Query 012527
Match_columns 461
No_of_seqs 102 out of 106
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 11:10:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qvl_A Putative hydantoin race 77.5 2.3 8E-05 40.3 4.8 37 338-376 160-197 (245)
2 2xdq_A Light-independent proto 42.6 28 0.00097 35.2 5.4 50 331-382 296-346 (460)
3 1mio_B Nitrogenase molybdenum 37.8 19 0.00065 36.8 3.3 51 330-382 290-341 (458)
4 3aek_A Light-independent proto 37.7 25 0.00086 35.7 4.2 52 330-382 285-337 (437)
5 2eq5_A 228AA long hypothetical 36.2 30 0.001 31.2 4.0 38 338-377 161-200 (228)
6 2dwu_A Glutamate racemase; iso 35.9 40 0.0014 32.1 5.0 36 339-376 168-203 (276)
7 1zuw_A Glutamate racemase 1; ( 32.3 50 0.0017 31.4 5.1 36 339-376 165-200 (272)
8 3jx9_A Putative phosphoheptose 30.6 30 0.001 31.4 3.1 31 340-372 27-57 (170)
9 2gzm_A Glutamate racemase; enz 30.4 61 0.0021 30.6 5.2 36 339-376 164-199 (267)
10 3npg_A Uncharacterized DUF364 30.0 30 0.001 33.1 3.1 29 340-374 107-135 (249)
11 1r1p_A GRB2-related adaptor pr 28.2 36 0.0012 27.4 2.8 33 201-233 3-35 (100)
12 4az3_B Lysosomal protective pr 26.6 22 0.00076 31.0 1.4 13 353-365 121-133 (155)
13 3u7q_A Nitrogenase molybdenum- 26.1 53 0.0018 34.1 4.3 51 331-383 327-378 (492)
14 2g5g_X Putative lipoprotein; c 25.8 35 0.0012 33.1 2.7 34 336-373 200-236 (268)
15 2vvt_A Glutamate racemase; iso 25.6 45 0.0015 32.0 3.4 25 350-376 196-220 (290)
16 3pdi_A Nitrogenase MOFE cofact 25.5 79 0.0027 32.7 5.5 51 330-382 310-361 (483)
17 1qgu_B Protein (nitrogenase mo 24.8 52 0.0018 34.4 4.0 50 330-381 338-388 (519)
18 3h1q_A Ethanolamine utilizatio 23.6 58 0.002 29.6 3.7 48 332-379 205-254 (272)
19 4b4k_A N5-carboxyaminoimidazol 22.5 47 0.0016 31.0 2.8 43 330-372 55-99 (181)
20 1mio_A Nitrogenase molybdenum 22.2 91 0.0031 32.8 5.2 55 330-386 313-368 (533)
21 3pdi_B Nitrogenase MOFE cofact 22.2 56 0.0019 33.6 3.5 51 330-382 291-342 (458)
22 2ych_A Competence protein PILM 21.8 88 0.003 30.0 4.7 47 332-378 279-333 (377)
23 2jfq_A Glutamate racemase; cel 21.6 59 0.002 31.2 3.4 25 350-376 195-219 (286)
24 1whs_B Serine carboxypeptidase 21.6 32 0.0011 30.1 1.4 13 353-365 117-129 (153)
25 2jfn_A Glutamate racemase; cel 20.3 99 0.0034 29.5 4.7 37 338-376 181-219 (285)
26 2aug_A Growth factor receptor- 20.1 61 0.0021 27.5 2.8 35 193-227 12-46 (126)
No 1
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=77.51 E-value=2.3 Score=40.32 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 338 RAAIEALRRAID-EGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 338 r~aae~Lr~a~~-~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
+.+.+.+++.++ +|.+.| |.|+.|||++.+.|++.+|
T Consensus 160 ~~l~~~~~~~~~~~gad~I--VLGCTh~p~l~~~i~~~~g 197 (245)
T 3qvl_A 160 EKVRERCIRALKEDGSGAI--VLGSGGMATLAQQLTRELR 197 (245)
T ss_dssp HHHHHHHHHHHHHSCCSEE--EECCGGGGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCEE--EECCCChHHHHHHHHHHcC
Confidence 344444555554 466766 7899999999999999887
No 2
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=42.61 E-value=28 Score=35.21 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=36.3
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
.|+.||.++. +.+...... ++|+++|+-|+.|.=++.+-|+ |+||+|..+
T Consensus 296 ~i~~e~~~~~-~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~-elGm~vv~~ 346 (460)
T 2xdq_A 296 GLAEREAETW-QKLSDYLELVRGKSVFFMGDNLLEISLARFLI-RCGMRVLEI 346 (460)
T ss_dssp SCHHHHHHHH-HTTHHHHHHHTTCEEEECCCSSCHHHHHHHHH-HTTCEEEEE
T ss_pred HHHHHHHHHH-HHHHHHHHHhcCCEEEEECCchHHHHHHHHHH-HCCCEEEEe
Confidence 5777776554 445443332 5689987766889999999998 799998864
No 3
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=37.76 E-value=19 Score=36.80 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=37.2
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+.|..||.++. +.+...... ++++++|..|+.|.-++.+-|+ |+|++|..+
T Consensus 290 ~~i~~e~~~~~-~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~-elG~~vv~v 341 (458)
T 1mio_B 290 ASIEEERGQLI-DLMIDAQQYLQGKKVALLGDPDEIIALSKFII-ELGAIPKYV 341 (458)
T ss_dssp HHHHHHHHHHH-HHHHHTHHHHTTCEEEEEECHHHHHHHHHHHH-TTTCEEEEE
T ss_pred HHHHHHHHHHH-HHHHHHHHHcCCCEEEEEcCchHHHHHHHHHH-HCCCEEEEE
Confidence 46777887753 444333221 5689988888899999999998 899998763
No 4
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=37.75 E-value=25 Score=35.71 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=34.9
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
++|=.||.++ .+.+...... +.++++|+.|+.|.-++.+-|..|+||+|..+
T Consensus 285 ~~i~~e~~~~-~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~~elG~~vv~~ 337 (437)
T 3aek_A 285 AVTAAPRARA-KKAIAAHLETLTGKSLFMFPDSQLEIPLARFLARECGMKTTEI 337 (437)
T ss_dssp HHHHHHHHHH-HHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHH-HHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHHHHcCCEEEEE
Confidence 3344445443 3333322221 45899888888999999999966999998765
No 5
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=36.22 E-value=30 Score=31.24 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCChH--HHHHHHHHhcCC
Q 012527 338 RAAIEALRRAIDEGHNRIAILYGGGHMP--DLGRRLREEFDL 377 (461)
Q Consensus 338 r~aae~Lr~a~~~g~k~IaVvYGAGHlP--Gl~r~L~ee~g~ 377 (461)
+.+.+.+++..++|.+.| |.|+.||| .+.+.+++.+|.
T Consensus 161 ~~l~~~~~~l~~~~~d~I--vLgCT~~~t~~~~~~i~~~~~v 200 (228)
T 2eq5_A 161 REVINAAKRLKEKGVEVI--ALGCTGMSTIGIAPVLEEEVGI 200 (228)
T ss_dssp HHHHHHHHHHHHTTCSEE--EECCTHHHHHTCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCCEE--EECCCCcchHHHHHHHHHHcCC
Confidence 344455555555566766 77999999 999999988753
No 6
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=35.89 E-value=40 Score=32.05 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 339 AAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 339 ~aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
.+.+.+++..++|.+.| |.|+.|+|.+...+++.+|
T Consensus 168 ~l~~~l~~l~~~~~D~I--VLGCTh~p~l~~~i~~~~~ 203 (276)
T 2dwu_A 168 QVKQALLPLTKEDIDTL--ILGCTHYPLLESYIKKELG 203 (276)
T ss_dssp HHHHHHHHHHTSCCSEE--EECSTTGGGGHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEE--EECCCCHHHHHHHHHHHcC
Confidence 44455555444566766 8899999999999998774
No 7
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=32.32 E-value=50 Score=31.35 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 339 AAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 339 ~aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
.+.+.+++..++|.+.| |.|+-|+|.+...+++.+|
T Consensus 165 ~l~~~l~~l~~~~~D~i--VLGCTh~pll~~~i~~~~~ 200 (272)
T 1zuw_A 165 IVKTSLYPLKDTSIDSL--ILGCTHYPILKEAIQRYMG 200 (272)
T ss_dssp HHHHHHHHHHHSCCSEE--EEESTTGGGGHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEE--EECccCHHHHHHHHHHHcC
Confidence 34444555444566766 7899999999999998774
No 8
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=30.65 E-value=30 Score=31.41 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCChHHHHHHHH
Q 012527 340 AIEALRRAIDEGHNRIAILYGGGHMPDLGRRLR 372 (461)
Q Consensus 340 aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ 372 (461)
+++.|.+++.. ..+|. ++|+||+-.++..+.
T Consensus 27 AA~llaqai~~-~g~Iy-vfG~Ghs~~~~~e~~ 57 (170)
T 3jx9_A 27 VVRLLAQALVG-QGKVY-LDAYGEFEGLYPMLS 57 (170)
T ss_dssp HHHHHHHHHHT-TCCEE-EEECGGGGGGTHHHH
T ss_pred HHHHHHHHHhC-CCEEE-EECCCcHHHHHHHHH
Confidence 44455555544 46675 899999999988776
No 9
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=30.38 E-value=61 Score=30.58 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 339 AAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 339 ~aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
.+.+.+++..++|.+.| |.|+-|+|.+...+++.+|
T Consensus 164 ~l~~~~~~l~~~~~d~i--VLGCTh~p~l~~~i~~~~~ 199 (267)
T 2gzm_A 164 VVRETLQPLKNTDIDTL--ILGCTHYPILGPVIKQVMG 199 (267)
T ss_dssp HHHHHHHHHHHSCCSEE--EECSTTGGGGHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEE--EEcccChHHHHHHHHHHcC
Confidence 34444554444566766 7899999999999998774
No 10
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=30.02 E-value=30 Score=33.09 Aligned_cols=29 Identities=38% Similarity=0.678 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHh
Q 012527 340 AIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREE 374 (461)
Q Consensus 340 aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee 374 (461)
+++.++ ..+.++|++| ||+|.+.++|.+.
T Consensus 107 ~~~~~~---~~~~~kV~vI---G~~p~l~~~l~~~ 135 (249)
T 3npg_A 107 VTELIQ---QDEIKRIAII---GNMPPVVRTLKEK 135 (249)
T ss_dssp HHHHHH---TSCCSEEEEE---SCCHHHHHHHTTT
T ss_pred HHHHHh---hcCCCEEEEE---CCCHHHHHHHhcc
Confidence 444454 3456899999 9999999999965
No 11
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=28.21 E-value=36 Score=27.44 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=23.6
Q ss_pred ccccccccccccCCCHHHHHHHHHhcCCCcchh
Q 012527 201 CLDYQAENWYHADLDYETFKLLQLEKGESLFTF 233 (461)
Q Consensus 201 ~iDY~~~nw~hADl~geEm~~l~~e~G~~l~~~ 233 (461)
+|+.....|||..++++|-.++........+++
T Consensus 3 yi~l~~~~Wyhg~isR~~Ae~lL~~~~~G~FLV 35 (100)
T 1r1p_A 3 FIDIEFPEWFHEGLSRHQAENLLMGKDIGFFII 35 (100)
T ss_dssp ---CTTTTTSCTTCCHHHHHHHHHTSCTTBEEE
T ss_pred ccEeccCCccccCCCHHHHHHHhcCCCCCEEEE
Confidence 567778899999999999999886654444444
No 12
>4az3_B Lysosomal protective protein 20 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_B*
Probab=26.61 E-value=22 Score=30.97 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=10.4
Q ss_pred CEEEEEecCCChH
Q 012527 353 NRIAILYGGGHMP 365 (461)
Q Consensus 353 k~IaVvYGAGHlP 365 (461)
=..+.|+|||||-
T Consensus 121 Ltf~~V~~AGHmV 133 (155)
T 4az3_B 121 IAFLTIKGAGHMV 133 (155)
T ss_dssp EEEEEETTCCSCH
T ss_pred EEEEEECCCcCcC
Confidence 3567899999984
No 13
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=26.12 E-value=53 Score=34.14 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=32.3
Q ss_pred cchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 331 VIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 331 VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
+|=.||.+ +.+.|...... ++|||+|.-|+.|.=++.+-|+ |+||+|..+.
T Consensus 327 ~i~~e~~~-~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~-ElGm~vv~~g 378 (492)
T 3u7q_A 327 VIAKYKPE-WEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYE-DLGMEVVGTG 378 (492)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHH-TTTCEEEEEE
T ss_pred HHHHHHHH-HHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHH-HCCCEEEEEe
Confidence 34344443 33445444332 4589976556668888888885 8999987643
No 14
>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} SCOP: c.150.1.1
Probab=25.77 E-value=35 Score=33.10 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHhCCCEEEEEecCCChH---HHHHHHHH
Q 012527 336 RNRAAIEALRRAIDEGHNRIAILYGGGHMP---DLGRRLRE 373 (461)
Q Consensus 336 RNr~aae~Lr~a~~~g~k~IaVvYGAGHlP---Gl~r~L~e 373 (461)
||+.|++.|.+. + +.|.++-|+||.. ||-.+|..
T Consensus 200 rD~~MA~~i~~~---~-~~vv~iaG~gH~~~~~Gvp~~l~~ 236 (268)
T 2g5g_X 200 KDRRMADVLVHH---V-NKVLLLAGSYHTSKKIGIPLHIQD 236 (268)
T ss_dssp HHHHHHHHHHHC---S-SEEEEEEEHHHHCTTTSHHHHHHH
T ss_pred HHHHHHHHHHhC---C-CeEEEEeCcchhcCCCcHHHHHHH
Confidence 999999998652 3 5677899999999 99999983
No 15
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=25.60 E-value=45 Score=32.04 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=20.5
Q ss_pred hCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 350 EGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 350 ~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
+|.+.| |.|+.|+|.+...+++.+|
T Consensus 196 ~g~D~I--VLGCTh~p~l~~~i~~~l~ 220 (290)
T 2vvt_A 196 KGLDTL--ILGCTHYPLLRPVIQNVMG 220 (290)
T ss_dssp SCCSEE--EECSTTGGGGHHHHHHHHC
T ss_pred CCCCEE--EECCcCHHHHHHHHHHHcC
Confidence 355655 8899999999999998774
No 16
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.48 E-value=79 Score=32.68 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=32.7
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
.+|-.||.++ .+.|...... ++|||+|+-|+.|.=++.+-|+ |+||+|+.+
T Consensus 310 ~~i~~er~~~-~~al~~~~~~l~GKrv~i~~~~~~~~~l~~~L~-ElGmevv~~ 361 (483)
T 3pdi_A 310 ALIAREEAKV-RAALEPWRARLEGKRVLLYTGGVKSWSVVSALQ-DLGMKVVAT 361 (483)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHH-HHTCEEEEE
T ss_pred HHHHHHHHHH-HHHHHHHHHHhcCCEEEEECCCchHHHHHHHHH-HCCCEEEEE
Confidence 3454555444 3444444332 4689976556667778999886 899998754
No 17
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=24.78 E-value=52 Score=34.39 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=35.1
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCcccc
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSR 381 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~ 381 (461)
..|..||.++ .+.+...... ++++|+|.-+..|.-+|.+-|. |+||+|..
T Consensus 338 ~~i~~er~~~-~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~~L~-ElGm~vv~ 388 (519)
T 1qgu_B 338 DALTLERGRL-VDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLL-ELGCEPTV 388 (519)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHHH-HHHHHHHHHHcCCCEEEEECCchHHHHHHHHHH-HCCCEEEE
Confidence 3466677544 4555443332 5689987766778899999998 89999864
No 18
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=23.61 E-value=58 Score=29.62 Aligned_cols=48 Identities=4% Similarity=0.048 Sum_probs=34.7
Q ss_pred chhhhhHHHHHHHHHHHHh-C-CCEEEEEecCCChHHHHHHHHHhcCCcc
Q 012527 332 IIGERNRAAIEALRRAIDE-G-HNRIAILYGGGHMPDLGRRLREEFDLLP 379 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~-g-~k~IaVvYGAGHlPGl~r~L~ee~g~vp 379 (461)
++..+-+.+++.+++.+++ + .+.|.++=|++.+||+.++|+++||..+
T Consensus 205 ~~~~~~~~i~~~i~~~l~~~~~~~~ivL~GG~a~~~~l~~~l~~~l~~~v 254 (272)
T 3h1q_A 205 VVRPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFLGKEV 254 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCSSCCEEEESGGGGSTTHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCccchhhHHHHHHHHhCCCc
Confidence 4455556667777777764 3 4567556667789999999999998743
No 19
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=22.53 E-value=47 Score=31.02 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=25.5
Q ss_pred ccchhhhh-HHHHHHHHHHHHhCCCEE-EEEecCCChHHHHHHHH
Q 012527 330 SVIIGERN-RAAIEALRRAIDEGHNRI-AILYGGGHMPDLGRRLR 372 (461)
Q Consensus 330 ~VLI~ERN-r~aae~Lr~a~~~g~k~I-aVvYGAGHlPGl~r~L~ 372 (461)
.|+=.-|. +.+.+.++++.++|.+.| ++==|++|+||+...++
T Consensus 55 ~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 55 KVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp EECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred EEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 44444454 334444544444565554 33336899999999877
No 20
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.23 E-value=91 Score=32.82 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=35.4
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccceeEE
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWIT 386 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~W~t 386 (461)
++|=.||.++ .+.|...... .+|+++++-|+.|.-++.+-|+ |+||+|..+...+
T Consensus 313 ~~i~~e~~~~-~~~l~~~~~~l~GKrv~i~~~~~~~~~l~~~l~-ElGm~vv~~~t~~ 368 (533)
T 1mio_A 313 EVIAEEIAAI-QDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLK-SFGVDSLVAGFEF 368 (533)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHH-HHTCEEEEEEESS
T ss_pred HHHHHHHHHH-HHHHHHHHHHhCCCEEEEECCchHHHHHHHHHH-HCCCEEEEEEecc
Confidence 3454455443 3344333322 4589987777889999998775 8999988765433
No 21
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=22.22 E-value=56 Score=33.58 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=32.5
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+.|-.||.+.. +.+.+.... ++||++|+-|+.|.=++.+-| .|+||+|+.+
T Consensus 291 ~~i~~er~r~~-~~~~d~~~~l~Gkrv~i~~~~~~~~~l~~~L-~elGm~vv~~ 342 (458)
T 3pdi_B 291 DRYKRQRAQLQ-DAMLDTHFMLSSARTAIAADPDLLLGFDALL-RSMGAHTVAA 342 (458)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHTTCEEEEECCHHHHHHHHHHH-HTTTCEEEEE
T ss_pred HHHHHHHHHHH-HHHHHHHHhcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEE
Confidence 44656666543 444333322 568997544444777999999 4899998754
No 22
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=21.84 E-value=88 Score=29.97 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=33.7
Q ss_pred chhhhhHHHHHHHHHHHHh--------CCCEEEEEecCCChHHHHHHHHHhcCCc
Q 012527 332 IIGERNRAAIEALRRAIDE--------GHNRIAILYGGGHMPDLGRRLREEFDLL 378 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~--------g~k~IaVvYGAGHlPGl~r~L~ee~g~v 378 (461)
+|..+-+.+++.+++.++. ..+.|.++=|+..+||+.+.|.+.||..
T Consensus 279 ~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~ 333 (377)
T 2ych_A 279 AIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVN 333 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCC
Confidence 4466666677777777652 2477854545557999999999999963
No 23
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=21.62 E-value=59 Score=31.18 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=20.4
Q ss_pred hCCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 350 EGHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 350 ~g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
+|.+.| |.|+.|+|.+...+++.+|
T Consensus 195 ~g~D~I--VLGCTh~p~l~~~i~~~l~ 219 (286)
T 2jfq_A 195 SESDTV--ILGCTHYPLLYKPIYDYFG 219 (286)
T ss_dssp CSCSEE--EEESSSGGGGHHHHHHHTT
T ss_pred CCCCEE--EEcCcCHHHHHHHHHHHcC
Confidence 355665 7899999999999998874
No 24
>1whs_B Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1wht_B* 1bcs_B* 1bcr_B* 3sc2_B*
Probab=21.57 E-value=32 Score=30.06 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=10.4
Q ss_pred CEEEEEecCCChH
Q 012527 353 NRIAILYGGGHMP 365 (461)
Q Consensus 353 k~IaVvYGAGHlP 365 (461)
=..+.|+|||||-
T Consensus 117 Ltf~~V~~AGHmV 129 (153)
T 1whs_B 117 LTLVSVRGAGHEV 129 (153)
T ss_dssp EEEEEETTCCSSH
T ss_pred EEEEEECCCcccC
Confidence 3566899999994
No 25
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=20.35 E-value=99 Score=29.51 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHh--CCCEEEEEecCCChHHHHHHHHHhcC
Q 012527 338 RAAIEALRRAIDE--GHNRIAILYGGGHMPDLGRRLREEFD 376 (461)
Q Consensus 338 r~aae~Lr~a~~~--g~k~IaVvYGAGHlPGl~r~L~ee~g 376 (461)
+.+.+.+++...+ |.+.| |.|+-|+|-+...+++.+|
T Consensus 181 ~~l~~~l~~l~~~~~~~D~I--VLGCTh~p~l~~~i~~~lg 219 (285)
T 2jfn_A 181 DALKRILRPWLRMKEPPDTV--VLGCTHFPLLQEELLQVLP 219 (285)
T ss_dssp HHHHHHTHHHHTCSSCCSEE--EECSTTGGGGHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCCCEE--EEeCCCcHHHHHHHHHhcC
Confidence 3455556565542 45665 7899999999999998776
No 26
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}
Probab=20.06 E-value=61 Score=27.46 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=21.8
Q ss_pred cCccccccccccccccccccCCCHHHHHHHHHhcC
Q 012527 193 LMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKG 227 (461)
Q Consensus 193 lGL~pQLD~iDY~~~nw~hADl~geEm~~l~~e~G 227 (461)
.||++....-+.....|||.+++++|-.++....|
T Consensus 12 ~~~~~~~~~~~l~~~~WyhG~isR~eAe~lL~~~g 46 (126)
T 2aug_A 12 SGLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQG 46 (126)
T ss_dssp ----------CGGGSTTEETTCCHHHHHHHHHTTT
T ss_pred CcccccCCccccccCCcccCCCCHHHHHHHHhccC
Confidence 46777666667788899999999999999887654
Done!