BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012527
         (461 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
 pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
          Length = 292

 Score = 33.9 bits (76), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 24/148 (16%)

Query: 78  NNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHI-------- 129
           +NS A+ + F R +   G+  +      Y K     +   F  +D  STI I        
Sbjct: 78  SNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGR 137

Query: 130 -ADKEYFETLQRELELYDCVLYEMVAS------RESLEKRRNSVDTKKLKGSRSRGFNIL 182
            A + + ETL R  E  DC   + V        R SLE+     D   L G        +
Sbjct: 138 SAIEIHVETLARIFE--DCPNVKGVXDATGNLLRPSLERMACGEDFNLLTGEDGTALGYM 195

Query: 183 -----GCIQ--RQMARILMLDFQLDCLD 203
                GCI     +A  L  DFQ  CL+
Sbjct: 196 AHGGHGCISVTANVAPALCADFQQACLN 223


>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
           Tyrosine Phosphatase Shp-1
          Length = 595

 Score = 33.1 bits (74), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 183 GCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGE 228
           G +Q +   I+ L + L+C D  +E WYH  +     + L   KGE
Sbjct: 84  GVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGE 129


>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
          Length = 532

 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 183 GCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGE 228
           G +Q +   I+ L + L+C D  +E WYH  +     + L   KGE
Sbjct: 84  GVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGE 129


>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
 pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
          Length = 525

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 183 GCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGE 228
           G ++ +   ++ L + L+C D  +E W+H  L  +  + L  EKG+
Sbjct: 86  GQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGK 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,146,737
Number of Sequences: 62578
Number of extensions: 466049
Number of successful extensions: 1001
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 11
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)