Query 012528
Match_columns 461
No_of_seqs 243 out of 1584
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2067 Mitochondrial processi 100.0 1.1E-81 2.5E-86 585.4 31.5 382 75-460 21-410 (472)
2 KOG0960 Mitochondrial processi 100.0 1.1E-61 2.5E-66 451.2 33.4 375 77-459 32-413 (467)
3 COG0612 PqqL Predicted Zn-depe 100.0 1.7E-48 3.8E-53 397.8 37.2 368 78-458 16-394 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.8E-45 3.9E-50 384.0 42.0 330 81-429 2-347 (696)
5 PRK15101 protease3; Provisiona 100.0 8.3E-42 1.8E-46 380.5 39.1 363 73-451 38-420 (961)
6 PTZ00432 falcilysin; Provision 100.0 3.7E-34 8.1E-39 316.9 35.8 362 78-456 91-528 (1119)
7 KOG2583 Ubiquinol cytochrome c 100.0 1.3E-32 2.7E-37 258.2 34.7 345 78-435 22-367 (429)
8 PRK15101 protease3; Provisiona 100.0 3.5E-31 7.6E-36 295.3 33.2 377 53-458 499-888 (961)
9 COG1025 Ptr Secreted/periplasm 100.0 1.9E-30 4.2E-35 269.1 34.6 346 73-434 18-381 (937)
10 KOG0959 N-arginine dibasic con 100.0 7.8E-29 1.7E-33 261.6 35.0 361 75-451 24-404 (974)
11 PF00675 Peptidase_M16: Insuli 99.9 9.5E-23 2.1E-27 176.9 16.6 146 89-234 1-148 (149)
12 COG1026 Predicted Zn-dependent 99.9 1.7E-21 3.7E-26 203.6 27.4 354 84-455 27-412 (978)
13 PF05193 Peptidase_M16_C: Pept 99.9 2.6E-22 5.7E-27 179.5 17.3 175 240-428 1-184 (184)
14 COG1025 Ptr Secreted/periplasm 99.8 7.3E-18 1.6E-22 176.1 33.7 366 53-447 478-857 (937)
15 KOG2019 Metalloendoprotease HM 99.8 4.4E-17 9.6E-22 162.5 23.6 354 85-455 60-447 (998)
16 KOG0961 Predicted Zn2+-depende 99.8 1.6E-16 3.6E-21 158.3 23.6 334 87-440 29-392 (1022)
17 KOG0959 N-arginine dibasic con 99.7 7.9E-15 1.7E-19 156.1 33.7 337 85-448 516-873 (974)
18 COG1026 Predicted Zn-dependent 99.7 2.2E-15 4.8E-20 158.3 27.3 341 69-434 518-896 (978)
19 PTZ00432 falcilysin; Provision 99.6 1.4E-13 3E-18 153.7 29.5 325 83-434 664-1042(1119)
20 KOG2019 Metalloendoprotease HM 99.6 1.3E-13 2.8E-18 138.1 24.6 330 80-433 562-925 (998)
21 KOG0961 Predicted Zn2+-depende 99.0 3.9E-08 8.5E-13 99.3 18.2 323 93-434 556-920 (1022)
22 PF08367 M16C_assoc: Peptidase 98.5 3.9E-06 8.4E-11 78.9 14.2 134 67-202 59-205 (248)
23 PF03410 Peptidase_M44: Protei 98.3 3.1E-05 6.8E-10 75.8 16.0 184 82-289 2-196 (590)
24 PHA03081 putative metalloprote 98.1 0.0001 2.2E-09 72.4 15.5 183 82-288 2-195 (595)
25 PF00675 Peptidase_M16: Insuli 96.7 0.12 2.6E-06 44.2 15.8 133 304-456 6-140 (149)
26 KOG2067 Mitochondrial processi 95.7 0.19 4E-06 49.1 12.1 162 99-265 264-442 (472)
27 KOG0960 Mitochondrial processi 95.5 0.32 7E-06 47.5 13.1 177 87-267 258-450 (467)
28 TIGR02110 PQQ_syn_pqqF coenzym 95.0 0.25 5.4E-06 53.2 12.1 80 309-405 614-693 (696)
29 COG0612 PqqL Predicted Zn-depe 94.4 1.8 3.8E-05 44.4 16.2 129 138-267 290-432 (438)
30 PF05193 Peptidase_M16_C: Pept 88.1 4.3 9.4E-05 35.0 9.5 108 87-199 67-184 (184)
31 PF09851 SHOCT: Short C-termin 82.0 1.9 4.2E-05 26.0 2.9 26 404-429 5-30 (31)
32 PF08367 M16C_assoc: Peptidase 65.5 1.2E+02 0.0026 28.3 13.3 118 309-438 90-212 (248)
33 COG5023 Tubulin [Cytoskeleton] 40.2 1.2E+02 0.0026 30.0 7.3 97 346-446 139-250 (443)
34 PF01729 QRPTase_C: Quinolinat 30.4 52 0.0011 28.8 3.0 42 236-277 104-147 (169)
35 PF09186 DUF1949: Domain of un 28.6 1.8E+02 0.004 19.4 6.2 46 137-182 8-53 (56)
36 PF05120 GvpG: Gas vesicle pro 27.7 1.9E+02 0.0042 21.7 5.2 32 403-434 36-67 (79)
37 KOG1374 Gamma tubulin [Cytoske 24.5 61 0.0013 32.0 2.6 111 331-447 118-254 (448)
38 cd04922 ACT_AKi-HSDH-ThrA_2 AC 23.5 2.1E+02 0.0045 19.7 4.8 46 138-183 19-65 (66)
39 COG0157 NadC Nicotinate-nucleo 23.1 1.7E+02 0.0036 27.9 5.1 44 234-277 210-254 (280)
40 cd04916 ACT_AKiii-YclM-BS_2 AC 22.9 2.5E+02 0.0054 19.3 5.1 46 139-184 20-66 (66)
41 PF11180 DUF2968: Protein of u 20.6 3.2E+02 0.0068 24.4 6.0 75 360-435 41-124 (192)
No 1
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-81 Score=585.41 Aligned_cols=382 Identities=50% Similarity=0.758 Sum_probs=364.8
Q ss_pred CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEE
Q 012528 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (461)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (461)
++.+++.++|+||+||++++++++.++++++|++|+++|.+...|++|++|+|+|++|.+++..++.+.||.+||+++|+
T Consensus 21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq 100 (472)
T KOG2067|consen 21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ 100 (472)
T ss_pred ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 012528 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (461)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~ 233 (461)
++||++.|.+++.+++++.++++|.|.+.+|+|++|+++.++..++-|+.+...+|+..+.+++|.++| +++++.+.+|
T Consensus 101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c 180 (472)
T KOG2067|consen 101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC 180 (472)
T ss_pred ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ChhhhccCCHHHHHHHHHhhcCCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCC--CCCCCCCCCCCCceEEecCC-----
Q 012528 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADS----- 306 (461)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~li~~~~~~lp~~~--~~~~~~~~~~~~~~~~~~~~----- 306 (461)
+++.+++|+.+.|.+|.+++|+|.||+++.|||+||++++.+++||+++|+.. +...++++|+||...+..+.
T Consensus 181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~ 260 (472)
T KOG2067|consen 181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG 260 (472)
T ss_pred ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999844 34457789999976665432
Q ss_pred CCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEE
Q 012528 307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (461)
Q Consensus 307 ~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~ 386 (461)
....+||+++|++++ ++++|.+++.||+.+||||||||||||||||+||||.+|.++++|+|+|.|+++.|.|+|+|+
T Consensus 261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg 338 (472)
T KOG2067|consen 261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG 338 (472)
T ss_pred ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence 116799999999996 588899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccCCC
Q 012528 387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCRYF 460 (461)
Q Consensus 387 i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~~~ 460 (461)
|+.+++|+++.++++++.+|+..+.. | ++++|++|||.++++.++||+|++...+||+|||++.+|++++-.
T Consensus 339 i~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~ 410 (472)
T KOG2067|consen 339 IYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPD 410 (472)
T ss_pred EeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHH
Confidence 99999999999999999999999987 4 999999999999999999999999999999999999999998753
No 2
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-61 Score=451.19 Aligned_cols=375 Identities=31% Similarity=0.567 Sum_probs=352.1
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEec
Q 012528 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (461)
|+++.++|+||++|+.++...++++|+++|++|+++|++.+.|.+||||||+|+||++++...+..+++.+|+.+|++++
T Consensus 32 P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS 111 (467)
T KOG0960|consen 32 PETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS 111 (467)
T ss_pred CcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc
Confidence 46799999999999999997789999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012528 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (461)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (461)
||++.|+++++++++++++++|.|++.+..+.+.+++++|..++.|+++...+-..++++.||..+| ++|++++.+|+.
T Consensus 112 ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 112 REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCC----CCCCCCCCCCCceEEecCCCCCc
Q 012528 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP----REEPKSVYTGGDYRCQADSGDQL 310 (461)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 310 (461)
++|++|+.+||++|.+.||.++||+++.+| |+|+++++++++||++++.... +..+++.|+|.+++...+.- |.
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~l-P~ 270 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDL-PL 270 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCCCC-ch
Confidence 999999999999999999999999999999 9999999999999999774332 22345679999998876632 89
Q ss_pred eEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEE
Q 012528 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (461)
Q Consensus 311 ~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~ 390 (461)
+|+++++++.+ | .++|++++.|.+.|+|....+-.||+--+ ++|-+.+-+. +++.++.+|+..|.++|+|++|+.
T Consensus 271 a~~AiAVEG~~-w-~~pD~~~l~van~iiG~wdr~~g~g~~~~--s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~V 345 (467)
T KOG0960|consen 271 AHIAIAVEGVS-W-AHPDYFALMVANTIIGNWDRTEGGGRNLS--SRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYFV 345 (467)
T ss_pred hheeeeEecCC-c-CCccHHHHHHHHHHhhhhhcccCCccCCc--cHHHHHHHHH-HHHHHHhhhhcccccccceeEEEE
Confidence 99999999995 4 99999999999999999888887877777 9999888765 779999999999999999999999
Q ss_pred e-CcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccCC
Q 012528 391 T-GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCRY 459 (461)
Q Consensus 391 ~-~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~~ 459 (461)
| ++..+++++..+.+++.++.. .+|+.|++|||++++.++...+++..-.+++||||+++||++.+.
T Consensus 346 ~~~~~~iddl~~~vl~eW~rL~~--~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~l 413 (467)
T KOG0960|consen 346 TDNLTMIDDLIHSVLKEWMRLAT--SVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIPL 413 (467)
T ss_pred ecChhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCCh
Confidence 9 789999999999999999998 399999999999999999999999999999999999999999875
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1.7e-48 Score=397.76 Aligned_cols=368 Identities=27% Similarity=0.415 Sum_probs=320.1
Q ss_pred ceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEec
Q 012528 78 KTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (461)
Q Consensus 78 ~~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (461)
+++..+|+||++++..+.+ .+.+++.+++++|+.+|++...|++|++|||+|+|+.+++..++.+.++..|+..+++++
T Consensus 16 ~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~ts 95 (438)
T COG0612 16 GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTS 95 (438)
T ss_pred cceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeecccc
Confidence 4799999999999987777 689999999999999999999999999999999999998888999999999999999999
Q ss_pred ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012528 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (461)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (461)
.|.+.|++++++++++.+|+++.+++.+|.|++++|+++|..+.+|++...++|...+.+.++..+| +||++++..|++
T Consensus 96 ~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~ 175 (438)
T COG0612 96 FDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTE 175 (438)
T ss_pred chhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCC-CCCCCCCCCCCCCC-ceEE-ec--CCCCC
Q 012528 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPS-IHPREEPKSVYTGG-DYRC-QA--DSGDQ 309 (461)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~-~~~~~~~~~~~~~~-~~~~-~~--~~~~~ 309 (461)
+.|.++|.++|++||++||.|+||+|++|| |+++++..+++++|+.|+. .++......+...+ .... .. .....
T Consensus 176 e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (438)
T COG0612 176 ESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLE 255 (438)
T ss_pred HHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCCCchhh
Confidence 999999999999999999999999999999 9999999999999999997 22222222233333 2222 21 12226
Q ss_pred ceEEEEEeecCCCCCCCc-hhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEE
Q 012528 310 LTHFVLAFELPGGWHKDK-DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (461)
Q Consensus 310 ~~~v~l~~~~~~~~~~~~-d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~ 388 (461)
++++.++++.+. ...+ +++++.+++.++|++ ++||||.++|++.|++|+++++...+.+.+.+.++
T Consensus 256 ~~~~~~g~~~~~--~~~~~~~~~~~l~~~llgg~-----------~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~ 322 (438)
T COG0612 256 QAWLALGYPGPD--YDSPDDYAALLLLNGLLGGG-----------FSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIY 322 (438)
T ss_pred hhhhhccccCcC--cCcchhhHHHHHHHHHhCCC-----------cchHHHHHHHHhcCceeeeccccccccccCCceEE
Confidence 788889999886 4444 788999999999876 56999999999999999999988888888999999
Q ss_pred EEeCcccHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccC
Q 012528 389 GTTGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 389 ~~~~p~~~~~~i~~~~~~l~~l~~~--g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~ 458 (461)
+.+.+.+..++.+.+.+++..+++. +.+++++++++|..+...+....+++...++.++.+....+...+
T Consensus 323 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 394 (438)
T COG0612 323 AGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLIT 394 (438)
T ss_pred EEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCccC
Confidence 9998666666666666555555443 238999999999999999999999999999999877665455443
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.8e-45 Score=383.98 Aligned_cols=330 Identities=18% Similarity=0.184 Sum_probs=284.4
Q ss_pred EEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHH-HHHHHHHHcCCeeeEEecce
Q 012528 81 ISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL-RIVREVEAIGGNVQASASRE 158 (461)
Q Consensus 81 ~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~-~l~~~l~~~g~~~~~~~~~~ 158 (461)
.++|+||++|++.+.+ .+.+++.++|++|+.+|+++..|++||+|||+|+||++++.. ++.+.++.+|+++|++++.|
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 4689999999965555 689999999999999999999999999999999999999985 79999999999999999999
Q ss_pred eEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 012528 159 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 237 (461)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~ 237 (461)
+++|++++++++++.+|+++.+++.+|.|++++|+++|+.+++|++...++|...+.+.+...+| +|||+++..|+.++
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hccCC---HHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC--CCCCCCCCceEEecCCCCCce
Q 012528 238 INRLN---STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLT 311 (461)
Q Consensus 238 l~~it---~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 311 (461)
|+.++ .++|++||+++|.|+||+++|+| +++++++++++++|+.|+....+.. +.+.+..+...+.. ...++.
T Consensus 162 L~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~q~ 240 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAG-GSEPRL 240 (696)
T ss_pred HhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEe-cCcceE
Confidence 99876 99999999999999999999999 9999999999999999986544322 12222233233322 212566
Q ss_pred EEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcc--eEEEEE
Q 012528 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG--MFGIQG 389 (461)
Q Consensus 312 ~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~--~~~i~~ 389 (461)
++.++++.++ ..+++ ++.+++.||+++ +.++|+.+||+ +|++|++++.. .+.+.+ .|.|++
T Consensus 241 ~l~~~~p~~~--~~d~~--al~lL~~iLg~g-----------~sSrL~~~LRe-~GLaysV~s~~-~~~~~g~~lf~I~~ 303 (696)
T TIGR02110 241 WLLFALAGLP--ATARD--NVTLLCEFLQDE-----------APGGLLAQLRE-RGLAESVAATW-LYQDAGQALLALEF 303 (696)
T ss_pred EEEEeecCCC--CCChH--HHHHHHHHhCCC-----------cchHHHHHHHH-CCCEEEEEEec-cccCCCCcEEEEEE
Confidence 6666666544 34333 578999999987 45999999997 79999999865 455544 899999
Q ss_pred Ee---CcccHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHH
Q 012528 390 TT---GSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTK 429 (461)
Q Consensus 390 ~~---~p~~~~~~i~~~~~~l~~l~~~--g~~s~~el~~ak~~~~ 429 (461)
.+ .+++.+++++.+.++|..++++ + ++.+|++++|+.-.
T Consensus 304 ~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~-~~~eel~rlk~~~~ 347 (696)
T TIGR02110 304 SARCISAAAAQQIEQLLTQWLGALAEQTWA-EQLEHYAQLAQRRF 347 (696)
T ss_pred EEcCCCccCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhhh
Confidence 97 3568999999999999999887 5 99999999999833
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=8.3e-42 Score=380.45 Aligned_cols=363 Identities=14% Similarity=0.154 Sum_probs=304.0
Q ss_pred CCCCCceEEEEcCCCcEEEEec-CCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCC-HHHHHHHHHHcCCe
Q 012528 73 YVEPGKTKISTLPNGVKIASET-SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGN 150 (461)
Q Consensus 73 ~~~~~~~~~~~L~NGl~v~~~~-~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s-~~~l~~~l~~~g~~ 150 (461)
..++..++..+|+||++|++.+ ...+.+.+.+++++|+++|+++..|++||+|||+|+||++++ ..++.+.++.+||.
T Consensus 38 ~~d~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~ 117 (961)
T PRK15101 38 EKDPRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGS 117 (961)
T ss_pred CCCccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCC
Confidence 3344678899999999999654 456899999999999999999999999999999999999996 57899999999999
Q ss_pred eeEEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCC
Q 012528 151 VQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALAN 229 (461)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~ 229 (461)
+|++++.++++|++++++++++.+|+++.+++.+|.|++++++++|+.+.+|++...++|...+.+.+...+| +|||++
T Consensus 118 ~NA~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~ 197 (961)
T PRK15101 118 HNASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSR 197 (961)
T ss_pred ccceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999998888999999999999999 999999
Q ss_pred CCCCChhhhccC----CHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC--CCCCCC---CCc
Q 012528 230 PLLAPESAINRL----NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYT---GGD 299 (461)
Q Consensus 230 ~~~~~~~~l~~i----t~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~--~~~~~~---~~~ 299 (461)
+..|+.++|.++ +.++|++||++||.|+||+++|+| ++++++.++++++|+.||+...+.. ..+++. .+.
T Consensus 198 ~~~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (961)
T PRK15101 198 FSGGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGI 277 (961)
T ss_pred CCCCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCe
Confidence 999999999997 699999999999999999999999 9999999999999999987643211 112221 111
Q ss_pred eEEecCCCCCceEEEEEeecCCCCCC-CchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccc
Q 012528 300 YRCQADSGDQLTHFVLAFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI 378 (461)
Q Consensus 300 ~~~~~~~~~~~~~v~l~~~~~~~~~~-~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~ 378 (461)
.....+ ..++..+.+.|..|+ .. ..+.....++..+|+++++ ++|+..|+ +.||+|+++++...
T Consensus 278 ~~~~~~-~~~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~-----------g~l~~~L~-~~gla~~v~s~~~~ 342 (961)
T PRK15101 278 IIHYVP-AQPRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSP-----------GTLSDWLQ-KQGLAEGISAGADP 342 (961)
T ss_pred EEEEEE-CCCCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCC-----------CcHHHHHH-HcCccceeeecccc
Confidence 211112 226778889999886 22 2233356789999987632 56776664 78999999988653
Q ss_pred c--CCcceEEEEEEeCcc---cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 012528 379 Y--NHSGMFGIQGTTGSD---FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM-NLESRMVVSEDIGRQVL 451 (461)
Q Consensus 379 ~--~~~~~~~i~~~~~p~---~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~-~~~s~~~~~~~i~~~~~ 451 (461)
+ .+.+.|.|++.+.++ +.+++++.+.++|..++++| ++++||+++|+.+...+.. ...++...++.++..+.
T Consensus 343 ~~~~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (961)
T PRK15101 343 MVDRNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKG-IDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTML 420 (961)
T ss_pred ccCCCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhh
Confidence 3 467899999999884 78999999999999999998 9999999999999887744 34455556666666543
No 6
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=3.7e-34 Score=316.94 Aligned_cols=362 Identities=15% Similarity=0.130 Sum_probs=286.8
Q ss_pred ceEEEEcCCCcEEEEecCCC---CeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcC--Ceee
Q 012528 78 KTKISTLPNGVKIASETSVS---PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG--GNVQ 152 (461)
Q Consensus 78 ~~~~~~L~NGl~v~~~~~~~---~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g--~~~~ 152 (461)
.+...-.+||++|++...+. +.+.+.++++.|+ ....|++|++|||+|+|+++++..++...++..| +.+|
T Consensus 91 ~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~----~d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lN 166 (1119)
T PTZ00432 91 ATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPP----HNDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLN 166 (1119)
T ss_pred EEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCC----CCCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCcc
Confidence 44556677999999665554 4789999999997 3457999999999999999999999999998866 6799
Q ss_pred EEecceeEEEEEEccCC-CHHHHHHHHHHhhhCCCCCHHHH--HH---------H--------------------HHHHH
Q 012528 153 ASASREQMGYSFDALKT-YVPEMVELLIDCVRNPVFLDWEV--NE---------Q--------------------LTKVK 200 (461)
Q Consensus 153 ~~~~~~~~~~~~~~~~~-~l~~~l~ll~~~~~~p~f~~~~~--~~---------~--------------------k~~~~ 200 (461)
++++.|+++|.+.++++ ++..+|+++.|.+.+|.|+++++ .+ + +..+.
T Consensus 167 A~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~ 246 (1119)
T PTZ00432 167 AYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVY 246 (1119)
T ss_pred ccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHH
Confidence 99999999999999885 69999999999999999988763 22 1 67799
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhh
Q 012528 201 SEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLL 279 (461)
Q Consensus 201 ~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~ 279 (461)
+|++...++|...+.+.+.+.+|+|||+++..|++++|..+|.+++++||++||.|+|++++++| ++++++.++++++|
T Consensus 247 ~Emk~~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f 326 (1119)
T PTZ00432 247 SEMKKRFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYL 326 (1119)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHH
Confidence 99999999999999999998888889999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCC--------CCC-CC--CCCCCceEEe--c-CCCCCceEEEEE-eecCCCC----------CCCchhHHHHH
Q 012528 280 SDLPSIHPR--------EEP-KS--VYTGGDYRCQ--A-DSGDQLTHFVLA-FELPGGW----------HKDKDAMTLTV 334 (461)
Q Consensus 280 ~~lp~~~~~--------~~~-~~--~~~~~~~~~~--~-~~~~~~~~v~l~-~~~~~~~----------~~~~d~~~~~v 334 (461)
+.+|..... ... .+ .+..+..++. . ..+..+.++.++ |..++.. .+.+++.++.|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~V 406 (1119)
T PTZ00432 327 TKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLV 406 (1119)
T ss_pred hhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHH
Confidence 888754211 000 11 1111222221 1 111245666665 9874210 12368899999
Q ss_pred HHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEE-EeeccccCCcceEEEEEE-eCc-------ccHHHHHHHHHH
Q 012528 335 LQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSF-SAFSNIYNHSGMFGIQGT-TGS-------DFVSKAIDLAAR 405 (461)
Q Consensus 335 l~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~-~a~~~~~~~~~~~~i~~~-~~p-------~~~~~~i~~~~~ 405 (461)
|+.+|+++++ |+|++.||+ .|++|++ .++.....+.+.|.|++. +++ ++++++.+.+.+
T Consensus 407 Ls~lLggg~s-----------S~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~ 474 (1119)
T PTZ00432 407 LNYLLLGTPE-----------SVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLN 474 (1119)
T ss_pred HHHHHcCCCc-----------cHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHH
Confidence 9999998754 999999996 6999996 445555667788888876 442 347799999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHhcCcc
Q 012528 406 ELISVATPGEVDQVQLDRAKQSTKSAILMNLES----RMVVSEDIGRQVLTYGER 456 (461)
Q Consensus 406 ~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s----~~~~~~~i~~~~~~~g~~ 456 (461)
+|.+++++| +++++|+++|+++..++....-. .-..+..+...|+..+.+
T Consensus 475 ~L~~l~~eG-i~~eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp 528 (1119)
T PTZ00432 475 ALTKVVTEG-FNKSAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDP 528 (1119)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCH
Confidence 999999998 99999999999998888654321 255666777777643443
No 7
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=100.00 E-value=1.3e-32 Score=258.16 Aligned_cols=345 Identities=27% Similarity=0.424 Sum_probs=286.4
Q ss_pred ceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecc
Q 012528 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (461)
Q Consensus 78 ~~~~~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (461)
..+..+|.||++|...+.++++.++.+.+++|++||+..+.|++|+++...++.|.+++...+.+.++..|+.++.+++|
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tR 101 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATR 101 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeec
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChh
Q 012528 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL-TKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPES 236 (461)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k-~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~ 236 (461)
|.+.|+++++.++++..|.+|.+...+|.|.+||++... .++..++.. .+|+..+.+.+|+++|.+-++++++.+.-
T Consensus 102 e~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~~--~t~~~~a~e~lH~aAfRngLgnslY~p~~ 179 (429)
T KOG2583|consen 102 ELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLAY--QTPYTIAIEQLHAAAFRNGLGNSLYSPGY 179 (429)
T ss_pred ceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhhh--cChHHHHHHHHHHHHHhcccCCcccCCcc
Confidence 999999999999999999999999999999999999998 777666544 78999999999999993389999999988
Q ss_pred hhccCCHHHHHHHHHhhcCCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCceEEecCCCCCceEEEEE
Q 012528 237 AINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLA 316 (461)
Q Consensus 237 ~l~~it~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~li~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 316 (461)
.+.+++.++|..|.+++|...|++++.+|+||+.++.+.+++ ..++...+....+..|.|++.+..... ...|++++
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~-~~~~~~~~~k~a~a~~~gGe~Rk~~~g--~~~~v~va 256 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEY-APIRDGLPLKPAPAKYSGGEARKDARG--NRVHVAVA 256 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHh-ccccCCCCCCCCCccccCCccccccCC--ceeEEEEe
Confidence 999999999999999999999999999999999999999998 344444444445567889988766555 67788776
Q ss_pred eecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEEeCcccH
Q 012528 317 FELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 396 (461)
Q Consensus 317 ~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~~~ 396 (461)
-++-.. .+.+...+..++.+.|+....- --|. +-+-+-.-...+..-+++++...|.|.|+|++++..+..++
T Consensus 257 gegAAa-~~~k~~~a~av~~~~Lg~~~~~---k~~t---~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a 329 (429)
T KOG2583|consen 257 GEGAAA-GNLKVLAAQAVLLAALGNSAPV---KRGT---GLLSEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQA 329 (429)
T ss_pred cCcccc-cchHHHHHHHHHHHHHhccccc---cccc---chHHHHHhhccccCceeeeecccccCCceEEEEEEecCccH
Confidence 655542 3578888999999999965200 0011 22322222222234477889999999999999999999899
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Q 012528 397 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN 435 (461)
Q Consensus 397 ~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~ 435 (461)
.+++......+...+..+ ++......+++.++....+.
T Consensus 330 ~~~v~s~v~~lks~~~~~-id~~~~~a~~~~l~~~~~ss 367 (429)
T KOG2583|consen 330 GKVVSSEVKKLKSALVSD-IDNAKVKAAIKALKASYLSS 367 (429)
T ss_pred HHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhcc
Confidence 999999999998887765 66666666666655555433
No 8
>PRK15101 protease3; Provisional
Probab=100.00 E-value=3.5e-31 Score=295.27 Aligned_cols=377 Identities=9% Similarity=0.049 Sum_probs=291.8
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEEecCC----CCeEEEEEEEcccccCCCCCCCcHHHHHHHhh
Q 012528 53 SSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSV----SPVASISLYVGCGSIYESPISFGTTHLLERMA 128 (461)
Q Consensus 53 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~~~~~----~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~ 128 (461)
.+|+.|+.+|......+..... ...+.+.++||++||+.+.+ .|++.+.+.+.+|...+++...|++.|+..|+
T Consensus 499 ~lP~~n~fip~~~~~~~~~~~~--~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll 576 (961)
T PRK15101 499 SLPELNPYIPDDFSLIKADKAY--KHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA 576 (961)
T ss_pred CCCCCCCccCCCCeeccCCCCC--CCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 4577888888765444322221 23478899999999965543 58999999999999999999999999999987
Q ss_pred cCCCCCCCHHHHHHHHHHcCCeeeEEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhc-
Q 012528 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVS- 207 (461)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~- 207 (461)
+.+..++....+..|.+++.. +.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.+.+++++..
T Consensus 577 -----~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~ 650 (961)
T PRK15101 577 -----GLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEK 650 (961)
T ss_pred -----HHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 445566777788889999999 7999999999999999999999999999999999999999999999998654
Q ss_pred CChHHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCC
Q 012528 208 NNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSI 285 (461)
Q Consensus 208 ~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~ 285 (461)
..|...+...+ ..+ .||++.+ .++.+.|+++|.+++++|++++|.+.+++++++| ++.+++.++++++++.++..
T Consensus 651 ~~~~~~~~~~~--~~~~~~py~~~-~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~ 727 (961)
T PRK15101 651 GKAYEQAIMPA--QMLSQVPYFER-DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGAD 727 (961)
T ss_pred cCcHHHHHHHH--HHHhcCCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccC
Confidence 34443333322 235 8898864 5688999999999999999999999999999999 99999999999988887643
Q ss_pred CCCC-CC--CCCCCCCceEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHH
Q 012528 286 HPRE-EP--KSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRV 362 (461)
Q Consensus 286 ~~~~-~~--~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~l 362 (461)
+... .. .....+....+.......+..+.+.|..++ .+ .....++..||+++ |++|||++|
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~---~~~~~v~~~lLg~~-----------~ssrlf~~L 791 (961)
T PRK15101 728 GTEWWRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTG--YD---EYQSSAYSSLLGQI-----------IQPWFYNQL 791 (961)
T ss_pred CcccccccceEeCCCCeEEEecCCCCCCCeEEEEEEeCC--CC---CHHHHHHHHHHHHH-----------HhHHHHHHH
Confidence 2211 10 011112222233222224556666665443 22 36677888888865 669999999
Q ss_pred HhhCCCeEEEEeeccccCCcceEEEEEEeC---cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCh
Q 012528 363 LNEFPQVQSFSAFSNIYNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 439 (461)
Q Consensus 363 Re~~g~~Y~~~a~~~~~~~~~~~~i~~~~~---p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~ 439 (461)
|++.|++|+|+++.....+.+.+.++++++ |+.+.+.++.+.+++....+ + +|++||+++|+.+++++....++.
T Consensus 792 Rtk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~-~-lt~eE~~~~k~~l~~~~~~~~~sl 869 (961)
T PRK15101 792 RTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLR-A-MKPEEFAQYQQALINQLLQAPQTL 869 (961)
T ss_pred HHHhhhceEEEEEeeccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCH
Confidence 999999999999887776666666666554 66778888888877654444 5 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccC
Q 012528 440 MVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 440 ~~~~~~i~~~~~~~g~~~~ 458 (461)
...+..++.++...+.+.+
T Consensus 870 ~~~a~~~~~~i~~~~~~fd 888 (961)
T PRK15101 870 GEEASRLSKDFDRGNMRFD 888 (961)
T ss_pred HHHHHHHHHHHhcCCCCcC
Confidence 9999999999875554444
No 9
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-30 Score=269.11 Aligned_cols=346 Identities=18% Similarity=0.217 Sum_probs=286.4
Q ss_pred CCCCCceEEEEcCCCcEEEE-ecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCC-HHHHHHHHHHcCCe
Q 012528 73 YVEPGKTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGN 150 (461)
Q Consensus 73 ~~~~~~~~~~~L~NGl~v~~-~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s-~~~l~~~l~~~g~~ 150 (461)
..+...++..+|+||+++.+ .+...+++...+.|+.|+..+|.+..|+||++|||+|.|+++++ ...+..+|..+||.
T Consensus 18 ~~d~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs 97 (937)
T COG1025 18 ALDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGS 97 (937)
T ss_pred cccCcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCc
Confidence 34446889999999999995 55557799999999999999999999999999999999999975 45689999999999
Q ss_pred eeEEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCC
Q 012528 151 VQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALAN 229 (461)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~ 229 (461)
.||+|..+.|+|.+++.++.++.+|+.+.++|.+|.|+++..++++..+.+|+.....+....+.+.....+- +||+.+
T Consensus 98 ~NA~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~sr 177 (937)
T COG1025 98 HNASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSK 177 (937)
T ss_pred cccccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999998888888888888888888 999999
Q ss_pred CCCCChhhhcc----CCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCCC--CCCC----CC
Q 012528 230 PLLAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYT----GG 298 (461)
Q Consensus 230 ~~~~~~~~l~~----it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~~--~~~~----~~ 298 (461)
...|..++|.. ...++|.+||++||++++|+++|.| -+.+++.+++.++|+.+|+........ +++. +.
T Consensus 178 Fs~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ 257 (937)
T COG1025 178 FSTGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGK 257 (937)
T ss_pred cCCCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCc
Confidence 99999999987 4578999999999999999999999 999999999999999999766543322 3332 22
Q ss_pred ceEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccc
Q 012528 299 DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI 378 (461)
Q Consensus 299 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~ 378 (461)
..++.... +...+.+.|..++. ...-..-....+..++|..++ .-|- ....+.||+-++.++...
T Consensus 258 ii~i~p~~--~~~~L~i~f~i~~~-~~~~~~~~~~~~s~Lig~es~-----------gsL~-~~Lk~~Glit~l~a~~~~ 322 (937)
T COG1025 258 IIHIVPAK--PRPRLRIYFPIDDN-SAKFRSKPDEYLSHLIGNESP-----------GSLL-AWLKKQGLITELSAGLDP 322 (937)
T ss_pred eEEeccCC--CCceEEEEEEcCCc-ccccccCCHHHHHHHhccCCC-----------chHH-HHHHhccchhhhcccccc
Confidence 22222223 67889999999973 222235566788889987643 2333 445677999999998876
Q ss_pred cC-CcceEEEEEEeC---cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 012528 379 YN-HSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 434 (461)
Q Consensus 379 ~~-~~~~~~i~~~~~---p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~ 434 (461)
+. +.+.|.|.+.-. -++.+++|..+++.++-+.++| +....++...+-.-..+..
T Consensus 323 ~~~n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~-~~~~~f~Elq~v~~l~f~y 381 (937)
T COG1025 323 ISGNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKG-IPKYTFDELQNVLDLDFRY 381 (937)
T ss_pred ccCCcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhcc
Confidence 55 778888876653 4688999999999999999988 8888887766654444433
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.8e-29 Score=261.56 Aligned_cols=361 Identities=15% Similarity=0.169 Sum_probs=288.5
Q ss_pred CCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCC-HHHHHHHHHHcCCeee
Q 012528 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (461)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (461)
+...+...+|+||+++.+...+ .+.++..+.|..|+..||.+..|+||++|||+|.|+++++ ...+.+.+..+||.-|
T Consensus 24 d~r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssN 103 (974)
T KOG0959|consen 24 DTREYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSN 103 (974)
T ss_pred CccceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccc
Confidence 3358899999999999954434 5588899999999999999999999999999999999976 5567888999999999
Q ss_pred EEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012528 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (461)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~ 231 (461)
|+|+.++|+|.+.+..++++.+|+.+.+++..|.|+++++++++.++..|.+...++......+.....+- +||++...
T Consensus 104 A~T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~ 183 (974)
T KOG0959|consen 104 AYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFS 183 (974)
T ss_pred cccccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998998888888 99999999
Q ss_pred CCChhhhccCC-----HHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC--CCCC----CCCc
Q 012528 232 LAPESAINRLN-----STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVY----TGGD 299 (461)
Q Consensus 232 ~~~~~~l~~it-----~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~--~~~~----~~~~ 299 (461)
.|..+.|.... .+.|.+||++||.+++|+++|+| .+.+++..++.+.|+.+++...+.+. ..++ .++.
T Consensus 184 tGN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~e~~~~~ 263 (974)
T KOG0959|consen 184 TGNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKL 263 (974)
T ss_pred ccchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCChHHhCcE
Confidence 99999999988 89999999999999999999999 99999999999999999876654431 1222 2233
Q ss_pred eEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeecc-c
Q 012528 300 YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSN-I 378 (461)
Q Consensus 300 ~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~-~ 378 (461)
+.+..-. +...+.+.|..|+. ...-+.-....+..++|..|. +-|...|+ +.||+-++.++.. .
T Consensus 264 ~~v~pik--~~~~l~is~~~p~~-~~~y~~kP~~y~~hLigheg~-----------GSL~~~Lk-~~gw~~sl~a~~~~~ 328 (974)
T KOG0959|consen 264 VRVVPIK--DGRSLMISWPVPPL-NHHYKSKPLRYLSHLIGHEGP-----------GSLLSYLK-RLGWATSLEAGIPEF 328 (974)
T ss_pred EEEEecc--ccceEEEEEecCCc-ccccccCcHHHHHHHhccCCc-----------chHHHHHH-HhhchheeecCCCcc
Confidence 3333333 56788899999974 355566677888889987643 34555776 4699999999877 3
Q ss_pred cCCcceEEEEEEeC---cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHH
Q 012528 379 YNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAIL-MNLESRMVVSEDIGRQVL 451 (461)
Q Consensus 379 ~~~~~~~~i~~~~~---p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~-~~~~s~~~~~~~i~~~~~ 451 (461)
..+.+.|.|.+.-. -+++++++..++..+..+...| +-+.-++.....-...+. +..+.+...+..++.++.
T Consensus 329 as~~~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~-~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq 404 (974)
T KOG0959|consen 329 ASGYSFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAG-PEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQ 404 (974)
T ss_pred ccccceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcc
Confidence 44667777766654 3678999999999999888766 443333322221111111 223466677777776655
No 11
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.90 E-value=9.5e-23 Score=176.91 Aligned_cols=146 Identities=37% Similarity=0.565 Sum_probs=138.4
Q ss_pred EEEEecC-CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecceeEEEEEEcc
Q 012528 89 KIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (461)
Q Consensus 89 ~v~~~~~-~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (461)
||++... ..+.+.+++++++|+++|++...|++|+++||+++|+.+++..++.+.++..|+.++++++++++.|.++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~ 80 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVL 80 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEe
Confidence 5775544 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 012528 168 KTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (461)
Q Consensus 168 ~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~ 234 (461)
+++++.+|++|.+++.+|.|++++|+++|..+..++++...+|...+.+.+++.+| ++||++++.|+
T Consensus 81 ~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 81 SEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp GGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred cccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999998876
No 12
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=203.63 Aligned_cols=354 Identities=13% Similarity=0.127 Sum_probs=270.5
Q ss_pred cCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC--eeeEEecceeEE
Q 012528 84 LPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG--NVQASASREQMG 161 (461)
Q Consensus 84 L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~--~~~~~~~~~~~~ 161 (461)
-++|+++++..++.+....++.++ -++....|++|.|||+.++|+.+++-.+..-.+..... -+||.|..|.|+
T Consensus 27 ~~TGa~l~hi~~~d~~~vFsi~F~----T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~ 102 (978)
T COG1026 27 EKTGAELAHIKNEDPNNVFSIAFK----TEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTV 102 (978)
T ss_pred ccCCceEEEecCCCcCceEEEEee----cCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcce
Confidence 348999997777777666666664 34567789999999999999999987775444433322 389999999999
Q ss_pred EEEEccC-CCHHHHHHHHHHhhhCCCCCHHHHHHH--------------HHHHHHHHHhhcCChHHHHHHHHHHHhc-CC
Q 012528 162 YSFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQ--------------LTKVKSEISEVSNNPQSLLLEAIHSAGY-SG 225 (461)
Q Consensus 162 ~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~~~~~--------------k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~ 225 (461)
|-+++.. +++-.+|.+..|.+.+|.+.++.|.++ +..+..|++....++..++++.+.+.+| +.
T Consensus 103 YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ 182 (978)
T COG1026 103 YPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGT 182 (978)
T ss_pred eeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHhhCCCc
Confidence 9997665 689999999999999999999998876 4556778888889999999999999999 88
Q ss_pred CCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhh-hCCCCCCCCCCC-CC-CCC---CCC
Q 012528 226 ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL-LSDLPSIHPREE-PK-SVY---TGG 298 (461)
Q Consensus 226 p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~-~~~lp~~~~~~~-~~-~~~---~~~ 298 (461)
.|+....|.+..|..++.+++++||+++|+|+|..++++| ++.+++...++.. +...+....... +. ..+ ...
T Consensus 183 ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~~~~~~ 262 (978)
T COG1026 183 TYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRRK 262 (978)
T ss_pred cccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccCccccc
Confidence 8999999999999999999999999999999999999999 9999999999887 655544332111 11 111 111
Q ss_pred ceEEe---cCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCe-EEEEe
Q 012528 299 DYRCQ---ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV-QSFSA 374 (461)
Q Consensus 299 ~~~~~---~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~-Y~~~a 374 (461)
..... ...+..+..+.++|.++.. .+..+..++.||..+|-++.+ ++|.+.|.|- |++ +.++.
T Consensus 263 ~~~ypi~~~~~de~q~~~~lsWl~~~~-~d~~~~lal~vL~~iLl~~~a-----------sPl~~~lies-glg~~~~~g 329 (978)
T COG1026 263 VLEYPISFDEEDEDQGLLSLSWLGGSA-SDAEDSLALEVLEEILLDSAA-----------SPLTQALIES-GLGFADVSG 329 (978)
T ss_pred ceeeccCCCCCCCceeEEEEEEecCCc-ccHHHHHHHHHHHHHHccCcc-----------cHHHHHHHHc-CCCcccccc
Confidence 11111 1233368888899999874 366789999999999988866 9999999976 544 44444
Q ss_pred eccccCCcceEEEEEE-eCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChH--HHHHHHHHHHH
Q 012528 375 FSNIYNHSGMFGIQGT-TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRM--VVSEDIGRQVL 451 (461)
Q Consensus 375 ~~~~~~~~~~~~i~~~-~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~--~~~~~i~~~~~ 451 (461)
.+...-....|.+.+. +..+++++.-+.+++.|+.+..+| ++.+.++.++.++.-++......+. .++.++..-|+
T Consensus 330 ~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~g-i~~~~ie~~~~q~E~s~ke~~s~pfgl~l~~~~~~gw~ 408 (978)
T COG1026 330 SYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNG-IDKKLIEAILHQLEFSLKEVKSYPFGLGLMFRSLYGWL 408 (978)
T ss_pred eeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhhhcCCCccHHHHHHhccccc
Confidence 3443333455555554 456788999999999999999999 9999999999998888877644332 33444444444
Q ss_pred hcCc
Q 012528 452 TYGE 455 (461)
Q Consensus 452 ~~g~ 455 (461)
.-+.
T Consensus 409 ~G~d 412 (978)
T COG1026 409 NGGD 412 (978)
T ss_pred cCCC
Confidence 3333
No 13
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.89 E-value=2.6e-22 Score=179.45 Aligned_cols=175 Identities=25% Similarity=0.370 Sum_probs=145.2
Q ss_pred cCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCC---CCC-CC-C-C--CCCCCceEEecCCCCCc
Q 012528 240 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH---PRE-EP-K-S--VYTGGDYRCQADSGDQL 310 (461)
Q Consensus 240 ~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~---~~~-~~-~-~--~~~~~~~~~~~~~~~~~ 310 (461)
+||.++|++||++||.|+||+++++| ++++++.++++++|+.||... ... .. . . ...+......... .+.
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKD-ESQ 79 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESS-SSS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccc-ccc
Confidence 57899999999999999999999999 999999999999999998653 111 11 1 1 1222222222222 278
Q ss_pred eEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEE
Q 012528 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (461)
Q Consensus 311 ~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~ 390 (461)
..+.++|.+++. .+.++..++.++..+|+++ ++++|+..||++.+++|++.++...+.+.+.|.+++.
T Consensus 80 ~~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-----------~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~ 147 (184)
T PF05193_consen 80 SIVSIAFPGPPI-KDSKDYFALNLLSSLLGNG-----------MSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQ 147 (184)
T ss_dssp EEEEEEEEEEET-GTSTTHHHHHHHHHHHHCS-----------TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEE
T ss_pred cccccccccccc-cccchhhHHHHHHHHHhcC-----------ccchhHHHHHhccccceEEEeeeeccccceEEEEEEE
Confidence 999999999973 2889999999999999976 6699999999999999999999877778999999999
Q ss_pred eCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 012528 391 TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQST 428 (461)
Q Consensus 391 ~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~ 428 (461)
+.+++..++++.+.++++.+++.| ++++||+++|+++
T Consensus 148 ~~~~~~~~~~~~~~~~l~~l~~~~-~s~~el~~~k~~L 184 (184)
T PF05193_consen 148 VTPENLDEAIEAILQELKRLREGG-ISEEELERAKNQL 184 (184)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhcC
Confidence 999999999999999999999987 9999999999875
No 14
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.3e-18 Score=176.07 Aligned_cols=366 Identities=11% Similarity=0.109 Sum_probs=274.8
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEE-ecCC--C-CeEEEEEEEcccccCCCCCCCcHHHHHHHhh
Q 012528 53 SSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIAS-ETSV--S-PVASISLYVGCGSIYESPISFGTTHLLERMA 128 (461)
Q Consensus 53 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~-~~~~--~-~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~ 128 (461)
.+|..|+.+|....+.....+...+ ....-..|.++|. .+.. . |++.+.+.+++..+..++....+..|+..++
T Consensus 478 ~lP~~N~fIp~~~~~~~~~~~~~~p--~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la 555 (937)
T COG1025 478 SLPEPNPFIPDDVSLIKSEKKFTFP--QLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLA 555 (937)
T ss_pred cCCCCCCCCCccccccccccCCCCc--hhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 3566777777765442222222221 2222234566664 3333 4 8999999999999998877777888888888
Q ss_pred cCCCCCCCHHHHHHHHHHcCCeeeEEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHh-hc
Q 012528 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE-VS 207 (461)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~-~~ 207 (461)
+... .++.......|..++...+.++..++++|.++.++++++.+.+.+..-.++++.|+..|+.+.++++. ..
T Consensus 556 ~dal-----~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~ 630 (937)
T COG1025 556 NDAL-----DKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALT 630 (937)
T ss_pred HHHH-----HhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4333 34444567788999999999999999999999999999999999999999999999999999999995 57
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCC
Q 012528 208 NNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH 286 (461)
Q Consensus 208 ~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~ 286 (461)
.+|..++.+.+....- +..++.....+.++.++.+++..|...++......+.++| ++.+++.++++.....++...
T Consensus 631 ~~p~~~~~~~l~~l~~--~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~ 708 (937)
T COG1025 631 GKPYRQALDGLTGLLQ--VPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIG 708 (937)
T ss_pred cCCHHHHHHHhhhhhC--CCCcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccC
Confidence 8999999888887765 4334444456889999999999999999999999999999 999999999988776666444
Q ss_pred CCCC-CC--CCCCCCceEEe-cCCCCCceEEEEEeecCCCCCC-CchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHH
Q 012528 287 PREE-PK--SVYTGGDYRCQ-ADSGDQLTHFVLAFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRR 361 (461)
Q Consensus 287 ~~~~-~~--~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~~~-~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~ 361 (461)
.... .+ -...++..... .....+....++.+... ++ .++.+...++.+++. ..+|.+
T Consensus 709 s~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~---~~~~~~~a~s~Ll~~l~~---------------~~ff~~ 770 (937)
T COG1025 709 STWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQ---YDEIKSSALSSLLGQLIH---------------PWFFDQ 770 (937)
T ss_pred CcccCCCceeccCCCeeEeeeccCCcccccceeEeccc---cchHHHHHHHHHHHHHHh---------------HHhHHH
Confidence 3211 11 12223333222 22222344444444433 34 455566678888877 899999
Q ss_pred HHhhCCCeEEEEeeccccCCcceEEEEEEeC---cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 012528 362 VLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLES 438 (461)
Q Consensus 362 lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~---p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s 438 (461)
||++.+++|.|.+++....++..+.|+++++ |+.+.+.++.+.+.+..... ++++++|+..|+.+++++.....+
T Consensus 771 LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~--~ms~e~Fe~~k~alin~il~~~~n 848 (937)
T COG1025 771 LRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELR--EMSEEDFEQIKKALINQILQPPQN 848 (937)
T ss_pred hhhhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999998888777777888876 66888999999999888877 399999999999999999887777
Q ss_pred hHHHHHHHH
Q 012528 439 RMVVSEDIG 447 (461)
Q Consensus 439 ~~~~~~~i~ 447 (461)
....+.+++
T Consensus 849 l~e~a~r~~ 857 (937)
T COG1025 849 LAEEASRLW 857 (937)
T ss_pred HHHHHHHHH
Confidence 777776666
No 15
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.4e-17 Score=162.49 Aligned_cols=354 Identities=14% Similarity=0.127 Sum_probs=263.5
Q ss_pred CCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHH-HHHHHHH-cCCeeeEEecceeEEE
Q 012528 85 PNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR-IVREVEA-IGGNVQASASREQMGY 162 (461)
Q Consensus 85 ~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~-l~~~l~~-~g~~~~~~~~~~~~~~ 162 (461)
.-|..+++.+...+--.+++.++. .++...|+.|++||-...|+.+++-.+ +.+.|.. +.--+|+++..|++.|
T Consensus 60 ~Tgae~lhl~reD~N~vFsI~FrT----pp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~y 135 (998)
T KOG2019|consen 60 KTGAEVLHLDREDENNVFSIVFRT----PPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFY 135 (998)
T ss_pred CCCceeEeeccCCCCceeEEEeec----CCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCccee
Confidence 368999876666543344444543 355677999999999999999876544 5555543 2334899999999999
Q ss_pred EEEccC-CCHHHHHHHHHHhhhCCCCCHHHHHHH------------------HHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 012528 163 SFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQ------------------LTKVKSEISEVSNNPQSLLLEAIHSAGY 223 (461)
Q Consensus 163 ~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~~~~~------------------k~~~~~el~~~~~~p~~~~~~~l~~~~~ 223 (461)
-+.+.+ +++..+.++-.|....|.+...+|.++ |..+.+|++....+|+.++...+.+.+|
T Consensus 136 PfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~ 215 (998)
T KOG2019|consen 136 PFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALF 215 (998)
T ss_pred ecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhC
Confidence 886655 689999999999999999888888875 6677888888889999999999999999
Q ss_pred -CCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC-CC-CCCCC-C
Q 012528 224 -SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PK-SVYTG-G 298 (461)
Q Consensus 224 -~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~-~~-~~~~~-~ 298 (461)
++.|+....|.+..|..++.+++.+||++||.|+|..+...| +..+++.++++..|........... .. ..+.. .
T Consensus 216 p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~kp~ 295 (998)
T KOG2019|consen 216 PENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFDKPR 295 (998)
T ss_pred ccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccccccCc
Confidence 999999999999999999999999999999999999999999 9999999999877765533222111 11 11211 1
Q ss_pred ceEEe--cC---CCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhC-CCeEEE
Q 012528 299 DYRCQ--AD---SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEF-PQVQSF 372 (461)
Q Consensus 299 ~~~~~--~~---~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~-g~~Y~~ 372 (461)
++... .+ .+..++.+.+.|..+.. .+..+..++.+|..+|-+|.+ |++|+.|.|-. |.-.++
T Consensus 296 rvve~~p~d~~~~p~Kq~~~s~s~L~~~p-~d~~etfaL~~L~~Ll~~gps-----------Sp~yk~LiESGLGtEfsv 363 (998)
T KOG2019|consen 296 RVVEKGPADPGDLPKKQTKCSNSFLSNDP-LDTYETFALKVLSHLLLDGPS-----------SPFYKALIESGLGTEFSV 363 (998)
T ss_pred eeeeecCCCCCCCccceeEEEEEeecCCc-hhHHHHHHHHHHHHHhcCCCc-----------cHHHHHHHHcCCCccccc
Confidence 11111 11 12246677788877764 477789999999999988755 99999998862 333677
Q ss_pred EeeccccCCcceEEEEEEeC-cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 012528 373 SAFSNIYNHSGMFGIQGTTG-SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR-MVVSEDIGRQV 450 (461)
Q Consensus 373 ~a~~~~~~~~~~~~i~~~~~-p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~-~~~~~~i~~~~ 450 (461)
++++..+.-.+.|.|-...- .+++.++-+.+...+.+++..| ++.+.++....++.-++..+--.. -.++..+.-.|
T Consensus 364 nsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~g-fd~drieAil~qiEislk~qst~fGL~L~~~i~~~W 442 (998)
T KOG2019|consen 364 NSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETG-FDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKW 442 (998)
T ss_pred CCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhh
Confidence 77777666667887766654 4678888889999999999998 999999988888776665443321 13344444444
Q ss_pred HhcCc
Q 012528 451 LTYGE 455 (461)
Q Consensus 451 ~~~g~ 455 (461)
...++
T Consensus 443 ~~d~D 447 (998)
T KOG2019|consen 443 INDMD 447 (998)
T ss_pred ccCCC
Confidence 44333
No 16
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-16 Score=158.26 Aligned_cols=334 Identities=14% Similarity=0.141 Sum_probs=243.1
Q ss_pred CcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHc-CCeeeEEecceeEEEEEE
Q 012528 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAI-GGNVQASASREQMGYSFD 165 (461)
Q Consensus 87 Gl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~ 165 (461)
|++|++-.++++.+.-.+.+.. |...+.|+.|-+||+.|+|..+++...+...+... =++.|+.++.|++.|+++
T Consensus 29 kl~va~~~~pts~vhG~f~v~T----Ea~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLS 104 (1022)
T KOG0961|consen 29 KLRVAIGEVPTSMVHGAFSVVT----EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLS 104 (1022)
T ss_pred ceEEEEeecCCcceeeeEEeee----eecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEee
Confidence 7899987777776655555533 33456799999999999999999998887766554 457999999999999998
Q ss_pred ccC-CCHHHHHHHHHHhhhCCCCCHHHHHHH----------HHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCCCCCC
Q 012528 166 ALK-TYVPEMVELLIDCVRNPVFLDWEVNEQ----------LTKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLL 232 (461)
Q Consensus 166 ~~~-~~l~~~l~ll~~~~~~p~f~~~~~~~~----------k~~~~~el~~~~~~p~~~~~~~l~~~~~--~~p~~~~~~ 232 (461)
+.- +.+-.+|....|.+..|.+++++|..+ +..+..|++.....-...+.+......| ..+|.....
T Consensus 105 tag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTG 184 (1022)
T KOG0961|consen 105 TAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETG 184 (1022)
T ss_pred cccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccC
Confidence 665 568999999999999999999999876 4567777777666667777888888899 678888888
Q ss_pred CChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCC--CCCCC-------CCCCCC---c
Q 012528 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP--REEPK-------SVYTGG---D 299 (461)
Q Consensus 233 ~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~--~~~~~-------~~~~~~---~ 299 (461)
|..+.|..+|.+++++||+++|.++||++.++| |++++++...+..-..++.... |+..+ ..+.-. .
T Consensus 185 G~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~ 264 (1022)
T KOG0961|consen 185 GRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTV 264 (1022)
T ss_pred CChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccce
Confidence 999999999999999999999999999999999 9999999987766554432221 11111 111111 2
Q ss_pred eEEecCC-CCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHh-hCCCeEEEEeecc
Q 012528 300 YRCQADS-GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN-EFPQVQSFSAFSN 377 (461)
Q Consensus 300 ~~~~~~~-~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe-~~g~~Y~~~a~~~ 377 (461)
.++..+. +..+..|.++|.+++. .+.....++.||..+|.... -+++-+.+-+ +..++.+++....
T Consensus 265 ~tVefp~~Des~G~v~~aW~g~s~-sD~~t~~a~~vL~dyls~sa-----------vapf~~~fVeieDP~assv~f~~~ 332 (1022)
T KOG0961|consen 265 HTVEFPTDDESRGAVEVAWFGHSP-SDLETHSALHVLFDYLSNSA-----------VAPFQKDFVEIEDPLASSVSFHIA 332 (1022)
T ss_pred eeeecCCcccccceEEEEEcCCCH-HHhhhHHHHHHHHHHhcccc-----------ccccccceEEecCccccceeeeee
Confidence 2333322 2257789999999874 36677789999999998642 1445444433 3355555554433
Q ss_pred ccCCcceEEEEEEe-CcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChH
Q 012528 378 IYNHSGMFGIQGTT-GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRM 440 (461)
Q Consensus 378 ~~~~~~~~~i~~~~-~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~ 440 (461)
+.-...+.+.+.. +.++++.+-..+++.+..-++ ++-+.+.....+.+-+++.++|.+.
T Consensus 333 -~~vrc~i~L~f~gVP~EKi~~~~~k~l~~l~et~~---iDm~Rm~~~i~~t~~~yL~nlE~n~ 392 (1022)
T KOG0961|consen 333 -EGVRCDIRLNFAGVPVEKIDECAPKFLDKLVETAN---IDMERMGYLIDQTILNYLVNLETNA 392 (1022)
T ss_pred -cccceeEEEeecCCcHHHhhhhhHHHHHHHHHhcc---cCHHHHHHHHHHHHHHHHHhhhcCC
Confidence 2223344444444 457777777777776654443 8877777777888888888887663
No 17
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.9e-15 Score=156.10 Aligned_cols=337 Identities=13% Similarity=0.097 Sum_probs=259.2
Q ss_pred CCCcEEEEecCC---CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecceeEE
Q 012528 85 PNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (461)
Q Consensus 85 ~NGl~v~~~~~~---~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (461)
....++|.+..+ -|++.+.+.+.+..+...+...+++.++..++.. ...+....+...|..++.+.+..+..
T Consensus 516 ~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d-----~l~E~~Y~A~~aGl~~~~~~s~~G~~ 590 (974)
T KOG0959|consen 516 TPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKD-----QLNEYLYPALLAGLTYSLSSSSKGVE 590 (974)
T ss_pred CCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHHHHH-----HHhHHHHHHHhccceEEeeecCCceE
Confidence 356788865443 4799999999999999999999999999988843 33345666788899999999999999
Q ss_pred EEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcc
Q 012528 162 YSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240 (461)
Q Consensus 162 ~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~-~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~ 240 (461)
+++.+.+++++.+++.+.+.+.+-..+++.|+..++.+..++++ ...+|...+.+.+...+-. ..+......+.++.
T Consensus 591 ~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~--~~W~~~e~~~al~~ 668 (974)
T KOG0959|consen 591 LRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEE--SIWSKEELLEALDD 668 (974)
T ss_pred EEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhc--cccchHHHHHHhhc
Confidence 99999999999999999999999999999999999999999997 6788888777776666543 33444446688899
Q ss_pred CCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC-C-----------CCCCCCCceEEecC--
Q 012528 241 LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-P-----------KSVYTGGDYRCQAD-- 305 (461)
Q Consensus 241 it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~-~-----------~~~~~~~~~~~~~~-- 305 (461)
++.+++..|..+++.+.-+.++|.| ++.+++..+++.....+ ....+.. + .....|........
T Consensus 669 ~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n 747 (974)
T KOG0959|consen 669 VTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLN 747 (974)
T ss_pred ccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCcccceeccCCceEEEEcccc
Confidence 9999999999999999999999999 99999999876665555 2211111 1 01223333322222
Q ss_pred CCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceE
Q 012528 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 385 (461)
Q Consensus 306 ~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~ 385 (461)
..++.+.+.+.+.+.. .+..+...+.++.+++. .++|+.||++.+++|.+++......+...+
T Consensus 748 ~~~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~---------------ep~Fd~LRTkeqLGYiv~~~~r~~~G~~~~ 810 (974)
T KOG0959|consen 748 KTDDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIK---------------EPAFDQLRTKEQLGYIVSTGVRLNYGTVGL 810 (974)
T ss_pred cCCCCceEEEEEEccc--chhHHHHHHHHHHHHhc---------------cchHHhhhhHHhhCeEeeeeeeeecCccee
Confidence 2335677777787633 57788888999999998 789999999999999998877655555445
Q ss_pred EEEEEe--CcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012528 386 GIQGTT--GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGR 448 (461)
Q Consensus 386 ~i~~~~--~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~ 448 (461)
.|.+++ .++.++..|+.+.+.+..... ++++++++.-+..++..+...-.+......+.|.
T Consensus 811 ~i~Vqs~~~~~~le~rIe~fl~~~~~~i~--~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~~w~ 873 (974)
T KOG0959|consen 811 QITVQSEKSVDYLEERIESFLETFLEEIV--EMSDEEFEKHKSGLIASKLEKPKNLSEESSRYWD 873 (974)
T ss_pred EEEEccCCCchHHHHHHHHHHHHHHHHHH--hcchhhhhhhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 555554 377889999999999988887 3999999999999999998755444433333333
No 18
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.72 E-value=2.2e-15 Score=158.25 Aligned_cols=341 Identities=18% Similarity=0.199 Sum_probs=232.2
Q ss_pred CCCCCCCCCceEEEEcCCCcEEEEecC-CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHc
Q 012528 69 SLPDYVEPGKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAI 147 (461)
Q Consensus 69 ~~~~~~~~~~~~~~~L~NGl~v~~~~~-~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~ 147 (461)
.+|+..+... ....-.|..+|++.+. ++..+++.++++.+.... ...+.+.-+...+...||++++..++..+++.+
T Consensus 518 dvp~~~~k~~-l~~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~-~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~ 595 (978)
T COG1026 518 DVPDPIEKTS-LETEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPS-ELLPYLPLFAFALTNLGTETYSYKELLNQIERH 595 (978)
T ss_pred cCCCcccccc-eeeeccCCcceEEeecCCCCeEEEEEEeecCCCCh-hhhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 3444555433 3445567778875544 567999999999955443 455566666677777899999999999999988
Q ss_pred CCeeeEEec-----------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHHHHhhcCC-hHHHH
Q 012528 148 GGNVQASAS-----------REQMGYSFDALKTYVPEMVELLIDCVRNPVF-LDWEVNEQLTKVKSEISEVSNN-PQSLL 214 (461)
Q Consensus 148 g~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f-~~~~~~~~k~~~~~el~~~~~~-p~~~~ 214 (461)
.|.++++.+ +..++|++.++.++.+++++++.+++.++.| +.+.+....+..++.+.....+ +..++
T Consensus 596 TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A 675 (978)
T COG1026 596 TGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIA 675 (978)
T ss_pred hCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHH
Confidence 665555432 3568999999999999999999999999999 6677777777777777765444 66666
Q ss_pred HHHHHHHhc-CCCCCCCCCCC--hhhhccCC-----------HHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhh
Q 012528 215 LEAIHSAGY-SGALANPLLAP--ESAINRLN-----------STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLL 279 (461)
Q Consensus 215 ~~~l~~~~~-~~p~~~~~~~~--~~~l~~it-----------~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~ 279 (461)
........+ ...+.....|- .+-|.++. .+.|+..+++++..+|+-+++.| .+ ++...+++-|
T Consensus 676 ~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~--~~~~~~e~~l 753 (978)
T COG1026 676 SSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDID--KILDLLENPL 753 (978)
T ss_pred HHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChh--hhHHHHHHHh
Confidence 666555555 43333222111 12222221 35688889999999999777777 43 3333444433
Q ss_pred CCCCC-----CCCCCCC---CCCCCC-CceEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCC
Q 012528 280 SDLPS-----IHPREEP---KSVYTG-GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGP 350 (461)
Q Consensus 280 ~~lp~-----~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggp 350 (461)
-++.. ...+..+ .....+ .......++ +.+..+++|..-...+.++|++++.|+.++|+.
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~--p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~--------- 822 (978)
T COG1026 754 LKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPS--PVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS--------- 822 (978)
T ss_pred hhhhcccCcccccCCCCCCcchhhhccccceEEecc--HHHHHHHhhhccCCCCCCccchHHHHHHHHhcc---------
Confidence 33321 1111111 111112 222333344 344445555333222789999999999999994
Q ss_pred CCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 012528 351 GKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKS 430 (461)
Q Consensus 351 gkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~ 430 (461)
..||.+||++ |++|++++..+. +.|.|.++...+|+ ..+..+++.+.++.+++. ++++.|+++++-..++
T Consensus 823 -----~~lw~~IR~~-GGAYGa~as~~~--~~G~f~f~sYRDPn-~~kt~~v~~~~v~~l~s~-~~~~~d~~~~ilg~i~ 892 (978)
T COG1026 823 -----GYLWNKIREK-GGAYGASASIDA--NRGVFSFASYRDPN-ILKTYKVFRKSVKDLASG-NFDERDLEEAILGIIS 892 (978)
T ss_pred -----chhHHHHHhh-cccccccccccc--CCCeEEEEecCCCc-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhc
Confidence 7899999997 669999887664 45778877778887 668888888888888885 5999999999999888
Q ss_pred HHHH
Q 012528 431 AILM 434 (461)
Q Consensus 431 ~~~~ 434 (461)
.+.+
T Consensus 893 ~~d~ 896 (978)
T COG1026 893 TLDT 896 (978)
T ss_pred cccc
Confidence 7754
No 19
>PTZ00432 falcilysin; Provisional
Probab=99.64 E-value=1.4e-13 Score=153.72 Aligned_cols=325 Identities=14% Similarity=0.104 Sum_probs=219.1
Q ss_pred EcCCCcEEEEecCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHh-hcCCCCCCCHHHHHHHHHHcCCeeeEEe----c
Q 012528 83 TLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERM-AFRSTRNRSHLRIVREVEAIGGNVQASA----S 156 (461)
Q Consensus 83 ~L~NGl~v~~~~~~~~-~~~i~l~i~~G~~~e~~~~~g~a~ll~~~-~~~gt~~~s~~~l~~~l~~~g~~~~~~~----~ 156 (461)
...+|++|+..+.++. .+++.++++.....+ +......|+..+ ...||.++++.++...++...|++++++ +
T Consensus 664 ~~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~--e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~ 741 (1119)
T PTZ00432 664 SDGGSVTVLVHPIESRGILYLDFAFSLDSLTV--DELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSE 741 (1119)
T ss_pred ccCCCcceEEEecCCCCeEEEEEEecCCCCCH--HHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecc
Confidence 3468999997776655 999999999987664 233344454444 5569999999999999999877766542 2
Q ss_pred ------------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 012528 157 ------------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEVS-NNPQSLLLEAIHSAG 222 (461)
Q Consensus 157 ------------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~el~~~~-~~p~~~~~~~l~~~~ 222 (461)
...+.+++.|+.++++++++++.+++.++.|++.+ +....++.+..+.+.. .+...++...+.+..
T Consensus 742 ~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~ 821 (1119)
T PTZ00432 742 TNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKF 821 (1119)
T ss_pred ccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcC
Confidence 33688999999999999999999999999998755 7777777777776543 344444443322211
Q ss_pred c-CCCCCCCCCC--Chhhhc------------cCCHHHHHHHHHhhcCCCCeEEEEeC-C-CHHHHHHHHHhhhCCCCCC
Q 012528 223 Y-SGALANPLLA--PESAIN------------RLNSTLLEEFVAENYTGPRMVLAASG-V-EHDQLVSVAEPLLSDLPSI 285 (461)
Q Consensus 223 ~-~~p~~~~~~~--~~~~l~------------~it~~~l~~f~~~~~~~~~~~l~ivG-v-~~~~l~~li~~~~~~lp~~ 285 (461)
. ..-+.....| ...-|. .+ .+.|.+++++.|+.+++.+.++| . ..+.+.+.+..++..++..
T Consensus 822 S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v-~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~ 900 (1119)
T PTZ00432 822 SVSDYADELVNGYSQLLFLKETLVPLAEKDWSKV-ESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSST 900 (1119)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhcccc
Confidence 1 0001011111 111111 12 35588889999999999999999 5 4566667666677766421
Q ss_pred ----C--CCCC-CCC------CCCC--CceEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCC
Q 012528 286 ----H--PREE-PKS------VYTG--GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGP 350 (461)
Q Consensus 286 ----~--~~~~-~~~------~~~~--~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggp 350 (461)
. .... ... .+.. ....+..+. ...+++.+..... ..+++..++.|+..+|..
T Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~--------- 967 (1119)
T PTZ00432 901 FKENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPT--RVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKN--------- 967 (1119)
T ss_pred cccccccccccccccccccccccCCcccceEEEccC--ceeEEEEeccccc--CCCccCHHHHHHHHHHcc---------
Confidence 1 0100 000 0111 122233444 5666677643332 467789999999999984
Q ss_pred CCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q 012528 351 GKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT--PGEVDQVQLDRAKQST 428 (461)
Q Consensus 351 gkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~--~g~~s~~el~~ak~~~ 428 (461)
+.||.+||++ |++|++++.... .|.|.++..-||. +.+.++.+.+....+++ . .+|+++|+++|-.+
T Consensus 968 -----~yLw~~IR~~-GGAYG~~~~~~~---~G~~~f~SYRDPn-~~~Tl~~f~~~~~~l~~~~~-~~~~~~l~~~iig~ 1036 (1119)
T PTZ00432 968 -----SYLWKTVRMS-LGAYGVFADLLY---TGHVIFMSYADPN-FEKTLEVYKEVASALREAAE-TLTDKDLLRYKIGK 1036 (1119)
T ss_pred -----ccchHHHccc-CCccccCCccCC---CCeEEEEEecCCC-HHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH
Confidence 7899999997 559999865532 4778777777775 66778777777777766 3 39999999999999
Q ss_pred HHHHHH
Q 012528 429 KSAILM 434 (461)
Q Consensus 429 ~~~~~~ 434 (461)
++.+..
T Consensus 1037 ~~~~D~ 1042 (1119)
T PTZ00432 1037 ISNIDK 1042 (1119)
T ss_pred HhccCC
Confidence 888754
No 20
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.3e-13 Score=138.08 Aligned_cols=330 Identities=17% Similarity=0.103 Sum_probs=225.7
Q ss_pred EEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEec--
Q 012528 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS-- 156 (461)
Q Consensus 80 ~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~-- 156 (461)
.....-||++|...+.. +..+++++..+.++.-+. -.+-+.-+++.++..||...+..++.+.+..+.|.++++..
T Consensus 562 ~~v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~ 640 (998)
T KOG2019|consen 562 LEVGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVS 640 (998)
T ss_pred eeeeeccCceeEEeeccCCceEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceec
Confidence 34566799999987776 459999999999997663 44567888999999999999999999999999887776542
Q ss_pred --------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 012528 157 --------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGAL 227 (461)
Q Consensus 157 --------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~-~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~ 227 (461)
.-.+.+...++..+.+.+++++..++.++.|+++ .|+.......+++.+.-.+....+ ....+.+.-.+-
T Consensus 641 s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~-A~~rs~a~l~~a 719 (998)
T KOG2019|consen 641 SDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGF-AAARSAAMLTPA 719 (998)
T ss_pred cCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchh-HhhhhhcccCcc
Confidence 1247788889999999999999999999999854 476666666666664433322222 222222211111
Q ss_pred CC--CCCCChhhhc---cC---C-------HHHHHHHHHhhcCCCCeEEEEeC--CCHHHHHHHHHhhhCCCCCCCCCC-
Q 012528 228 AN--PLLAPESAIN---RL---N-------STLLEEFVAENYTGPRMVLAASG--VEHDQLVSVAEPLLSDLPSIHPRE- 289 (461)
Q Consensus 228 ~~--~~~~~~~~l~---~i---t-------~~~l~~f~~~~~~~~~~~l~ivG--v~~~~l~~li~~~~~~lp~~~~~~- 289 (461)
++ ..++-.+.++ ++ . .+.|.++.+.+...++|.+.|.. ..+..+++.+++++..+|...+..
T Consensus 720 g~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~ 799 (998)
T KOG2019|consen 720 GWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGS 799 (998)
T ss_pred cchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCC
Confidence 11 1112212111 11 1 24566777667788999999888 899999999999999888433221
Q ss_pred C--CCCCC-CCCc-eEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhh
Q 012528 290 E--PKSVY-TGGD-YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNE 365 (461)
Q Consensus 290 ~--~~~~~-~~~~-~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~ 365 (461)
. ..+.. .+.. .++..+. -+..++.-+..+.+ +.++|-..+.|+..+|.. ..|+.+||++
T Consensus 800 ~st~d~r~p~~~~~i~~~~P~-fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~--------------k~Lh~evRek 862 (998)
T KOG2019|consen 800 KSTWDARLPLRSEAIRVVIPT-FQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTN--------------KWLHDEVREK 862 (998)
T ss_pred ccCccccCCCCceeEEEeccc-cchhhhhhhccccc--CCCCCCcHHHHHHHHHHH--------------HHHHHHHHHh
Confidence 1 11211 1222 2223332 12344544555555 789999999999999985 8999999998
Q ss_pred CCCeEEEEeeccccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 012528 366 FPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAIL 433 (461)
Q Consensus 366 ~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~ 433 (461)
. .+|+.++.++.. .|.|.++..-+|+ ..+.++.+...-+-++.. .+++++|++||-.++++..
T Consensus 863 G-GAYGgg~s~~sh--~GvfSf~SYRDpn-~lktL~~f~~tgd~~~~~-~~~~~dldeAkl~~f~~VD 925 (998)
T KOG2019|consen 863 G-GAYGGGCSYSSH--SGVFSFYSYRDPN-PLKTLDIFDGTGDFLRGL-DVDQQDLDEAKLGTFGDVD 925 (998)
T ss_pred c-CccCCccccccc--cceEEEEeccCCc-hhhHHHhhcchhhhhhcC-Cccccchhhhhhhhccccc
Confidence 4 489988877654 6788888777776 446666666555555543 4999999999998877653
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.9e-08 Score=99.32 Aligned_cols=323 Identities=13% Similarity=0.127 Sum_probs=202.0
Q ss_pred ecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhc------CCCCC----CCHHHHHHHHHHcCCeeeEEe-----cc
Q 012528 93 ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAF------RSTRN----RSHLRIVREVEAIGGNVQASA-----SR 157 (461)
Q Consensus 93 ~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~------~gt~~----~s~~~l~~~l~~~g~~~~~~~-----~~ 157 (461)
.+-++..+.+..+++...+.- .....-.+...+++ .|+-+ .+..++.+.+....++.+..+ -+
T Consensus 556 ~h~ps~Fvel~fl~dss~i~~--sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~G~~~ 633 (1022)
T KOG0961|consen 556 HHCPSKFVELFFLLDSSNISI--SLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYD 633 (1022)
T ss_pred ccCchHHHhHhhhhccccCch--hhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccccccch
Confidence 333445666666666655542 22223333333333 45544 355666666655544433333 35
Q ss_pred eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCC--CCCC
Q 012528 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP--LLAP 234 (461)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~--~~~~ 234 (461)
+-+.+.+++..++.+..++++..++....|+++.+....+++..++..++.|...++.......+| .+.+... .+-.
T Consensus 634 ~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L~~ 713 (1022)
T KOG0961|consen 634 RLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDELVL 713 (1022)
T ss_pred hheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHHHH
Confidence 778999999999999999999999999999999999999999999999999999999999999998 5544332 2222
Q ss_pred hhhhccCC----------HHHHHHHHHhhcCCCCeEEEEeC-CC-HHHHHHHHHhhhCCCCCCCCCCC---------CCC
Q 012528 235 ESAINRLN----------STLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPSIHPREE---------PKS 293 (461)
Q Consensus 235 ~~~l~~it----------~~~l~~f~~~~~~~~~~~l~ivG-v~-~~~l~~li~~~~~~lp~~~~~~~---------~~~ 293 (461)
++-++.|. .+.++...+-...-+.+.+.++| ++ .+....-...++++..-..+... ..+
T Consensus 714 Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~nP~~~f~~tf~~~~~~s 793 (1022)
T KOG0961|consen 714 EKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADPRFGNPGHQFSATFEAGENVS 793 (1022)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCcccCCchhhcccccccCcccc
Confidence 23333332 12222222212234778888899 64 22222223333333211111111 111
Q ss_pred C-CCCCceEEecC-CCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEE
Q 012528 294 V-YTGGDYRCQAD-SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQS 371 (461)
Q Consensus 294 ~-~~~~~~~~~~~-~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~ 371 (461)
. +..+...+... +..+.+.+....++...| .+++.+...++.++|+. |..++|..||.. |++|+
T Consensus 794 ~e~gsssk~~~I~~p~sESs~l~~sip~~~~w-~dpel~~~~l~~~YL~~------------~eGPfW~~IRG~-GLAYG 859 (1022)
T KOG0961|consen 794 LELGSSSKELLIGVPGSESSFLYQSIPLDANW-NDPELIPAMLFGQYLSQ------------CEGPFWRAIRGD-GLAYG 859 (1022)
T ss_pred eeccCCcceeEecCCCccccceeeeccccccc-CCcchhHHHHHHHHHHh------------cccchhhhhccc-chhcc
Confidence 1 11222222222 222445454444444455 78899999999999986 558899999976 99999
Q ss_pred EEeeccccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHH
Q 012528 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT-PGEVDQVQLDRAKQSTKSAILM 434 (461)
Q Consensus 372 ~~a~~~~~~~~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~-~g~~s~~el~~ak~~~~~~~~~ 434 (461)
++.+...-.+...+.||...+|.++-+ .-.+.++++.. .|++++.+++-||......+..
T Consensus 860 anm~~~~d~~~~~~~iyr~ad~~kaye---~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~ 920 (1022)
T KOG0961|consen 860 ANMFVKPDRKQITLSIYRCADPAKAYE---RTRDIVRKIVSGSGEISKAEFEGAKRSTVFEMMK 920 (1022)
T ss_pred ceeEEeccCCEEEEEeecCCcHHHHHH---HHHHHHHHHhcCceeecHHHhccchHHHHHHHHH
Confidence 998877666666677777777665444 44444555555 3569999999999999887754
No 22
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.46 E-value=3.9e-06 Score=78.94 Aligned_cols=134 Identities=21% Similarity=0.234 Sum_probs=88.1
Q ss_pred CCCCCCCCCCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 012528 67 PPSLPDYVEPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE 145 (461)
Q Consensus 67 ~~~~~~~~~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~ 145 (461)
...++...+..++.+..+ +|++|+..+.+ +..+++.++++.+.... ....-++-|..-+...||++++..++...+.
T Consensus 59 ~~Di~~~~~~~~~~~~~~-~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~-e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~ 136 (248)
T PF08367_consen 59 LSDIPREIEKIPLEVEKL-GGIPVLFHEQPTNGIVYVRLYFDLSDLPE-EDLPYLPLLTDLLGELGTKNYSYEELSNEID 136 (248)
T ss_dssp GGGS-SS------EECCC-TTCEEEEEE---TTEEEEEEEEE-TTS-C-CCHCCHHHHHHHCCCS-BSSS-HHHHHHHHH
T ss_pred HHhcCCCCCCCCceeeec-CCccEEEEEcCCCCeEEEEEEecCCCCCH-HHHHhHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 334455555555555554 68999966555 55999999999996665 3445555555544566999999999999999
Q ss_pred HcCCeeeEEec-----------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHH
Q 012528 146 AIGGNVQASAS-----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSE 202 (461)
Q Consensus 146 ~~g~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~e 202 (461)
.+.|++++++. .-.+.++++|+.++++++++++.+++.++.|++.+ +.......+..
T Consensus 137 ~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~ 205 (248)
T PF08367_consen 137 LYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELKSD 205 (248)
T ss_dssp HHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHH
T ss_pred HhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 99887777652 23578999999999999999999999999998654 33333333333
No 23
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.29 E-value=3.1e-05 Score=75.82 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=115.5
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecceeEE
Q 012528 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (461)
Q Consensus 82 ~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (461)
.+|+||+||+..+.-...+++++. +-|.-.+-.+-.|+||||||++- .+++..+ ..||++.|.+++
T Consensus 2 IvL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILI----sFD~~~F---------~ANASTaRsYMS 67 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------LANASTARSYMS 67 (590)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------hcccchhhhhhh
Confidence 479999999998888888888875 45666666788899999999974 3444332 368899999999
Q ss_pred EEEEccCCC-HHHHHHHHHHhhhC-----CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCCCCCCC
Q 012528 162 YSFDALKTY-VPEMVELLIDCVRN-----PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLLA 233 (461)
Q Consensus 162 ~~~~~~~~~-l~~~l~ll~~~~~~-----p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~--~~p~~~~~~~ 233 (461)
|.+.+.... -.+++.-+..++.. -.|+...++...+.+..|.-- .|- +...+.-..| ++.+-+ .|
T Consensus 68 FWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYYF--RnE---vfHCmDvLtfL~gGDLYN--GG 140 (590)
T PF03410_consen 68 FWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYYF--RNE---VFHCMDVLTFLGGGDLYN--GG 140 (590)
T ss_pred hhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhhh--hhh---HHHHHHHHHHhcCCcccC--Cc
Confidence 999888764 34555555555533 235555555544444444321 121 2333333444 333322 24
Q ss_pred ChhhhccCCHHHHHHHHHh---hcCCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCCC
Q 012528 234 PESAINRLNSTLLEEFVAE---NYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPRE 289 (461)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~---~~~~~~~~l~ivGv~~~~l~~li~~~~~~lp~~~~~~ 289 (461)
....|+++ +++.+.... ....+|+++++--++ +.+..++++.||.+|.-+...
T Consensus 141 Ri~ML~~l--~~i~~mL~~RM~~I~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~~I 196 (590)
T PF03410_consen 141 RIDMLNNL--NDIRNMLSNRMHRIIGPNIVIFVKELN-PNILSLLSNTFGTLPSCPLTI 196 (590)
T ss_pred hHHHHhhh--HHHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcccc
Confidence 55556555 333333322 234566666555588 567889999999999876533
No 24
>PHA03081 putative metalloprotease; Provisional
Probab=98.12 E-value=0.0001 Score=72.45 Aligned_cols=183 Identities=17% Similarity=0.273 Sum_probs=115.6
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecceeEE
Q 012528 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (461)
Q Consensus 82 ~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (461)
.+|+||+||+..+.-...+++++. +.|.-.+-.+-.|++||+||++- .+++..+ ..++++.+.+++
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili----~fd~~~f---------~anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------VANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------cccchhhhhhHh
Confidence 479999999998888888888864 45666666678899999999974 3333322 367889999999
Q ss_pred EEEEccCCC-HHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCCCCCCC
Q 012528 162 YSFDALKTY-VPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLLA 233 (461)
Q Consensus 162 ~~~~~~~~~-l~~~l~ll~~~~~~p~-----f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~--~~p~~~~~~~ 233 (461)
|.+.+.... ..+++.-+..++..+. |+.-.++...+.+..|.- ..|- +...+.-..| ++-+-+ .|
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYY--FRnE---vfHCmDvLTfL~gGDLYN--GG 140 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYY--FRNE---VFHCMDVLTFLGGGDLYN--GG 140 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhh--hhhh---hHHHHHHHHHhcCCcccC--Cc
Confidence 998877754 3677787777777665 333333333333333321 1121 2233333444 333322 24
Q ss_pred ChhhhccCCHHHHHHHHHhh---cCCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCC
Q 012528 234 PESAINRLNSTLLEEFVAEN---YTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR 288 (461)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~---~~~~~~~l~ivGv~~~~l~~li~~~~~~lp~~~~~ 288 (461)
....|+++ +++++...+. ...+|+++++--++ +.+..++++.||.+|.-+..
T Consensus 141 Ri~ML~~l--~~i~~~L~~RM~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~~ 195 (595)
T PHA03081 141 RIDMLDNL--NDVRDMLSNRMHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPET 195 (595)
T ss_pred hHHHHhhh--HHHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCccc
Confidence 55666555 3444433332 34566666555588 56788999999999987643
No 25
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=96.74 E-value=0.12 Score=44.18 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=88.7
Q ss_pred cCCCCCceEEEEEeecCCCCCCCc-h-hHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCC
Q 012528 304 ADSGDQLTHFVLAFELPGGWHKDK-D-AMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNH 381 (461)
Q Consensus 304 ~~~~~~~~~v~l~~~~~~~~~~~~-d-~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~ 381 (461)
.+...+...+.+.|.+.. ..++ + .-...++..++..|+ +++.+.-+.+..+..|..+++.+..
T Consensus 6 ~~~~~~~~~~~l~~~~Gs--~~e~~~~~G~a~ll~~l~~~gs--------~~~~~~~l~~~l~~~G~~~~~~t~~----- 70 (149)
T PF00675_consen 6 EDPGSPVVSVSLVFKAGS--RYEPPGKPGLAHLLEHLLFRGS--------KKYSSDELQEELESLGASFNASTSR----- 70 (149)
T ss_dssp ESTTSSEEEEEEEES-SG--GGSCTTTTTHHHHHHHHTTSBB--------SSSBHHHHHHHHHHTTCEEEEEEES-----
T ss_pred EcCCCCEEEEEEEEeecc--CCCCCCCCchhhhhhhhccccc--------chhhhhhhHHHhhhhccccceEecc-----
Confidence 333336777778876654 3332 2 356677777776442 2233433445556678777665442
Q ss_pred cceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcc
Q 012528 382 SGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456 (461)
Q Consensus 382 ~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~ 456 (461)
-...+++.+.+++..++++.+.+.+..- .++++++++.|..++..+....+++...+.+........+.+
T Consensus 71 -d~t~~~~~~~~~~~~~~l~~l~~~~~~P----~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p 140 (149)
T PF00675_consen 71 -DSTSYSASVLSEDLEKALELLADMLFNP----SFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHP 140 (149)
T ss_dssp -SEEEEEEEEEGGGHHHHHHHHHHHHHSB----GGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSG
T ss_pred -cceEEEEEEecccchhHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCC
Confidence 2356778888889999888888776554 399999999999999999988888766766666666655443
No 26
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.19 Score=49.13 Aligned_cols=162 Identities=15% Similarity=0.064 Sum_probs=104.7
Q ss_pred eEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCH--------HHH-------HHHHHHcCCeeeEEecceeEEEE
Q 012528 99 VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH--------LRI-------VREVEAIGGNVQASASREQMGYS 163 (461)
Q Consensus 99 ~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~--------~~l-------~~~l~~~g~~~~~~~~~~~~~~~ 163 (461)
..++.+.+.+-+..+. +. ++.-+-.|+..|.+.+|. .++ ..+++...+--..+.+.--+++.
T Consensus 264 ltHv~lg~Eg~~~~de--D~-v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~ 340 (472)
T KOG2067|consen 264 LTHVVLGFEGCSWNDE--DF-VALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIY 340 (472)
T ss_pred eeeeeEeeccCCCCCh--hH-HHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEe
Confidence 5666777766666654 22 233333445455555553 222 22344444555556677788999
Q ss_pred EEccCCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccC
Q 012528 164 FDALKTYVPEMVELLIDCVRNP--VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRL 241 (461)
Q Consensus 164 ~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~i 241 (461)
++++++...++++++..-+.+- ..+++++++.|.+++..+-+....-.-.+.+.-++++-.+ ...++..-.+.|+++
T Consensus 341 ~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g-~rk~p~e~~~~Ie~l 419 (472)
T KOG2067|consen 341 ASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTG-ERKPPDEFIKKIEQL 419 (472)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhcc-CcCCHHHHHHHHHhc
Confidence 9999999999999998766543 3789999999999999988654444445556666665321 112222233778899
Q ss_pred CHHHHHHHHHhhcCCCCeEEEEeC
Q 012528 242 NSTLLEEFVAENYTGPRMVLAASG 265 (461)
Q Consensus 242 t~~~l~~f~~~~~~~~~~~l~ivG 265 (461)
+.+|+..+-.+.++ ++.+++..|
T Consensus 420 t~~DI~rva~kvlt-~~p~va~~G 442 (472)
T KOG2067|consen 420 TPSDISRVASKVLT-GKPSVAAFG 442 (472)
T ss_pred CHHHHHHHHHHHhc-CCceeccCC
Confidence 99999999998875 455555555
No 27
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.32 Score=47.46 Aligned_cols=177 Identities=13% Similarity=0.148 Sum_probs=114.0
Q ss_pred CcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhh-----cCCCCCCCHHHHHHHHHHcCC-----eeeE-Ee
Q 012528 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMA-----FRSTRNRSHLRIVREVEAIGG-----NVQA-SA 155 (461)
Q Consensus 87 Gl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~-----~~gt~~~s~~~l~~~l~~~g~-----~~~~-~~ 155 (461)
|-.|-..+.+-|.+++.+.+.+-+-..|+ +-...+...++ +.|++......|.+.+....+ .+|. +.
T Consensus 258 gsEvR~rdd~lP~a~~AiAVEG~~w~~pD--~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~Yk 335 (467)
T KOG0960|consen 258 GSEVRVRDDDLPLAHIAIAVEGVSWAHPD--YFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYK 335 (467)
T ss_pred CceeeecCCCCchhheeeeEecCCcCCcc--HHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhcccc
Confidence 66777888888999999999888777653 22222233332 235555555566665544322 1221 12
Q ss_pred cceeEEEEEEc-cCCCHHHHHHHHHH-hhh-CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012528 156 SREQMGYSFDA-LKTYVPEMVELLID-CVR-NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (461)
Q Consensus 156 ~~~~~~~~~~~-~~~~l~~~l~ll~~-~~~-~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~ 231 (461)
+.--.++++-| ....++.++..+.. +.+ ....++.|+++.|..++..+-...+..-....+.-.+.+. +.. .|+
T Consensus 336 DTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grr--i~l 413 (467)
T KOG0960|consen 336 DTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRR--IPL 413 (467)
T ss_pred cccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCc--CCh
Confidence 23334555555 55667776665433 221 1268999999999999999886654444445666666665 332 222
Q ss_pred CCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CC
Q 012528 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (461)
Q Consensus 232 ~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~ 267 (461)
-.-...|+.|+.++++++..+++-...+.++++| ++
T Consensus 414 ~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 414 AELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 2234679999999999999999988899999999 64
No 28
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=95.05 E-value=0.25 Score=53.18 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=63.4
Q ss_pred CceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEE
Q 012528 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (461)
Q Consensus 309 ~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~ 388 (461)
..+.+.+-.+.|. .+..+.+++.+|..++. .++|++||-+.+++|.|++.+....+...+.+-
T Consensus 614 ~e~alllf~p~~~--~~~~~~aa~rlla~l~~---------------~~f~qrlRve~qlGY~v~~~~~~~~~~~gllf~ 676 (696)
T TIGR02110 614 GEQALLLFCPLPT--ADVASEAAWRLLAQLLE---------------PPFFQRLRVELQLGYVVFCRYRRVADRDGLLFA 676 (696)
T ss_pred CCcEEEEEecCCC--CCHHHHHHHHHHHHHhc---------------hhHHHHHHHhhccceEEEEeeEEcCCcceeEEE
Confidence 4555556667776 67788999999999999 899999999999999999999877766566677
Q ss_pred EEeCcccHHHHHHHHHH
Q 012528 389 GTTGSDFVSKAIDLAAR 405 (461)
Q Consensus 389 ~~~~p~~~~~~i~~~~~ 405 (461)
++++.-...++.+.+..
T Consensus 677 ~QSP~~~~~~l~~h~~~ 693 (696)
T TIGR02110 677 LQSPDASARELLQHIKR 693 (696)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 77876666666665544
No 29
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=94.41 E-value=1.8 Score=44.35 Aligned_cols=129 Identities=14% Similarity=0.098 Sum_probs=83.3
Q ss_pred HHHHHHH-HHcCCeeeEEe--c----ceeEEEEEEccCCC---HHHHHH-HHHHhhhCC--CCCHHHHHHHHHHHHHHHH
Q 012528 138 LRIVREV-EAIGGNVQASA--S----REQMGYSFDALKTY---VPEMVE-LLIDCVRNP--VFLDWEVNEQLTKVKSEIS 204 (461)
Q Consensus 138 ~~l~~~l-~~~g~~~~~~~--~----~~~~~~~~~~~~~~---l~~~l~-ll~~~~~~p--~f~~~~~~~~k~~~~~el~ 204 (461)
..+...+ +..|..++++. + .....+...+..++ ..+.++ .+....... .+++++++..+..+...+-
T Consensus 290 SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~ 369 (438)
T COG0612 290 SRLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLL 369 (438)
T ss_pred hHHHHHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhh
Confidence 3555554 44577666653 1 12233444444333 333333 223333333 2889999999999999888
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CC
Q 012528 205 EVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (461)
Q Consensus 205 ~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~ 267 (461)
...++|...+........++.+.. ....-.+.|+.++.+++.++.++++.+.+++++++| ..
T Consensus 370 ~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 370 LSLDSPSSIAELLGQYLLLGGSLI-TLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred hccCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccc
Confidence 888888887766666655422221 222345889999999999999999999999999999 55
No 30
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=88.12 E-value=4.3 Score=35.02 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=66.3
Q ss_pred CcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHH-HcCCe--eeEEec----cee
Q 012528 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGN--VQASAS----REQ 159 (461)
Q Consensus 87 Gl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~-~~g~~--~~~~~~----~~~ 159 (461)
+-.+.....+.+...+.+.+.+..... ........++..++..+ ....+...+. ..|.. ++++.. ...
T Consensus 67 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~l~~~l~~~----~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~ 141 (184)
T PF05193_consen 67 GKEIVIPSKDESQSIVSIAFPGPPIKD-SKDYFALNLLSSLLGNG----MSSRLFQELREKQGLAYSVSASNSSYRDSGL 141 (184)
T ss_dssp EEEEEEEESSSSSEEEEEEEEEEETGT-STTHHHHHHHHHHHHCS----TTSHHHHHHHTTTTSESEEEEEEEEESSEEE
T ss_pred ccccccccccccccccccccccccccc-cchhhHHHHHHHHHhcC----ccchhHHHHHhccccceEEEeeeeccccceE
Confidence 444454444446666666666665522 24556777888888654 3345666666 55543 333322 244
Q ss_pred EEEEEEccCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 012528 160 MGYSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKV 199 (461)
Q Consensus 160 ~~~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~ 199 (461)
+.+.+.+.++++.++++.+.+.+.. -.|++++|++.|+.+
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 142 FSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 6777788888888887777666543 248999999998764
No 31
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=82.03 E-value=1.9 Score=25.98 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHH
Q 012528 404 ARELISVATPGEVDQVQLDRAKQSTK 429 (461)
Q Consensus 404 ~~~l~~l~~~g~~s~~el~~ak~~~~ 429 (461)
.+.+..+...|.+|++|+++.|+.++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45567777778899999999999875
No 32
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=65.48 E-value=1.2e+02 Score=28.30 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=70.9
Q ss_pred CceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCC-CeEEEEeeccc---cCCcce
Q 012528 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFP-QVQSFSAFSNI---YNHSGM 384 (461)
Q Consensus 309 ~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g-~~Y~~~a~~~~---~~~~~~ 384 (461)
.-+++.+.|..+. ...++...+.++..+|+.-|. ... =+.-|-..+...-| ...++.+.... ..-...
T Consensus 90 GI~Y~~l~fdl~~--l~~e~l~yl~Ll~~ll~~lgT-----~~~-sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~ 161 (248)
T PF08367_consen 90 GIVYVRLYFDLSD--LPEEDLPYLPLLTDLLGELGT-----KNY-SYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPY 161 (248)
T ss_dssp TEEEEEEEEE-TT--S-CCCHCCHHHHHHHCCCS-B-----SSS--HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEE
T ss_pred CeEEEEEEecCCC--CCHHHHHhHHHHHHHHHhCCC-----CCC-CHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEE
Confidence 6789999999987 677888889999999986532 111 12233333333334 22333333222 122356
Q ss_pred EEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHHHHhcCC
Q 012528 385 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQV-QLDRAKQSTKSAILMNLES 438 (461)
Q Consensus 385 ~~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~-el~~ak~~~~~~~~~~~~s 438 (461)
|.+.+.|-.++++++++.+.+.+.+. .+++. .+.....+.++.+..++.+
T Consensus 162 l~is~k~L~~~~~~~~~ll~eil~~~----~f~d~~rl~~ll~~~~s~~~~~i~~ 212 (248)
T PF08367_consen 162 LVISAKCLDEKLDEAFELLSEILTET----DFDDKERLKELLKELKSDMESSIIS 212 (248)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCB-----TT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeHhhhHHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 77788888999999999988887664 26654 5555666666666555433
No 33
>COG5023 Tubulin [Cytoskeleton]
Probab=40.24 E-value=1.2e+02 Score=30.01 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=56.7
Q ss_pred CCCCCCCCcccHhHHHHHhhCC----CeEEEEeecc-------ccCCcceEEEEEEeC---cccHHHHHHHHHHHH-HHh
Q 012528 346 SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAFSN-------IYNHSGMFGIQGTTG---SDFVSKAIDLAAREL-ISV 410 (461)
Q Consensus 346 s~ggpgkg~~srL~~~lRe~~g----~~Y~~~a~~~-------~~~~~~~~~i~~~~~---p~~~~~~i~~~~~~l-~~l 410 (461)
=+||-|.||.+-|.++||++++ +.|+|.-... +|+. .+.++...+ .-.+.+ -+.+.+.. +.+
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNs--vLt~h~l~ensD~tf~~D-Neal~di~~~~L 215 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNS--VLTLHRLLENSDCTFVVD-NEALYDICRRNL 215 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHH--HHHHHHHHhcCCceEEec-hHHHHHHHHHhc
Confidence 3688999999999999999886 5566543210 1211 011110000 000000 01122222 344
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 012528 411 ATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDI 446 (461)
Q Consensus 411 ~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i 446 (461)
..+ .++=.++++.+.++.+....++.=+.++-.++
T Consensus 216 ~i~-~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl 250 (443)
T COG5023 216 RIQ-NPSYDDLNQLISTVMSSVTTSLRFPGYLNVDL 250 (443)
T ss_pred CCC-CCChHHHHHHHHHHHHhhhheeecCccccchH
Confidence 444 48999999999999999998887777665555
No 34
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=30.35 E-value=52 Score=28.80 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=33.1
Q ss_pred hhhccCCHHHHHHHHHhhc-CCCCeEEEEeC-CCHHHHHHHHHh
Q 012528 236 SAINRLNSTLLEEFVAENY-TGPRMVLAASG-VEHDQLVSVAEP 277 (461)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~-~~~~~~l~ivG-v~~~~l~~li~~ 277 (461)
=.|++.+.+++++..+..- .+.++.+.++| ++.+.+.++++.
T Consensus 104 I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 104 IMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred EEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 4468889999999988543 45679999999 999999888754
No 35
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=28.62 E-value=1.8e+02 Score=19.39 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCeeeEEecceeEEEEEEccCCCHHHHHHHHHHhh
Q 012528 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (461)
Q Consensus 137 ~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~ 182 (461)
...+.+.++..++.+.-....+...+.+..+.++.+.+.+.|.+..
T Consensus 8 ~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 8 YGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp HHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 3457888999999987777777799999999999999999888764
No 36
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=27.74 E-value=1.9e+02 Score=21.73 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 012528 403 AARELISVATPGEVDQVQLDRAKQSTKSAILM 434 (461)
Q Consensus 403 ~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~ 434 (461)
-..++......|.+|++++++....++..+..
T Consensus 36 ~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 36 ELAELQEALEAGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33444555556789999999999999888754
No 37
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=24.46 E-value=61 Score=31.99 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=62.3
Q ss_pred HHHHHHHhhCCCCCC--------CCCCCCCCcccHhHHHHHhhCC----CeEEEEeeccccCCcceEEEEEE--------
Q 012528 331 TLTVLQMLLGGGGSF--------SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAFSNIYNHSGMFGIQGT-------- 390 (461)
Q Consensus 331 ~~~vl~~lL~~~~~f--------s~ggpgkg~~srL~~~lRe~~g----~~Y~~~a~~~~~~~~~~~~i~~~-------- 390 (461)
.+.++..=..+..+| -|||-|.||.+-|.++|++++. ..|+|...... .+-..++=.
T Consensus 118 ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~---ssdVVVQpYNsiLtL~r 194 (448)
T KOG1374|consen 118 IMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDE---SSDVVVQPYNSILTLKR 194 (448)
T ss_pred HHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCC---ccceEEecchHHHHHHH
Confidence 455666666677777 4899999999999999999874 46776543311 111111100
Q ss_pred --eCcccH----HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 012528 391 --TGSDFV----SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIG 447 (461)
Q Consensus 391 --~~p~~~----~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~ 447 (461)
-+++.+ -.++..+....-++. .+|=.+++.......+.-...+..+.+....+.
T Consensus 195 L~~nsD~vVVlDN~AL~ria~~~l~i~---~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~ 254 (448)
T KOG1374|consen 195 LTENSDCVVVLDNTALHRIAADRLHIQ---NPTFSQINQLVSTIMSASTTTLRYPGYMNNDLI 254 (448)
T ss_pred HhhCCCeEEEeccHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhhccccccchhhccCcHH
Confidence 011111 122333333322332 377677777776666666666666666555554
No 38
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=23.49 E-value=2.1e+02 Score=19.70 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeeeEEe-cceeEEEEEEccCCCHHHHHHHHHHhhh
Q 012528 138 LRIVREVEAIGGNVQASA-SREQMGYSFDALKTYVPEMVELLIDCVR 183 (461)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ll~~~~~ 183 (461)
.++.+.+...|.++..-. +.....+++....++.+.+++.|++.+.
T Consensus 19 ~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 19 ATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 345666778888775443 2244778888888899999999988775
No 39
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=23.13 E-value=1.7e+02 Score=27.86 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=37.2
Q ss_pred ChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHh
Q 012528 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (461)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~ 277 (461)
+.=.|++++++++++..+..-.+++..+-++| ++.+.+...++.
T Consensus 210 DiImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 210 DIIMLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred CEEEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 33457899999999999887667899999999 999998887754
No 40
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.90 E-value=2.5e+02 Score=19.25 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCeeeEEe-cceeEEEEEEccCCCHHHHHHHHHHhhhC
Q 012528 139 RIVREVEAIGGNVQASA-SREQMGYSFDALKTYVPEMVELLIDCVRN 184 (461)
Q Consensus 139 ~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ll~~~~~~ 184 (461)
++...+...|.++.... +.....+++....++.+.+++.+++.+.+
T Consensus 20 ~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 20 RATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 45566777777765443 22347778888889999999999887753
No 41
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=20.61 E-value=3.2e+02 Score=24.40 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=45.2
Q ss_pred HHHHhhCCCeEEEEeeccc---------cCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 012528 360 RRVLNEFPQVQSFSAFSNI---------YNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKS 430 (461)
Q Consensus 360 ~~lRe~~g~~Y~~~a~~~~---------~~~~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~ 430 (461)
.++|+-+.+.|+.+-.+.. +.+...|-+.-+.+....+.+...+.+.=..+... ++-...|+.-|..+..
T Consensus 41 tElRTtyNGsYGASLlF~~~eltYYVALfq~k~fWRViKt~d~~~AE~~Y~~F~~Qt~~LA~~-eirR~~LeAQka~~eR 119 (192)
T PF11180_consen 41 TELRTTYNGSYGASLLFYPKELTYYVALFQQKAFWRVIKTQDEARAEAIYRDFAQQTARLADV-EIRRAQLEAQKAQLER 119 (192)
T ss_pred hhhhhhccCCccceeeecCCcceeeeeeeecCceeEeeecCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5999999999998865532 23445666666666666666667776665555442 1444444444554444
Q ss_pred HHHHh
Q 012528 431 AILMN 435 (461)
Q Consensus 431 ~~~~~ 435 (461)
.+..+
T Consensus 120 ~ia~~ 124 (192)
T PF11180_consen 120 LIAES 124 (192)
T ss_pred HHHHH
Confidence 44443
Done!