Query 012528
Match_columns 461
No_of_seqs 243 out of 1584
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 11:11:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 9.6E-59 3.3E-63 477.7 47.7 379 77-458 4-391 (475)
2 3eoq_A Putative zinc protease; 100.0 1.6E-54 5.6E-59 437.2 44.3 363 79-458 2-368 (406)
3 3hdi_A Processing protease; CA 100.0 2.1E-53 7.1E-58 431.0 44.8 363 79-458 2-368 (421)
4 1hr6_B Beta-MPP, mitochondrial 100.0 9.3E-53 3.2E-57 428.9 46.3 377 76-458 4-391 (443)
5 1pp9_A Ubiquinol-cytochrome C 100.0 8E-53 2.7E-57 430.0 42.7 374 77-458 12-391 (446)
6 1pp9_B Ubiquinol-cytochrome C 100.0 1.7E-51 5.7E-56 418.9 49.3 374 75-457 20-393 (439)
7 3ami_A Zinc peptidase; alpha/b 100.0 8E-52 2.7E-56 422.5 42.3 364 77-454 5-381 (445)
8 3gwb_A Peptidase M16 inactive 100.0 3.8E-50 1.3E-54 408.3 40.7 364 77-457 12-382 (434)
9 3amj_B Zinc peptidase inactive 100.0 2.2E-49 7.7E-54 401.5 42.7 365 77-459 2-377 (424)
10 3cx5_A Cytochrome B-C1 complex 100.0 1.2E-48 4.2E-53 396.6 39.1 363 80-458 2-376 (431)
11 3d3y_A Uncharacterized protein 100.0 5.7E-45 1.9E-49 368.8 40.5 356 82-457 6-386 (425)
12 1q2l_A Protease III; hydrolase 100.0 1.2E-44 4.2E-49 402.0 40.4 365 73-451 15-397 (939)
13 3go9_A Insulinase family prote 100.0 1.8E-43 6E-48 364.9 32.1 350 77-453 24-402 (492)
14 3cww_A Insulysin, insulin-degr 100.0 1.7E-41 5.8E-46 378.8 39.1 366 72-451 28-413 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 4.3E-41 1.5E-45 375.5 32.6 365 77-459 36-439 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 3.9E-40 1.3E-44 365.7 34.9 370 76-460 84-545 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 1.2E-39 4E-44 322.2 28.5 312 88-439 1-316 (352)
18 1q2l_A Protease III; hydrolase 100.0 1.6E-32 5.3E-37 304.8 28.2 375 53-456 476-863 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 3.8E-30 1.3E-34 287.2 29.0 348 77-455 552-933 (995)
20 3cww_A Insulysin, insulin-degr 100.0 6.5E-29 2.2E-33 277.2 31.4 374 54-454 495-886 (990)
21 3s5m_A Falcilysin; M16 metallo 99.9 1E-25 3.6E-30 250.4 18.0 344 85-458 724-1132(1193)
22 3ih6_A Putative zinc protease; 99.8 5.2E-18 1.8E-22 152.8 15.7 132 309-456 23-155 (197)
23 3ih6_A Putative zinc protease; 98.3 1.9E-05 6.6E-10 70.0 15.5 161 97-265 22-192 (197)
24 3eoq_A Putative zinc protease; 98.0 0.00014 4.9E-09 72.0 15.8 159 98-265 234-402 (406)
25 3cx5_A Cytochrome B-C1 complex 97.9 0.0003 1E-08 70.0 16.9 175 89-267 222-414 (431)
26 1hr6_B Beta-MPP, mitochondrial 97.9 0.0008 2.7E-08 67.2 19.7 168 94-265 241-426 (443)
27 3amj_B Zinc peptidase inactive 97.8 0.00061 2.1E-08 67.6 17.5 164 96-265 239-412 (424)
28 3hdi_A Processing protease; CA 97.8 0.00012 4.2E-09 72.8 12.3 164 95-267 230-405 (421)
29 1pp9_A Ubiquinol-cytochrome C 97.8 0.00054 1.8E-08 68.7 16.6 169 94-267 245-429 (446)
30 1hr6_A Alpha-MPP, mitochondria 97.7 0.0016 5.4E-08 65.9 18.9 167 96-266 240-437 (475)
31 3gwb_A Peptidase M16 inactive 97.6 0.00057 2E-08 68.0 13.9 162 97-265 247-419 (434)
32 1pp9_B Ubiquinol-cytochrome C 97.5 0.0038 1.3E-07 62.1 17.4 165 96-265 249-428 (439)
33 3ami_A Zinc peptidase; alpha/b 97.4 0.0018 6.1E-08 64.8 13.7 162 100-267 245-423 (445)
34 3d3y_A Uncharacterized protein 97.2 0.0053 1.8E-07 60.6 14.7 161 96-265 251-420 (425)
35 3go9_A Insulinase family prote 96.6 0.026 8.9E-07 57.3 14.5 162 94-265 261-445 (492)
36 3cx5_B Cytochrome B-C1 complex 93.6 2.3 7.8E-05 40.2 16.3 122 309-451 11-134 (352)
37 1g6u_A Domain swapped dimer; d 38.5 51 0.0017 20.0 3.9 25 401-426 3-27 (48)
38 3lh2_S 4E10_1VI7A_S0_002_N (T8 22.2 1.9E+02 0.0065 20.0 5.5 47 138-184 20-66 (76)
39 1l7b_A DNA ligase; BRCT, autos 20.4 1.2E+02 0.0041 22.3 4.2 65 128-197 14-79 (92)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=9.6e-59 Score=477.68 Aligned_cols=379 Identities=36% Similarity=0.567 Sum_probs=349.3
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEec
Q 012528 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (461)
+.++.++|+||++|++.+.+.+.+++++++++|+++|++...|++||++||+|+||.+++..++.+.++..|+.++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57899999999999988887899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012528 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (461)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (461)
+++++|++++++++++.+|++|.+++.+|.|++++|+++|..+.+|++...++|...+.+.++..+| ++||+++..|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999889999999999999999 999999999999
Q ss_pred hhhccCCHHHHHHHHHhhcCCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCC-CCCCCCCCCCceEEecC----CCCCc
Q 012528 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQL 310 (461)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~li~~~~~~lp~~~~~-~~~~~~~~~~~~~~~~~----~~~~~ 310 (461)
+.|++++.++|++||+++|.|+||+++++|+++++++++++++|+.||....+ ....+.+.++..++... .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865443 22233454554444421 23378
Q ss_pred eEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEE
Q 012528 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (461)
Q Consensus 311 ~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~ 390 (461)
+++.++|.+++ .++++.+++.|++.|||++++||+|||||||++|||++||++.|++|+++++...+.+.|.|.|++.
T Consensus 244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~ 321 (475)
T 1hr6_A 244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS 321 (475)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence 99999999876 5778999999999999999999999999999999999999999999999999888888899999999
Q ss_pred eCcccHHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccC
Q 012528 391 TGSDFVSKAIDLAARELISVAT---PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 391 ~~p~~~~~~i~~~~~~l~~l~~---~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~ 458 (461)
++|+++.++++.+.+++.++++ .| ++++||+++|+.++.++....+++..+++.++++++.+|.+.+
T Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 391 (475)
T 1hr6_A 322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP 391 (475)
T ss_dssp ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999987 66 9999999999999999999999999999999998887887654
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-54 Score=437.16 Aligned_cols=363 Identities=20% Similarity=0.247 Sum_probs=331.4
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecc
Q 012528 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (461)
Q Consensus 79 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (461)
++.++|+||++|++.+.+ .+.+++.+++++|+++|++...|++|+++||+|+||.+++..++.+.++.+|+.+++++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 578999999999976666 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChh
Q 012528 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (461)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~ 236 (461)
++++|++++++++++.+|+++.+++ +|.|++++|+++|..+.+|++...++|...+.+.++..+| +|||+++..|+.+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999 9999999999999
Q ss_pred hhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC-CCCCCCCceEEecCCCCCceEEE
Q 012528 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KSVYTGGDYRCQADSGDQLTHFV 314 (461)
Q Consensus 237 ~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 314 (461)
+|++++.++|++||++||.|+||+++++| +++++++++++++|+.||..+.+... .....++...+..+. .+++++.
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~~~~ 239 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEK-ARALYLV 239 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTT-CSSEEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCC-ccceEEE
Confidence 99999999999999999999999999999 99999999999999999865433221 112223333333332 2689999
Q ss_pred EEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEEeCcc
Q 012528 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 394 (461)
Q Consensus 315 l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~ 394 (461)
++|.+|+ .+++|++++.|++.|||++ +++|||++||+ .|++|+++++...+.+.|.|.+++.++|+
T Consensus 240 ~~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~ 305 (406)
T 3eoq_A 240 ALFPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPA 305 (406)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGG
T ss_pred EEecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcc
Confidence 9999987 6788999999999999976 55999999999 89999999998888889999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccC
Q 012528 395 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 395 ~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~ 458 (461)
+..++++.+.++|++++++| ++++||+++|+.++.++...++++..++..++++++..|...+
T Consensus 306 ~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 368 (406)
T 3eoq_A 306 RKGEVLAVLQEELDRLGREG-VGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLS 368 (406)
T ss_dssp GHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCC
T ss_pred hHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999887 9999999999999999999999999999999999987776654
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.1e-53 Score=430.98 Aligned_cols=363 Identities=26% Similarity=0.401 Sum_probs=332.8
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecc
Q 012528 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (461)
Q Consensus 79 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (461)
++.++|+||++|++.+.+ .+.+++.+++++|+++|++...|++||++||+|+||.+++..++.+.++..|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999976665 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChh
Q 012528 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (461)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~ 236 (461)
++++|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.++..+| +||++++..|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC-CCCCCCCceEEecCCCCCceEEE
Q 012528 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KSVYTGGDYRCQADSGDQLTHFV 314 (461)
Q Consensus 237 ~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 314 (461)
.|++++.++|++||+++|.|+||+++++| ++ ++++++++++|+.||..+.+... .+.+.+.......+. +++++.
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~~v~ 238 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKET--EQAHLC 238 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCC--SEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCC--CceEEE
Confidence 99999999999999999999999999999 99 99999999999999876543322 233333333333444 799999
Q ss_pred EEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEEeCcc
Q 012528 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 394 (461)
Q Consensus 315 l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~ 394 (461)
++|.+++ .++++.+++.|++.+||++ +++|||++||++.|++|+++++...+.+.|.|.+++.++|+
T Consensus 239 ~~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~ 305 (421)
T 3hdi_A 239 LGYPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHD 305 (421)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGG
T ss_pred EEEecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHH
Confidence 9999986 6889999999999999975 55999999999999999999988888889999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccC
Q 012528 395 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 395 ~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~ 458 (461)
++.++++.+.++++++++.| ++++||+++|+.++.++...++++..++..++++.+..|...+
T Consensus 306 ~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 368 (421)
T 3hdi_A 306 QLDDLVYSIQETTSALAEKG-LTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRS 368 (421)
T ss_dssp GHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999987 9999999999999999999999999999999988887776543
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=9.3e-53 Score=428.93 Aligned_cols=377 Identities=28% Similarity=0.433 Sum_probs=339.6
Q ss_pred CCceEEEEcCCCcEEEEecCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEE
Q 012528 76 PGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (461)
Q Consensus 76 ~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (461)
.+.++.++|+||++|++.+++.+ .+++.+++++|++.|++...|++|+++||+|+||++++..++.+.++.+|++++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAY 83 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 46789999999999998777765 99999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 012528 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (461)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~ 233 (461)
++.++++|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.++..+| +||++++..|
T Consensus 84 t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (443)
T 1hr6_B 84 TSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILG 163 (443)
T ss_dssp ECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred ECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999899
Q ss_pred ChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC------CCCCCCCceEEecCC
Q 012528 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP------KSVYTGGDYRCQADS 306 (461)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~------~~~~~~~~~~~~~~~ 306 (461)
+.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+... .+.+.++...+.. .
T Consensus 164 ~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 242 (443)
T 1hr6_B 164 PIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKE-N 242 (443)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEEC-T
T ss_pred CHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEecc-C
Confidence 99999999999999999999999999999999 99999999999999999865432211 2233333333332 2
Q ss_pred CCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEE
Q 012528 307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (461)
Q Consensus 307 ~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~ 386 (461)
..+++++.++|.+++ .++++.+++.|++.+||++. ...|+|+|+.+||+++||++.|++|+++++...+.+.|.|.
T Consensus 243 ~~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 243 TLPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp TCSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 237899999999986 58899999999999998743 24457888999999999999999999999887777889999
Q ss_pred EEEEeC--cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccC
Q 012528 387 IQGTTG--SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 387 i~~~~~--p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~ 458 (461)
+++.++ |+++.++++.+.++++++++.| ++++||+++|+.++.++...++++..|++.++++++.+|.+.+
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 391 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS 391 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC
Confidence 999999 9999999999999999999876 9999999999999999999999999999999988877787654
No 5
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=8e-53 Score=430.02 Aligned_cols=374 Identities=29% Similarity=0.483 Sum_probs=338.0
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEec
Q 012528 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (461)
+.++..+|+||++|++.+.+++.+++.+++++|++.|++...|++|+++||+|+||.+++..++.+.++.+|+.++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 46789999999999987777889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012528 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (461)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (461)
.++++|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.++..+| +|||+++..|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC--C--CCCCCCCceEEecCCCCCc
Q 012528 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P--KSVYTGGDYRCQADSGDQL 310 (461)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 310 (461)
++|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.. . .+.+.++...+..+ ..++
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHRED-GLPL 250 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEET-TSSS
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecC-Cccc
Confidence 999999999999999999999999999999 9999999999999999986543321 1 22333334433322 2278
Q ss_pred eEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEE
Q 012528 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (461)
Q Consensus 311 ~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~ 390 (461)
+++.++|.+++ .+++|..++.|++.+||++.+ +.| +|+|+++|||++||++ |++|+++++...+.+.|.|.+++.
T Consensus 251 ~~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~~-glay~~~s~~~~~~~~g~~~i~~~ 325 (446)
T 1pp9_A 251 AHVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAATN-KLCQSFQTFNICYADTGLLGAHFV 325 (446)
T ss_dssp EEEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHHH-TCCSEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHhc-CCeEEEEEecccCCCCeEEEEEEE
Confidence 99999999986 578899999999999987544 444 7889999999999964 899999998877778899999999
Q ss_pred eCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccC
Q 012528 391 TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 391 ~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~ 458 (461)
++|++..++++.+.++++++++ | ++++||+++|+.++.++...++++..+++.++++++.+|.+.+
T Consensus 326 ~~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 391 (446)
T 1pp9_A 326 CDHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP 391 (446)
T ss_dssp ECTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC
T ss_pred ECHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999987 7 9999999999999999999999999999999999877887654
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=1.7e-51 Score=418.88 Aligned_cols=374 Identities=30% Similarity=0.500 Sum_probs=339.8
Q ss_pred CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEE
Q 012528 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (461)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (461)
..++++.++|+||++|++.+...+.+++.+++++|+..+++...|++|+++||+|+|+++++..++.+.++..|++++++
T Consensus 20 ~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~ 99 (439)
T 1pp9_B 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVT 99 (439)
T ss_dssp -CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEE
T ss_pred cCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEE
Confidence 45688999999999999766677899999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 012528 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAP 234 (461)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~ 234 (461)
++.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.++..+|.||++++..|+
T Consensus 100 t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 179 (439)
T 1pp9_B 100 STRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCP 179 (439)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCC
T ss_pred ecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999988999999999999999877899998999
Q ss_pred hhhhccCCHHHHHHHHHhhcCCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCceEEecCCCCCceEEE
Q 012528 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 314 (461)
Q Consensus 235 ~~~l~~it~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~li~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 314 (461)
.+.|++++.++|++||+++|.|+||+++++|-++++++++++++|+ ||....+.....++.++...+..+. +++++.
T Consensus 180 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 256 (439)
T 1pp9_B 180 DYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGD--SLVHAA 256 (439)
T ss_dssp GGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCC--SEEEEE
T ss_pred HHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCc--cceEEE
Confidence 9999999999999999999999999999999888999999999998 8765433222233444444444444 789999
Q ss_pred EEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEEeCcc
Q 012528 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 394 (461)
Q Consensus 315 l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~ 394 (461)
++|.+++ .++++.+++.|++.+|++++.|++|| ||.+|||++||++.|++|+++++...+.+.|.|.+++.++|+
T Consensus 257 ~~~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~ 331 (439)
T 1pp9_B 257 LVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAA 331 (439)
T ss_dssp EEEECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGG
T ss_pred EEecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHH
Confidence 9999986 57899999999999999999999888 788999999999999999999988777778999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCccc
Q 012528 395 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERC 457 (461)
Q Consensus 395 ~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~ 457 (461)
++.++++.+.+++.++++.| ++++||+++|+.++.++....+++..+++.++++++..|.+.
T Consensus 332 ~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (439)
T 1pp9_B 332 SAGDVIKAAYNQVKTIAQGN-LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT 393 (439)
T ss_dssp GHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999877 999999999999999999999999999999998888666554
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=8e-52 Score=422.49 Aligned_cols=364 Identities=21% Similarity=0.298 Sum_probs=325.5
Q ss_pred CceEEEEcCCCcEEEEecC-CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEe
Q 012528 77 GKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~-~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (461)
++++.++|+||++|++.+. ..+.+.+.+++++|+..|++...|++|+++||+|+||++++..++.+.++.+|+.+++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 5789999999999996654 467999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-hhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 012528 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (461)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~-~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~ 233 (461)
+.+.++|.+++++++++.+|+++.+++.+|.|++++|+++|..+.+|++ ...++|...+.+.++..+| +|||+++..|
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 6788999999999999999 9999999999
Q ss_pred ChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC--CCCC-CCCCc-eEEecCCCC
Q 012528 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSV-YTGGD-YRCQADSGD 308 (461)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~--~~~~-~~~~~-~~~~~~~~~ 308 (461)
+.++|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.. ...+ ..+.. ..+..+.
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA-- 242 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEEC--
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCC--
Confidence 99999999999999999999999999999999 9999999999999999986543221 1112 22222 2233334
Q ss_pred CceEEEEEeecCCC--CCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccc-cCC-cce
Q 012528 309 QLTHFVLAFELPGG--WHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNH-SGM 384 (461)
Q Consensus 309 ~~~~v~l~~~~~~~--~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~-~~~-~~~ 384 (461)
.++++.++|.+|.. +.++++.+++.+++.|||++ +++||+++||++.|++|++++++.. +.+ .+.
T Consensus 243 ~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~ 311 (445)
T 3ami_A 243 ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGL 311 (445)
T ss_dssp SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEE
T ss_pred CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCe
Confidence 78899999999852 33378999999999999975 5599999999999999999998764 456 899
Q ss_pred EEEEEEeCccc-HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 012528 385 FGIQGTTGSDF-VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG 454 (461)
Q Consensus 385 ~~i~~~~~p~~-~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g 454 (461)
|.|++.+.|+. .+++++.+.++|.++++.| ++++||+++|+.++.++..+.+++..|++.++++++..+
T Consensus 312 ~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (445)
T 3ami_A 312 FILEGVPSKGVTIAQLETDLRAQVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGL 381 (445)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCC
Confidence 99999999884 9999999999999999887 999999999999999999999999999999998877443
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=3.8e-50 Score=408.25 Aligned_cols=364 Identities=17% Similarity=0.181 Sum_probs=328.3
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEe
Q 012528 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (461)
++++.++|+||++|++.+.+ .|.+++.+++++|+..+ +...|++|+++||+++|+++++..++.+.++.+|+++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t 90 (434)
T 3gwb_A 12 LNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGA 90 (434)
T ss_dssp CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeee
Confidence 57899999999999976655 58999999999999999 88999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEccCCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 012528 156 SREQMGYSFDALKTY--VPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 232 (461)
Q Consensus 156 ~~~~~~~~~~~~~~~--l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~ 232 (461)
+.++++|++++++++ ++.+|+++.+++.+|.|++++|+++|+.+.+++++..++|...+.+.++..+| +||++++..
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 170 (434)
T 3gwb_A 91 YKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASD 170 (434)
T ss_dssp CSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTT
T ss_pred cCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999999999998 99999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC--CCCCCCCceEEecCCCCC
Q 012528 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGGDYRCQADSGDQ 309 (461)
Q Consensus 233 ~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~--~~~~~~~~~~~~~~~~~~ 309 (461)
|+.+.|++++.++|++||+++|.|+||+++++| ++++++.++++++|+.||..+.+..+ .....++...+..+. .
T Consensus 171 G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 248 (434)
T 3gwb_A 171 GDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPS--S 248 (434)
T ss_dssp CCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCS--S
T ss_pred CCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCC--C
Confidence 999999999999999999999999999999999 99999999999999999876433322 122333344445555 7
Q ss_pred ceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEE
Q 012528 310 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 389 (461)
Q Consensus 310 ~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~ 389 (461)
++++.++|..+. .++++.+++.|++.|||++ ||++|||++||++.|++|++++++..+.+.+.|.+++
T Consensus 249 ~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~ 316 (434)
T 3gwb_A 249 QTSLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINL 316 (434)
T ss_dssp EEEEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEE
T ss_pred ceeEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEEE
Confidence 899999999886 6889999999999999964 3669999999999999999999988888889999999
Q ss_pred EeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCccc
Q 012528 390 TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERC 457 (461)
Q Consensus 390 ~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~ 457 (461)
.++|+++.++++.+.+++.+++++| ++++||+++|+.++.++....+++..|++.++.+.+ +|.+.
T Consensus 317 ~~~~~~~~~~~~~i~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 382 (434)
T 3gwb_A 317 QTRAEMSEGTLKLVQDVFAEYLKNG-PTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGF-YNLPL 382 (434)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH-TTCCT
T ss_pred ecchhhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH-cCCCc
Confidence 9999999999999999999998877 999999999999999999999999999999997754 55443
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=2.2e-49 Score=401.51 Aligned_cols=365 Identities=18% Similarity=0.258 Sum_probs=327.1
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCC----CCCHHHHHHHHHHcCCee
Q 012528 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----NRSHLRIVREVEAIGGNV 151 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~----~~s~~~l~~~l~~~g~~~ 151 (461)
++++.++|+||++|++.+.+ .|.+++.+++++|+..++++..|++|+++||+|+||+ +++..++.+.++.+|+++
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999976655 6799999999999999999999999999999999999 999999999999999999
Q ss_pred eEEecceeEEEEEEccCCCH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCC
Q 012528 152 QASASREQMGYSFDALKTYV--PEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALA 228 (461)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l--~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~ 228 (461)
+++++.++++|+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.++..+| +||++
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 9999999999999999999999999999999999889999999999999999 99999
Q ss_pred CCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC-CC-CCCCCCceEEecC
Q 012528 229 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PK-SVYTGGDYRCQAD 305 (461)
Q Consensus 229 ~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~-~~-~~~~~~~~~~~~~ 305 (461)
.+. +.++|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.. +. +...+....+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 886 88999999999999999999999999999999 9999999999999999986543322 11 1222223333344
Q ss_pred CCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceE
Q 012528 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 385 (461)
Q Consensus 306 ~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~ 385 (461)
. .++++.++|.++. .++++.+++.|++.|||++ |+++|||++||++.|++|+++++...+.+.+.|
T Consensus 240 ~--~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~ 305 (424)
T 3amj_B 240 A--TQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLF 305 (424)
T ss_dssp S--SEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEE
T ss_pred C--CccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeE
Confidence 4 7899999999876 5788999999999999864 266999999999999999999988877788999
Q ss_pred EEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccCC
Q 012528 386 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCRY 459 (461)
Q Consensus 386 ~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~~ 459 (461)
.+++.++|+++.++++.+.+++.++++.| ++++||+++|+.++.++....+++..|++.++.. ..+|.+.++
T Consensus 306 ~i~~~~~~~~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 377 (424)
T 3amj_B 306 QIGFETRAEKADEAVQVANDTLDAFLREG-PTDAELQAAKDNLINGFALRLDSNAKILGQVAVI-GYYGLPLDY 377 (424)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHH-HHTTCCTTT
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHH-HHcCCChhH
Confidence 99999999999999999999999998877 9999999999999999999999999999999854 446665443
No 10
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.2e-48 Score=396.64 Aligned_cols=363 Identities=18% Similarity=0.292 Sum_probs=322.2
Q ss_pred EEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecce
Q 012528 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 158 (461)
Q Consensus 80 ~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 158 (461)
+.++|+||++|++.+.+ .+.+++.+++++|+..|+++..|++|+++||+++|+.+ ..++..|++++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 46789999999976665 57999999999999999999999999999999998743 34789999999999999
Q ss_pred eEEEEEEccCCCHHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHhc-CCCCCCCCCC
Q 012528 159 QMGYSFDALKTYVPEMVELLIDCVRNPV---FLDWEVNEQLTKVKSEISEVSNNP-QSLLLEAIHSAGY-SGALANPLLA 233 (461)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~---f~~~~~~~~k~~~~~el~~~~~~p-~~~~~~~l~~~~~-~~p~~~~~~~ 233 (461)
+++|++++++++++.+|+++.+++.+|. |++++|+++|+.+.++++...++| ...+.+.++..+| +||++++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999888899 9999999999999 9999999999
Q ss_pred ChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC-CCCCCCCceEEecCCCCCce
Q 012528 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KSVYTGGDYRCQADSGDQLT 311 (461)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 311 (461)
+.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+... ++.+.+....+..+ ..+++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 233 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDD-TLPKA 233 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECT-TSSSE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCC-CCCce
Confidence 99999999999999999999999999999999 99999999999988888865433211 12233333333332 23789
Q ss_pred EEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCC-cccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEE
Q 012528 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG-MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (461)
Q Consensus 312 ~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg-~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~ 390 (461)
++.++|.+++ .++++.+++.|++.||+++ ++||||+| |++||+++||+ .|++|+++++...+.+.|.|.+++.
T Consensus 234 ~v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~i~~~ 307 (431)
T 3cx5_A 234 WISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWGFSTA 307 (431)
T ss_dssp EEEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEEEEEe
Confidence 9999999986 6789999999999999964 46899996 78999999997 5999999998877777899999999
Q ss_pred eCc-ccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHhcCcccC
Q 012528 391 TGS-DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM--NLESRMVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 391 ~~p-~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~--~~~s~~~~~~~i~~~~~~~g~~~~ 458 (461)
++| +++.++++.+.+++.++++ | ++++||+++|+.++.++.. ..+++..+++.++++++.+|.+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 376 (431)
T 3cx5_A 308 TRNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS 376 (431)
T ss_dssp ESCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC
T ss_pred eCchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC
Confidence 999 9999999999999999988 7 9999999999999999999 999999999999988877776543
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=5.7e-45 Score=368.83 Aligned_cols=356 Identities=14% Similarity=0.148 Sum_probs=311.2
Q ss_pred EEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCC-CHHHHHHHHHHc-CCeeeEEecce
Q 012528 82 STLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAI-GGNVQASASRE 158 (461)
Q Consensus 82 ~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 158 (461)
++|+||++|++.+.+ .+.+++.+++++|+..++ .|++|+++||++.|+.++ +..++.+.++.. |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 899999999976664 689999999999997654 699999999999999998 888999999998 99999999988
Q ss_pred e----EEEEEEccCC-------CHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 012528 159 Q----MGYSFDALKT-------YVPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG 222 (461)
Q Consensus 159 ~----~~~~~~~~~~-------~l~~~l~ll~~~~~~p~-----f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~ 222 (461)
. +.|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.++++...++|...+.+.++..+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 8 6999999987 69999999999999999 999999999999999999988999999999999999
Q ss_pred c--CCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC---CCCCC
Q 012528 223 Y--SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP---KSVYT 296 (461)
Q Consensus 223 ~--~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~---~~~~~ 296 (461)
| +||++++..|+.+.|++++.++|++||+++|.|+|++++++| ++++++++++ ++|+ ||....+... ..+..
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999999999999999999999999999999999999999 9999999999 9999 9865432211 11111
Q ss_pred CCceEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeec
Q 012528 297 GGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS 376 (461)
Q Consensus 297 ~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~ 376 (461)
..........+.+++++.++|..|.. .++++.+++.|++.|||++ +++|||++||++.|++|++++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~~~ 308 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDIY-YGDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASSSI 308 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCCC-TTSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEEEE
T ss_pred CcceeEEecCCccccEEEEEeecCCC-CCCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEeccc
Confidence 11222222222379999999998633 4788999999999999875 45999999999999999999876
Q ss_pred cccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcc
Q 012528 377 NIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456 (461)
Q Consensus 377 ~~~~~~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~ 456 (461)
.. ..|.|.|++.++|+++.++++.+.+++..+++.| ++++||+++|+.++.++....+++..|++.++..++.+|.+
T Consensus 309 ~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 385 (425)
T 3d3y_A 309 DT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGK-IRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTM 385 (425)
T ss_dssp ET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSC
T ss_pred cc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCC
Confidence 54 3688999999999999999999999999999877 99999999999999999999999999999999887754665
Q ss_pred c
Q 012528 457 C 457 (461)
Q Consensus 457 ~ 457 (461)
.
T Consensus 386 ~ 386 (425)
T 3d3y_A 386 L 386 (425)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.2e-44 Score=402.03 Aligned_cols=365 Identities=14% Similarity=0.137 Sum_probs=317.9
Q ss_pred CCCCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCC-HHHHHHHHHHcCCe
Q 012528 73 YVEPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGN 150 (461)
Q Consensus 73 ~~~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s-~~~l~~~l~~~g~~ 150 (461)
..++..++..+|+||++|++.+.+ .+.+.+.+++++|+++|+++..|++|++|||+|+||.+++ ..++.+.++.+|+.
T Consensus 15 ~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~ 94 (939)
T 1q2l_A 15 DKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGS 94 (939)
T ss_dssp TTCCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCE
T ss_pred CCCCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCc
Confidence 345556899999999999966554 6799999999999999999999999999999999999987 46999999999999
Q ss_pred eeEEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCC
Q 012528 151 VQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALAN 229 (461)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~ 229 (461)
+|++++.|+++|++++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+| +|||++
T Consensus 95 ~NA~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 174 (939)
T 1q2l_A 95 HNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSK 174 (939)
T ss_dssp EEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGS
T ss_pred ceEEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCChhhhcc----CCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC-C-CCCCCCC--ce
Q 012528 230 PLLAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-P-KSVYTGG--DY 300 (461)
Q Consensus 230 ~~~~~~~~l~~----it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~-~-~~~~~~~--~~ 300 (461)
+..|+.++|.+ ++.++|++||++||.|+||+|+|+| +++++++++++++|+.||....+.. . .+++... ..
T Consensus 175 ~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (939)
T 1q2l_A 175 FSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGI 254 (939)
T ss_dssp CCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSE
T ss_pred CCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCE
Confidence 99999999999 9999999999999999999999999 9999999999999999987543321 1 1222221 12
Q ss_pred EEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeec--cc
Q 012528 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS--NI 378 (461)
Q Consensus 301 ~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~--~~ 378 (461)
.+......+++++.++|..|.. .+..+..++.+++.+||++++ ++|+..||+ .||+|+++++. ..
T Consensus 255 ~~~~~~~~~~~~l~i~~~~~~~-~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~ 321 (939)
T 1q2l_A 255 IIHYVPALPRKVLRVEFRIDNN-SAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIV 321 (939)
T ss_dssp EEEECCSSCCCEEEEEEEEECC-GGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESST
T ss_pred EEEEEeCCCCcEEEEEEEcCCh-HHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeecccccc
Confidence 3333233378899999999862 233367788999999997643 899999995 69999999874 34
Q ss_pred cCCcceEEEEEEeCc---ccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 012528 379 YNHSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL-ESRMVVSEDIGRQVL 451 (461)
Q Consensus 379 ~~~~~~~~i~~~~~p---~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~-~s~~~~~~~i~~~~~ 451 (461)
+.+.+.|.|++.+.+ ++.+++++.+.++|+.+++.| ++++||+++|+.+..++.... +++..+++.++.+++
T Consensus 322 ~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (939)
T 1q2l_A 322 NGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG-IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI 397 (939)
T ss_dssp TSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT
T ss_pred CCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh
Confidence 457799999999887 589999999999999999888 999999999999999998766 777888999988866
No 13
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.8e-43 Score=364.93 Aligned_cols=350 Identities=17% Similarity=0.149 Sum_probs=289.2
Q ss_pred CceEEEEcCCCcEEEEecC---CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHH----HcCC
Q 012528 77 GKTKISTLPNGVKIASETS---VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE----AIGG 149 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~---~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~----~~g~ 149 (461)
+.++.++|+||++|++..+ +.|.+++.+++++|+++|+++..|++||++||+|+||.+++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999995433 35699999999999999999999999999999999999999999987665 4789
Q ss_pred eeeEEecceeEEEEEEccC---CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CC
Q 012528 150 NVQASASREQMGYSFDALK---TYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SG 225 (461)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~ 225 (461)
.++++++.|+++|++++++ ++++.+|++|.+++.+|.|++++|+++|..+.++++...++|....+ ....+ .+
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCC
Confidence 9999999999999999999 67999999999999999999999999999887777766677765433 23345 55
Q ss_pred CCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC--C-CCCCCCCceE
Q 012528 226 ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P-KSVYTGGDYR 301 (461)
Q Consensus 226 p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~--~-~~~~~~~~~~ 301 (461)
+++++..+ +.|++++.++|++||++||.|+||+++++| +++++++++++++|++||....... + .++..+....
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 66665432 578999999999999999999999999999 9999999999999999987543221 1 1222223333
Q ss_pred -EecCCCCCceEEEEEeecCCCCCCCchhHHH------HHHHHhhCCCCCCCCCCCCCCcccHhHHHHHh--hCCCeEEE
Q 012528 302 -CQADSGDQLTHFVLAFELPGGWHKDKDAMTL------TVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN--EFPQVQSF 372 (461)
Q Consensus 302 -~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~------~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe--~~g~~Y~~ 372 (461)
...+. .++++.++|.+|. ..++|..++ .|++.+|+ ++|+.++|+ +.|++|++
T Consensus 259 ~~~~~~--~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~ 319 (492)
T 3go9_A 259 LMNEQA--AQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGF 319 (492)
T ss_dssp EEESSC--SSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEE
T ss_pred EEcCCC--CCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhcccccccc
Confidence 33444 8999999999986 456665544 89999998 799999999 89999999
Q ss_pred EeeccccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHH
Q 012528 373 SAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE-----SRMVVSEDIG 447 (461)
Q Consensus 373 ~a~~~~~~~~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~-----s~~~~~~~i~ 447 (461)
+++.....+.+. +++.+++++.+++++.+.++++++++.| +|++||+++|+.+++++...++ ++..+++.+.
T Consensus 320 ~s~~~~~~~~~~--~~i~~~~~~~~~a~~~i~~el~~l~~~g-~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~ 396 (492)
T 3go9_A 320 DCRVQYQRAQCA--IHLNTPVENLTANMTFVARELAALRANG-LSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRL 396 (492)
T ss_dssp EEEEETTEEEEE--EEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHH
T ss_pred CchhhhhhcceE--EEEEcCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 998766555554 4556689999999999999999999888 9999999999999999987654 4677888887
Q ss_pred HHHHhc
Q 012528 448 RQVLTY 453 (461)
Q Consensus 448 ~~~~~~ 453 (461)
++++..
T Consensus 397 ~~~~~~ 402 (492)
T 3go9_A 397 RSQQSG 402 (492)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 776643
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.7e-41 Score=378.76 Aligned_cols=366 Identities=16% Similarity=0.147 Sum_probs=310.7
Q ss_pred CCCCCCceEEEEcCCCcEEEEecC-CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCH-HHHHHHHHHcCC
Q 012528 72 DYVEPGKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGG 149 (461)
Q Consensus 72 ~~~~~~~~~~~~L~NGl~v~~~~~-~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~-~~l~~~l~~~g~ 149 (461)
...+...++..+|+||++|++.+. ..+.+++.+++++|++.|+++..|++|++|||+|+||.+++. .++.+.++.+|+
T Consensus 28 ~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg 107 (990)
T 3cww_A 28 SPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAG 107 (990)
T ss_dssp CTTCCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTC
T ss_pred CCCCCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCC
Confidence 344556889999999999996554 467999999999999999999999999999999999999986 789999999999
Q ss_pred eeeEEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCC
Q 012528 150 NVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALA 228 (461)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~ 228 (461)
.+|++++.|+++|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+| +|||+
T Consensus 108 ~~NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~ 187 (990)
T 3cww_A 108 SSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFS 187 (990)
T ss_dssp EEEEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGG
T ss_pred ceeEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999 99999
Q ss_pred CCCCCChhhhccC-------CHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC-C-CCCCCC
Q 012528 229 NPLLAPESAINRL-------NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-K-SVYTGG 298 (461)
Q Consensus 229 ~~~~~~~~~l~~i-------t~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~~~~~~-~-~~~~~~ 298 (461)
++..|+.+.|..+ +.++|++||++||.|+||+++++| +++++++++++++|+.||....+... . +++...
T Consensus 188 ~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~ 267 (990)
T 3cww_A 188 KFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEE 267 (990)
T ss_dssp CCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGG
T ss_pred cCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChH
Confidence 9999999999999 999999999999999999999999 99999999999999999875432211 1 122111
Q ss_pred --ceEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeec
Q 012528 299 --DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS 376 (461)
Q Consensus 299 --~~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~ 376 (461)
...+......+++++.++|..|.. .+..+..++.+++.+||+++ ..+ |+..||+ .||+|+++++.
T Consensus 268 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~lLg~~~----------~~s-l~~~Lr~-~g~~~~~~a~~ 334 (990)
T 3cww_A 268 HLKQLYKIVPIKDIRNLYVTFPIPDL-QKYYKSNPGHYLGHLIGHEG----------PGS-LLSELKS-KGWVNTLVGGQ 334 (990)
T ss_dssp GSSEEEEECCSSSCCEEEEEEEECCC-GGGTTTCHHHHHHHHHTCCS----------TTC-HHHHHHH-TTSCSCEEEEE
T ss_pred HcCeEEEEEECCCCcEEEEEEEcCCh-hhhhhhCHHHHHHHHhcCCC----------CCc-HHHHHHH-CCCcceeeecc
Confidence 111222222268899999999862 23457888999999998642 124 6679996 59999999876
Q ss_pred cc-cCCcceEEEEEEeCc---ccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHH
Q 012528 377 NI-YNHSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVVSEDIGRQVL 451 (461)
Q Consensus 377 ~~-~~~~~~~~i~~~~~p---~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~-~~s~~~~~~~i~~~~~ 451 (461)
.. +.+.+.|.|++.+.+ ++++++++.+.++|+.+++.| +++++|+++|......+... .+++..++..++..+.
T Consensus 335 ~~~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 413 (990)
T 3cww_A 335 KAGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEG-PQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILH 413 (990)
T ss_dssp EEEETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT
T ss_pred ccCCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHh
Confidence 63 456789999999765 489999999999999999888 99999999998888777653 5678888888876543
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=4.3e-41 Score=375.55 Aligned_cols=365 Identities=13% Similarity=0.083 Sum_probs=303.6
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHH-HHHHH-HcCCeeeEE
Q 012528 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI-VREVE-AIGGNVQAS 154 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l-~~~l~-~~g~~~~~~ 154 (461)
..++..+|+||++|++.+.+.... ++.+|++.++++..|++|++|||+|+||.+++..++ .+.+. ..|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 456778999999999776665433 356788899999999999999999999999987774 45455 468899999
Q ss_pred ecceeEEEEEEcc-CCCHHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHHHhhcCChHHHHHH
Q 012528 155 ASREQMGYSFDAL-KTYVPEMVELLIDCVRNPVF--LDWEVNEQ---------------LTKVKSEISEVSNNPQSLLLE 216 (461)
Q Consensus 155 ~~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~f--~~~~~~~~---------------k~~~~~el~~~~~~p~~~~~~ 216 (461)
++.|+++|.+.+. .++++.+|+++.+.+.+|.| ++++|+++ |..+.+|++...++|...+.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 9999999999876 46899999999999999999 99999999 899999999999999999999
Q ss_pred HHHHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCC--CCC--CCCC
Q 012528 217 AIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP--SIH--PREE 290 (461)
Q Consensus 217 ~l~~~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp--~~~--~~~~ 290 (461)
.++..+| +|||+++..|++++|.+++.++|++||++||.|+||+|+++| +|+++++++++++|+.|| ... ....
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 9999999 999999999999999999999999999999999999999999 999999999999999998 422 1111
Q ss_pred CCCCCCCCc---eEEec---CCCCCceEEEEEeecCCCCC-CCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHH
Q 012528 291 PKSVYTGGD---YRCQA---DSGDQLTHFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVL 363 (461)
Q Consensus 291 ~~~~~~~~~---~~~~~---~~~~~~~~v~l~~~~~~~~~-~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lR 363 (461)
..+++.... ..+.. +...+++++.++|.+|.. . +.++..++.+++.+|+++ ++|||+..||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~a~~vl~~~Lg~~-----------~~S~L~~~l~ 339 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEK-PLDLQTQLALGFLDHLMLGT-----------PASPLRKILL 339 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSS-CCCHHHHHHHHHHHHHHHSS-----------TTSHHHHHHH
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCCC-cCCHHHHHHHHHHHHHHcCC-----------CCCHHHHHHH
Confidence 122333221 12221 322368999999999862 2 358899999999999865 4499999999
Q ss_pred hhCCCeEEEEee-ccccCCcceEEEE-EEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc--CCh
Q 012528 364 NEFPQVQSFSAF-SNIYNHSGMFGIQ-GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL--ESR 439 (461)
Q Consensus 364 e~~g~~Y~~~a~-~~~~~~~~~~~i~-~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~--~s~ 439 (461)
++ ||+|+++++ +..+...+.|.|. ..+++++++++++.+.++|++++++| ++++||+++|+.+..++.... +++
T Consensus 340 e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~ak~~~~~~~~~~~~~~~~ 417 (995)
T 2fge_A 340 ES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEG-FDNDAVEASMNTIEFSLRENNTGSFP 417 (995)
T ss_dssp HT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCTTSC
T ss_pred hc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 86 999999876 5555557899986 46899999999999999999999888 999999999999999998654 234
Q ss_pred H--HHHHHHHHHHHhcCcccCC
Q 012528 440 M--VVSEDIGRQVLTYGERCRY 459 (461)
Q Consensus 440 ~--~~~~~i~~~~~~~g~~~~~ 459 (461)
. .++..++++++..|.+..+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~ 439 (995)
T 2fge_A 418 RGLSLMLQSISKWIYDMDPFEP 439 (995)
T ss_dssp HHHHHHHHHHHHHTTTSCSSGG
T ss_pred cHHHHHHHHHHHHhcCCChHHH
Confidence 4 4678888888766665543
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=3.9e-40 Score=365.74 Aligned_cols=370 Identities=14% Similarity=0.095 Sum_probs=304.0
Q ss_pred CCceEEEEcCCCcEEEEecCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHH--cCCeee
Q 012528 76 PGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNVQ 152 (461)
Q Consensus 76 ~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~--~g~~~~ 152 (461)
.+.++...|+||++|++.+.+.+ .+.+ .+..|+..+++...|++|++|||+|+|+++++..++...+.. .|+.+|
T Consensus 84 ~~~~~~~~l~nGl~vl~i~~~~~~~~~~--~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lN 161 (1193)
T 3s5m_A 84 MTYTVYQHKKAKTQVISLGTNDPLDVEQ--AFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLN 161 (1193)
T ss_dssp EEEEEEEETTTCCEEEEEEECCTTCCCE--EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEE
T ss_pred ccceEEEECCCCCEEEEEECCCCCeEEE--EEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEE
Confidence 35678889999999996655543 2222 244577778899999999999999999999999999999988 889999
Q ss_pred EEecceeEEEEEEccC-CCHHHHHHHHHHhhhCCCCCHHH--HHHH-----------------------------HHHHH
Q 012528 153 ASASREQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWE--VNEQ-----------------------------LTKVK 200 (461)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~--~~~~-----------------------------k~~~~ 200 (461)
++++.|+++|.+++++ ++++.+|+++.|.+.+|.|++++ |.++ |..+.
T Consensus 162 A~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~ 241 (1193)
T 3s5m_A 162 AYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVY 241 (1193)
T ss_dssp EEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHH
T ss_pred eEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHH
Confidence 9999999999999888 89999999999999999998877 8776 56899
Q ss_pred HHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhh
Q 012528 201 SEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL 278 (461)
Q Consensus 201 ~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~ 278 (461)
+|++...++|...+.+.+...+| +|||+++..|++++|.+++.++|++||++||.|+|++++++| +++++++++++++
T Consensus 242 ~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~ 321 (1193)
T 3s5m_A 242 NEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQY 321 (1193)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCCCCCCC----C-CC-CCCCCC-ceEEec--CCCCCceEEEEEeecCCC---CCC---------------------
Q 012528 279 LSDLPSIHPRE----E-PK-SVYTGG-DYRCQA--DSGDQLTHFVLAFELPGG---WHK--------------------- 325 (461)
Q Consensus 279 ~~~lp~~~~~~----~-~~-~~~~~~-~~~~~~--~~~~~~~~v~l~~~~~~~---~~~--------------------- 325 (461)
|+.||..+.+. . +. ++..+. ...... .....++++.++|..|+. ..+
T Consensus 322 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~ 401 (1193)
T 3s5m_A 322 LGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSH 401 (1193)
T ss_dssp HTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCC
T ss_pred hccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccc
Confidence 99998543311 1 11 122222 222221 122378999999999841 012
Q ss_pred --------CchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEE-eeccccCCcceEEEEEE-eCccc
Q 012528 326 --------DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFS-AFSNIYNHSGMFGIQGT-TGSDF 395 (461)
Q Consensus 326 --------~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~-a~~~~~~~~~~~~i~~~-~~p~~ 395 (461)
+++.+++.||+.||+|| ++||||+.||++ |++|+++ +++......+.|.|++. +++++
T Consensus 402 ~~~~~~~~~~d~~al~vL~~iLggg-----------~sSrL~~~L~e~-gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~ 469 (1193)
T 3s5m_A 402 SSDLSLENPTDYFVLLIINNLLIHT-----------PESVLYKALTDC-GLGNNVIDRGLNDSLVQYIFSIGLKGIKRNN 469 (1193)
T ss_dssp CSTTCCCSHHHHHHHHHHHHHHHSS-----------TTSHHHHHHHHH-CSCSEEEEEEEECSSSSCEEEEEEEEECTTC
T ss_pred cccccccCccHHHHHHHHHHHHCCC-----------CCCHHHHHHHhc-CCeeeecccccccccCCcEEEEEEecCChhh
Confidence 47899999999999976 449999999985 9999998 56666666788888874 55543
Q ss_pred --------H-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh-cCChH--HHHHHHHHHHHhcCcccCCC
Q 012528 396 --------V-SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRM--VVSEDIGRQVLTYGERCRYF 460 (461)
Q Consensus 396 --------~-~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~-~~s~~--~~~~~i~~~~~~~g~~~~~~ 460 (461)
+ +++.+.+.++|++++++| ++++||+++|+++..++... ..++. .++..+...|+..|++..++
T Consensus 470 ~~~~~~~~~~~~~~~~I~~~L~~l~~~g-i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l 545 (1193)
T 3s5m_A 470 EKIKNFDKVHYEVEDVIMNALKKVVKEG-FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIF 545 (1193)
T ss_dssp TTCSCGGGHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTT
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 6 699999999999999998 99999999999999998774 45554 34556777888888877643
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=1.2e-39 Score=322.16 Aligned_cols=312 Identities=21% Similarity=0.269 Sum_probs=264.6
Q ss_pred cEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecceeEEEEEEcc
Q 012528 88 VKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (461)
Q Consensus 88 l~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (461)
+||++++.+.|.+++++++++|+++| ...|++|+++||+|+||++++..++.+.++.+|++++++++.++++|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 68999888899999999999999997 3789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHH
Q 012528 168 KTYVPEMVELLIDCVRNPVFLDWEVN-EQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (461)
Q Consensus 168 ~~~l~~~l~ll~~~~~~p~f~~~~~~-~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l 246 (461)
+++++.+|+++.+++.+|.|++++|+ ++|+.+.++++...++|...+.+.++..+|.||++++.. .+.|++++.++|
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999889998874 689999999999
Q ss_pred HHHHHhhcCCCCeEEEEeCCCHHHHHHHH-HhhhCCCCCCCCCCC--CCCCCCCCceEEecCCCCCceEEEEEeecCCCC
Q 012528 247 EEFVAENYTGPRMVLAASGVEHDQLVSVA-EPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGW 323 (461)
Q Consensus 247 ~~f~~~~~~~~~~~l~ivGv~~~~l~~li-~~~~~~lp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 323 (461)
++||+++|.|+||+++++|++++++++++ +++|+.||....+.. ..+.+.++..++.. . .++.+.+++ +
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~---~-- 228 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-I--GDSVAAIGI---P-- 228 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-S--SSEEEEEEE---E--
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-C--CCceEEEec---C--
Confidence 99999999999999999999999999999 899999986543221 12233344444322 2 566666653 2
Q ss_pred CCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEEeCcccHHHHHHHH
Q 012528 324 HKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLA 403 (461)
Q Consensus 324 ~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~~~~~~i~~~ 403 (461)
.++++.+++.|++.+|| + +||++.|++ +++++..+.+.|.|.+++.++ +.+++.+.+
T Consensus 229 ~~~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~i 285 (352)
T 3cx5_B 229 VNKASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ--DSAVVSSNI 285 (352)
T ss_dssp ECTTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEES--CHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeC--CHHHHHHHH
Confidence 35679999999999998 3 578888886 555555567789999999997 344444444
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCh
Q 012528 404 ARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 439 (461)
Q Consensus 404 ~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~ 439 (461)
.+++.. | ++++||+++|+.++.++..+++++
T Consensus 286 ~~~l~~----~-~t~~el~~ak~~~~~~~~~~~~~~ 316 (352)
T 3cx5_B 286 KKIVAD----L-KKGKDLSPAINYTKLKNAVQNESV 316 (352)
T ss_dssp HHHHHH----H-HSCEECGGGHHHHHHHHHHHCCST
T ss_pred HHHHHh----c-CCHHHHHHHHHHHHHHHHhhhhcc
Confidence 444433 4 889999999999999999998874
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.6e-32 Score=304.84 Aligned_cols=375 Identities=9% Similarity=0.033 Sum_probs=289.1
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEEecCCC----CeEEEEEEEcccccCCCCCCCcHHHHHHHhh
Q 012528 53 SSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVS----PVASISLYVGCGSIYESPISFGTTHLLERMA 128 (461)
Q Consensus 53 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~~~~~~----~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~ 128 (461)
.+|..++++|....+.+ +.. .....+.++|+||++|++++++. |++.|.+.+.+|...+++...|+++++..|+
T Consensus 476 ~~p~~n~~~~~~~~~~~-~~~-~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll 553 (939)
T 1q2l_A 476 SLPELNPYIPDDFSLIK-SEK-KYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLA 553 (939)
T ss_dssp CCCCCCTTCCCCCCCCC-CSS-CCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCcCccccc-CcC-CCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 34555666655442222 111 11223677899999999887762 4999999999999998877789999999999
Q ss_pred cCCCCCCCHHHHHHHHHHcCCeeeEEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhh-c
Q 012528 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV-S 207 (461)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~-~ 207 (461)
..|+.++ ....+..|.+++++. .+.+.+.+++.+++++.+|+++.+.+++|.|++++|+.+|+.++.++++. .
T Consensus 554 ~~g~~~~-----~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~ 627 (939)
T 1q2l_A 554 GLALDQL-----SNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEK 627 (939)
T ss_dssp HHHHHHH-----HHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-----hhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 8776533 333455677888888 99999999999999999999999999999999999999999999999987 5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCC
Q 012528 208 NNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH 286 (461)
Q Consensus 208 ~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~li~~~~~~lp~~~ 286 (461)
++|..++.+.++..+|.+ + ++..++.+.|++++.+++++||+++|.+.+++++++| +++++++++++++++.++...
T Consensus 628 ~~p~~~a~~~l~~~l~~~-~-~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~ 705 (939)
T 1q2l_A 628 GKAFEQAIMPAQMLSQVP-Y-FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADG 705 (939)
T ss_dssp SCHHHHHHHHHHHTTSSS-C-CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCC
T ss_pred cChHHHHHHHHHHHhcCC-C-CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCC
Confidence 679998999999888732 2 4555788999999999999999999999999999999 999999999999998887543
Q ss_pred CCCCCC--CCCCCC-ceEEecCCCCCceEE-EEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHH
Q 012528 287 PREEPK--SVYTGG-DYRCQADSGDQLTHF-VLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRV 362 (461)
Q Consensus 287 ~~~~~~--~~~~~~-~~~~~~~~~~~~~~v-~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~l 362 (461)
.+.... ....++ ...+.......++.+ .+.|..+. .+.++.+++.+|..++. +|||++|
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lL~~~~~---------------s~lf~~L 768 (939)
T 1q2l_A 706 SEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGY--DEYTSSAYSSLLGQIVQ---------------PWFYNQL 768 (939)
T ss_dssp SCCCCCEEECCCSCEEEEEEECCSSSCEEEEEEEECSSC--CHHHHHHHHHHHHHHHH---------------HHHTHHH
T ss_pred ccccccceEEeCCCceEEEecCCCCCCceeEEEEEecCC--CCHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 222111 111222 323333332234455 56665542 34445555666665554 9999999
Q ss_pred HhhCCCeEEEEeecccc-CCcc-eEEEEE-EeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCh
Q 012528 363 LNEFPQVQSFSAFSNIY-NHSG-MFGIQG-TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 439 (461)
Q Consensus 363 Re~~g~~Y~~~a~~~~~-~~~~-~~~i~~-~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~ 439 (461)
|++.|++|+|+++.... ...| .|.|+. .++|+++.++++.+.+++.++.+ | +|++||+++|+.++.++....++.
T Consensus 769 Rek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~-~t~~el~~~k~~l~~~~~~~~~s~ 846 (939)
T 1q2l_A 769 RTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR-A-MKPDEFAQIQQAVITQMLQAPQTL 846 (939)
T ss_dssp HTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHTCCCSSH
T ss_pred HHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999987633 3345 366666 67899999999999999999874 6 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 012528 440 MVVSEDIGRQVLTYGER 456 (461)
Q Consensus 440 ~~~~~~i~~~~~~~g~~ 456 (461)
...+..++.+++..+..
T Consensus 847 ~~~~~~~w~~i~~~~~~ 863 (939)
T 1q2l_A 847 GEEASKLSKDFDRGNMR 863 (939)
T ss_dssp HHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 88888888887765543
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.97 E-value=3.8e-30 Score=287.18 Aligned_cols=348 Identities=11% Similarity=0.014 Sum_probs=270.2
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcC-CCCCCCHHHHHHHHHHcCCeeeE-
Q 012528 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQA- 153 (461)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~-gt~~~s~~~l~~~l~~~g~~~~~- 153 (461)
.+++.. +.||++|++.+.. .+.+++.+++++|+. +++..+..+++.++++. ||++++..++.+.++...|.+++
T Consensus 552 ~~~~~~-~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~ 628 (995)
T 2fge_A 552 VPTEVG-DINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVY 628 (995)
T ss_dssp CCCEEE-ESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEE
T ss_pred CCceee-ecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEee
Confidence 344444 4899999977665 569999999999886 45678889999888774 99999999999999966665665
Q ss_pred ----Eecc-----eeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 012528 154 ----SASR-----EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVS-NNPQSLLLEAIHSAG 222 (461)
Q Consensus 154 ----~~~~-----~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~-~~~~~k~~~~~el~~~~-~~p~~~~~~~l~~~~ 222 (461)
+++. +.+.|++++++++++.+|+++.+++++|.|+++ +|+++++.++.++++.. +++..++...++...
T Consensus 629 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 708 (995)
T 2fge_A 629 PLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAML 708 (995)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred ccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhC
Confidence 5544 899999999999999999999999999999998 99999999999999775 567777787777664
Q ss_pred c-CCCCCCCCCC-----C--------hhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCH-HHHHHHHHhhhCCC-CCC
Q 012528 223 Y-SGALANPLLA-----P--------ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDL-PSI 285 (461)
Q Consensus 223 ~-~~p~~~~~~~-----~--------~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~-~~l~~li~~~~~~l-p~~ 285 (461)
+ .++++....| . .+.++.+ .++|++||+++|.+++|+++++| +++ ++++++++++|+.+ |..
T Consensus 709 ~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~ 787 (995)
T 2fge_A 709 NIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENP 787 (995)
T ss_dssp CHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSC
T ss_pred ChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccC
Confidence 4 4444322111 1 1457888 99999999999999999999999 995 99999999999999 754
Q ss_pred CCCCCCCCCCCCCc--eEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHH
Q 012528 286 HPREEPKSVYTGGD--YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVL 363 (461)
Q Consensus 286 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lR 363 (461)
..+.. ...+.++. ..+..+. ...++..++.... +++++.+++.|++.||++ ++||.+||
T Consensus 788 ~~~~~-~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iR 848 (995)
T 2fge_A 788 SGGLV-TWDGRLPLRNEAIVIPT--QVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVR 848 (995)
T ss_dssp SSCSC-CCCCCCCCCCEEEECSC--SSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTT
T ss_pred CCCCC-cccccCCccceEEEecC--ceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhh
Confidence 43221 11111111 1222222 5566666665554 688999999999999985 68999999
Q ss_pred hhCCCeEEEEeeccccCCcceEE-EEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 012528 364 NEFPQVQSFSAFSNIYNHSGMFG-IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVV 442 (461)
Q Consensus 364 e~~g~~Y~~~a~~~~~~~~~~~~-i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~ 442 (461)
+ .|++|++++.+.. .|.|+ ++...+| ++.++++.+.+.+..+++.+ +|++||++||..+++++ ...+++...
T Consensus 849 e-~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~-~te~el~~ak~~li~~~-~~~~~~~~~ 921 (995)
T 2fge_A 849 V-SGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLD-VDQETLTKAIIGTIGDV-DSYQLPDAK 921 (995)
T ss_dssp T-TTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCC-CCHHHHHHHHHHHHHHH-TCCCCHHHH
T ss_pred h-cCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhc-cCCCCHHHH
Confidence 9 8999999998765 48888 8888888 68888898888888887655 99999999999999998 345666666
Q ss_pred HHHHHHHHHhcCc
Q 012528 443 SEDIGRQVLTYGE 455 (461)
Q Consensus 443 ~~~i~~~~~~~g~ 455 (461)
+......++ +|.
T Consensus 922 ~~~~~~~~~-~g~ 933 (995)
T 2fge_A 922 GYSSLLRHL-LGV 933 (995)
T ss_dssp HHHHHHHHH-TTC
T ss_pred HHHHHHHHH-cCc
Confidence 555543333 454
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.97 E-value=6.5e-29 Score=277.18 Aligned_cols=374 Identities=10% Similarity=0.044 Sum_probs=288.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEEecCC---CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcC
Q 012528 54 SPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMAFR 130 (461)
Q Consensus 54 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~~~~~---~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~ 130 (461)
+|..+.++|....+.+.+..... ....++++||++|++++++ .|...+.+.+.+|...+++...++++++..|+..
T Consensus 495 ~p~~~~~ip~~~~~~~~~~~~~~-~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~ 573 (990)
T 3cww_A 495 LPTKNEFIPTNFEILPLEAAATP-YPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKD 573 (990)
T ss_dssp CCCCCTTCCCCCCCCCCCTTCCS-SCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccccccCCCCCCC-CCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45556666663323333311111 2256889999999977655 4688888888888777777778899999999765
Q ss_pred CCCCCCHHHHHHHHHHcCCeeeEEecceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcC-C
Q 012528 131 STRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN-N 209 (461)
Q Consensus 131 gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~el~~~~~-~ 209 (461)
+ ++..++...+ .|++++++++.+.+.+++++++++++.+|+++.+.+++|.|++++|++.|+.++..+++... +
T Consensus 574 ~---~~~~~~~~~l--~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~ 648 (990)
T 3cww_A 574 S---LNEYAYAAEL--AGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQ 648 (990)
T ss_dssp H---HHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSC
T ss_pred H---HHHhhhHHHh--CCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 3 3444555444 58889999999999999999999999999999999999999999999999999999998766 8
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CCHHHHHHH---HHhhhCCCCCC
Q 012528 210 PQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSV---AEPLLSDLPSI 285 (461)
Q Consensus 210 p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~~~~l~~l---i~~~~~~lp~~ 285 (461)
|..++.+.+...++.+++. ..+..+.|++++.++|.+|++++|.+.+++++++| ++.+++.++ ++++|+.+|..
T Consensus 649 p~~~a~~~~~~~l~~~~~~--~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~ 726 (990)
T 3cww_A 649 PHQHAMYYLRLLMTEVAWT--KDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHT 726 (990)
T ss_dssp HHHHHHHHHHHHHBSSCCC--HHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHhCCCCCC--HHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999988754443 23467899999999999999999999999999999 999999888 67788766532
Q ss_pred CCCC-----C-CC-CCCCCCceEEe-cCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccH
Q 012528 286 HPRE-----E-PK-SVYTGGDYRCQ-ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSR 357 (461)
Q Consensus 286 ~~~~-----~-~~-~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~sr 357 (461)
.+.. . .. ....+....+. ......++.+.+++..+. .+.++.+++.|++.+|. ++
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~---------------~~ 789 (990)
T 3cww_A 727 KPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS---------------EP 789 (990)
T ss_dssp EECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH---------------HH
T ss_pred CCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH---------------HH
Confidence 1111 0 00 11122222222 233335666767677654 57889999999999997 99
Q ss_pred hHHHHHhhCCCeEEEEeeccccCCcce--EEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Q 012528 358 LYRRVLNEFPQVQSFSAFSNIYNHSGM--FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN 435 (461)
Q Consensus 358 L~~~lRe~~g~~Y~~~a~~~~~~~~~~--~~i~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~ 435 (461)
||.+||++.|++|++++......+... |.++..++|+++.++++.+.+++..+++ + +|++||+++|..+++++...
T Consensus 790 lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~-~te~el~~~k~~li~~~~~~ 867 (990)
T 3cww_A 790 AFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-D-MTEEAFQKHIQALAIRRLDK 867 (990)
T ss_dssp HHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-h-cCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998765433322 2335556899999999999999999988 6 99999999999999999988
Q ss_pred cCChHHHHHHHHHHHHhcC
Q 012528 436 LESRMVVSEDIGRQVLTYG 454 (461)
Q Consensus 436 ~~s~~~~~~~i~~~~~~~g 454 (461)
.++........+..++..+
T Consensus 868 ~~~~~~~~~~~~~~i~~~~ 886 (990)
T 3cww_A 868 PKKLSAESAKYWGEIISQQ 886 (990)
T ss_dssp CSSHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 8888887777777766544
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.93 E-value=1e-25 Score=250.39 Aligned_cols=344 Identities=12% Similarity=0.065 Sum_probs=252.9
Q ss_pred CCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhh-cCCCCCCCHHHHHHHHHHcCCeeeEEec------
Q 012528 85 PNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMA-FRSTRNRSHLRIVREVEAIGGNVQASAS------ 156 (461)
Q Consensus 85 ~NGl~v~~~~~~-~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~-~~gt~~~s~~~l~~~l~~~g~~~~~~~~------ 156 (461)
.||++|++.+.+ ++.+++.++++.|... .+..+...|+..++ ..||++++..++.+.++.++|+++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999866555 6799999999999644 45667777777776 5599999999999999999999888864
Q ss_pred ----------ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhh-cCChHHHHHHHHHHHhc-
Q 012528 157 ----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGY- 223 (461)
Q Consensus 157 ----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~el~~~-~~~p~~~~~~~l~~~~~- 223 (461)
...+.+++.++.++++++++++.+++.+|+|++.+ +++.+...++.+.+. ..+...++...+.+...
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 44578999999999999999999999999999764 777777777776643 34444444444444443
Q ss_pred CCCCCCCCCCChhh--------------hccCCHHHHHHHHHhhcCCCCeEEEEeC-CC-HHHHHHHHHhhhCCCCC---
Q 012528 224 SGALANPLLAPESA--------------INRLNSTLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPS--- 284 (461)
Q Consensus 224 ~~p~~~~~~~~~~~--------------l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~-~~~l~~li~~~~~~lp~--- 284 (461)
.+++.....| .+. ++.+ .++|++++++.|+++++++.++| .+ .+++.+.++++++.++.
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~ 959 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFE 959 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccc
Confidence 3333222222 122 2233 67899999999999999999999 75 47777777766655531
Q ss_pred -CCC----------CC-CC--------CCCC-C--CCceEEecCCCCCceEEEEEeecCCCCCCCchhHHHHHHHHhhCC
Q 012528 285 -IHP----------RE-EP--------KSVY-T--GGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGG 341 (461)
Q Consensus 285 -~~~----------~~-~~--------~~~~-~--~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~ 341 (461)
... .. .. .... . .....+..+. ++.+++.++.... ..++|++++.|++.|||+
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~ 1035 (1193)
T 3s5m_A 960 ENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPT--FVNSVSMSGILFK--PGEYLDPSFTVIVAALKN 1035 (1193)
T ss_dssp HGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCC--SSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccceeEecCC--cceEEEEEecCCC--CCCCchHHHHHHHHHHCc
Confidence 000 00 00 0001 1 1122334444 7889999988776 788999999999999994
Q ss_pred CCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcC--CCCCCHH
Q 012528 342 GGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT--PGEVDQV 419 (461)
Q Consensus 342 ~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~~~~~p~~~~~~i~~~~~~l~~l~~--~g~~s~~ 419 (461)
++||.+||++.| +|++++++. ..|.|.++...+| +..+.++.+.+++..+++ +| +|++
T Consensus 1036 --------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp-~~~~tl~~~~~~~~~l~~~~~~-~tee 1095 (1193)
T 3s5m_A 1036 --------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDP-NLEKTLATFRESAKGLRKMADT-MTEN 1095 (1193)
T ss_dssp --------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBS-CSHHHHHHHHTHHHHHHHHHHH-CCHH
T ss_pred --------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhhcCC-CCHH
Confidence 799999999876 999999876 5688988888887 478888988888887766 56 9999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcccC
Q 012528 420 QLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERCR 458 (461)
Q Consensus 420 el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~~~ 458 (461)
||++||..+++++. ...++...+...+. ...+|.+..
T Consensus 1096 EL~~ak~~~~~~~d-~p~~p~~~a~~~~~-~~~~Gl~~d 1132 (1193)
T 3s5m_A 1096 DLLRYIINTIGTID-KPRRGIELSKLSFL-RLISNESEQ 1132 (1193)
T ss_dssp HHHHHHHHHHHHHS-CCCCTHHHHHHHHH-HHHTTCCHH
T ss_pred HHHHHHHHHHhccc-ccCChHHHHHHHHH-HHHcCcCHH
Confidence 99999999999964 55666667766654 455776554
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.77 E-value=5.2e-18 Score=152.82 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=122.0
Q ss_pred CceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCcccHhHHHHHhhCCCeEEEEeeccccCCcceEEEE
Q 012528 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (461)
Q Consensus 309 ~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~srL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i~ 388 (461)
+++++.++|.+|+ .++++.+++.|++.+|++| ++||||++||++ |++|++++++..+.+.|.|.|+
T Consensus 23 ~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~ 88 (197)
T 3ih6_A 23 GTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFG 88 (197)
T ss_dssp CSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEE
T ss_pred CCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCeEEEEE
Confidence 7999999999997 6789999999999999976 559999999986 9999999988878889999999
Q ss_pred EEeCcc-cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCcc
Q 012528 389 GTTGSD-FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456 (461)
Q Consensus 389 ~~~~p~-~~~~~i~~~~~~l~~l~~~g~~s~~el~~ak~~~~~~~~~~~~s~~~~~~~i~~~~~~~g~~ 456 (461)
+.++|+ +.+++++.+.++|.+++++| ++++||+++|+.++.++...++++..++..++++++ +|..
T Consensus 89 ~~~~~~~~~~~~~~~i~~~l~~l~~~~-it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~ 155 (197)
T 3ih6_A 89 AQLQPGMDQDKALQTLTATLESLSSKP-FSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDW 155 (197)
T ss_dssp EECCTTSCHHHHHHHHHHHHHCTTTSC-CCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCH
Confidence 999998 59999999999999999987 999999999999999999999999999999998887 4754
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.29 E-value=1.9e-05 Score=69.98 Aligned_cols=161 Identities=5% Similarity=-0.054 Sum_probs=111.3
Q ss_pred CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEec------ceeEEEEEEccCC-
Q 012528 97 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS------REQMGYSFDALKT- 169 (461)
Q Consensus 97 ~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~- 169 (461)
.+...+.+.+.+....+ ...-...++..++..|.. ..|.+.|...|...+++.. ...+.+.+.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~~--~d~~al~vl~~iLggg~s----SrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~ 95 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGS--PDFVGLDLAATILADTPS----SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGM 95 (197)
T ss_dssp CCSCEEEEEEECCCTTS--TTHHHHHHHHHHHHSSTT----SHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTS
T ss_pred CCCceEEEEEecCCCCC--CcHHHHHHHHHHHcCCCC----chHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCC
Confidence 34455555566655443 244456677777765432 3566666555654444332 2346677777777
Q ss_pred CHHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHH
Q 012528 170 YVPEMVELLIDCVRNP---VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (461)
Q Consensus 170 ~l~~~l~ll~~~~~~p---~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l 246 (461)
+++++++.+.+.+.+- .++++++++.|..++..+....+++...+........++.+ .......+.|+++|.+++
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~--~~~~~~~~~i~~vT~~dv 173 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDW--RLFFLQRDRVREAKLDDV 173 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCT--THHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCHHHH
Confidence 6998888887776543 58999999999999999988888888877776665554221 111223577899999999
Q ss_pred HHHHHhhcCCCCeEEEEeC
Q 012528 247 EEFVAENYTGPRMVLAASG 265 (461)
Q Consensus 247 ~~f~~~~~~~~~~~l~ivG 265 (461)
+++.++++.+++.+++++|
T Consensus 174 ~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 174 QRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHhCCccCeEEEEEe
Confidence 9999999999999998887
No 24
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.97 E-value=0.00014 Score=71.96 Aligned_cols=159 Identities=12% Similarity=0.010 Sum_probs=112.8
Q ss_pred CeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeEEecc------eeEEEEEEccCCCH
Q 012528 98 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR------EQMGYSFDALKTYV 171 (461)
Q Consensus 98 ~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~------~~~~~~~~~~~~~l 171 (461)
+...+.+.+.+....++ ......++..++..|. ...|.+.+...|...+++... ..+.+.+.+.+++.
T Consensus 234 ~q~~~~~~~~~~~~~~~--d~~~l~vl~~iLgg~~----~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (406)
T 3eoq_A 234 RALYLVALFPGVAYQEE--ARFPGQVLAHLLGEEG----SGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARK 307 (406)
T ss_dssp SSEEEEEEEECCCTTCT--THHHHHHHHHHHHCTT----TSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGH
T ss_pred cceEEEEEecCCCCCCc--hHHHHHHHHHHhCCCc----chHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchH
Confidence 56666666665544432 3445566777775432 235666665567655554322 34667777778888
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCHHHHH
Q 012528 172 PEMVELLIDCVRNP---VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLE 247 (461)
Q Consensus 172 ~~~l~ll~~~~~~p---~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it~~~l~ 247 (461)
+++++.+.+.+..- .++++++++.|..++..+....+++...+........+ ..+.. ...-.+.|+++|.++++
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLS--LEEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhCCHHHHH
Confidence 88888887766443 49999999999999999988888888888777776666 43322 12234778999999999
Q ss_pred HHHHhhcCCCCeEEEEeC
Q 012528 248 EFVAENYTGPRMVLAASG 265 (461)
Q Consensus 248 ~f~~~~~~~~~~~l~ivG 265 (461)
++.++++.++++ ++++|
T Consensus 386 ~~a~~~l~~~~~-~~vvG 402 (406)
T 3eoq_A 386 ALLERGFLEKGL-YYLVL 402 (406)
T ss_dssp HHHHTTTTTSCE-EEEEE
T ss_pred HHHHHhcCcccE-EEEEC
Confidence 999999999998 89998
No 25
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.90 E-value=0.0003 Score=69.98 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=113.9
Q ss_pred EEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCC----C-CCHHHHHHHHHHcCCeeeEEec------c
Q 012528 89 KIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----N-RSHLRIVREVEAIGGNVQASAS------R 157 (461)
Q Consensus 89 ~v~~~~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~----~-~s~~~l~~~l~~~g~~~~~~~~------~ 157 (461)
.+.....+.+...+.+.+.+..... .......++.+++..+.. . .....+.+.+...|..+++++. .
T Consensus 222 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~~~~ 299 (431)
T 3cx5_A 222 EVRLRDDTLPKAWISLAVEGEPVNS--PNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDS 299 (431)
T ss_dssp EEEEECTTSSSEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEECSSC
T ss_pred eEEEcCCCCCceEEEEEeecCCCCC--ccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecccCCC
Confidence 3433333445667777777654432 334455677777753210 0 0012455555555654444332 2
Q ss_pred eeEEEEEEccC-CCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHh--hcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012528 158 EQMGYSFDALK-TYVPEMVELLIDCVRNP--VFLDWEVNEQLTKVKSEISE--VSNNPQSLLLEAIHSAGY-SGALANPL 231 (461)
Q Consensus 158 ~~~~~~~~~~~-~~l~~~l~ll~~~~~~p--~f~~~~~~~~k~~~~~el~~--~~~~p~~~~~~~l~~~~~-~~p~~~~~ 231 (461)
..+.+.+.+.+ ++++++++.+.+.+..- .+++++|++.|..++..+.. ..+++...+........+ +.+.. .
T Consensus 300 g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 377 (431)
T 3cx5_A 300 GLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS--L 377 (431)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC--H
T ss_pred ceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC--H
Confidence 34567777777 88888877776544321 59999999999999999988 778888777766665543 43332 1
Q ss_pred CCChhhhccCCHHHHHHHHHhhcCCCCeEEEEeC-CC
Q 012528 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (461)
Q Consensus 232 ~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG-v~ 267 (461)
....+.|+++|.++++++.++++.+++++++++| .+
T Consensus 378 ~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 378 GEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 1234678999999999999999999999999999 54
No 26
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.88 E-value=0.0008 Score=67.25 Aligned_cols=168 Identities=10% Similarity=0.018 Sum_probs=113.4
Q ss_pred cCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcC-----CCCCCCHHHHHHHHH-HcCCeeeEEe------cceeEE
Q 012528 94 TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFR-----STRNRSHLRIVREVE-AIGGNVQASA------SREQMG 161 (461)
Q Consensus 94 ~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~-----gt~~~s~~~l~~~l~-~~g~~~~~~~------~~~~~~ 161 (461)
..+.+...+.+.+++..... .......++..++.. |.+......|.+.+. ..|...+++. ....+.
T Consensus 241 ~~~~~~~~v~~~~~~~~~~~--~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 241 ENTLPTTHIAIALEGVSWSA--PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp CTTCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred cCCccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 33456777877777654332 244455667777742 111122346766676 5565433322 223456
Q ss_pred EEEEcc--CCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012528 162 YSFDAL--KTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (461)
Q Consensus 162 ~~~~~~--~~~l~~~l~ll~~~~---~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (461)
+++.+. +++++++++.+.+.+ .+-.++++++++.|..++..+....+++...+........+ +.+.. .....
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 396 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS--PEEVF 396 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC--HHHHH
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC--HHHHH
Confidence 677777 788988888877655 44459999999999999999988777887666555555433 43332 11234
Q ss_pred hhhccCCHHHHHHHHHhhcCCCCeEEEEeC
Q 012528 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (461)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~ivG 265 (461)
+.|.++|.++++++.++++.+++++++++|
T Consensus 397 ~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 397 EQVDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHHHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 778999999999999999999999999999
No 27
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.82 E-value=0.00061 Score=67.64 Aligned_cols=164 Identities=12% Similarity=0.031 Sum_probs=112.5
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHH-cCCeeeEEecc------eeEEEEEEccC
Q 012528 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA-IGGNVQASASR------EQMGYSFDALK 168 (461)
Q Consensus 96 ~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~-~g~~~~~~~~~------~~~~~~~~~~~ 168 (461)
+.+...+.+.+.+..... .......++..++..|. ....+.+.+.. .|..++++++. ..+.+.+.+.+
T Consensus 239 ~~~~~~v~~~~~~~~~~~--~~~~~~~vl~~iLg~~~---~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~ 313 (424)
T 3amj_B 239 PATQAHIAIGMPTLKRGD--PDFFPLVVGNYALGGGG---FESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRA 313 (424)
T ss_dssp SSSEEEEEEEEEEEBTTC--TTHHHHHHHHHHHTTSG---GGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEES
T ss_pred CCCccEEEeeccCCCCCC--cchHHHHHHHHHhCCCC---ccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCc
Confidence 346677777777544332 34445566777764320 12356666654 56655554321 34667777788
Q ss_pred CCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHH
Q 012528 169 TYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 245 (461)
Q Consensus 169 ~~l~~~l~ll~~~~~---~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~ 245 (461)
++.+++++.+.+.+. +-.++++++++.|..++..+.....++...+........++.+... .....+.|+++|.++
T Consensus 314 ~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~d 392 (424)
T 3amj_B 314 EKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDY-LDHYTERVQAVTVEQ 392 (424)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTT-TTSHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHcCCHHH
Confidence 888888888776664 3348999999999999998887777887776666544433434322 122457899999999
Q ss_pred HHHHHHhhcCCCCeEEEEeC
Q 012528 246 LEEFVAENYTGPRMVLAASG 265 (461)
Q Consensus 246 l~~f~~~~~~~~~~~l~ivG 265 (461)
++++.++++.+++++++++|
T Consensus 393 v~~~a~~~l~~~~~~~~~~~ 412 (424)
T 3amj_B 393 VREAFARHVKRENLITVVVG 412 (424)
T ss_dssp HHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHhcCccceEEEEEC
Confidence 99999999999999999999
No 28
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.82 E-value=0.00012 Score=72.80 Aligned_cols=164 Identities=9% Similarity=-0.020 Sum_probs=113.6
Q ss_pred CCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHH-cCCeeeEEec------ceeEEEEEEcc
Q 012528 95 SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA-IGGNVQASAS------REQMGYSFDAL 167 (461)
Q Consensus 95 ~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~-~g~~~~~~~~------~~~~~~~~~~~ 167 (461)
.+.+...+.+.+.+..... .......++..++..|. ...|.+.+.. .|..++++.. ...+.++..+.
T Consensus 230 ~~~~q~~v~~~~~~~~~~~--~d~~~l~vl~~iLgg~~----~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~ 303 (421)
T 3hdi_A 230 KETEQAHLCLGYPGLPIGD--KDVYALVLLNNVLGGSM----SSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTG 303 (421)
T ss_dssp CCCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHTSSS----SSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEE
T ss_pred CCCCceEEEEEEecCCCCC--chHHHHHHHHHHhCCCc----ccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeC
Confidence 4456777777777644432 34455667777775432 2356666653 4654444332 23456777777
Q ss_pred CCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCH
Q 012528 168 KTYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNS 243 (461)
Q Consensus 168 ~~~l~~~l~ll~~~~~---~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it~ 243 (461)
+++.+++++.+.+.+. +-.++++++++.|..++..+....+++...+........+ +.+. ....-.+.|+++|.
T Consensus 304 ~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vt~ 381 (421)
T 3hdi_A 304 HDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHR--SLDEMIEQINAVQK 381 (421)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCC--CHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHcCCH
Confidence 7888888888876654 3459999999999999999988888888777766555555 3221 11123477899999
Q ss_pred HHHHHHHHhhcCCCCeEEEEeC-CC
Q 012528 244 TLLEEFVAENYTGPRMVLAASG-VE 267 (461)
Q Consensus 244 ~~l~~f~~~~~~~~~~~l~ivG-v~ 267 (461)
++++++.++++ +++++++++| .+
T Consensus 382 ~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 382 QDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHHHHHc-ccCcEEEEECchh
Confidence 99999999999 9999999999 64
No 29
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.79 E-value=0.00054 Score=68.70 Aligned_cols=169 Identities=11% Similarity=0.021 Sum_probs=111.5
Q ss_pred cCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCC-----CCCCCHHHHHHHHHHcCCeeeEEec------ceeEEE
Q 012528 94 TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-----TRNRSHLRIVREVEAIGGNVQASAS------REQMGY 162 (461)
Q Consensus 94 ~~~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~g-----t~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~ 162 (461)
+.+.+...+.+.+++..... .......++.+++..+ .+.-....|.+.+...|+..+++.. ...+.+
T Consensus 245 ~~~~~~~~v~~~~~~~~~~~--~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i 322 (446)
T 1pp9_A 245 EDGLPLAHVAIAVEGPGWAH--PDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGA 322 (446)
T ss_dssp ETTSSSEEEEEEEEECCTTC--THHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEE
T ss_pred cCCccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEE
Confidence 33345666666666554433 2344556777777421 0011123566666556654433321 234566
Q ss_pred EEEccCCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhh
Q 012528 163 SFDALKTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAI 238 (461)
Q Consensus 163 ~~~~~~~~l~~~l~ll~~~~---~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l 238 (461)
.+.+.+++.+++++.+.+.+ .+. ++++++++.|..++..+....++|...+........+ +.+.. ...-.+.|
T Consensus 323 ~~~~~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i 399 (446)
T 1pp9_A 323 HFVCDHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP--LAEWESRI 399 (446)
T ss_dssp EEEECTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC--HHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Confidence 77777788888888876654 334 9999999999999999988778887776665555533 43322 11234678
Q ss_pred ccCCHHHHHHHHHhhcCCCCeEEEEeC-CC
Q 012528 239 NRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (461)
Q Consensus 239 ~~it~~~l~~f~~~~~~~~~~~l~ivG-v~ 267 (461)
.++|.++++++.++++.+++++++++| .+
T Consensus 400 ~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 400 AEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 999999999999999999999999999 53
No 30
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.72 E-value=0.0016 Score=65.91 Aligned_cols=167 Identities=14% Similarity=0.065 Sum_probs=112.3
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCC-------CCCCCHHHHHHHHH-HcCCeeeEEec------ceeEE
Q 012528 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-------TRNRSHLRIVREVE-AIGGNVQASAS------REQMG 161 (461)
Q Consensus 96 ~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~g-------t~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~ 161 (461)
+.+...+.+.+.+..... .......++..++..| .+.--...|.+.+. ..|...+++.. ...+.
T Consensus 240 ~~~~~~v~~~~~~~~~~~--~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~ 317 (475)
T 1hr6_A 240 LPELFHIQIGFEGLPIDH--PDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFG 317 (475)
T ss_dssp SCCCEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEE
Confidence 345667777777544332 2334455677776432 11111245666653 45664444332 23466
Q ss_pred EEEEccCCCHHHHHHHHHHhhhCC------CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 012528 162 YSFDALKTYVPEMVELLIDCVRNP------VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (461)
Q Consensus 162 ~~~~~~~~~l~~~l~ll~~~~~~p------~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~ 234 (461)
+.+.+.++++.++++.+...+..- .+++++|++.|..++..+....+++...+........+ +.+.. ...-
T Consensus 318 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~ 395 (475)
T 1hr6_A 318 ISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP--VNEM 395 (475)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC--HHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC--HHHH
Confidence 777888889999988887766542 38999999999999999988778888776666665544 44432 1123
Q ss_pred hhhhccCCHHHHHHHHHhhcCC---------CCeEEEEeC-C
Q 012528 235 ESAINRLNSTLLEEFVAENYTG---------PRMVLAASG-V 266 (461)
Q Consensus 235 ~~~l~~it~~~l~~f~~~~~~~---------~~~~l~ivG-v 266 (461)
.+.|+++|.++++++.++++.+ .+++++++| .
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 396 ISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 4778999999999999999987 589999999 5
No 31
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.63 E-value=0.00057 Score=68.03 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=108.0
Q ss_pred CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCC-CCCCCHHHHHHHHHHc-CCeeeEEec------ceeEEEEEEccC
Q 012528 97 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-TRNRSHLRIVREVEAI-GGNVQASAS------REQMGYSFDALK 168 (461)
Q Consensus 97 ~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~g-t~~~s~~~l~~~l~~~-g~~~~~~~~------~~~~~~~~~~~~ 168 (461)
.+...+.+.+.+..... .......++..++..| .. ..+.+.+... |+.++++++ ...+.+++.+.+
T Consensus 247 ~~~~~v~~~~~~~~~~~--~d~~~l~vl~~iLg~~~~~----s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~ 320 (434)
T 3gwb_A 247 SSQTSLMLAQLGIDRDD--PDYAAVSLGNQILGGGGFG----TRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRA 320 (434)
T ss_dssp SSEEEEEEEEECCBTTC--TTHHHHHHHHHHHHSSSSC----SHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEG
T ss_pred CCceeEEecCcCCCCCC--cchHHHHHHHHHhCCCccc----chhHHHHHhhcCCcceeeeecccCCCceeEEEEEecch
Confidence 35666666666554433 2334556677776433 22 2566666543 554444332 234667778888
Q ss_pred CCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHH
Q 012528 169 TYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 245 (461)
Q Consensus 169 ~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~ 245 (461)
++.+++++.+.+.+.+ -.++++++++.|..++..+....+++...+........++.+... ...-.+.|+++|.++
T Consensus 321 ~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~d 399 (434)
T 3gwb_A 321 EMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSY-LEDFMRQSQELTVEQ 399 (434)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTH-HHHHHHHHHHCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHhCCHHH
Confidence 8888888877776643 358999999999999999988888888877766665444333211 112347789999999
Q ss_pred HHHHHHhhcCCCCeEEEEeC
Q 012528 246 LEEFVAENYTGPRMVLAASG 265 (461)
Q Consensus 246 l~~f~~~~~~~~~~~l~ivG 265 (461)
++++.++++.+++++++++|
T Consensus 400 v~~~a~~~l~~~~~~~~vvg 419 (434)
T 3gwb_A 400 VKAAMNKHLNVDKMVIVSAG 419 (434)
T ss_dssp HHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHhcChhhEEEEEEc
Confidence 99999999999999999999
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.47 E-value=0.0038 Score=62.06 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=110.1
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCC----CCCCHHHHHHHHH-HcCCeeeEEec------ceeEEEEE
Q 012528 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST----RNRSHLRIVREVE-AIGGNVQASAS------REQMGYSF 164 (461)
Q Consensus 96 ~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt----~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~ 164 (461)
+.+...+.+.+.+..... .......++.+++..|. +.--...+.+.+. ..|..++++++ ...+.+.+
T Consensus 249 ~~~~~~v~~~~~~~~~~~--~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~ 326 (439)
T 1pp9_B 249 GDSLVHAALVAESAAIGS--AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYT 326 (439)
T ss_dssp CCSEEEEEEEEECCCTTS--HHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEE
T ss_pred CccceEEEEEecCCCCCc--hHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEE
Confidence 456677777777544332 23344556777764321 0001245666665 55655444332 23355677
Q ss_pred EccCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcc
Q 012528 165 DALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINR 240 (461)
Q Consensus 165 ~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~ 240 (461)
.+.+++++++++.+.+.+.. -.++++++++.|..++..+....+++...+........+ +.+.. ...-.+.|++
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 404 (439)
T 1pp9_B 327 ISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTP--PSTVLQQIDA 404 (439)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhc
Confidence 77778888888887766643 458999999999999999988778888777666665555 43321 1223477899
Q ss_pred CCHHHHHHHHHhhcCCCCeEEEEeC
Q 012528 241 LNSTLLEEFVAENYTGPRMVLAASG 265 (461)
Q Consensus 241 it~~~l~~f~~~~~~~~~~~l~ivG 265 (461)
+|.++++++.++++. .+++++++|
T Consensus 405 vt~~dv~~~a~~~~~-~~~~~~v~g 428 (439)
T 1pp9_B 405 VADADVINAAKKFVS-GRKSMAASG 428 (439)
T ss_dssp CCHHHHHHHHHHHHH-SCEEEEEEE
T ss_pred CCHHHHHHHHHHHhc-CCceEEEEC
Confidence 999999999999988 899999999
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.38 E-value=0.0018 Score=64.83 Aligned_cols=162 Identities=10% Similarity=-0.033 Sum_probs=104.6
Q ss_pred EEEEEEEcccc---cCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHH-HHcCCeeeEEe--c---c---eeEEEEEEcc
Q 012528 100 ASISLYVGCGS---IYESPISFGTTHLLERMAFRSTRNRSHLRIVREV-EAIGGNVQASA--S---R---EQMGYSFDAL 167 (461)
Q Consensus 100 ~~i~l~i~~G~---~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l-~~~g~~~~~~~--~---~---~~~~~~~~~~ 167 (461)
..+.+.+.+.. .... ...-...++..++..|. ...|.+.+ +..|...++++ . . ..+.+++.+.
T Consensus 245 ~~v~l~~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~----~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~ 319 (445)
T 3ami_A 245 PYLALAWHVPAIVDLDKS-RDAYALEILAAVLDGYD----GARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPS 319 (445)
T ss_dssp CEEEEEEEECCCSSTTCC-HHHHHHHHHHHHHHSST----TCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEEC
T ss_pred cEEEEEEEcCCcccccCC-hhHHHHHHHHHHHcCCc----chHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEEC
Confidence 34555555544 2211 22334456667765432 23566655 35666544443 1 2 2345666666
Q ss_pred CC-CHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCH
Q 012528 168 KT-YVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNS 243 (461)
Q Consensus 168 ~~-~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~ 243 (461)
++ +.+++++.+...+.. --++++++++.|+.++..+....+++...+........++.+... ...-.+.|+++|.
T Consensus 320 ~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~i~~vt~ 398 (445)
T 3ami_A 320 KGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRD-DDRFYQQLRSVTA 398 (445)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTH-HHHHHHHHHTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHH-HHHHHHHHHcCCH
Confidence 66 488888877665543 238999999999999999988778887776665555544322211 1123467899999
Q ss_pred HHHHHHHHhhcCCCCeEEEEeC-CC
Q 012528 244 TLLEEFVAENYTGPRMVLAASG-VE 267 (461)
Q Consensus 244 ~~l~~f~~~~~~~~~~~l~ivG-v~ 267 (461)
+++.++.++++.+++++++++| -.
T Consensus 399 ~dv~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 399 AEVKAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp HHHHHHHHTTSCSTTEEEEEEEEEC
T ss_pred HHHHHHHHHHcCcCCeEEEEEccCc
Confidence 9999999999999999999999 54
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.19 E-value=0.0053 Score=60.61 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=105.1
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHH-cCCeeeEEec----ceeEEEEEEccCCC
Q 012528 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA-IGGNVQASAS----REQMGYSFDALKTY 170 (461)
Q Consensus 96 ~~~~~~i~l~i~~G~~~e~~~~~g~a~ll~~~~~~gt~~~s~~~l~~~l~~-~g~~~~~~~~----~~~~~~~~~~~~~~ 170 (461)
+.+...+.+.+.++.... ........++.+++..|. ...|.+.+.. .|..++++.+ ...+.+++.+.+++
T Consensus 251 ~~~~~~v~~~~~~~~~~~-~~~~~~~~vl~~iLg~~~----~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~ 325 (425)
T 3d3y_A 251 VLAQSKLNLAYNTDIYYG-DSYYFALQVFNGIFGGFP----HSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKN 325 (425)
T ss_dssp ECSSEEEEEEEECCCCTT-STTHHHHHHHHHHHTTST----TSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGG
T ss_pred CccccEEEEEeecCCCCC-CchHHHHHHHHHHhCCCh----hhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhh
Confidence 345666667676653222 234456677778875432 2356666653 4655444432 23466777777788
Q ss_pred HHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCHHHH
Q 012528 171 VPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLL 246 (461)
Q Consensus 171 l~~~l~ll~~~~~---~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it~~~l 246 (461)
++++++.+.+.+. +-.++++++++.|..++..+....+++...+........+ +.+. ....-.+.|+++|.+++
T Consensus 326 ~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~i~~vt~edv 403 (425)
T 3d3y_A 326 RNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTML--TAEEWIARINAVTIPEI 403 (425)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCC--CHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHhCCHHHH
Confidence 8888887766553 3358999999999999999988778888777766665554 3332 12223467899999999
Q ss_pred HHHHHhhcCCCCeEEEEeC
Q 012528 247 EEFVAENYTGPRMVLAASG 265 (461)
Q Consensus 247 ~~f~~~~~~~~~~~l~ivG 265 (461)
+++.++++ +++.. +++|
T Consensus 404 ~~~a~~~~-~~~~~-~v~g 420 (425)
T 3d3y_A 404 QEVAKRLE-LQAIF-FLEG 420 (425)
T ss_dssp HHHHHHCE-EEEEE-EEEE
T ss_pred HHHHHhcc-CceEE-EEeC
Confidence 99999865 44444 4444
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.64 E-value=0.026 Score=57.26 Aligned_cols=162 Identities=11% Similarity=0.079 Sum_probs=95.6
Q ss_pred cCCCCeEEEEEEEcccccCCCCCCCc-----HHHHHHHhhcCCCCCCCHHHHHHHHHH---cCCeeeEEe----cceeEE
Q 012528 94 TSVSPVASISLYVGCGSIYESPISFG-----TTHLLERMAFRSTRNRSHLRIVREVEA---IGGNVQASA----SREQMG 161 (461)
Q Consensus 94 ~~~~~~~~i~l~i~~G~~~e~~~~~g-----~a~ll~~~~~~gt~~~s~~~l~~~l~~---~g~~~~~~~----~~~~~~ 161 (461)
+.+.+...+.+.+++.....++ ... ...++..+++ ..+...+.. .|...+++. .++...
T Consensus 261 ~~~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg--------~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~ 331 (492)
T 3go9_A 261 NEQAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALF--------WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCA 331 (492)
T ss_dssp ESSCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHSCCTTCEEEEEEEEETTEEEEE
T ss_pred cCCCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccccccccCchhhhhhcceE
Confidence 3344555666666655443322 111 1244555553 144444443 454444332 344556
Q ss_pred EEEEccCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHhcCCCCCCCCC-
Q 012528 162 YSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVS-----NNPQSLLLEAIHSAGYSGALANPLL- 232 (461)
Q Consensus 162 ~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~el~~~~-----~~p~~~~~~~l~~~~~~~p~~~~~~- 232 (461)
+.+.+..++.+++++.+...+.. --++++++++.|..++..+.... .++...+...+........+..+..
T Consensus 332 ~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (492)
T 3go9_A 332 IHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQY 411 (492)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHH
T ss_pred EEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHH
Confidence 77778888888888887776543 34899999999999999876542 2344444554444433333222210
Q ss_pred -CC-hhhhccCCHHHHHHHHHhhcCCCCeEEEEeC
Q 012528 233 -AP-ESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (461)
Q Consensus 233 -~~-~~~l~~it~~~l~~f~~~~~~~~~~~l~ivG 265 (461)
.. .+.|+++|.+++.++.++++.+++. +++||
T Consensus 412 ~~~~~~~i~~vT~edV~~~a~~~l~~~~~-~vvvg 445 (492)
T 3go9_A 412 QKLRQAFLSGLTLAELNRELKQQLSQDTT-LVLMQ 445 (492)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCE-EEEEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCCCCe-EEEEc
Confidence 01 1448899999999999999987544 45554
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=93.64 E-value=2.3 Score=40.25 Aligned_cols=122 Identities=8% Similarity=-0.016 Sum_probs=79.8
Q ss_pred CceEEEEEeecCCCCCCCchhHHHHHHHHhhCCCCCCCCCCCCCCccc-HhHHHHHhhCCCeEEEEeeccccCCcceEEE
Q 012528 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYS-RLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 387 (461)
Q Consensus 309 ~~~~v~l~~~~~~~~~~~~d~~~~~vl~~lL~~~~~fs~ggpgkg~~s-rL~~~lRe~~g~~Y~~~a~~~~~~~~~~~~i 387 (461)
+...+.+.+.+.. ..+.+.....++..++..|.. .+.. .+. +..+..|..++++... -...+
T Consensus 11 ~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt~--------~~~~~~l~-~~l~~~G~~~na~t~~------~~t~~ 73 (352)
T 3cx5_B 11 KISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNTN--------TRSALKLV-RESELLGGTFKSTLDR------EYITL 73 (352)
T ss_dssp SEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCBS--------SSCHHHHH-HHHHHHTCEEEEEECS------SCEEE
T ss_pred ceEEEEEEEeeec--cCCCcccHHHHHHHHhccCcC--------CCCHHHHH-HHHHHhCCeEEEEEcc------ceEEE
Confidence 4555555555443 344455667777777754311 1112 233 3345556655444321 24567
Q ss_pred EEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012528 388 QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLD-RAKQSTKSAILMNLESRMVVSEDIGRQVL 451 (461)
Q Consensus 388 ~~~~~p~~~~~~i~~~~~~l~~l~~~g~~s~~el~-~ak~~~~~~~~~~~~s~~~~~~~i~~~~~ 451 (461)
++.+.+++++.+++.+.+.+... .+++++|+ +.|..++..+.+..+++..++.+.....+
T Consensus 74 ~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 134 (352)
T 3cx5_B 74 KATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAIT 134 (352)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred EEEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 77888888999999888877665 38999998 99999999999888888887766655555
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.48 E-value=51 Score=19.96 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHH
Q 012528 401 DLAARELISVATPGEVDQVQLDRAKQ 426 (461)
Q Consensus 401 ~~~~~~l~~l~~~g~~s~~el~~ak~ 426 (461)
..+..++..++++| ++.+|+.....
T Consensus 3 aalkselqalkkeg-fspeelaales 27 (48)
T 1g6u_A 3 AALKSELQALKKEG-FSPEELAALES 27 (48)
T ss_dssp HHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 45678888999998 99999875443
No 38
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=22.15 E-value=1.9e+02 Score=20.05 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCeeeEEecceeEEEEEEccCCCHHHHHHHHHHhhhC
Q 012528 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRN 184 (461)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~ 184 (461)
..+.+.++..|+.+.-....+...+.+..+.++.+.+.+.|.+....
T Consensus 20 g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~G 66 (76)
T 3lh2_S 20 TGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSGG 66 (76)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhCC
Confidence 34677889999988777777889999999999999998888887653
No 39
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=20.43 E-value=1.2e+02 Score=22.34 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=44.5
Q ss_pred hcCCCCCCCHHHHHHHHHHcCCeeeEEecceeEE-EEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 012528 128 AFRSTRNRSHLRIVREVEAIGGNVQASASREQMG-YSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197 (461)
Q Consensus 128 ~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~ 197 (461)
.+.|+-..++.++...++.+|+.+..+++..... +.+.....++..+.++ -=|.+++++|-....
T Consensus 14 v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~l-----gI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 14 VITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL-----GVPTLTEEELYRLLE 79 (92)
T ss_dssp ECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCS-----SSCCEEHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHc-----CCcEEeHHHHHHHHH
Confidence 3556554588999999999999999888764333 3334445677777654 346678877766553
Done!