Query 012526
Match_columns 461
No_of_seqs 189 out of 2266
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 1.8E-54 6.1E-59 449.9 25.5 335 17-460 147-490 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 6.2E-54 2.1E-58 449.4 27.1 337 17-460 170-525 (536)
3 2d1s_A Luciferase, luciferin 4 100.0 1.3E-53 4.4E-58 448.0 26.9 329 24-460 191-533 (548)
4 3nyq_A Malonyl-COA ligase; A/B 100.0 4.7E-53 1.6E-57 439.4 29.0 338 18-460 148-498 (505)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.4E-53 1.2E-57 444.0 28.0 332 20-460 177-521 (539)
6 3rix_A Luciferase, luciferin 4 100.0 1.4E-53 4.7E-58 448.1 21.4 331 23-460 188-531 (550)
7 3g7s_A Long-chain-fatty-acid-- 100.0 3.9E-53 1.3E-57 444.6 24.5 338 20-460 174-532 (549)
8 3r44_A Fatty acyl COA syntheta 100.0 1.9E-52 6.5E-57 436.1 28.4 333 17-460 162-503 (517)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.7E-52 9.3E-57 433.7 29.0 332 20-460 148-494 (504)
10 1pg4_A Acetyl-COA synthetase; 100.0 8.9E-52 3E-56 442.4 28.5 339 19-460 250-611 (652)
11 3o83_A Peptide arylation enzym 100.0 1.5E-52 5.1E-57 439.6 21.5 332 20-460 186-530 (544)
12 1v25_A Long-chain-fatty-acid-C 100.0 1.7E-52 5.8E-57 438.9 21.6 331 21-460 172-526 (541)
13 3etc_A AMP-binding protein; ad 100.0 1.2E-51 4E-56 435.6 27.5 333 21-460 221-569 (580)
14 1amu_A GRSA, gramicidin synthe 100.0 1.5E-51 5.2E-56 433.4 27.2 323 21-460 178-519 (563)
15 3e7w_A D-alanine--poly(phospho 100.0 2E-51 7E-56 427.8 27.5 337 19-460 137-493 (511)
16 3fce_A D-alanine--poly(phospho 100.0 1.3E-51 4.3E-56 429.5 23.1 338 18-460 137-494 (512)
17 3c5e_A Acyl-coenzyme A synthet 100.0 5.7E-51 1.9E-55 429.7 28.0 334 20-460 201-552 (570)
18 3rg2_A Enterobactin synthase c 100.0 7.8E-51 2.7E-55 432.7 28.7 335 18-460 177-524 (617)
19 4gr5_A Non-ribosomal peptide s 100.0 1.1E-51 3.7E-56 435.5 21.4 330 20-460 209-561 (570)
20 3ivr_A Putative long-chain-fat 100.0 9.9E-52 3.4E-56 430.0 20.7 331 16-460 151-491 (509)
21 3ipl_A 2-succinylbenzoate--COA 100.0 6.1E-51 2.1E-55 423.2 25.8 321 20-460 158-487 (501)
22 4dg8_A PA1221; ANL superfamily 100.0 6.5E-51 2.2E-55 432.7 26.2 323 21-460 160-503 (620)
23 2v7b_A Benzoate-coenzyme A lig 100.0 4.2E-51 1.4E-55 427.2 23.9 336 19-460 177-522 (529)
24 1ry2_A Acetyl-coenzyme A synth 100.0 6.9E-51 2.4E-55 435.9 25.0 349 17-460 254-627 (663)
25 3tsy_A Fusion protein 4-coumar 100.0 7.9E-51 2.7E-55 454.1 21.8 337 17-460 217-572 (979)
26 3l8c_A D-alanine--poly(phospho 100.0 1.5E-50 5.2E-55 422.2 22.5 341 19-460 139-502 (521)
27 2vsq_A Surfactin synthetase su 100.0 5.4E-48 1.8E-52 442.0 31.6 327 20-460 602-950 (1304)
28 3kxw_A Saframycin MX1 syntheta 100.0 2.6E-48 8.9E-53 411.3 25.4 340 17-460 159-557 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 7.3E-48 2.5E-52 406.6 27.2 335 19-460 170-553 (576)
30 3ite_A SIDN siderophore synthe 100.0 6E-48 2.1E-52 406.3 20.5 341 20-460 170-533 (562)
31 4gs5_A Acyl-COA synthetase (AM 100.0 5.6E-48 1.9E-52 383.6 17.0 300 24-460 36-344 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 7.9E-45 2.7E-49 370.7 27.9 346 2-460 60-427 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 1.4E-44 4.9E-49 369.5 28.6 342 3-460 68-434 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 3.1E-44 1.1E-48 366.4 27.5 342 3-460 66-429 (437)
35 3t5a_A Long-chain-fatty-acid-- 100.0 1.3E-38 4.5E-43 328.4 17.6 249 17-349 175-480 (480)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.6E-30 5.6E-35 259.1 17.8 244 21-360 87-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.0 1.5E-09 5.3E-14 87.6 8.4 93 348-459 1-99 (109)
38 3gxs_A Phenylacetate-coenzyme 98.9 3.9E-09 1.3E-13 85.2 8.2 94 348-460 1-100 (109)
39 4b2g_A GH3-1 auxin conjugating 98.9 9.5E-09 3.2E-13 106.2 12.2 145 213-385 307-478 (609)
40 4epl_A Jasmonic acid-amido syn 98.8 1.9E-07 6.5E-12 96.1 19.7 138 222-385 314-473 (581)
41 4eql_A 4-substituted benzoates 98.8 3.6E-07 1.2E-11 94.3 20.3 145 213-385 302-466 (581)
42 3rix_A Luciferase, luciferin 4 52.9 47 0.0016 33.4 9.3 99 24-128 34-140 (550)
43 3g7s_A Long-chain-fatty-acid-- 51.1 1.7E+02 0.0058 29.2 13.1 101 23-126 32-140 (549)
44 3ni2_A 4-coumarate:COA ligase; 51.0 1E+02 0.0035 30.7 11.4 96 23-127 35-138 (536)
45 3ivr_A Putative long-chain-fat 49.4 92 0.0031 30.8 10.7 93 23-126 19-119 (509)
46 3t5a_A Long-chain-fatty-acid-- 47.0 1.4E+02 0.0049 28.9 11.6 99 23-126 37-148 (480)
47 1v25_A Long-chain-fatty-acid-C 43.3 1.9E+02 0.0064 28.8 12.0 96 23-125 31-134 (541)
48 2cvi_A 75AA long hypothetical 41.7 55 0.0019 23.4 5.7 34 364-397 15-48 (83)
49 3c5e_A Acyl-coenzyme A synthet 40.5 1.7E+02 0.006 29.3 11.3 96 23-124 56-160 (570)
50 2v7b_A Benzoate-coenzyme A lig 39.9 1.5E+02 0.0052 29.3 10.6 94 23-126 36-136 (529)
51 3r44_A Fatty acyl COA syntheta 39.4 2.1E+02 0.0072 28.2 11.6 93 23-124 29-129 (517)
52 3kxw_A Saframycin MX1 syntheta 38.4 2.1E+02 0.0071 28.6 11.5 96 23-125 24-130 (590)
53 2zbc_A 83AA long hypothetical 38.3 60 0.002 22.9 5.4 32 365-396 16-47 (83)
54 1amu_A GRSA, gramicidin synthe 37.6 2.4E+02 0.008 28.3 11.7 89 23-122 52-148 (563)
55 1t5h_X 4-chlorobenzoyl COA lig 37.5 1.9E+02 0.0064 28.4 10.7 91 23-122 15-115 (504)
56 3etc_A AMP-binding protein; ad 32.1 3.1E+02 0.011 27.5 11.5 92 23-120 69-168 (580)
57 4gr5_A Non-ribosomal peptide s 31.2 2.3E+02 0.008 28.3 10.4 87 23-120 88-182 (570)
58 2d1s_A Luciferase, luciferin 4 30.9 1.5E+02 0.0051 29.6 8.8 82 43-126 51-140 (548)
59 4fuq_A Malonyl COA synthetase; 28.7 1.7E+02 0.0059 28.7 8.7 79 44-124 28-114 (503)
60 2djw_A Probable transcriptiona 28.7 92 0.0031 22.6 5.1 36 364-399 15-50 (92)
61 3gqw_A Fatty acid AMP ligase; 27.5 2.7E+02 0.0093 27.6 10.1 81 43-125 48-143 (576)
62 2dbb_A Putative HTH-type trans 27.0 1.6E+02 0.0054 23.5 6.8 48 365-434 83-131 (151)
63 3o83_A Peptide arylation enzym 26.4 2.9E+02 0.0098 27.4 10.0 86 23-119 43-136 (544)
64 1ry2_A Acetyl-coenzyme A synth 24.1 4E+02 0.014 27.3 10.8 94 23-120 95-196 (663)
65 3tsy_A Fusion protein 4-coumar 23.1 1.9E+02 0.0064 31.4 8.3 93 23-124 74-174 (979)
66 3l8c_A D-alanine--poly(phospho 22.4 3E+02 0.01 26.9 9.2 74 44-119 29-110 (521)
67 3i4p_A Transcriptional regulat 22.2 1.8E+02 0.0061 23.7 6.2 49 364-434 79-127 (162)
68 1pg4_A Acetyl-COA synthetase; 21.7 4.9E+02 0.017 26.4 10.9 93 23-119 89-188 (652)
69 1mdb_A 2,3-dihydroxybenzoate-A 20.2 4.1E+02 0.014 26.2 9.7 86 23-119 38-131 (539)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.8e-54 Score=449.94 Aligned_cols=335 Identities=27% Similarity=0.403 Sum_probs=289.2
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEE
Q 012526 17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM 95 (461)
Q Consensus 17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~ 95 (461)
.......++|+++++|||||||.||+|+++|+++.+++......++++++|++++.+|++|.+++.. .+.++..|++++
T Consensus 147 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 226 (503)
T 4fuq_A 147 FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMI 226 (503)
T ss_dssp CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEE
T ss_pred cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEE
Confidence 3344567899999999999999999999999999999999889999999999999999999999765 456688888888
Q ss_pred Ec---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526 96 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 172 (461)
Q Consensus 96 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (461)
+. ++..+++.++ ++|++.++|+++..+++.....
T Consensus 227 ~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~----------------------------------------- 263 (503)
T 4fuq_A 227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLT----------------------------------------- 263 (503)
T ss_dssp ECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCS-----------------------------------------
T ss_pred EcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCcc-----------------------------------------
Confidence 74 6788888888 8999999999998886521100
Q ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccce
Q 012526 173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI 251 (461)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~ 251 (461)
...++++|.+++||+++++++ +.+.+.++.++++.||+||++..+
T Consensus 264 ----------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 309 (503)
T 4fuq_A 264 ----------------------------------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNT 309 (503)
T ss_dssp ----------------------------------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECB
T ss_pred ----------------------------------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCccc
Confidence 023445699999999998887 556667799999999999998776
Q ss_pred eccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526 252 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331 (461)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~ 331 (461)
..........+++|+|+++++++|+|+++++++++|+.|||+|+|++++.||+++|+.|.+.|..+|||+|||+|++++
T Consensus 310 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~- 388 (503)
T 4fuq_A 310 SNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE- 388 (503)
T ss_dssp CCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT-
T ss_pred ccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC-
Confidence 5444445567889999999999999988999999999999999999999999999999999998899999999999998
Q ss_pred CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR 407 (461)
Q Consensus 332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~ 407 (461)
||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.++|++.++
T Consensus 389 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~-------- 450 (503)
T 4fuq_A 389 ---------RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG-------- 450 (503)
T ss_dssp ---------TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--------
T ss_pred ---------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC--------
Confidence 8999999999999997 8999999999999999999999999987654 46678887643
Q ss_pred cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++|+.|+ .|++|.++++.|.+.|||+.
T Consensus 451 --------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 490 (503)
T 4fuq_A 451 --------ATIDEAQVLHGLDGQLAKFK-----MPKKVIFVDDLPRNTMGKVQ 490 (503)
T ss_dssp --------CCCCHHHHHHHHBTTBCGGG-----CCSEEEEESCCCBCTTSCBC
T ss_pred --------CCCCHHHHHHHHHhhcccCC-----CCCEEEEECCCCCCccccee
Confidence 45678899999999999998 66789999999999999984
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=6.2e-54 Score=449.35 Aligned_cols=337 Identities=28% Similarity=0.457 Sum_probs=290.0
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh----hcCCCCCcEEEEECChhhhHHHhh-hhhhhccC
Q 012526 17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRG 91 (461)
Q Consensus 17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G 91 (461)
.+.....++|+++|+|||||||.||+|+++|+++++.+..... .+++.++|++++.+|++|.+++.. .+.++..|
T Consensus 170 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G 249 (536)
T 3ni2_A 170 APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVG 249 (536)
T ss_dssp CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHT
T ss_pred cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcC
Confidence 3444567899999999999999999999999999887766543 456889999999999999999865 46678999
Q ss_pred eEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526 92 IELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 168 (461)
Q Consensus 92 ~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (461)
+++++. ++..+++.++++++|++.++|+++..+.+.....
T Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------- 292 (536)
T 3ni2_A 250 APILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD------------------------------------- 292 (536)
T ss_dssp CCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG-------------------------------------
T ss_pred CEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccc-------------------------------------
Confidence 999885 5788999999999999999999998876521110
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCC
Q 012526 169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTE 246 (461)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE 246 (461)
...+.++|.+++||+++++++ +.+.+.+ ++++++.||+||
T Consensus 293 --------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE 334 (536)
T 3ni2_A 293 --------------------------------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334 (536)
T ss_dssp --------------------------------------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGG
T ss_pred --------------------------------------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccc
Confidence 123456699999999999987 4555667 899999999999
Q ss_pred CccceeccC-----CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCccc
Q 012526 247 SSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 321 (461)
Q Consensus 247 ~~~~~~~~~-----~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~ 321 (461)
++.+++.+. ......+++|+|+++++++|+|++++.+++.|+.|||+|+|++++.||+++|+.|...|+.+|||+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~ 414 (536)
T 3ni2_A 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414 (536)
T ss_dssp GSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred cchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceE
Confidence 987665431 223456889999999999999998999999999999999999999999999999999998899999
Q ss_pred CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcC
Q 012526 322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD 397 (461)
Q Consensus 322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~ 397 (461)
|||+|++++ ||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.++ +.+.|+|+..
T Consensus 415 TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~ 483 (536)
T 3ni2_A 415 TGDIGYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKS 483 (536)
T ss_dssp EEEEEEECT----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred cccEEEEcC----------CceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEec
Confidence 999999998 8999999999999998 899999999999999999999999998754 3566888875
Q ss_pred hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
++ ...+.++++++++++|+.|+ .|++|.++++.|.+.|||+.
T Consensus 484 ~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi~ 525 (536)
T 3ni2_A 484 EK----------------SQATEDEIKQYISKQVIFYK-----RIKRVFFIEAIPKAPSGKIL 525 (536)
T ss_dssp TT----------------CCCCHHHHHHHHHTTSCGGG-----CCSEEEECSCCCBCTTSCBC
T ss_pred CC----------------CCCCHHHHHHHHHHhccCCc-----cccEEEEEecCCCCCCCCee
Confidence 43 45677899999999999998 66789999999999999974
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.3e-53 Score=447.96 Aligned_cols=329 Identities=26% Similarity=0.410 Sum_probs=286.2
Q ss_pred CCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh---cCCCCCcEEEEECChhhhHHHhhhh-hhhccCeEEEEc--
Q 012526 24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT-- 97 (461)
Q Consensus 24 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~-~~l~~G~~~~~~-- 97 (461)
++|+++++|||||||.||+|++||+++.+.+...... ++++++|++++.+|++|.+++...+ .++ .|+++++.
T Consensus 191 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~ 269 (548)
T 2d1s_A 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK 269 (548)
T ss_dssp TTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC
T ss_pred CCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC
Confidence 3899999999999999999999999999888877666 6888999999999999999987644 446 99999884
Q ss_pred -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526 98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 176 (461)
Q Consensus 98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (461)
++..+++.++++++|+++++|+++..+.+.....
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------- 304 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN--------------------------------------------- 304 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG---------------------------------------------
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccc---------------------------------------------
Confidence 5889999999999999999999998886521100
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccceecc
Q 012526 177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR 254 (461)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~~~ 254 (461)
...+.++|.+++||+++++++ +.+.+.+ +..+++.||+||++..++..
T Consensus 305 ------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 354 (548)
T 2d1s_A 305 ------------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354 (548)
T ss_dssp ------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred ------------------------------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeec
Confidence 023445699999999999887 5555667 68899999999998877765
Q ss_pred CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526 255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 334 (461)
Q Consensus 255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~ 334 (461)
.......+++|+|+++++++|+|+++++++++|+.|||+|+|++++.||+++|+.|.+.|+.+|||+|||+|++++
T Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~---- 430 (548)
T 2d1s_A 355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE---- 430 (548)
T ss_dssp CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----
Confidence 5445567899999999999999988899999999999999999999999999999999998899999999999998
Q ss_pred CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCC
Q 012526 335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI 410 (461)
Q Consensus 335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~ 410 (461)
+|.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|++.++
T Consensus 431 ------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~----------- 492 (548)
T 2d1s_A 431 ------EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG----------- 492 (548)
T ss_dssp ------TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-----------
T ss_pred ------CCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCC-----------
Confidence 8999999999999997 9999999999999999999999999998654 56688887643
Q ss_pred CcCCccccCcHHHHHHHHHHHHHHhccCCCccc-cEEEecCCCCCCCCccc
Q 012526 411 VHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++|+.|+ .++ +|.++++.|.+.|||+.
T Consensus 493 -----~~~~~~~l~~~~~~~l~~~~-----~p~~~i~~v~~lP~t~~GKi~ 533 (548)
T 2d1s_A 493 -----KNMTEKEVMDYVASQVSNAK-----RLRGGVRFVDEVPKGLTGKID 533 (548)
T ss_dssp -----CCCCHHHHHHHHHTTSCGGG-----SCTTCEEECSSCCBCTTSCBC
T ss_pred -----CCCCHHHHHHHHHHhccccc-----cccccEEEccCCCCCCcchhH
Confidence 34577899999999999997 555 89999999999999974
No 4
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4.7e-53 Score=439.40 Aligned_cols=338 Identities=26% Similarity=0.358 Sum_probs=280.2
Q ss_pred CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526 18 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY 96 (461)
Q Consensus 18 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~ 96 (461)
+.....++|+++++|||||||.||+|+++|+++.+.+..+...+++.++|++++.+|++|..++.. .+.++..|+++++
T Consensus 148 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 148 PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 344567899999999999999999999999999999999888899999999999999999999875 5667999999988
Q ss_pred c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526 97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 173 (461)
Q Consensus 97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (461)
. ++..+++.+ ++++|+++++|+++..+.+......
T Consensus 228 ~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------- 265 (505)
T 3nyq_A 228 LGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP----------------------------------------- 265 (505)
T ss_dssp CSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH-----------------------------------------
T ss_pred CCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc-----------------------------------------
Confidence 5 577788888 8899999999999998876432110
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526 174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 252 (461)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~ 252 (461)
.....+.++|.+++||+++++++ +.+.+.+++++++.||+||++..++
T Consensus 266 -------------------------------~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 314 (505)
T 3nyq_A 266 -------------------------------ELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS 314 (505)
T ss_dssp -------------------------------HHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred -------------------------------hhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccc
Confidence 00012233489999999999887 5555667999999999999998777
Q ss_pred ccCCCCCCccccccCCCCeEEEEEeCCCCCcCCC---CCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526 253 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329 (461)
Q Consensus 253 ~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~ 329 (461)
.........+++|+|+++++++|+|+ ++.+++. |+.|||+|+|++++.||+++|+.|.+.|..++||+|||+|+++
T Consensus 315 ~~~~~~~~~~~vG~p~~~~~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~ 393 (505)
T 3nyq_A 315 VRADGEPRAGTVGVPLPGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD 393 (505)
T ss_dssp CCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred cCCCCCCCCCCcccCCCCCEEEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence 66665666789999999999999995 4677665 8999999999999999999999999999889999999999999
Q ss_pred cCCCCCcccccCCeEEEeccc-cceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHH
Q 012526 330 PHHSRGRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMA 404 (461)
Q Consensus 330 ~~~~~~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~ 404 (461)
+ ||.++++||. ||+|++ +|++|+|.|||++|.+||+|.+|+|++.++ +.+.|+|++.++
T Consensus 394 ~----------dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~----- 457 (505)
T 3nyq_A 394 P----------DGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP----- 457 (505)
T ss_dssp T----------TSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST-----
T ss_pred C----------CccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC-----
Confidence 8 8999999997 589997 899999999999999999999999998865 357788887632
Q ss_pred HHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 405 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
....+.++++++++++|+.|+ .|+.|.++++.|.+.|||+.
T Consensus 458 ----------~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 498 (505)
T 3nyq_A 458 ----------AAPPALGTLADHVAARLAPHK-----RPRVVRYLDAVPRNDMGKIM 498 (505)
T ss_dssp ----------TSCCCHHHHHHHHHHHTCGGG-----SCSEEEECSCCCC-------
T ss_pred ----------CCCCCHHHHHHHHHhhCCCCc-----CccEEEEECCCCCCCCcCee
Confidence 134567899999999999998 66789999999999999984
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.4e-53 Score=443.95 Aligned_cols=332 Identities=19% Similarity=0.296 Sum_probs=284.8
Q ss_pred CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCeEEEEc
Q 012526 20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT 97 (461)
Q Consensus 20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~~~~~~ 97 (461)
....++|+++++|||||||.||||+++|+++.+.+......++++++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 3457899999999999999999999999999999888888889999999999999999999875 56679999999985
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 174 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (461)
++..+++.++++++|++.++|+++..+.+.....
T Consensus 257 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------- 293 (539)
T 1mdb_A 257 PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------------------------- 293 (539)
T ss_dssp SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------
T ss_pred CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------------------------
Confidence 5789999999999999999999998887643221
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceec
Q 012526 175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 253 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~ 253 (461)
...+.++|.+++||+++++++ +.+.+.+++++++.||+||++..+..
T Consensus 294 --------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 341 (539)
T 1mdb_A 294 --------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR 341 (539)
T ss_dssp --------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECC
T ss_pred --------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccC
Confidence 123455699999999999887 45556689999999999997543332
Q ss_pred cCC-CCCCccccccCCCC-eEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526 254 RRP-TCNVLGSVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331 (461)
Q Consensus 254 ~~~-~~~~~~~~G~~~~~-~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~ 331 (461)
... .....+++|+|+++ .+++|+| ++++++++|+.|||+|+||+++.||+++|+.|.+.|..+|||+|||+|++++
T Consensus 342 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~- 419 (539)
T 1mdb_A 342 LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR- 419 (539)
T ss_dssp TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT-
T ss_pred CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC-
Confidence 111 11234689999976 5899999 5688999999999999999999999999999999998899999999999998
Q ss_pred CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHH
Q 012526 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR 407 (461)
Q Consensus 332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~ 407 (461)
||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|++..
T Consensus 420 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~--------- 480 (539)
T 1mdb_A 420 ---------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD--------- 480 (539)
T ss_dssp ---------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS---------
T ss_pred ---------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC---------
Confidence 8999999999999996 9999999999999999999999999998654 4668888752
Q ss_pred cCCCcCCccccCcHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 408 LSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++ |+.|+ .|++|.++++.|.+.|||+.
T Consensus 481 --------~~~~~~~l~~~l~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 521 (539)
T 1mdb_A 481 --------EAPKAAELKAFLRERGLAAYK-----IPDRVEFVESFPQTGVGKVS 521 (539)
T ss_dssp --------SCCCHHHHHHHHHHTTCCGGG-----SCSEEEECSSCCBCTTSCBC
T ss_pred --------CCCCHHHHHHHHHhCCCCccc-----CCCEEEEeccCCCCCCcCEe
Confidence 235678999999997 99998 56789999999999999984
No 6
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.4e-53 Score=448.09 Aligned_cols=331 Identities=25% Similarity=0.363 Sum_probs=207.0
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh---cCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-- 97 (461)
.++|+++|+|||||||.||+|+++|+++...+...... +++.++|++++.+|++|.+++...+.++..|+++++.
T Consensus 188 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 267 (550)
T 3rix_A 188 RDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYR 267 (550)
T ss_dssp TTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence 45789999999999999999999999998887776554 5788999999999999999998888889999999985
Q ss_pred -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526 98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 176 (461)
Q Consensus 98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (461)
++..+++.++++++|++.++|+++..+.+.....
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------- 302 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID--------------------------------------------- 302 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG---------------------------------------------
T ss_pred CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc---------------------------------------------
Confidence 6889999999999999999999998886531110
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCe-eeeecccCCCccceecc
Q 012526 177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAAR 254 (461)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~-v~~~YG~tE~~~~~~~~ 254 (461)
...+.++|.+++||+++++++ +.+.+.++.. +++.||+||++..++..
T Consensus 303 ------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~ 352 (550)
T 3rix_A 303 ------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352 (550)
T ss_dssp ------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred ------------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecC
Confidence 123455699999999999887 5555677765 99999999999888877
Q ss_pred CCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526 255 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 334 (461)
Q Consensus 255 ~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~ 334 (461)
.......+++|+|.++++++|+|+++++++++|+.|||+|+|++++.||+++|+.|...|+.+|||+|||+|++++
T Consensus 353 ~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~---- 428 (550)
T 3rix_A 353 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE---- 428 (550)
T ss_dssp CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----
Confidence 7766778899999999999999988899999999999999999999999999999999998899999999999998
Q ss_pred CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHHcCC
Q 012526 335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSI 410 (461)
Q Consensus 335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~~~~ 410 (461)
||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++. +.++|++.++
T Consensus 429 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~----------- 490 (550)
T 3rix_A 429 ------DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG----------- 490 (550)
T ss_dssp ------TCCEEEC-------------------------------------------------------------------
T ss_pred ------CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC-----------
Confidence 8999999999999997 89999999999999999999999999987653 4566666543
Q ss_pred CcCCccccCcHHHHHHHHHHHHHHhccCCCccc-cEEEecCCCCCCCCccc
Q 012526 411 VHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++|+.++ .++ .|.++++.|.+.|||+.
T Consensus 491 -----~~~~~~~l~~~~~~~l~~~~-----~~~~~i~~v~~lP~t~~GKi~ 531 (550)
T 3rix_A 491 -----KTMTEKEIVDYVASQVTTAK-----KLRGGVVFVDEVPKGLTGKLD 531 (550)
T ss_dssp ---------------------------------------------------
T ss_pred -----CCCCHHHHHHHHHHhccccc-----ccCCceEEEeecCCCCCccee
Confidence 34567889999999999876 444 59999999999999974
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.9e-53 Score=444.58 Aligned_cols=338 Identities=24% Similarity=0.404 Sum_probs=267.4
Q ss_pred CCCCC-CCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526 20 ETIGS-DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT- 97 (461)
Q Consensus 20 ~~~~~-~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~- 97 (461)
....+ +|+++|+|||||||.||||+++|+++.+++..+...+++.++|++++.+|++|.+++...+.++..|+++++.
T Consensus 174 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 253 (549)
T 3g7s_A 174 VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG 253 (549)
T ss_dssp CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES
T ss_pred ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC
Confidence 33444 8999999999999999999999999999998888889999999999999999999988877788999999884
Q ss_pred --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526 98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 175 (461)
Q Consensus 98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (461)
++..+++.++++++|+++++|+++..+.+.......
T Consensus 254 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------ 291 (549)
T 3g7s_A 254 MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------------------------------------ 291 (549)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc------------------------------------------
Confidence 688999999999999999999999998775433210
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHH----hC---CeeeeecccCCC
Q 012526 176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA----IG---VKVQVGYGLTES 247 (461)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~----~~---~~v~~~YG~tE~ 247 (461)
...+..+|.+++||+++++++ +.+.+. ++ +++++.||+||+
T Consensus 292 -------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 340 (549)
T 3g7s_A 292 -------------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA 340 (549)
T ss_dssp -------------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGG
T ss_pred -------------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecccc
Confidence 013345699999999999877 444444 56 899999999999
Q ss_pred ccceeccCCCC-CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccC--CCC--cccC
Q 012526 248 SPVIAARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNT 322 (461)
Q Consensus 248 ~~~~~~~~~~~-~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~--~~~--~~~T 322 (461)
+.+++...... ...+++|+|+++++++|+|++++++++.|+.|||+|+||+++.||+++|+.+.+.|. .+| ||+|
T Consensus 341 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~T 420 (549)
T 3g7s_A 341 CPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRT 420 (549)
T ss_dssp SSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEE
T ss_pred chhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEcc
Confidence 98877655433 456789999999999999988899999999999999999999999999999999883 567 9999
Q ss_pred CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcCh
Q 012526 323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDK 398 (461)
Q Consensus 323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~ 398 (461)
||+|++++ ||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|++.+
T Consensus 421 GDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~ 489 (549)
T 3g7s_A 421 GDVGFIDE----------EGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKP 489 (549)
T ss_dssp EEEEEECT----------TSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECS
T ss_pred CcEEEEcC----------CceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECC
Confidence 99999998 8999999999999997 8999999999999999999999999998765 4568888764
Q ss_pred HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 399 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
+. ....+.++++++++++|+.|+ .|+.|.++++.|.+.|||+.
T Consensus 490 ~~--------------~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 532 (549)
T 3g7s_A 490 EY--------------RGKVDEEDIIEWVRERISGYK-----RVREVEFVEELPRTASGKLL 532 (549)
T ss_dssp TT--------------TTSCCHHHHHHHHHTTCC----------CCCCEEEECC--------
T ss_pred Cc--------------cCcCCHHHHHHHHHHhccCcc-----cceEEEEeccCCCCCCcCEe
Confidence 30 134678999999999999998 55689999999999999984
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.9e-52 Score=436.14 Aligned_cols=333 Identities=25% Similarity=0.359 Sum_probs=284.6
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE
Q 012526 17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY 96 (461)
Q Consensus 17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~ 96 (461)
.+.....++|+++|+|||||||.||+|++||+++.+.+..+...+++.++|++++.+|++|.+++...+.++..|+++++
T Consensus 162 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~ 241 (517)
T 3r44_A 162 EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLIS 241 (517)
T ss_dssp CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEE
Confidence 34455678999999999999999999999999999999998888999999999999999999999876666668999888
Q ss_pred c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526 97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 173 (461)
Q Consensus 97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (461)
. ++..+++.++++++|++.++|+++..+.+.....
T Consensus 242 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------ 279 (517)
T 3r44_A 242 MPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------------------------ 279 (517)
T ss_dssp CSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------------------------
T ss_pred eCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------------------------
Confidence 5 6889999999999999999999998887642211
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceec
Q 012526 174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAA 253 (461)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 253 (461)
...+.++|.+++||+++++++.+.+...++++++.||+||++..++.
T Consensus 280 ---------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 326 (517)
T 3r44_A 280 ---------------------------------ELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTL 326 (517)
T ss_dssp ---------------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEE
T ss_pred ---------------------------------cCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceee
Confidence 12344569999999999999866666669999999999999887665
Q ss_pred cCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526 254 RRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331 (461)
Q Consensus 254 ~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~ 331 (461)
.... ....+++|+|.++++++++| +++.+++.| .|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++++
T Consensus 327 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~- 402 (517)
T 3r44_A 327 LLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDD- 402 (517)
T ss_dssp ECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECT-
T ss_pred cCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcC-
Confidence 4432 34567899999999999999 567888888 89999999999999999999999999 689999999999998
Q ss_pred CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHH
Q 012526 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR 407 (461)
Q Consensus 332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~ 407 (461)
||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++. +.++++.. +
T Consensus 403 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~-~-------- 463 (517)
T 3r44_A 403 ---------EGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD-Q-------- 463 (517)
T ss_dssp ---------TSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC-T--------
T ss_pred ---------CeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECC-C--------
Confidence 8999999999999997 89999999999999999999999999986543 34555322 1
Q ss_pred cCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 408 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++|+.|+ .|+.|.++++.|.+.|||+.
T Consensus 464 --------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 503 (517)
T 3r44_A 464 --------NEVSEQQIVEYCGTRLARYK-----LPKKVIFAEAIPRNPTGKIL 503 (517)
T ss_dssp --------TTCCHHHHHHHHHHHSCGGG-----SCSEEEECSCCCBCTTCCBC
T ss_pred --------CCCCHHHHHHHHHHhCCCCC-----CCCEEEEECCCCCCCCcCcc
Confidence 34677999999999999998 66789999999999999984
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.7e-52 Score=433.68 Aligned_cols=332 Identities=21% Similarity=0.283 Sum_probs=281.1
Q ss_pred CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCC--CCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526 20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY 96 (461)
Q Consensus 20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~ 96 (461)
....++|+++++|||||||.||+|+++|+++.+.+..+...+++ .++|++++.+|++|.+++.. .+.++..|+++++
T Consensus 148 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp CCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 44578999999999999999999999999999988888777888 88999999999999999854 5667899999998
Q ss_pred c---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526 97 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 173 (461)
Q Consensus 97 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (461)
. ++..+++.++++++|+++++|+++..+.+......
T Consensus 228 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------- 266 (504)
T 1t5h_X 228 VEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------------------------------- 266 (504)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT-----------------------------------------
T ss_pred CCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc-----------------------------------------
Confidence 5 57889999999999999999999988876421100
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCcccee
Q 012526 174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 252 (461)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~ 252 (461)
....+.++|.+++||+++++++ +.+.+.++..+++.||+||++....
T Consensus 267 --------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 314 (504)
T 1t5h_X 267 --------------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLY 314 (504)
T ss_dssp --------------------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEE
T ss_pred --------------------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccccc
Confidence 0013455699999999999887 5556667999999999999943322
Q ss_pred ccCCCCCCccccccCCCCeEEEEEeCCCC--CcCCCCCceEEEEe-cCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526 253 ARRPTCNVLGSVGHPINHTEIKIVDAETN--EVLPAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329 (461)
Q Consensus 253 ~~~~~~~~~~~~G~~~~~~~i~i~d~~~~--~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~ 329 (461)
.. ....+++|.|.++++++++|.+++ ++++.|+.|||+|+ |++++.||+++|+.|.+.| .+|||+|||+|+++
T Consensus 315 ~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~ 390 (504)
T 1t5h_X 315 MR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWT 390 (504)
T ss_dssp EE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEEC
T ss_pred cc---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEEC
Confidence 21 344578999999999999995432 88999999999999 8999999999999999999 68999999999999
Q ss_pred cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHH
Q 012526 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 405 (461)
Q Consensus 330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~ 405 (461)
+ ||.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|+++++
T Consensus 391 ~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~------ 453 (504)
T 1t5h_X 391 P----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG------ 453 (504)
T ss_dssp T----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT------
T ss_pred C----------CceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC------
Confidence 8 8999999999999997 9999999999999999999999999998654 57788887643
Q ss_pred HHcCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 406 KRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 406 ~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.+++++++++ +|+.|+ .|++|.++++.|.+.|||+.
T Consensus 454 ----------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 494 (504)
T 1t5h_X 454 ----------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKVL 494 (504)
T ss_dssp ----------CCCCHHHHHHHHHTSSCCGGG-----SCSEEEECSCCCBCTTSCBC
T ss_pred ----------cCcCHHHHHHHHhhccCcccc-----cceEEEEhhhCCCCCCCCEe
Confidence 34577899999998 899997 66799999999999999984
No 10
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=8.9e-52 Score=442.36 Aligned_cols=339 Identities=17% Similarity=0.177 Sum_probs=282.9
Q ss_pred CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHH-HHhhhcCCCCCcEEEEECChhhhHHH-hhhhhhhccCeEEEE
Q 012526 19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYER-ACGYFIFSRGIELMY 96 (461)
Q Consensus 19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~~~-~~~~~~l~~G~~~~~ 96 (461)
.....++|+++|+|||||||.||||+++|++++..+. .+...+++.++|++++.+|++|+++. ...+.++..|+++++
T Consensus 250 ~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 3445689999999999999999999999999877653 45567889999999999999999998 456778999999987
Q ss_pred c-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCC
Q 012526 97 T-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ 169 (461)
Q Consensus 97 ~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (461)
. ++..+++.++++++|+++++|+++..+.+......
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------------------- 372 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI------------------------------------- 372 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT-------------------------------------
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc-------------------------------------
Confidence 4 46789999999999999999999988865321100
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC---CeeeeecccC
Q 012526 170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLT 245 (461)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~---~~v~~~YG~t 245 (461)
....+.++|.+++||+++++++ +.+.+.++ +++++.||+|
T Consensus 373 ------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 416 (652)
T 1pg4_A 373 ------------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416 (652)
T ss_dssp ------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred ------------------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCc
Confidence 0023456799999999999887 45556677 8999999999
Q ss_pred CCccceeccCCC--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec--CCccccccCCchhhccccC--CCCc
Q 012526 246 ESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGW 319 (461)
Q Consensus 246 E~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~f~--~~~~ 319 (461)
|++..++...+. ....+++|+|+++++++|+| +++++++.|+.|||+|+| |+++.|||++|+.+.+.|. .+||
T Consensus 417 E~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~ 495 (652)
T 1pg4_A 417 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 (652)
T ss_dssp GGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred ccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence 998766654432 34568999999999999999 458899999999999999 7999999999998877763 3789
Q ss_pred ccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEE
Q 012526 320 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIV 395 (461)
Q Consensus 320 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv 395 (461)
|+|||+|++++ ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.++ +.+.|+|+
T Consensus 496 y~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv 564 (652)
T 1pg4_A 496 YFSGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVT 564 (652)
T ss_dssp EEEEEEEEECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred EECCcEEEEcC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEE
Confidence 99999999998 8999999999999998 899999999999999999999999999754 35778898
Q ss_pred cChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 396 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
++++. .......++|+++++++|+.|+ .++.|.++++.|.+.|||+.
T Consensus 565 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~T~sGKi~ 611 (652)
T 1pg4_A 565 LNHGE-------------EPSPELYAEVRNWVRKEIGPLA-----TPDVLHWTDSLPKTRSGKIM 611 (652)
T ss_dssp ECTTC-------------CCCHHHHHHHHHHHHHHTCGGG-----CCSEEEECSCCCBCTTSCBC
T ss_pred ECCCC-------------CCCHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCCccch
Confidence 86430 0011124788999999999988 66789999999999999984
No 11
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.5e-52 Score=439.60 Aligned_cols=332 Identities=23% Similarity=0.325 Sum_probs=210.7
Q ss_pred CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCeEEEEc
Q 012526 20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT 97 (461)
Q Consensus 20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~~~~~~ 97 (461)
....++|+++++|||||||.||+|+++|+++.+.+......+++.++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4567899999999999999999999999999999999989999999999999999999999875 56678999999985
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 174 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (461)
++..+++.++++++|++.++|+++..+++.....
T Consensus 266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------- 302 (544)
T 3o83_A 266 PNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY------------------------------------------- 302 (544)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT-------------------------------------------
T ss_pred CCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc-------------------------------------------
Confidence 5788999999999999999999998887643221
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceec
Q 012526 175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 253 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~ 253 (461)
...+.++|.+++||+++++++ +.+.+.+++++++.||+||++..+..
T Consensus 303 --------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 350 (544)
T 3o83_A 303 --------------------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTR 350 (544)
T ss_dssp --------------------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECC
T ss_pred --------------------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeec
Confidence 123445699999999999887 45556679999999999998755443
Q ss_pred cCCC-CCCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526 254 RRPT-CNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331 (461)
Q Consensus 254 ~~~~-~~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~ 331 (461)
.... ....+++|+|+ ++++++|+| ++++++++|+.|||+|+||+++.||+++|+.+.+.|+.+|||+|||+|++++
T Consensus 351 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~- 428 (544)
T 3o83_A 351 LDDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP- 428 (544)
T ss_dssp TTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT-
T ss_pred CCCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC-
Confidence 2221 12346789996 899999999 6788999999999999999999999999999999998899999999999998
Q ss_pred CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHH
Q 012526 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR 407 (461)
Q Consensus 332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~ 407 (461)
||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++. +.|+|+..+
T Consensus 429 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~--------- 489 (544)
T 3o83_A 429 ---------DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN--------- 489 (544)
T ss_dssp ---------TSCEEEEEEEC------------------------------------------------------------
T ss_pred ---------CCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC---------
Confidence 8999999999999996 99999999999999999999999999987653 456666543
Q ss_pred cCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 408 LSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.+++++++++ +|+.|+ .+++|.++++.|.+.|||+.
T Consensus 490 --------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~ 530 (544)
T 3o83_A 490 --------PELKAVVLRRHLMELGIAQYK-----LPDQIKLIESLPLTAVGKVD 530 (544)
T ss_dssp ------------------------------------------------------
T ss_pred --------CCCCHHHHHHHHHhCCCCccc-----CCcEEEEeccCCCCCCCCCc
Confidence 23466788899998 799998 56789999999999999974
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.7e-52 Score=438.88 Aligned_cols=331 Identities=26% Similarity=0.395 Sum_probs=246.0
Q ss_pred CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHH--HhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526 21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS--LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT- 97 (461)
Q Consensus 21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~- 97 (461)
...++++++++|||||||.||||++||+++...... ....++++++|++++.+|++|.+++...+.++..|+++++.
T Consensus 172 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~ 251 (541)
T 1v25_A 172 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPG 251 (541)
T ss_dssp CCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECT
T ss_pred cCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeC
Confidence 456789999999999999999999999999877655 33556788999999999999999987777788999999884
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 174 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (461)
++..+++.++++++|++.++|+++..+++......
T Consensus 252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------ 289 (541)
T 1v25_A 252 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG------------------------------------------ 289 (541)
T ss_dssp TCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT------------------------------------------
T ss_pred CCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC------------------------------------------
Confidence 57889999999999999999999998877533211
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceecc
Q 012526 175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 254 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 254 (461)
..+..+|.+++||+++++++.+.++.+++++++.||+||++.+++..
T Consensus 290 ---------------------------------~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~ 336 (541)
T 1v25_A 290 ---------------------------------HRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQN 336 (541)
T ss_dssp ---------------------------------CCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEEC
T ss_pred ---------------------------------CcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecc
Confidence 23455699999999999987555577899999999999998877665
Q ss_pred CCCC-----------CCccccccCCCCeEEEEEeCCCCCcCCC--CCceEEEEecCCccccccCCchhhccccCCCCccc
Q 012526 255 RPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 321 (461)
Q Consensus 255 ~~~~-----------~~~~~~G~~~~~~~i~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~ 321 (461)
.... ...+++|+|+++++++|+|+ ++++++. ++.|||+|+||+++.||+++|+.|++.|..+|||+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~ 415 (541)
T 1v25_A 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFR 415 (541)
T ss_dssp CCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEE
T ss_pred cccccccccCccccccccCCCCCcCCCcEEEEECC-CCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeE
Confidence 4321 12468999999999999995 5677774 36899999999999999999999999998799999
Q ss_pred CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcC
Q 012526 322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD 397 (461)
Q Consensus 322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~ 397 (461)
|||+|++++ ||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|++.
T Consensus 416 TGDlg~~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~ 484 (541)
T 1v25_A 416 TGDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR 484 (541)
T ss_dssp EEEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---
T ss_pred cCCEEEEcC----------CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC
Confidence 999999998 8999999999999997 9999999999999999999999999998654 466777654
Q ss_pred hHHHHHHHHHcCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 398 KEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
. ...+.+++++++++ +|+.|+ .++.|.++++.|.+.|||+.
T Consensus 485 ~-----------------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 526 (541)
T 1v25_A 485 G-----------------EKPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKFL 526 (541)
T ss_dssp ---------------------------------CCCTTT-----SCSBC--------------C
T ss_pred C-----------------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeCCCCCCCccCee
Confidence 1 23456788888888 788887 66788999999999999984
No 13
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.2e-51 Score=435.64 Aligned_cols=333 Identities=22% Similarity=0.272 Sum_probs=275.5
Q ss_pred CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526 21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-- 97 (461)
Q Consensus 21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-- 97 (461)
...++|+++++|||||||.||+|.++|.+++..+......+++.+++++++..|+.|..+.+. .+.++..|+++++.
T Consensus 221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 300 (580)
T 3etc_A 221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY 300 (580)
T ss_dssp SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 467899999999999999999999999999888777777788999999999999999888765 55668889988774
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 174 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (461)
++..+++.++++++|++.++|+++..|.+...
T Consensus 301 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------------------------------------- 335 (580)
T 3etc_A 301 DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL--------------------------------------------- 335 (580)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---------------------------------------------
T ss_pred CCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc---------------------------------------------
Confidence 57889999999999999999999988765200
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccceec
Q 012526 175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 253 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~~~ 253 (461)
....+.++|.+++||+++++++ +++.+.+++++++.||+||++..++.
T Consensus 336 -------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 384 (580)
T 3etc_A 336 -------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384 (580)
T ss_dssp ----------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred -------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence 0023455699999999999887 55666689999999999999887776
Q ss_pred cCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEec-----CCccccccCCchhhccccCCCCcccCCceEee
Q 012526 254 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 328 (461)
Q Consensus 254 ~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~-----~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~ 328 (461)
.+.....++++|+|+++++++|+|+ +++++++|+.|||+|++ ++++.||+++|+.|.+.| .+|||+|||+|++
T Consensus 385 ~~~~~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~ 462 (580)
T 3etc_A 385 FPWMEPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM 462 (580)
T ss_dssp CTTSCCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEE
T ss_pred CCCCCCCCCccccCCCCCEEEEECC-CCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEE
Confidence 6655667889999999999999995 58899999999999997 789999999999999999 5899999999999
Q ss_pred ccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHH
Q 012526 329 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA 404 (461)
Q Consensus 329 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~ 404 (461)
++ ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|++.++
T Consensus 463 d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~----- 526 (580)
T 3etc_A 463 DE----------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKD----- 526 (580)
T ss_dssp CT----------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-----
T ss_pred CC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCC-----
Confidence 98 8999999999999998 7999999999999999999999999998654 45678887643
Q ss_pred HHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 405 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
........++|+++++++|+.|+ .|+.|.++++.|.+.|||+.
T Consensus 527 --------~~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~sGKi~ 569 (580)
T 3etc_A 527 --------YTPSDSLKNELQDHVKNVTAPYK-----YPRIIEFVPELPKTISGKIR 569 (580)
T ss_dssp --------CCCCHHHHHHHHHHHHHHSCGGG-----CCSEEEEECC----------
T ss_pred --------CCCCHHHHHHHHHHHHhhCCCcc-----CCeEEEEeCCCCCCCCcCCc
Confidence 00112234688899999998887 66789999999999999974
No 14
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.5e-51 Score=433.42 Aligned_cols=323 Identities=21% Similarity=0.242 Sum_probs=273.8
Q ss_pred CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526 21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 97 (461)
Q Consensus 21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--- 97 (461)
...++|+++++|||||||.||||++||+++.+.+......++++++|++++++|++|.+++...+.++..|+++++.
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD 257 (563)
T ss_dssp CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence 45678999999999999999999999999998888888888999999999999999999988778889999999884
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 174 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (461)
++..+++.++++++|++.++|+++..+..
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------------------------------------------------ 289 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPPTYVVHLDP------------------------------------------------ 289 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------------------------------------------------
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------------------------------------------------
Confidence 46778999999999999999998755421
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceecc
Q 012526 175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 254 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 254 (461)
..+.++|.+++||+++++++.+.+.. .+.+++.||+||++..++..
T Consensus 290 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 290 ---------------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTW 335 (563)
T ss_dssp ---------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEE
T ss_pred ---------------------------------cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheee
Confidence 12334589999999999887554433 47899999999998766543
Q ss_pred CCCC---CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC------CCcccCCce
Q 012526 255 RPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDI 325 (461)
Q Consensus 255 ~~~~---~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~------~~~~~TGDl 325 (461)
.... ....++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.. ++||+|||+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence 3221 2456899999999999999 56889999999999999999999999999999988843 469999999
Q ss_pred EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHH
Q 012526 326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 401 (461)
Q Consensus 326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~ 401 (461)
|++++ ||+++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|++.
T Consensus 415 g~~d~----------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~---- 479 (563)
T 1amu_A 415 ARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE---- 479 (563)
T ss_dssp EEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES----
T ss_pred EEEcC----------CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeC----
Confidence 99998 8999999999999997 9999999999999999999999999988643 567788764
Q ss_pred HHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 402 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++|+.|+ .+++|.++++.|.+.|||+.
T Consensus 480 --------------~~~~~~~l~~~l~~~L~~y~-----~P~~i~~v~~lP~t~~GKi~ 519 (563)
T 1amu_A 480 --------------KHIPLEQLRQFSSEELPTYM-----IPSYFIQLDKMPLTSNGKID 519 (563)
T ss_dssp --------------SCCCHHHHHHHHHHHSCGGG-----SCSEEEECSSCCBCTTSSBC
T ss_pred --------------CCCCHHHHHHHHHhhCchhh-----CCcEEEEecccCCCCCcChh
Confidence 23567899999999999998 66789999999999999984
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2e-51 Score=427.81 Aligned_cols=337 Identities=24% Similarity=0.266 Sum_probs=282.2
Q ss_pred CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526 19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT- 97 (461)
Q Consensus 19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~- 97 (461)
.....++|+++++|||||||.||+|++||+++.+.+......+++.++|++++.+|++|.+++...+.++..|+++++.
T Consensus 137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 216 (511)
T 3e7w_A 137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT 216 (511)
T ss_dssp GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 3445788999999999999999999999999999999888889999999999999999999988888889999999884
Q ss_pred -----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526 98 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 172 (461)
Q Consensus 98 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (461)
++..+++.++++++|++.++|+++..++.....
T Consensus 217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------------ 254 (511)
T 3e7w_A 217 KDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF------------------------------------------ 254 (511)
T ss_dssp HHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC------------------------------------------
T ss_pred hhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc------------------------------------------
Confidence 467899999999999999999999877642110
Q ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccc
Q 012526 173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPV 250 (461)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~ 250 (461)
....+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++..
T Consensus 255 ---------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 301 (511)
T 3e7w_A 255 ---------------------------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVA 301 (511)
T ss_dssp ---------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSC
T ss_pred ---------------------------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheee
Confidence 0123455689999999999887 5556667 8999999999999877
Q ss_pred eeccCC-----CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC-CC--cccC
Q 012526 251 IAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNT 322 (461)
Q Consensus 251 ~~~~~~-----~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~-~~--~~~T 322 (461)
++.... ......++|+|.++++++|+|+ +++++++|+.|||+|+||+++.||+++|+.+.+.|.. ++ ||+|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~T 380 (511)
T 3e7w_A 302 VTSVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRT 380 (511)
T ss_dssp SEEEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEE
T ss_pred eeEEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeC
Confidence 654322 1234467999999999999994 5899999999999999999999999999999998832 23 7999
Q ss_pred CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcCh
Q 012526 323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDK 398 (461)
Q Consensus 323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~ 398 (461)
||+|++ + ||.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|++++.+
T Consensus 381 GDlg~~-~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~ 448 (511)
T 3e7w_A 381 GDAGFI-Q----------DGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEE 448 (511)
T ss_dssp EEEEEE-E----------TTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECC
T ss_pred CCeEEc-c----------CCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecc
Confidence 999998 5 7999999999999998 8999999999999999999999999987543 5778888764
Q ss_pred HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 399 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
+. ........++++++++++|+.|+ .|++|.++++.|.+.|||+.
T Consensus 449 ~~------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~v~~lP~t~~GKi~ 493 (511)
T 3e7w_A 449 HE------------FEKEFQLTSAIKKELAASLPAYM-----IPRKFIYQDHIQMTANGKID 493 (511)
T ss_dssp CC------------CSSHHHHHHHHHHHHHHHSCGGG-----SCSEEEECSCCCBCTTSCBC
T ss_pred cc------------ccchhhHHHHHHHHHHhhCchhh-----CCeeEEEeccCCCCCCcCcc
Confidence 20 00001123678888888888887 66789999999999999984
No 16
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-51 Score=429.51 Aligned_cols=338 Identities=22% Similarity=0.235 Sum_probs=279.8
Q ss_pred CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc
Q 012526 18 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT 97 (461)
Q Consensus 18 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~ 97 (461)
+.....++|+++++|||||||.||+|++||+++.+.+......+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 137 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp GGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred ccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 34456789999999999999999999999999999998888889999999999999999999988888889999999884
Q ss_pred ------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526 98 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 171 (461)
Q Consensus 98 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (461)
++..+++.++++++|++.++|+++..++......
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------- 256 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS---------------------------------------- 256 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCS----------------------------------------
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcccc----------------------------------------
Confidence 4678999999999999999999997775421100
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcc
Q 012526 172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP 249 (461)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~ 249 (461)
...+.++|.+++||+++++++ +.+.+.+ ++++++.||+||++.
T Consensus 257 -----------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~ 301 (512)
T 3fce_A 257 -----------------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATV 301 (512)
T ss_dssp -----------------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred -----------------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhh
Confidence 123455699999999999887 5566677 899999999999988
Q ss_pred ceeccCCCC-----CCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhcccc---CCCCccc
Q 012526 250 VIAARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLN 321 (461)
Q Consensus 250 ~~~~~~~~~-----~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f---~~~~~~~ 321 (461)
.++...... ....++|+|.++++++++| +++.++++|+.|||+|+||+++.||+++|+.+.+.| +.++||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~ 380 (512)
T 3fce_A 302 AVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYK 380 (512)
T ss_dssp CSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred heeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEe
Confidence 765433221 2456789999999999999 678999999999999999999999999999999988 3467999
Q ss_pred CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcC
Q 012526 322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD 397 (461)
Q Consensus 322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~ 397 (461)
|||+|++ + ||.++|.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++ +.+.|+|++.
T Consensus 381 TGDlg~~-~----------dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~ 448 (512)
T 3fce_A 381 TGDAGYV-E----------NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPG 448 (512)
T ss_dssp EEEEEEE-E----------TTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCceEEe-c----------CCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecC
Confidence 9999998 6 7999999999999998 999999999999999999999999997654 3567888876
Q ss_pred hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
++. ........++++++++++|+.|+ .+++|.++++.|.+.|||+.
T Consensus 449 ~~~------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~~~~lP~t~~GKi~ 494 (512)
T 3fce_A 449 EHS------------FEKEFKLTSAIKKELNERLPNYM-----IPRKFMYQSSIPMTPNGKVD 494 (512)
T ss_dssp SCC------------CSSHHHHHHHHHHHHHTTSCGGG-----SCSEEEECSCCCBCTTSSBC
T ss_pred Ccc------------ccchhhhHHHHHHHHHhhCchhc-----CCeEEEEecccCCCCCcChH
Confidence 420 00001123578888888888887 66789999999999999984
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=5.7e-51 Score=429.69 Aligned_cols=334 Identities=19% Similarity=0.246 Sum_probs=279.8
Q ss_pred CCCCCCCeEEEEecCCCCCCchhheechHHHHH--HHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526 20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH--QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY 96 (461)
Q Consensus 20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~--~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~ 96 (461)
....++|+++|+|||||||.||+|+++|+ ++. ..... ..++++++|++++.+|++|.+++.. .+.++..|+++++
T Consensus 201 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 201 VETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp CCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred cCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 44678999999999999999999999999 444 33344 6778999999999999999999874 6667889998887
Q ss_pred c-----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCC
Q 012526 97 T-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 171 (461)
Q Consensus 97 ~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (461)
. ++..+++.++++++|+++++|+++..+.+.. .
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----~-------------------------------------- 316 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----L-------------------------------------- 316 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----T--------------------------------------
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----c--------------------------------------
Confidence 4 5788999999999999999999998886520 0
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccc
Q 012526 172 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV 250 (461)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~ 250 (461)
....+..+|.+++||+++++++ +.+.+.+++++++.||+||++..
T Consensus 317 ----------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~ 362 (570)
T 3c5e_A 317 ----------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLT 362 (570)
T ss_dssp ----------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEE
T ss_pred ----------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccc
Confidence 0013445699999999998886 55666689999999999999877
Q ss_pred eeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEe-----cCCccccccCCchhhccccCCCCcccCCce
Q 012526 251 IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR-----GSQVMQGYFKNPSATKQALDEDGWLNTGDI 325 (461)
Q Consensus 251 ~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~-----~~~~~~gy~~~~~~~~~~f~~~~~~~TGDl 325 (461)
++.........+++|+|+++++++|+| +++++++.|+.|||+|+ |++++.||+++|+.|...| .++||+|||+
T Consensus 363 ~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDl 440 (570)
T 3c5e_A 363 CMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDR 440 (570)
T ss_dssp EECCTTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEE
T ss_pred eecCcccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCcccccee
Confidence 665544445678999999999999999 45889999999999999 9999999999999999999 4899999999
Q ss_pred EeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHH
Q 012526 326 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 401 (461)
Q Consensus 326 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~ 401 (461)
|++++ ||.++|.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|++.++..
T Consensus 441 g~~d~----------dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 509 (570)
T 3c5e_A 441 GIKDE----------DGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL 509 (570)
T ss_dssp EEECT----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT
T ss_pred EEEcC----------CceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc
Confidence 99998 8999999999999997 8999999999999999999999999998653 4668888764310
Q ss_pred HHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 402 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
........++|+++++++|+.|+ .|+.|.++++.|.+.|||+.
T Consensus 510 -----------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 552 (570)
T 3c5e_A 510 -----------SHDPEQLTKELQQHVKSVTAPYK-----YPRKIEFVLNLPKTVTGKIQ 552 (570)
T ss_dssp -----------TSCHHHHHHHHHHHHHHHSCGGG-----SCSEEEEESCCCBCTTCCBC
T ss_pred -----------CcchHHHHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCCcCCc
Confidence 00112235788888888888887 66789999999999999984
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7.8e-51 Score=432.75 Aligned_cols=335 Identities=21% Similarity=0.328 Sum_probs=286.7
Q ss_pred CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh--hhhhhccCeEEE
Q 012526 18 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELM 95 (461)
Q Consensus 18 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~--~~~~l~~G~~~~ 95 (461)
......++|++|++|||||||.||||+++|+++.+.+......+++.++|++++++|++|.+++.. .+.++..|++++
T Consensus 177 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v 256 (617)
T 3rg2_A 177 TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256 (617)
T ss_dssp CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence 344567899999999999999999999999999999999888899999999999999999998865 667789999999
Q ss_pred Ec---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526 96 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 172 (461)
Q Consensus 96 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (461)
+. ++..+++.++++++|++.++|+++..+.+......
T Consensus 257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------- 296 (617)
T 3rg2_A 257 LAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE---------------------------------------- 296 (617)
T ss_dssp ECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC----------------------------------------
T ss_pred EeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc----------------------------------------
Confidence 85 57788999999999999999999988876532210
Q ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccce
Q 012526 173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI 251 (461)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~ 251 (461)
....+..+|.+++||+++++++ +.+.+.++++++|.||+||++..+
T Consensus 297 ---------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 343 (617)
T 3rg2_A 297 ---------------------------------SRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNY 343 (617)
T ss_dssp ---------------------------------CTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEE
T ss_pred ---------------------------------ccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeec
Confidence 0123455699999999999887 555566799999999999987654
Q ss_pred eccCCCC-CCccccccCC-CCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeec
Q 012526 252 AARRPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 329 (461)
Q Consensus 252 ~~~~~~~-~~~~~~G~~~-~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~ 329 (461)
+...... ....++|.|+ ++.+++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|..++||+|||+|+++
T Consensus 344 ~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~ 422 (617)
T 3rg2_A 344 TRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID 422 (617)
T ss_dssp CCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred ccCCCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEc
Confidence 4322211 2235789997 788999999 668999999999999999999999999999999999989999999999999
Q ss_pred cCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHH
Q 012526 330 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAA 405 (461)
Q Consensus 330 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~ 405 (461)
+ ||.++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ +.+.++++..
T Consensus 423 ~----------dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~-------- 483 (617)
T 3rg2_A 423 P----------EGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK-------- 483 (617)
T ss_dssp T----------TSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--------
T ss_pred C----------CceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeC--------
Confidence 8 8999999999999997 899999999999999999999999998754 3566788775
Q ss_pred HHcCCCcCCccccCcHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 406 KRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 406 ~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.+++++++++ .|+.|+ .+..|.++++.|.+.|||+.
T Consensus 484 ----------~~~~~~~l~~~l~~~~lp~~~-----vP~~~~~v~~lP~t~~GKid 524 (617)
T 3rg2_A 484 ----------EPLRAVQVRRFLREQGIAEFK-----LPDRVECVDSLPLTAVGKVD 524 (617)
T ss_dssp ----------SCCCHHHHHHHHHTTTCCGGG-----SCSEEEECSCCCBCTTSSBC
T ss_pred ----------CCCCHHHHHHHHHhCCCcccc-----CCcEEEEecccCCCCCCCCc
Confidence 23567889999998 699998 56789999999999999984
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.1e-51 Score=435.47 Aligned_cols=330 Identities=22% Similarity=0.262 Sum_probs=203.6
Q ss_pred CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526 20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 97 (461)
Q Consensus 20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-- 97 (461)
....++|+++|+|||||||.||||+++|+++.+.+.. ...++++++|++++++|++|..+....+.++..|+++++.
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 4467899999999999999999999999999776554 4556789999999999999877777777789999988884
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCch
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 174 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (461)
++..+++.++++++|++.++|+++..+.+..
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---------------------------------------------- 321 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV---------------------------------------------- 321 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----------------------------------------------
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc----------------------------------------------
Confidence 4778999999999999999999998886521
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCcccee
Q 012526 175 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA 252 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~~ 252 (461)
...+.++|.+++||++++... +++.+.+ ++++++.||+||++.+++
T Consensus 322 --------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 369 (570)
T 4gr5_A 322 --------------------------------PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT 369 (570)
T ss_dssp --------------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred --------------------------------hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence 123445699999999998654 6676766 899999999999987765
Q ss_pred ccCCC----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCC--------Ccc
Q 012526 253 ARRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED--------GWL 320 (461)
Q Consensus 253 ~~~~~----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~--------~~~ 320 (461)
..... .....++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|..+ +||
T Consensus 370 ~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~ 448 (570)
T 4gr5_A 370 HHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMY 448 (570)
T ss_dssp EEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEE
T ss_pred eeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEE
Confidence 44321 23345689999999999999 568899999999999999999999999999999988543 799
Q ss_pred cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEc
Q 012526 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP 396 (461)
Q Consensus 321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~ 396 (461)
+|||+|++++ ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.|+|++
T Consensus 449 ~TGDlg~~d~----------dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~ 517 (570)
T 4gr5_A 449 RTGDLARRRA----------DGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVA 517 (570)
T ss_dssp EEEEEEEECT----------TSCEEEEEC---------------------------------------------------
T ss_pred eCCCeEEECC----------CCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEe
Confidence 9999999998 8999999999999997 9999999999999999999999999998654 56677776
Q ss_pred ChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 397 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
..+ ....+.++|+++++++|+.|+ .+++|.++++.|.+.|||+.
T Consensus 518 ~~~---------------~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~ 561 (570)
T 4gr5_A 518 ERA---------------DAPPDAAELRRHVAEALPAYM-----VPVECVPVDELPRTPNGKLD 561 (570)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCC---------------CCCcCHHHHHHHHHhhCcccc-----CCcEEEEcccCCCCCCcCcc
Confidence 532 134567899999999999998 56789999999999999974
No 20
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=9.9e-52 Score=429.99 Aligned_cols=331 Identities=23% Similarity=0.327 Sum_probs=205.5
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhh-ccCeEE
Q 012526 16 HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIF-SRGIEL 94 (461)
Q Consensus 16 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l-~~G~~~ 94 (461)
..+.....++|+++|+|||||||.||+|+++|+++.+.+......++++++|++++.+|++|.+++...+.++ ..|+.+
T Consensus 151 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~ 230 (509)
T 3ivr_A 151 PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASV 230 (509)
T ss_dssp CCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE
T ss_pred CCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEE
Confidence 3444566889999999999999999999999999999999988899999999999999999999998777654 445555
Q ss_pred EE--cchhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526 95 MY--TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 172 (461)
Q Consensus 95 ~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (461)
+. +++..+++.++++++|++.++|+++..+++...
T Consensus 231 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------------------------------------------- 267 (509)
T 3ivr_A 231 IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA------------------------------------------- 267 (509)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-------------------------------------------
T ss_pred EecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-------------------------------------------
Confidence 44 378899999999999999999999988876320
Q ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHh-CCeeeeecccCCCccce
Q 012526 173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVI 251 (461)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~-~~~v~~~YG~tE~~~~~ 251 (461)
...+..++.++.+|++ ...+.+.+.+ ++++++.||+||++.++
T Consensus 268 ----------------------------------~~~l~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 311 (509)
T 3ivr_A 268 ----------------------------------PAQLASLRAVTGLDTP--ETIERFEATCPNATFWATFGQSETSGLS 311 (509)
T ss_dssp ----------------------------------GGGGTTCCEEEEECCH--HHHHHHHHHCTTCEEEEEEEEGGGTEEE
T ss_pred ----------------------------------ccchhhhheecccCCh--HHHHHHHHhcCCCeEEcccCcccccccc
Confidence 0234455888889887 5557777777 89999999999999876
Q ss_pred eccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526 252 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331 (461)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~ 331 (461)
+...... ...++|+|+++++++|+|+ +++++++|+.|||+|+|++++.||+++|+.+.+.|. +|||+|||+|++++
T Consensus 312 ~~~~~~~-~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~- 387 (509)
T 3ivr_A 312 TFAPYRD-RPKSAGRPLFWRTVAVVDA-EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDA- 387 (509)
T ss_dssp EEEEGGG-STTSCCEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECT-
T ss_pred ccCcccc-CCCcccccCCCcEEEEECC-CCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECC-
Confidence 6544322 2345899999999999995 589999999999999999999999999999999994 89999999999998
Q ss_pred CCCCcccccCCeEEEeccc--cceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHH
Q 012526 332 HSRGRSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAA 405 (461)
Q Consensus 332 ~~~~~~~~~~G~l~i~GR~--~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~ 405 (461)
||.+++.||. ||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++. +.+++++.++
T Consensus 388 ---------dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~------ 451 (509)
T 3ivr_A 388 ---------DGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG------ 451 (509)
T ss_dssp ---------TSCEEEEEEC-------------------------------------------------------------
T ss_pred ---------CceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC------
Confidence 8999999999 999996 99999999999999999999999999987654 5567766543
Q ss_pred HHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 406 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 406 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++|+.|+ .|++|.++++.|.+.|||+.
T Consensus 452 ----------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKid 491 (509)
T 3ivr_A 452 ----------ESIAADALAEFVASLIARYK-----KPKHVVFVEALPKDAKGAID 491 (509)
T ss_dssp -------------------------------------------------------
T ss_pred ----------CCCCHHHHHHHHHhhCcccC-----CCcEEEEecCCCCCCCCCcc
Confidence 34567899999999999998 56789999999999999974
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.1e-51 Score=423.18 Aligned_cols=321 Identities=24% Similarity=0.316 Sum_probs=272.2
Q ss_pred CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526 20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 97 (461)
Q Consensus 20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-- 97 (461)
....++|+++++|||||||.||+|++||+++.+.+......++++++|++++.+|++|.+++...+.++..|+++++.
T Consensus 158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 345789999999999999999999999999999998888889999999999999999999998888889999999985
Q ss_pred -chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHH
Q 012526 98 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 176 (461)
Q Consensus 98 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (461)
++..+++.++++++|++.++|+++..+.+....
T Consensus 238 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------- 271 (501)
T 3ipl_A 238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------------------------- 271 (501)
T ss_dssp CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------------------
T ss_pred CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------------------
Confidence 688999999999999999999999888653110
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCC
Q 012526 177 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP 256 (461)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~ 256 (461)
...++|.+++||+++++++.+....+++++++.||+||++..+.....
T Consensus 272 --------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 319 (501)
T 3ipl_A 272 --------------------------------EPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATP 319 (501)
T ss_dssp --------------------------------SCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECH
T ss_pred --------------------------------CcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCc
Confidence 001348999999999998866666689999999999999876554332
Q ss_pred C--CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCC
Q 012526 257 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 334 (461)
Q Consensus 257 ~--~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~ 334 (461)
. ....+++|+|+++++++++|++ +|+.|||+|+|++++.||+++|+.+.. | .+|||+|||+|++++
T Consensus 320 ~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~---- 387 (501)
T 3ipl_A 320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDH---- 387 (501)
T ss_dssp HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECT----
T ss_pred cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcC----
Confidence 2 2345789999999999999964 466899999999999999999999887 6 689999999999998
Q ss_pred CcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCe----eEEEEEcChHHHHHHHHHcCC
Q 012526 335 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSI 410 (461)
Q Consensus 335 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~----~~a~vv~~~~~~~~~~~~~~~ 410 (461)
+|.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++. +.++++..
T Consensus 388 ------~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~------------- 447 (501)
T 3ipl_A 388 ------EGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE------------- 447 (501)
T ss_dssp ------TSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-------------
T ss_pred ------CCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC-------------
Confidence 8999999999999996 99999999999999999999999999986553 45666653
Q ss_pred CcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 411 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 411 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++|+.|+ .+++|.++++.|.+.|||+.
T Consensus 448 -----~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 487 (501)
T 3ipl_A 448 -----SDISKAQLIAYLSKHLAKYK-----VPKHFEKVDTLPYTSTGKLQ 487 (501)
T ss_dssp -----SCCCHHHHHHHHHHHSCGGG-----SCSEEEECSSCC--------
T ss_pred -----CCCCHHHHHHHHHhhCcccc-----CCCEEEEecccCCCCCCCEe
Confidence 34578999999999999998 66789999999999999974
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6.5e-51 Score=432.71 Aligned_cols=323 Identities=18% Similarity=0.186 Sum_probs=269.6
Q ss_pred CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc---
Q 012526 21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 97 (461)
Q Consensus 21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~--- 97 (461)
...++|++||+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+|++|..++...+.++..|+++++.
T Consensus 160 ~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 160 CFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 346899999999999999999999999999877655 5567889999999999999999998888899999999884
Q ss_pred --chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchH
Q 012526 98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 175 (461)
Q Consensus 98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (461)
++..+++.++++++|++.++|+++..+.+..
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~----------------------------------------------- 271 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLD----------------------------------------------- 271 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-----------------------------------------------
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-----------------------------------------------
Confidence 5788999999999999999999998876420
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchh-HHHHHHHh-CCeeeeecccCCCccceec
Q 012526 176 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAI-GVKVQVGYGLTESSPVIAA 253 (461)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~-~~~~~~~~-~~~v~~~YG~tE~~~~~~~ 253 (461)
...+.++|.+++||++++.. ++++.+.+ +++++|.||+||++.+++.
T Consensus 272 -------------------------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 320 (620)
T 4dg8_A 272 -------------------------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC 320 (620)
T ss_dssp -------------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred -------------------------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence 02344569999999999865 56676665 8999999999999887654
Q ss_pred cCCC----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCC-------CcccC
Q 012526 254 RRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-------GWLNT 322 (461)
Q Consensus 254 ~~~~----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~-------~~~~T 322 (461)
.... .....++|+|+++++++|+|+++...++.|+.|||+|+|++++.||+++|+.|++.|..+ +||+|
T Consensus 321 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrT 400 (620)
T 4dg8_A 321 HVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRT 400 (620)
T ss_dssp EECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEE
T ss_pred EeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeC
Confidence 3322 134568999999999999997766668999999999999999999999999999999653 79999
Q ss_pred CceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCCeeE---EEEEcChH
Q 012526 323 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG---AIIVPDKE 399 (461)
Q Consensus 323 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~~~~---a~vv~~~~ 399 (461)
||+|++++ ||.++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++... ++++..
T Consensus 401 GDl~~~~~----------dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~-- 467 (620)
T 4dg8_A 401 GDRARYDE----------QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGK-- 467 (620)
T ss_dssp EEEEEECT----------TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEEC--
T ss_pred CCEEEECC----------CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecC--
Confidence 99999998 8999999999999998 8999999999999999999999999988665433 333322
Q ss_pred HHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 400 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
.++++++++++|+.|+ .++.|.++++.|.+.|||+.
T Consensus 468 --------------------~~~~~~~l~~~Lp~y~-----~P~~~~~v~~lP~t~~GKid 503 (620)
T 4dg8_A 468 --------------------ADASPQALLRQLPTWQ-----RPHACVRVEALPLTAHGKLD 503 (620)
T ss_dssp --------------------TTCCCHHHHHHSCGGG-----SCSEEEECSSCCCC----CC
T ss_pred --------------------hHHHHHHHHHhChhhc-----CCcEEEEECcCCCCcccCHh
Confidence 1223456778899998 56789999999999999984
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.2e-51 Score=427.24 Aligned_cols=336 Identities=24% Similarity=0.368 Sum_probs=271.7
Q ss_pred CCCCCCCCeEEEEecCCCCCCchhheechHHH-HHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526 19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY 96 (461)
Q Consensus 19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~ 96 (461)
.....++|+++++|||||||.||+|+++|+++ ..........+++.++|++++.+|++|.+++.. .+.++..|+++++
T Consensus 177 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 256 (529)
T 2v7b_A 177 AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAIL 256 (529)
T ss_dssp CCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEEC
T ss_pred ccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEE
Confidence 34567899999999999999999999999999 666655566678899999999999999999875 4567899999887
Q ss_pred c----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCC
Q 012526 97 T----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 172 (461)
Q Consensus 97 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (461)
. ++..+++.++++++|++.++|+++..++......
T Consensus 257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------- 295 (529)
T 2v7b_A 257 MAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLP----------------------------------------- 295 (529)
T ss_dssp CCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCC-----------------------------------------
T ss_pred ecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccc-----------------------------------------
Confidence 4 5788999999999999999999998776421000
Q ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhCCeeeeecccCCCccce
Q 012526 173 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI 251 (461)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~~~v~~~YG~tE~~~~~ 251 (461)
. .....+|.+++||+++++++ +.+.+.+++++++.||+||++.++
T Consensus 296 --------------------------------~--~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~ 341 (529)
T 2v7b_A 296 --------------------------------A--RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIF 341 (529)
T ss_dssp --------------------------------C--GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEE
T ss_pred --------------------------------c--ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCcee
Confidence 0 00114589999999999887 555566799999999999997766
Q ss_pred eccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccC
Q 012526 252 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 331 (461)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~ 331 (461)
..........+++|+|.++++++|+| ++++++++|+.|||+|+|++++.||+++|+.+...|. ++||+|||+|++++
T Consensus 342 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~- 418 (529)
T 2v7b_A 342 LSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLP- 418 (529)
T ss_dssp EECCTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECT-
T ss_pred eccccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECC-
Confidence 65555555678899999999999999 5688999999999999999999999999999999994 89999999999998
Q ss_pred CCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC---CCeeEEEEEcChHHHHHHHHHc
Q 012526 332 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRL 408 (461)
Q Consensus 332 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~---~~~~~a~vv~~~~~~~~~~~~~ 408 (461)
+|.+++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.. .+.+.|++++.++.
T Consensus 419 ---------~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~-------- 480 (529)
T 2v7b_A 419 ---------NGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF-------- 480 (529)
T ss_dssp ---------TSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC--------
T ss_pred ---------CccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC--------
Confidence 8999999999999997 89999999999999999999999999972 23567888876420
Q ss_pred CCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 409 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 409 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
.......++++++++++|+.|+ .+++|.++++.|.+.|||+.
T Consensus 481 -----~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 522 (529)
T 2v7b_A 481 -----APSEILAEELKAFVKDRLAPHK-----YPRDIVFVDDLPKTATGKIQ 522 (529)
T ss_dssp -----CCCHHHHHHHHHHHHTTSCTTT-----SCSEEEEESCCCBCTTSCBC
T ss_pred -----CcchhHHHHHHHHHHhhcchhh-----CCeEEEEeccCCCCCccchh
Confidence 0011123578888888888776 67789999999999999974
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=6.9e-51 Score=435.94 Aligned_cols=349 Identities=19% Similarity=0.213 Sum_probs=282.5
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHH-HHhhhcCCCCCcEEEEECChhhhHHH-hhhhhhhccCeEE
Q 012526 17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYER-ACGYFIFSRGIEL 94 (461)
Q Consensus 17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~~~-~~~~~~l~~G~~~ 94 (461)
.+.....++|+++|+|||||||.||||+++|++++..+. .+...+++.++|++++.+|++|+.+. ...+.++..|+++
T Consensus 254 ~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~ 333 (663)
T 1ry2_A 254 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT 333 (663)
T ss_dssp CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEE
T ss_pred CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEE
Confidence 334456789999999999999999999999999876654 45567889999999999999999998 4567789999998
Q ss_pred EEc-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccccc
Q 012526 95 MYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR 167 (461)
Q Consensus 95 ~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
++. ++..+++.|+++++|+++++|+++..+.+......
T Consensus 334 v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~----------------------------------- 378 (663)
T 1ry2_A 334 LVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI----------------------------------- 378 (663)
T ss_dssp EEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS-----------------------------------
T ss_pred EEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcccc-----------------------------------
Confidence 874 46789999999999999999999987754211000
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHH-HHHhC---Ceeeeecc
Q 012526 168 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIG---VKVQVGYG 243 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~-~~~~~---~~v~~~YG 243 (461)
....+.++|.+++||+++++++.++ .+.+| +++++.||
T Consensus 379 --------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG 420 (663)
T 1ry2_A 379 --------------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYW 420 (663)
T ss_dssp --------------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBC
T ss_pred --------------------------------------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeEC
Confidence 0023456799999999999987554 45577 89999999
Q ss_pred cCCCccceeccCC---CCCCccccccCCCCeEEEEEeCCCCCcCCC-CCceEEEEec--CCccccccCCchhhccccCC-
Q 012526 244 LTESSPVIAARRP---TCNVLGSVGHPINHTEIKIVDAETNEVLPA-GSKGIVKVRG--SQVMQGYFKNPSATKQALDE- 316 (461)
Q Consensus 244 ~tE~~~~~~~~~~---~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~-g~~Gel~v~~--~~~~~gy~~~~~~~~~~f~~- 316 (461)
+||++..++...+ ....++++|+|+++++++|+|++++++++. |+.|||+|++ |+++.|||++|+.+.+.|..
T Consensus 421 ~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~ 500 (663)
T 1ry2_A 421 QTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP 500 (663)
T ss_dssp CTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS
T ss_pred CccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC
Confidence 9999876655443 234678999999999999999757888888 9999999999 58999999999998887643
Q ss_pred -CCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeE
Q 012526 317 -DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPG 391 (461)
Q Consensus 317 -~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~ 391 (461)
+|||+|||+|++++ ||.++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.++ +.+.
T Consensus 501 ~~g~y~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~ 569 (663)
T 1ry2_A 501 YPGYYFTGDGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVA 569 (663)
T ss_dssp STTSEEEEEEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCE
T ss_pred CCCEEEcCCEEEEcC----------CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEE
Confidence 78999999999998 8999999999999997 899999999999999999999999999865 3678
Q ss_pred EEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 392 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 392 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
|+|+++++...... ..+......++|+++++++|+.|+ .|+.|.++++.|.+.|||+.
T Consensus 570 a~Vv~~~~~~~~~~------~~~~~~~l~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~T~sGKi~ 627 (663)
T 1ry2_A 570 AFVVLKNKSSWSTA------TDDELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKIM 627 (663)
T ss_dssp EEEEEC------------------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCBC
T ss_pred EEEEEcCCCccccc------cchhHHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCccCch
Confidence 99998754210000 000000125788888998888887 66789999999999999974
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=7.9e-51 Score=454.08 Aligned_cols=337 Identities=29% Similarity=0.455 Sum_probs=215.1
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh----hcCCCCCcEEEEECChhhhHHHhh-hhhhhccC
Q 012526 17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRG 91 (461)
Q Consensus 17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G 91 (461)
.+.....++|+++|+|||||||.||+|+++|+++++.+..... .+++.++|++++.+|++|.+++.. .+.++..|
T Consensus 217 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G 296 (979)
T 3tsy_A 217 IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVG 296 (979)
T ss_dssp SCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred CCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence 3444568899999999999999999999999999888766543 456889999999999999999865 45678999
Q ss_pred eEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526 92 IELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 168 (461)
Q Consensus 92 ~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (461)
+++++. ++..+++.++++++|++.++|+++..+.+.....
T Consensus 297 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------- 339 (979)
T 3tsy_A 297 AAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE------------------------------------- 339 (979)
T ss_dssp CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG-------------------------------------
T ss_pred cEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc-------------------------------------
Confidence 999985 5788999999999999999999998886532111
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHH-HHHHHh-CCeeeeecccCC
Q 012526 169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTE 246 (461)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~-~~~~~~-~~~v~~~YG~tE 246 (461)
...+.++|.+++||+++++++. .+.+.+ ++++++.||+||
T Consensus 340 --------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE 381 (979)
T 3tsy_A 340 --------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381 (979)
T ss_dssp --------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGG
T ss_pred --------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhh
Confidence 1234556999999999998874 455666 899999999999
Q ss_pred CccceeccC-----CCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCccc
Q 012526 247 SSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 321 (461)
Q Consensus 247 ~~~~~~~~~-----~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~ 321 (461)
++.+++... +.....+++|+|+++++++|+|+++++++++|+.|||+|+|++++.||+++|+.|.+.|+.++||+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~ 461 (979)
T 3tsy_A 382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461 (979)
T ss_dssp GCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred hhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEE
Confidence 987765431 223456789999999999999998899999999999999999999999999999999998899999
Q ss_pred CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcC
Q 012526 322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD 397 (461)
Q Consensus 322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~ 397 (461)
|||+|++++ ||.++|+||.||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ .+.++|++.
T Consensus 462 TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~ 530 (979)
T 3tsy_A 462 TGDIGLIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKS 530 (979)
T ss_dssp EEEEEEECT----------TSCEEEEEESCC-------------------------------------------------
T ss_pred cCCEEEEcC----------CceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEEC
Confidence 999999998 8999999999999997 8999999999999999999999999997654 456777765
Q ss_pred hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
++ ...+.++++++++++|+.|+ .|++|.++++.|.+.|||+.
T Consensus 531 ~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi~ 572 (979)
T 3tsy_A 531 KD----------------SELSEDDVKQFVSKQVVFYK-----RINKVFFTESIPKAPSGKIL 572 (979)
T ss_dssp ---------------------------------------------------------------
T ss_pred CC----------------CCCCHHHHHHHHHHhccccc-----CCeEEEEeCCcCcCCCCCee
Confidence 43 34567899999999999998 56689999999999999974
No 26
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.5e-50 Score=422.22 Aligned_cols=341 Identities=20% Similarity=0.218 Sum_probs=273.3
Q ss_pred CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh--cCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEE
Q 012526 19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY 96 (461)
Q Consensus 19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~ 96 (461)
.....++|+++++|||||||.||+|++||+++.+.+...... +++.+++++++..|++|..++...+.++..|+++++
T Consensus 139 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~ 218 (521)
T 3l8c_A 139 THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFA 218 (521)
T ss_dssp SSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEE
T ss_pred CCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEE
Confidence 445678999999999999999999999999999887776655 678899999999999999998777778999999988
Q ss_pred c------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCC
Q 012526 97 T------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK 170 (461)
Q Consensus 97 ~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (461)
. ++..+++.+.+++++++.++|+++..+......
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------- 258 (521)
T 3l8c_A 219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF---------------------------------------- 258 (521)
T ss_dssp CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC----------------------------------------
T ss_pred cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc----------------------------------------
Confidence 5 467899999999999999999998776542100
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCc
Q 012526 171 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESS 248 (461)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~ 248 (461)
....+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++
T Consensus 259 -----------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 303 (521)
T 3l8c_A 259 -----------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEAT 303 (521)
T ss_dssp -----------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGS
T ss_pred -----------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHh
Confidence 0123455699999999998876 6666777 89999999999998
Q ss_pred cceeccCCC-----CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhcccc---CCCCcc
Q 012526 249 PVIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWL 320 (461)
Q Consensus 249 ~~~~~~~~~-----~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f---~~~~~~ 320 (461)
..++..... .....++|+|.++++++|+| +++.++++|+.|||+|+||+++.||+++|+.+.+.| +.++||
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 382 (521)
T 3l8c_A 304 VALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382 (521)
T ss_dssp SCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence 776543321 12446799999999999999 568899999999999999999999999999999988 457899
Q ss_pred cCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC-----CeeEEEEE
Q 012526 321 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-----RRPGAIIV 395 (461)
Q Consensus 321 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~-----~~~~a~vv 395 (461)
+|||+|++++ +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++..+ +.+.|+|+
T Consensus 383 ~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv 451 (521)
T 3l8c_A 383 HTGDIGSLTE----------DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIV 451 (521)
T ss_dssp EEEEEEEECS----------SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEE
T ss_pred eCCCEEEEeC----------CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEE
Confidence 9999999998 8999999999999997 899999999999999999999999998743 35678888
Q ss_pred cChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 396 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
+.++... ..+......++++++++++|+.|+ .+++|.++++.|.+.|||+.
T Consensus 452 ~~~~~~~---------~~~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKid 502 (521)
T 3l8c_A 452 VKDGVKE---------RFDRELELTKAIKASVKDHMMSYM-----MPSKFLYRDSLPLTPNGKID 502 (521)
T ss_dssp ECTTSGG---------GCSSHHHHHHHHHHHSGGGSCGGG-----SCSEEEECSSCCBCTTSSBC
T ss_pred ecCcccc---------ccccchhhHHHHHHHHHhhCcccc-----CCeEEEEecccCCCCCcCcc
Confidence 8653100 000000124678888888888887 66789999999999999984
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5.4e-48 Score=441.96 Aligned_cols=327 Identities=22% Similarity=0.270 Sum_probs=281.2
Q ss_pred CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526 20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 97 (461)
Q Consensus 20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-- 97 (461)
....+++++||+|||||||.||||+++|+++.+. ......++++++|+++++.|++|..+....+.++..|+++++.
T Consensus 602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 3457899999999999999999999999999866 4555678889999999999999999988888899999999985
Q ss_pred ----chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCc
Q 012526 98 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 173 (461)
Q Consensus 98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (461)
++..+.+.++++++|++.++|+++..+.+...
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-------------------------------------------- 716 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE-------------------------------------------- 716 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS--------------------------------------------
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch--------------------------------------------
Confidence 46789999999999999999999988764210
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh-CCeeeeecccCCCccce
Q 012526 174 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI 251 (461)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~-~~~v~~~YG~tE~~~~~ 251 (461)
..+..+|.+++||++++... +++.+.+ +.+++|.||+||++..+
T Consensus 717 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 762 (1304)
T 2vsq_A 717 ----------------------------------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762 (1304)
T ss_dssp ----------------------------------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred ----------------------------------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence 01123489999999998765 6677776 47899999999998876
Q ss_pred eccCC----CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCC------CCccc
Q 012526 252 AARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLN 321 (461)
Q Consensus 252 ~~~~~----~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~------~~~~~ 321 (461)
+.... ......++|+|++|++++|+| +.++++|.|+.|||+|+|+++++||+++|+.|++.|.. ++||+
T Consensus 763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yr 841 (1304)
T 2vsq_A 763 TAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYR 841 (1304)
T ss_dssp EEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEE
T ss_pred eeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEe
Confidence 65432 223446799999999999999 55889999999999999999999999999999999843 45999
Q ss_pred CCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcC
Q 012526 322 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD 397 (461)
Q Consensus 322 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~ 397 (461)
|||+|++++ ||.++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ..+.|+++..
T Consensus 842 TGDl~~~~~----------dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~ 910 (1304)
T 2vsq_A 842 TGDLARWLP----------DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR 910 (1304)
T ss_dssp EEEEEEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS
T ss_pred cCCeEEEcC----------CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC
Confidence 999999999 8999999999999998 899999999999999999999999998753 4678888875
Q ss_pred hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
...+.++++++++++|+.|+ .|..|.++++.|.+.|||+.
T Consensus 911 ------------------~~~~~~~l~~~l~~~Lp~ym-----vP~~~~~l~~lP~t~~GKid 950 (1304)
T 2vsq_A 911 ------------------TQLSAEDVKAHLKKQLPAYM-----VPQTFTFLDELPLTTNGKVN 950 (1304)
T ss_dssp ------------------SSSCHHHHHHHHHHHSCGGG-----SCSEEEEESCCCCCSSCSSC
T ss_pred ------------------CCCCHHHHHHHHHHhChHhh-----hccEEEEecccCCCCCcccC
Confidence 23567899999999999998 55689999999999999985
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.6e-48 Score=411.33 Aligned_cols=340 Identities=21% Similarity=0.317 Sum_probs=276.8
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEE
Q 012526 17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM 95 (461)
Q Consensus 17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~ 95 (461)
.......++|+++|+|||||||.||||++||+++++.+......++++++|++++++|++|.+++.. .+.++..|++++
T Consensus 159 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v 238 (590)
T 3kxw_A 159 WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAI 238 (590)
T ss_dssp CCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEE
T ss_pred CCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEE
Confidence 3445668899999999999999999999999999999999888999999999999999999999986 666789999998
Q ss_pred Ec-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccC
Q 012526 96 YT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 168 (461)
Q Consensus 96 ~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (461)
+. ++..+++.++++++|++.++|.++..+.+.......
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~----------------------------------- 283 (590)
T 3kxw_A 239 MMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK----------------------------------- 283 (590)
T ss_dssp ECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG-----------------------------------
T ss_pred EeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc-----------------------------------
Confidence 84 467899999999999999999999888764221100
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh------CCeeeee
Q 012526 169 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVG 241 (461)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~------~~~v~~~ 241 (461)
....+.++|.+++||+++++++ +.+.+.+ +.++++.
T Consensus 284 -------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (590)
T 3kxw_A 284 -------------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPC 326 (590)
T ss_dssp -------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEE
T ss_pred -------------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccc
Confidence 0124456799999999999876 5555665 2479999
Q ss_pred cccCCCccceeccCCC---------------------------CCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEE
Q 012526 242 YGLTESSPVIAARRPT---------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 294 (461)
Q Consensus 242 YG~tE~~~~~~~~~~~---------------------------~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v 294 (461)
||+||++..++...+. ....+++|+|+++ ++|+|++++.++++|+.|||+|
T Consensus 327 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v 404 (590)
T 3kxw_A 327 YGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWV 404 (590)
T ss_dssp EECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEE
T ss_pred cccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEE
Confidence 9999999877654321 1234678999998 8889988899999999999999
Q ss_pred ecCCccccccCCchhhccccCC------CC--cccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchh
Q 012526 295 RGSQVMQGYFKNPSATKQALDE------DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE 366 (461)
Q Consensus 295 ~~~~~~~gy~~~~~~~~~~f~~------~~--~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~e 366 (461)
+||+++.||+++|+.|++.|.. +| ||+|||+|+++ +|.++|.||.||+|++ +|++|+|.|
T Consensus 405 ~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----------dG~l~~~GR~dd~Ik~-~G~~v~p~e 472 (590)
T 3kxw_A 405 QSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIII-YGKNHYPQD 472 (590)
T ss_dssp ESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----------TTEEEEEEESSCHHHH-HHHTTHHHH
T ss_pred eCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----------CCEEEEEcCccceEEE-CCEecCHHH
Confidence 9999999999999999999853 24 99999999888 4999999999999998 899999999
Q ss_pred HHHHH-hcCcccc--EEEEEeCCC---CeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHH-HhccCC
Q 012526 367 LEEAA-LRSSLIR--QIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCS 439 (461)
Q Consensus 367 IE~~l-~~~p~V~--~a~V~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~ 439 (461)
||++| ..||+|. +|+|++.++ +.+.+++++.+. .....+.+++.++++++|.+ ++.+.
T Consensus 473 IE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~l~~~l~~~l~~~~~~p~- 537 (590)
T 3kxw_A 473 IEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNR--------------FMDDVAQDNLFNEIFELVYENHQLEV- 537 (590)
T ss_dssp HHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCT--------------TCCHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccc--------------cccchhHHHHHHHHHHHHHHHcCCce-
Confidence 99999 7899998 789888643 355677766532 00234668899999999996 55332
Q ss_pred CccccEEEe--cCCCCCCCCccc
Q 012526 440 FQIGPIHVV--DEPFTVNFLCLA 460 (461)
Q Consensus 440 ~~~~~~~~~--~~~~~~~~g~~~ 460 (461)
..+.++ ++.|.+.|||+.
T Consensus 538 ---~~i~~v~~~~lP~t~sGKi~ 557 (590)
T 3kxw_A 538 ---HTIVLIPLKAMPHTTSGKIR 557 (590)
T ss_dssp ---CEEEEEETTCSCCCSCHHHH
T ss_pred ---eEEEEECCCccCcCCCcHHH
Confidence 145666 689999999973
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.3e-48 Score=406.61 Aligned_cols=335 Identities=21% Similarity=0.306 Sum_probs=271.4
Q ss_pred CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh-cCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526 19 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-VPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY 96 (461)
Q Consensus 19 ~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~-~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~ 96 (461)
.....++|+++++|||||||.||+|+++|+++++++...... +++.++|++++++|++|.+++.. .+.++..|+++++
T Consensus 170 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~ 249 (576)
T 3gqw_A 170 LQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY 249 (576)
T ss_dssp CCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEE
T ss_pred cCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEE
Confidence 344568999999999999999999999999999888776554 78999999999999999999876 4455888888877
Q ss_pred c-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCC
Q 012526 97 T-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ 169 (461)
Q Consensus 97 ~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (461)
. ++..+++.++++++|++.++|+++..+.+......
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------- 292 (576)
T 3gqw_A 250 LRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD------------------------------------- 292 (576)
T ss_dssp CCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH-------------------------------------
T ss_pred cchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc-------------------------------------
Confidence 4 46789999999999999999999977755321110
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHh------CCeeeeec
Q 012526 170 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVGY 242 (461)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~------~~~v~~~Y 242 (461)
.....+.++|.+++||+++++++ +.+.+.+ +..+++.|
T Consensus 293 -----------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y 337 (576)
T 3gqw_A 293 -----------------------------------LAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCY 337 (576)
T ss_dssp -----------------------------------HTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEE
T ss_pred -----------------------------------cccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccC
Confidence 00123556799999999999876 5555666 67899999
Q ss_pred ccCCCccceeccCCCCC----------------------------CccccccCCCCeEEEEEeCCCCCcCCCCCceEEEE
Q 012526 243 GLTESSPVIAARRPTCN----------------------------VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 294 (461)
Q Consensus 243 G~tE~~~~~~~~~~~~~----------------------------~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v 294 (461)
|+||++..++....... ...++|+|+++++++|+| ++++++++|+.|||+|
T Consensus 338 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v 416 (576)
T 3gqw_A 338 GLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERVVGHICI 416 (576)
T ss_dssp ECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTBCEEEEE
T ss_pred CcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCCeEEEEE
Confidence 99999987765432210 112789999999999999 7789999999999999
Q ss_pred ecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcC
Q 012526 295 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS 374 (461)
Q Consensus 295 ~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~ 374 (461)
+|++++.||+++|+.+...+ .+|||+|||+|++ + ||.++++||.||+||+ +|++|+|.|||++|.+|
T Consensus 417 ~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~ 483 (576)
T 3gqw_A 417 SGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-L----------DGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQE 483 (576)
T ss_dssp ESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-E----------TTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTS
T ss_pred eCccccccccCCcccccccc-CCCeeeccceEEE-E----------CCEEEEEecCcceEEE-CCEEECHHHHHHHHHhC
Confidence 99999999999998887766 6899999999998 6 7999999999999998 89999999999999999
Q ss_pred ccccEEEEEeC--CCCeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHH-HHHhccCCCccccEEEec--
Q 012526 375 SLIRQIVVIGQ--DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGEL-RKWTSKCSFQIGPIHVVD-- 449 (461)
Q Consensus 375 p~V~~a~V~~~--~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~-- 449 (461)
|+|.+++|++. +++...++++.... .....+++++.++++| +.++ .+..+.+++
T Consensus 484 p~V~~~~vv~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~l~~~l~~~~~-----~p~~i~~v~~~ 542 (576)
T 3gqw_A 484 PEIHSGDAIAFVTAQEKIILQIQCRIS----------------DEERRGQLIHALAARIQSEFG-----VTAAIDLLPPH 542 (576)
T ss_dssp SSCCTTSEEEEECTTSCEEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHS-----CCEEEEEECSS
T ss_pred cccccccEEEEEcCCccEEEEEEEecC----------------chhHHHHHHHHHHHHHHHHhC-----CceeEEEECCC
Confidence 99998766655 44445555544321 2234578888999998 5676 445778887
Q ss_pred CCCCCCCCccc
Q 012526 450 EPFTVNFLCLA 460 (461)
Q Consensus 450 ~~~~~~~g~~~ 460 (461)
+.|.+.|||+.
T Consensus 543 ~lP~t~~GKi~ 553 (576)
T 3gqw_A 543 SIPRTSSGKPA 553 (576)
T ss_dssp CSCBCTTSSBC
T ss_pred CcCcCCCccch
Confidence 89999999974
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6e-48 Score=406.26 Aligned_cols=341 Identities=17% Similarity=0.152 Sum_probs=199.1
Q ss_pred CCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhh--------cCCCCCcEEEEECChhhhHHHhhhhhhhccC
Q 012526 20 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--------VPAENGDKFLSMLPPWHVYERACGYFIFSRG 91 (461)
Q Consensus 20 ~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~--------~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 91 (461)
...+++++++|+|||||||.||||+++|+++.+.+..+... +.+...+++++..|++|..++...+.++..|
T Consensus 170 ~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 249 (562)
T 3ite_A 170 NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFG 249 (562)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTT
T ss_pred cCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcc
Confidence 34567889999999999999999999999998877654432 4577889999999999998888778889999
Q ss_pred eEEEEcc----hhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhccccccc
Q 012526 92 IELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR 167 (461)
Q Consensus 92 ~~~~~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
+++++.+ +..+++.++++++|++.++|+++..+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~---------------------------------------- 289 (562)
T 3ite_A 250 LCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV---------------------------------------- 289 (562)
T ss_dssp CEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----------------------------------------
T ss_pred cEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----------------------------------------
Confidence 9998853 46788999999999999999987544210
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-HHhCCeeeeecccCC
Q 012526 168 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTE 246 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~~~~~~v~~~YG~tE 246 (461)
...+.++|.+++||+++++++.+.+ +.+++.+++.||+||
T Consensus 290 ---------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 330 (562)
T 3ite_A 290 ---------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE 330 (562)
T ss_dssp ---------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGG
T ss_pred ---------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccch
Confidence 0234556999999999999885555 445899999999999
Q ss_pred CccceeccCC-CCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCC--cccCC
Q 012526 247 SSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTG 323 (461)
Q Consensus 247 ~~~~~~~~~~-~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~--~~~TG 323 (461)
++..++.... .....+++|+|+++++++++|+++++++++|+.|||+|+|++++.|||++|+.+...+ .+| ||+||
T Consensus 331 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TG 409 (562)
T 3ite_A 331 VTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTG 409 (562)
T ss_dssp GCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEE
T ss_pred heeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-CCCCEEEecC
Confidence 9876655432 3345678999999999999998889999999999999999999999999999988766 355 99999
Q ss_pred ceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhHHHHHhcC-ccccEEEEEeCCCCeeE----EEEEcC-
Q 012526 324 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQDQRRPG----AIIVPD- 397 (461)
Q Consensus 324 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~-p~V~~a~V~~~~~~~~~----a~vv~~- 397 (461)
|+|++++ ||+++|.||.||+|++ +|++|+|.|||++|.+| |.+.+++|++.+++..+ +.++..
T Consensus 410 Dlg~~d~----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~ 478 (562)
T 3ite_A 410 DIVRMDA----------DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASS 478 (562)
T ss_dssp EEEEECT----------TSCEEEEEEC-----------------------------------------------------
T ss_pred CEEEEcC----------CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecc
Confidence 9999998 8999999999999997 99999999999999998 78889998887765432 233322
Q ss_pred hHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCC-CCCccc
Q 012526 398 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV-NFLCLA 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 460 (461)
........ ...........++|+++|+++|+.|+ .|+.|.++++.|.. .|||+.
T Consensus 479 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~L~~y~-----~P~~i~~v~~lP~t~~~GKi~ 533 (562)
T 3ite_A 479 GAAVRGEL----RWINENYKEINNSLRQACEQTLPAYM-----VPDFIIPISFIPLRDTSAKTD 533 (562)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccccccc----cccccchhhHHHHHHHHHHhhCCccc-----CCcEEEEeccCCCCCCCCcch
Confidence 21111000 00011122345689999999999998 66789999999966 899974
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.6e-48 Score=383.63 Aligned_cols=300 Identities=14% Similarity=0.119 Sum_probs=251.8
Q ss_pred CCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEcc-hhhH
Q 012526 24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNL 102 (461)
Q Consensus 24 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~ 102 (461)
.+|++||+|||||||.||||++||+++.+++......++++++|++++++|++|++++...+.++..|+++++.+ ....
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~ 115 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP 115 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH
Confidence 478999999999999999999999999999999999999999999999999999999988888888898888753 3456
Q ss_pred HHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcccccccCCCCCchHHHHHHHH
Q 012526 103 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL 182 (461)
Q Consensus 103 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (461)
++.++++++|++.++|+++..+++....
T Consensus 116 ~~~i~~~~~t~~~~~P~~l~~ll~~~~~---------------------------------------------------- 143 (358)
T 4gs5_A 116 LAGLDHADFDFVAMVPMQLQSILENSAT---------------------------------------------------- 143 (358)
T ss_dssp TTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------------
T ss_pred HHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------------
Confidence 7789999999999999999888653111
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHHHHhCCeeeeecccCCCccceeccCCCCCCcc
Q 012526 183 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG 262 (461)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~ 262 (461)
...+.++|.+++||+++++++.+..+.+++++++.||+||++..++.........+
T Consensus 144 ------------------------~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g 199 (358)
T 4gs5_A 144 ------------------------SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEAS 199 (358)
T ss_dssp ------------------------GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCC
T ss_pred ------------------------cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccc
Confidence 02334458999999999999877777789999999999999988887776666778
Q ss_pred ccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCC
Q 012526 263 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 342 (461)
Q Consensus 263 ~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G 342 (461)
.+|.+.|++++.+.+ .|||+++++.. .++||+|||+|++++ +|
T Consensus 200 ~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~d~----------~g 242 (358)
T 4gs5_A 200 ELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEIHG----------NA 242 (358)
T ss_dssp SCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEECS----------SE
T ss_pred eeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccccc----------Cc
Confidence 899999999887643 58999987532 478999999999998 67
Q ss_pred eEEEeccccceEEcCCceeecchhHHHHH---hcCccccEEEEE-eCCCC----eeEEEEEcChHHHHHHHHHcCCCcCC
Q 012526 343 VLVLEGRAKDTIVLSTGENVEPLELEEAA---LRSSLIRQIVVI-GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD 414 (461)
Q Consensus 343 ~l~i~GR~~d~i~~~~G~~v~~~eIE~~l---~~~p~V~~a~V~-~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~ 414 (461)
++++||.||+|++ +|++|+|.|||++| .+||+|.+|+|+ +.+++ .+.++|+...
T Consensus 243 -~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~---------------- 304 (358)
T 4gs5_A 243 -FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM---------------- 304 (358)
T ss_dssp -EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC----------------
T ss_pred -eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC----------------
Confidence 6777999999997 89999999999877 468999998877 44444 4556666542
Q ss_pred ccccCcHHHHHHHHHHHHHHhccCCCccccEEEecCCCCCCCCccc
Q 012526 415 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 460 (461)
Q Consensus 415 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (461)
.....++|+++++++|+.|+ .|++|.++++.|.+.|||+.
T Consensus 305 -~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 344 (358)
T 4gs5_A 305 -PEALTERLTAEIRSRVSTYE-----NPKHIYFAKAFAKTQTDKID 344 (358)
T ss_dssp -CHHHHHHHHHHHHHHSCGGG-----SCSCEEEESSCCBCTTSCBC
T ss_pred -CCcCHHHHHHHHHhhCCCCC-----CceEEEEECCcCCCCCCChh
Confidence 23456789999999999998 66789999999999999984
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=7.9e-45 Score=370.71 Aligned_cols=346 Identities=16% Similarity=0.118 Sum_probs=260.0
Q ss_pred ccccccccccccCccc--CCCCCCC-CCeEEEEecCCCCCCchhheechHHHHHHHHHH---hhhcCCCCCcEEEEECCh
Q 012526 2 LFSLPILTPVIAGKHY--KYETIGS-DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPP 75 (461)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~---~~~~~~~~~d~~~~~~p~ 75 (461)
|..+|++++......+ .....++ +++++++|||||||.||+|+++|+++.+.+..+ ...+++.++|++++.+|+
T Consensus 60 l~~lP~~~~~~l~~~~p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (436)
T 3qov_A 60 IRKIPFTTKSDMRANYPFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGY 139 (436)
T ss_dssp GGGSCCBCHHHHHHTTTTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCC
T ss_pred HHHCCCCCHHHHHhcCCCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECccc
Confidence 3456777665433332 3334566 899999999999999999999999997766554 344588999999999998
Q ss_pred hhhHHHh-hhhhhhccCeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhH
Q 012526 76 WHVYERA-CGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF 151 (461)
Q Consensus 76 ~~~~~~~-~~~~~l~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (461)
.|..+.. ..+.++..|+++++. ++..+++.++++++|+++++|+++..|++.......+
T Consensus 140 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------- 202 (436)
T 3qov_A 140 GMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID----------------- 202 (436)
T ss_dssp TTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-----------------
T ss_pred ccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-----------------
Confidence 6655544 456678899998875 5788999999999999999999999998765442211
Q ss_pred HHHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHH
Q 012526 152 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 230 (461)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~ 230 (461)
..+..+|.+++||+++++++ +.+
T Consensus 203 --------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~ 226 (436)
T 3qov_A 203 --------------------------------------------------------PRETTLKTLVIGAEPHTDEQRRKI 226 (436)
T ss_dssp --------------------------------------------------------TTSSSCCEEEEESSCCCHHHHHHH
T ss_pred --------------------------------------------------------cccCCccEEEEeCCcCCHHHHHHH
Confidence 12345699999999999987 445
Q ss_pred HHHhCCeeeeecccCCCccc-eeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchh
Q 012526 231 YEAIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 309 (461)
Q Consensus 231 ~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~ 309 (461)
.+.+|+++++.||+||+++. ...... .....|.+.+++.++|+|+++++++++|+.|||+|+|+
T Consensus 227 ~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------ 291 (436)
T 3qov_A 227 ERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------ 291 (436)
T ss_dssp HHHHTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------
T ss_pred HHHhCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------
Confidence 55679999999999999544 333221 11236777889999999988999999999999999983
Q ss_pred hccccCCCCcccCCceEeeccCCC-CCcccccCCe---EEEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeC
Q 012526 310 TKQALDEDGWLNTGDIGWIAPHHS-RGRSRRCGGV---LVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 385 (461)
Q Consensus 310 ~~~~f~~~~~~~TGDlg~~~~~~~-~~~~~~~~G~---l~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~ 385 (461)
+...| .++||+|||+|+++++.| ||+ .+ ++|.||.||+|++ +|++|+|.+||++|.+||+|.+++|++.
T Consensus 292 ~~~~~-~~~~y~TGDl~~~~~~gc~cG~-----~~~~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~ 364 (436)
T 3qov_A 292 DREMM-PLIRYRTRDLTRILPGKCPCGR-----THLRIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITL 364 (436)
T ss_dssp SCCSS-CCCSEEEEEEECEECSCCTTCC-----CSCEECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEE
T ss_pred CcCCc-eEEEEEcCCEEEEcCCCCCCCC-----CccccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEE
Confidence 23334 578999999999997422 221 13 5999999999998 8999999999999999999999999987
Q ss_pred CC----CeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCCCCCcc
Q 012526 386 DQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 459 (461)
Q Consensus 386 ~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~ 459 (461)
++ +.+.++|+++ +. ......+.++++++++++|+++.. .+..+.+++ +.|.+. ||+
T Consensus 365 ~~~~~~~~l~a~v~~~-~~------------~~~~~~~~~~l~~~l~~~l~~~~~----~p~~i~~v~~~~lP~t~-GKi 426 (436)
T 3qov_A 365 ETVNNQDEMIVEVELS-DL------------STDNYIELEKIRRDIIRQLKDEIL----VTPKVKLVKKGSLPQSE-GKA 426 (436)
T ss_dssp EEETTEEEEEEEEEEC-TT------------CCCCHHHHHHHHHHHHHHHHHHHS----SCCEEEEECTTCCC-------
T ss_pred EcCCCCcEEEEEEEEc-Cc------------cccchhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCcccCcC-Ccc
Confidence 53 5778888886 30 000112357899999999999931 345899999 889888 997
Q ss_pred c
Q 012526 460 A 460 (461)
Q Consensus 460 ~ 460 (461)
.
T Consensus 427 ~ 427 (436)
T 3qov_A 427 V 427 (436)
T ss_dssp -
T ss_pred e
Confidence 4
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.4e-44 Score=369.53 Aligned_cols=342 Identities=18% Similarity=0.169 Sum_probs=264.7
Q ss_pred cccccccccccCcccC--CCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECCh-h
Q 012526 3 FSLPILTPVIAGKHYK--YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-W 76 (461)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~ 76 (461)
.++|++++......++ ....+++++++++|||||||.||+|+++|+++...+..+. ..+++.++|++++.+|+ +
T Consensus 68 ~~lP~~~~~~l~~~~p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 68 AKFPFSTKNDLRDNYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGL 147 (443)
T ss_dssp GGSCCBCHHHHHTTTTTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred HHCCCCcHHHHHhhCCCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcc
Confidence 3577777654333332 3445778999999999999999999999999877654433 36788999999999998 5
Q ss_pred hhHHHhhhhhhhccCeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHH
Q 012526 77 HVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY 153 (461)
Q Consensus 77 ~~~~~~~~~~~l~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (461)
|..++...+.++..|++++.. ++..+++.++++++|++.++|+++..|++.......+
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~------------------- 208 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD------------------- 208 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence 777776677778899998875 5788999999999999999999999988754332110
Q ss_pred HHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHH-HHH
Q 012526 154 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYE 232 (461)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~-~~~ 232 (461)
..+..+|.+++||+++++++.+ +.+
T Consensus 209 ------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~ 234 (443)
T 2y4o_A 209 ------------------------------------------------------PAESSLKIGIFGAEPWTQALRNEVET 234 (443)
T ss_dssp ------------------------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHH
T ss_pred ------------------------------------------------------cccCCceEEEECCCcCCHHHHHHHHH
Confidence 0124458999999999998744 445
Q ss_pred HhCCeeeeecccCCCccc-eeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhc
Q 012526 233 AIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 311 (461)
Q Consensus 233 ~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 311 (461)
.+|+++++.||+||+++. ......... .+ .+.+.+++.++|+|+++++++++|+.|||+|++. +.
T Consensus 235 ~~g~~v~~~YG~TE~~g~~~~~~~~~~~-~g-~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~ 300 (443)
T 2y4o_A 235 RVGIDALDIYGLSEVMGPGVACECVETK-DG-PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TK 300 (443)
T ss_dssp HHTCEEEEEEEETTTTEEEEEEECTTTC-CS-EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SC
T ss_pred HhCcCEEeccCchhhcCCeEEeccCCCC-Cc-eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------Cc
Confidence 679999999999997432 332222111 12 4557789999999988899999999999999973 23
Q ss_pred cccCCCCcccCCceEeeccCCCCCcccccC-CeE-----EEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeC
Q 012526 312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCG-GVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 385 (461)
Q Consensus 312 ~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~ 385 (461)
..| +++||+|||+|++++ + |.+ ++.||.||+|++ +|++|+|.+||++|.+||+|.+++|++.
T Consensus 301 ~~~-p~~~y~TGDl~~~~~----------~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~ 368 (443)
T 2y4o_A 301 EAM-PVIRYRTRDLTALLP----------PTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITL 368 (443)
T ss_dssp SSS-CCSSEEEEEEECEEC----------CSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred ccC-hhheeecCCEEEEcC----------CCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEE
Confidence 344 578999999999998 5 775 899999999997 8999999999999999999999988875
Q ss_pred C----CCeeEEEEEcCh--HHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEe--cCCCCCCCC
Q 012526 386 D----QRRPGAIIVPDK--EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFL 457 (461)
Q Consensus 386 ~----~~~~~a~vv~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~g 457 (461)
+ .+.+.++|++.+ +. .....+.++++++++++|+.+.. .+.++.++ ++.|.+.||
T Consensus 369 ~~~~~~~~~~a~v~~~~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~~G 431 (443)
T 2y4o_A 369 SRDGHMDRLDLAVELRSEAAA-------------SVTDGERAALARELQHRIKTMVG----VSSGVTVLAAGGIPATATG 431 (443)
T ss_dssp EEETTEEEEEEEEEECHHHHT-------------TCCHHHHHHHHHHHHHHHHHHTC----CCCEEEEECTTCSCCCTTS
T ss_pred ecCCCCceEEEEEEECCcccc-------------cchhhHHHHHHHHHHHHHHHHhC----CceEEEEeCCCcccCccCC
Confidence 3 356778888765 20 00123457899999999998751 23567888 489999999
Q ss_pred ccc
Q 012526 458 CLA 460 (461)
Q Consensus 458 ~~~ 460 (461)
|+.
T Consensus 432 Ki~ 434 (443)
T 2y4o_A 432 KAR 434 (443)
T ss_dssp CCC
T ss_pred cce
Confidence 974
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.1e-44 Score=366.40 Aligned_cols=342 Identities=19% Similarity=0.177 Sum_probs=262.9
Q ss_pred cccccccccccCccc--CCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECCh-h
Q 012526 3 FSLPILTPVIAGKHY--KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-W 76 (461)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~ 76 (461)
..+|++++......+ .....+++++++++|||||||.||+|+++|+++...+..+. ..+++.++|++++.+|+ +
T Consensus 66 ~~lP~~~~~~l~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 66 SRFPFTTKGDLRDSYPFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGL 145 (437)
T ss_dssp GGSCCBCHHHHHHTTTTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred HHCCCCCHHHHHhcCCCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccc
Confidence 356777665333322 23455778999999999999999999999999877654433 35788999999999998 7
Q ss_pred hhHHHhhhhhhhccCeEEEEc---chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHH
Q 012526 77 HVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY 153 (461)
Q Consensus 77 ~~~~~~~~~~~l~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (461)
|..++...+.++..|++++.. ++..+++.++++++|+++++|+++..|++.......+
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~------------------- 206 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD------------------- 206 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence 888877777788999998874 5788999999999999999999999998754332110
Q ss_pred HHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhHHHHH-H
Q 012526 154 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-E 232 (461)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~~~~~-~ 232 (461)
..+..+|.+++||+++++++.+.. +
T Consensus 207 ------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~ 232 (437)
T 2y27_A 207 ------------------------------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQ 232 (437)
T ss_dssp ------------------------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHH
T ss_pred ------------------------------------------------------cccCCeeEEEEcCccCCHHHHHHHHH
Confidence 012345899999999999875544 5
Q ss_pred HhCCeeeeecccCCCccc-eeccCCCCCCccccccCCCCeEEEEEeCCCCCcCCCCCceEEEEecCCccccccCCchhhc
Q 012526 233 AIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 311 (461)
Q Consensus 233 ~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 311 (461)
.+|+++++.||+||+++. ++....... . ..+.+.+++.++|+|+++++++++|+.|||+|++. +.
T Consensus 233 ~~g~~v~~~YG~TE~~g~~~~~~~~~~~-~-g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~ 298 (437)
T 2y27_A 233 RMGIDAVDIYGLSEVMGPGVASECVETK-D-GPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TK 298 (437)
T ss_dssp HHTSEEEEEEEETTTTEEEEEECCTTTC-S-SCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SC
T ss_pred HHCcCEEecCCchhhcCCeeEEecCCCC-C-ceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------Cc
Confidence 679999999999998432 333222111 1 25667789999999988899999999999999973 23
Q ss_pred cccCCCCcccCCceEeeccCCCCCcccccCCeE-----EEeccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCC
Q 012526 312 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD 386 (461)
Q Consensus 312 ~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l-----~i~GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~ 386 (461)
..| +++||+|||+|+++++ +|.+ ++.||.||+|++ +|++|+|.+||++|.+||+|.+++|++.+
T Consensus 299 ~~~-~~~~y~TGDl~~~~~~---------~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~ 367 (437)
T 2y27_A 299 EAL-PIIRYRTRDLTRLLPG---------TARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLT 367 (437)
T ss_dssp SSS-CCCSEEEEEEECEECC---------SSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEE
T ss_pred CCc-hhheeecCCEEEEeCC---------CCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEe
Confidence 344 5789999999999872 2774 899999999997 89999999999999999999988888743
Q ss_pred ----CCeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCCCCCccc
Q 012526 387 ----QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA 460 (461)
Q Consensus 387 ----~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~ 460 (461)
.+.+.++|++.++. .....+.++++++++++|+.+.. .+..+.+++ +.|.+. ||+.
T Consensus 368 ~~~~~~~l~a~v~~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~-GKi~ 429 (437)
T 2y27_A 368 KEGPLDVLTLNVEPCPET-------------APDTAAIQVAKQALAYDIKSLIG----VTAVINVLPVNGIERSV-GKAR 429 (437)
T ss_dssp EETTEEEEEEEECBCTTT-------------TTCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCTTCSCCCS-SSCC
T ss_pred ecCCCceEEEEEEECCCc-------------cchhhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCCccCCC-Ccce
Confidence 45677888876430 00113457899999999999851 335688884 778777 9974
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.3e-38 Score=328.41 Aligned_cols=249 Identities=23% Similarity=0.326 Sum_probs=199.6
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhhhcCCCC------CcEEEEECChhhhHHHhh-hhhhhc
Q 012526 17 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN------GDKFLSMLPPWHVYERAC-GYFIFS 89 (461)
Q Consensus 17 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~------~d~~~~~~p~~~~~~~~~-~~~~l~ 89 (461)
.......++++++|+|||||||.||||++||+++.+++......+++.+ +|++++++|++|.+++.. .+.++.
T Consensus 175 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~ 254 (480)
T 3t5a_A 175 YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPIL 254 (480)
T ss_dssp -CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHH
T ss_pred CCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHH
Confidence 3445567889999999999999999999999999998888888788777 999999999999999765 567799
Q ss_pred cCeEEEEc-------chhhHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012526 90 RGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG 162 (461)
Q Consensus 90 ~G~~~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (461)
.|+++++. ++..+++.++++++| +.++|+++..++.......
T Consensus 255 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~------------------------------ 303 (480)
T 3t5a_A 255 GGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD------------------------------ 303 (480)
T ss_dssp HTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG------------------------------
T ss_pred cCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc------------------------------
Confidence 99999884 567889999999999 8889998877765321000
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHHHHHhC------
Q 012526 163 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------ 235 (461)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~~~~~~------ 235 (461)
......+.++|.+++||+++++++ +++.+.++
T Consensus 304 -----------------------------------------~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~ 342 (480)
T 3t5a_A 304 -----------------------------------------DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQE 342 (480)
T ss_dssp -----------------------------------------GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCG
T ss_pred -----------------------------------------cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCCh
Confidence 000134566799999999999886 56666663
Q ss_pred CeeeeecccCCCccceeccCCCC-------------------------CCccccccCCCCeEEEEEeCCCCCcCCCCCce
Q 012526 236 VKVQVGYGLTESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKG 290 (461)
Q Consensus 236 ~~v~~~YG~tE~~~~~~~~~~~~-------------------------~~~~~~G~~~~~~~i~i~d~~~~~~~~~g~~G 290 (461)
..+++.||+||++..++...... ...+++|+|++ ++++|+|++++++++.|+.|
T Consensus 343 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~G 421 (480)
T 3t5a_A 343 RVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVG 421 (480)
T ss_dssp GGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCE
T ss_pred hhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEE
Confidence 47999999999998777654321 23458999999 99999998889999999999
Q ss_pred EEEEecCCccccccCCchhhccccC-----------CCCcccCCceEeeccCCCCCcccccCCeEEEecc
Q 012526 291 IVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 349 (461)
Q Consensus 291 el~v~~~~~~~gy~~~~~~~~~~f~-----------~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR 349 (461)
||+|+||+++.||+++|+.|++.|+ .++||+|||+|+++ ||+++|+||
T Consensus 422 El~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----------dG~l~~~GR 480 (480)
T 3t5a_A 422 EIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480 (480)
T ss_dssp EEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----------TTEEEECC-
T ss_pred EEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----------CCEEEEeCC
Confidence 9999999999999999999999985 56799999999984 699999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=1.6e-30 Score=259.05 Aligned_cols=244 Identities=18% Similarity=0.159 Sum_probs=174.9
Q ss_pred CCCCCCeEEEEecCCCCCCchhheechHHHHHHHHHH---hhhcCCCCCcEEEEECCh-hhhHHHhhhhhhhccCeEEEE
Q 012526 21 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY 96 (461)
Q Consensus 21 ~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~---~~~~~~~~~d~~~~~~p~-~~~~~~~~~~~~l~~G~~~~~ 96 (461)
..+++++++++|||||||.||+|+++|+++...+..+ ...+++.++|++++.+|+ +|..++...+.++..|+.++.
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 4578899999999999999999999999998887744 355678899999999999 999999887777888884443
Q ss_pred c--chh-----------------------hHHHHHhHhCCcEEEechhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhH
Q 012526 97 T--AVR-----------------------NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF 151 (461)
Q Consensus 97 ~--~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (461)
. ++. .+++.++++++|++.++|+++..|++......
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~------------------- 227 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVL------------------- 227 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHH-------------------
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhc-------------------
Confidence 2 344 77779999999999999999998876421110
Q ss_pred HHHHHHHHhcccccccCCCCCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeccCCCchhH-HHH
Q 012526 152 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 230 (461)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~gg~~l~~~~-~~~ 230 (461)
..+.++|.+++||+++++++ +.+
T Consensus 228 --------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~ 251 (369)
T 3hgu_A 228 --------------------------------------------------------QMKQSLAQITLGGTELNLDEIKFI 251 (369)
T ss_dssp --------------------------------------------------------HHHHHCSEEEEESSCCCHHHHHHH
T ss_pred --------------------------------------------------------cccCCeeEEEECCccCCHHHHHHH
Confidence 11122489999999999887 555
Q ss_pred H-HHh-CCeeeeecccCCCccceeccCCCCCCccccccC------CCCeEEEEEeCCCCCcCCCCCceEEEEecCCcccc
Q 012526 231 Y-EAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP------INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 302 (461)
Q Consensus 231 ~-~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~------~~~~~i~i~d~~~~~~~~~g~~Gel~v~~~~~~~g 302 (461)
. +.+ ++++++.||+||+++++..++.. ++|++ .++++++|+|+++++++++|+.|||+|++..-...
T Consensus 252 ~~~~~p~~~v~~~YG~TE~~~~~~~~~~~-----~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~ 326 (369)
T 3hgu_A 252 ASEILPDCEFSASYGSTSALGVSRSLLIT-----SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAF 326 (369)
T ss_dssp HHHTCTTSEEEEEEEEGGGTEEEEECCBC-----TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEE
T ss_pred HHHhCCCcEEEcccCchhhhcceeccccc-----cCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCcccc
Confidence 5 567 89999999999998766443211 47888 99999999998789999999999999997421111
Q ss_pred ccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCce
Q 012526 303 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 360 (461)
Q Consensus 303 y~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~ 360 (461)
+ ..|+|||+++..+. ..+..++....+..++|.++..++ .|.
T Consensus 327 l--------------~ry~tgD~~~~~~~-~~g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 327 Y--------------PRVAERDTAIRLPG-VSGFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp E--------------EEEEEEEEEEEECC-STTCSSCEEEEEEECC------------
T ss_pred c--------------ccccCCceEEEecC-CCCCcCcccccceeccccCCCcee-eec
Confidence 1 13899999988752 223333223356677888877776 553
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.97 E-value=1.5e-09 Score=87.60 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=64.4
Q ss_pred ccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCCC----eeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHH
Q 012526 348 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 423 (461)
Q Consensus 348 GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l 423 (461)
.|.||+|++ +|.||+|.|||++|.+||+|.++++++.+++ .+.++++..+. ........+++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~-------------~~~~~~~~~~l 66 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQL-------------FTDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTT-------------CCCCHHHHHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeec-------------cccccchhhhh
Confidence 489999998 8999999999999999999999999987543 45566666532 11112234567
Q ss_pred HHHHHHHHHHHhccCCCccccEEEec--CCCCCCCCcc
Q 012526 424 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 459 (461)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~ 459 (461)
.+.+++++..+..- . .++.+++ +.|++ +||+
T Consensus 67 ~~~i~~~l~~~~gv---~-~~v~~v~~~~lPrt-sGKi 99 (109)
T 3lax_A 67 TREITRQLKDEILV---T-PRVKLVPKGALPKS-EGKA 99 (109)
T ss_dssp HHHHHHHHHHHHSS---C-CEEEEECTTCSCCC----C
T ss_pred HHHHHHHHHHHhCC---c-cceEEEcCCeecCC-CCCc
Confidence 77788888776521 1 3577775 57775 7996
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.89 E-value=3.9e-09 Score=85.23 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=66.0
Q ss_pred ccccceEEcCCceeecchhHHHHHhcCccccEEEEEeCCC----CeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHH
Q 012526 348 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 423 (461)
Q Consensus 348 GR~~d~i~~~~G~~v~~~eIE~~l~~~p~V~~a~V~~~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l 423 (461)
||.||+|++ +|++|+|.+||++|.+||+|.++++++.++ +.+.+++++ ++. ......+.+++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~------------~~~~~~~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL------------FTDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT------------CCCCHHHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc------------cccchhHHHHH
Confidence 799999998 899999999999999999999887776543 356677776 320 00011245678
Q ss_pred HHHHHHHHHHHhccCCCccccEEEec--CCCCCCCCccc
Q 012526 424 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA 460 (461)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~ 460 (461)
.+.+++++...... .+ ++.+++ +.|++ +||+.
T Consensus 67 ~~~i~~~l~~~~~~---~~-~v~~v~~~~lPrt-sGKi~ 100 (109)
T 3gxs_A 67 TREITRQLKDEILV---TP-RVKLVPKGALPKS-EGKAV 100 (109)
T ss_dssp HHHHHHHHHHHHSS---CC-EEEEECTTCSCCC----CC
T ss_pred HHHHHHHHHHhhCC---ce-EEEEECCCCccCC-CCceE
Confidence 88888888754322 23 788998 88888 99973
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.87 E-value=9.5e-09 Score=106.22 Aligned_cols=145 Identities=13% Similarity=0.163 Sum_probs=90.3
Q ss_pred ceeEEeccCCCchhHHHHHHHh-CCeee-eecccCCCccceeccCCCCCCcccccc-CCCC-eEEEEEeCCCC-------
Q 012526 213 SKAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN------- 281 (461)
Q Consensus 213 ~~~i~~gg~~l~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~d~~~~------- 281 (461)
+..++.|| +.+-...+..-+ +.+++ ..|++||+- ++....+.+ .++..+. ..++ .-.+.++.+..
T Consensus 307 l~~~~tG~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~-~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~ 382 (609)
T 4b2g_A 307 LDVIVTGA--MAQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMS-KPSEVSYTIMPNMAYFEFLPHEHSSIPLSRD 382 (609)
T ss_dssp EEEECSGG--GGGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTS-CGGGCCEEECTTSCEEEEEEGGGTTSCCCSS
T ss_pred EEEEccCC--hHHHHHHHHHHcCCCccccCccccccee-eeeecCCCC-CcccCceeecCCcEEEEEEeccccccccccC
Confidence 34555555 444444444333 56666 899999963 333222221 1111121 1222 44556653322
Q ss_pred --------CcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccce
Q 012526 282 --------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 353 (461)
Q Consensus 282 --------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~ 353 (461)
..+..|+.+||+|+.. .|+|. |++||++++..... ....+.|.||.+++
T Consensus 383 ~~~~~v~l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~------~~p~i~~~gR~~~~ 439 (609)
T 4b2g_A 383 SPPRLVDLAHVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHN------SAPQFHFVRRKNVL 439 (609)
T ss_dssp SCCCCEEGGGCCTTCEEEEEEECT---TSCCS--------------EEEEEEEEEEEEET------TEEEEEEEEETTCC
T ss_pred CCCccccHhHcCCCCeEEEehhhh---hhhhh--------------eecCCEEEEeecCC------CCcEEEEEEecCCe
Confidence 2467899999999864 35543 99999999874110 13689999999999
Q ss_pred EEcCCceeecchhHHHHHhcC------c--cccEEEEEeC
Q 012526 354 IVLSTGENVEPLELEEAALRS------S--LIRQIVVIGQ 385 (461)
Q Consensus 354 i~~~~G~~v~~~eIE~~l~~~------p--~V~~a~V~~~ 385 (461)
|.+ .|+++++.+||+++.+. . .|.+..++..
T Consensus 440 l~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d 478 (609)
T 4b2g_A 440 LSI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFAD 478 (609)
T ss_dssp BCS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEE
T ss_pred EEc-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecC
Confidence 997 89999999999999842 2 3567776543
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.82 E-value=1.9e-07 Score=96.13 Aligned_cols=138 Identities=11% Similarity=0.089 Sum_probs=85.4
Q ss_pred CCchhHHHHHHHh-CCeee-eecccCCCccceeccCCCCCCcccccc-CCCC-eEEEEEeCCCC----------CcCCCC
Q 012526 222 SLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN----------EVLPAG 287 (461)
Q Consensus 222 ~l~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~d~~~~----------~~~~~g 287 (461)
.+.+-...+..-+ +.+++ ..|++||+ .+.....+.+. ++..+. ..|+ .-.+.++.+.. ..+..|
T Consensus 314 ~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~-~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G 391 (581)
T 4epl_A 314 SMEPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRLS-PEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIG 391 (581)
T ss_dssp GGGGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTSC-TTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTT
T ss_pred ChHHHHHHHHHHcCCCccccCceeccce-eeeeecCCCCC-ccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCC
Confidence 3444444444434 56766 89999996 33332222211 111111 2222 33455542211 246789
Q ss_pred CceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCceeecchhH
Q 012526 288 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL 367 (461)
Q Consensus 288 ~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~eI 367 (461)
+.+||+|+... |.|. |++||++++...+.. ...+.|.||.++++.+ .|++++..+|
T Consensus 392 ~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~------~p~~~~~gR~~~~l~~-~Ge~~~~~~v 447 (581)
T 4epl_A 392 EEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNN------TPQLKFICRRNLILSI-NIDKNTERDL 447 (581)
T ss_dssp CEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETT------EEEEEEEEETTCCBCS-SSCCBCHHHH
T ss_pred CeEEEEEeecc---ceee--------------EEcCCEEEEecccCC------CcEEEEEeecCCeEEe-eeeECCHHHH
Confidence 99999998652 4332 999999998752110 2479999999999998 8999999999
Q ss_pred HHHHhcC------c--cccEEEEEeC
Q 012526 368 EEAALRS------S--LIRQIVVIGQ 385 (461)
Q Consensus 368 E~~l~~~------p--~V~~a~V~~~ 385 (461)
|+++.+. . .|.+..++..
T Consensus 448 ~~al~~a~~~l~~~~~~l~eft~~~d 473 (581)
T 4epl_A 448 QLSVESAAKRLSEEKIEVIDFSSYID 473 (581)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred HHHHHHHHHhhcccCCeEEEEEEecC
Confidence 9999852 2 3667776654
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.78 E-value=3.6e-07 Score=94.31 Aligned_cols=145 Identities=12% Similarity=0.188 Sum_probs=87.1
Q ss_pred ceeEEeccCCCchhHHHHHHHh-CCeee-eecccCCCccceeccCCCCCCcccccc-CCCC-eEEEEEeCCCC-------
Q 012526 213 SKAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN------- 281 (461)
Q Consensus 213 ~~~i~~gg~~l~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~d~~~~------- 281 (461)
+..++.|| +.+-...+..-+ +.+++ ..|++||+ .+.....+.+ .+...+. ..++ +-.+.++.+..
T Consensus 302 l~~~~~G~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~-~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~ 377 (581)
T 4eql_A 302 IETVVTGS--MGQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLC-KPEDVSYTFMPNMSYFEFIPMDGGDKNDVVD 377 (581)
T ss_dssp EEEECSGG--GGGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTS-CGGGCCEEECTTSSEEEEEECSTTCCSSCEE
T ss_pred EEEEcCCC--hHHHHHHHHHHcCCCccccCccccccc-eeeeccCCCC-CcccCceeecCCcEEEEEEeccccCCCcEeC
Confidence 45566666 444444444434 56766 89999995 3332222221 1111221 1222 44566653221
Q ss_pred -CcCCCCCceEEEEecCCccccccCCchhhccccCCCCcccCCceEeeccCCCCCcccccCCeEEEeccccceEEcCCce
Q 012526 282 -EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 360 (461)
Q Consensus 282 -~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~f~~~~~~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~ 360 (461)
..+..|+.+||+|+.. .|.|. |++||++++...+.. ...+.|.||.+++|.+ .|+
T Consensus 378 l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~------~p~i~f~gR~~~~l~~-~Ge 433 (581)
T 4eql_A 378 LEDVKLGCTYEPVVTNF---AGLYR--------------MRVGDIVLVTGFYNN------APQFKFVRRENVVLSI-DSD 433 (581)
T ss_dssp GGGCCTTCEEEEEEECS---SSCCS--------------EECCEEEEEEEEETT------EEEEEEEEETTEEECS-SSC
T ss_pred HHHcCCCceEEEEEeec---cceee--------------EEcCCEEEEcccCCC------CcEEEEEEecCCEEEe-eee
Confidence 2356889999999865 23332 999999988741111 2579999999999997 899
Q ss_pred eecchhHHHHHhcCc--------cccEEEEEeC
Q 012526 361 NVEPLELEEAALRSS--------LIRQIVVIGQ 385 (461)
Q Consensus 361 ~v~~~eIE~~l~~~p--------~V~~a~V~~~ 385 (461)
+++..+||+++.+.. .|.+..++..
T Consensus 434 kl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~ 466 (581)
T 4eql_A 434 KTNEEDLFKAVSQAKLVLESSGLDLKDFTSYAD 466 (581)
T ss_dssp CEEHHHHHHHHHHC--------------CEEEE
T ss_pred ECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecC
Confidence 999999999999643 2556655543
No 42
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=52.94 E-value=47 Score=33.38 Aligned_cols=99 Identities=10% Similarity=-0.003 Sum_probs=66.8
Q ss_pred CCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc--
Q 012526 24 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-- 97 (461)
Q Consensus 24 ~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~-- 97 (461)
|+.++++.+..+.++ ..+|.+.+...+..+. ...++.++|++..+++-+. .+.. .+.++..|+..+..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT--TTHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc--cHHHHHHHHHHcCCEEeecCC
Confidence 455555544444333 4688888866554443 3458999999999987432 2222 34457788888875
Q ss_pred --chhhHHHHHhHhCCcEEEechhHHHHHHHHH
Q 012526 98 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGI 128 (461)
Q Consensus 98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 128 (461)
+.+.+...++..++.+++........+....
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 140 (550)
T 3rix_A 108 IYNERELLNSMNISQPTVVFVSKKGLQKILNVQ 140 (550)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH
Confidence 4677888999999999999888776665543
No 43
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=51.14 E-value=1.7e+02 Score=29.16 Aligned_cols=101 Identities=9% Similarity=0.063 Sum_probs=67.7
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEcc
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA 98 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~ 98 (461)
.|+.+|++....+..+. ..-.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS--IDYVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHhCCEEEccC
Confidence 56778877653221111 124678888865544433 445899999999998743 22333 344577888888753
Q ss_pred ----hhhHHHHHhHhCCcEEEechhHHHHHHH
Q 012526 99 ----VRNLKDDLQRYQPHYMISVPLVYETLYS 126 (461)
Q Consensus 99 ----~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 126 (461)
.+.+...++..++..++..+.....+..
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 5778889999999999998877665544
No 44
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=51.02 E-value=1e+02 Score=30.72 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=66.2
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.++++... +| -.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSS--PEFVLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHHhCCEEeccC
Confidence 56778766432 22 3578888865544433 346899999999998853 22333 34457788888775
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHHHH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSG 127 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 127 (461)
+.+.+...++..++.+++........+...
T Consensus 106 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~ 138 (536)
T 3ni2_A 106 PFSTPAELAKHAKASRAKLLITQACYYEKVKDF 138 (536)
T ss_dssp TTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHH
Confidence 467788899999999999988776665543
No 45
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=49.38 E-value=92 Score=30.77 Aligned_cols=93 Identities=18% Similarity=0.075 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.+|++. . +-.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..
T Consensus 19 ~pd~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 19 FPDRTAFMV-D--------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNC--SEMIELIGAVALIGAILLPVN 87 (509)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC--HHHHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEE-C--------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHhCCEEEecC
Confidence 467777664 1 24688888866555444 345889999999998753 23333 34457788888875
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHHH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLYS 126 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 126 (461)
+.+.+...++..++.+++..+.....+..
T Consensus 88 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 88 YRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp TTSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred CCCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 35678889999999999998776655433
No 46
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=46.98 E-value=1.4e+02 Score=28.89 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=66.0
Q ss_pred CCCCeEEEEecC--CCCCCchhheechHHHHHHHHHHhhh---cCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEE
Q 012526 23 GSDDIATYVYTS--GTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY 96 (461)
Q Consensus 23 ~~~~~a~i~~TS--GTTG~PK~v~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~ 96 (461)
.|+.+|++.... +.+| ....+|.+.+...+..+... .+. ++|++..+++-+ ..+.. .+.++..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG--LEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSS--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCc--HHHHHHHHHHHHhCcEEEe
Confidence 577888776542 2233 23568898887655554433 454 899999888743 23333 3445778888776
Q ss_pred cc-------hhhHHHHHhHhCCcEEEechhHHHHHHH
Q 012526 97 TA-------VRNLKDDLQRYQPHYMISVPLVYETLYS 126 (461)
Q Consensus 97 ~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 126 (461)
.+ .+.+...++..++.+++..+.....+..
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 53 3568889999999999998877655543
No 47
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=43.27 E-value=1.9e+02 Score=28.78 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=64.7
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.++++....+ ..-.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH--FRHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHhcCcEEEecC
Confidence 4667776643211 134678888865544433 446889999999998843 23333 34457788888875
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHHH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETLY 125 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 125 (461)
+.+.+...++..++.+++..+.....+.
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 3577888999999999999887665443
No 48
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=41.72 E-value=55 Score=23.38 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=27.1
Q ss_pred chhHHHHHhcCccccEEEEEeCCCCeeEEEEEcC
Q 012526 364 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD 397 (461)
Q Consensus 364 ~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~ 397 (461)
..++++.|.+.|.|.+|..+..+.+.+.-+.+.+
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d 48 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDT 48 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESS
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCCEEEEEEECC
Confidence 3789999999999999999877766666555554
No 49
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=40.54 E-value=1.7e+02 Score=29.33 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHhh---hc-CCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IV-PAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~---~~-~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~ 97 (461)
.|+.+|++.... .| ..-.+|.+.+...+..+.. .. ++.++|++..+++-+. .+.. .+.++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP--EWWLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCeEEEec
Confidence 567777765431 12 1246888888665444333 33 8899999999988432 3333 34457788888875
Q ss_pred ----chhhHHHHHhHhCCcEEEechhHHHHH
Q 012526 98 ----AVRNLKDDLQRYQPHYMISVPLVYETL 124 (461)
Q Consensus 98 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l 124 (461)
+.+.+...++..++.+++..+.....+
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 130 TIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 357788899999999999987766544
No 50
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=39.92 E-value=1.5e+02 Score=29.31 Aligned_cols=94 Identities=9% Similarity=-0.025 Sum_probs=64.2
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-- 97 (461)
.|+.+|++.. | -.+|.+.+...+..+. ...++.++|++..+++-+..+ ....+.++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 5667776532 1 3578888866554443 446889999999998854322 22234457788888775
Q ss_pred --chhhHHHHHhHhCCcEEEechhHHHHHHH
Q 012526 98 --AVRNLKDDLQRYQPHYMISVPLVYETLYS 126 (461)
Q Consensus 98 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 126 (461)
+.+.+...++..++..++..+.....+..
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 136 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNVTQ 136 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHHHH
Confidence 36778899999999999998877655433
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=39.40 E-value=2.1e+02 Score=28.18 Aligned_cols=93 Identities=14% Similarity=0.022 Sum_probs=64.2
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.+|++.. | ....+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~ 99 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNS--VEFCCLFYGAAKLGAVAVPIN 99 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHHTCEEEECC
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCC--HHHHHHHHHHHHhCcEEEecC
Confidence 5677776653 1 224688888866554443 445899999999998843 33333 34457888888875
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETL 124 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l 124 (461)
+.+.+...++..++.+++........+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (517)
T 3r44_A 100 TRLAAPEVSFILSDSGSKVVIYGAPSAPVI 129 (517)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cccCHHHHHHHHHhcCceEEEECCchHHHH
Confidence 356788899999999999877665444
No 52
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=38.37 E-value=2.1e+02 Score=28.64 Aligned_cols=96 Identities=9% Similarity=0.038 Sum_probs=64.3
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEcc
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA 98 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~ 98 (461)
.|+.+|++.... . ..-.+|.+.+...+..+. ...++.++|++..+++-+. .+.. .+.++..|+..+..+
T Consensus 24 ~p~~~a~~~~~~-~----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 24 SPNKKSCTFLNK-E----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGL--PLIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp CTTSEEEEEEET-T----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCeEEEEEcC-C----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--hHHHHHHHHHHhCcEEEEec
Confidence 567787766441 1 234688888866554433 4458899999999988543 2333 344577888877754
Q ss_pred h-------hhHHHHHhHhCCcEEEechhHHHHHH
Q 012526 99 V-------RNLKDDLQRYQPHYMISVPLVYETLY 125 (461)
Q Consensus 99 ~-------~~~~~~i~~~~~t~~~~~P~~~~~l~ 125 (461)
+ +.+...++..++.+++........+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 3 45677888999999998877665543
No 53
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=38.27 E-value=60 Score=22.95 Aligned_cols=32 Identities=13% Similarity=-0.110 Sum_probs=25.3
Q ss_pred hhHHHHHhcCccccEEEEEeCCCCeeEEEEEc
Q 012526 365 LELEEAALRSSLIRQIVVIGQDQRRPGAIIVP 396 (461)
Q Consensus 365 ~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~ 396 (461)
.++++.|.++|.|.+|..+..+.+.+.-+.+.
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~ 47 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGVYDIVVKVEAD 47 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSSCSEEEEEECS
T ss_pred HHHHHHHhCCCCeEEEEEEeccCCEEEEEEEC
Confidence 78999999999999999887766665554444
No 54
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=37.61 E-value=2.4e+02 Score=28.29 Aligned_cols=89 Identities=10% Similarity=-0.004 Sum_probs=61.2
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.+|++. . .-.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKS--IDLFIGILAVLKAGGAYVPID 120 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEEeC
Confidence 567777653 1 23578888866554433 345889999999988843 23333 34457788888875
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYE 122 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~ 122 (461)
+.+.+...++..++.+++..+....
T Consensus 121 ~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 121 IEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 3567888999999999998776543
No 55
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=37.46 E-value=1.9e+02 Score=28.43 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=59.8
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEcc
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA 98 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~ 98 (461)
.|+.+|++... + +..+|.+.+...+..+. ...++.++|++..+++-+. .+.. .+.++..|+..+..+
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA--DVVIAILALHRLGAVPALLN 85 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEEC
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCcEEEecC
Confidence 45667766421 1 24688888866554443 3458899999999988442 2333 344577888887753
Q ss_pred ----hhhHHHHHhHhCCcEEEe--chhHHH
Q 012526 99 ----VRNLKDDLQRYQPHYMIS--VPLVYE 122 (461)
Q Consensus 99 ----~~~~~~~i~~~~~t~~~~--~P~~~~ 122 (461)
.+.+...++..++..++. .+....
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 115 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQVAD 115 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CHHH
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhhhh
Confidence 567888899999999887 555433
No 56
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=32.12 E-value=3.1e+02 Score=27.55 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=63.0
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHH---hhhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.+|++..... | ....+|.+.+...+..+ ....++.++|++..+++-+.- ++. .+.++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeCC
Confidence 6788887765321 2 23567888876544443 345689999999999884322 333 34457788888774
Q ss_pred ---chhhHHHHHhHhCCcEEEechhH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLV 120 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~ 120 (461)
+.+.+...++..++..++..+..
T Consensus 143 ~~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 143 HMLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp TTCCHHHHHHHHHHHTCCEEEEESST
T ss_pred ccCCHHHHHHHHHhcCCCEEEEecch
Confidence 46788889999999999886543
No 57
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=31.18 E-value=2.3e+02 Score=28.28 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=59.6
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.+|++. . .-.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERG--FDMVVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHHCCEEEEcC
Confidence 567777654 1 22588888866554433 346899999999998743 23333 34457788888875
Q ss_pred ---chhhHHHHHhHhCCcEEEechhH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLV 120 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~ 120 (461)
+.+.+...++..++.+++.....
T Consensus 157 ~~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 157 PQFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CCChHHHHHHHHHhcCCCEEEecchh
Confidence 35678888999999999886543
No 58
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=30.88 E-value=1.5e+02 Score=29.63 Aligned_cols=82 Identities=13% Similarity=0.007 Sum_probs=57.7
Q ss_pred heechHHHHHHHHHHhh---hcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc----chhhHHHHHhHhCCcEE
Q 012526 43 VMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYM 114 (461)
Q Consensus 43 v~~sh~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~----~~~~~~~~i~~~~~t~~ 114 (461)
-.+|.+.+...+..+.. ..++.++|++..+++-+. .+.. .+.++..|+..+.. +.+.+...++..++.++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 128 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCE--EFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIV 128 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT--TTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEE
Confidence 45888888665554443 458999999999887432 2222 33446788887775 36788899999999999
Q ss_pred EechhHHHHHHH
Q 012526 115 ISVPLVYETLYS 126 (461)
Q Consensus 115 ~~~P~~~~~l~~ 126 (461)
+..+.....+..
T Consensus 129 i~~~~~~~~~~~ 140 (548)
T 2d1s_A 129 FSSKKGLDKVIT 140 (548)
T ss_dssp EECTTTHHHHHH
T ss_pred EEcHHHHHHHHH
Confidence 998877655443
No 59
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=28.73 E-value=1.7e+02 Score=28.73 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=56.2
Q ss_pred eechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc----chhhHHHHHhHhCCcEEE
Q 012526 44 MLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMI 115 (461)
Q Consensus 44 ~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~----~~~~~~~~i~~~~~t~~~ 115 (461)
.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+.. +.+.+...++..++.+++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS--VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC--HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 578888866554433 345899999999998843 33333 34457788888875 357788899999999999
Q ss_pred echhHHHHH
Q 012526 116 SVPLVYETL 124 (461)
Q Consensus 116 ~~P~~~~~l 124 (461)
..+.....+
T Consensus 106 ~~~~~~~~~ 114 (503)
T 4fuq_A 106 CDPSKRDGI 114 (503)
T ss_dssp ECGGGTTTT
T ss_pred ECchhhHHH
Confidence 987665443
No 60
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=28.70 E-value=92 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=28.9
Q ss_pred chhHHHHHhcCccccEEEEEeCCCCeeEEEEEcChH
Q 012526 364 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 399 (461)
Q Consensus 364 ~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~ 399 (461)
..++++.|.++|.|.+|..+..+.+.+.-+.+.+.+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D~ll~v~~~d~~ 50 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVE 50 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGG
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCEEEEEEECCHH
Confidence 478999999999999999988777777766666543
No 61
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=27.51 E-value=2.7e+02 Score=27.59 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=56.8
Q ss_pred heechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEcc-----------hhhHHHHHh
Q 012526 43 VMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA-----------VRNLKDDLQ 107 (461)
Q Consensus 43 v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~-----------~~~~~~~i~ 107 (461)
-.+|.+.+...+..+. ...++.++|++..+++-+. .+.. .+.++..|+..+..+ ...+...++
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSS--EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 4688888866554443 3458899999999988543 3333 344577888777753 466788899
Q ss_pred HhCCcEEEechhHHHHHH
Q 012526 108 RYQPHYMISVPLVYETLY 125 (461)
Q Consensus 108 ~~~~t~~~~~P~~~~~l~ 125 (461)
..++..++........+.
T Consensus 126 ~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHCCSEEEECGGGHHHHH
T ss_pred hcCCCEEEecHHHHHHHH
Confidence 999999998877655443
No 62
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.95 E-value=1.6e+02 Score=23.50 Aligned_cols=48 Identities=4% Similarity=-0.066 Sum_probs=34.5
Q ss_pred hhHHHHHhcCccccEEEEEeCCCCeeEEEEE-cChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHH
Q 012526 365 LELEEAALRSSLIRQIVVIGQDQRRPGAIIV-PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434 (461)
Q Consensus 365 ~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 434 (461)
.++.+.+.++|.|.+|..+..+.+.+.-+.+ . +.+++.+++.+.|.+.
T Consensus 83 ~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~~----------------------d~~~l~~~~~~~l~~~ 131 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGVGRYNIIVRLLLPK----------------------DIKDAENLISEFLQRI 131 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEESSCSEEEEEEEES----------------------SHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCeEEEeEecCCCCEEEEEEEcC----------------------CHHHHHHHHHHHhhcC
Confidence 5889999999999999988766665555555 3 3456666676666654
No 63
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=26.38 E-value=2.9e+02 Score=27.40 Aligned_cols=86 Identities=17% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.+|++.. .-.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..
T Consensus 43 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~Gav~vpl~ 111 (544)
T 3o83_A 43 HPHSLAIICG---------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNV--AEFYIVFFALLKAGVVVLNAL 111 (544)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSS--HHHHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEcC---------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC--HHHHHHHHHHHHhCcEEecCC
Confidence 5777887641 34588888865544433 446899999999888743 23333 34457788877764
Q ss_pred ---chhhHHHHHhHhCCcEEEechh
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPL 119 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~ 119 (461)
+...+...++..++.+++....
T Consensus 112 ~~~~~~~l~~~l~~~~~~~li~~~~ 136 (544)
T 3o83_A 112 YSHRQYELNAFIKQIQPKLLIGSRQ 136 (544)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEEETT
T ss_pred CCCCHHHHHHHHHhcCeeEEEEccc
Confidence 3567888999999999988654
No 64
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=24.13 E-value=4e+02 Score=27.25 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHH---hh-hcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YD-IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~---~~-~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~- 97 (461)
.++.+|++.... .+| ....+|.+.+...+..+ .. ..++.++|++..++|...-+- ...+.++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v-~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI-ITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 477788765432 222 13468888886554443 33 568899999999998543322 2233446778777764
Q ss_pred ---chhhHHHHHhHhCCcEEEechhH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLV 120 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~ 120 (461)
+++.+...++..++.++++....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 46788899999999999986553
No 65
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=23.09 E-value=1.9e+02 Score=31.39 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=63.6
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.+|++... +| -.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+..
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns--~e~~v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC--PEFVLSFLAASFRGATATAAN 144 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSC--HHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCC--HHHHHHHHHHHHcCCEEEeeC
Confidence 46778766422 22 4578888765544433 446899999999998854 33333 34457788888775
Q ss_pred ---chhhHHHHHhHhCCcEEEechhHHHHH
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPLVYETL 124 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l 124 (461)
+++.+...++..++.+++..+.....+
T Consensus 145 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 145 PFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp TTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 467788899999999999887665444
No 66
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=22.42 E-value=3e+02 Score=26.93 Aligned_cols=74 Identities=14% Similarity=0.067 Sum_probs=51.7
Q ss_pred eechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc----chhhHHHHHhHhCCcEEE
Q 012526 44 MLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMI 115 (461)
Q Consensus 44 ~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~----~~~~~~~~i~~~~~t~~~ 115 (461)
.+|.+.+...+..+. ...++.++|++..+++-+ ..+.. .+.++..|+..+.. +.+.+...++..++.+++
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQT--YDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSS--HHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 478888866554443 446889999999888743 23333 33447788877764 467788899999999998
Q ss_pred echh
Q 012526 116 SVPL 119 (461)
Q Consensus 116 ~~P~ 119 (461)
....
T Consensus 107 ~~~~ 110 (521)
T 3l8c_A 107 AIEE 110 (521)
T ss_dssp ESSC
T ss_pred ecCc
Confidence 7543
No 67
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.21 E-value=1.8e+02 Score=23.72 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=34.1
Q ss_pred chhHHHHHhcCccccEEEEEeCCCCeeEEEEEcChHHHHHHHHHcCCCcCCccccCcHHHHHHHHHHHHHH
Q 012526 364 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 434 (461)
Q Consensus 364 ~~eIE~~l~~~p~V~~a~V~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 434 (461)
..++.+.|.++|.|.+|..+....+.+.-+.+. +.+++.+++.+.+.+.
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG~~D~~l~v~~~----------------------d~~~l~~~l~~~l~~~ 127 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVP----------------------DIAAYDAFYKRMIAKI 127 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCSSCSEEEEEEES----------------------SHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCEEEeeecCCCCCEEEEEEEC----------------------CHHHHHHHHHHHhhcC
Confidence 468889999999999999876555555544443 3456667776666554
No 68
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=21.74 E-value=4.9e+02 Score=26.45 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=61.7
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhhhhhhhccCeEEEEc--
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~-- 97 (461)
.++.+|++... ..+|. .-.+|.+.+...+..+. ...|+.++|++..++|...-+- ...+.++..|+..+..
T Consensus 89 ~pd~~Al~~~~-~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v-va~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA-VAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEEC-SSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEEc-CCCCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHcCcEEEecCC
Confidence 36777776532 22222 34688888866554443 3468999999999998543322 2233446778777764
Q ss_pred --chhhHHHHHhHhCCcEEEechh
Q 012526 98 --AVRNLKDDLQRYQPHYMISVPL 119 (461)
Q Consensus 98 --~~~~~~~~i~~~~~t~~~~~P~ 119 (461)
+++.+...++..++.++++...
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCHHHHHHHHHhcCCCEEEEcCc
Confidence 4678888999999999988654
No 69
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=20.20 E-value=4.1e+02 Score=26.15 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=58.5
Q ss_pred CCCCeEEEEecCCCCCCchhheechHHHHHHHHHHh---hhcCCCCCcEEEEECChhhhHHHhh-hhhhhccCeEEEEc-
Q 012526 23 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 97 (461)
Q Consensus 23 ~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~- 97 (461)
.|+.+|++.. .-.+|.+.+...+..+. ...++.++|++..+++-+. .+.. .+.++..|+..+..
T Consensus 38 ~p~~~A~~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl~ 106 (539)
T 1mdb_A 38 YGDRIAITCG---------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIK--EFFEVIFALFRLGALPVFAL 106 (539)
T ss_dssp HTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSH--HHHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEeC---------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHcCeEEecCC
Confidence 4677776531 24588888866554443 3458999999998887432 3333 34457788877764
Q ss_pred ---chhhHHHHHhHhCCcEEEechh
Q 012526 98 ---AVRNLKDDLQRYQPHYMISVPL 119 (461)
Q Consensus 98 ---~~~~~~~~i~~~~~t~~~~~P~ 119 (461)
+.+.+...++..++..++..+.
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vi~~~~ 131 (539)
T 1mdb_A 107 PSHRSSEITYFCEFAEAAAYIIPDA 131 (539)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESE
T ss_pred CCCCHHHHHHHHHhCCCCEEEeccc
Confidence 3567888899999999988654
Done!