-+.|.||+|+|||||.++||...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34567899999999999999999755
No 329
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.76 E-value=0.39 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|++|+|||+|..+|..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 35699999999999999999985
No 330
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.75 E-value=0.084 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=20.8
Q ss_pred cEEEEccCCCchHHHHHHHHHhc
Q 012525 327 NVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~l 349 (461)
++.|.||+|+|||||.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
No 331
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.74 E-value=0.07 Score=51.41 Aligned_cols=27 Identities=41% Similarity=0.524 Sum_probs=23.3
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345678899999999999999999765
No 332
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.73 E-value=0.075 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..+.|.||.|+|||||.++|+..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45668899999999999999999755
No 333
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.69 E-value=0.072 Score=50.65 Aligned_cols=27 Identities=30% Similarity=0.504 Sum_probs=22.9
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999999755
No 334
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.69 E-value=0.068 Score=52.22 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.0
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345668899999999999999999765
No 335
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.66 E-value=0.077 Score=51.43 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.7
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..+.|.||.|+|||||.++|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45668899999999999999999765
No 336
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.64 E-value=0.09 Score=53.38 Aligned_cols=27 Identities=41% Similarity=0.532 Sum_probs=23.0
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.-+.|.||+|+|||||.++||...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345667899999999999999999765
No 337
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.62 E-value=0.1 Score=44.02 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 338
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.54 E-value=0.32 Score=50.57 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=22.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..++|.|++|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45668899999999999999999766
No 339
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.51 E-value=0.11 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999998753
No 340
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.49 E-value=0.086 Score=50.64 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..+.|.||.|+|||||.++|+..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999765
No 341
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.45 E-value=0.12 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999853
No 342
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.42 E-value=0.67 Score=48.35 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=27.2
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc----CCceEEecch
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~s 359 (461)
...-++|.|+||+|||++|..+|..+ +.+++.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34568899999999999999998754 3456655543
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.41 E-value=0.096 Score=53.78 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=22.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-+.|.||+|+|||||.++||...
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34567899999999999999999765
No 344
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.40 E-value=0.11 Score=53.92 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcC
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..++|.||+|+||||+.++|+..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4589999999999999999999875
No 345
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.40 E-value=0.085 Score=50.86 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.1
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345668899999999999999999765
No 346
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.31 E-value=0.1 Score=53.18 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=22.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-+.|.||+|+|||||.++||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34567899999999999999999765
No 347
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.30 E-value=0.088 Score=50.82 Aligned_cols=27 Identities=37% Similarity=0.493 Sum_probs=22.8
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345667899999999999999999755
No 348
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.29 E-value=0.12 Score=43.89 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
-.|+|.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998753
No 349
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.25 E-value=0.1 Score=53.04 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-+.|.||+|+|||||.++||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34567899999999999999999765
No 350
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.23 E-value=0.11 Score=49.20 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcCC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~~ 351 (461)
+.-|+|.|++|+||||+++.|++.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355889999999999999999987644
No 351
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.20 E-value=0.13 Score=43.92 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
-.|+|.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 352
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.20 E-value=0.081 Score=50.82 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.0
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345668899999999999999999765
No 353
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.19 E-value=0.1 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=22.4
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-+.|.||+|+|||||.++||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34567899999999999999999755
No 354
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.15 E-value=0.13 Score=44.32 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|++|+|||+|...+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999975
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.14 E-value=0.1 Score=53.16 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=22.7
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-+.|.||+|+|||||.++||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 44667899999999999999999765
No 356
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.07 E-value=0.12 Score=44.31 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.7
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4599999999999999999874
No 357
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.06 E-value=0.11 Score=55.72 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=29.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC---CceEEecchhhh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLT 362 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~---~pfv~i~~s~l~ 362 (461)
+..|+|+|++|+||||+|+.|++.++ .++..++...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 35688999999999999999999774 455666655443
No 358
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.05 E-value=0.1 Score=46.19 Aligned_cols=21 Identities=43% Similarity=0.763 Sum_probs=19.4
Q ss_pred cEEEEccCCCchHHHHHHHHH
Q 012525 327 NVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|+|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 359
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.99 E-value=0.13 Score=43.84 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 360
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.94 E-value=0.13 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.-|+|.|++|+||||+++.|++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999877
No 361
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.92 E-value=0.13 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.9
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.|+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999986
No 362
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.91 E-value=0.48 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=18.6
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.++++..|+|+|||..+-..+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 6799999999999998766654
No 363
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.88 E-value=0.14 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999988753
No 364
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.87 E-value=0.13 Score=43.90 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999985
No 365
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.86 E-value=0.14 Score=44.15 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999975
No 366
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.85 E-value=0.14 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 367
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.84 E-value=0.14 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|..+|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999985
No 368
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.82 E-value=0.42 Score=48.97 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=15.6
Q ss_pred CcEEEEccCCCchHHHH
Q 012525 326 SNVLLMGPTGSGKTLLA 342 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLA 342 (461)
.++|+.+|+|+|||+++
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 67999999999999976
No 369
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.77 E-value=0.13 Score=43.73 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.8
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999975
No 370
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.77 E-value=0.15 Score=43.52 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999975
No 371
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.75 E-value=0.15 Score=43.33 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.9
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 372
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.67 E-value=0.092 Score=53.13 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=22.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-+.|.||+|+|||||.++||...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34567899999999999999999765
No 373
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.65 E-value=0.18 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..|.|.|+||+|||||+..|+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999998765
No 374
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.64 E-value=0.14 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.3
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.|+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999986
No 375
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.63 E-value=0.12 Score=53.10 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.0
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.-+.|.||+|+|||||.++|+..+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345678899999999999999999754
No 376
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=90.62 E-value=0.23 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=19.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.++|+.+|+|+|||..+..++..
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~ 45 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKD 45 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH
Confidence 67999999999999988777654
No 377
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.62 E-value=0.14 Score=43.70 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=19.0
Q ss_pred cEEEEccCCCchHHHHHHHHH
Q 012525 327 NVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|+|.|++|+|||+|...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 378
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.55 E-value=0.16 Score=43.23 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred cEEEEccCCCchHHHHHHHHH
Q 012525 327 NVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~ 347 (461)
.|+|.|++|+|||+|...+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
No 379
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.52 E-value=0.1 Score=48.63 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.-|.|.|+.|+||||+++.|+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345889999999999999999987
No 380
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.52 E-value=0.41 Score=49.69 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc----CCceEEecch
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~s 359 (461)
+..|+|.|++|+||||++-.||..+ +..+..+++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4678899999999999999998655 5555555554
No 381
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.51 E-value=0.16 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.|...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999863
No 382
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.46 E-value=0.16 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.2
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.|..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 5699999999999999999985
No 383
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.43 E-value=0.13 Score=49.88 Aligned_cols=25 Identities=36% Similarity=0.735 Sum_probs=22.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..+.|.||.|+|||||.++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999876
No 384
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.41 E-value=0.14 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.||.|+|||||+|.|+..+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3568999999999999999999754
No 385
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.35 E-value=0.16 Score=43.88 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.9
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999974
No 386
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.32 E-value=0.24 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...|+++.|++|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999997643
No 387
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.30 E-value=0.15 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=18.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..+++.||||||||+++..+...
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999987666543
No 388
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.29 E-value=0.14 Score=43.66 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.2
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
-.|+|.|++|+|||+|.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999998863
No 389
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.28 E-value=0.17 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|.+|+|||+|+..|+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 390
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.19 E-value=0.16 Score=43.72 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.++|...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999864
No 391
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=90.19 E-value=0.52 Score=51.70 Aligned_cols=21 Identities=38% Similarity=0.533 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 012525 324 EKSNVLLMGPTGSGKTLLAKT 344 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAra 344 (461)
..+.+|+.||+|+|||+.|-.
T Consensus 154 ~rk~vlv~apTGSGKT~~al~ 174 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQ 174 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456899999999999996533
No 392
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.17 E-value=0.17 Score=44.18 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..|+|.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 569999999999999999887654
No 393
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.15 E-value=0.17 Score=43.92 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
-.|+|.|++|+|||+|..+|...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999863
No 394
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.14 E-value=0.16 Score=43.58 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999975
No 395
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.13 E-value=0.16 Score=43.77 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|..+|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.12 E-value=0.15 Score=46.28 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..++|.|.+|+|||||+..|+..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998875
No 397
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.11 E-value=0.17 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|..+|...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.99 E-value=0.092 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-+.|.||+|+|||||.++||...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34567899999999999999999755
No 399
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.98 E-value=0.18 Score=44.49 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.2
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 5699999999999999999986
No 400
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.95 E-value=0.18 Score=43.53 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999753
No 401
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.93 E-value=0.091 Score=52.21 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=23.4
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||+|+|||||+++|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345678899999999999999999866
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.90 E-value=0.19 Score=43.79 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 403
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.89 E-value=0.12 Score=50.78 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.2
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+..+.|.||.|+|||||.++|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678899999999999999999765
No 404
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.87 E-value=0.6 Score=47.96 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=18.5
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.++++..|+|+|||..+-..+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~ 44 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICE 44 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHH
Confidence 5799999999999998766654
No 405
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.83 E-value=0.14 Score=53.13 Aligned_cols=34 Identities=38% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
+..|+|.|++|+||||++..||..+ +..++.+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4679999999999999999999866 234444444
No 406
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.82 E-value=0.19 Score=43.36 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5699999999999999999975
No 407
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.75 E-value=0.18 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999753
No 408
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.74 E-value=0.18 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 409
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.66 E-value=0.2 Score=43.38 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999975
No 410
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.66 E-value=0.79 Score=49.84 Aligned_cols=19 Identities=53% Similarity=0.690 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAK 343 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAr 343 (461)
..++++.+|+|+|||+++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4789999999999999883
No 411
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.65 E-value=0.29 Score=45.68 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=24.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc--CCceEEec
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV--NVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l--~~pfv~i~ 357 (461)
..+++.|.+|+||||++..||..+ +..+..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 457899999999999999999765 44444444
No 412
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.64 E-value=0.17 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.7
Q ss_pred cEEEEccCCCchHHHHHHHHHh
Q 012525 327 NVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 327 ~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.|+|.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999998753
No 413
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=89.62 E-value=0.69 Score=50.75 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=22.1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhcCCceEEecc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l~~pfv~i~~ 358 (461)
....+++.+|+|+|||+.+-...-.-+...+.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 45679999999999997654433333333343333
No 414
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.50 E-value=0.17 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.++|+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 415
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.50 E-value=0.21 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|..+|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 416
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.50 E-value=0.24 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..-++|+||.|+||||+.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 45688999999999999999874
No 417
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.47 E-value=0.2 Score=44.66 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999986
No 418
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.44 E-value=0.21 Score=49.11 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=25.9
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc---CCceEEec
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~ 357 (461)
..+.-++|.|+||+|||++|..+|..+ +.+++.++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 334568999999999999999998644 34555444
No 419
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.44 E-value=0.19 Score=44.19 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
...|+|.|++|+|||+|...|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
No 420
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=89.40 E-value=0.47 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHh
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.+..++|+||.|+||||+.|.|+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456889999999999999999864
No 421
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.38 E-value=0.24 Score=56.35 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
+.-++|+||.|+||||+.|.++-
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999954
No 422
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.36 E-value=0.21 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.3
Q ss_pred EEEEccCCCchHHHHHHHHHhcC
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
|.|.|..|+||||+++.|++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999883
No 423
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.33 E-value=0.3 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
..+.|.||+|+|||||.+.|+......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 568899999999999999999988543
No 424
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.31 E-value=0.22 Score=43.59 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|..+|...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999763
No 425
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.28 E-value=0.22 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999753
No 426
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.27 E-value=0.22 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999999975
No 427
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.22 E-value=0.31 Score=49.11 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHhcCCc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l~~p 352 (461)
..+.|.||+|+|||||.+.|+..+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 568899999999999999999988643
No 428
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.21 E-value=0.2 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...+.|.|+||+|||||.++|+..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568899999999999999999755
No 429
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.18 E-value=0.21 Score=45.49 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..|+|.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 430
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.15 E-value=0.26 Score=42.62 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999998753
No 431
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.05 E-value=0.23 Score=44.09 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56999999999999999999763
No 432
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.02 E-value=0.21 Score=52.68 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
+..++|.|++|+|||||++.++...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3668899999999999999998654
No 433
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.02 E-value=0.23 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999863
No 434
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.01 E-value=0.42 Score=45.52 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHH-HHHHHHHhc--CCceEEec
Q 012525 326 SNVLLMGPTGSGKTL-LAKTLARHV--NVPFVIAD 357 (461)
Q Consensus 326 ~~VLL~GPPGTGKTt-LAraLA~~l--~~pfv~i~ 357 (461)
.-.+++|+.|+|||| |.+.+.+.. +..++.+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 346799999999999 555554433 44444443
No 435
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.00 E-value=0.22 Score=43.22 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5699999999999999999984
No 436
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.97 E-value=0.2 Score=43.80 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999998754
No 437
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.94 E-value=0.24 Score=43.61 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5699999999999999999875
No 438
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.86 E-value=0.25 Score=43.72 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999999975
No 439
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.84 E-value=0.25 Score=43.69 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|++|+|||+|...|..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 35699999999999999999985
No 440
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.83 E-value=0.2 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 5699999999999999999975
No 441
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.83 E-value=0.23 Score=49.68 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=23.7
Q ss_pred ccccCCcEEEEccCCCchHHHHHHHHHh
Q 012525 321 VELEKSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 321 ~~~~~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+...+..|+|.|++|+|||++|.+|.+.
T Consensus 140 v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 140 VDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3445678999999999999999999874
No 442
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.81 E-value=0.25 Score=43.83 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.9
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 4699999999999999988875
No 443
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.79 E-value=0.22 Score=44.28 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999875
No 444
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.77 E-value=0.57 Score=50.31 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=18.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
.++|+..|+|+|||+.....+-.
T Consensus 60 ~d~lv~~pTGsGKTl~~~lpal~ 82 (591)
T 2v1x_A 60 KEVFLVMPTGGGKSLCYQLPALC 82 (591)
T ss_dssp CCEEEECCTTSCTTHHHHHHHHT
T ss_pred CCEEEEECCCChHHHHHHHHHHH
Confidence 56999999999999876655533
No 445
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.75 E-value=0.25 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|++|+|||+|...|..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 35799999999999999999975
No 446
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.74 E-value=0.23 Score=44.03 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...|...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56999999999999999999753
No 447
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.73 E-value=0.25 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
-.|+|.|++|+|||+|...+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999877753
No 448
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.71 E-value=0.22 Score=50.86 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.9
Q ss_pred ccCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 323 ~~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..+.-+.|.||+|+|||||.++|+...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 345667899999999999999999765
No 449
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.71 E-value=0.23 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
-.|+|.|++|+|||+|...|...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 569999999999999999998643
No 450
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.70 E-value=0.25 Score=43.64 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56999999999999999999864
No 451
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.69 E-value=0.13 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
...|+|.|++|+|||||.++|+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999988754
No 452
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.64 E-value=0.25 Score=45.41 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.3
Q ss_pred EEEEccCCCchHHHHHHHHHhc---CCceEE
Q 012525 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVI 355 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l---~~pfv~ 355 (461)
|.|.|.-|+||||.++.|++.+ +.+++.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 6799999999999999999877 445443
No 453
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=88.63 E-value=0.61 Score=52.04 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=18.4
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.++|+.||+|+|||.++-..+-
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999998865543
No 454
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.55 E-value=0.19 Score=43.47 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999863
No 455
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.55 E-value=1.9 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA 346 (461)
.++|++||+|+|||.+|-..|
T Consensus 625 ~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 625 MDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CEEEEECCCCTTTHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 479999999999999875444
No 456
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=88.44 E-value=0.3 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
+..++|+||.|+||||+.|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 567889999999999999999864
No 457
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.42 E-value=0.25 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
...|+|.|.+|+|||+|..+|...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 356999999999999999999863
No 458
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.39 E-value=0.25 Score=43.43 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.2
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|..+|..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 5699999999999999999976
No 459
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.35 E-value=0.27 Score=50.85 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=26.4
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc----CCceEEecc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADA 358 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l----~~pfv~i~~ 358 (461)
.+.-++|.|+||+|||+++..+|..+ +.+++.++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34568899999999999999998744 445555443
No 460
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.34 E-value=0.28 Score=43.04 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+.-.+|+||.|+|||++..+|.-.+
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999998655
No 461
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.32 E-value=0.26 Score=44.07 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999975
No 462
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.27 E-value=0.28 Score=43.76 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|..+|..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999999985
No 463
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.25 E-value=0.21 Score=49.90 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=23.5
Q ss_pred cccccCCcEEEEccCCCchHHHHHHHHH
Q 012525 320 NVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 320 ~~~~~~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
-++..+..|||.|++|+|||++|..|.+
T Consensus 142 ~v~~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 142 LLEVFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3445578899999999999999988865
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.16 E-value=0.26 Score=43.06 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999875
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.09 E-value=0.29 Score=43.98 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|...+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999863
No 466
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.05 E-value=0.19 Score=43.62 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA 346 (461)
...|+|.|++|+|||+|...+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3579999999999999998886
No 467
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.00 E-value=0.27 Score=55.00 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=19.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
...+++.||||||||+++..++..
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999987666553
No 468
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.99 E-value=0.28 Score=48.02 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=22.4
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
.+..+.|.|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45668899999999999999999765
No 469
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=87.86 E-value=0.28 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999864
No 470
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=87.83 E-value=0.25 Score=47.48 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.9
Q ss_pred EEEEccCCCchHHHHHHHHHhcCCceE
Q 012525 328 VLLMGPTGSGKTLLAKTLARHVNVPFV 354 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~l~~pfv 354 (461)
|.|+|.+|+||||+|+.|++.++.+++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 679999999999999999998876653
No 471
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.77 E-value=0.21 Score=44.00 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHh
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
...|+|.|++|+|||+|...|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998754
No 472
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.76 E-value=0.25 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.7
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 473
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.73 E-value=0.29 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56999999999999999998753
No 474
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.73 E-value=0.94 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHhc
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
..|.|.|+||+|||||..+|...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998754
No 475
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=87.68 E-value=1 Score=48.23 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=19.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
.++++.+|+|+|||+.+-.++.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 6799999999999998876664
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.66 E-value=0.3 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 477
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.66 E-value=0.29 Score=43.06 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|++|+|||+|...|..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999998864
No 478
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.58 E-value=0.31 Score=43.91 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999999875
No 479
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.58 E-value=0.25 Score=43.23 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...|..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999975
No 480
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.55 E-value=0.29 Score=42.97 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999984
No 481
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.54 E-value=0.3 Score=43.41 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.7
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.|..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 482
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=87.49 E-value=0.32 Score=43.16 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|++|+|||+|...+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35699999999999999998874
No 483
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.46 E-value=0.28 Score=43.22 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=20.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|.+.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999998754
No 484
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.44 E-value=0.28 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
..|+|.|++|+|||+|..+|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 485
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.39 E-value=0.19 Score=43.68 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=9.9
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998864
No 486
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.38 E-value=0.39 Score=48.39 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.0
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
...-++|.|+||+|||++|..+|..+ +.+++.++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34568899999999999999998754 455544433
No 487
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.24 E-value=0.32 Score=43.71 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|++|+|||+|...|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 35799999999999999999986
No 488
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.19 E-value=0.31 Score=43.65 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.8
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|.+.|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5699999999999999999874
No 489
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.11 E-value=0.27 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHh
Q 012525 326 SNVLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~~ 348 (461)
-.|+|.|++|+|||||.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999998753
No 490
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=87.06 E-value=1 Score=52.05 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=17.7
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA 346 (461)
.++|+.+|+|+|||+++...+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 679999999999999875444
No 491
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=87.04 E-value=0.91 Score=46.68 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.2
Q ss_pred cCCcEEEEccCCCchHH
Q 012525 324 EKSNVLLMGPTGSGKTL 340 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTt 340 (461)
....+++.+|+|+|||+
T Consensus 18 ~~~~~lv~a~TGsGKT~ 34 (451)
T 2jlq_A 18 KKRLTIMDLHPGAGKTK 34 (451)
T ss_dssp TTCEEEECCCTTSSCCT
T ss_pred cCCeEEEECCCCCCHhh
Confidence 34556999999999998
No 492
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.03 E-value=0.34 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|.+|+|||+|...+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999986
No 493
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=86.96 E-value=0.32 Score=48.39 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhc
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l 349 (461)
...|.|.|++|+||||++..|+..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998754
No 494
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.90 E-value=0.37 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHhcC
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~~l~ 350 (461)
..-+.|.||+|+|||||.++|+ ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4567899999999999999999 653
No 495
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.87 E-value=0.35 Score=43.37 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.0
Q ss_pred CcEEEEccCCCchHHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA~ 347 (461)
..|+|.|++|+|||+|...+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999985
No 496
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=86.81 E-value=0.29 Score=43.97 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=19.1
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 012525 326 SNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 326 ~~VLL~GPPGTGKTtLAraLA 346 (461)
..|+|.|++|+|||+|.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 497
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.76 E-value=0.44 Score=48.45 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=25.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHhc---CCceEEecc
Q 012525 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (461)
Q Consensus 324 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~pfv~i~~ 358 (461)
...|+++.|++|+|||++++.+...+ +..++.+|.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 35899999999999999987766433 444554443
No 498
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.72 E-value=0.39 Score=44.66 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLA 346 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA 346 (461)
...+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4779999999999998665553
No 499
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.71 E-value=0.32 Score=43.33 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 012525 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (461)
Q Consensus 325 ~~~VLL~GPPGTGKTtLAraLA~ 347 (461)
...|+|.|++|+|||+|...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 35699999999999999998863
No 500
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.65 E-value=0.3 Score=50.81 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.6
Q ss_pred EEEEccCCCchHHHHHHHHHh
Q 012525 328 VLLMGPTGSGKTLLAKTLARH 348 (461)
Q Consensus 328 VLL~GPPGTGKTtLAraLA~~ 348 (461)
+.|.|++|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999875
Done!