Query 012527
Match_columns 461
No_of_seqs 102 out of 106
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 03:34:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00261 traB pheromone shutd 100.0 1.6E-34 3.4E-39 295.6 12.8 200 118-373 3-216 (380)
2 COG1916 Uncharacterized homolo 100.0 4.9E-34 1.1E-38 288.6 14.1 205 120-379 13-231 (388)
3 PF01963 TraB: TraB family; I 99.6 2.8E-15 6.1E-20 141.6 10.1 213 112-381 3-258 (259)
4 KOG2860 Uncharacterized conser 99.3 2.2E-12 4.7E-17 130.3 3.5 201 119-370 82-311 (359)
5 COG3735 Uncharacterized protei 98.5 6E-07 1.3E-11 90.7 10.6 55 323-382 241-298 (299)
6 cd01967 Nitrogenase_MoFe_alpha 62.4 13 0.00029 38.3 5.3 50 332-382 265-315 (406)
7 TIGR01282 nifD nitrogenase mol 59.4 21 0.00045 38.6 6.2 52 330-383 313-365 (466)
8 COG4126 Hydantoin racemase [Am 54.0 23 0.0005 35.6 5.0 43 335-380 157-200 (230)
9 cd01973 Nitrogenase_VFe_beta_l 52.0 35 0.00077 36.7 6.5 52 330-383 282-335 (454)
10 PF03808 Glyco_tran_WecB: Glyc 51.6 4.4 9.5E-05 37.7 -0.3 57 93-158 55-115 (172)
11 TIGR01284 alt_nitrog_alph nitr 51.6 26 0.00056 37.7 5.4 53 330-382 302-355 (457)
12 TIGR01860 VNFD nitrogenase van 49.5 28 0.00061 37.5 5.3 51 332-382 306-357 (461)
13 PRK02842 light-independent pro 45.6 36 0.00079 36.0 5.3 33 351-383 289-321 (427)
14 cd01976 Nitrogenase_MoFe_alpha 45.6 39 0.00085 35.8 5.6 50 331-382 279-329 (421)
15 TIGR02529 EutJ ethanolamine ut 44.7 42 0.0009 32.8 5.2 48 332-379 174-222 (239)
16 cd01977 Nitrogenase_VFe_alpha 42.2 45 0.00097 35.1 5.3 51 332-382 267-318 (415)
17 PF00148 Oxidored_nitro: Nitro 42.1 20 0.00044 36.8 2.8 50 331-382 250-300 (398)
18 PF04187 DUF399: Protein of un 40.5 16 0.00034 35.4 1.6 35 336-371 174-211 (213)
19 TIGR01862 N2-ase-Ialpha nitrog 40.0 48 0.001 35.4 5.2 51 332-382 296-347 (443)
20 COG2054 Uncharacterized archae 38.5 40 0.00087 33.4 3.9 44 342-385 16-59 (212)
21 COG0041 PurE Phosphoribosylcar 32.0 35 0.00076 32.7 2.3 36 337-372 43-79 (162)
22 TIGR02932 vnfK_nitrog V-contai 31.7 1.3E+02 0.0028 32.6 6.9 51 332-383 288-339 (457)
23 PRK00865 glutamate racemase; P 31.3 86 0.0019 31.1 5.1 35 340-376 166-200 (261)
24 TIGR01861 ANFD nitrogenase iro 31.3 76 0.0016 35.1 5.1 54 332-385 307-361 (513)
25 PF02629 CoA_binding: CoA bind 30.9 42 0.00092 28.1 2.5 47 353-406 4-54 (96)
26 TIGR01285 nifN nitrogenase mol 29.9 73 0.0016 34.0 4.6 52 332-385 291-343 (432)
27 cd00316 Oxidoreductase_nitroge 29.5 99 0.0021 31.6 5.3 53 331-385 258-311 (399)
28 cd01966 Nitrogenase_NifN_1 Nit 28.4 70 0.0015 34.0 4.2 54 330-385 278-332 (417)
29 cd01968 Nitrogenase_NifE_I Nit 28.4 98 0.0021 32.5 5.2 49 333-382 267-316 (410)
30 PRK15080 ethanolamine utilizat 28.2 1.1E+02 0.0023 30.4 5.2 47 332-378 201-248 (267)
31 PF13580 SIS_2: SIS domain; PD 28.0 74 0.0016 28.3 3.6 36 339-376 23-58 (138)
32 PF08484 Methyltransf_14: C-me 26.1 76 0.0016 29.7 3.5 33 342-379 59-91 (160)
33 COG3811 Uncharacterized protei 25.3 52 0.0011 28.3 2.0 22 204-225 36-57 (85)
34 TIGR00249 sixA phosphohistidin 25.3 1E+02 0.0022 28.1 4.1 34 340-376 88-121 (152)
35 cd01979 Pchlide_reductase_N Pc 24.9 1.2E+02 0.0026 31.8 5.0 51 331-383 255-306 (396)
36 cd04240 AAK_UC AAK_UC: Unchara 24.5 1.1E+02 0.0024 29.3 4.4 33 352-384 24-56 (203)
37 cd03466 Nitrogenase_NifN_2 Nit 24.5 90 0.0019 33.2 4.1 51 331-383 279-330 (429)
38 TIGR01279 DPOR_bchN light-inde 24.3 1.2E+02 0.0025 32.2 4.9 50 332-383 254-304 (407)
39 cd01971 Nitrogenase_VnfN_like 23.2 1.2E+02 0.0026 32.1 4.8 54 330-383 267-324 (427)
40 COG1979 Uncharacterized oxidor 23.0 1.1E+02 0.0024 32.8 4.3 54 332-392 12-67 (384)
41 PRK14478 nitrogenase molybdenu 22.5 1.4E+02 0.003 32.4 5.2 51 333-384 304-355 (475)
42 CHL00076 chlB photochlorophyll 22.0 79 0.0017 34.7 3.2 29 352-380 305-333 (513)
43 cd01972 Nitrogenase_VnfE_like 21.9 1.8E+02 0.0038 30.9 5.7 54 330-385 271-326 (426)
44 KOG2912 Predicted DNA methylas 21.6 1.4E+02 0.003 32.2 4.6 58 362-421 254-328 (419)
45 TIGR01283 nifE nitrogenase mol 21.1 1.8E+02 0.0038 31.2 5.5 50 332-383 306-356 (456)
46 cd01974 Nitrogenase_MoFe_beta 21.0 1.3E+02 0.0029 31.9 4.5 51 331-383 282-333 (435)
47 PRK14476 nitrogenase molybdenu 20.9 1.1E+02 0.0025 32.9 4.1 52 331-384 290-342 (455)
48 PRK10848 phosphohistidine phos 20.8 1.2E+02 0.0026 27.9 3.7 21 350-373 98-118 (159)
49 KOG4606 Uncharacterized conser 20.4 1.3E+02 0.0028 27.6 3.6 25 363-387 9-34 (126)
No 1
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=100.00 E-value=1.6e-34 Score=295.61 Aligned_cols=200 Identities=20% Similarity=0.237 Sum_probs=168.6
Q ss_pred CeEEEEEEeeecccHHHHHHHHHhhc--cCCEEEEEeecCchhhhhccCChhhhhccC----cCCccc----c-cchHHH
Q 012527 118 FLQVDLVSTIHIADKEYFETLQRELE--LYDCVLYEMVASRESLEKRRNSVDTKKLKG----SRSRGF----N-ILGCIQ 186 (461)
Q Consensus 118 ~~~V~LvGTaHVs~~SYyd~Vq~~le--~yDaVL~ELV~sR~~L~~~~~P~~~k~ld~----r~~r~~----s-~L~a~Q 186 (461)
+++|+|+||+|||++| .++|++.|+ +||+||||||++|++ ++.+| .|+++|. |+++.+ + +|+++|
T Consensus 3 ~~~i~lvGTAHvS~~S-~~eV~~~I~~~~PD~VaVELd~~R~~--~l~~~-~~~~~di~~vlk~g~~~~~l~~~~La~~q 78 (380)
T TIGR00261 3 EKTIYILGTAHVSKKS-SEEVANLIEILKPDYIAVELDERRYH--SLLNT-KWRNLDIDKVLKQGNAFFLIINLILANFQ 78 (380)
T ss_pred CcEEEEEecccCCHHH-HHHHHHHHHHhCCCEEEEeCCHHHHH--HHhhh-hhccCCHHHHhhcCchHHHHHHHHHHHHH
Confidence 6799999999999999 999999998 999999999999999 77666 6777772 667765 3 589999
Q ss_pred HHHHHHcCccccccccccccccccccCCCHHHHHHHHHh---cCCCcchhhccccccccccccccCCCCCCchHHHHHhh
Q 012527 187 RQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLE---KGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLW 263 (461)
Q Consensus 187 rrLA~~lGL~pQLD~iDY~~~nw~hADl~geEm~~l~~e---~G~~l~~~dRd~~~~aT~atlkra~~~~l~~wr~kl~l 263 (461)
|++++++|++| |+||++|+++ .|.|+.++|||+.. |++| +|+.+++|.+ +++
T Consensus 79 ~~l~~~~gi~P------------------G~Em~~Ai~~A~e~g~~v~LiDRdI~i-----Tl~R-~w~~~~~~eK-~kl 133 (380)
T TIGR00261 79 KKLGEEQGIKP------------------GSEMKTAIEKAKKHGIPLILIDRDIET-----TLKR-AWISITFFEK-AKI 133 (380)
T ss_pred HHHHHHcCCCC------------------CHHHHHHHHHHHHcCCcEEEeCCCHhH-----HHHH-HHHhCCHHHH-HHH
Confidence 99999999998 9999999844 49999999999955 5999 5999999955 766
Q ss_pred hhhccCchhhHHHhhhhhhccCCCCCCChhHHHHhhhccHHHHHHHHHHhhhhhhhhhcccccccCccchhhhhHHHHHH
Q 012527 264 ASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEA 343 (461)
Q Consensus 264 ls~v~P~Pl~glLLl~gv~a~~g~~~~s~~EiEaLk~~D~l~A~kl~~Ak~l~sE~a~~~~dl~~~~VLI~ERNr~aae~ 343 (461)
++ +++.+.. ..+++|+|+|++.|.++.+ +.|+.+..|.+ +++||+|||+||+.+
T Consensus 134 ~~--------------~l~~~~~--~~~e~~ie~l~~~d~L~~~--------~~e~~~~~P~l--~~~LIdERD~ymA~~ 187 (380)
T TIGR00261 134 IS--------------SLFSSTD--AKIEDEIEKLLEQDALSKI--------MKELSKISPKV--KKVLIDERDEFMANK 187 (380)
T ss_pred HH--------------HHHhccc--cCCHHHHHHhhhhhHHHHH--------HHHHhhhCCch--hhHHHHHHHHHHHHH
Confidence 33 1221222 1267889999999999998 88888888888 999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCChHHHHHHHHH
Q 012527 344 LRRAIDEGHNRIAILYGGGHMPDLGRRLRE 373 (461)
Q Consensus 344 Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~e 373 (461)
|++...++ ++|.+|+||||+||+.+.|.+
T Consensus 188 L~~l~~~~-~~VvaVVGAGHl~GI~~~l~~ 216 (380)
T TIGR00261 188 LLEGEGNK-NIIVAVVGAGHVSGIMRTLKK 216 (380)
T ss_pred HHHhhcCC-CcEEEEECcchhhhHHHHHhC
Confidence 99877543 466679999999999999984
No 2
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=288.60 Aligned_cols=205 Identities=23% Similarity=0.319 Sum_probs=173.2
Q ss_pred EEEEEEeeecccHHHHHHHHHhhc--cCCEEEEEeecCchhhhhccCChhhhhcc--C--cCCccc----c-cchHHHHH
Q 012527 120 QVDLVSTIHIADKEYFETLQRELE--LYDCVLYEMVASRESLEKRRNSVDTKKLK--G--SRSRGF----N-ILGCIQRQ 188 (461)
Q Consensus 120 ~V~LvGTaHVs~~SYyd~Vq~~le--~yDaVL~ELV~sR~~L~~~~~P~~~k~ld--~--r~~r~~----s-~L~a~Qrr 188 (461)
+|+++||||||++| .++|++.|+ +||+|+||||+.|++ ++.++..+ ++| + |+|+.| + +|+.+||+
T Consensus 13 ~v~iiGTAHVS~~S-veeVrr~I~~~~PDaVAVELd~~R~~--sLl~~~~~-~ldl~~vlk~Gk~~~~l~~~lLa~~Qrk 88 (388)
T COG1916 13 EVYILGTAHVSKDS-VEEVRRIILEEKPDAVAVELDEARLL--SLLGGSRE-ELDLAQVLKEGKAFFLLAGLLLAYFQRK 88 (388)
T ss_pred eEEEEeeeecCHhH-HHHHHHHHHhcCCCeEEEEecHHHHH--HHhcCCcc-cCCHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 99999999999999 999999998 999999999999999 77666655 666 2 788887 2 68999999
Q ss_pred HHHHcCccccccccccccccccccCCCHHHHHHHH---HhcCCCcchhhccccccccccccccCCCCCCchHHHHHhhhh
Q 012527 189 MARILMLDFQLDCLDYQAENWYHADLDYETFKLLQ---LEKGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLWAS 265 (461)
Q Consensus 189 LA~~lGL~pQLD~iDY~~~nw~hADl~geEm~~l~---~e~G~~l~~~dRd~~~~aT~atlkra~~~~l~~wr~kl~lls 265 (461)
+++++|++| |+||++|+ +|.|.|+.++||||+. | +|| .|..+++|.+ ++.++
T Consensus 89 lg~~~Gv~P------------------GsEmk~AIe~A~e~ga~V~lIDRdI~v--T---l~R-~~~~~~~~EK-lK~~~ 143 (388)
T COG1916 89 LGKELGVKP------------------GSEMKAAIEAARELGAPVALIDRDIGV--T---LRR-AWAKMPFWEK-LKLIS 143 (388)
T ss_pred HHHhcCCCC------------------hHHHHHHHHHHHHcCCCEEEecccHHH--H---HHH-HHHhCCHHHH-HHHHH
Confidence 999999998 99999998 5559999999999965 4 999 5999999955 76643
Q ss_pred hccCchhhHHHhhhhhhccCCCCCCChhHHHHhhhccHHHHHHHHHHhhhhhhhhhcccccccCccchhhhhHHHHHHHH
Q 012527 266 RVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALR 345 (461)
Q Consensus 266 ~v~P~Pl~glLLl~gv~a~~g~~~~s~~EiEaLk~~D~l~A~kl~~Ak~l~sE~a~~~~dl~~~~VLI~ERNr~aae~Lr 345 (461)
.|+.+ +. .+..++.|++.|++.|.++++ +.||.+..|.+ ++|||+|||+||+.+|.
T Consensus 144 ---------~L~~~-~~----~~g~~e~ei~~l~~~D~~~al--------~~efr~~~P~~--~~vLIDERd~ymA~nll 199 (388)
T COG1916 144 ---------SLISG-LL----FPGQSEIEIDELKQEDVLSAL--------MQEFRRFSPTV--YKVLIDERDRYMARNLL 199 (388)
T ss_pred ---------HHHHh-cc----cCCCchHHHHHHhhhhHHHHH--------HHHHHHhChhH--HHHHHHHHHHHHHHHHH
Confidence 23232 22 222267899999999999999 99999999999 99999999999999999
Q ss_pred HHHHhCCCEEEEEecCCChHHHHHHHHHhcCCcc
Q 012527 346 RAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLP 379 (461)
Q Consensus 346 ~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g~vp 379 (461)
+..+.+.+ |.+|+||||.+||.++|.+. ...|
T Consensus 200 ~~~~~~~~-vvAVVGAGH~~GI~~~L~~~-~~~p 231 (388)
T COG1916 200 EIVSILND-VVAVVGAGHVRGIERYLKNS-DSAP 231 (388)
T ss_pred HHHcccCc-EEEEEccccHHHHHHHHhcc-ccCC
Confidence 99877656 44699999999999999973 4443
No 3
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=99.60 E-value=2.8e-15 Score=141.63 Aligned_cols=213 Identities=19% Similarity=0.274 Sum_probs=124.1
Q ss_pred CCCCCCCeEEEEEEeeecccHHHHH---HHHHhhccCCEEEEEe----------------ecCchhhhhccCChhhhhcc
Q 012527 112 WSLLPPFLQVDLVSTIHIADKEYFE---TLQRELELYDCVLYEM----------------VASRESLEKRRNSVDTKKLK 172 (461)
Q Consensus 112 ~~~~~p~~~V~LvGTaHVs~~SYyd---~Vq~~le~yDaVL~EL----------------V~sR~~L~~~~~P~~~k~ld 172 (461)
|.+-+++.++.|+||+|+++++.|. .+.+.+.++|+|++|+ .++...+.....|+.+++++
T Consensus 3 W~i~~~g~~~yL~GT~H~~~~~~~~~~~~i~~a~~~sd~v~~E~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~l~ 82 (259)
T PF01963_consen 3 WKISKNGKTVYLLGTIHVSPKSFYPLPDAIEEALKKSDVVVVELDMSDPEAQAQMQQAMMLPDGKTLKDLLSPEEYARLE 82 (259)
T ss_pred EEEEcCCeEEEEEeccCCCchhhhhhHHHHHHHHhcCCEEEEecccccHHHHHHHHhhccCCCcccHHHhcCHHHHHHHH
Confidence 4455668999999999999999433 3455556999999999 11122233556677776666
Q ss_pred C---cCCcc------ccc--------chHHHHHHHHHcCccccccccccccccccccCCCHHHHHHHHHhcCCCcc-hhh
Q 012527 173 G---SRSRG------FNI--------LGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLF-TFA 234 (461)
Q Consensus 173 ~---r~~r~------~s~--------L~a~QrrLA~~lGL~pQLD~iDY~~~nw~hADl~geEm~~l~~e~G~~l~-~~d 234 (461)
. ..+.. +.+ ...+|+.+...+|+++ +.++++... |.++. +-+
T Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~gvd~------------------~l~~~A~~~--~~~v~~Le~ 142 (259)
T PF01963_consen 83 ELLAEYGLPLEMLRKLKPWAAAFLLSLSAFQKGYSPEYGVDP------------------YLEQRAAEE--GKPVVGLET 142 (259)
T ss_pred HHHHhcCCCHHHHHcCCHHHHHHHHHHHHHhccccccccccH------------------HHHHHHHHh--CCCcccccC
Confidence 3 11110 110 1233445555556664 555555432 22222 223
Q ss_pred ccccccccccccccCCCCCCchHHHHHhhhhhccCchhhHHHhhhhhhccCCCCCC-ChhHHHHhhhccHHHHHHHHHHh
Q 012527 235 RDMTLKSTKAMVQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPP-EYPELEALSMLDFGAAMKVFLAK 313 (461)
Q Consensus 235 Rd~~~~aT~atlkra~~~~l~~wr~kl~lls~v~P~Pl~glLLl~gv~a~~g~~~~-s~~EiEaLk~~D~l~A~kl~~Ak 313 (461)
++... + +.+ +++.+.. ... |...+. ....... ....+++.+.+|+ +++
T Consensus 143 ~~~q~--~---~~~----~~~~~~q-~~~-------------L~~~l~-~~~~~~~~~~~~~~~~~~gd~-~~l------ 191 (259)
T PF01963_consen 143 REEQI--T---LLR----SLPLDEQ-VKM-------------LRETLD-DIEDGEKMLEQLIEAWKNGDL-DAL------ 191 (259)
T ss_pred HHHHH--H---HHh----cCCHHHH-HHH-------------HHHHHh-ccccchHHHHHHHHHHHccCH-HHH------
Confidence 33311 1 111 2244433 211 122111 2122222 4446688899999 555
Q ss_pred hhhhhhhh--cccccccCccchhhhhHHHHHHHHHHHHhCCCEEEEEecCCChH---HHHHHHHHhcCCcccc
Q 012527 314 RLTSEFTQ--VTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMP---DLGRRLREEFDLLPSR 381 (461)
Q Consensus 314 ~l~sE~a~--~~~dl~~~~VLI~ERNr~aae~Lr~a~~~g~k~IaVvYGAGHlP---Gl~r~L~ee~g~vp~~ 381 (461)
...+.+ ..|.. +++||++||++++++|.+.++++ +++.|++|||||+ |+.+.|++ .||....
T Consensus 192 --~~~~~~~~~~p~~--~~~ll~~RN~~~~~~i~~~l~~~-~~~fvvVGa~HL~G~~gvl~lLr~-~Gy~V~~ 258 (259)
T PF01963_consen 192 --MELMKEDESFPEL--YEVLLDERNRRWAEKIEELLKEG-GTVFVVVGAGHLPGEDGVLDLLRK-KGYTVEP 258 (259)
T ss_pred --HHHHHhcccCHHH--HHHHHHHHhHHHHHHHHHHHhcC-CCEEEEEcchhccchhhHHHHHHh-CCceeec
Confidence 222222 44555 78899999999999999999876 4455799999999 77888884 4998654
No 4
>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]
Probab=99.26 E-value=2.2e-12 Score=130.26 Aligned_cols=201 Identities=18% Similarity=0.206 Sum_probs=143.7
Q ss_pred eEEEEEEeeecccHHHHHHHHHhhc--cCCEEEEEeecCchhhhhccCChhhhhccCc---------------CCccccc
Q 012527 119 LQVDLVSTIHIADKEYFETLQRELE--LYDCVLYEMVASRESLEKRRNSVDTKKLKGS---------------RSRGFNI 181 (461)
Q Consensus 119 ~~V~LvGTaHVs~~SYyd~Vq~~le--~yDaVL~ELV~sR~~L~~~~~P~~~k~ld~r---------------~~r~~s~ 181 (461)
.+|+|+||+|++.+| -+.|.+.++ ++|.|.+|||++|.+.....+|...++...= .|+.|..
T Consensus 82 s~i~lVgTah~S~Es-~~~v~~virtv~pd~V~vElCrsr~sIis~~ep~l~se~evl~g~~f~~~~~~~~~~gG~~~L~ 160 (359)
T KOG2860|consen 82 STIYLVGTAHFSKES-QEDVSNVIRAVQPDFVMVELCRSRISIISADEPQLLSEAEVLNGAKFRGIFEEAGKIGGIVFLL 160 (359)
T ss_pred ceeEEEEeeecCccc-cccHHHHhhccCcceeehhhccchhhcccccChhhhccCcccCCcceeeeeccccccCceEehh
Confidence 599999999999999 999999999 9999999999999886666666554443310 1122223
Q ss_pred chHHHHHHHHHcCccccccccccccccccccCCCHHHHHHHHHhc----CCCcchhhccccccccccccccCCCCCCchH
Q 012527 182 LGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEK----GESLFTFARDMTLKSTKAMVQPSIPKDLDPW 257 (461)
Q Consensus 182 L~a~QrrLA~~lGL~pQLD~iDY~~~nw~hADl~geEm~~l~~e~----G~~l~~~dRd~~~~aT~atlkra~~~~l~~w 257 (461)
+...|-+....++-.+ +.||+++-++. |--+++-||.|.. |++|+ +..+.+|
T Consensus 161 lrsv~a~~~~dLdmaa------------------~gefr~a~~efs~~~g~~v~lgDrpiei-----tLqRa-~~eLs~~ 216 (359)
T KOG2860|consen 161 LRSVSAKDLGDLDMAA------------------GGEFRRASREFSTLMGCLVVLGDRPIEI-----TLQRA-LSELSSW 216 (359)
T ss_pred hhhhhhhhcccccccc------------------chhHHHHhhhhccCCCceEEecCCccee-----eHHHH-HHhcchh
Confidence 4555555555555554 67888877655 5567778999944 59995 8888888
Q ss_pred HHHHhhhhhccCchhhHHHhhhhhhccCCCCCCChhHHHHhhhccHHHHHHHHHHhhhhhhhhhcccccccCccchhhhh
Q 012527 258 RSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERN 337 (461)
Q Consensus 258 r~kl~lls~v~P~Pl~glLLl~gv~a~~g~~~~s~~EiEaLk~~D~l~A~kl~~Ak~l~sE~a~~~~dl~~~~VLI~ERN 337 (461)
+. +.+ ..-++ ..-.......|.|.+++.|+.+.+ +.+++..-|.. --|++.|||
T Consensus 217 ~a-~~l--------------v~~vt-~s~~~s~~t~eve~c~q~~Lveql--------~~~~a~~vp~~--~lvlv~eRd 270 (359)
T KOG2860|consen 217 QA-VVL--------------VGHVT-FSKKNSIQTEEVENCKQTDLVEQL--------TIEMANFVPAL--SLVLVQERD 270 (359)
T ss_pred he-eeE--------------EEEEE-EeeccccchhhhhhhhHHhHHHHH--------HHHHHhhHHHH--HHHHHHHHH
Confidence 65 222 11122 111122378889999999999988 77777777766 678999999
Q ss_pred HHHHHHHHHHHHh---C-----CCEEEEEecCCChHHHHHH
Q 012527 338 RAAIEALRRAIDE---G-----HNRIAILYGGGHMPDLGRR 370 (461)
Q Consensus 338 r~aae~Lr~a~~~---g-----~k~IaVvYGAGHlPGl~r~ 370 (461)
-|+.-.|...... | .-.+.+|||-||.+||.+.
T Consensus 271 ~yl~~slelif~v~~~~gq~~~~~mvvvVvgi~~~sG~~~~ 311 (359)
T KOG2860|consen 271 LYLCHSLELIFTVWLRGGQQILPYMVVVVVGIGHVSGIYLA 311 (359)
T ss_pred hhhccchhheeeecccCCccccceEEEEEEEEEecchhhhh
Confidence 9998888765543 2 1346689999999999764
No 5
>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=6e-07 Score=90.65 Aligned_cols=55 Identities=31% Similarity=0.343 Sum_probs=39.5
Q ss_pred ccccccCccchhhhhHHHHHHHHHHHHhCCCEEEEEecCCChHH---HHHHHHHhcCCccccc
Q 012527 323 TADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPD---LGRRLREEFDLLPSRV 382 (461)
Q Consensus 323 ~~dl~~~~VLI~ERNr~aae~Lr~a~~~g~k~IaVvYGAGHlPG---l~r~L~ee~g~vp~~~ 382 (461)
.++. +.+||-+||+.++++ +...-.+.+.-|++||||+|| +.+-|+ +.||....+
T Consensus 241 ~~~~--~~~li~~RN~~wad~--~~~~l~~G~~fvaVGAlHL~G~e~L~e~Lr-k~g~t~trv 298 (299)
T COG3735 241 YADL--YDVLITQRNRAWADK--KTPLLQGGRYFVAVGALHLPGPEGLVELLR-KDGFTVTRV 298 (299)
T ss_pred hHHH--HHHHHHHHHHHHHHh--hccccCCCCEEEEeccccccCcccHHHHHH-HcCCeeeec
Confidence 4556 889999999999998 222222344447999999997 667777 458876544
No 6
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=62.41 E-value=13 Score=38.33 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.1
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+|++..+.+.+.+.+.... .+++++|.+|.+|..++.+ +..|+|++|...
T Consensus 265 ~i~~~~~~~~~~l~~~~~~l~gkrv~I~~~~~~~~~~~~-~l~elG~~v~~~ 315 (406)
T cd01967 265 VIAEEEARIKPELEKYRERLKGKKVIIYTGGARSWHVIA-ALRELGMEVVAA 315 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCEEEEEccCcchHHHHH-HHHHcCCEEEEE
Confidence 4555555555656555442 4588988779999999995 555999998654
No 7
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=59.43 E-value=21 Score=38.59 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=32.7
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
++|-.||. .+-+.|.+.... .+||++ +||+|+-|+..-.+.+|+|++|..+.
T Consensus 313 ~~I~~e~~-~~~~~ld~~~~~L~GKrv~-i~~g~~~~~~~~~~l~ELGmevv~~g 365 (466)
T TIGR01282 313 EVIAKYQP-AVDAVIAKYRPRLEGKTVM-LYVGGLRPRHVIGAFEDLGMEVIGTG 365 (466)
T ss_pred HHHHHHHH-HHHHHHHHHHHhcCCCEEE-EECCCCcHHHHHHHHHHCCCEEEEEe
Confidence 44555554 444444433332 347874 78888888777667779999987443
No 8
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=53.96 E-value=23 Score=35.60 Aligned_cols=43 Identities=28% Similarity=0.490 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccc
Q 012527 335 ERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPS 380 (461)
Q Consensus 335 ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~ 380 (461)
++++.+....++++++ |.+.| +.|++-|-++..+|+.+|| +|+
T Consensus 157 ~~~~~l~~~~~~a~~edgAeaI--iLGCAGms~la~~Lq~~~g-vPV 200 (230)
T COG4126 157 EAEALLVIEAAEALKEDGAEAI--ILGCAGMSDLADQLQKAFG-VPV 200 (230)
T ss_pred HHHHHHHHHHHHHhhhcCCCEE--EEcCccHHHHHHHHHHHhC-CCc
Confidence 3456666667777775 44555 7899999999999999999 665
No 9
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=52.01 E-value=35 Score=36.72 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=33.3
Q ss_pred ccchhhhhHHHHHHHHH-HHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 330 SVIIGERNRAAIEALRR-AIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~-a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
+.|+.||.++ .+.+.+ .... .+++++|+=+..|.-|+.+-|. |+|++|+-+.
T Consensus 282 e~i~~er~~~-~~~~~~~~~~~l~Gkrv~i~g~~~~~~~l~~fl~-elGm~~~~~~ 335 (454)
T cd01973 282 ESLVRERGIA-IDALADLAHMFFANKKVAIFGHPDLVIGLAEFCL-EVEMKPVLLL 335 (454)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHHH-HCCCeEEEEE
Confidence 4577888665 333333 2221 4588865533468888888888 8999987644
No 10
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=51.60 E-value=4.4 Score=37.66 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=46.1
Q ss_pred CCCccceeEEEEEeeecCCCCCCCCCeEEEEEEeeecc--cHHHHHHHHHhhc--cCCEEEEEeecCchh
Q 012527 93 GGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIA--DKEYFETLQRELE--LYDCVLYEMVASRES 158 (461)
Q Consensus 93 g~~~~eLQTAvv~~rkr~~~~~~~p~~~V~LvGTaHVs--~~SYyd~Vq~~le--~yDaVL~ELV~sR~~ 158 (461)
|+.+..++.+...+++++| .+.++|+-| + +++..+++.+.|+ ++|+|++=|=.++..
T Consensus 55 G~~~~~~~~~~~~l~~~yP--------~l~ivg~~~-g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 55 GGSEEVLEKAAANLRRRYP--------GLRIVGYHH-GYFDEEEEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred eCCHHHHHHHHHHHHHHCC--------CeEEEEecC-CCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 7778899999999999987 577888844 3 5555899999998 999999987777655
No 11
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=51.58 E-value=26 Score=37.68 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=36.9
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+-+|.+|-+..-+.|...... +++|++|.-|+.+.=++.+.|.+|+||+|..+
T Consensus 302 e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~ 355 (457)
T TIGR01284 302 ERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLEDELGMEVVAV 355 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 346788877766666544332 46899743345555589999998999998775
No 12
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=49.48 E-value=28 Score=37.48 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=35.2
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+|.++-+....+|...... .++|++|..|+-|.-++.+.|.+|+||+|+..
T Consensus 306 ~I~~e~~~~~~~Ld~~~~~L~GkrvaI~~~~~~~~~~~~~l~~ElGmevv~~ 357 (461)
T TIGR01860 306 VIAEEYAKYKPKLDWYKERLQGKKMCIWTGGPRLWHWTKALEDDLGMQVVAM 357 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHHHhCCCEEEEE
Confidence 5566655555566544332 46899754455577799999999999998765
No 13
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=45.59 E-value=36 Score=36.03 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=25.8
Q ss_pred CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 351 GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 351 g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
.+++++|+.++.+.=++.+.|.||+||+|..+.
T Consensus 289 ~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~ 321 (427)
T PRK02842 289 RGKRVFFLPDSQLEIPLARFLSRECGMELVEVG 321 (427)
T ss_pred CCcEEEEECCchhHHHHHHHHHHhCCCEEEEeC
Confidence 358897665566788899999988999996554
No 14
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.55 E-value=39 Score=35.83 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=32.6
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+|=.|| +.+.+.|.+.... ..|+++ +||+++.|+....+.+|+||+|+.+
T Consensus 279 ~i~~e~-~~~~~~l~~~~~~L~Gkrv~-i~~g~~~~~~~~~~l~elGmevv~~ 329 (421)
T cd01976 279 VIAEYK-PAMEAVIAKYRPRLEGKTVM-LYVGGLRPRHYIGAYEDLGMEVVGT 329 (421)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCCEEE-EECCCCcHHHHHHHHHHCCCEEEEE
Confidence 343444 4455555554443 358885 7777777777667778999998864
No 15
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=44.66 E-value=42 Score=32.84 Aligned_cols=48 Identities=8% Similarity=0.189 Sum_probs=37.5
Q ss_pred chhhhhHHHHHHHHHHHHhC-CCEEEEEecCCChHHHHHHHHHhcCCcc
Q 012527 332 IIGERNRAAIEALRRAIDEG-HNRIAILYGGGHMPDLGRRLREEFDLLP 379 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~g-~k~IaVvYGAGHlPGl~r~L~ee~g~vp 379 (461)
+|..+-+.+.+.+++.+.+. .+.|.++=|+..+||+.+.|.+.||+..
T Consensus 174 ~i~~~~~~i~~~i~~~l~~~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v 222 (239)
T TIGR02529 174 VVKPVYQKMASIVKRHIEGQGVKDLYLVGGACSFSGFADVFEKQLGLNV 222 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECchhcchhHHHHHHHHhCCCc
Confidence 55667777888888888753 4788655567789999999999999853
No 16
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=42.16 E-value=45 Score=35.13 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=35.5
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+|.++-+....+|.+.... ++++|+|.-|+.|.-++.+-|.+|+||+|...
T Consensus 267 ~i~~~~~~~r~~l~~~~~~l~Gk~vai~~~~~~~~~la~~l~~elG~~v~~i 318 (415)
T cd01977 267 VIAEEMAKWKPELDWYKERLKGKKVCIWTGGPKLWHWTKVIEDELGMQVVAM 318 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHHHhcCCEEEEE
Confidence 4555544444555433332 56999865578899999999988999999653
No 17
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=42.12 E-value=20 Score=36.78 Aligned_cols=50 Identities=30% Similarity=0.292 Sum_probs=34.2
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
.|..+| +.+.+.+.+.... ++++|+|.-++.|.-++.+-|. |+||+|..+
T Consensus 250 ~i~~~~-~~~~~~l~~~~~~l~g~~v~i~~~~~~~~~l~~~L~-elG~~v~~v 300 (398)
T PF00148_consen 250 EIAEER-ERAEDALADYRERLGGKRVAIYGDPDRALGLARFLE-ELGMEVVAV 300 (398)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTT-EEEEESSHHHHHHHHHHHH-HTT-EEEEE
T ss_pred HHHHHH-HHHHHHHHhhHHhhcCceEEEEcCchhHHHHHHHHH-HcCCeEEEE
Confidence 355556 5555556553332 4689987777799999999999 899998755
No 18
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=40.55 E-value=16 Score=35.45 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHhCCCEEEEEecCCChH---HHHHHH
Q 012527 336 RNRAAIEALRRAIDEGHNRIAILYGGGHMP---DLGRRL 371 (461)
Q Consensus 336 RNr~aae~Lr~a~~~g~k~IaVvYGAGHlP---Gl~r~L 371 (461)
||+.|++.|.+.+.. ..++.++-|.||.. |+-.+|
T Consensus 174 ~D~~MA~~i~~~~~~-~~~vv~i~G~gH~~~~~Gvp~~L 211 (213)
T PF04187_consen 174 WDATMAESIAAALHP-GRPVVVIAGNGHVRKGLGVPARL 211 (213)
T ss_dssp HHHHHHHHHHH-S----SEEEEEEEHHHH-TTTSHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCeEEEEeCcchhcCCCchhHHh
Confidence 999999999999944 56777899999984 444444
No 19
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=40.03 E-value=48 Score=35.40 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=35.1
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+|.++-+...+.|.+.... ++++|+|..|.-+.-++.+.+..|+||+|+.+
T Consensus 296 ~i~~~~~~~~~~l~~~~~~l~gkrvai~~~~~~~~~~~~~ll~elGm~v~~~ 347 (443)
T TIGR01862 296 VIAEEKAKWKPELDYYKERLQGKRVCLYIGGSRLWHWIGSAEEDLGMEVVAV 347 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEECCchhHHHHHHHHHHHCCCEEEEe
Confidence 5666666666666655443 46899754355555688887888999998776
No 20
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=38.46 E-value=40 Score=33.36 Aligned_cols=44 Identities=36% Similarity=0.662 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcCCccccceeE
Q 012527 342 EALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWI 385 (461)
Q Consensus 342 e~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W~ 385 (461)
+.+.+++..-.+.|+||-|+|-+.+++|..-++||+--+..-|.
T Consensus 16 ~~~~~ale~~~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwm 59 (212)
T COG2054 16 AAVKEALENLQRSILIVPGGGIFADLVRKIDEEFGLSDSASHWM 59 (212)
T ss_pred HHHHHHHHhhcceEEEecCchHHHHHHHHHHHhcCCCccHHHHH
Confidence 33555555434679999999999999999999999987777774
No 21
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=31.98 E-value=35 Score=32.71 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhCCCE-EEEEecCCChHHHHHHHH
Q 012527 337 NRAAIEALRRAIDEGHNR-IAILYGGGHMPDLGRRLR 372 (461)
Q Consensus 337 Nr~aae~Lr~a~~~g~k~-IaVvYGAGHlPGl~r~L~ 372 (461)
-+.|.+..+++.++|.+. |+.==||.|+|||...++
T Consensus 43 Pe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T 79 (162)
T COG0041 43 PEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKT 79 (162)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcC
Confidence 356777788888788754 444456789999999987
No 22
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=31.71 E-value=1.3e+02 Score=32.56 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=32.4
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
|+.||.+++-..++..... .+++++|+-+..|.-|+.+-|. |+|+.|.-+.
T Consensus 288 i~~er~~~~d~~~d~~~~~l~Gkrv~i~g~~~~~~~l~~fl~-Elg~~~~~~~ 339 (457)
T TIGR02932 288 LVRERGIALDALADLAHMFFANKKVAIFGHPDLVIGLAEFCL-EVELEPVLLL 339 (457)
T ss_pred HHHHHHHHHHHHHHhHHHHHcCCeeEEEcCHHHHHHHHHHHH-HCCCeEEEEE
Confidence 6778766543333322221 4588875545568899999777 7899876443
No 23
>PRK00865 glutamate racemase; Provisional
Probab=31.35 E-value=86 Score=31.09 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 340 AIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 340 aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
+.+.++....+|.+.| |.|+.|+|.+.+.+++.+|
T Consensus 166 l~~~l~~l~~~g~d~i--ILGCTh~p~l~~~i~~~~~ 200 (261)
T PRK00865 166 LREYLAPLLAAGIDTL--VLGCTHYPLLKPEIQQVLG 200 (261)
T ss_pred HHHHHHHHhcCCCCEE--EECCcCHHHHHHHHHHHcC
Confidence 3344444433455665 8899999999999987765
No 24
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=31.30 E-value=76 Score=35.06 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=35.9
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccceeE
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWI 385 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W~ 385 (461)
+|.++-+....+|...... .+||++|.-|+-|.-++.+.|.+|+|++|+.+-..
T Consensus 307 ~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~ 361 (513)
T TIGR01861 307 IIDEETARWKPELDWYKERLKGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSK 361 (513)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHhCCCEEEEEecc
Confidence 4565554444455323222 46899755466688999999998999998776443
No 25
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=30.94 E-value=42 Score=28.08 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=32.0
Q ss_pred CEEEEEecCCCh--HHHHHHHHHhcCCccccceeEEEEeecccccccc--chhhHHHH
Q 012527 353 NRIAILYGGGHM--PDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSS--SFPFLKTM 406 (461)
Q Consensus 353 k~IaVvYGAGHl--PGl~r~L~ee~g~vp~~~~W~tAw~i~~~~~~~~--~~~~~~~~ 406 (461)
.+| +++|+||+ ..+ ....+..||... -++++++.+.-.+ .+|....|
T Consensus 4 ~~v-~ivGag~~G~a~~-~~~~~~~g~~i~-----~~~dv~~~~~G~~i~gipV~~~~ 54 (96)
T PF02629_consen 4 TNV-IIVGAGNLGRALL-YNGFSMRGFGIV-----AVFDVDPEKIGKEIGGIPVYGSM 54 (96)
T ss_dssp EEE-EEETTTSHHHHHH-HHHHHHHCECEE-----EEEEECTTTTTSEETTEEEESSH
T ss_pred CeE-EEECCCCcHHHHH-HhHHHHcCCCCE-----EEEEcCCCccCcEECCEEeeccH
Confidence 566 59999999 666 667778888754 5788888654433 45544333
No 26
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=29.92 E-value=73 Score=34.05 Aligned_cols=52 Identities=10% Similarity=-0.005 Sum_probs=36.5
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccceeE
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWI 385 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W~ 385 (461)
+-.+|.+ +.+.+.+.... ++++++|..|+-|.-++.+-|. |+||+|..+-+-
T Consensus 291 ~~~~r~~-~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~-elGm~v~~~~~~ 343 (432)
T TIGR01285 291 FERQRRQ-LQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFT-SMGAQIVAAVTT 343 (432)
T ss_pred HHHHHHH-HHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHH-HCCCEEEEEEeC
Confidence 4455533 35556555443 5688976666667799999987 799999887765
No 27
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=29.48 E-value=99 Score=31.57 Aligned_cols=53 Identities=26% Similarity=0.282 Sum_probs=35.9
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccceeE
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWI 385 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W~ 385 (461)
++-.+| +.+.+.+.+.... +.++++|+.++.|.-++.+.|. ++|+++..+...
T Consensus 258 ~i~~~~-~~~~~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~-e~G~~v~~~~~~ 311 (399)
T cd00316 258 VIARER-ARLLDALADYHEYLGGKKVAIFGDGDLLLALARFLL-ELGMEVVAAGTT 311 (399)
T ss_pred HHHHHH-HHHHHHHHHHHHHhcCCEEEEECCCcHHHHHHHHHH-HCCCEEEEEEeC
Confidence 344444 4444555544332 4688888888888899998888 699998777653
No 28
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=28.41 E-value=70 Score=33.96 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=37.5
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccceeE
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWI 385 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W~ 385 (461)
+.|+.||.+ +.+.+...... +.++++|..|..+.-|+.+-|. |+||+|.-+-+.
T Consensus 278 ~~i~~er~~-~~~~~~d~~~~l~gkrvai~~~~~~~~~l~~~L~-ElG~~~~~~~~~ 332 (417)
T cd01966 278 EKIRRQRAQ-LQDAMLDGHFYLGGKRVAIALEPDLLAALSSFLA-EMGAEIVAAVAT 332 (417)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhCCcEEEEEeCHHHHHHHHHHHH-HCCCEEEEEEEC
Confidence 347788855 45666554442 4688875555557889999998 899999875543
No 29
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=28.39 E-value=98 Score=32.46 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred hhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 333 IGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 333 I~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
|.+..+.+.+.|.+.... +.++++|.-++.|.-++.+-|+ |+||++..+
T Consensus 267 i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~-elGm~v~~~ 316 (410)
T cd01968 267 IAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSALQ-DLGMEVVAT 316 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHH-HCCCEEEEE
Confidence 344334444445444332 4688876555669999999775 899997666
No 30
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=28.23 E-value=1.1e+02 Score=30.44 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=34.7
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCc
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLL 378 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~v 378 (461)
+|..|-+.+++.+++.+.. ..+.|.++=|+..+|||.+.+++.||+.
T Consensus 201 ii~~~~~~i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~lg~~ 248 (267)
T PRK15080 201 VVKPVVEKMASIVARHIEGQDVEDIYLVGGTCCLPGFEEVFEKQTGLP 248 (267)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEECCcccchhHHHHHHHHhCCC
Confidence 5566767777888888765 3477854444555899999999999974
No 31
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=27.99 E-value=74 Score=28.34 Aligned_cols=36 Identities=22% Similarity=0.530 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 339 AAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 339 ~aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
.+++.+.+.+.+| .+| .+.|+||.-.++.++..+++
T Consensus 23 ~aa~~i~~~~~~g-g~i-~~~G~G~S~~~a~~~~~~~~ 58 (138)
T PF13580_consen 23 KAADLIAEALRNG-GRI-FVCGNGHSAAIASHFAADLG 58 (138)
T ss_dssp HHHHHHHHHHHTT---E-EEEESTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CEE-EEEcCchhhhHHHHHHHHHh
Confidence 3455566666655 555 48999999999998887776
No 32
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=26.06 E-value=76 Score=29.67 Aligned_cols=33 Identities=36% Similarity=0.409 Sum_probs=12.6
Q ss_pred HHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcCCcc
Q 012527 342 EALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLP 379 (461)
Q Consensus 342 e~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g~vp 379 (461)
+.|++..++ +++|+ +|||||-=- .|..-+|..+
T Consensus 59 ~~L~~~~~~-gk~I~-~yGA~~kg~---tlln~~g~~~ 91 (160)
T PF08484_consen 59 EFLEKLKAE-GKRIA-GYGAGAKGN---TLLNYFGLDN 91 (160)
T ss_dssp HHHHHHHHT-T--EE-EE---SHHH---HHHHHHT--T
T ss_pred HHHHHHHHc-CCEEE-EECcchHHH---HHHHHhCCCc
Confidence 334433334 48884 999998532 3333445543
No 33
>COG3811 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.32 E-value=52 Score=28.33 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=19.4
Q ss_pred cccccccccCCCHHHHHHHHHh
Q 012527 204 YQAENWYHADLDYETFKLLQLE 225 (461)
Q Consensus 204 Y~~~nw~hADl~geEm~~l~~e 225 (461)
|.++||.++|.|-+-|+++-+.
T Consensus 36 ~tRdGw~l~dctlavF~kLKrK 57 (85)
T COG3811 36 YTRDGWLLPDCTLAVFRKLKRK 57 (85)
T ss_pred ecccccccCCccHHHHHHHHhc
Confidence 7899999999999999986643
No 34
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=25.28 E-value=1e+02 Score=28.07 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 340 AIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 340 aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
+.+.|++...++.++|+|| ||.|+|..-+..-.|
T Consensus 88 ~~~~l~~~~~~~~~~vliV---gH~P~i~~l~~~l~~ 121 (152)
T TIGR00249 88 VSDYLEALTNEGVASVLLV---SHLPLVGYLVAELCP 121 (152)
T ss_pred HHHHHHHHHhcCCCEEEEE---eCCCCHHHHHHHHhC
Confidence 4444554433356789889 999999776664444
No 35
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.93 E-value=1.2e+02 Score=31.84 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=33.0
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
.+-.+| +.+.+.+...... ++++|+++-+..|.=++.+-|.+ +||+|+.+.
T Consensus 255 ~i~~e~-~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e-lGm~vv~~~ 306 (396)
T cd01979 255 VLAERE-ARAWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR-CGMIVVEVG 306 (396)
T ss_pred HHHHHH-HHHHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH-CCCEEEeeC
Confidence 344444 3444555554442 45888754455567899999996 999998764
No 36
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=24.53 E-value=1.1e+02 Score=29.32 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=27.0
Q ss_pred CCEEEEEecCCChHHHHHHHHHhcCCcccccee
Q 012527 352 HNRIAILYGGGHMPDLGRRLREEFDLLPSRVQW 384 (461)
Q Consensus 352 ~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W 384 (461)
..+|+||.|+|...+..|....++|+.-...-|
T Consensus 24 ~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~ 56 (203)
T cd04240 24 GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHW 56 (203)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHH
Confidence 467889999999999999999888886555544
No 37
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=24.50 E-value=90 Score=33.17 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=33.9
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
.++.+|.+++ +.+.+.... +++|++|+-++.|.-++.+-|. |+|++|..+.
T Consensus 279 ~i~~~~~~~~-~~~~d~~~~l~gkrv~v~g~~~~~~~l~~~L~-elG~~~~~v~ 330 (429)
T cd03466 279 KYTRERGRLL-DAMIDAHKYNFGRKAAIYGEPDFVVAITRFVL-ENGMVPVLIA 330 (429)
T ss_pred HHHHHHHHHH-HHHHHHHHhcCCCEEEEEcCHHHHHHHHHHHH-HCCCEEEEEE
Confidence 4667776543 333333332 5688876666678889999998 7899985433
No 38
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=24.34 E-value=1.2e+02 Score=32.16 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=33.7
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
+..||.+. .+.+...... .+|+++++-++.|.=++.+-|.| +|++|..+.
T Consensus 254 ~~~e~~~~-~~~l~~~~~~l~Gkrv~i~gd~~~~~~l~~~L~e-lGm~~v~~~ 304 (407)
T TIGR01279 254 LSEREAQA-WRALEPHTQLLRGKKIFFFGDNLLELPLARFLKR-CGMEVVECG 304 (407)
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHH-CCCEEEEec
Confidence 55666544 3444444332 46888766566788999999995 999986554
No 39
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.19 E-value=1.2e+02 Score=32.12 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=34.7
Q ss_pred ccchhhhhHH--HHHHHHHHHH-hC-CCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 330 SVIIGERNRA--AIEALRRAID-EG-HNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 330 ~VLI~ERNr~--aae~Lr~a~~-~g-~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
+.|-.||.++ .+++++..+. .+ .++++|+=|+-|.-++.+-|.+|+|++|.-+.
T Consensus 267 ~~i~~e~~~~~~~l~~~~d~l~~~~~~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~ 324 (427)
T cd01971 267 AFIKAEEKRYYHYLERFSDFMARWGLPRRFAVIADSTYALGLARFLVNELGWVPAKQV 324 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEECChHHHHHHHHHHHHhcCCceEEEE
Confidence 3444455432 2333444443 23 58887555566999999999889999987653
No 40
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=22.96 E-value=1.1e+02 Score=32.85 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=39.3
Q ss_pred chhhhhHHHHHHHHHHHHhCCCEEEEEecCCChH--HHHHHHHHhcCCccccceeEEEEeecc
Q 012527 332 IIGERNRAAIEALRRAIDEGHNRIAILYGGGHMP--DLGRRLREEFDLLPSRVQWITAWSIRN 392 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~g~k~IaVvYGAGHlP--Gl~r~L~ee~g~vp~~~~W~tAw~i~~ 392 (461)
||--++++ +.|++++++- .||+++||||-.+ |+-.++.+.+. +.+|+.-=-+.|
T Consensus 12 i~FGkg~i--~~l~~ei~~~-~kVLi~YGGGSIKrnGvydqV~~~Lk----g~~~~E~~GVEP 67 (384)
T COG1979 12 ILFGKGQI--AELREEIPKD-AKVLIVYGGGSIKKNGVYDQVVEALK----GIEVIEFGGVEP 67 (384)
T ss_pred EEecCchH--HHHHhhcccc-CeEEEEecCccccccchHHHHHHHhc----CceEEEecCCCC
Confidence 44555554 6788888764 8899999999876 77788887776 777776544553
No 41
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.53 E-value=1.4e+02 Score=32.36 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=31.9
Q ss_pred hhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCcccccee
Q 012527 333 IGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQW 384 (461)
Q Consensus 333 I~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W 384 (461)
|.+.-+.+.+.+.+.... ++++++|.-|+.+.=++.+-|+ |+||+|..+..
T Consensus 304 i~~e~~~~~~~l~~~~~~l~Gk~vaI~~~~~~~~~la~~l~-ElGm~v~~~~~ 355 (475)
T PRK14478 304 IAEEEAKAWAALEPYRPRLEGKRVLLYTGGVKSWSVVKALQ-ELGMEVVGTSV 355 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHH-HCCCEEEEEEE
Confidence 333334445555555442 4588865444446668999887 89999876643
No 42
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=21.97 E-value=79 Score=34.69 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCEEEEEecCCChHHHHHHHHHhcCCccc
Q 012527 352 HNRIAILYGGGHMPDLGRRLREEFDLLPS 380 (461)
Q Consensus 352 ~k~IaVvYGAGHlPGl~r~L~ee~g~vp~ 380 (461)
++|++|+-++.|.-|+.+-|.+|+||.|.
T Consensus 305 Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv 333 (513)
T CHL00076 305 GKKAVVFGDATHAASMTKILAREMGIRVS 333 (513)
T ss_pred CCEEEEEcCchHHHHHHHHHHHhCCCEEE
Confidence 48897666778999999999999999986
No 43
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.86 E-value=1.8e+02 Score=30.85 Aligned_cols=54 Identities=17% Similarity=0.028 Sum_probs=35.1
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcC-CccccceeE
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFD-LLPSRVQWI 385 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g-~vp~~~~W~ 385 (461)
.+|=.||- .+.+.|.+.... .+++++|.-|+.|..++.+.|. |+| ++|..+...
T Consensus 271 ~~i~~e~~-~~~~~l~~~~~~l~Gk~~~i~~~~~~~~~~~~~l~-elG~~~v~~~~~~ 326 (426)
T cd01972 271 AVIEREHE-RVAPEIEELRKALKGKKAIVETGAAYGHLLIAVLR-ELGFGEVPVVLVF 326 (426)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhCCCEEEEEeCCccHHHHHHHHH-HcCCceEEEEEec
Confidence 34434443 333334433221 4588888889999999999998 689 887766553
No 44
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=21.64 E-value=1.4e+02 Score=32.23 Aligned_cols=58 Identities=31% Similarity=0.510 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHhcCCcc---------ccceeEEEEeecc--cc--ccccchhhHHHHHHHh----CCCcchhhHHH
Q 012527 362 GHMPDLGRRLREEFDLLP---------SRVQWITAWSIRN--RD--LSSSSFPFLKTMAEVL----GWPLNRYQTLA 421 (461)
Q Consensus 362 GHlPGl~r~L~ee~g~vp---------~~~~W~tAw~i~~--~~--~~~~~~~~~~~~~~~~----~w~~~~~~~~~ 421 (461)
..+|-+..+|+ +.|-.. ...+|-.||++.+ ++ ..+.-.|..+.|.++. +|||+ .|+-+
T Consensus 254 sslk~l~~kL~-e~gv~kv~itel~qGkTkRW~LaWSF~~~v~~~~~ps~~rps~~sl~~vf~~Lq~~pl~-~e~~~ 328 (419)
T KOG2912|consen 254 SSLKPLISKLR-EQGVTKVKITELVQGKTKRWGLAWSFMPIVRKIIAPSVVRPSVKSLLEVFYLLQNWPLD-PELCA 328 (419)
T ss_pred cccHHHHHHHH-HcCCceEEEEEeeccccceeeEEeeecccccccCCchhcccchhhHHHHHHHHhcCCCC-hHHHH
Confidence 35788888888 447322 3568999999965 22 3333455666677766 89985 44443
No 45
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.09 E-value=1.8e+02 Score=31.20 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=31.7
Q ss_pred chhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 332 IIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
|=.|| +.+.+.|.+.... +++++++.-|+.+.-++.+-|. |+||++..+.
T Consensus 306 i~~e~-~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~-elGmevv~~~ 356 (456)
T TIGR01283 306 IAREE-AKIRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQ-DLGMEVVATG 356 (456)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHH-HCCCEEEEEe
Confidence 43444 3344444444332 4588875555668888999887 7999987653
No 46
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.03 E-value=1.3e+02 Score=31.94 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=35.5
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
.|-.||.+ +.+.+.+.... +.++++|+=++.|.=++.+-|. |+||+|..+.
T Consensus 282 ~i~~er~~-~~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~-elGm~v~~~~ 333 (435)
T cd01974 282 ELEEERGR-LVDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLL-ELGMEPVHVL 333 (435)
T ss_pred HHHHHHHH-HHHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHH-HCCCEEEEEE
Confidence 35556654 45556554443 4588976667779999999999 7999995533
No 47
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=20.92 E-value=1.1e+02 Score=32.91 Aligned_cols=52 Identities=19% Similarity=0.072 Sum_probs=36.4
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCcccccee
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQW 384 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W 384 (461)
.+..||.+ +.+.+.+.... +.++++|..|+.|.-++.+-|. |+||+|..+-.
T Consensus 290 ~i~~er~~-~~~~~~d~~~~l~gkrvai~~~~~~~~~la~~L~-elG~~v~~~~~ 342 (455)
T PRK14476 290 KYRRQRAQ-LQDAMLDGHFYFGGKRVAIAAEPDLLLALGSFLA-EMGAEIVAAVT 342 (455)
T ss_pred HHHHHHHH-HHHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHH-HCCCEEEEEEe
Confidence 35455644 44555444332 4689988877889999999999 79999877544
No 48
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=20.76 E-value=1.2e+02 Score=27.87 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=15.9
Q ss_pred hCCCEEEEEecCCChHHHHHHHHH
Q 012527 350 EGHNRIAILYGGGHMPDLGRRLRE 373 (461)
Q Consensus 350 ~g~k~IaVvYGAGHlPGl~r~L~e 373 (461)
.+.+.|.+| ||.|+|..-...
T Consensus 98 ~~~~~vllV---gH~P~l~~l~~~ 118 (159)
T PRK10848 98 EGVASVLVI---SHLPLVGYLVAE 118 (159)
T ss_pred cCCCeEEEE---eCcCcHHHHHHH
Confidence 345789999 999999766543
No 49
>KOG4606 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=1.3e+02 Score=27.63 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHhcCCc-cccceeEEE
Q 012527 363 HMPDLGRRLREEFDLL-PSRVQWITA 387 (461)
Q Consensus 363 HlPGl~r~L~ee~g~v-p~~~~W~tA 387 (461)
.++.++|||+|--.|- |+..+||-+
T Consensus 9 DLKaFErRLTEvi~~~~Pst~RWRi~ 34 (126)
T KOG4606|consen 9 DLKAFERRLTEVITYMGPSTGRWRIA 34 (126)
T ss_pred HHHHHHHHHHHHhhhcCCCccchhhH
Confidence 4677888998766554 888888743
Done!