Query 012527
Match_columns 461
No_of_seqs 102 out of 106
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 11:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012527.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012527hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ebfx2 c.150.1.2 (X:875-1093) 67.7 0.8 5.9E-05 41.5 1.3 37 335-372 144-190 (219)
2 d1r1qa_ d.93.1.1 (A:) GRB2-rel 34.2 12 0.00089 28.4 2.9 32 202-233 1-32 (97)
3 d1p3da2 c.59.1.1 (A:322-473) U 29.3 26 0.0019 26.9 4.3 41 332-375 112-152 (152)
4 d1m1na_ c.92.2.3 (A:) Nitrogen 29.0 21 0.0015 34.5 4.3 32 351-383 344-375 (477)
5 d1mioa_ c.92.2.3 (A:) Nitrogen 25.5 33 0.0024 33.7 5.1 52 330-383 313-365 (525)
6 d1xmpa_ c.23.8.1 (A:) N5-CAIR 23.4 22 0.0016 30.2 2.8 43 330-372 34-78 (155)
7 d1qh8b_ c.92.2.3 (B:) Nitrogen 19.4 57 0.0041 31.7 5.4 51 330-382 338-389 (519)
8 d2g5gx1 c.150.1.1 (X:9-263) He 17.9 21 0.0015 31.8 1.6 34 336-373 189-225 (255)
9 d1gs5a_ c.73.1.2 (A:) N-acetyl 17.1 70 0.0051 26.1 4.8 40 338-380 21-60 (258)
10 d1fu6a_ d.93.1.1 (A:) Phosphat 15.5 22 0.0016 27.1 0.9 33 201-233 5-37 (111)
No 1
>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=67.69 E-value=0.8 Score=41.50 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHhCCCEEEEEecCCC----------hHHHHHHHH
Q 012527 335 ERNRAAIEALRRAIDEGHNRIAILYGGGH----------MPDLGRRLR 372 (461)
Q Consensus 335 ERNr~aae~Lr~a~~~g~k~IaVvYGAGH----------lPGl~r~L~ 372 (461)
-|+-+++++|++...+|.|=| ++||-+| ||||..+|.
T Consensus 144 yr~nia~e~l~~L~~~geKfV-a~~gsahl~S~~Gi~~~vpGi~~~l~ 190 (219)
T d2ebfx2 144 YKGNIIAEAIEKLDREGQKFV-VFADSSLLNSTPGTGRPMPGLVQYLK 190 (219)
T ss_dssp HHHHHHHHHHHHTSCTTCCEE-EEECHHHHSCEEBSSSEECCHHHHHT
T ss_pred ehhhHHHHHHHhCCccCCeEE-EEechhhhhcCCCcCCCCcchHHhcC
Confidence 588888888877765776777 5999999 688887764
No 2
>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.16 E-value=12 Score=28.40 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=25.5
Q ss_pred cccccccccccCCCHHHHHHHHHhcCCCcchh
Q 012527 202 LDYQAENWYHADLDYETFKLLQLEKGESLFTF 233 (461)
Q Consensus 202 iDY~~~nw~hADl~geEm~~l~~e~G~~l~~~ 233 (461)
||+...-|||.+|+++|=.++....+...+++
T Consensus 1 ~d~~~~~Wy~g~isR~~Ae~lL~~~~~G~FLV 32 (97)
T d1r1qa_ 1 IDIEFPEWFHEGLSRHQAENLLMGKDIGFFII 32 (97)
T ss_dssp CCCSCCTTBCTTCCHHHHHHHHHTSCTTCEEE
T ss_pred CCcccCCccCCCCCHHHHHHHHhcCCCCCEEE
Confidence 68889999999999999888776555555554
No 3
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=29.31 E-value=26 Score=26.91 Aligned_cols=41 Identities=20% Similarity=0.460 Sum_probs=27.5
Q ss_pred chhhhhHHHHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhc
Q 012527 332 IIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEF 375 (461)
Q Consensus 332 LI~ERNr~aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~ 375 (461)
.+..|++. ++.+.+.+.+ ++.| ++-|||..-++.+.|.|.|
T Consensus 112 ~~~~~~~~-i~~~~~~~~~-gDii-l~mGaGdi~~i~~~l~e~~ 152 (152)
T d1p3da2 112 LVSDTSQL-GDVLDQIIQD-GDLI-LAQGAGSVSKISRGLAESW 152 (152)
T ss_dssp EESCGGGH-HHHHHHHCCT-TCEE-EEECSSTHHHHHHHHHHHC
T ss_pred ccCCHHHH-HHHHHHhCCC-CCEE-EEEcCCCHHHHHHHHHhcC
Confidence 44555553 3444444433 3666 6899999999999999765
No 4
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]}
Probab=28.95 E-value=21 Score=34.49 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=25.6
Q ss_pred CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 351 GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 351 g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
+++++++.-|+.|.-++.+-|+ |+||+|..+.
T Consensus 344 ~Gkrv~i~~~~~~~~~l~~~l~-elGmevv~~~ 375 (477)
T d1m1na_ 344 EGKRVMLYIGGLRPRHVIGAYE-DLGMEVVGTG 375 (477)
T ss_dssp TTCEEEECBSSSHHHHTHHHHH-TTTCEEEEEE
T ss_pred cCCcEEEecCchhHHHHHHHHH-HCCCEEEEEe
Confidence 4589987777788888899885 8999987653
No 5
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Clostridium pasteurianum [TaxId: 1501]}
Probab=25.47 E-value=33 Score=33.65 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=32.2
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccce
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQ 383 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~~ 383 (461)
++|=.|| +.+.+.|...... .+||+++.-|+.|.=++.+.|+ |+|++|..+.
T Consensus 313 e~I~~e~-~~~~~~l~~~~~~L~GKrv~i~~g~~~~~~~~~~l~-elGmevv~~g 365 (525)
T d1mioa_ 313 EVIAEEI-AAIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLK-SFGVDSLVAG 365 (525)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHH-HHTCEEEEEE
T ss_pred HHHHHHH-HHHHHHHHHHHHhhCCCceEEecCchHHHHHHHHHH-HcCCeEEEee
Confidence 3343334 3344444444332 4588976666667778888885 8999987543
No 6
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=23.44 E-value=22 Score=30.23 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=24.4
Q ss_pred ccchhhhh-HHHHHHHHHHHHhCCCEEEEEe-cCCChHHHHHHHH
Q 012527 330 SVIIGERN-RAAIEALRRAIDEGHNRIAILY-GGGHMPDLGRRLR 372 (461)
Q Consensus 330 ~VLI~ERN-r~aae~Lr~a~~~g~k~IaVvY-GAGHlPGl~r~L~ 372 (461)
.++-.-|. +.+.+.+++..+.+.+.|-+.- +++||||+...++
T Consensus 34 ~v~SAHrtp~rl~~~~~~~~~~~~~viIa~AG~aa~Lpgvva~~t 78 (155)
T d1xmpa_ 34 KVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 78 (155)
T ss_dssp EECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTC
T ss_pred EEechhcChHHHHHHHHHHHhhcceEEEeecccCCCchhHHHHhc
Confidence 34444453 2334444444344555543333 4799999999887
No 7
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]}
Probab=19.35 E-value=57 Score=31.74 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=34.4
Q ss_pred ccchhhhhHHHHHHHHHHHHh-CCCEEEEEecCCChHHHHHHHHHhcCCccccc
Q 012527 330 SVIIGERNRAAIEALRRAIDE-GHNRIAILYGGGHMPDLGRRLREEFDLLPSRV 382 (461)
Q Consensus 330 ~VLI~ERNr~aae~Lr~a~~~-g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~~~ 382 (461)
+.|..||.|.. +.+.+.... +.+|++|.=++.|.=|+.+-|. |+|++|..+
T Consensus 338 ~~i~~er~r~~-da~~d~~~~l~GkrvaI~gd~~~~~~la~fL~-ElG~e~~~v 389 (519)
T d1qh8b_ 338 DALTLERGRLV-DMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLL-ELGCEPTVI 389 (519)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHH-HTTCEEEEE
T ss_pred HHHHHHHHHHH-HHHHHHHHHcCCcEEEEECCcHHHHHHHHHHH-HcCCeeeEE
Confidence 44777886654 445444442 5689985545557779999997 799998643
No 8
>d2g5gx1 c.150.1.1 (X:9-263) Heme transport protein ChaN {Campylobacter jejuni [TaxId: 197]}
Probab=17.93 E-value=21 Score=31.82 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhCCCEEEEEecCCCh---HHHHHHHHH
Q 012527 336 RNRAAIEALRRAIDEGHNRIAILYGGGHM---PDLGRRLRE 373 (461)
Q Consensus 336 RNr~aae~Lr~a~~~g~k~IaVvYGAGHl---PGl~r~L~e 373 (461)
||+.|++.|.+. + +++.++-|.||. =||-.+|..
T Consensus 189 ~Da~MA~~i~~~---~-~~vvvIaG~gH~~~~~GiP~~L~~ 225 (255)
T d2g5gx1 189 KDRRMADVLVHH---V-NKVLLLAGSYHTSKKIGIPLHIQD 225 (255)
T ss_dssp HHHHHHHHHHHC---S-SEEEEEEEHHHHCTTTSHHHHHHH
T ss_pred HHHHHHHHHHhc---C-CeEEEEcCcchhcCCccHHHHHHh
Confidence 999999998542 3 556689999999 489999983
No 9
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}
Probab=17.09 E-value=70 Score=26.12 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCChHHHHHHHHHhcCCccc
Q 012527 338 RAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPS 380 (461)
Q Consensus 338 r~aae~Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g~vp~ 380 (461)
+.+++.|.+....|.+.|.||-|||+ -+.+.+. ++|..+.
T Consensus 21 ~~~~~~ia~l~~~g~~~vvvvhG~g~--~~~~~~~-~~g~~~~ 60 (258)
T d1gs5a_ 21 ERLFSALVNYRESHQRPLVIVHGGGC--VVDELMK-GLNLPVK 60 (258)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECCHH--HHHHHHH-HHTCCCC
T ss_pred HHHHHHHHHHHHCCCceEEEECCCch--hhhcchh-hhccccc
Confidence 34566676666678787778999984 4555555 7788764
No 10
>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.50 E-value=22 Score=27.10 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=25.2
Q ss_pred ccccccccccccCCCHHHHHHHHHhcCCCcchh
Q 012527 201 CLDYQAENWYHADLDYETFKLLQLEKGESLFTF 233 (461)
Q Consensus 201 ~iDY~~~nw~hADl~geEm~~l~~e~G~~l~~~ 233 (461)
.++.....|||-+|+++|-.+++...+...+++
T Consensus 5 ~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLV 37 (111)
T d1fu6a_ 5 NMSLQDAEWYWGDISREEVNEKLRDTADGTFLV 37 (111)
T ss_dssp CCCCSCCSSCCSSCCSHHHHHHSSSCSSCCCCC
T ss_pred CCccCcCcCCCCCCCHHHHHHHhCcCCCCEEEE
Confidence 466777889999999999988775555555555
Done!