BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012527
         (461 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2V693|MUTS2_SULSY MutS2 protein OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=mutS2
           PE=3 SV=1
          Length = 763

 Score = 32.7 bits (73), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 313 KRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAID----EGHNRIAILYGGGHMPDLG 368
           ++ T + T+   D+  S  +IG+    AI+ L + ID    EG+    I++G G    L 
Sbjct: 670 EKTTFKITKSKTDITPSINLIGKTKEEAIKELEKYIDKVILEGYTTFKIIHGYG-AGVLR 728

Query: 369 RRLREEFDLLPSRVQW 384
             +RE  D LP ++++
Sbjct: 729 NAVREYLDKLPFKLKY 744


>sp|A1UR54|ISPG_BARBK 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bartonella
           bacilliformis (strain ATCC 35685 / KC583) GN=ispG PE=3
           SV=1
          Length = 418

 Score = 32.3 bits (72), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 246 VQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIG---SVCADVGSQPPEYPELEALSMLD 302
           ++ ++ K++  WR K     R L + ++G ++ G   S  AD+G   P   EL A  +  
Sbjct: 323 IEANLCKNMPIWREKYPGIER-LKVAVMGCIVNGPGESKHADIGISLPGTGELPAAPVFI 381

Query: 303 FGAAMKVFLAKRLTSEFTQVTAD 325
            G  +KV     +  EF ++ +D
Sbjct: 382 EGKKVKVLRGHHIAEEFEEILSD 404


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,758,604
Number of Sequences: 539616
Number of extensions: 6433423
Number of successful extensions: 17410
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17408
Number of HSP's gapped (non-prelim): 5
length of query: 461
length of database: 191,569,459
effective HSP length: 121
effective length of query: 340
effective length of database: 126,275,923
effective search space: 42933813820
effective search space used: 42933813820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)