BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012529
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 143/439 (32%), Positives = 222/439 (50%), Gaps = 30/439 (6%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIW 87
G + +AGWV T F+ + D + + +Q V+ + G + K+ + +S+
Sbjct: 16 GKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESSVI 73
Query: 88 IQGNVVPSQGSKQKVELKVNKI-VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
++G V + + E+ V K+ V+ S+ P ++ S E L HL RT A
Sbjct: 74 VEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASA 133
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS--REAAESPV 204
+ +V+ L A ++ ++G+ + PI+ EG F + + ++A+ +
Sbjct: 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYL 193
Query: 205 DAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYL 264
+A + +V++ P+FRAE S T RHL EFW +E E A+ DL D M +
Sbjct: 194 EA------AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELV 247
Query: 265 QYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV--AERDFVQLSYTDAIELLIKAKKKFE 322
Y+V+ L+ K++++ F D L+T+ E F ++SY +AI++L
Sbjct: 248 SYMVQRTLELRKKEIEMFR--------DDLTTLKNTEPPFPRISYDEAIDILQSKGVN-- 297
Query: 323 FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPR 381
V+WG DL ++ ER LTEE P V YPK IKAFYM+++ +D R V A DML P
Sbjct: 298 --VEWGDDLGADEERVLTEEF--DRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPE 353
Query: 382 -IGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 440
GE+IGGSQ ++ Y WYLDLR YGSVPH+GFGLG ERLV +
Sbjct: 354 GYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWV 413
Query: 441 TGVENIRDAIPFPRTPGSV 459
+++IR A FPRTP +
Sbjct: 414 LKLDHIRWAALFPRTPARL 432
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 214/449 (47%), Gaps = 52/449 (11%)
Query: 29 GLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G ++ GW +R A+ ++ F+E+ DGS QCV+ E + K L+T S+
Sbjct: 30 GKLVTFKGWAYHIRKARKTLIFVELRDGS--GYCQCVIFG-KELCEPEKVKLLTRECSLE 86
Query: 88 IQG--------NVVPSQGSKQKVELKVNKIVLVGKS--DPSYPIQKKRVSREFLRTKAHL 137
I G N P +E++V + ++G+S D I K + ++ + H+
Sbjct: 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNR-HI 145
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------TT 191
R+ V ++R+ + + K++ +N F I P I + CEG F +
Sbjct: 146 VIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAY 205
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251
L SS+ ES + ++ K+ + ++RAE S T RHLAE+ +E EL F
Sbjct: 206 LTQSSQLYLESVIASLGKS----------FCMLSSYRAEQSRTVRHLAEYLHLEAELPFI 255
Query: 252 DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311
+D + +L+ +V ++DN M I K ++ + R F +++Y DAI
Sbjct: 256 SFEDLLN----HLEDLVCTVIDNV---MAVHGDKIRK--MNPHLKLPTRPFKRMTYADAI 306
Query: 312 EL-----LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 366
+ ++ K FE+ G D+ + ER +T+E GCP+ + +P ++KAFYM +
Sbjct: 307 KYCNDHGILNKDKPFEY----GEDISEKPERQMTDEI--GCPIFMIHFPSKMKAFYMSKV 360
Query: 367 DDGRTVA-AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVP 425
+ ++D+L+P +GE++GGS LN D Y+WY R YGS P
Sbjct: 361 PGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCP 420
Query: 426 HAGFGLGFERLVQFATGVENIRDAIPFPR 454
H G+GLG ERLV + G ++IR +PR
Sbjct: 421 HGGYGLGVERLVMWLLGEDHIRKVCLYPR 449
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/434 (27%), Positives = 199/434 (45%), Gaps = 26/434 (5%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + D E + + + + +
Sbjct: 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK--LRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTF 144
++G V + +K E+ KIV++ +++ P+ + L T+ + R R
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLRRPEV 133
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV 204
A+ ++R+++ A FF ENGFI I +P I A+ EG E F + + AESP
Sbjct: 134 MAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAF-LAESP- 191
Query: 205 DAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAY 263
+ K +VY P FRAE NT+RHL E W I+ E+AF D ++ M+
Sbjct: 192 -QLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERL 250
Query: 264 LQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 323
+ + + Y+ ++ +++D N +E+ + F ++SY A+E+L K+
Sbjct: 251 VAHAINYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKE--- 298
Query: 324 LVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP 380
+ WG D+ +E ER L + E + YP E K FY+ + D+ + L
Sbjct: 299 -IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEY 357
Query: 381 RIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 440
R E+ G Q LN +S+ +YL YG PH GFGLG ERL++
Sbjct: 358 RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQM 417
Query: 441 TGVENIRDAIPFPR 454
+ NIR+ I FPR
Sbjct: 418 LDLPNIREVILFPR 431
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 196/434 (45%), Gaps = 26/434 (5%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + D E + + + + +
Sbjct: 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK--LRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTF 144
++G V + +K E+ KIV++ +++ P+ + L T+ R R
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEV 133
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV 204
A+ ++R+++ A FF ENGFI I +P I A+ EG E F + + A +
Sbjct: 134 MAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQL 193
Query: 205 DAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAY 263
GL +VY P FRAE NT+RHL E W I+ E+AF D ++ M+
Sbjct: 194 YKQIMMASGL---DRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERL 250
Query: 264 LQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 323
+ + + Y+ ++ +++D N +E+ + F ++SY A+E+L K+
Sbjct: 251 VAHAINYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKE--- 298
Query: 324 LVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP 380
+ WG D+ +E ER L + E + YP E K FY+ + D+ + L
Sbjct: 299 -IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEY 357
Query: 381 RIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 440
R E+ G Q LN +S+ +YL YG PH GFGLG ERL++
Sbjct: 358 RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQM 417
Query: 441 TGVENIRDAIPFPR 454
+ NIR+ I FPR
Sbjct: 418 LDLPNIREVILFPR 431
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 199/431 (46%), Gaps = 29/431 (6%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G ++ AGWV LR FI + D + L + S A G Q +T + I +
Sbjct: 16 GKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNSSAFGISQE----LTQESVIQV 71
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRP---RTNTFG 145
+G V + + + +EL +I L+ K+ P+ + + T+ R R
Sbjct: 72 RGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQ 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA--AESP 203
AV ++++ A + + GFI I +P I AS EG + F V +EA A+SP
Sbjct: 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYF---GKEAFLAQSP 188
Query: 204 VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAY 263
+ G+++ +V+ P +RAE S+T HLAEF ++ E+AFAD D M
Sbjct: 189 -QLYKELMAGVVE--RVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKI 245
Query: 264 LQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 323
L +V+ I + KE++ N + I +L YT+AIE+L + +
Sbjct: 246 LHNIVKTIKEEGKEELKILNYEPPEVKIP---------IKRLKYTEAIEIL----RSKGY 292
Query: 324 LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIG 383
+K+G D+ + R L EE IV D+P + + FY + + ++ L+ +
Sbjct: 293 NIKFGDDIGTPELRILNEELKEDLYFIV-DWPSDARPFYTKSKSENPELSESFDLIYKFL 351
Query: 384 ELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443
E++ GS L +S+ ++L YG PHAGFG+G RL+ TG+
Sbjct: 352 EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGI 411
Query: 444 ENIRDAIPFPR 454
+++++ +PFPR
Sbjct: 412 QSVKEIVPFPR 422
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/443 (27%), Positives = 203/443 (45%), Gaps = 42/443 (9%)
Query: 32 IVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ + GW+ +R Q S+ F + DG+ + +M + YD + + T ++ I G
Sbjct: 14 VCIKGWIHRMRRQGKSLMFFILRDGTGFLQV-LLMDKLCQTYDALT---VNTECTVEIYG 69
Query: 91 NV--VPS-QGSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFG 145
+ VP + + EL + ++G + P + + S + + HL R
Sbjct: 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA 129
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------TTLIPSSREA 199
A+ R+R A A + F G++ ++ P + + EG F + + L SS+
Sbjct: 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLY 189
Query: 200 AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 259
E+ IP D V+ ++RAE S T RHLAE+ +E E F L D M
Sbjct: 190 LET---CIPTLGD-------VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEK 239
Query: 260 ATAYLQYVVRYIL--DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 317
+ V +L + K+ ++ N + ER F+++ Y DAI+ L +
Sbjct: 240 IEELVCDTVDRLLADEEAKKLLEHINPKFQP---------PERPFLRMEYKDAIKWLQEH 290
Query: 318 KKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYM-RQNDDGRTVAA 374
+ EF +G D+ ER++T+ P++++ +P EIKAFYM R D +
Sbjct: 291 NVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILLNRFPSEIKAFYMQRDAQDNTLTES 348
Query: 375 MDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFE 434
+D+L+P +GE++GGS +++ Y+WYLD R YG+ PH G+GLG E
Sbjct: 349 VDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLE 408
Query: 435 RLVQFATGVENIRDAIPFPRTPG 457
R + + T +IRD +PR G
Sbjct: 409 RFICWLTNTNHIRDVCLYPRFVG 431
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/443 (27%), Positives = 203/443 (45%), Gaps = 42/443 (9%)
Query: 32 IVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ + GW+ +R Q S+ F + DG+ + +M + YD + + T ++ I G
Sbjct: 16 VCIKGWIHRMRRQGKSLMFFILRDGTGFLQV-LLMDKLCQTYDALT---VNTECTVEIYG 71
Query: 91 NV--VPS-QGSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFG 145
+ VP + + EL + ++G + P + + S + + HL R
Sbjct: 72 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------TTLIPSSREA 199
A+ R+R A A + F G++ ++ P + + EG F + + L SS+
Sbjct: 132 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLY 191
Query: 200 AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 259
E+ IP D V+ ++RAE S T RHLAE+ +E E F L D M
Sbjct: 192 LET---CIPTLGD-------VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEK 241
Query: 260 ATAYLQYVVRYIL--DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 317
+ V +L + K+ ++ N + ER F+++ Y DAI+ L +
Sbjct: 242 IEELVCDTVDRLLADEEAKKLLEHINPKFQP---------PERPFLRMEYKDAIKWLQEH 292
Query: 318 KKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYM-RQNDDGRTVAA 374
+ EF +G D+ ER++T+ P++++ +P EIKAFYM R D +
Sbjct: 293 NVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILLNRFPSEIKAFYMQRDAKDNTLTES 350
Query: 375 MDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFE 434
+D+L+P +GE++GGS +++ Y+WYLD R YG+ PH G+GLG E
Sbjct: 351 VDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLE 410
Query: 435 RLVQFATGVENIRDAIPFPRTPG 457
R + + T +IRD +PR G
Sbjct: 411 RFICWLTNTNHIRDVCLYPRFVG 433
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 182/409 (44%), Gaps = 33/409 (8%)
Query: 58 LSNMQCVMTSDAEGYDQVKSG---LITTGASIWIQGNVVPSQGSKQKVELKVNKI-VLVG 113
L +Q ++ D G QV +G L +++ ++G VV + + +E++ ++ VL
Sbjct: 28 LGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSP 87
Query: 114 KSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWI 170
+P+ P ++ R + + L ++ R A +V+ AL ++ F I
Sbjct: 88 ALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEI 147
Query: 171 SSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230
+P + + EG F V + A+SP + G+ + +VY P +R E
Sbjct: 148 FTPKVVRAGAEGGSGLFGVDYFEKRAY-LAQSP-QLYKQIMVGVFE--RVYEVAPVWRME 203
Query: 231 NSNTSRHLAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFN-TWIEK 288
+TSRHL E+ ++ E+ F AD +D M A L ++ L+ +++ TW
Sbjct: 204 EHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW--- 260
Query: 289 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFG 345
+D +L++ +A +L K E G DL E ER L E E +G
Sbjct: 261 -------PSFPQDIPRLTHAEAKRIL-----KEELGYPVGQDLSEEAERLLGEYAKERWG 308
Query: 346 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXX 405
+ V+ YP+ ++ FY +DG T + D+L R E+ G Q
Sbjct: 309 SDWLFVTRYPRSVRPFYTYPEEDG-TTRSFDLLF-RGLEITSGGQRIHRYEELLESLKAK 366
Query: 406 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
++ +++ YL++ YG PH GF +G ERL Q G+ N+R A FPR
Sbjct: 367 GMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPR 415
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 210/493 (42%), Gaps = 76/493 (15%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+K++K VD+ +E D ++ A T + +++ F+ + + L +Q ++ ++
Sbjct: 24 QKRVKFVDL----DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKAN 77
Query: 69 AEGY---DQVK-SGLITTGASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSY 119
EG + VK +G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 78 KEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 137
Query: 120 PIQKKRVSREFLRTKAHLRP---------------RTNTFGAVARVRNALAYATHKFFQE 164
PI + SR +A P RT T A+ R++ + ++
Sbjct: 138 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 197
Query: 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFG 224
F + +P + + EG F VT A+SP K + + D+ +VY G
Sbjct: 198 KKFTEVHTPKLLGAPSEGGSSVFEVT-YFKGKAYLAQSP--QFNKQQLIVADFERVYEIG 254
Query: 225 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 284
P FRAENSNT RH+ EF ++ E+AF + + +LD E F +
Sbjct: 255 PVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE--------------VLDTLSELFVFIFS 300
Query: 285 WIEKGIIDRLSTVAER------------DFVQLSYTDAIELLIKAKKK---FEFLVKWGC 329
+ K + V ++ V+L+Y + IE+L A K+ FE
Sbjct: 301 ELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFE------- 353
Query: 330 DLQSEHERY---LTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGEL 385
DL +E+E++ L + + I+ +P EI+ FY M + + + D + R E+
Sbjct: 354 DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFM-RGEEI 412
Query: 386 IGGSQXXXXXXXXXXXXXXXKLNRDSYWW--YLDLRHYGSVPHAGFGLGFERLVQFATGV 443
+ G+Q L+ + Y D YG PHAG G+G ER+V F +
Sbjct: 413 LSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDL 472
Query: 444 ENIRDAIPFPRTP 456
+NIR A FPR P
Sbjct: 473 KNIRRASLFPRDP 485
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 210/493 (42%), Gaps = 76/493 (15%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+K++K VD+ +E D ++ A T + +++ F+ + + L +Q ++ ++
Sbjct: 21 QKRVKFVDL----DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKAN 74
Query: 69 AEGY---DQVK-SGLITTGASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSY 119
EG + VK +G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 75 KEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 134
Query: 120 PIQKKRVSREFLRTKAHLRP---------------RTNTFGAVARVRNALAYATHKFFQE 164
PI + SR +A P RT T A+ R++ + ++
Sbjct: 135 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 194
Query: 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFG 224
F + +P + + EG F VT A+SP K + + D+ +VY G
Sbjct: 195 KKFTEVHTPKLLGAPSEGGSSVFEVT-YFKGKAYLAQSP--QFNKQQLIVADFERVYEIG 251
Query: 225 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 284
P FRAENSNT RH+ EF ++ E+AF + + +LD E F +
Sbjct: 252 PVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE--------------VLDTLSELFVFIFS 297
Query: 285 WIEKGIIDRLSTVAER------------DFVQLSYTDAIELLIKAKKK---FEFLVKWGC 329
+ K + V ++ V+L+Y + IE+L A K+ FE
Sbjct: 298 ELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFE------- 350
Query: 330 DLQSEHERY---LTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGEL 385
DL +E+E++ L + + I+ +P EI+ FY M + + + D + R E+
Sbjct: 351 DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFM-RGEEI 409
Query: 386 IGGSQXXXXXXXXXXXXXXXKLNRDSYWW--YLDLRHYGSVPHAGFGLGFERLVQFATGV 443
+ G+Q L+ + Y D YG PHAG G+G ER+V F +
Sbjct: 410 LSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDL 469
Query: 444 ENIRDAIPFPRTP 456
+NIR A FPR P
Sbjct: 470 KNIRRASLFPRDP 482
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 144/332 (43%), Gaps = 39/332 (11%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RT T A+ R+++A +F F+ I +P + EG F V R+A
Sbjct: 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYF---DRKA 292
Query: 200 --AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 257
A+SP + K + D+ +V+ GP FRAENSNT RHL EF ++ E+ ++ ++
Sbjct: 293 YLAQSP--QLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEM---EIVENY 347
Query: 258 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE---------RDFVQLSYT 308
++ + +I D I K D L + + R F++L+Y
Sbjct: 348 HECIDVMEKLFTFIFDE-----------IPKRFPDELKVIRKQYPFEDLIYRPFLRLTYK 396
Query: 309 DAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MR 364
+AIE+L + E + + D + E L E + I+ +P I+ FY M
Sbjct: 397 EAIEML---RASGETIGDYD-DFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMP 452
Query: 365 QNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSV 424
DD + D+ V R E+ G+Q ++ + Y++ +GS
Sbjct: 453 DIDDPNYSNSYDVFV-RGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSW 511
Query: 425 PHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456
PHAG G+G ER+ G+ NIR FPR P
Sbjct: 512 PHAGCGIGLERITMLYLGIPNIRKVTLFPRDP 543
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 120/314 (38%), Gaps = 56/314 (17%)
Query: 154 LAYATHKFFQENGFIWISSPIITA------SDCEGAGEQFCVTTLIPSSREAAESPVDAI 207
L Y T FF + GF W+ II+ D G G + + S + +
Sbjct: 22 LEYMTD-FFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMI--L 78
Query: 208 PKTKDGLIDWSQVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQ 265
K + +++ P R E+ + RH EF ++ E+ A ++D M +
Sbjct: 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIM-------R 131
Query: 266 YVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 325
+ R + G+ + R+F + + E E L
Sbjct: 132 LIERLVY----------------GLFRKAEEWTGREFPKTKRFEVFEYS-------EVLE 168
Query: 326 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR-IGE 384
++G D ++ E EE F + Y +E+ F+ D+++P GE
Sbjct: 169 EFGSDEKASQE---MEEPFWIINIPREFYDREVDGFWRN----------YDLILPYGYGE 215
Query: 385 LIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGV 443
+ G + LN DS+ YL++ G + P AG G+G ERLV+F G
Sbjct: 216 VASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGA 275
Query: 444 ENIRDAIPFPRTPG 457
++I + PFPR PG
Sbjct: 276 KHIAEVQPFPRIPG 289
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 94/461 (20%), Positives = 176/461 (38%), Gaps = 48/461 (10%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
E L+ + + VAG + T R F + D +Q + D G Q + I+
Sbjct: 49 KEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQD--VTGQIQIYVRQDDVGEQQYELFKIS 106
Query: 82 -TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ-------KKRVSREFLRT 133
G + ++G + ++ + + +KV+ + K+ P + ++R + +L
Sbjct: 107 DLGDIVGVRGTMFKTKVGE--LSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDL 164
Query: 134 KAHLRPRTN-TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT- 191
+ P + TF R+ + + ++ +G++ + +P++ A A F
Sbjct: 165 I--MNPESKKTFIT----RSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHN 218
Query: 192 ---LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPEL 248
+ R A E + + GL +VY G FR E +T RH EF M+E
Sbjct: 219 ALDMTLYMRIAIELHLKRL--IVGGL---EKVYEIGRVFRNEGIST-RHNPEFTMLELYE 272
Query: 249 AFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDRLSTVAERDF- 302
A+AD +D M + ++ +L K +D W ++D + DF
Sbjct: 273 AYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFW 332
Query: 303 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 362
Q+S +A EL + + + +G + E+ + ++ P + +P EI
Sbjct: 333 RQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLI--QPTFIYGHPVEISPLA 390
Query: 363 MRQNDDGRTVAAMDMLV---------PRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 413
+ DD R ++ + + + I Q D
Sbjct: 391 KKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE-- 448
Query: 414 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
+L+ YG P G G+G +RLV T +IRD + FP+
Sbjct: 449 DFLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQ 489
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 355 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLN----RD 410
PK++ A ++ + A DM++ E+ GGS +N R+
Sbjct: 454 PKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQRE 512
Query: 411 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 458
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T +
Sbjct: 513 KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAA 560
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 14/234 (5%)
Query: 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84
L VG + + GWV R S+ FI++ D + +Q D ++ S L
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASEL-RNEF 67
Query: 85 SIWIQGNV-------VPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AH 136
I + G V + + ++E+ + + ++ ++D P+ V+ E R K +
Sbjct: 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRY 126
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
L R + R + +F ++GF+ I +P++T + EGA + V + +
Sbjct: 127 LDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA-RDYLVPSRVHKG 185
Query: 197 REAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250
+ A + K + + + Y FR E+ R EF I+ E +F
Sbjct: 186 KFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSF 238
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 355 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLN----RD 410
PK++ A ++ + A DM++ E+ GGS +N R+
Sbjct: 454 PKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQRE 512
Query: 411 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 458
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T +
Sbjct: 513 KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAA 560
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 14/234 (5%)
Query: 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84
L VG + + GWV R S+ FI++ D + +Q D ++ S L
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASEL-RNEF 67
Query: 85 SIWIQGNV-------VPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AH 136
I + G V + + ++E+ + + ++ ++D P+ V+ E R K +
Sbjct: 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRY 126
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
L R + R + +F ++GF+ I +P++T + EGA + V + +
Sbjct: 127 LDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA-RDYLVPSRVHKG 185
Query: 197 REAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250
+ A + K + + + Y FR E+ R EF I+ E +F
Sbjct: 186 KFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSF 238
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 126/324 (38%), Gaps = 52/324 (16%)
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWIS----SPIITASDCEGAGEQFCVTTLIPSSR 197
+ + A+ L Y T KFF + GF W+ SPI + AGE +
Sbjct: 10 DIYKAIDIQTKILDYMT-KFFTDRGFKWLLPIMLSPITDPLWPDPAGEGIRPAEVDVYGV 68
Query: 198 EAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKD 255
+ + K + +++ P R E+ + RH EF ++ E+ A +KD
Sbjct: 69 RMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIEGAKMKD 128
Query: 256 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 315
M ++ ++ + +E W + R F Y D +E
Sbjct: 129 VMRL----IEELIYGLFRKAEE-------WTGR------EFPRARHFKVYDYKDILE--- 168
Query: 316 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 375
++G D ++ E EE P + + P+E FY R+ +
Sbjct: 169 ----------EFGSDEKASME---MEE-----PFWIVNIPRE---FYDREENG--VWKNY 205
Query: 376 DMLVPR-IGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSV-PHAGFGLGF 433
D+++P GE+ G + L DS+ YL++ G + P AG G+G
Sbjct: 206 DLILPYGYGEVSSGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIARAGKLKPSAGAGIGV 265
Query: 434 ERLVQFATGVENIRDAIPFPRTPG 457
ERLV+F G ++I + PFPR PG
Sbjct: 266 ERLVRFIVGAKHIAEVQPFPRVPG 289
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 101/475 (21%), Positives = 178/475 (37%), Gaps = 76/475 (16%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 57 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 114
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 115 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 167
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++ + F
Sbjct: 168 QRYLDLIANDKSR-QTFV----VRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF 222
Query: 188 CVT-TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEP 246
+ +P + + G + +V+ FR E + RH EF M+E
Sbjct: 223 ITHHNALDLDMYLRIAPELYLKRLVVG--GFERVFEINRNFRNEGISV-RHNPEFTMMEL 279
Query: 247 ELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDF---FNTWIEKGIIDRLSTVA 298
+A+AD D + + + + + +L K DF F + I +
Sbjct: 280 YMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR--P 337
Query: 299 ERDFVQLSYTDAIELL-----IKAKKKFEFLVKWGCDLQSEHERYLTE------EAFGGC 347
E D L DA + L I +K WG R +TE EA
Sbjct: 338 ETDMADLDNFDAAKALAESIGITVEKS------WGLG------RIVTEIFDEVAEAHLIQ 385
Query: 348 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKL 407
P +++YP E+ R + + + + G IG ++
Sbjct: 386 PTFITEYPAEVSPLARRNDVNPEITDRFEFFIG--GREIGNGFSELNDAEDQAERFQEQV 443
Query: 408 NR------DSYWW---YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
N ++ ++ Y+ YG P AG G+G +R++ T IRD I FP
Sbjct: 444 NAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 97/471 (20%), Positives = 177/471 (37%), Gaps = 62/471 (13%)
Query: 19 GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG 78
G NE L+ + + + VAG + T R +F+ + D +Q + D + G
Sbjct: 54 GKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQD--VGGRIQLYVARD-----DLPEG 106
Query: 79 LITTGASIWIQGNVVPSQGSKQKV---ELKVN--KIVLVGKSDPSYPI-------QKKRV 126
+ W G+++ ++G K EL ++ ++ L+ K+ P Q+ R
Sbjct: 107 VYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARY 166
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ +L ++ R NTF +VR+ + +F GF+ + +P++ A
Sbjct: 167 RQRYLDLISNDESR-NTF----KVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARP 221
Query: 187 FCVT-TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE 245
F + +P + + G + +V+ FR E + RH EF M+E
Sbjct: 222 FITHHNALDLDMYLRIAPELYLKRLVVG--GFERVFEINRNFRNEGISV-RHNPEFTMME 278
Query: 246 PELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDF---FNTWIEKGIIDRLSTV 297
+A+AD KD + + + + + IL + +DF F + I +
Sbjct: 279 LYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYR-- 336
Query: 298 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE------EAFGGCPVIV 351
E D L D+ + I WG R +TE EA P +
Sbjct: 337 PETDMADLDNFDSAK-AIAESIGIHVEKSWGLG------RIVTEIFEEVAEAHLIQPTFI 389
Query: 352 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKL---- 407
++YP E+ R + + + + G IG ++
Sbjct: 390 TEYPAEVSPLARRNDVNPEITDRFEFFIG--GREIGNGFSELNDAEDQAQRFLDQVAAKD 447
Query: 408 --NRDSYWW---YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
+ ++ ++ Y+ +G P AG G+G +R+V T IRD I FP
Sbjct: 448 AGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFP 498
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PH G LG +RL+ TG +IRD I FP++
Sbjct: 534 YGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKS 568
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 408 NRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
R+ + ++L+ YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 504 QREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 33/265 (12%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---DQVKSGLITTGA 84
VG +V+ GWV R + F+++ D L +Q V + Y ++V+ +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRAK 72
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKI-VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNT 143
+ + + +VE++++ + VL P +P+ E LR +
Sbjct: 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRY 132
Query: 144 FGAVA-------RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
R+R+ + A F GF+ + +P +T S EGA + L+P
Sbjct: 133 LDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD-----FLVPYR 187
Query: 197 REAAESPVDAIPKTKD---------GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPE 247
E A+P++ GL + Q+ FR E+ R +F ++ E
Sbjct: 188 HEPGL--FYALPQSPQLFKQMLMVAGLDRYFQIAR---CFRDEDLRADRQ-PDFTQLDLE 241
Query: 248 LAFADLKDDMACATAYLQYVVRYIL 272
++F +++D + + +V R L
Sbjct: 242 MSFVEVEDVLELNERLMAHVFREAL 266
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 108/492 (21%), Positives = 173/492 (35%), Gaps = 107/492 (21%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS---DAEGYDQVKSG 78
E L+ L + +AG + R +F V DGS +Q +T AE YD K
Sbjct: 79 KEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGS--GQIQFFVTPADVGAETYDAFKK- 135
Query: 79 LITTGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRT 133
W G++V ++G +K ++ +K ++ L+ K+ P + ++ + R
Sbjct: 136 --------WDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRY 187
Query: 134 KAH-----LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFC 188
+ + P T T R R + KF + F+ + +P++ A + F
Sbjct: 188 RQRYVDLIVTPETRT---TFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPF- 243
Query: 189 VTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPEL 248
VT E + + + + +V+ FR E + RH EF M+E
Sbjct: 244 VTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGV-SPRHNPEFTMMEFYA 302
Query: 249 AFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA------ERDF 302
A+ D R++ MDF I + +D L T E D
Sbjct: 303 AYTD---------------YRWL-------MDFTERLIRQAAVDALGTATIQYQGRELDL 340
Query: 303 VQ----LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY---LTEEAFGGC-------- 347
Q L+ T AI+ A + + L+SE +R +T+ AF
Sbjct: 341 AQPFHRLTITQAIQKY--APSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLA 398
Query: 348 ------------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXX--- 392
P + DYP E+ R++D TVA + R I G +
Sbjct: 399 LFEETAEAQLWEPTFIIDYPIEVSPL-ARESD---TVAG---ITERFELFITGREIANGF 451
Query: 393 ------XXXXXXXXXXXXXKLNRDSYWWYLDLRH-----YGSVPHAGFGLGFERLVQFAT 441
K D + D + YG P G G+G +RLV T
Sbjct: 452 SELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLT 511
Query: 442 GVENIRDAIPFP 453
IRD + FP
Sbjct: 512 DSPTIRDVLLFP 523
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 25/181 (13%)
Query: 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK--- 134
GL+ G+ + + SQ + +V L + + P ++ + +SR R K
Sbjct: 13 GLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSR---RKKDLQ 69
Query: 135 -AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA----------SDCEGA 183
+ R N G + R +FF + GF+ I SPI+ +D E +
Sbjct: 70 QIYAEERENYLGKLER-------EITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELS 122
Query: 184 GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWM 243
+ F V A + + + K L D +++ GP +R E S+ HL EF M
Sbjct: 123 KQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKE-SDGKEHLEEFTM 181
Query: 244 I 244
+
Sbjct: 182 L 182
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 25/181 (13%)
Query: 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK--- 134
GL+ G+ + + SQ + +V L + + P ++ + +SR R K
Sbjct: 13 GLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSR---RKKDLQ 69
Query: 135 -AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA----------SDCEGA 183
+ R N G + R +FF + GF+ I SPI+ +D E +
Sbjct: 70 QIYAEERENYLGKLER-------EITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELS 122
Query: 184 GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWM 243
+ F V A + + + K L D +++ GP +R E S+ HL EF M
Sbjct: 123 KQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKE-SDGKEHLEEFTM 181
Query: 244 I 244
+
Sbjct: 182 L 182
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 19/175 (10%)
Query: 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKA-H 136
GL+ G+ + SQ + +V L + + P ++ + +SR + +
Sbjct: 13 GLVPRGSHXASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIY 72
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA----------SDCEGAGEQ 186
R N G + R +FF + GF+ I SPI+ +D E + +
Sbjct: 73 AEERENYLGKLER-------EITRFFVDRGFLEIKSPILIPLEYIERXGIDNDTELSKQI 125
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEF 241
F V A + + + K L D +++ GP +R E S+ HL EF
Sbjct: 126 FRVDKNFCLRPXLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKE-SDGKEHLEEF 179
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 25/181 (13%)
Query: 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK--- 134
GL+ G+ + SQ + +V L + + P ++ + +SR R K
Sbjct: 12 GLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSR---RKKDLQ 68
Query: 135 -AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA----------SDCEGA 183
+ R N G + R +FF + GF+ I SPI+ +D E +
Sbjct: 69 QIYAEERENYLGKLER-------EITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELS 121
Query: 184 GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWM 243
+ F V + + + K L D +++ GP +R E S+ HL EF M
Sbjct: 122 KQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKE-SDGKEHLEEFTM 180
Query: 244 I 244
+
Sbjct: 181 L 181
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|2LNA|A Chain A, Solution Nmr Structure Of The Mitochondrial Inner Membrane
Domain (Residues 164-251), Ftsh_ext, From The
Paraplegin-Like Protein Afg3l2 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr6741a
Length = 99
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 280 DFFNTWIEKGIIDRLSTVAERDFVQLSYT 308
DF N ++ KG++DRL V +R FV++++T
Sbjct: 22 DFVNNYLSKGVVDRLEVVNKR-FVRVTFT 49
>pdb|1YBI|A Chain A, Crystal Structure Of Ha33a, A Neurotoxin-Associated
Protein From Clostridium Botulinum Type A
pdb|1YBI|B Chain B, Crystal Structure Of Ha33a, A Neurotoxin-Associated
Protein From Clostridium Botulinum Type A
Length = 288
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 212 DGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEP 246
+G++ W +++ G T R +SN + A++W+I P
Sbjct: 205 NGVLTW--IFSNGNTVRVSSSNDQNNDAQYWLINP 237
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 427 AGFGLGFERLVQFATGVENIRDAIPF 452
+G LG +RLV A G E++ D I F
Sbjct: 296 SGVALGVDRLVMLALGAESLADVIAF 321
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 285 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 344
++EKG+ ST DFV++S+ A++L+ K+ E E Y E F
Sbjct: 106 FLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVE-------------ETYGPEGVF 152
Query: 345 GGC 347
GG
Sbjct: 153 GGS 155
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 285 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 344
++EKG+ ST DFV++S+ A++L+ K+ E E Y E F
Sbjct: 106 FLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVE-------------ETYGPEGVF 152
Query: 345 GGC 347
GG
Sbjct: 153 GGS 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,760,340
Number of Sequences: 62578
Number of extensions: 561232
Number of successful extensions: 1130
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 43
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)