Query 012529
Match_columns 461
No_of_seqs 196 out of 1435
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0017 AsnS Aspartyl/asparagi 100.0 1E-110 3E-115 839.0 36.0 427 10-460 3-434 (435)
2 PLN02603 asparaginyl-tRNA synt 100.0 3E-109 7E-114 867.5 41.3 454 5-461 83-565 (565)
3 PTZ00425 asparagine-tRNA ligas 100.0 1E-104 3E-109 829.8 40.4 431 25-461 77-586 (586)
4 PLN02221 asparaginyl-tRNA synt 100.0 2E-104 4E-109 831.5 38.0 449 5-461 26-572 (572)
5 PLN02532 asparagine-tRNA synth 100.0 2E-104 5E-109 831.9 37.1 449 5-461 23-633 (633)
6 TIGR00457 asnS asparaginyl-tRN 100.0 8E-104 2E-108 817.6 38.5 429 26-461 13-453 (453)
7 PRK03932 asnC asparaginyl-tRNA 100.0 1E-102 2E-107 809.9 38.6 436 11-460 3-449 (450)
8 KOG0554 Asparaginyl-tRNA synth 100.0 3E-102 7E-107 752.2 30.0 426 24-461 15-446 (446)
9 TIGR00458 aspS_arch aspartyl-t 100.0 6.9E-99 1E-103 777.0 37.9 419 13-460 2-427 (428)
10 PRK05159 aspC aspartyl-tRNA sy 100.0 3.2E-98 7E-103 775.3 37.1 424 10-460 3-436 (437)
11 PTZ00401 aspartyl-tRNA synthet 100.0 8.2E-96 2E-100 766.3 37.9 431 11-460 65-549 (550)
12 PLN02850 aspartate-tRNA ligase 100.0 9.6E-96 2E-100 765.9 36.9 427 11-460 69-529 (530)
13 TIGR00499 lysS_bact lysyl-tRNA 100.0 7.1E-93 1.5E-97 741.6 34.3 427 5-457 25-494 (496)
14 PLN02502 lysyl-tRNA synthetase 100.0 7.6E-92 1.7E-96 736.8 35.4 437 5-456 81-550 (553)
15 PRK00484 lysS lysyl-tRNA synth 100.0 2.7E-91 5.9E-96 729.7 35.1 426 5-457 26-489 (491)
16 PRK12445 lysyl-tRNA synthetase 100.0 1.2E-90 2.6E-95 724.6 35.8 425 5-457 37-503 (505)
17 PTZ00417 lysine-tRNA ligase; P 100.0 1E-89 2.2E-94 722.7 33.5 440 5-457 105-583 (585)
18 PTZ00385 lysyl-tRNA synthetase 100.0 1.5E-88 3.3E-93 715.1 36.6 437 4-457 79-564 (659)
19 COG1190 LysU Lysyl-tRNA synthe 100.0 2.7E-88 5.8E-93 680.7 27.0 439 4-457 32-500 (502)
20 COG0173 AspS Aspartyl-tRNA syn 100.0 9.7E-87 2.1E-91 672.1 33.6 407 10-459 2-560 (585)
21 KOG0556 Aspartyl-tRNA syntheta 100.0 2.8E-87 6.1E-92 647.6 28.4 424 11-460 70-532 (533)
22 TIGR00459 aspS_bact aspartyl-t 100.0 3E-86 6.5E-91 696.2 36.8 428 10-459 2-557 (583)
23 PRK02983 lysS lysyl-tRNA synth 100.0 1.6E-84 3.5E-89 728.4 36.4 424 4-457 632-1092(1094)
24 PLN02903 aminoacyl-tRNA ligase 100.0 2.4E-83 5.1E-88 676.2 36.0 437 9-459 58-625 (652)
25 PRK00476 aspS aspartyl-tRNA sy 100.0 7.4E-82 1.6E-86 668.3 35.7 435 9-459 3-562 (588)
26 KOG1885 Lysyl-tRNA synthetase 100.0 4.2E-83 9.2E-88 628.5 16.4 440 3-456 75-555 (560)
27 PRK12820 bifunctional aspartyl 100.0 1.2E-80 2.5E-85 661.9 33.4 434 9-459 4-578 (706)
28 KOG0555 Asparaginyl-tRNA synth 100.0 2.4E-81 5.2E-86 604.1 23.5 415 25-460 119-544 (545)
29 cd00776 AsxRS_core Asx tRNA sy 100.0 3.1E-78 6.7E-83 603.2 23.0 319 126-457 2-322 (322)
30 PRK06462 asparagine synthetase 100.0 2.8E-75 6.1E-80 584.0 22.3 316 126-460 8-334 (335)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 1.9E-75 4.2E-80 588.9 17.5 311 128-457 2-335 (335)
32 KOG2411 Aspartyl-tRNA syntheta 100.0 7.1E-71 1.5E-75 544.8 27.0 409 9-459 33-601 (628)
33 cd00775 LysRS_core Lys_tRNA sy 100.0 1.7E-68 3.7E-73 534.2 21.5 296 142-456 2-328 (329)
34 TIGR00462 genX lysyl-tRNA synt 100.0 1.5E-67 3.3E-72 521.9 20.1 287 148-452 1-304 (304)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 9.8E-67 2.1E-71 506.8 21.0 262 148-456 1-268 (269)
36 cd00777 AspRS_core Asp tRNA sy 100.0 4.7E-62 1E-66 476.6 17.8 270 148-457 1-280 (280)
37 PRK09350 poxB regulator PoxA; 100.0 1.9E-61 4E-66 478.9 21.1 287 145-449 2-306 (306)
38 COG2269 Truncated, possibly in 100.0 4.6E-52 9.9E-57 388.5 15.3 290 145-455 13-320 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.9 1.2E-21 2.7E-26 171.8 13.2 122 11-143 2-134 (135)
40 cd04319 PhAsnRS_like_N PhAsnRS 99.8 2.2E-20 4.8E-25 156.1 12.9 101 31-137 1-103 (103)
41 cd04316 ND_PkAspRS_like_N ND_P 99.8 1.8E-19 3.9E-24 151.9 12.6 102 13-124 2-106 (108)
42 cd04322 LysRS_N LysRS_N: N-ter 99.8 9.4E-19 2E-23 147.5 12.5 104 31-139 1-108 (108)
43 cd04318 EcAsnRS_like_N EcAsnRS 99.7 3.4E-17 7.3E-22 131.0 12.3 81 32-114 2-82 (82)
44 cd04320 AspRS_cyto_N AspRS_cyt 99.7 2.5E-17 5.4E-22 137.4 12.0 90 31-124 1-101 (102)
45 cd00645 AsnA Asparagine synthe 99.7 7.6E-17 1.6E-21 153.6 14.3 267 154-451 3-298 (309)
46 cd04321 ScAspRS_mt_like_N ScAs 99.7 7.4E-17 1.6E-21 130.2 11.1 81 31-114 1-86 (86)
47 PTZ00213 asparagine synthetase 99.7 3.9E-16 8.4E-21 150.4 16.8 274 147-451 7-334 (348)
48 PRK05425 asparagine synthetase 99.7 4.9E-16 1.1E-20 149.5 16.4 269 151-451 11-308 (327)
49 cd04323 AsnRS_cyto_like_N AsnR 99.7 2.1E-16 4.5E-21 127.0 11.3 80 31-114 1-84 (84)
50 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.7 6E-16 1.3E-20 124.7 11.3 80 31-114 1-85 (85)
51 TIGR00669 asnA aspartate--ammo 99.6 6.3E-15 1.4E-19 141.5 16.3 274 147-451 4-315 (330)
52 PRK09537 pylS pyrolysyl-tRNA s 99.4 1.8E-13 3.8E-18 139.1 8.5 107 140-251 190-315 (417)
53 TIGR02367 PylS pyrrolysyl-tRNA 99.3 2.5E-12 5.5E-17 130.4 8.2 104 149-257 240-359 (453)
54 COG0016 PheS Phenylalanyl-tRNA 99.3 7.8E-12 1.7E-16 123.3 9.6 114 152-267 114-243 (335)
55 PF01409 tRNA-synt_2d: tRNA sy 99.3 4.9E-12 1.1E-16 121.6 7.8 113 152-268 20-154 (247)
56 cd00768 class_II_aaRS-like_cor 99.3 2.8E-12 6.1E-17 120.1 4.8 101 151-252 2-111 (211)
57 PRK00488 pheS phenylalanyl-tRN 99.3 1.7E-11 3.6E-16 121.7 9.7 112 152-268 111-237 (339)
58 PLN02853 Probable phenylalanyl 99.1 1.4E-10 3E-15 119.8 8.8 46 219-265 344-391 (492)
59 PTZ00326 phenylalanyl-tRNA syn 99.1 7.5E-10 1.6E-14 115.0 11.2 34 218-252 358-391 (494)
60 COG2502 AsnA Asparagine synthe 99.0 9.1E-09 2E-13 95.9 14.7 274 148-451 5-315 (330)
61 PF01336 tRNA_anti-codon: OB-f 99.0 5.9E-09 1.3E-13 81.2 10.6 74 32-112 1-75 (75)
62 TIGR00468 pheS phenylalanyl-tR 98.9 2.1E-08 4.6E-13 99.3 12.5 107 152-265 75-199 (294)
63 cd00773 HisRS-like_core Class 98.8 9.2E-08 2E-12 93.3 14.9 102 148-252 2-116 (261)
64 PRK04172 pheS phenylalanyl-tRN 98.8 5.4E-08 1.2E-12 103.2 13.6 45 219-264 352-398 (489)
65 PLN02788 phenylalanine-tRNA sy 98.6 2E-07 4.4E-12 94.9 10.4 33 217-250 147-179 (402)
66 TIGR00470 sepS O-phosphoseryl- 98.5 2.4E-07 5.2E-12 94.5 8.8 49 219-267 209-259 (533)
67 COG0124 HisS Histidyl-tRNA syn 98.5 7E-07 1.5E-11 92.1 10.7 118 146-266 16-153 (429)
68 cd00496 PheRS_alpha_core Pheny 98.4 1.4E-06 3E-11 82.8 8.6 111 153-266 5-130 (218)
69 PF00587 tRNA-synt_2b: tRNA sy 98.3 7.6E-07 1.6E-11 81.3 4.8 120 150-270 1-137 (173)
70 TIGR00469 pheS_mito phenylalan 98.3 1.5E-06 3.3E-11 89.3 6.6 57 373-448 279-337 (460)
71 cd00778 ProRS_core_arch_euk Pr 98.1 4.5E-06 9.7E-11 81.4 6.5 121 147-267 31-171 (261)
72 cd00670 Gly_His_Pro_Ser_Thr_tR 98.0 1.4E-05 3.1E-10 76.3 8.0 117 149-266 3-138 (235)
73 cd00772 ProRS_core Prolyl-tRNA 98.0 4.2E-05 9.2E-10 74.7 11.2 120 147-267 31-171 (264)
74 TIGR00442 hisS histidyl-tRNA s 98.0 2.3E-05 4.9E-10 81.2 8.5 105 145-252 11-131 (397)
75 cd00779 ProRS_core_prok Prolyl 97.9 4.2E-05 9.1E-10 74.4 8.1 119 147-266 30-164 (255)
76 TIGR00409 proS_fam_II prolyl-t 97.8 9.7E-05 2.1E-09 79.7 11.2 123 146-271 45-188 (568)
77 PRK09194 prolyl-tRNA synthetas 97.8 0.00012 2.7E-09 79.2 11.2 126 145-271 44-188 (565)
78 PRK00037 hisS histidyl-tRNA sy 97.8 7.6E-05 1.7E-09 77.6 8.8 105 145-252 15-132 (412)
79 cd00774 GlyRS-like_core Glycyl 97.8 2E-05 4.3E-10 76.6 3.7 100 147-256 31-147 (254)
80 PRK12293 hisZ ATP phosphoribos 97.7 0.00011 2.4E-09 72.4 7.5 113 145-266 16-138 (281)
81 cd00771 ThrRS_core Threonyl-tR 97.6 0.00023 5E-09 70.8 9.5 117 147-268 29-164 (298)
82 PRK12292 hisZ ATP phosphoribos 97.5 0.00018 4E-09 74.3 7.5 120 145-266 14-150 (391)
83 PLN02908 threonyl-tRNA synthet 97.5 0.00023 4.9E-09 78.8 8.4 124 144-271 317-458 (686)
84 TIGR00408 proS_fam_I prolyl-tR 97.5 0.00019 4.1E-09 75.9 7.3 121 147-267 37-177 (472)
85 PF13393 tRNA-synt_His: Histid 97.5 0.00025 5.4E-09 70.9 7.6 118 145-265 7-139 (311)
86 CHL00201 syh histidine-tRNA sy 97.5 0.00038 8.3E-09 72.9 9.2 104 146-252 16-136 (430)
87 PRK00413 thrS threonyl-tRNA sy 97.5 0.00033 7.1E-09 77.1 8.8 122 144-269 266-406 (638)
88 PLN02972 Histidyl-tRNA synthet 97.5 0.00034 7.4E-09 76.7 8.6 121 143-266 336-470 (763)
89 PRK12421 ATP phosphoribosyltra 97.5 0.00039 8.3E-09 71.9 8.5 121 145-267 18-154 (392)
90 cd00770 SerRS_core Seryl-tRNA 97.4 0.00041 8.8E-09 69.0 8.2 119 145-267 49-186 (297)
91 TIGR00443 hisZ_biosyn_reg ATP 97.4 0.00051 1.1E-08 68.9 8.9 104 146-252 6-121 (314)
92 PLN02530 histidine-tRNA ligase 97.4 0.00036 7.8E-09 74.2 8.2 117 145-264 81-214 (487)
93 PRK05431 seryl-tRNA synthetase 97.4 0.00049 1.1E-08 71.8 8.9 120 145-268 167-306 (425)
94 TIGR00418 thrS threonyl-tRNA s 97.4 0.00057 1.2E-08 74.1 9.7 119 144-267 196-334 (563)
95 PRK12305 thrS threonyl-tRNA sy 97.4 0.00055 1.2E-08 74.4 9.3 124 144-271 202-344 (575)
96 PRK12325 prolyl-tRNA synthetas 97.4 0.00072 1.6E-08 71.0 9.6 119 147-267 46-181 (439)
97 PRK12420 histidyl-tRNA synthet 97.4 0.00052 1.1E-08 71.7 8.5 119 145-266 15-151 (423)
98 PRK12444 threonyl-tRNA synthet 97.4 0.00047 1E-08 75.9 8.5 118 147-269 273-409 (639)
99 PRK14799 thrS threonyl-tRNA sy 97.4 0.00038 8.3E-09 74.6 7.3 124 144-271 164-305 (545)
100 PRK08661 prolyl-tRNA synthetas 97.3 0.00037 8.1E-09 73.8 6.8 119 147-266 43-181 (477)
101 TIGR00414 serS seryl-tRNA synt 97.3 0.00047 1E-08 71.7 6.4 119 145-267 170-307 (418)
102 PLN02678 seryl-tRNA synthetase 97.1 0.0011 2.3E-08 69.3 7.1 120 146-267 172-312 (448)
103 PLN02837 threonine-tRNA ligase 97.1 0.0013 2.9E-08 71.8 8.0 125 144-270 243-384 (614)
104 KOG2784 Phenylalanyl-tRNA synt 97.1 0.0005 1.1E-08 67.9 4.0 48 219-267 335-384 (483)
105 cd04487 RecJ_OBF2_like RecJ_OB 97.0 0.0059 1.3E-07 47.4 8.7 73 32-112 1-73 (73)
106 cd04489 ExoVII_LU_OBF ExoVII_L 97.0 0.011 2.3E-07 46.1 10.3 73 32-110 2-75 (78)
107 PRK03991 threonyl-tRNA synthet 97.0 0.0027 5.9E-08 69.1 9.1 125 145-271 224-366 (613)
108 PRK12295 hisZ ATP phosphoribos 97.0 0.0024 5.2E-08 65.5 8.0 110 152-267 8-133 (373)
109 PRK04173 glycyl-tRNA synthetas 96.9 0.0037 8E-08 65.9 9.4 50 219-271 188-241 (456)
110 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.8 0.017 3.6E-07 47.0 10.6 76 32-114 2-79 (95)
111 cd04483 hOBFC1_like hOBFC1_lik 96.5 0.028 6E-07 45.7 9.7 70 34-110 2-90 (92)
112 PLN02320 seryl-tRNA synthetase 96.4 0.014 3.1E-07 61.6 9.4 117 147-269 232-370 (502)
113 COG0423 GRS1 Glycyl-tRNA synth 96.3 0.0026 5.6E-08 66.3 2.9 30 148-177 40-71 (558)
114 cd04482 RPA2_OBF_like RPA2_OBF 96.3 0.042 9E-07 44.6 9.2 74 33-116 2-78 (91)
115 PRK12294 hisZ ATP phosphoribos 96.2 0.019 4.2E-07 56.2 8.3 106 145-259 4-118 (272)
116 COG0442 ProS Prolyl-tRNA synth 96.1 0.012 2.5E-07 62.2 6.7 115 147-266 46-180 (500)
117 PF10451 Stn1: Telomere regula 96.1 0.036 7.7E-07 53.7 9.3 78 29-114 66-149 (256)
118 PF13742 tRNA_anti_2: OB-fold 95.9 0.054 1.2E-06 44.6 8.6 77 29-110 21-98 (99)
119 PRK14894 glycyl-tRNA synthetas 95.5 0.071 1.5E-06 56.0 9.2 31 148-178 40-72 (539)
120 cd03524 RPA2_OBF_family RPA2_O 95.2 0.18 4E-06 37.6 8.6 67 34-109 2-73 (75)
121 COG1107 Archaea-specific RecJ- 95.0 0.039 8.4E-07 58.1 5.8 79 27-113 211-289 (715)
122 PLN02734 glycyl-tRNA synthetas 94.9 0.03 6.5E-07 61.1 4.9 32 148-179 109-141 (684)
123 COG0172 SerS Seryl-tRNA synthe 94.7 0.057 1.2E-06 55.8 5.9 115 147-267 173-308 (429)
124 COG3111 Periplasmic protein wi 94.6 0.25 5.5E-06 41.8 8.5 73 27-112 55-127 (128)
125 TIGR00389 glyS_dimeric glycyl- 94.6 0.045 9.7E-07 58.6 5.1 32 147-178 36-68 (551)
126 cd04490 PolII_SU_OBF PolII_SU_ 94.5 0.49 1.1E-05 37.2 9.6 67 32-109 2-72 (79)
127 cd04492 YhaM_OBF_like YhaM_OBF 94.4 0.83 1.8E-05 35.4 10.9 61 45-114 18-78 (83)
128 cd04485 DnaE_OBF DnaE_OBF: A s 94.4 0.16 3.5E-06 39.3 6.7 71 34-113 2-78 (84)
129 PRK07373 DNA polymerase III su 94.2 0.25 5.5E-06 51.9 9.6 78 28-113 279-361 (449)
130 PF03590 AsnA: Aspartate-ammon 94.2 0.33 7.1E-06 46.0 9.2 121 152-274 7-145 (244)
131 PRK00960 seryl-tRNA synthetase 94.0 0.14 3E-06 54.5 7.3 121 145-266 220-386 (517)
132 PF04076 BOF: Bacterial OB fol 94.0 0.3 6.5E-06 40.5 7.8 80 12-110 23-102 (103)
133 PF12869 tRNA_anti-like: tRNA_ 94.0 0.23 4.9E-06 43.6 7.5 68 26-95 64-132 (144)
134 TIGR00156 conserved hypothetic 93.7 0.55 1.2E-05 40.3 9.0 71 27-110 55-125 (126)
135 COG4085 Predicted RNA-binding 93.7 0.38 8.3E-06 43.9 8.3 74 27-107 49-128 (204)
136 TIGR00415 serS_MJ seryl-tRNA s 93.4 0.39 8.4E-06 50.8 9.2 120 147-267 222-387 (520)
137 cd04479 RPA3 RPA3: A subfamily 93.3 0.86 1.9E-05 37.7 9.4 68 27-114 13-80 (101)
138 PRK09616 pheT phenylalanyl-tRN 93.2 0.2 4.3E-06 54.3 7.0 111 152-266 362-488 (552)
139 PRK10053 hypothetical protein; 93.1 0.68 1.5E-05 40.1 8.6 71 27-110 59-129 (130)
140 PRK15491 replication factor A; 92.7 0.66 1.4E-05 47.6 9.6 92 12-118 58-159 (374)
141 KOG2324 Prolyl-tRNA synthetase 92.5 0.28 6.2E-06 49.0 6.2 120 147-272 51-191 (457)
142 PRK14699 replication factor A; 92.2 0.94 2E-05 48.1 10.1 87 29-122 67-163 (484)
143 COG5235 RFA2 Single-stranded D 92.0 0.91 2E-05 41.9 8.3 64 31-98 68-132 (258)
144 PF08661 Rep_fac-A_3: Replicat 92.0 0.79 1.7E-05 38.4 7.6 58 27-96 16-73 (109)
145 PRK06826 dnaE DNA polymerase I 92.0 0.7 1.5E-05 54.1 9.5 80 28-114 990-1074(1151)
146 PRK07374 dnaE DNA polymerase I 91.9 0.68 1.5E-05 54.2 9.4 78 28-113 999-1081(1170)
147 PRK05672 dnaE2 error-prone DNA 91.8 0.71 1.5E-05 53.6 9.4 79 28-114 952-1033(1046)
148 PRK06920 dnaE DNA polymerase I 89.9 1.3 2.9E-05 51.5 9.3 79 28-114 942-1025(1107)
149 PRK05673 dnaE DNA polymerase I 89.9 1 2.2E-05 52.8 8.3 80 28-115 976-1060(1135)
150 KOG2783 Phenylalanyl-tRNA synt 89.7 0.17 3.6E-06 50.9 1.6 35 216-251 150-184 (436)
151 COG0441 ThrS Threonyl-tRNA syn 89.6 0.73 1.6E-05 49.9 6.5 119 148-271 220-357 (589)
152 PRK06461 single-stranded DNA-b 89.3 4.3 9.4E-05 35.1 10.0 83 12-114 5-100 (129)
153 KOG1936 Histidyl-tRNA syntheta 89.2 0.88 1.9E-05 46.7 6.2 109 145-258 71-191 (518)
154 cd00769 PheRS_beta_core Phenyl 88.8 0.43 9.4E-06 44.3 3.6 26 153-178 4-29 (198)
155 PF03100 CcmE: CcmE; InterPro 88.0 12 0.00027 32.3 11.9 84 13-118 38-126 (131)
156 cd04474 RPA1_DBD_A RPA1_DBD_A: 87.5 3.4 7.4E-05 34.2 7.9 73 30-107 10-97 (104)
157 COG3705 HisZ ATP phosphoribosy 87.3 1 2.2E-05 46.3 5.4 102 147-251 16-128 (390)
158 COG2024 Phenylalanyl-tRNA synt 87.2 0.35 7.7E-06 48.6 2.0 39 415-454 313-352 (536)
159 PRK07279 dnaE DNA polymerase I 87.0 2.3 4.9E-05 49.2 8.5 74 29-110 884-963 (1034)
160 cd04488 RecG_wedge_OBF RecG_we 87.0 7.5 0.00016 29.0 9.1 67 34-109 2-72 (75)
161 cd04484 polC_OBF polC_OBF: A s 86.6 14 0.0003 29.1 10.9 73 32-110 2-80 (82)
162 PRK13480 3'-5' exoribonuclease 86.4 5.2 0.00011 40.1 9.8 79 29-116 11-94 (314)
163 PRK13150 cytochrome c-type bio 86.1 12 0.00026 33.5 10.9 75 27-119 55-134 (159)
164 PRK14699 replication factor A; 85.8 6.8 0.00015 41.7 10.8 83 30-118 177-269 (484)
165 cd04491 SoSSB_OBF SoSSB_OBF: A 85.1 7.3 0.00016 30.4 8.3 54 45-109 22-76 (82)
166 PRK12366 replication factor A; 84.8 5.9 0.00013 43.7 10.2 81 28-114 290-382 (637)
167 KOG1035 eIF-2alpha kinase GCN2 84.7 2 4.3E-05 49.7 6.5 118 145-267 929-1055(1351)
168 PRK00286 xseA exodeoxyribonucl 84.2 6.8 0.00015 41.2 10.0 77 29-113 23-102 (438)
169 KOG3108 Single-stranded DNA-bi 83.9 8 0.00017 37.7 9.5 76 30-112 69-145 (265)
170 COG1570 XseA Exonuclease VII, 83.9 5.3 0.00011 41.6 8.7 79 29-113 23-102 (440)
171 PRK10917 ATP-dependent DNA hel 83.7 8.2 0.00018 43.0 10.9 78 27-112 57-137 (681)
172 PRK07217 replication factor A; 83.0 16 0.00035 36.3 11.3 91 13-121 74-167 (311)
173 PRK07211 replication factor A; 82.8 8 0.00017 41.0 9.7 72 30-109 64-146 (485)
174 PRK15491 replication factor A; 81.9 11 0.00023 38.8 10.1 81 30-117 177-268 (374)
175 PRK13165 cytochrome c-type bio 81.8 21 0.00046 32.0 10.6 75 27-119 55-134 (160)
176 TIGR00237 xseA exodeoxyribonuc 81.3 9 0.0002 40.2 9.5 76 30-113 18-96 (432)
177 COG1571 Predicted DNA-binding 81.3 7.8 0.00017 40.1 8.7 74 30-114 267-343 (421)
178 PRK13254 cytochrome c-type bio 80.9 24 0.00052 31.3 10.6 75 27-119 49-127 (148)
179 COG3689 Predicted membrane pro 80.6 8 0.00017 37.3 7.9 89 24-118 170-265 (271)
180 PRK07218 replication factor A; 80.4 12 0.00026 39.1 9.9 82 12-114 59-148 (423)
181 PF15072 DUF4539: Domain of un 80.2 8.9 0.00019 30.7 7.0 53 33-91 6-59 (86)
182 PRK07459 single-stranded DNA-b 79.5 20 0.00043 30.6 9.4 52 61-115 46-104 (121)
183 PRK12366 replication factor A; 79.1 13 0.00029 41.0 10.3 79 28-116 183-271 (637)
184 KOG2509 Seryl-tRNA synthetase 79.0 4.1 8.8E-05 42.0 5.8 35 145-179 182-216 (455)
185 PRK00036 primosomal replicatio 78.9 7.1 0.00015 32.6 6.2 52 60-115 48-99 (107)
186 PRK12421 ATP phosphoribosyltra 78.4 1.4 3E-05 45.7 2.3 47 374-442 282-329 (392)
187 PRK12292 hisZ ATP phosphoribos 78.3 1.7 3.8E-05 44.9 3.0 44 374-439 275-319 (391)
188 TIGR00617 rpa1 replication fac 77.4 15 0.00032 40.4 10.0 92 12-117 181-287 (608)
189 TIGR00344 alaS alanine--tRNA l 77.1 14 0.00029 42.4 9.8 80 155-253 3-92 (851)
190 PRK02801 primosomal replicatio 76.7 8.8 0.00019 31.6 6.3 49 61-112 50-100 (101)
191 PRK08486 single-stranded DNA-b 76.2 17 0.00038 33.3 8.6 37 80-116 67-109 (182)
192 cd05694 S1_Rrp5_repeat_hs2_sc2 76.1 15 0.00033 28.2 7.1 46 33-89 7-53 (74)
193 PRK07080 hypothetical protein; 74.8 3.6 7.9E-05 40.9 4.0 48 219-267 153-201 (317)
194 TIGR00443 hisZ_biosyn_reg ATP 74.5 3 6.4E-05 41.8 3.4 46 374-441 267-313 (314)
195 PRK07218 replication factor A; 74.4 30 0.00065 36.2 10.8 76 29-116 172-255 (423)
196 PRK07211 replication factor A; 72.2 21 0.00045 38.0 9.0 79 29-116 171-260 (485)
197 PRK13159 cytochrome c-type bio 72.1 56 0.0012 29.2 10.4 74 27-119 49-127 (155)
198 PRK06386 replication factor A; 72.0 51 0.0011 33.7 11.5 78 29-120 117-202 (358)
199 PLN02900 alanyl-tRNA synthetas 71.9 34 0.00073 39.6 11.3 88 152-253 14-115 (936)
200 TIGR00643 recG ATP-dependent D 71.7 27 0.00058 38.6 10.3 73 27-109 30-107 (630)
201 cd04486 YhcR_OBF_like YhcR_OBF 70.6 33 0.00072 26.7 7.9 68 33-113 1-76 (78)
202 COG1200 RecG RecG-like helicas 69.8 41 0.00088 37.0 10.8 78 27-113 58-139 (677)
203 PRK07135 dnaE DNA polymerase I 68.6 15 0.00031 42.6 7.5 62 28-95 896-961 (973)
204 TIGR00471 pheT_arch phenylalan 65.7 11 0.00024 40.9 5.7 113 151-266 364-490 (551)
205 CHL00201 syh histidine-tRNA sy 64.8 6.8 0.00015 41.1 3.8 19 424-442 299-317 (430)
206 TIGR00442 hisS histidyl-tRNA s 62.8 7.5 0.00016 40.1 3.6 49 374-443 262-313 (397)
207 PF13567 DUF4131: Domain of un 62.5 49 0.0011 28.7 8.5 63 29-98 75-147 (176)
208 cd00673 AlaRS_core Alanyl-tRNA 62.0 25 0.00053 33.6 6.5 94 152-264 2-107 (232)
209 PRK06752 single-stranded DNA-b 59.1 23 0.00051 29.6 5.4 36 80-115 65-106 (112)
210 PRK08402 replication factor A; 58.3 60 0.0013 33.2 9.1 76 30-112 73-159 (355)
211 PRK05813 single-stranded DNA-b 56.5 1.1E+02 0.0023 29.1 9.9 82 27-115 6-103 (219)
212 PRK05813 single-stranded DNA-b 56.4 96 0.0021 29.4 9.5 84 29-116 109-211 (219)
213 PRK07275 single-stranded DNA-b 54.7 27 0.00058 31.5 5.2 52 61-115 49-106 (162)
214 PRK06642 single-stranded DNA-b 54.6 1E+02 0.0022 27.4 8.9 52 61-115 55-117 (152)
215 PF15513 DUF4651: Domain of un 54.1 16 0.00035 27.2 3.1 22 149-170 2-23 (62)
216 PRK04036 DNA polymerase II sma 53.9 45 0.00098 35.8 7.8 74 28-110 152-227 (504)
217 cd04496 SSB_OBF SSB_OBF: A sub 52.7 36 0.00078 27.1 5.4 50 60-112 45-100 (100)
218 PF12857 TOBE_3: TOBE-like dom 51.0 72 0.0016 23.2 6.2 50 33-89 6-56 (58)
219 PRK06863 single-stranded DNA-b 50.0 30 0.00065 31.4 4.8 52 61-115 54-111 (168)
220 PF00436 SSB: Single-strand bi 49.0 30 0.00064 27.9 4.3 49 61-112 50-104 (104)
221 PRK06751 single-stranded DNA-b 48.6 31 0.00068 31.4 4.7 52 61-115 49-106 (173)
222 PF02091 tRNA-synt_2e: Glycyl- 48.3 12 0.00025 36.2 1.9 57 370-451 120-177 (284)
223 TIGR00594 polc DNA-directed DN 48.3 32 0.00069 40.3 5.9 36 28-65 980-1021(1022)
224 PRK06253 O-phosphoseryl-tRNA s 48.2 21 0.00046 38.0 4.1 49 219-267 210-260 (529)
225 cd00733 GlyRS_alpha_core Class 47.5 13 0.00027 35.8 2.0 57 370-451 121-178 (279)
226 PRK06958 single-stranded DNA-b 47.3 32 0.0007 31.6 4.6 52 61-115 54-111 (182)
227 PRK09348 glyQ glycyl-tRNA synt 45.7 14 0.00029 35.6 2.0 58 370-452 125-183 (283)
228 cd05698 S1_Rrp5_repeat_hs6_sc5 45.3 1.2E+02 0.0026 22.3 7.1 48 33-89 3-54 (70)
229 KOG1637 Threonyl-tRNA syntheta 45.2 40 0.00086 35.4 5.3 114 148-265 192-323 (560)
230 KOG2298 Glycyl-tRNA synthetase 44.4 5.5 0.00012 41.5 -0.9 32 220-252 212-245 (599)
231 PRK08763 single-stranded DNA-b 42.7 45 0.00097 30.1 4.8 52 61-115 54-111 (164)
232 cd00496 PheRS_alpha_core Pheny 42.7 13 0.00027 35.1 1.3 30 420-449 180-212 (218)
233 PF11736 DUF3299: Protein of u 42.6 2.4E+02 0.0051 24.9 9.2 81 25-110 51-143 (146)
234 PF04057 Rep-A_N: Replication 41.9 1.4E+02 0.003 24.5 7.2 61 48-113 40-100 (101)
235 PRK12293 hisZ ATP phosphoribos 41.9 14 0.00031 36.4 1.6 39 374-441 242-280 (281)
236 PRK06293 single-stranded DNA-b 41.4 46 0.00099 30.0 4.6 52 61-115 45-102 (161)
237 PRK00448 polC DNA polymerase I 41.0 2E+02 0.0044 35.1 11.0 82 28-113 235-321 (1437)
238 PRK06253 O-phosphoseryl-tRNA s 39.7 23 0.00051 37.8 2.8 36 421-456 312-350 (529)
239 TIGR01405 polC_Gram_pos DNA po 38.9 2.6E+02 0.0057 33.5 11.4 81 28-113 6-92 (1213)
240 PRK07274 single-stranded DNA-b 38.7 77 0.0017 27.3 5.5 36 80-115 65-105 (131)
241 cd05705 S1_Rrp5_repeat_hs14 S1 38.7 69 0.0015 24.5 4.7 48 33-89 6-60 (74)
242 TIGR00388 glyQ glycyl-tRNA syn 38.1 20 0.00043 34.7 1.8 59 370-453 122-181 (293)
243 TIGR00621 ssb single stranded 37.1 61 0.0013 29.1 4.8 53 61-116 53-111 (164)
244 PLN02972 Histidyl-tRNA synthet 36.6 22 0.00047 40.0 2.1 48 374-442 606-655 (763)
245 PF09104 BRCA-2_OB3: BRCA2, ol 36.6 3E+02 0.0065 24.3 9.6 85 29-116 18-103 (143)
246 PRK06341 single-stranded DNA-b 36.5 3E+02 0.0064 24.9 9.0 36 80-115 72-117 (166)
247 PRK06763 F0F1 ATP synthase sub 35.3 73 0.0016 29.6 4.9 66 31-113 39-104 (213)
248 cd04452 S1_IF2_alpha S1_IF2_al 35.0 1.2E+02 0.0025 22.8 5.5 50 33-89 6-59 (76)
249 PF04046 PSP: PSP; InterPro: 34.8 44 0.00095 23.7 2.6 24 403-426 11-35 (48)
250 PRK08182 single-stranded DNA-b 34.7 1.1E+02 0.0023 27.1 5.8 52 61-115 56-113 (148)
251 COG3390 Uncharacterized protei 34.2 2E+02 0.0044 26.5 7.5 61 30-94 46-110 (196)
252 cd05707 S1_Rrp5_repeat_sc11 S1 34.2 1E+02 0.0023 22.6 5.0 48 33-89 3-54 (68)
253 PF03843 Slp: Outer membrane l 33.7 85 0.0018 28.2 5.1 68 24-97 29-108 (160)
254 PLN02265 probable phenylalanyl 32.8 70 0.0015 35.2 5.2 28 151-178 399-426 (597)
255 PRK13732 single-stranded DNA-b 29.3 1.2E+02 0.0025 27.8 5.2 38 80-117 72-117 (175)
256 TIGR00418 thrS threonyl-tRNA s 29.3 26 0.00057 38.0 1.3 17 426-442 442-458 (563)
257 cd05708 S1_Rrp5_repeat_sc12 S1 29.0 2.4E+02 0.0052 20.9 7.2 49 33-89 5-57 (77)
258 COG0752 GlyQ Glycyl-tRNA synth 28.9 41 0.0009 32.2 2.3 61 370-454 126-186 (298)
259 PRK00037 hisS histidyl-tRNA sy 28.6 46 0.001 34.4 2.9 49 374-443 263-314 (412)
260 PRK06386 replication factor A; 27.8 4.1E+02 0.0088 27.2 9.3 76 13-108 4-87 (358)
261 PRK08059 general stress protei 27.7 2.4E+02 0.0053 23.8 6.7 65 33-108 10-78 (123)
262 PRK00629 pheT phenylalanyl-tRN 26.8 86 0.0019 35.7 4.8 27 152-178 490-516 (791)
263 PRK12420 histidyl-tRNA synthet 26.7 55 0.0012 34.1 3.1 50 374-442 279-331 (423)
264 PF00575 S1: S1 RNA binding do 26.4 1.6E+02 0.0034 21.9 4.9 48 33-89 7-58 (74)
265 PRK09010 single-stranded DNA-b 26.2 1.1E+02 0.0024 27.9 4.6 52 61-115 56-116 (177)
266 TIGR03683 A-tRNA_syn_arch alan 26.0 27 0.00059 40.2 0.7 28 425-453 235-262 (902)
267 PF03790 KNOX1: KNOX1 domain ; 25.8 57 0.0012 22.8 1.9 29 398-426 3-31 (45)
268 PTZ00148 40S ribosomal protein 25.2 1E+02 0.0023 28.7 4.1 56 37-94 42-110 (205)
269 cd04472 S1_PNPase S1_PNPase: P 25.0 1.8E+02 0.004 20.9 4.9 48 33-89 3-54 (68)
270 PLN02530 histidine-tRNA ligase 24.5 60 0.0013 34.6 2.9 18 424-441 373-390 (487)
271 cd05689 S1_RPS1_repeat_ec4 S1_ 24.4 1.6E+02 0.0035 21.8 4.6 21 33-55 6-26 (72)
272 PRK07252 hypothetical protein; 24.3 4.4E+02 0.0095 22.3 10.8 48 33-89 6-57 (120)
273 cd05692 S1_RPS1_repeat_hs4 S1_ 24.0 2.7E+02 0.0059 19.8 6.9 48 33-89 3-54 (69)
274 cd00673 AlaRS_core Alanyl-tRNA 23.7 47 0.001 31.7 1.7 20 423-442 211-231 (232)
275 PRK13902 alaS alanyl-tRNA synt 23.5 33 0.00072 39.5 0.7 30 423-453 228-258 (900)
276 cd04477 RPA1N RPA1N: A subfami 23.5 74 0.0016 26.0 2.6 56 50-112 40-96 (97)
277 cd04497 hPOT1_OB1_like hPOT1_O 23.4 3.9E+02 0.0084 23.0 7.4 65 27-95 12-84 (138)
278 PRK01584 alanyl-tRNA synthetas 23.2 52 0.0011 36.0 2.1 83 152-253 4-95 (594)
279 KOG2298 Glycyl-tRNA synthetase 23.1 65 0.0014 33.9 2.7 32 149-180 47-79 (599)
280 PRK05807 hypothetical protein; 22.9 5E+02 0.011 22.4 8.3 65 33-109 8-75 (136)
281 PRK05733 single-stranded DNA-b 22.8 1.5E+02 0.0033 26.9 4.8 36 80-115 71-114 (172)
282 TIGR00752 slp outer membrane l 22.7 3.2E+02 0.0069 25.1 6.8 28 25-52 44-71 (182)
283 smart00581 PSP proline-rich do 22.6 94 0.002 22.6 2.6 24 403-426 15-39 (54)
284 PF12109 CXCR4_N: CXCR4 Chemok 22.2 32 0.00069 22.1 0.2 10 224-233 21-30 (33)
285 cd04493 BRCA2DBD_OB1 BRCA2DBD_ 22.1 1.7E+02 0.0037 24.2 4.4 51 36-90 7-61 (100)
286 PRK08582 hypothetical protein; 22.1 2.4E+02 0.0052 24.6 5.7 47 34-89 9-59 (139)
287 PF03459 TOBE: TOBE domain; I 21.9 3.1E+02 0.0067 19.7 6.3 51 33-89 6-56 (64)
288 cd05703 S1_Rrp5_repeat_hs12_sc 21.9 2.2E+02 0.0048 21.5 4.9 48 33-89 3-56 (73)
289 cd04453 S1_RNase_E S1_RNase_E: 21.5 3.1E+02 0.0067 21.7 5.8 50 33-89 10-66 (88)
290 PF00313 CSD: 'Cold-shock' DNA 21.4 3.3E+02 0.0072 19.8 8.0 51 34-90 1-51 (66)
291 PRK12295 hisZ ATP phosphoribos 21.1 71 0.0015 32.8 2.6 46 374-439 323-370 (373)
292 cd05706 S1_Rrp5_repeat_sc10 S1 21.0 3.5E+02 0.0076 19.9 7.7 49 33-89 6-57 (73)
293 CHL00192 syfB phenylalanyl-tRN 20.4 1.3E+02 0.0028 33.8 4.6 27 152-178 401-427 (704)
294 COG2024 Phenylalanyl-tRNA synt 20.2 55 0.0012 33.5 1.4 49 219-267 209-259 (536)
No 1
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-110 Score=839.00 Aligned_cols=427 Identities=44% Similarity=0.743 Sum_probs=386.0
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (461)
.+++++|+.+. ..+++|+|+|||+++|.+|+++||.||||||. ||||++++. ..++ ++. |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788888874 34499999999999999999999999999987 999998743 2355 677 9999999
Q ss_pred EEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC-hhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhC
Q 012529 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (461)
Q Consensus 87 ~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~-~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~ 165 (461)
.|+|+|++++.++|++||++++|+|++.++++||++++.++ +++++++|||++|++..+++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999667999999986 99999999999999999999999999999999999999
Q ss_pred CcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccce
Q 012529 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE 245 (461)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE 245 (461)
||+||+||+|+++++||++++|.|+|++. .++|++|+.+ ++ ..+.+.++|||+|||+||||+|+|+|||+||||+|
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v~yf~~-~a~LtqS~QL--yk-e~~~~al~rVf~igP~FRAE~s~T~RHL~EF~~ld 227 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKVDYFDK-EAYLTQSPQL--YK-EALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLD 227 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEEeecCc-ceEEecCHHH--HH-HHHHHHhCceEEecCceecCCCCCcchhhhHheec
Confidence 99999999999999999999999999987 4677777532 21 22223499999999999999999999999999999
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccc
Q 012529 246 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 325 (461)
Q Consensus 246 ~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~ 325 (461)
.||+|++++|+|+++|++|+++++.+++.|+++|++++.. .. .++.....||+||||+||+++|++.+.+. +
T Consensus 228 ~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~--~~---~l~~~~~~pf~ritY~eAieiL~~~~~e~---~ 299 (435)
T COG0017 228 PEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRD--NS---ELKRPESAPFPRITYKEAIEILEEKGFEK---V 299 (435)
T ss_pred ceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc--ch---hhcccccCCccEEEHHHHHHHHHhcCCcc---c
Confidence 9999999999999999999999999999999999887541 11 12211146899999999999999877643 7
Q ss_pred cccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCc-cceeccccccCCceeeechhhhcccHHHHHHHHHH
Q 012529 326 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 404 (461)
Q Consensus 326 ~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~-~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~ 404 (461)
+||+||++++|++|.++++. .|+||||||.+++||||+.++|+ +++.+|||++||+|||+|||||+|+++.|.+++++
T Consensus 300 ~~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~ 378 (435)
T COG0017 300 EWGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKE 378 (435)
T ss_pred CCCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHH
Confidence 89999999999999988765 57999999999999999988776 78999999999988999999999999999999999
Q ss_pred cCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 405 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 405 ~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
+|+++++|+|||++++||+|||||||||+|||+|++||++|||||+||||+++|+.
T Consensus 379 ~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r~~ 434 (435)
T COG0017 379 KGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLY 434 (435)
T ss_pred cCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999986
No 2
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=3.1e-109 Score=867.49 Aligned_cols=454 Identities=85% Similarity=1.332 Sum_probs=405.8
Q ss_pred CccccceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCc
Q 012529 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (461)
.+++..+++|+++....+.+....|++|+|+|||+++|.+|+++|++|+||++..+||||++++...++.+..+.|+.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs 162 (565)
T PLN02603 83 VGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGA 162 (565)
T ss_pred ccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCC
Confidence 45666778999998433334567899999999999999999999999999998778999998776566665433499999
Q ss_pred EEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 012529 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (461)
Q Consensus 85 ~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~ 164 (461)
+|.|+|+++++++++|.+||++++++|||+|++++|+++++++.+++|.++|||+|++.+++++|+||++++++|+||++
T Consensus 163 ~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~ 242 (565)
T PLN02603 163 SVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 242 (565)
T ss_pred EEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999998789999988999999999999999999999999999999999999999
Q ss_pred CCcEEEecceeecCCCCCCCcceeeeecCCCc-----------------------------ccccCCccccCCCccccCc
Q 012529 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSS-----------------------------REAAESPVDAIPKTKDGLI 215 (461)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~-----------------------------~~~~~s~~~~l~~~~~~~~ 215 (461)
+||+||+||+|++++||||++.|.|++..... .+|..|+.+. +.....
T Consensus 243 ~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~---~E~~~~ 319 (565)
T PLN02603 243 NGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLN---GETYAT 319 (565)
T ss_pred CCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHH---HHHHHh
Confidence 99999999999999999999999987643111 1111111000 011234
Q ss_pred CcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhh
Q 012529 216 DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLS 295 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 295 (461)
+++|||+||||||||+++|+|||+||||||+||+|.|++|+|+++|++|+++++.+++++.+++++++++.+.++.+.++
T Consensus 320 ~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~ 399 (565)
T PLN02603 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLS 399 (565)
T ss_pred cccceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999988887778888888
Q ss_pred hhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceecc
Q 012529 296 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 375 (461)
Q Consensus 296 ~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~f 375 (461)
+.++.||++|||+||+++|++.+.+++..++||.+|+.++|++|++.+++++||||+|||.+++||||+.++|++++++|
T Consensus 400 ~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~f 479 (565)
T PLN02603 400 DVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAM 479 (565)
T ss_pred HhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEE
Confidence 88888999999999999999887666666789999999999999987765479999999999999999888888899999
Q ss_pred ccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCC
Q 012529 376 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455 (461)
Q Consensus 376 dl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~ 455 (461)
||++||+|||+||+||+|+++++.++++++|+++++|+|||++++||+|||||||||||||+|++||.+|||||++|||+
T Consensus 480 DLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~ 559 (565)
T PLN02603 480 DMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRV 559 (565)
T ss_pred EEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 012529 456 PGSVEF 461 (461)
Q Consensus 456 ~~~~~~ 461 (461)
+++|+|
T Consensus 560 ~g~~~~ 565 (565)
T PLN02603 560 PGSAEF 565 (565)
T ss_pred CCCCCC
Confidence 999986
No 3
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=1.5e-104 Score=829.82 Aligned_cols=431 Identities=50% Similarity=0.897 Sum_probs=378.6
Q ss_pred CCCCCCEEEEEEEEeeeecCC--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCC----
Q 012529 25 LDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS---- 98 (461)
Q Consensus 25 ~~~~~~~v~v~G~v~~~R~~~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~---- 98 (461)
....|++|+|+|||+++|.+| +++|++||||||...+|||++++...+..+++ |+.|++|.|+|+|+.++.+
T Consensus 77 ~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~--l~~gs~v~v~G~v~~~~~~~~n~ 154 (586)
T PTZ00425 77 NKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK--CGVGCCFRFTGKLIISPVQNENK 154 (586)
T ss_pred cccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--CCCccEEEEEEEEEcCCccccCc
Confidence 356799999999999999997 49999999999877899999765445666777 9999999999999887543
Q ss_pred ----CccEEEEE-----eEEEEeccCC-C-CCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCc
Q 012529 99 ----KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF 167 (461)
Q Consensus 99 ----~~~~el~~-----~~i~vl~~~~-~-~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF 167 (461)
++++||.+ ++++|||++. + +||++++.++.+++|++||||+|++.++++||+||++..++|+||.++||
T Consensus 155 ~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF 234 (586)
T PTZ00425 155 KGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGF 234 (586)
T ss_pred CCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35699998 6999999983 3 49999988999999999999999999999999999999999999999999
Q ss_pred EEEecceeecCCCCCCCcceeeeecCCC----------------------------------------------------
Q 012529 168 IWISSPIITASDCEGAGEQFCVTTLIPS---------------------------------------------------- 195 (461)
Q Consensus 168 ~EV~TPiL~~~~~eg~~~~F~v~~~~~~---------------------------------------------------- 195 (461)
+||+||+|++++||||++.|.|+.....
T Consensus 235 ~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 314 (586)
T PTZ00425 235 LYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYL 314 (586)
T ss_pred EEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999653110
Q ss_pred ----------cccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHH
Q 012529 196 ----------SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQ 265 (461)
Q Consensus 196 ----------~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~ 265 (461)
..+|+.|+.+ + +..+.++++|||+||||||||+++|+||||||||||+||+|.|++++|+++|++|+
T Consensus 315 ~~~~~~yF~k~ayL~~S~QL--y-lE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~ 391 (586)
T PTZ00425 315 IDYKKDFFSKQAFLTVSGQL--S-LENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIK 391 (586)
T ss_pred ccccccccCcceEEEcCchH--H-HHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHH
Confidence 0111111110 0 01123469999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhccc
Q 012529 266 YVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG 345 (461)
Q Consensus 266 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~ 345 (461)
++++.+++.+.++|.+++.....++.+.|+..++.||++|||+||+++|++.+..+...+.||.+|..++|++|.+.+++
T Consensus 392 ~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~~~~ 471 (586)
T PTZ00425 392 YCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFK 471 (586)
T ss_pred HHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHHhcC
Confidence 99999999888888876544444566777777778999999999999999876544445789999999999999986555
Q ss_pred CCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCC
Q 012529 346 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 425 (461)
Q Consensus 346 ~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP 425 (461)
.|+||+|||.+++||||+.++|++++++|||++||+|||++|++|+|+++.+.+++++.|+++++|+|||++++||+||
T Consensus 472 -~PvFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pP 550 (586)
T PTZ00425 472 -KPVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHP 550 (586)
T ss_pred -CcEEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCC
Confidence 7999999999999999988887788999999999989999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 426 HAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 426 ~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
|||||||||||+|++||.+|||||++|||++++|++
T Consensus 551 hgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 551 HAGFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred CceEEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 999999999999999999999999999999999975
No 4
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.7e-104 Score=831.54 Aligned_cols=449 Identities=53% Similarity=0.906 Sum_probs=389.2
Q ss_pred CccccceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCC--eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCC
Q 012529 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~--~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (461)
-++|..+.+|++|+...+++..+.|++|+|+|||+++|.+|+ ++||+|||+|+.+.||||++++... ..+. |+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~~--~~~~--L~~ 101 (572)
T PLN02221 26 KAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLYD--LSTL--VAT 101 (572)
T ss_pred cccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchhh--HHhc--CCC
Confidence 456777889999986555567789999999999999999985 8999999999655699999865322 2235 999
Q ss_pred CcEEEEEeeEeecCC---CCccEEEEEeEEEEeccCCC-CCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHH
Q 012529 83 GASIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (461)
Q Consensus 83 g~~V~v~G~~~~~~~---~~~~~el~~~~i~vl~~~~~-~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~i 158 (461)
||+|.|+|+|++++. .++++||++++++|||+|.+ ++|++.+.++.+++|+++|||+|++.++++||+||.+.+++
T Consensus 102 ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~ai 181 (572)
T PLN02221 102 GTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFAT 181 (572)
T ss_pred ceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998764 45689999999999999974 59999888899999999999999999999999999999999
Q ss_pred HHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC--------------------------------------------
Q 012529 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP-------------------------------------------- 194 (461)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-------------------------------------------- 194 (461)
|+||.++||+||+||+|++++||||++.|.|+....
T Consensus 182 R~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
T PLN02221 182 HSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASK 261 (572)
T ss_pred HHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccch
Confidence 999999999999999999999999999999854320
Q ss_pred ---------------------------------------------CcccccCCccccCCCccccCcCcceeEEEeccccc
Q 012529 195 ---------------------------------------------SSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRA 229 (461)
Q Consensus 195 ---------------------------------------------~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~ 229 (461)
..++|++|+.+. +..+.++++|||+|||||||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy---~e~~~~~l~rVfeIgP~FRA 338 (572)
T PLN02221 262 EEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQ---VETYACALSSVYTFGPTFRA 338 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHH---HHHHHHhcCCeEEEccceec
Confidence 012222332111 01123469999999999999
Q ss_pred CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHH
Q 012529 230 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 309 (461)
Q Consensus 230 E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~e 309 (461)
|+++|+||||||||||+||+|.|++|+|+++|+||+++++.+.+.+.++++++......+.++.|+..++.||+||||.|
T Consensus 339 E~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~E 418 (572)
T PLN02221 339 ENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTE 418 (572)
T ss_pred CCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHH
Confidence 99999999999999999999999999999999999999999999988888776543333445666666678999999999
Q ss_pred HHHHHHHh---cccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeee
Q 012529 310 AIELLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELI 386 (461)
Q Consensus 310 a~~~l~~~---~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~ 386 (461)
|+++|++. |.+++..+.||.+++.++|++|.+.++. +|+||+|||.+++||||+.++|+..+++||||++|+|||+
T Consensus 419 Ai~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~ 497 (572)
T PLN02221 419 AIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELI 497 (572)
T ss_pred HHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEEC
Confidence 99999885 4444445689999999999999886555 7999999999999999887777778899999999999999
Q ss_pred chhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 387 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 387 ~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
+|++|+|+++.+.++++++|++++.|+|||+|++||+|||||||||||||+|++||.+|||||++|||++++|++
T Consensus 498 ~g~~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~~ 572 (572)
T PLN02221 498 GGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKADL 572 (572)
T ss_pred CHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=2.2e-104 Score=831.86 Aligned_cols=449 Identities=43% Similarity=0.802 Sum_probs=395.3
Q ss_pred CccccceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecC----------------------------------------
Q 012529 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQ---------------------------------------- 44 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~---------------------------------------- 44 (461)
..+|++|..++.|+...+++...+|++|.|.|||++.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 5689999999999999999999999999999999876442
Q ss_pred ------------------------------CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEee
Q 012529 45 ------------------------------SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (461)
Q Consensus 45 ------------------------------~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~ 94 (461)
|+++||+||||||.++||||++++...+. +. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 38999999999998889999987654332 45 999999999999998
Q ss_pred cCC--CCccEEEEEeEEEEeccCCC-CCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEe
Q 012529 95 SQG--SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (461)
Q Consensus 95 ~~~--~~~~~el~~~~i~vl~~~~~-~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~ 171 (461)
++. .++++||.+++++|||++.. +||++++.++++++|++||||+|++.++++||+||++++++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 833 36789999999999999864 599998888999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCcceeeeecCCC--------------------------------------------------------
Q 012529 172 SPIITASDCEGAGEQFCVTTLIPS-------------------------------------------------------- 195 (461)
Q Consensus 172 TPiL~~~~~eg~~~~F~v~~~~~~-------------------------------------------------------- 195 (461)
||+|++++||||++.|.|+.....
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 999999999999999988753210
Q ss_pred --------------------------------cccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcccccc
Q 012529 196 --------------------------------SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWM 243 (461)
Q Consensus 196 --------------------------------~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtm 243 (461)
.++|++|+.+. +..+.++|+|||+||||||||+++|+||||||||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLy---lE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtm 415 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLH---LESYACALGNVYTFGPRFRADRIDSARHLAEMWM 415 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHH---HHHHHHhcCceEEEccceecCCCCCCcccccccc
Confidence 01111111100 0112347999999999999999999999999999
Q ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhc-cccc
Q 012529 244 IEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFE 322 (461)
Q Consensus 244 lE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~-~~~~ 322 (461)
||+||+|.||+|+|+++|+||+++++.+++++.+++++++...+....+.|+..+..||+||||.||+++|++.+ .+++
T Consensus 416 lE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e 495 (633)
T PLN02532 416 VEVEMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFE 495 (633)
T ss_pred eeeeehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999998899887654444455666666778999999999999998763 3455
Q ss_pred ccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHH
Q 012529 323 FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 402 (461)
Q Consensus 323 ~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~ 402 (461)
..++||.||..++|++|++.+++ .|+||+|||.+++||||+.++|++++++|||+++|+|||++|++|+|+++.+.+++
T Consensus 496 ~~~~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ 574 (633)
T PLN02532 496 TKPEWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARI 574 (633)
T ss_pred cccccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHH
Confidence 55789999999999999997665 89999999999999999988888899999999999899999999999999999999
Q ss_pred HHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 403 DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 403 ~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
++.|+++++|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|+.
T Consensus 575 ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~~ 633 (633)
T PLN02532 575 EELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKANN 633 (633)
T ss_pred HHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999974
No 6
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=7.5e-104 Score=817.61 Aligned_cols=429 Identities=54% Similarity=0.936 Sum_probs=386.1
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC--cchhhhhhcCCCCCcEEEEEeeEeecCCCCccEE
Q 012529 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (461)
Q Consensus 26 ~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~e 103 (461)
.+.|++|+|+|||+++|.+|+++|++|||+++.+.||||++++. ..+..++. |+.||+|.|+|++.+++..++++|
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~E 90 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTGKVVESPGKGQPVE 90 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEEEEEcCCCCCCCEE
Confidence 46799999999999999999999999999994446999998763 22445666 999999999999999877778999
Q ss_pred EEEeEEEEeccCC-CCCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCC
Q 012529 104 LKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (461)
Q Consensus 104 l~~~~i~vl~~~~-~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg 182 (461)
|.+++++|||+|. .++|++.+++++++++++||||+|++.++++|++||.|++++|+||.++||+||+||+|+.++|||
T Consensus 91 l~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg 170 (453)
T TIGR00457 91 LQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEG 170 (453)
T ss_pred EEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCC
Confidence 9999999999997 359999888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeee---------ecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCH
Q 012529 183 AGEQFCVT---------TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 253 (461)
Q Consensus 183 ~~~~F~v~---------~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~ 253 (461)
++++|.|+ |++. ..+|++||.+.+.. +.+|++||||||||||||+++|+|||||||||||||+|.|+
T Consensus 171 ~~~~F~v~~~~~~~~~~~~~~-~~yL~~Spql~lq~---l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~ 246 (453)
T TIGR00457 171 AGELFRVSTDGIDFSQDFFGK-EAYLTVSGQLYLET---YALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANL 246 (453)
T ss_pred CCCceEecccccccchhccCC-ccccccCHHHHHHH---HhhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCH
Confidence 99999987 5554 46677887544332 23479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCCh
Q 012529 254 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 333 (461)
Q Consensus 254 ~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~ 333 (461)
+|+|+++|++++++++.+.+.++.+++.+.......+...+++.++.+|+++||+||+++|++.+..++....||.+|+.
T Consensus 247 ~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~~~~~g~~l~~ 326 (453)
T TIGR00457 247 NDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEYEDFWGDDLQT 326 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcCCCCCCCCCCc
Confidence 99999999999999999998888777776655555566777778889999999999999999987655555679999999
Q ss_pred HhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHH
Q 012529 334 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 413 (461)
Q Consensus 334 ~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~ 413 (461)
++|++|++.++. .|+||||||.+++|||++.++++++++||||+++|+|||+|||+|+|+++++.+++++.|++++.|+
T Consensus 327 ~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~ 405 (453)
T TIGR00457 327 EHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALN 405 (453)
T ss_pred HHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHH
Confidence 999999988765 7999999999999999877777789999999999989999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 414 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 414 ~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
|||++++||+|||||||||||||+|++||++|||||++|||+++||..
T Consensus 406 ~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~p 453 (453)
T TIGR00457 406 WYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453 (453)
T ss_pred HHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999963
No 7
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-102 Score=809.85 Aligned_cols=436 Identities=58% Similarity=0.995 Sum_probs=391.7
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC--cchhhhhhcCCCCCcEEEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~v 88 (461)
+..++++... .+.|++|+|+|||+++|.+|+++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 3457777532 478999999999999999999999999999975 888776543 34666777 999999999
Q ss_pred EeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcE
Q 012529 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (461)
Q Consensus 89 ~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~ 168 (461)
+|++.+++++++++||++++++|||+|...+|++.+++++++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877899999999999999876799999989999999999999999999999999999999999999999999
Q ss_pred EEecceeecCCCCCCCcceee---------eecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcc
Q 012529 169 WISSPIITASDCEGAGEQFCV---------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLA 239 (461)
Q Consensus 169 EV~TPiL~~~~~eg~~~~F~v---------~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~ 239 (461)
||+||+|++++|||++++|.| +|++. ..+|++||.+.+. +. .+|++||||||||||||+++|+||||
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~-~~~L~~Spql~lq-~l--~~g~~rVf~i~~~FR~E~~~t~rHl~ 229 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGK-EAYLTVSGQLYAE-AY--AMALGKVYTFGPTFRAENSNTRRHLA 229 (450)
T ss_pred EecCCceeccCCCCCCCceEeecccccccccccCC-CcccccCHHHHHH-HH--HhccCCeEEeeeccccCCCCCccccc
Confidence 999999999999999999998 56654 4678888765542 22 23699999999999999999999999
Q ss_pred ccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcc
Q 012529 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK 319 (461)
Q Consensus 240 EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~ 319 (461)
||||||||++|.|++++|+++|++|+++++.+.+.+.+++++++.+.+.+..+.++.+++.||++|||.||+++|++.+.
T Consensus 230 EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~ 309 (450)
T PRK03932 230 EFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGK 309 (450)
T ss_pred cccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988888888887766666666666656789999999999999998877
Q ss_pred cccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHH
Q 012529 320 KFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 399 (461)
Q Consensus 320 ~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~ 399 (461)
+++....||.+++..+|++|.+++++ .|+||+|||.+++|||++.++++++++||||++||+|||++|++|+|+++.+.
T Consensus 310 ~~~~~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~~El~~g~~r~~~~~~l~ 388 (450)
T PRK03932 310 KFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLE 388 (450)
T ss_pred CcCCCCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCCceeCCHHHHhhhHHHHH
Confidence 66555689999999999999885555 79999999999999998776655889999999999999999999999999999
Q ss_pred HHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 400 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
++++++|+++++++||+++++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 389 ~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 389 ARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 8
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-102 Score=752.20 Aligned_cols=426 Identities=56% Similarity=0.942 Sum_probs=388.1
Q ss_pred CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEE
Q 012529 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (461)
Q Consensus 24 ~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~e 103 (461)
+....|+++.|.|||+++|.+|+++|++|+|||+.++||||++++ +.+. +..|++|.|+|.+.-++.++|++|
T Consensus 15 ~~~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~~~~~q~ie 87 (446)
T KOG0554|consen 15 GHPRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVSKGAKQQIE 87 (446)
T ss_pred cCCCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEeccchheeee
Confidence 345789999999999999999999999999999999999999983 2345 999999999999999887889999
Q ss_pred EEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCC
Q 012529 104 LKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183 (461)
Q Consensus 104 l~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~ 183 (461)
+.+++|.++|.++++||++++.++++++|+..|||.|++...+++|+||.+..++|+||++++|++|+||+|+.++|||+
T Consensus 88 l~~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGa 167 (446)
T KOG0554|consen 88 LNAEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGA 167 (446)
T ss_pred eeeeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCC
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeecCCCcccccCCcc-ccC---CCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-HHHHHH
Q 012529 184 GEQFCVTTLIPSSREAAESPV-DAI---PKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 258 (461)
Q Consensus 184 ~~~F~v~~~~~~~~~~~~s~~-~~l---~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~dlm~ 258 (461)
+++|.|+.....+...-..|. +.. ..+.+++.+++|||++||+||||+|+++|||+||||+|.|+||++ ++|+|+
T Consensus 168 GE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~ 247 (446)
T KOG0554|consen 168 GEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMS 247 (446)
T ss_pred cceEEEEecCcccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHH
Confidence 999999865431111111111 000 012234456899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhc-ccccccccccccCChHhhh
Q 012529 259 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDLQSEHER 337 (461)
Q Consensus 259 ~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~-~~~~~~~~~g~~l~~~~e~ 337 (461)
++|.+++++++.++++|.+++++..++..++.+.+|+.....+|.++||+||+++|++.. ..++.+++||.+|++++|+
T Consensus 248 ~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~~fk~~~kwG~~l~~ehe~ 327 (446)
T KOG0554|consen 248 CAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVTKKFKTPPKWGIDLSTEHEK 327 (446)
T ss_pred HHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcccccccCcccccccchhhHH
Confidence 999999999999999999999998888888888999888888999999999999999987 6777889999999999999
Q ss_pred chhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHH
Q 012529 338 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 417 (461)
Q Consensus 338 ~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~ 417 (461)
+|++.+++ .||||+|||..++||||+.++|++++.+|||++||||||+|||+||.+ .+++++.|..+++|+||||
T Consensus 328 yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~eWYld 402 (446)
T KOG0554|consen 328 YLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER----KARLKERGLTREELEWYLD 402 (446)
T ss_pred HHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh----HHHHHhcCCCccccceehh
Confidence 99998886 899999999999999999999888999999999999999999999988 5678899999999999999
Q ss_pred HhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 418 a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
+++||.+||||||||+||++.+++|.+||||||||||.++.++.
T Consensus 403 LRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 403 LRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred hhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 99999999999999999999999999999999999999999863
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=6.9e-99 Score=776.95 Aligned_cols=419 Identities=28% Similarity=0.453 Sum_probs=368.8
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEEEEE
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~v~ 89 (461)
.+++|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++.+. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKPE------MDGQEVTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCchh------hCCCEEEEEEEEEEEecCCCcEEEEEEeCCee--EEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 45666543 67899999999999999999999999999974 999998653 23555666 9999999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccC---ChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCC
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~---~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~g 166 (461)
|+++.+++..+++||.+++++|||+|..++|++.++. +.+...++||||+|++.++++|++||++++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887766789999999999999987789877643 5566679999999999999999999999999999999999
Q ss_pred cEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcccccccee
Q 012529 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEP 246 (461)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~ 246 (461)
|+||+||+|+++++||++++|.++|++. ..+|++||.+.+..+.+ +|++||||||||||||+++|.|||||||||||
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v~~~~~-~~yL~~Spql~~q~li~--~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~ 228 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPITYFER-EAFLGQSPQLYKQQLMA--AGFERVYEIGPIFRAEEHNTHRHLNEATSIDI 228 (428)
T ss_pred CEEEeCCceecCCCCCCcceeeeEecCC-cEEECcCHHHHHHHHHh--cccCcEEEEecccccCCCCCccchheeeEeee
Confidence 9999999999999999999999999876 46788888765433333 36999999999999999998999999999999
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccc
Q 012529 247 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 326 (461)
Q Consensus 247 e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~ 326 (461)
|++|.|++|+|+++|++|+++++.+.+.++.+++..+.. + .....||++|||.||++++++.|.+ ..
T Consensus 229 e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~--------~-~~~~~pf~rity~eA~~~l~~~g~~----~~ 295 (428)
T TIGR00458 229 EMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK--------L-EKPEGKFVRLTYDEAIEMANAKGVE----IG 295 (428)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc--------c-ccCCCCceEEEHHHHHHHHHHcCCC----CC
Confidence 999999999999999999999999998877665443211 0 0124689999999999999987754 46
Q ss_pred ccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccC-CCccceeccccccCCceeeechhhhcccHHHHHHHHHHc
Q 012529 327 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 405 (461)
Q Consensus 327 ~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 405 (461)
||.+++..+|++|.+.+ . .|+||+|||.+++|||++.+ +++++++|||||++| +||+||++|+|+++.++++++++
T Consensus 296 ~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g-~Ei~~g~~r~~~~~~l~~~~~~~ 372 (428)
T TIGR00458 296 WGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKSFDLMYRD-LEISSGAQRIHLHDLLVERIKAK 372 (428)
T ss_pred CccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEEEEEEeCC-eEEeeCchhcCCHHHHHHHHHHc
Confidence 88899999999998755 3 79999999999999997655 455789999999999 59999999999999999999999
Q ss_pred CCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 406 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 406 ~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+++|+.
T Consensus 373 g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r~~ 427 (428)
T TIGR00458 373 GLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKRLT 427 (428)
T ss_pred CCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999985
No 10
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-98 Score=775.32 Aligned_cols=424 Identities=30% Similarity=0.508 Sum_probs=373.4
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC--cchhhhhhcCCCCCcEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~ 87 (461)
++|.|+++.+. ..|++|+|+|||+++|.+|+++|++|||++|. ||||++++. ..++.++. |+.||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 68899999874 68999999999999999999999999999975 999998764 23445667 99999999
Q ss_pred EEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCccc---CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 012529 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (461)
Q Consensus 88 v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~---~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~ 164 (461)
|+|++.+++...+++||++++++|||+|..++|+.... .+.++++++||||+|++.++++|++||.+++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877778999999999999998678875432 357788899999999999999999999999999999999
Q ss_pred CCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccc
Q 012529 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMI 244 (461)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtml 244 (461)
+||+||+||+|+++++||+++.|.++|++. ..+|++||.+.+..+.+ +|++||||||||||||+++|.|||||||||
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~~~~~~-~~~L~~Spql~~q~l~~--~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 229 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPIDYFEK-EAYLAQSPQLYKQMMVG--AGFERVFEIGPVFRAEEHNTSRHLNEYTSI 229 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeEEecCC-ceEecCCHHHHHHHHHh--cCCCcEEEEeceeeCCCCCCcccchhhhee
Confidence 999999999999999999999999998876 46788888665433333 359999999999999999888999999999
Q ss_pred eeeeccCC-HHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccc
Q 012529 245 EPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 323 (461)
Q Consensus 245 E~e~a~~d-~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~ 323 (461)
|||++|.| ++++|+++|++|+++++.+.+.+++++...+.. + ...+.||+++||.||++++++.|.+
T Consensus 230 E~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~--------~-~~~~~~f~rit~~eA~~~l~~~~~~--- 297 (437)
T PRK05159 230 DVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE--------L-PVPETPIPRITYDEAIEILKSKGNE--- 297 (437)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC--------C-CcCCCCceEeEHHHHHHHHHHcCCC---
Confidence 99999998 999999999999999999988877766554421 1 1234689999999999999887753
Q ss_pred cccccccCChHhhhchhhhcc---cCCCeeeeeCCccCCccccccCCC-ccceeccccccCCceeeechhhhcccHHHHH
Q 012529 324 LVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLE 399 (461)
Q Consensus 324 ~~~~g~~l~~~~e~~l~e~~~---~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~ 399 (461)
..||.+++..+|+.|.+.+. ...|+||+|||.+++|||++.+++ +++++|||||++|+ ||+||++|+||+++|+
T Consensus 298 -~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~-Ei~~g~~r~~d~~~~~ 375 (437)
T PRK05159 298 -ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLV 375 (437)
T ss_pred -CCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCE-EEeeCeEEcCCHHHHH
Confidence 46888999999998865331 113899999999999999876544 56899999999996 9999999999999999
Q ss_pred HHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 400 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
++++++|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 376 ~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~~~~~ 436 (437)
T PRK05159 376 ESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDRHRLT 436 (437)
T ss_pred HHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.2e-96 Score=766.32 Aligned_cols=431 Identities=25% Similarity=0.376 Sum_probs=362.0
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc----chhhhhhcCCCCCcEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASI 86 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~----~~~~~~~~~l~~g~~V 86 (461)
.+.+++|... ...|++|+|+|||+++|.+|+++|++|||+++. ||+|++.+.. .++.++. |+.||+|
T Consensus 65 ~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~~--iQ~v~~~~~~~~~~~~~~~~~--l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDS--VQAMAAVEGDVPKEMIDFIGQ--IPTESIV 135 (550)
T ss_pred eEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCcC--EEEEEECCCccCHHHHHHHhc--CCCCCEE
Confidence 3667777653 237999999999999999999999999999974 9999975421 1334556 9999999
Q ss_pred EEEeeEeecC-----CCCccEEEEEeEEEEeccCCCCCCCCcccC-----------ChhhhhcCccccCCCHHHHHHHHH
Q 012529 87 WIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVARV 150 (461)
Q Consensus 87 ~v~G~~~~~~-----~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~-----------~~~~~r~~r~l~~R~~~~~~~l~~ 150 (461)
.|+|+|++.+ +.++++||++++++|||+|..++|++.++. +.++..++||||+|++.++++|++
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~ 215 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHH
Confidence 9999998742 346789999999999999987789876542 345566999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccC
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E 230 (461)
||.|++++|+||.++||+||+||+|+++++||++++|.|+|++. ..+|++||.+. +|.. +.+|++||||||||||||
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~yf~~-~~~L~qSpql~-kq~l-i~~g~~rVfeI~p~FRaE 292 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNR-FAYLAQSPQLY-KQMV-LQGDVPRVFEVGPVFRSE 292 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCccccccccccCCC-CeecCCCHHHH-HHHH-HhcCCCCEEEEeCeEeCC
Confidence 99999999999999999999999999999999999999999876 57888887654 2221 123699999999999999
Q ss_pred CCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhcccccccc----------------------
Q 012529 231 NSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIE---------------------- 287 (461)
Q Consensus 231 ~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~---------------------- 287 (461)
+++|.|||||||||||||+|. +|+++|+++|+||.++++.+.+. ..+++.....++
T Consensus 293 ~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~ 371 (550)
T PTZ00401 293 NSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAVCQQYPFEPLVWKLTPERMKELGVGVIS 371 (550)
T ss_pred CCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhhccccccccccccccHHHHHhcCCCccc
Confidence 999999999999999999986 79999999999999999998765 333333211000
Q ss_pred ------chhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchh---hhcccCCCeeeee-CCcc
Q 012529 288 ------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---EEAFGGCPVIVSD-YPKE 357 (461)
Q Consensus 288 ------~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~---e~~~~~~p~~i~~-~P~~ 357 (461)
..+.+.+.. ++.+|+||+|.||+++|++.+. ..+.|++|++..+|++|. ++.++ .|+||+| ||.+
T Consensus 372 ~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~dl~~~~E~~L~~~v~~~~~-~~~fI~d~yP~~ 446 (550)
T PTZ00401 372 EGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTDDINTTNEKLLGKLVKERYG-TDFFISDRFPSS 446 (550)
T ss_pred ccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCcccccCchHHHHHHHHHHHhcC-CCEEEECCCChh
Confidence 001111221 3567999999999999999752 224688899999999884 33444 7999998 9999
Q ss_pred CCccccccC-CCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHH
Q 012529 358 IKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 436 (461)
Q Consensus 358 ~~pf~~~~~-~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRL 436 (461)
++|||++.+ +|+++++|||||++| +||+||++|+||++.|.++++++|++++.++|||+|++||+|||||||||||||
T Consensus 447 ~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERL 525 (550)
T PTZ00401 447 ARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERV 525 (550)
T ss_pred hCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHH
Confidence 999997655 456789999999999 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCccccccCCCCCCCCC
Q 012529 437 VQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 437 vm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
+|++||++|||||++|||+|+||.
T Consensus 526 vM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 526 VMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred HHHHhCCCcHheeecCCCCCCCCC
Confidence 999999999999999999999984
No 12
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=9.6e-96 Score=765.91 Aligned_cols=427 Identities=26% Similarity=0.419 Sum_probs=362.4
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-----chhhhhhcCCCCCcE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGAS 85 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-----~~~~~~~~~l~~g~~ 85 (461)
.+.|.+|.. .+.|++|+|+|||+++|.+|+++|++|||+++ +||||+..+.. .++.+.. |+.||+
T Consensus 69 ~~~i~~l~~------~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~ 138 (530)
T PLN02850 69 WTDVSDLGE------ELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRESV 138 (530)
T ss_pred EeEhhhcch------hhCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCCE
Confidence 466777765 37899999999999999999999999999986 49999976542 1233556 999999
Q ss_pred EEEEeeEeecC----CCCccEEEEEeEEEEeccCCCCCCCCccc--------------------CChhhhhcCccccCCC
Q 012529 86 IWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPRT 141 (461)
Q Consensus 86 V~v~G~~~~~~----~~~~~~el~~~~i~vl~~~~~~~Pl~~~~--------------------~~~~~~r~~r~l~~R~ 141 (461)
|.|+|+|++++ +.++++||++++++|||+|..++|++.++ .+.++..+|||||+|+
T Consensus 139 V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~ 218 (530)
T PLN02850 139 VDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRT 218 (530)
T ss_pred EEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcC
Confidence 99999998542 23458999999999999998779987654 1245556999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeE
Q 012529 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVY 221 (461)
Q Consensus 142 ~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVf 221 (461)
+.++++||+||.|++++|+||.++||+||+||+|+++++||++++|.|.|++. ..+|++||.+.+..+.. ++++|||
T Consensus 219 ~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~-~~~L~qSpql~kq~li~--~g~~rVf 295 (530)
T PLN02850 219 PANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQ-PACLAQSPQLHKQMAIC--GDFRRVF 295 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeeeccCCc-ceecCCCHHHHHHHHHH--hcCCceE
Confidence 99999999999999999999999999999999999999999999999998876 57788887655332222 3699999
Q ss_pred EEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcC
Q 012529 222 TFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 300 (461)
Q Consensus 222 eI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 300 (461)
|||||||||+++|+|||+|||||||||+|. +|+|+|+++|+||++++..+.+.+..+++.+....+... + +.+ .
T Consensus 296 eIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~---~-~~~-~ 370 (530)
T PLN02850 296 EIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEP---L-KYL-P 370 (530)
T ss_pred EEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcch---h-hhc-C
Confidence 999999999999999999999999999998 599999999999999999998887777665543221111 1 112 2
Q ss_pred CCccccHHHHHHHHHHhcccccccccccccCChHhhhchhh---hcccCCCeeeeeCCccCCccccccC-CCccceeccc
Q 012529 301 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMD 376 (461)
Q Consensus 301 ~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e---~~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fd 376 (461)
+++++||+||+++|++.|.+. .++.|++.++|+.|+. ..++..++||+|||..++|||++.+ +|+++++|||
T Consensus 371 ~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fD 446 (530)
T PLN02850 371 KTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFD 446 (530)
T ss_pred CcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhccccCCCCCeEEEEE
Confidence 678999999999999988642 4567899999988853 2233246788999999999997655 4567899999
Q ss_pred cccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCC
Q 012529 377 MLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456 (461)
Q Consensus 377 l~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~ 456 (461)
||++| +||+||++|+||++.|.++++++|++++.++|||+|++||+|||||||||||||+|++||++|||||++|||+|
T Consensus 447 l~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p 525 (530)
T PLN02850 447 VFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 525 (530)
T ss_pred EEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCCCC
Confidence 99999 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 012529 457 GSVE 460 (461)
Q Consensus 457 ~~~~ 460 (461)
+||.
T Consensus 526 ~rl~ 529 (530)
T PLN02850 526 QRLA 529 (530)
T ss_pred CCCC
Confidence 9984
No 13
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=7.1e-93 Score=741.63 Aligned_cols=427 Identities=21% Similarity=0.311 Sum_probs=348.8
Q ss_pred CccccceeeeccccCCCcC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhhhh
Q 012529 5 VGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKS 77 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~----~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~~~ 77 (461)
.++|.++++++++.+.+.+ .....|++|+|+|||+++|.+||++|++|+|++|. ||+|++++.. .++..+.
T Consensus 25 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g~--iQ~~~~~~~~~~~~~~~~~~ 102 (496)
T TIGR00499 25 LNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESGQ--IQLYVNKDDLPEDFYEFDEY 102 (496)
T ss_pred CCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCcc--EEEEEECCcCcHHHHHHHHh
Confidence 4678899999999876532 11244889999999999999999999999999974 9999987642 1333331
Q ss_pred cCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCCh---hhhhcCccccCCC-HHHHHHHHHHHH
Q 012529 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRT-NTFGAVARVRNA 153 (461)
Q Consensus 78 ~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~---~~~r~~r~l~~R~-~~~~~~l~~Rs~ 153 (461)
.|+.||+|.|+|++.+++++ ++||+++++++||+|. .|+|.+.+++ ++..++||||+|+ +.++++|++||+
T Consensus 103 -~l~~gd~V~v~G~~~~t~~g--elel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~ 177 (496)
T TIGR00499 103 -LLDLGDIIGVTGYPFKTKTG--ELSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSK 177 (496)
T ss_pred -cCCCCCEEEEEEEEEECCCC--cEEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 28999999999999998864 7999999999999997 4566555543 5555899999995 689999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeee--cCCCcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
|++++|+||.++||+||+||+|++++++++++||.+.+ ++. ..+|..||++.++++..+ |++||||||||||||+
T Consensus 178 i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~-~~yLriSpELylKrlivg--G~~rVfeIg~~FRnE~ 254 (496)
T TIGR00499 178 IIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDM-DLYLRIAPELYLKRLIVG--GFEKVYEIGRNFRNEG 254 (496)
T ss_pred HHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCC-ceEEecCHHHHHHHHHhC--CCCceEEEecceecCC
Confidence 99999999999999999999999988777789998754 333 467888888776655444 5999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
++ .||||||||||||++|+||+|+|+++|+||+++++.+.+.++..+. . ....++.||+++||.||+
T Consensus 255 ~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~---~---------~~~~~~~pf~rit~~eai 321 (496)
T TIGR00499 255 VD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYG---E---------LEIDFKKPFKRITMVEAI 321 (496)
T ss_pred CC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecC---c---------eeccCCCCceEEEHHHHH
Confidence 96 6999999999999999999999999999999999999876543211 0 011234589999999999
Q ss_pred HHHHH-hcccc---------------------cccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCc
Q 012529 312 ELLIK-AKKKF---------------------EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 369 (461)
Q Consensus 312 ~~l~~-~~~~~---------------------~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~ 369 (461)
+++.+ .|.++ .....||..+...++.++.+.+ . +|+||+|||.+++||++...+++
T Consensus 322 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l-~-~P~fv~dyP~~~splak~~~~~p 399 (496)
T TIGR00499 322 KKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTL-I-QPTFITHYPAEISPLAKRNPSNP 399 (496)
T ss_pred HHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhcc-C-CCEEEECCchhcCcccccCCCCC
Confidence 87643 23221 1112345566667777765544 4 79999999999999976655666
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHH------HcCCCcccH--HHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~------~~~~~~~~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
+.++|||||++|+ ||+||++|+||++.|+++++ +.|.+++.+ +|||+|++||||||||||||||||+|++|
T Consensus 400 ~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~GiGiDRLvMllt 478 (496)
T TIGR00499 400 EFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLT 478 (496)
T ss_pred CeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceEEEhHHHHHHHHh
Confidence 7899999999997 99999999999999998864 457776655 79999999999999999999999999999
Q ss_pred CCCCccccccCCCCCC
Q 012529 442 GVENIRDAIPFPRTPG 457 (461)
Q Consensus 442 g~~~Irdv~~FPr~~~ 457 (461)
|.+|||||++||+.+.
T Consensus 479 g~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 479 DSKSIRDVILFPAMRP 494 (496)
T ss_pred CCCcHheeccCCCCCC
Confidence 9999999999999764
No 14
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=7.6e-92 Score=736.78 Aligned_cols=437 Identities=19% Similarity=0.259 Sum_probs=365.4
Q ss_pred CccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-----chhhh-
Q 012529 5 VGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQV- 75 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-----~~~~~- 75 (461)
.++|.++++++++.+.+.+ +....|++|+|+|||+++|.+||++|++|+|++|. ||||++++.. .|..+
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g~--iQv~~~~~~~~~~~~~~~~~~ 158 (553)
T PLN02502 81 PYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGGK--IQLYADKKRLDLDEEEFEKLH 158 (553)
T ss_pred CCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCcc--EEEEEECccccchhHHHHHHH
Confidence 5789999999999876532 34467899999999999999999999999999974 9999986642 25554
Q ss_pred hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHH
Q 012529 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVR 151 (461)
Q Consensus 76 ~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~R 151 (461)
+. |+.||+|.|+|++.+++++ ++||.+++++|||+|. .|+|.+.++ .+...++||||++ ++.++++|++|
T Consensus 159 ~~--l~~gdiV~V~G~~~~t~~g--elel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~R 232 (553)
T PLN02502 159 SL--VDRGDIVGVTGTPGKTKKG--ELSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTR 232 (553)
T ss_pred hC--CCCCcEEEEEEEEEecCCC--CEEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHHHH
Confidence 35 9999999999999998865 8999999999999997 566666554 3444479999995 88899999999
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcceeEEEeccccc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRA 229 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~ 229 (461)
|.|+++||+||.++||+||+||+|++++++++++||.+ .+++. ..+|..||++.++++.++ |++|||||||||||
T Consensus 233 s~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~-~~yL~~Spel~lK~L~v~--g~~rVfeIg~~FRn 309 (553)
T PLN02502 233 AKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNM-DLYLRIATELHLKRLVVG--GFERVYEIGRQFRN 309 (553)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCc-ceeeecCHHHHHHHHHHh--ccCCEEEEcCeeeC
Confidence 99999999999999999999999999887777889964 22332 467888887666554443 59999999999999
Q ss_pred CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc-----chhccccccccchhhhhhhhhhcCCCcc
Q 012529 230 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDRLSTVAERDFVQ 304 (461)
Q Consensus 230 E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~-----~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 304 (461)
|+++ .||||||||||||++|.||+|+|+++|+||+++++.+.+.++ .++++..+|.+.++.+.+++..+.+++.
T Consensus 310 E~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~ 388 (553)
T PLN02502 310 EGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA 388 (553)
T ss_pred CCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc
Confidence 9997 599999999999999999999999999999999999986653 3455556777788888888888888876
Q ss_pred -ccHHHHHHHHHH----hcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceecccccc
Q 012529 305 -LSYTDAIELLIK----AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV 379 (461)
Q Consensus 305 -it~~ea~~~l~~----~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~ 379 (461)
++++++.+.|.+ .++++.....||..+...++.++.+.+ . +|+||+|||.+++|||++..+|+++++|||||+
T Consensus 389 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l-~-~PtFV~dyP~~~splak~~~~~p~~~erFELfi 466 (553)
T PLN02502 389 DLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETL-V-QPTFVLDHPVEMSPLAKPHRSKPGLTERFELFI 466 (553)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhc-C-CCEEEECCccccCcccccCCCCCCeEEEEEEEe
Confidence 888888765543 354444445788888888999887755 4 799999999999999987777888999999999
Q ss_pred CCceeeechhhhcccHHHHHHHHHHc----CC-Ccc--cH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCcccccc
Q 012529 380 PRIGELIGGSQREERLEYLEGRLDEL----KL-NRD--SY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 380 ~G~~Ei~~g~~r~~~~~~~~~~~~~~----~~-~~~--~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~ 451 (461)
+|+ ||+||++|.||+..|++++.++ +. +.+ .+ ++||+|++||||||||||||||||+|+|||..|||||++
T Consensus 467 ~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~ 545 (553)
T PLN02502 467 NGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIA 545 (553)
T ss_pred CCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEEehHHHHHHHHcCCcchheeec
Confidence 997 9999999999999888777532 22 122 13 669999999999999999999999999999999999999
Q ss_pred CCCCC
Q 012529 452 FPRTP 456 (461)
Q Consensus 452 FPr~~ 456 (461)
||+..
T Consensus 546 FP~~k 550 (553)
T PLN02502 546 FPAMK 550 (553)
T ss_pred CCcCC
Confidence 99865
No 15
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-91 Score=729.71 Aligned_cols=426 Identities=21% Similarity=0.311 Sum_probs=342.7
Q ss_pred CccccceeeeccccCCCcC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhhhh
Q 012529 5 VGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKS 77 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~----~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~~~ 77 (461)
.++|.++++++++...+.+ .....+++|+|+|||+++|.+|+++|++|||++|. ||||++++.. .|+.++.
T Consensus 26 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~ 103 (491)
T PRK00484 26 PNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSGR--IQLYVSKDDVGEEALEAFKK 103 (491)
T ss_pred CCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCcc--EEEEEECCcCCHHHHHHHhc
Confidence 4678999999999876432 11122478999999999999999999999999974 9999987642 3556667
Q ss_pred cCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 78 ~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
|+.||+|.|+|++.+++++ ++||.+++++|||+|.. |+|.+.++ .+...++||||+| ++.++++|++||+
T Consensus 104 --l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~--plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~ 177 (491)
T PRK00484 104 --LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLR--PLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSK 177 (491)
T ss_pred --CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCC--CCCcccccccchhhhccceeeehhcCHHHHHHHHHHHH
Confidence 9999999999999998765 89999999999999974 44444333 3444489999997 7889999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
+++++|+||.++||+||+||+|+++++++++++|.+ .+++. ..+|.+||++.++++.++ |++||||||||||||+
T Consensus 178 i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~-~~yL~~Spql~lk~l~v~--g~~rVfei~~~FR~E~ 254 (491)
T PRK00484 178 IISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDI-DLYLRIAPELYLKRLIVG--GFERVYEIGRNFRNEG 254 (491)
T ss_pred HHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCC-ceEeccCHHHHHHHHHhc--cCCcEEEEecceecCC
Confidence 999999999999999999999998877777799974 34443 467888887665544433 5999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
++ .||||||||||||++|.|++|+|+++|+||+++++.+.+.. .+.+.+.. ..++.||+++||.||+
T Consensus 255 ~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~--~i~~~~~~----------~~~~~pf~rity~eai 321 (491)
T PRK00484 255 ID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTT--KVTYQGTE----------IDFGPPFKRLTMVDAI 321 (491)
T ss_pred CC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc--eEecCCEe----------ecCCCCceEEEHHHHH
Confidence 96 59999999999999999999999999999999999987643 23222110 1134689999999998
Q ss_pred HHHHHh-----------------cccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 312 ELLIKA-----------------KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 312 ~~l~~~-----------------~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
+.+... +.+......||..++..++.+ +++.+. +|+||+|||.+++|||++.++|+++++|
T Consensus 322 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~Fi~dyP~~~~pf~k~~~~~~~~~~r 399 (491)
T PRK00484 322 KEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEF-VEPKLI-QPTFITDYPVEISPLAKRHREDPGLTER 399 (491)
T ss_pred HHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-hhhhcC-CcEEEECCChHHhhhhccCCCCCCeEEE
Confidence 876421 111111112344444555555 444444 7999999999999999877777789999
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHHHc------CCCcc-cH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCc
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRD-SY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~-~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~I 446 (461)
||||++|+ ||+||++|+||++.|+++++++ |.++. .+ +|||+|++||||||||||||||||+|++||.+||
T Consensus 400 FdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiDRLvm~ltg~~~I 478 (491)
T PRK00484 400 FELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTDSPSI 478 (491)
T ss_pred EEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHHHHHHHHhCCCcH
Confidence 99999997 9999999999999999988642 33332 24 6899999999999999999999999999999999
Q ss_pred cccccCCCCCC
Q 012529 447 RDAIPFPRTPG 457 (461)
Q Consensus 447 rdv~~FPr~~~ 457 (461)
|||++||+++.
T Consensus 479 rdvi~FP~~~~ 489 (491)
T PRK00484 479 RDVILFPLMRP 489 (491)
T ss_pred HhcccCCCCCC
Confidence 99999999875
No 16
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-90 Score=724.61 Aligned_cols=425 Identities=20% Similarity=0.308 Sum_probs=342.1
Q ss_pred CccccceeeeccccCCCcC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chh-hhh
Q 012529 5 VGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYD-QVK 76 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~----~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~-~~~ 76 (461)
.++|.++++++++.+.+++ .....|++|+|+|||+++|.+||++|++|+|++|. ||||++++.. .|. .++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g~--iQ~~~~~~~~~~~~~~~~~~ 114 (505)
T PRK12445 37 PNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGR--IQLYVARDSLPEGVYNDQFK 114 (505)
T ss_pred CCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCcc--EEEEEECCccchhhHHHHHh
Confidence 4678999999999876532 11244788999999999999999999999999974 9999986542 344 355
Q ss_pred hcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHHH
Q 012529 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRN 152 (461)
Q Consensus 77 ~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~Rs 152 (461)
. |+.||+|.|+|++.+++++ ++||.++++++||+|. .|+|.+.++ .+...++||||+| ++..+++|++||
T Consensus 115 ~--l~~Gd~V~v~G~~~~t~~g--elel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs 188 (505)
T PRK12445 115 K--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRS 188 (505)
T ss_pred c--CCCCCEEEEEEEEEecCCC--cEEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 6 9999999999999998855 8999999999999997 455555443 3444589999999 578999999999
Q ss_pred HHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcceeEEEecccccC
Q 012529 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230 (461)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E 230 (461)
+|+++||+||.++||+||+||+|++..+++++.||.+ .+++. ..+|.+||++.++++.++ |++||||||||||||
T Consensus 189 ~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~-~~yL~~SpELylKrlivg--G~~rVfeIg~~FRnE 265 (505)
T PRK12445 189 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDL-DMYLRIAPELYLKRLVVG--GFERVFEINRNFRNE 265 (505)
T ss_pred HHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCc-ceeeecCHHHHHHHHHhc--cCCcEEEEehhccCC
Confidence 9999999999999999999999998766666779953 23333 457888887666655444 599999999999999
Q ss_pred CCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHH
Q 012529 231 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 310 (461)
Q Consensus 231 ~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea 310 (461)
++ +.||||||||||||++|.||+|+|+++|+||+++++.+.+.+.... ... .+ -+..||+++||.||
T Consensus 266 ~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~--~~~--------~i--~~~~pf~rit~~ea 332 (505)
T PRK12445 266 GI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY--GEH--------VF--DFGKPFEKLTMREA 332 (505)
T ss_pred CC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccceec--Cce--------ec--cCCCCceEEEHHHH
Confidence 99 8999999999999999999999999999999999999876543211 000 00 12357888888888
Q ss_pred HHHHHH-------------------hcccccccccccc-cCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCcc
Q 012529 311 IELLIK-------------------AKKKFEFLVKWGC-DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 370 (461)
Q Consensus 311 ~~~l~~-------------------~~~~~~~~~~~g~-~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~ 370 (461)
++.+.. .|...+ ..|+. .+-......++++.+. +|+||+|||.+++|||++.+++++
T Consensus 333 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~vE~~l~-~P~Fv~dyP~~~splak~~~~~p~ 409 (505)
T PRK12445 333 IKKYRPETDMADLDNFDAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPE 409 (505)
T ss_pred HHHHhCCCCccccCCHHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHhhcC-CCEEEECCCchhCcccccCCCCCC
Confidence 877643 122111 12332 1333444455666665 899999999999999977666778
Q ss_pred ceeccccccCCceeeechhhhcccHHHHHHHHHHc------CCCcccH--HHHHHHhccCCCCCccccccHHHHHHHHcC
Q 012529 371 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 371 ~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~g 442 (461)
+++|||||++|+ ||+||++|+||+++|+++++++ |.+++.. +|||+|++||||||||||||||||+|++||
T Consensus 410 ~~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~GiGiDRLvMlltg 488 (505)
T PRK12445 410 ITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTN 488 (505)
T ss_pred ceEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEEhHHHHHHHHcC
Confidence 999999999996 9999999999999999998743 6555443 789999999999999999999999999999
Q ss_pred CCCccccccCCCCCC
Q 012529 443 VENIRDAIPFPRTPG 457 (461)
Q Consensus 443 ~~~Irdv~~FPr~~~ 457 (461)
.+|||||++||+++.
T Consensus 489 ~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 489 SHTIRDVILFPAMRP 503 (505)
T ss_pred CCchheEecCCCCCC
Confidence 999999999999874
No 17
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=1e-89 Score=722.75 Aligned_cols=440 Identities=15% Similarity=0.230 Sum_probs=362.2
Q ss_pred CccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCC-----cchhh-
Q 012529 5 VGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQ- 74 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~-----~~~~~- 74 (461)
.++|.++++++++.+.+++ +....+..|+|+|||+++|.+| +++|++|+|.+| .||||++++. ..|+.
T Consensus 105 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~~~ 182 (585)
T PTZ00417 105 PHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFAEC 182 (585)
T ss_pred CCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHHHH
Confidence 4678889999999876532 1112356799999999999998 799999999886 4999998753 23544
Q ss_pred hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 75 ~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
.+. |+.||+|.|+|.+.+++++ ++||.++++++|++|..++|..-.-.+.+...++||||+| ++.++++|++||+
T Consensus 183 ~~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~ 258 (585)
T PTZ00417 183 YDK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITRTK 258 (585)
T ss_pred Hhc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHHHH
Confidence 356 9999999999999887755 8999999999999998666654111233444479999998 7789999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC--CcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP--SSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~--~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
|+++||+||.++||+||+||+|+++.++++++||. ++++. ...+|..||++.++++.++ |++||||||||||||+
T Consensus 259 Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~n~~d~~lYLriSpEL~lKrLlvg--G~~rVfeIgp~FRnE~ 335 (585)
T PTZ00417 259 IINYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THHNDLDLDLYLRIATELPLKMLIVG--GIDKVYEIGKVFRNEG 335 (585)
T ss_pred HHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-ecccCCCcceEEeecHHHHHHHHHHh--CCCCEEEEcccccCCC
Confidence 99999999999999999999999987766778996 43322 2457888888777666554 5899999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc------------chhccccccccchhhhhhhhhhc
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------------EDMDFFNTWIEKGIIDRLSTVAE 299 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~------------~~l~~~~~~~~~~~~~~l~~~~~ 299 (461)
++ +||||||||||||++|+||+|+|+++|+||++++..+.+..+ .++++..+|...++.+.+++.++
T Consensus 336 ~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g 414 (585)
T PTZ00417 336 ID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTN 414 (585)
T ss_pred CC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhC
Confidence 96 799999999999999999999999999999999998875432 23445556777778888888877
Q ss_pred CCCc-----cccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 300 RDFV-----QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 300 ~~~~-----~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
.++. ..+++++++++++.|++++....||..++..++.++.+++.+ +|+||+|||.+++|||+...+|++.++|
T Consensus 415 ~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~-~PtFI~dyP~~~sPLak~~~~dp~v~eR 493 (585)
T PTZ00417 415 TKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN-KPFFIIEHPQIMSPLAKYHRSKPGLTER 493 (585)
T ss_pred CCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-CcEEEECCChhhCchhhhcCCCCCeEEe
Confidence 6653 258899999999988776555567778888888888776653 6999999999999999766667789999
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHH------HcCCCccc--H-HHHHHHhccCCCCCccccccHHHHHHHHcCCCC
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDS--Y-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 445 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~------~~~~~~~~--~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~ 445 (461)
||||++|+ ||+||+++++|+.+|+++++ +.| +++. + ++||+|++||||||||||||||||+|++||.+|
T Consensus 494 FELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~s 571 (585)
T PTZ00417 494 LEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNC 571 (585)
T ss_pred EEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcc
Confidence 99999997 99999999999999988664 335 4444 3 339999999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 012529 446 IRDAIPFPRTPG 457 (461)
Q Consensus 446 Irdv~~FPr~~~ 457 (461)
||||++||+++.
T Consensus 572 IrdVi~FP~~r~ 583 (585)
T PTZ00417 572 IKDVILFPTMRP 583 (585)
T ss_pred hheeecCCCCCC
Confidence 999999999864
No 18
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-88 Score=715.07 Aligned_cols=437 Identities=16% Similarity=0.209 Sum_probs=338.3
Q ss_pred CCccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc----chhhh-
Q 012529 4 KVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV- 75 (461)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~----~~~~~- 75 (461)
.+++|.++++++++.+.+++ +....++.|+|+|||+++|.+||++|++|||++|. ||||++++.. .+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G~--IQvv~~~~~~~~~~~~~~~~ 156 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGNE--LQVVGQVGEHFTREDLKKLK 156 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCce--EEEEEECCccCCHHHHHHHH
Confidence 57889999999999887642 11223557999999999999999999999999975 9999987642 24444
Q ss_pred hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCC-CCCC-C--ccc---CChhhhhcCccccCC-CHHHHHH
Q 012529 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKR---VSREFLRTKAHLRPR-TNTFGAV 147 (461)
Q Consensus 76 ~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~-~~Pl-~--~~~---~~~~~~r~~r~l~~R-~~~~~~~ 147 (461)
+. |+.||+|.|+|++.+++.+ ++||+++++++||++.. ..|+ + .+. .+.++..++||||+| ++.++++
T Consensus 157 ~~--l~~gdiV~V~G~v~~t~~G--eleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~i 232 (659)
T PTZ00385 157 VS--LRVGDIIGADGVPCRMQRG--ELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIET 232 (659)
T ss_pred hC--CCCCCEEEEEEEEEecCCc--eEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHH
Confidence 45 9999999999999998754 89999999999999642 2222 2 232 255666699999996 6779999
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeec-CCCcccccCCccccCCCccccCcCcceeEEEecc
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL-IPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPT 226 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~-~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~ 226 (461)
|++||+|+++||+||.++||+||+||+|+++++|+++++|.+.+. .....+|.+||++.++++..+ |++||||||||
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivg--G~erVyeIg~~ 310 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVG--GMERIYEIGKV 310 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhc--ccCCEEEEece
Confidence 999999999999999999999999999999999999999976432 123467888887666555443 59999999999
Q ss_pred cccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCcccc
Q 012529 227 FRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 306 (461)
Q Consensus 227 FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it 306 (461)
||||+++ .||||||||||||++|.||+|+|+++|+||++++..+.+.. .+.+... ...+....+ -+..||+|+|
T Consensus 311 FRnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~--~~~~~~~-~~~g~~~~i--~~~~Pf~Rit 384 (659)
T PTZ00385 311 FRNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTT--VVQIYPE-NAHGNPVTV--DLGKPFRRVS 384 (659)
T ss_pred ecCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCe--eEEeecc-ccCCCcccc--cCCCCceEEe
Confidence 9999996 89999999999999999999999999999999999987643 2222100 000000000 1223566666
Q ss_pred HHHHH-HH-----------------------HHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccc
Q 012529 307 YTDAI-EL-----------------------LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 362 (461)
Q Consensus 307 ~~ea~-~~-----------------------l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~ 362 (461)
+.+++ +. +++.|++++....+|..++..++.++.+.+ . +|+||+|||.+++||+
T Consensus 385 ~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l-~-qPtFI~dyP~e~sPLa 462 (659)
T PTZ00385 385 VYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRV-V-EPTFVMDHPLFMSPLA 462 (659)
T ss_pred HHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhh-C-CcEEEeCCccccCccc
Confidence 33332 22 222232222111223344444566555544 4 7999999999999998
Q ss_pred cccCCCccceeccccccCCceeeechhhhcccHHHHHHHHH-----HcCCCcccH---HHHHHHhccCCCCCccccccHH
Q 012529 363 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDSY---WWYLDLRHYGSVPHAGFGLGFE 434 (461)
Q Consensus 363 ~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~-----~~~~~~~~~---~~yl~a~~~G~pP~gG~giGid 434 (461)
+...+|++.++|||||++|+ ||+||++|+||+..|+++++ ..+.+++.+ +|||+|++||||||||||||||
T Consensus 463 k~~~~dp~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPPtgG~GIGID 541 (659)
T PTZ00385 463 KEQVSRPGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAGWGMGID 541 (659)
T ss_pred ccCCCCCCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCCCCceEEcHH
Confidence 76666778999999999996 99999999999999999993 445666655 8899999999999999999999
Q ss_pred HHHHHHcCCCCccccccCCCCCC
Q 012529 435 RLVQFATGVENIRDAIPFPRTPG 457 (461)
Q Consensus 435 RLvm~l~g~~~Irdv~~FPr~~~ 457 (461)
||+|++||.+|||||++||....
T Consensus 542 RLvMlltg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 542 RALMLLTNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred HHHHHHcCCcchhheecCccccc
Confidence 99999999999999999998764
No 19
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-88 Score=680.71 Aligned_cols=439 Identities=21% Similarity=0.302 Sum_probs=372.6
Q ss_pred CCccccceeeeccccCCCcC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhh-h
Q 012529 4 KVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ-V 75 (461)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~----~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~-~ 75 (461)
=.+.|.+++.+.++.+.+.+ .......+|+|+|||+++|.+||++|++|+|++| +||++++++. ..|+. .
T Consensus 32 yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~~ 109 (502)
T COG1190 32 YPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEALF 109 (502)
T ss_pred CCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHHH
Confidence 35678889999999876532 1112233599999999999999999999999997 4999999875 24554 4
Q ss_pred hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCChh---hhhcCccccCCCH-HHHHHHHHH
Q 012529 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE---FLRTKAHLRPRTN-TFGAVARVR 151 (461)
Q Consensus 76 ~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~---~~r~~r~l~~R~~-~~~~~l~~R 151 (461)
+. ++.||+|.|+|.+.+|+++ +++|.|+++++|+||+ .|+|.|.|++. ..-+.||+|+-.+ ..+.+|..|
T Consensus 110 ~~--~dlGDiigv~G~~~~T~~G--elSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~R 183 (502)
T COG1190 110 KK--LDLGDIIGVEGPLFKTKTG--ELSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKR 183 (502)
T ss_pred hc--cccCCEEeeeeeeeecCCC--ceEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55 8999999999999999877 8999999999999998 68888988773 3336899998865 699999999
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCC--cccccCCccccCCCccccCcCcceeEEEeccccc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS--SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRA 229 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~--~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~ 229 (461)
|+|+++||+||.++||+||+||+|+...+|++|.||. |+++.. +.++..+|+..|+++..| ||+||||||++|||
T Consensus 184 s~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~-ThhNald~dlyLRIApELyLKRliVG--G~erVfEIgr~FRN 260 (502)
T COG1190 184 SKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFI-THHNALDMDLYLRIAPELYLKRLIVG--GFERVFEIGRNFRN 260 (502)
T ss_pred HHHHHHHHHHHHHCCCeEeccccccccCCCcccccce-eeecccCCceEEeeccHHHHHHHHhc--Cchhheeecccccc
Confidence 9999999999999999999999999999999999995 777653 245566788888888777 49999999999999
Q ss_pred CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC-----cchhccccccccchhhhhhhhhhcCC-Cc
Q 012529 230 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-----KEDMDFFNTWIEKGIIDRLSTVAERD-FV 303 (461)
Q Consensus 230 E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~-----~~~l~~~~~~~~~~~~~~l~~~~~~~-~~ 303 (461)
|+. +.||||||||||+|+||+||+|+|+++|+|++++++.+.+.. ...+++.++|.+..+.+.+++..+.. +.
T Consensus 261 EGi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~ 339 (502)
T COG1190 261 EGI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDD 339 (502)
T ss_pred CCC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCccccc
Confidence 999 589999999999999999999999999999999999998743 25577788898999999998888873 45
Q ss_pred cccHHHHHHHHHHhcccccccc--cccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCC
Q 012529 304 QLSYTDAIELLIKAKKKFEFLV--KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR 381 (461)
Q Consensus 304 ~it~~ea~~~l~~~~~~~~~~~--~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G 381 (461)
..+.++|.++++++++...... .+|..++..+|..+.+++. +|+||+|||.++||++++++.+++.++|||||++|
T Consensus 340 ~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~li--qPTFv~d~P~eiSPLak~~~~~p~~teRFElfi~g 417 (502)
T COG1190 340 LFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLI--QPTFVTDHPVEISPLAKRHRSNPGLTERFELFIGG 417 (502)
T ss_pred cCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhc--CCceeecCccccCccccCCCCCcchhhhheeeecc
Confidence 6678899999999887654332 2455677778886555444 69999999999999998888888999999999999
Q ss_pred ceeeechhhhcccHHHHHHHHHH------cCCCccc-H-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCC
Q 012529 382 IGELIGGSQREERLEYLEGRLDE------LKLNRDS-Y-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453 (461)
Q Consensus 382 ~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~-~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FP 453 (461)
. ||+||+.+.||+..|.++|.+ .|-+.+. + ++|++|++||||||||+|||||||||+|||++||||||+||
T Consensus 418 ~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP 496 (502)
T COG1190 418 K-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFP 496 (502)
T ss_pred E-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCccccHHHHHHHHcCCCchhheeccc
Confidence 6 999999999999999999864 3444333 3 67999999999999999999999999999999999999999
Q ss_pred CCCC
Q 012529 454 RTPG 457 (461)
Q Consensus 454 r~~~ 457 (461)
-...
T Consensus 497 ~mr~ 500 (502)
T COG1190 497 AMRP 500 (502)
T ss_pred ccCC
Confidence 7653
No 20
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-87 Score=672.09 Aligned_cols=407 Identities=25% Similarity=0.406 Sum_probs=327.7
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCC-C-cchhhhhhcCCCCCcEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-A-EGYDQVKSGLITTGASIW 87 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~-~-~~~~~~~~~~l~~g~~V~ 87 (461)
|+|+|.+|... ++|++|+++|||++.|++|+++||||||.+|+ +|||++++ . ..|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 68999999985 89999999999999999999999999999987 99999984 2 34677878 99999999
Q ss_pred EEeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCccc--CChhhhh-cCccccCCCHHHHHHHHHHHHHHHH
Q 012529 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR--VSREFLR-TKAHLRPRTNTFGAVARVRNALAYA 157 (461)
Q Consensus 88 v~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~~--~~~~~~r-~~r~l~~R~~~~~~~l~~Rs~i~~~ 157 (461)
|+|+|...+. .++++||++++|+|||+|.+ +|++..+ ...+.+| +|||||||++.++..+++||+++.+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999988765 35689999999999999975 5655433 3444555 9999999999999999999999999
Q ss_pred HHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccc------cCcCcceeEEEecccccCC
Q 012529 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKD------GLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 158 iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~------~~~~~~rVfeI~~~FR~E~ 231 (461)
+|+||+++||+||+||+|+.|++|||.+ |.|+... +...||+|||++| |.+||+|+|||++|||+|+
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARD-fLVPSRv------~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDED 223 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARD-FLVPSRV------HPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDED 223 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccc-ccccccc------CCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccc
Confidence 9999999999999999999999999999 7776432 2345788888875 5679999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
.+.+|+ |||||+|+||+|.+-+|+|+++|+|++++++.+.+.. +..||+||||+||+
T Consensus 224 lRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~----------------------l~~pFprmtY~eAm 280 (585)
T COG0173 224 LRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIE----------------------LKTPFPRMTYAEAM 280 (585)
T ss_pred cccccC-CcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCCc----------------------cCCCcccccHHHHH
Confidence 999999 9999999999999999999999999999999876431 22344455555444
Q ss_pred HHH-------------------------------------------------------------HHhcccccccccccc-
Q 012529 312 ELL-------------------------------------------------------------IKAKKKFEFLVKWGC- 329 (461)
Q Consensus 312 ~~l-------------------------------------------------------------~~~~~~~~~~~~~g~- 329 (461)
+.+ +..|.+--.-+.+.+
T Consensus 281 ~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~ 360 (585)
T COG0173 281 RRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEED 360 (585)
T ss_pred HHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 321 111000000000000
Q ss_pred cCChHhhh-----------------------------------------------chhhhcccCCCeeeeeCCcc-----
Q 012529 330 DLQSEHER-----------------------------------------------YLTEEAFGGCPVIVSDYPKE----- 357 (461)
Q Consensus 330 ~l~~~~e~-----------------------------------------------~l~e~~~~~~p~~i~~~P~~----- 357 (461)
.+.....+ -|.++- ...++||+|||..
T Consensus 361 ~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~-~~~f~WVvDFPlfE~~ee 439 (585)
T COG0173 361 GLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKD-QFKFLWVVDFPLFEWDEE 439 (585)
T ss_pred CccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcc-cceEEEEEecCccCCccc
Confidence 00000000 011110 1269999999993
Q ss_pred -------CCccccccCCCc-------c--ceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHH
Q 012529 358 -------IKAFYMRQNDDG-------R--TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLD 417 (461)
Q Consensus 358 -------~~pf~~~~~~~~-------~--~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~ 417 (461)
++||.|+...+. . .+..|||++||+ ||+|||.|+|+++.|.+.|+..|++++ .++.+|+
T Consensus 440 ~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~ 518 (585)
T COG0173 440 EGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLE 518 (585)
T ss_pred cCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 789998765432 1 356899999998 999999999999999999999999987 5788999
Q ss_pred HhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCC
Q 012529 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 418 a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~ 459 (461)
|++||+|||||+|+|||||+|+|+|.+||||||+||++.+..
T Consensus 519 Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a~ 560 (585)
T COG0173 519 AFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQAA 560 (585)
T ss_pred HHhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCcccc
Confidence 999999999999999999999999999999999999987653
No 21
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-87 Score=647.64 Aligned_cols=424 Identities=26% Similarity=0.420 Sum_probs=367.4
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---c---hhhhhhcCCCCCc
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLITTGA 84 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~---~~~~~~~~l~~g~ 84 (461)
.+.+.||.. +..++.|.|+|||+..|.+||++|+.||++.+ ++||++..+.. . .+-++. |+.||
T Consensus 70 ~~~v~dl~~------~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~--is~ES 139 (533)
T KOG0556|consen 70 LTDVSDLDE------SNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGS--ISKES 139 (533)
T ss_pred eeehhhhhh------hcCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhh--cCcce
Confidence 345666655 36789999999999999999999999999985 59999976543 1 111445 99999
Q ss_pred EEEEEeeEeecC-----CCCccEEEEEeEEEEeccCCCCCCCCcccCC--------------------hhhhhcCccccC
Q 012529 85 SIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRVS--------------------REFLRTKAHLRP 139 (461)
Q Consensus 85 ~V~v~G~~~~~~-----~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~--------------------~~~~r~~r~l~~ 139 (461)
+|.|.|+|.+.+ +.+|++||++.+|.++|.+++.+|++.++.+ .++..+||.||+
T Consensus 140 iV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDL 219 (533)
T KOG0556|consen 140 IVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDL 219 (533)
T ss_pred EEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeec
Confidence 999999998864 2568999999999999999988998754322 123448999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCcccc--CcCc
Q 012529 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG--LIDW 217 (461)
Q Consensus 140 R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~--~~~~ 217 (461)
|++..+++||+++.+..++|+||..+||+|||||.|.++++||++.+|.|+|+.. .+++++||. |+ +|| .++|
T Consensus 220 RtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~-~A~LAQSPQ--Ly--KQMaI~gdf 294 (533)
T KOG0556|consen 220 RTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQ-KAYLAQSPQ--LY--KQMAICGDF 294 (533)
T ss_pred ccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEEeccC-cchhhcChH--HH--HHHHHhcch
Confidence 9999999999999999999999999999999999999999999999999999987 477888863 32 333 3589
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhh
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 296 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (461)
+|||+||||||||+|+|.||+.||+.||+||+|. .|+++|+.+.+++.++++.+.+.++++|+..+++++.+-.+-
T Consensus 295 ~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf--- 371 (533)
T KOG0556|consen 295 ERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKF--- 371 (533)
T ss_pred hheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc---
Confidence 9999999999999999999999999999999998 599999999999999999999999999988877664332221
Q ss_pred hhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchh----hhcccCCCeeeeeCCccCCccccccCCCc-cc
Q 012529 297 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RT 371 (461)
Q Consensus 297 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~----e~~~~~~p~~i~~~P~~~~pf~~~~~~~~-~~ 371 (461)
+ .+..+++|.|++++|++.|.+.. .-+||+++.|+.|. +++.. ++.++.+||..++|||+++++++ .+
T Consensus 372 -~-~~~lrl~~~e~v~mLreaGvE~g----~~dDlsTe~Ek~LG~lV~eky~t-dfyildkyP~avRPFYTmpd~~~p~y 444 (533)
T KOG0556|consen 372 -L-EPPLRLTFKEGVAMLREAGVEMG----DEDDLSTESEKKLGQLVREKYDT-DFYILDKYPLAVRPFYTMPDPENPRY 444 (533)
T ss_pred -C-CCceEeehHHHHHHHHHcCcccC----CccccCChhHHHHHHHHHHHhCC-cEEEEccCccccccccccCCCCCCCc
Confidence 1 35568999999999999987632 23589999999875 44544 79999999999999999887655 58
Q ss_pred eeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCcccccc
Q 012529 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 372 ~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~ 451 (461)
+++||++++| .||.+|.||+|+++.|.++++++|+++..+..|+|+++||+|||||+|||+||++|+++|+.|||..++
T Consensus 445 SnSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~Sl 523 (533)
T KOG0556|consen 445 SNSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSL 523 (533)
T ss_pred ccchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhcc
Confidence 9999999999 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 012529 452 FPRTPGSVE 460 (461)
Q Consensus 452 FPr~~~~~~ 460 (461)
|||+|+|+.
T Consensus 524 FPRDPkRL~ 532 (533)
T KOG0556|consen 524 FPRDPKRLT 532 (533)
T ss_pred CCCCccccC
Confidence 999999973
No 22
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=3e-86 Score=696.25 Aligned_cols=428 Identities=23% Similarity=0.338 Sum_probs=324.4
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
++|+|.++... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 67889999764 68999999999999999999999999999985 99999876444666777 9999999999
Q ss_pred eeEeecC-------CCCccEEEEEeEEEEeccCCCCCCCCcc-cCChhhhh-cCccccCCCHHHHHHHHHHHHHHHHHHH
Q 012529 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHK 160 (461)
Q Consensus 90 G~~~~~~-------~~~~~~el~~~~i~vl~~~~~~~Pl~~~-~~~~~~~r-~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ 160 (461)
|+|.+++ ..++++||.+++++|||+|. .+|++.. ..+.+.+| ++||||+|++.++++|++||++++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9998765 34568999999999999996 4677653 23444555 8999999999999999999999999999
Q ss_pred HhhhCCcEEEecceeecCCCCCCCcceeeeecC-CCcc-cccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCc
Q 012529 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLI-PSSR-EAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHL 238 (461)
Q Consensus 161 ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~-~~~~-~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl 238 (461)
||.++||+||+||+|+++++||+++ |.+.+.. .... .|.+||.+.+..+ +.+|++||||||||||||++++.||
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~~~~~~~~y~L~qSpQlykq~l--~v~G~ervfqI~~~FR~E~~~t~r~- 226 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVPSRVHKGEFYALPQSPQLFKQLL--MVSGVDRYYQIARCFRDEDLRADRQ- 226 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeeeeecCCCceeecCCCHHHHHHHH--HhcccCcEEEEcceeeCCCCCCCCC-
Confidence 9999999999999999999999876 6665431 2222 3666654332222 3346999999999999999998888
Q ss_pred cccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhh--------------------
Q 012529 239 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA-------------------- 298 (461)
Q Consensus 239 ~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-------------------- 298 (461)
||||||||||+|.|++|+|+++|+||+++++.+.+.. +..+|.+.++.++++++-
T Consensus 227 pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~~-----~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~ 301 (583)
T TIGR00459 227 PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGID-----LKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFK 301 (583)
T ss_pred cccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCCC-----CCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhc
Confidence 9999999999999999999999999999999886521 111111111111111110
Q ss_pred cC-------------------------CCccccHHHHHHHHHHhccc------cccccccc---ccCChH----------
Q 012529 299 ER-------------------------DFVQLSYTDAIELLIKAKKK------FEFLVKWG---CDLQSE---------- 334 (461)
Q Consensus 299 ~~-------------------------~~~~it~~ea~~~l~~~~~~------~~~~~~~g---~~l~~~---------- 334 (461)
+. .+.+-..++..++.+..|.+ ++....++ .-+...
T Consensus 302 ~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (583)
T TIGR00459 302 DSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILLERTD 381 (583)
T ss_pred cCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHHHHhC
Confidence 00 11111222223333333322 11100000 000000
Q ss_pred ----------------------------hh-hchhhhcccCCCeeeeeCCcc-----------CCccccccCCCcc----
Q 012529 335 ----------------------------HE-RYLTEEAFGGCPVIVSDYPKE-----------IKAFYMRQNDDGR---- 370 (461)
Q Consensus 335 ----------------------------~e-~~l~e~~~~~~p~~i~~~P~~-----------~~pf~~~~~~~~~---- 370 (461)
.+ .-+++... .+|+||+|||.. ++||+++..+|..
T Consensus 382 ~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~-~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~ 460 (583)
T TIGR00459 382 AQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDL-FSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEA 460 (583)
T ss_pred CCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCC-ceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhc
Confidence 00 01222211 269999999997 9999987665544
Q ss_pred -----ceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc----HHHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 371 -----TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 371 -----~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
.+.+|||++||+ ||+|||.|+||++.|++.|+..|+++++ +++||+|++||+|||||+|||||||+|+||
T Consensus 461 ~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt 539 (583)
T TIGR00459 461 APEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLT 539 (583)
T ss_pred ChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHc
Confidence 678999999997 9999999999999999999999997763 799999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCCC
Q 012529 442 GVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 442 g~~~Irdv~~FPr~~~~~ 459 (461)
|.+||||||+||++....
T Consensus 540 ~~~sIRDVIaFPKt~~g~ 557 (583)
T TIGR00459 540 GTDNIRDVIAFPKTTAAA 557 (583)
T ss_pred CCCchhheeecCCCCCCc
Confidence 999999999999998754
No 23
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-84 Score=728.37 Aligned_cols=424 Identities=19% Similarity=0.227 Sum_probs=340.5
Q ss_pred CCccccceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhh-hhcC
Q 012529 4 KVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGL 79 (461)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~-~~~~ 79 (461)
-.++|.++|+++++.+. ..|++|+|+|||+++|.+||++|++|+|++| .||||++++.. .+... +.
T Consensus 632 yp~~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~-- 701 (1094)
T PRK02983 632 YPVGVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA-- 701 (1094)
T ss_pred CCCCCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc--
Confidence 34678999999999864 6788999999999999999999999999996 49999987642 23333 34
Q ss_pred CCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCCh---hhhhcCccccCC-CHHHHHHHHHHHHHH
Q 012529 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVRNALA 155 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~---~~~r~~r~l~~R-~~~~~~~l~~Rs~i~ 155 (461)
|+.||+|.|+|++.+++++ ++||.+++++++++|. .|+|.+.+++ +...++||||+| ++.++++|++||+|+
T Consensus 702 l~~gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~ 777 (1094)
T PRK02983 702 VDLGDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVV 777 (1094)
T ss_pred CCCCCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHH
Confidence 9999999999999998865 7999999999999997 4666554433 334489999997 578999999999999
Q ss_pred HHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCC
Q 012529 156 YATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSN 233 (461)
Q Consensus 156 ~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~ 233 (461)
++||+||.++||+||+||+|+++.||++++||.+ ++++. +.+|.+||++.++++..+ |++||||||||||||+++
T Consensus 778 ~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~-~~yLriSPELylKrLivg--G~erVFEIg~~FRnE~~~ 854 (1094)
T PRK02983 778 RAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDM-DLYLRIAPELYLKRLCVG--GVERVFELGRNFRNEGVD 854 (1094)
T ss_pred HHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCc-cchhhcChHHHHHHHHhc--ccCceEEEcceecCCCCC
Confidence 9999999999999999999999999888999964 34443 467888887766655544 599999999999999996
Q ss_pred CCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHH
Q 012529 234 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 313 (461)
Q Consensus 234 t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~ 313 (461)
.||||||||||+|++|.||+|+|+++|+||+++++.+.+... +...+. .. ...+..++.||+++||.||++.
T Consensus 855 -~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~--~~~~~~----~~-~~~~i~~~~pf~rit~~eai~~ 926 (1094)
T PRK02983 855 -ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPV--VMRPDG----DG-VLEPVDISGPWPVVTVHDAVSE 926 (1094)
T ss_pred -CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcE--EeeCCc----cc-cccccccCCCceEEEHHHHHHH
Confidence 699999999999999999999999999999999999875432 111000 00 0000114568889999998863
Q ss_pred H------------------HHhcccccccccccc-cCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 314 L------------------IKAKKKFEFLVKWGC-DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 314 l------------------~~~~~~~~~~~~~g~-~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
. ++.+++.+ ..|+. ++..+.+..++++.+. +|+||+|||.+++||||+.++|++.++|
T Consensus 927 ~~g~~~~~~~~~~~l~~~~~~~~i~~~--~~~~~~~l~~~l~~~~ve~~~~-~P~Fv~dyP~~~spla~~~~~~p~~~er 1003 (1094)
T PRK02983 927 ALGEEIDPDTPLAELRKLCDAAGIPYR--TDWDAGAVVLELYEHLVEDRTT-FPTFYTDFPTSVSPLTRPHRSDPGLAER 1003 (1094)
T ss_pred HhCCCCCCCCCHHHHHHHHHHcCCCCC--CCCCHhHHHHHHHHHHHHhhcC-CCEEEECCCcccccccccCCCCCCeeEE
Confidence 2 22222221 12321 2223333444555555 8999999999999999887777889999
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHHH-----cCCCcccH---HHHHHHhccCCCCCccccccHHHHHHHHcCCCCc
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-----~~~~~~~~---~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~I 446 (461)
||||++|+ ||+||++|.||+.+|++++++ .+.|++.+ +|||+|++||||||||||||||||+|++||. ||
T Consensus 1004 FdL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~GiGiDRLvM~ltg~-sI 1081 (1094)
T PRK02983 1004 WDLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SI 1081 (1094)
T ss_pred EEEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEeeHHHHHHHHhCC-Ch
Confidence 99999997 999999999999999777754 45677766 6899999999999999999999999999996 99
Q ss_pred cccccCCCCCC
Q 012529 447 RDAIPFPRTPG 457 (461)
Q Consensus 447 rdv~~FPr~~~ 457 (461)
|||++||+.+.
T Consensus 1082 Rdvi~FP~~k~ 1092 (1094)
T PRK02983 1082 RETLPFPLVKP 1092 (1094)
T ss_pred heEecCCcCCC
Confidence 99999999764
No 24
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.4e-83 Score=676.25 Aligned_cols=437 Identities=21% Similarity=0.326 Sum_probs=317.6
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC--cchhhhhhcCCCCCcEE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASI 86 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V 86 (461)
.|+|+|.++... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++++. ..++.++. |+.||+|
T Consensus 58 ~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esvV 127 (652)
T PLN02903 58 SRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYVV 127 (652)
T ss_pred cCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCEE
Confidence 478899999874 78999999999999999999999999999985 999998653 22455667 9999999
Q ss_pred EEEeeEeecC-------CCCccEEEEEeEEEEeccCCCCCCCCcc-------cCChhhhhcCccccCCCHHHHHHHHHHH
Q 012529 87 WIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRN 152 (461)
Q Consensus 87 ~v~G~~~~~~-------~~~~~~el~~~~i~vl~~~~~~~Pl~~~-------~~~~~~~r~~r~l~~R~~~~~~~l~~Rs 152 (461)
.|+|+|.+++ ..++++||.+++++|||+|..++|++.. ..+.++.+++||||+|++.++++|++||
T Consensus 128 ~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs 207 (652)
T PLN02903 128 AVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRH 207 (652)
T ss_pred EEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHH
Confidence 9999998763 1236799999999999999655665432 2456667799999999999999999999
Q ss_pred HHHHHHHHHhhh-CCcEEEecceeecCCCCCCCcceeeeecCCC-cccccCCccccCCCccccCcCcceeEEEecccccC
Q 012529 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPS-SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230 (461)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~-~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E 230 (461)
++++++|+||.+ +||+||+||+|+++++||+++.|...+.... .++|.+||.+.+..+ +.+|++||||||||||||
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~L--m~~G~~RvFqIa~~FR~E 285 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQML--MVSGFDRYYQIARCFRDE 285 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHH--HhccCCcEEEEehhhccC
Confidence 999999999997 9999999999999999999876654443322 234666664332212 334699999999999999
Q ss_pred CCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC--------------------cchhcccccccc---
Q 012529 231 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC--------------------KEDMDFFNTWIE--- 287 (461)
Q Consensus 231 ~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~--------------------~~~l~~~~~~~~--- 287 (461)
++++.|| ||||||||||+|.|++|+|+++|+|++++++.+.+.. ++|+.+--...+
T Consensus 286 ~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~ 364 (652)
T PLN02903 286 DLRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSD 364 (652)
T ss_pred CCCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHH
Confidence 9998888 9999999999999999999999999999999876521 011110000000
Q ss_pred ----chh---hhhhh-----h---hhc-CCCccccHHHHHHHHHH---hc---c---ccc-c-cc---------------
Q 012529 288 ----KGI---IDRLS-----T---VAE-RDFVQLSYTDAIELLIK---AK---K---KFE-F-LV--------------- 325 (461)
Q Consensus 288 ----~~~---~~~l~-----~---~~~-~~~~~it~~ea~~~l~~---~~---~---~~~-~-~~--------------- 325 (461)
.++ ...+. + +.+ ..+.+-...+--+.+.+ .| . .+. . ..
T Consensus 365 ~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~ 444 (652)
T PLN02903 365 VFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQA 444 (652)
T ss_pred hhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHH
Confidence 000 00000 0 000 00100000000011111 01 0 000 0 00
Q ss_pred ---------cccccC---Ch---Hhh-------hchhhhc--c---cCCCeeeeeCCcc------------CCccccccC
Q 012529 326 ---------KWGCDL---QS---EHE-------RYLTEEA--F---GGCPVIVSDYPKE------------IKAFYMRQN 366 (461)
Q Consensus 326 ---------~~g~~l---~~---~~e-------~~l~e~~--~---~~~p~~i~~~P~~------------~~pf~~~~~ 366 (461)
+-|+.+ .. ..- ..|.+.+ . ...++||+|||.. ++||.++..
T Consensus 445 ~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~ 524 (652)
T PLN02903 445 EQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNP 524 (652)
T ss_pred HHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCCCCC
Confidence 001000 00 000 0011100 0 1268999999993 789998755
Q ss_pred CCc-----cceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhccCCCCCccccccHHHHH
Q 012529 367 DDG-----RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLV 437 (461)
Q Consensus 367 ~~~-----~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~~G~pP~gG~giGidRLv 437 (461)
+|- -.+.+|||++||+ ||+|||+|+|+++.|++.++..|++++ .++|||+|++||+|||||+|+|+|||+
T Consensus 525 ~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~alGldRlv 603 (652)
T PLN02903 525 EDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDRLV 603 (652)
T ss_pred cchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeecHHHHH
Confidence 442 1346899999997 999999999999999999999999876 589999999999999999999999999
Q ss_pred HHHcCCCCccccccCCCCCCCC
Q 012529 438 QFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 438 m~l~g~~~Irdv~~FPr~~~~~ 459 (461)
|+|+|.+||||||+||++....
T Consensus 604 mll~~~~~IrdviaFPKt~~g~ 625 (652)
T PLN02903 604 MLLAGAKSIRDVIAFPKTTTAQ 625 (652)
T ss_pred HHHcCCCchHheEecCCCCCcc
Confidence 9999999999999999988654
No 25
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.4e-82 Score=668.31 Aligned_cols=435 Identities=24% Similarity=0.358 Sum_probs=318.3
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v 88 (461)
.++|++.++... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++.....|+.++. |+.||+|.|
T Consensus 3 ~r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQV 72 (588)
T ss_pred ccceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEE
Confidence 368899999764 68999999999999999999999999999985 99999863334666777 999999999
Q ss_pred EeeEeecCCC-------CccEEEEEeEEEEeccCCCCCCCCcc--c-CChhhhhcCccccCCCHHHHHHHHHHHHHHHHH
Q 012529 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKK--R-VSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (461)
Q Consensus 89 ~G~~~~~~~~-------~~~~el~~~~i~vl~~~~~~~Pl~~~--~-~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~i 158 (461)
+|+|.+++.+ ++++||.+++++|||+|. ++|++.. . .+.+...++||||+|++.++++|++||++++++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~i 151 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAI 151 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHH
Confidence 9999987632 467999999999999998 6777542 2 234444499999999999999999999999999
Q ss_pred HHHhhhCCcEEEecceeecCCCCCCCcceeeeec--CCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCC
Q 012529 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTL--IPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSR 236 (461)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~--~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~r 236 (461)
|+||.++||+||+||+|+++++||+++ |.|... ....++|.+||.+.+..+ +.+|++||||||||||||+++++|
T Consensus 152 R~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~~~~~~~~~L~qSpql~kq~l--~~~g~~rvfqi~~~FR~E~~~~~r 228 (588)
T PRK00476 152 RNFLDDNGFLEIETPILTKSTPEGARD-YLVPSRVHPGKFYALPQSPQLFKQLL--MVAGFDRYYQIARCFRDEDLRADR 228 (588)
T ss_pred HHHHHHCCCEEEECCeeecCCCCCCcc-ceecccccCCceeecCCCHHHHHHHH--HhcccCceEEEeceeecCCCCCCc
Confidence 999999999999999999999998876 776532 111233566654332212 334699999999999999999998
Q ss_pred CccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC-c---------chhcccccccc--------chhhh------
Q 012529 237 HLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-K---------EDMDFFNTWIE--------KGIID------ 292 (461)
Q Consensus 237 Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~-~---------~~l~~~~~~~~--------~~~~~------ 292 (461)
|+ |||||||||+|.|++|+|+++|++|+++++.+.+.. . +.++.++...+ .++.+
T Consensus 229 ~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~ 307 (588)
T PRK00476 229 QP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSG 307 (588)
T ss_pred Cc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCC
Confidence 86 999999999999999999999999999999886521 0 00111110000 00000
Q ss_pred ------hhhh---hhcCCCc-------cccHHHHHHHHHHhcc------cccc-c----------------------ccc
Q 012529 293 ------RLST---VAERDFV-------QLSYTDAIELLIKAKK------KFEF-L----------------------VKW 327 (461)
Q Consensus 293 ------~l~~---~~~~~~~-------~it~~ea~~~l~~~~~------~~~~-~----------------------~~~ 327 (461)
.+++ +.+..++ +-..++..+..+..|. .... . .+-
T Consensus 308 f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~L~e~l~~k~ 387 (588)
T PRK00476 308 FKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAALLERTGAKD 387 (588)
T ss_pred chhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHHHHHHhCCCC
Confidence 0000 0000000 1111222222221110 0000 0 001
Q ss_pred cccC---ChHhh---h-------chhhhc-----ccCCCeeeeeCCcc------------CCccccccCCC--------c
Q 012529 328 GCDL---QSEHE---R-------YLTEEA-----FGGCPVIVSDYPKE------------IKAFYMRQNDD--------G 369 (461)
Q Consensus 328 g~~l---~~~~e---~-------~l~e~~-----~~~~p~~i~~~P~~------------~~pf~~~~~~~--------~ 369 (461)
|+.+ +...+ . .+.+.+ ....++||+|||.. ++||+++..+| +
T Consensus 388 GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p 467 (588)
T PRK00476 388 GDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDP 467 (588)
T ss_pred CCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCH
Confidence 1100 00000 0 011100 11368999999993 78999875543 2
Q ss_pred --cceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 370 --RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 370 --~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
-.+.+|||++||+ ||+|||+|+|+++.|++.++..|++++ .++|||+|++||+|||||+|+|+|||+|+|+|.
T Consensus 468 ~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~ 546 (588)
T PRK00476 468 GKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGA 546 (588)
T ss_pred HHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Confidence 1357899999997 999999999999999999999999886 589999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCC
Q 012529 444 ENIRDAIPFPRTPGSV 459 (461)
Q Consensus 444 ~~Irdv~~FPr~~~~~ 459 (461)
+||||||+||++....
T Consensus 547 ~~irdvi~fp~~~~g~ 562 (588)
T PRK00476 547 DSIRDVIAFPKTQSAQ 562 (588)
T ss_pred ccHHheeeccCCCCcc
Confidence 9999999999988654
No 26
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-83 Score=628.46 Aligned_cols=440 Identities=19% Similarity=0.254 Sum_probs=362.6
Q ss_pred CCCccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCC----cchhh
Q 012529 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYDQ 74 (461)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~----~~~~~ 74 (461)
+-+|+|..++++.++.+.+.+ +....+..|+|+|||+++|.+| |++|++|++++. +||||++.+. ..|.+
T Consensus 75 Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~--klQvm~~~~~~~~~~~F~~ 152 (560)
T KOG1885|consen 75 PYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGV--KLQVMANAKKITSEEDFEQ 152 (560)
T ss_pred CCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCe--EEEEEEehhhcCCHHHHHH
Confidence 457899999999998876532 4445677899999999999995 999999998863 6999999875 25665
Q ss_pred hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCCh---hhhhcCccccCCCH-HHHHHHHH
Q 012529 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRTN-TFGAVARV 150 (461)
Q Consensus 75 ~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~---~~~r~~r~l~~R~~-~~~~~l~~ 150 (461)
.. .+|+.||+|.|.|.+.+|+++ +++|.+.++.+|++|+. |+|.+..++ +..-+.||+|+-.| .++..|++
T Consensus 153 ~~-~~lkrGDiig~~G~pgrt~~g--ELSi~~~~~~lLspcLh--~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~ 227 (560)
T KOG1885|consen 153 LH-KFLKRGDIIGVSGYPGRTKSG--ELSIIPNEIILLSPCLH--MLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRI 227 (560)
T ss_pred HH-hhhhccCEEeeecCCCcCCCc--eEEEeecchheecchhc--cCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 42 239999999999999998877 89999999999999984 555544444 32336899998754 68999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCc--ccccCCccccCCCccccCcCcceeEEEecccc
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS--REAAESPVDAIPKTKDGLIDWSQVYTFGPTFR 228 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~--~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR 228 (461)
|++||+.||.||+++||+||+||+|...++++.|.|| ||+++..+ -++..+|++++++++.| |++||||||+.||
T Consensus 228 RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hndldm~LylRiAPEL~lK~LvVG--GldrVYEIGr~FR 304 (560)
T KOG1885|consen 228 RAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHNDLDMDLYLRIAPELYLKMLVVG--GLDRVYEIGRQFR 304 (560)
T ss_pred HHHHHHHHHHHhhhcCceEecchhhccccCccccCce-eecccccCcceeeeechHHHHHHHHhc--cHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999 57776533 34556688888888877 4999999999999
Q ss_pred cCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc------------chhccccccccchhhhhhhh
Q 012529 229 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------------EDMDFFNTWIEKGIIDRLST 296 (461)
Q Consensus 229 ~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~------------~~l~~~~~~~~~~~~~~l~~ 296 (461)
||+. +.+||||||.||+||||+||+|+|+++|+|+..+++.+.+..+ -++++-.+|.+..+++.|++
T Consensus 305 NEGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k 383 (560)
T KOG1885|consen 305 NEGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEK 383 (560)
T ss_pred hcCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHH
Confidence 9999 5899999999999999999999999999999999999987542 24667778888999999999
Q ss_pred hhcCCCcc---ccHHHHHHHHHHh----cccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCc
Q 012529 297 VAERDFVQ---LSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 369 (461)
Q Consensus 297 ~~~~~~~~---it~~ea~~~l~~~----~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~ 369 (461)
.++.+|+. +.-.|+-++|... +++.+.+-.-+..|+...+.+|...+ . .|+||.|+|..+||+++.+....
T Consensus 384 ~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~c-v-nPTFi~~hP~imSPLAK~hrs~~ 461 (560)
T KOG1885|consen 384 ELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTC-V-NPTFIIDHPQIMSPLAKYHRSKA 461 (560)
T ss_pred HhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhcccc-C-CCeeEcCCchhcCcccccccccc
Confidence 99988864 5566777766654 33332222223345555666565543 3 69999999999999999888778
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHHc------CCCcccH--HHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
+.++|||||++| .||||++.++||+-.|+++++++ |-|.... +.|+.|++||+||+||||+|||||+|+||
T Consensus 462 glteRFElFi~~-kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGIDRL~MllT 540 (560)
T KOG1885|consen 462 GLTERFELFIAG-KEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGIDRLVMLLT 540 (560)
T ss_pred chhhHHHHhhhh-HHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchhhhhhhhc
Confidence 899999999999 59999999999999999998654 3332222 77999999999999999999999999999
Q ss_pred CCCCccccccCCCCC
Q 012529 442 GVENIRDAIPFPRTP 456 (461)
Q Consensus 442 g~~~Irdv~~FPr~~ 456 (461)
+..|||||++||-..
T Consensus 541 ds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 541 DSNNIREVLLFPAMK 555 (560)
T ss_pred CCcchhheeeccccC
Confidence 999999999999643
No 27
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=1.2e-80 Score=661.91 Aligned_cols=434 Identities=21% Similarity=0.297 Sum_probs=309.7
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~ 85 (461)
.|+|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++. ..|+.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999875 78999999999999999999999999999985 999998653 23555667 999999
Q ss_pred EEEEeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCC--ccc-----------CChhhhh-cCccccCCCHHH
Q 012529 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR-----------VSREFLR-TKAHLRPRTNTF 144 (461)
Q Consensus 86 V~v~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~--~~~-----------~~~~~~r-~~r~l~~R~~~~ 144 (461)
|.|+|+|.+++. .++++||.+++++||++|.+ +|++ .+. ...+.+| ++||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~~-lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASEA-LPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCCC-CCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999988531 23679999999999999963 4544 331 1234455 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCc-ccccCCccccCCCccccCcCcceeEEE
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS-REAAESPVDAIPKTKDGLIDWSQVYTF 223 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~-~~~~~s~~~~l~~~~~~~~~~~rVfeI 223 (461)
+++|++||++++++|+||.++||+||+||+|+++++|||++.+...+..... +.|.+||.+.+..+ +.+|++|||||
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~l--m~~G~~rvfqI 230 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLL--MIAGFERYFQL 230 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHH--HhccCCcEEEE
Confidence 9999999999999999999999999999999999999988743322222222 23566654332211 33479999999
Q ss_pred ecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC----------cchhccccccccchh---
Q 012529 224 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC----------KEDMDFFNTWIEKGI--- 290 (461)
Q Consensus 224 ~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~----------~~~l~~~~~~~~~~~--- 290 (461)
|||||||++++.|| ||||||||||+|.|++|+|+++|+|++++++ +.+.. .+.++.++... +++
T Consensus 231 ~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~~~~~~~pf~r~ty~eA~~~yG~DK-PDlR~~ 307 (706)
T PRK12820 231 ARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFA-IGGIALPRPFPRMPYAEAMDTTGSDR-PDLRFD 307 (706)
T ss_pred echhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHH-hcCcCCCCCceEEEHHHHHHHhCCCC-CccccC
Confidence 99999999998777 9999999999999999999999999999986 22110 01111111000 000
Q ss_pred ------hh--------hhhh------------hhcC--CCccccHHHHH--HHHHHhcc------cccc-c---------
Q 012529 291 ------ID--------RLST------------VAER--DFVQLSYTDAI--ELLIKAKK------KFEF-L--------- 324 (461)
Q Consensus 291 ------~~--------~l~~------------~~~~--~~~~it~~ea~--~~l~~~~~------~~~~-~--------- 324 (461)
.+ .++. +.+. .+.+-..++++ +..+..|. .... .
T Consensus 308 ~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~ 387 (706)
T PRK12820 308 LKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFF 387 (706)
T ss_pred cEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCCcCCchhccC
Confidence 00 0000 0000 01110011101 11111110 0000 0
Q ss_pred -------------ccccccC---C----hHhhhch-------hhhc-----ccCCCeeeeeCCc-----------cCCcc
Q 012529 325 -------------VKWGCDL---Q----SEHERYL-------TEEA-----FGGCPVIVSDYPK-----------EIKAF 361 (461)
Q Consensus 325 -------------~~~g~~l---~----~~~e~~l-------~e~~-----~~~~p~~i~~~P~-----------~~~pf 361 (461)
.+-|+.+ . ...-..| .+.+ ....++||+|||. .++||
T Consensus 388 ~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPF 467 (706)
T PRK12820 388 SADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDGGVTSSHHPF 467 (706)
T ss_pred CHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCCCCeeeeeCCC
Confidence 0011100 0 0000001 0000 0136899999999 47999
Q ss_pred ccccCCC--------cc--ceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhccCCCCCc
Q 012529 362 YMRQNDD--------GR--TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHA 427 (461)
Q Consensus 362 ~~~~~~~--------~~--~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~~G~pP~g 427 (461)
+++..+| +. .+.+|||++||+ ||+|||+|+|+++.|++.|+..|++++ .+++||+|++||+||||
T Consensus 468 T~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphg 546 (706)
T PRK12820 468 TAPDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHG 546 (706)
T ss_pred CCcCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9875432 11 346899999997 999999999999999999999999875 47899999999999999
Q ss_pred cccccHHHHHHHHcCCCCccccccCCCCCCCC
Q 012529 428 GFGLGFERLVQFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 428 G~giGidRLvm~l~g~~~Irdv~~FPr~~~~~ 459 (461)
|+|+|+|||+|+|+|.+||||||+||++....
T Consensus 547 G~a~G~dRlvm~l~~~~sirdviaFPK~~~g~ 578 (706)
T PRK12820 547 GIALGLDRVVSMILQTPSIREVIAFPKNRSAA 578 (706)
T ss_pred ceeccHHHHHHHHcCCccHHHhcccCCCCCCC
Confidence 99999999999999999999999999987653
No 28
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-81 Score=604.13 Aligned_cols=415 Identities=29% Similarity=0.500 Sum_probs=365.0
Q ss_pred CCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEeeEeecCCC---Cc
Q 012529 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQGS---KQ 100 (461)
Q Consensus 25 ~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~~~~~~~~---~~ 100 (461)
.++.|++|+|.||||++|++++++||+||||+|. ||||++.+.. .|+.+ . |..++.|.|.|++.+.|.+ .+
T Consensus 119 ~~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~apg 193 (545)
T KOG0555|consen 119 TENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAPG 193 (545)
T ss_pred ccccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCCC
Confidence 3578999999999999999999999999999987 9999998764 34444 4 9999999999999998755 35
Q ss_pred cEEEEEeEEEEeccCCCC---CCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeec
Q 012529 101 KVELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA 177 (461)
Q Consensus 101 ~~el~~~~i~vl~~~~~~---~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (461)
+.||.|+-++|++.|... .|+. +..+.+.+.+||||-+|....+.+++.|+.+++++|++|.+.||.||.+|.|+.
T Consensus 194 ghEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQ 272 (545)
T KOG0555|consen 194 GHELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQ 272 (545)
T ss_pred CceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEE
Confidence 799999999999998764 4554 346778888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHH
Q 012529 178 SDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 257 (461)
Q Consensus 178 ~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm 257 (461)
...||++.+|.++|++. .+++.+|. +|++ ......+++||+|.++||||.|+|+|||+|||++|+|++|.+++++|
T Consensus 273 TQVEGGsTLFkldYyGE-eAyLTQSS--QLYL-EtclpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll 348 (545)
T KOG0555|consen 273 TQVEGGSTLFKLDYYGE-EAYLTQSS--QLYL-ETCLPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLL 348 (545)
T ss_pred EEecCcceEEeecccCc-hhhccchh--HHHH-HHhhhhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHH
Confidence 99999999999999998 45666652 2221 12222378999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcc-hhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc--ccccccCChH
Q 012529 258 ACATAYLQYVVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL--VKWGCDLQSE 334 (461)
Q Consensus 258 ~~~e~li~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~--~~~g~~l~~~ 334 (461)
+.+|+|+...+..+++.... .|..+++.+ +.+..||.|+.|+|||+.|++++++.+.. .++|+|+...
T Consensus 349 ~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI~eA 419 (545)
T KOG0555|consen 349 DRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDIPEA 419 (545)
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccchhhH
Confidence 99999999999999876432 333333211 23568999999999999999998765443 5789999999
Q ss_pred hhhchhhhcccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHH
Q 012529 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 413 (461)
Q Consensus 335 ~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~ 413 (461)
.|+++.+..+ .|+|++.||.++++|||+... |+..+++.|+++||+|||+|||+|+.+.+++.+.++..|+|+.+|.
T Consensus 420 aER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYY 497 (545)
T KOG0555|consen 420 AERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYY 497 (545)
T ss_pred HHHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCce
Confidence 9999998764 799999999999999998765 5578999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 414 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 414 ~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
||+|.++||..||||+|||+||++|||++..+||||.+|||-.+||.
T Consensus 498 Wy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 498 WYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred EEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 99999999999999999999999999999999999999999999995
No 29
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=3.1e-78 Score=603.20 Aligned_cols=319 Identities=43% Similarity=0.739 Sum_probs=283.0
Q ss_pred CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccc
Q 012529 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (461)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~ 205 (461)
+++++++++||||+|++..++++++||.|++++|+||.++||+||+||+|+.+++|+++++|.++|++. ..+|++||++
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~-~~yL~~Spql 80 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGK-PAYLAQSPQL 80 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCC-cceecCCHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999988876 5778889876
Q ss_pred cCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccc
Q 012529 206 AIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 284 (461)
Q Consensus 206 ~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~ 284 (461)
.++.+.. +++|||+||||||||++++.||||||||||||++|. |++|+|+++|++|+++++.+.+.++.++.++..
T Consensus 81 ~lk~l~~---~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~ 157 (322)
T cd00776 81 YKEMLIA---ALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ 157 (322)
T ss_pred HHHHHHH---hhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc
Confidence 6544333 389999999999999999999999999999999999 999999999999999999999888776654310
Q ss_pred cccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccc
Q 012529 285 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR 364 (461)
Q Consensus 285 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~ 364 (461)
...+...+..||+++||.||++++++.+.. ....||.+++..+|++|++.+.+ +|+||+|||.+++|||++
T Consensus 158 ------~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~~e~~l~~~~~~-~p~fi~~~P~~~~pfy~~ 228 (322)
T cd00776 158 ------LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTEHERLLGEIVKG-DPVFVTDYPKEIKPFYMK 228 (322)
T ss_pred ------cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHHHHHHHHHHhCC-CcEEEECCccccCCceee
Confidence 011111235689999999999999987753 22579999999999999886534 799999999999999987
Q ss_pred cCCC-ccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 365 QNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 365 ~~~~-~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
.+++ +++++|||||++|++||+||++|++|+++|.++++++|++++.++|||+|+++|+|||||||||||||+|++||.
T Consensus 229 ~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~ 308 (322)
T cd00776 229 PDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGL 308 (322)
T ss_pred ecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCC
Confidence 7654 478999999999966999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCC
Q 012529 444 ENIRDAIPFPRTPG 457 (461)
Q Consensus 444 ~~Irdv~~FPr~~~ 457 (461)
+|||||++|||+++
T Consensus 309 ~~Irdv~~FPr~~~ 322 (322)
T cd00776 309 DNIREAILFPRDPK 322 (322)
T ss_pred CchheEeecCCCCC
Confidence 99999999999985
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=2.8e-75 Score=584.04 Aligned_cols=316 Identities=27% Similarity=0.462 Sum_probs=273.0
Q ss_pred CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCC-------CcceeeeecCCCccc
Q 012529 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA-------GEQFCVTTLIPSSRE 198 (461)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~-------~~~F~v~~~~~~~~~ 198 (461)
.+.++..++|++++|++.++++|++||+|++++|+||.++||+||+||+|++++++|. ...|.++|++. ..+
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~-~~y 86 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGV-EYY 86 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCC-cee
Confidence 3566677899999999999999999999999999999999999999999999877633 22455566655 567
Q ss_pred ccCCccccCCCccccCcCcceeEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 012529 199 AAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 276 (461)
Q Consensus 199 ~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~ 276 (461)
+++||.+. +++..+ +++||||||||||||++++ .||||||||||||++|.|++|+|+++|++|+++++.+.+.++
T Consensus 87 L~~Spql~-k~ll~~--g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~ 163 (335)
T PRK06462 87 LADSMILH-KQLALR--MLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHE 163 (335)
T ss_pred eccCHHHH-HHHHHh--hcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 88887654 343332 4899999999999999977 699999999999999999999999999999999999998887
Q ss_pred chhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCc
Q 012529 277 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 356 (461)
Q Consensus 277 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~ 356 (461)
+++..++... ..++.||++|||.||+++|++.+.. ..++.+++..+|++|.+.+ + .||||+|||.
T Consensus 164 ~~i~~~~~~~---------~~~~~p~~rit~~eA~~~l~~~~~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~~yP~ 228 (335)
T PRK06462 164 DELEFFGRDL---------PHLKRPFKRITHKEAVEILNEEGCR----GIDLEELGSEGEKSLSEHF-E-EPFWIIDIPK 228 (335)
T ss_pred HHHHhcCCcc---------ccCCCCCeEEEHHHHHHHHHhcCCC----cchHHHHhHHHHHHHHHHh-C-CCEEEECCCh
Confidence 7776554311 0124689999999999999887654 2346788889999998754 4 7999999999
Q ss_pred cCCccccccCC-CccceeccccccC-CceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHH
Q 012529 357 EIKAFYMRQND-DGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFE 434 (461)
Q Consensus 357 ~~~pf~~~~~~-~~~~~~~fdl~~~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGid 434 (461)
+++|||++.++ ++.+++|||||++ |+|||++|++|+|+++++.++++++|++++.++|||+|++||+|||||||||||
T Consensus 229 ~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGid 308 (335)
T PRK06462 229 GSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVE 308 (335)
T ss_pred hhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHH
Confidence 99999987654 4467889999997 779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccccccCCCCCCCCC
Q 012529 435 RLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 435 RLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
||+|++||.+|||||++|||++++..
T Consensus 309 RLvm~~~g~~~Irdv~~FPr~~g~~~ 334 (335)
T PRK06462 309 RLTRYICGLRHIREVQPFPRVPGIVA 334 (335)
T ss_pred HHHHHHcCCCchheeeeccCCCCCCC
Confidence 99999999999999999999999863
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=1.9e-75 Score=588.91 Aligned_cols=311 Identities=38% Similarity=0.645 Sum_probs=256.1
Q ss_pred hhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeee-----ecCCCcccccCC
Q 012529 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT-----TLIPSSREAAES 202 (461)
Q Consensus 128 ~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~-----~~~~~~~~~~~s 202 (461)
.++++++||+|+|++.++++|++||.+++++|+||.++||+||+||+|++++++|++++|.|+ +++ ...+|++|
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~-~~~~L~~S 80 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFG-EPAYLTQS 80 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETT-EEEEE-SS
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcc-cceecCcC
Confidence 467889999999999999999999999999999999999999999999999999999999998 776 35788899
Q ss_pred ccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccc
Q 012529 203 PVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 282 (461)
Q Consensus 203 ~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~ 282 (461)
|.+.++.+.. +|++||||||||||||+++|.||||||||||||++|.|++++|+++|+||+++++.+.+..+. ...
T Consensus 81 pql~~k~ll~--~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~-~~~- 156 (335)
T PF00152_consen 81 PQLYLKRLLA--AGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKE-LSL- 156 (335)
T ss_dssp SHHHHHHHHH--TTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHH-HHT-
T ss_pred hHHHHhhhcc--ccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcc-ccc-
Confidence 8765543333 359999999999999999999999999999999999999999999999999999998754211 110
Q ss_pred cccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccc-------------cccccccCChHhhhchhhhcccCCCe
Q 012529 283 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF-------------LVKWGCDLQSEHERYLTEEAFGGCPV 349 (461)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~-------------~~~~g~~l~~~~e~~l~e~~~~~~p~ 349 (461)
...+..+|++++|.||++++...+.+... ...+|.++...+|+.|++.... .|+
T Consensus 157 ------------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~-~p~ 223 (335)
T PF00152_consen 157 ------------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFT-DPV 223 (335)
T ss_dssp ------------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSS-SEE
T ss_pred ------------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccC-CcE
Confidence 11233569999999999998876432211 0123566778888888765554 899
Q ss_pred eeeeCCccCCccccccCCCc-cceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc----HHHHHHHhccCCC
Q 012529 350 IVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSV 424 (461)
Q Consensus 350 ~i~~~P~~~~pf~~~~~~~~-~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~a~~~G~p 424 (461)
||+|||..++|||++.++++ .++++||||++| +||+|||+|+||+++|++++++.+++++. ++|||+|+++|+|
T Consensus 224 fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~p 302 (335)
T PF00152_consen 224 FITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMP 302 (335)
T ss_dssp EEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--
T ss_pred EEEecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCc
Confidence 99999999999999888776 789999999999 59999999999999999999999988777 8999999999999
Q ss_pred CCccccccHHHHHHHHcCCCCccccccCCCCCC
Q 012529 425 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457 (461)
Q Consensus 425 P~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~ 457 (461)
||||||||+|||+|++||.+|||||++|||+++
T Consensus 303 p~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 303 PHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred ccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 999999999999999999999999999999863
No 32
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-71 Score=544.84 Aligned_cols=409 Identities=23% Similarity=0.349 Sum_probs=312.9
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhh--hhhcCCCCCcEE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASI 86 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~--~~~~~l~~g~~V 86 (461)
++++.|.++... .+|++|.+|||+...|.+|.+.|..|||..|. +|+.++.+.....+ .+. ++.+|+|
T Consensus 33 ~~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv 102 (628)
T KOG2411|consen 33 SRTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVV 102 (628)
T ss_pred hhhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheE
Confidence 456778888764 78999999999999999999999999999975 88888776532222 234 8999999
Q ss_pred EEEeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCccc-------CChhhhhcCccccCCCHHHHHHHHHHH
Q 012529 87 WIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRN 152 (461)
Q Consensus 87 ~v~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~~-------~~~~~~r~~r~l~~R~~~~~~~l~~Rs 152 (461)
.|+|++...+. .++.+|+.++++++++++...+|+...+ .+..+...+|||++|.+.++..+|+||
T Consensus 103 ~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS 182 (628)
T KOG2411|consen 103 QVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRS 182 (628)
T ss_pred eeeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHH
Confidence 99999987632 3568999999999999998878875432 233344489999999999999999999
Q ss_pred HHHHHHHHHhhh-CCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccc------cCcCcceeEEEec
Q 012529 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKD------GLIDWSQVYTFGP 225 (461)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~------~~~~~~rVfeI~~ 225 (461)
+++..+|+||.+ +||+||+||+|-..++|||.+ |.|..... ...+|+|+|++| |..|++|+|||++
T Consensus 183 ~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~E-FvVPtr~~------~g~FYaLpQSPQQfKQlLMvsGidrYyQiAR 255 (628)
T KOG2411|consen 183 NVVKKIRRYLNNRHGFVEVETPTLFKRTPGGARE-FVVPTRTP------RGKFYALPQSPQQFKQLLMVSGIDRYYQIAR 255 (628)
T ss_pred HHHHHHHHHHhhhcCeeeccCcchhccCCCccce-eecccCCC------CCceeecCCCHHHHHHHHHHhchhhHHhHHh
Confidence 999999999976 579999999999999999988 87765433 134677887764 4568999999999
Q ss_pred ccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccc
Q 012529 226 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 305 (461)
Q Consensus 226 ~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~i 305 (461)
|||+|+++.+|+ |||||+|+||+|.+.+|+|+++|+++.+++....+.. +..||++|
T Consensus 256 CfRDEdlR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~~----------------------l~~PF~ri 312 (628)
T KOG2411|consen 256 CFRDEDLRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGIQ----------------------LPVPFPRI 312 (628)
T ss_pred hhcccccCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCCC----------------------CCCCcccc
Confidence 999999999999 9999999999999999999999999999998876521 11233333
Q ss_pred cHHHHHH-------------------------------------------------------------------------
Q 012529 306 SYTDAIE------------------------------------------------------------------------- 312 (461)
Q Consensus 306 t~~ea~~------------------------------------------------------------------------- 312 (461)
||+||++
T Consensus 313 TY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~ 392 (628)
T KOG2411|consen 313 TYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFP 392 (628)
T ss_pred cHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceee
Confidence 3333322
Q ss_pred ------------------------HHHHhccccccc--cccccc-------------CChHhhhchhhhcccCCCeeeee
Q 012529 313 ------------------------LLIKAKKKFEFL--VKWGCD-------------LQSEHERYLTEEAFGGCPVIVSD 353 (461)
Q Consensus 313 ------------------------~l~~~~~~~~~~--~~~g~~-------------l~~~~e~~l~e~~~~~~p~~i~~ 353 (461)
+.+..+..-.+. ..||.. +...+.+-+..+- ...++||+|
T Consensus 393 ~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~-~~~~lWVvD 471 (628)
T KOG2411|consen 393 IEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKS-KFSFLWVVD 471 (628)
T ss_pred eeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhccccccc-cceEEEEEe
Confidence 111111110000 011110 0111111111111 125889999
Q ss_pred CCcc-------------CCccccccCCCc-------c--ceeccccccCCceeeechhhhcccHHHHHHHHHHc-CCCcc
Q 012529 354 YPKE-------------IKAFYMRQNDDG-------R--TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-KLNRD 410 (461)
Q Consensus 354 ~P~~-------------~~pf~~~~~~~~-------~--~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-~~~~~ 410 (461)
||.. ++||.+++.+|- . ....|||++||+ ||+|||.|+|+++.|...++.. +++.+
T Consensus 472 FPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGGGSiRIhn~diQr~vLe~iLk~p~~ 550 (628)
T KOG2411|consen 472 FPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGGGSIRIHNPDIQRYVLEDILKIPED 550 (628)
T ss_pred ccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccE-eecCceeEecCHHHHHHHHHHHhcCchh
Confidence 9985 689998765541 1 235799999998 9999999999999999999854 44444
Q ss_pred cH--HHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCC
Q 012529 411 SY--WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 411 ~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~ 459 (461)
.+ ++.|+|+.+|+|||||||+|+|||+|+|||++||||||+||++..+.
T Consensus 551 ~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~G~ 601 (628)
T KOG2411|consen 551 AESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTTGA 601 (628)
T ss_pred hhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCCcc
Confidence 34 47889999999999999999999999999999999999999987653
No 33
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.7e-68 Score=534.22 Aligned_cols=296 Identities=21% Similarity=0.265 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcce
Q 012529 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (461)
Q Consensus 142 ~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~r 219 (461)
+.++++|++||++++++|+||.++||+||+||+|+++++++++++|.+ .+++. ..+|++||.+.++++.+ ++++|
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~-~~yL~~Spql~~k~ll~--~g~~~ 78 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDM-DLYLRIAPELYLKRLIV--GGFER 78 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCc-ceeeccCHHHHHHHHHh--cCCCc
Confidence 567899999999999999999999999999999999888888899977 34443 46788888766544332 36899
Q ss_pred eEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhc
Q 012529 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299 (461)
Q Consensus 220 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 299 (461)
||+||||||||++ ++||||||||||||++|.|++|+|+++|++|+++++.+.+.+ ++.+.+.. ....
T Consensus 79 vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~--~~~~~~~~----------~~~~ 145 (329)
T cd00775 79 VYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKT--KIEYGGKE----------LDFT 145 (329)
T ss_pred EEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCCcc----------ccCC
Confidence 9999999999999 589999999999999999999999999999999999987643 23222110 0123
Q ss_pred CCCccccHHHHHHHHHHhcc---------------------cccccccccccCChHhhhchhhhcccCCCeeeeeCCccC
Q 012529 300 RDFVQLSYTDAIELLIKAKK---------------------KFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 358 (461)
Q Consensus 300 ~~~~~it~~ea~~~l~~~~~---------------------~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~ 358 (461)
.||+++||.||++.+..... +++....|+..++..+++++.+.+ + +|+||+|||..+
T Consensus 146 ~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~-~-~p~fi~~yP~~~ 223 (329)
T cd00775 146 PPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTL-I-QPTFIIDHPVEI 223 (329)
T ss_pred CCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcccc-C-CCEEEECCChHh
Confidence 58999999999986632111 010111244444555566655544 4 799999999999
Q ss_pred CccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHc------CCCccc--HHHHHHHhccCCCCCcccc
Q 012529 359 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGFG 430 (461)
Q Consensus 359 ~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~a~~~G~pP~gG~g 430 (461)
+|||+..++|+++++|||||++|+ ||+||++|++++++|++++++. +.+++. .+|||+|++||+|||||||
T Consensus 224 ~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~g 302 (329)
T cd00775 224 SPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLG 302 (329)
T ss_pred CcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcEE
Confidence 999986666678899999999998 9999999999999999998653 565543 4899999999999999999
Q ss_pred ccHHHHHHHHcCCCCccccccCCCCC
Q 012529 431 LGFERLVQFATGVENIRDAIPFPRTP 456 (461)
Q Consensus 431 iGidRLvm~l~g~~~Irdv~~FPr~~ 456 (461)
||+|||+|+++|.+|||||++||++.
T Consensus 303 lGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 303 IGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred ecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 99999999999999999999999975
No 34
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=1.5e-67 Score=521.90 Aligned_cols=287 Identities=22% Similarity=0.279 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecC-CCCCCCcceeeeecCC----CcccccCCccccCCCccccCcCcceeEE
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLIP----SSREAAESPVDAIPKTKDGLIDWSQVYT 222 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-~~eg~~~~F~v~~~~~----~~~~~~~s~~~~l~~~~~~~~~~~rVfe 222 (461)
+++||.+++++|+||.++||+||+||+|+++ .+|+++++|.++|++. ...+|++||++.++++.++ +++||||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~--g~~rVfe 78 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAA--GSGPIFQ 78 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhc--cCCCEEE
Confidence 5789999999999999999999999999998 5678899999988763 3567888887766544333 5899999
Q ss_pred EecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCC
Q 012529 223 FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 302 (461)
Q Consensus 223 I~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 302 (461)
||||||||++ ++||||||||||||++|.|++|+|+++|++++++++.+ ..+|...++.+++++..+.++
T Consensus 79 igp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~----------~~~~~~it~~ea~~~~~~~~~ 147 (304)
T TIGR00462 79 ICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDP----------FAPWERLSYQEAFLRYAGIDP 147 (304)
T ss_pred EcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhc----------CCCcEEEEHHHHHHHHhCCCc
Confidence 9999999999 58999999999999999999999999999999998752 123333455556666666666
Q ss_pred ccccHHHHHHHHHHhcccccccccccccCChHhhhchhh---hcc-cCCCeeeeeCCccCCccccccCCCccceeccccc
Q 012529 303 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAF-GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDML 378 (461)
Q Consensus 303 ~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e---~~~-~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~ 378 (461)
...+.+++.+++++.|.. ..++.+++..+|+++.+ +.+ .++|+||+|||..++|||+..+++++.++||||+
T Consensus 148 ~~~~~~~~~~~~~~~g~~----~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~~~~~~~~~~~~rfdl~ 223 (304)
T TIGR00462 148 LTASLDELAAAAAAHGVR----ASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISPDDPRVAERFELY 223 (304)
T ss_pred ccCCHHHHHHHHHHcCCC----CCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCccccCCCCCeeEEEEEE
Confidence 666777777777777654 34667888899988753 333 2479999999999999987555566788999999
Q ss_pred cCCceeeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccc
Q 012529 379 VPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 450 (461)
Q Consensus 379 ~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~ 450 (461)
++|+ ||+||++|++++++|++++++ .|+++..+ +|||+|++||+|||||||||||||+|++||.+|||||+
T Consensus 224 ~~G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi 302 (304)
T TIGR00462 224 IKGL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVL 302 (304)
T ss_pred ECCE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcc
Confidence 9997 999999999999999998865 68888888 68999999999999999999999999999999999999
Q ss_pred cC
Q 012529 451 PF 452 (461)
Q Consensus 451 ~F 452 (461)
+|
T Consensus 303 ~F 304 (304)
T TIGR00462 303 AF 304 (304)
T ss_pred cC
Confidence 98
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=9.8e-67 Score=506.83 Aligned_cols=262 Identities=25% Similarity=0.427 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecC-CCcccccCCccccCCCccccCcCcceeEEEecc
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLI-PSSREAAESPVDAIPKTKDGLIDWSQVYTFGPT 226 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~-~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~ 226 (461)
+++||++++++|+||.++||+||+||+|+++++|+++++|.+.|+. ....+|.+||.+.+..+. .++++|||+|+||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~--~~~~~~vf~i~~~ 78 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLM--VGGLDRVFEINRN 78 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHH--hcCCCcEEEEecc
Confidence 5789999999999999999999999999999999999999998772 224677888765432222 2368999999999
Q ss_pred cccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCcccc
Q 012529 227 FRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 306 (461)
Q Consensus 227 FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it 306 (461)
||+| ..+.||++||||||||++|.|++|+|+++|++|+++++.+.+.+..++... . ..++.||++||
T Consensus 79 fR~e-~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~-----------~-~~~~~~~~rit 145 (269)
T cd00669 79 FRNE-DLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFE-----------L-EDFGLPFPRLT 145 (269)
T ss_pred eeCC-CCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccc-----------c-cccCCCceEee
Confidence 9999 558999999999999999999999999999999999999987765544211 0 12346899999
Q ss_pred HHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceee
Q 012529 307 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGEL 385 (461)
Q Consensus 307 ~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei 385 (461)
|.||++++. +|+||+|||...+|||++.++ ++++++||||+++|+ ||
T Consensus 146 ~~ea~~~~~-------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~-Ei 193 (269)
T cd00669 146 YREALERYG-------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGV-EV 193 (269)
T ss_pred HHHHHHHhC-------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCE-EE
Confidence 999987632 499999999999999987765 457899999999996 99
Q ss_pred echhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCC
Q 012529 386 IGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456 (461)
Q Consensus 386 ~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~ 456 (461)
+||++|+|+++.|.+++++++++++ .++|||+|++||+|||||||||+|||+|++||.+|||||++|||++
T Consensus 194 ~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 194 GNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred eeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 9999999999999999999999988 8999999999999999999999999999999999999999999986
No 36
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=4.7e-62 Score=476.63 Aligned_cols=270 Identities=28% Similarity=0.453 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecC--CCcccccCCccccCCCccccCcCcceeEEEec
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLI--PSSREAAESPVDAIPKTKDGLIDWSQVYTFGP 225 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~--~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~ 225 (461)
+++||++++++|+||.++||+||+||+|++++++|++. |.+.+.. ....+|++||++.++.+.++ +++|||+|||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~--g~~~v~~i~~ 77 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLFKQLLMVS--GFDRYFQIAR 77 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccccCCCceeecccCHHHHHHHHHhc--CcCcEEEecc
Confidence 57899999999999999999999999999999988765 8776653 22334788876655433333 5899999999
Q ss_pred ccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccc
Q 012529 226 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 305 (461)
Q Consensus 226 ~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~i 305 (461)
|||+|++++.|| +||||||||++|.|++|+|+++|++|+++++.+.+. ..+.||+++
T Consensus 78 ~fR~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~----------------------~~~~p~~ri 134 (280)
T cd00777 78 CFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV----------------------ELTTPFPRM 134 (280)
T ss_pred ceeCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCCcee
Confidence 999999987777 599999999999999999999999999999887642 123589999
Q ss_pred cHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeee-CCccCC---ccccccCCCccceeccccccCC
Q 012529 306 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YPKEIK---AFYMRQNDDGRTVAAMDMLVPR 381 (461)
Q Consensus 306 t~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~-~P~~~~---pf~~~~~~~~~~~~~fdl~~~G 381 (461)
||.||++.+ +. .+.|+.|+.. .+..+. .++++++++ ||.... |++ +.++++++++||||+++|
T Consensus 135 ty~eA~~~~---~~----~~~~~~d~~~-~~~~~~----~~~~~~~~~pf~~~~~~~~~~~-~~~~~~~~~~~fdl~~~G 201 (280)
T cd00777 135 TYAEAMERY---GF----KFLWIVDFPL-FEWDEE----EGRLVSAHHPFTAPKEEDLDLL-EKDPEDARAQAYDLVLNG 201 (280)
T ss_pred eHHHHHHHh---CC----CCccccCCcc-cCChhH----HHHHHHHhCCCcCCCcccchhh-hcCCccCeeEEEEEEeCC
Confidence 999999864 22 2346655431 010000 113344444 443322 232 223333689999999999
Q ss_pred ceeeechhhhcccHHHHHHHHHHcCCC----cccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCC
Q 012529 382 IGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457 (461)
Q Consensus 382 ~~Ei~~g~~r~~~~~~~~~~~~~~~~~----~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~ 457 (461)
+ ||+||++|+|+++.|++++++.|++ ++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+.+
T Consensus 202 ~-Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 202 V-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred E-EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 7 9999999999999999999999998 4568999999999999999999999999999999999999999999864
No 37
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=1.9e-61 Score=478.87 Aligned_cols=287 Identities=18% Similarity=0.168 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCC-CCCcceeeeecCC-----CcccccCCccccCCCccccCcCcc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIP-----SSREAAESPVDAIPKTKDGLIDWS 218 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~~~F~v~~~~~-----~~~~~~~s~~~~l~~~~~~~~~~~ 218 (461)
..+|++|+++++++|+||.++||+||+||+|+..+.. ....+|.+.|+.. ...+|.+||...++++.+ .+++
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la--~~~~ 79 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLA--AGSG 79 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhh--cccc
Confidence 4689999999999999999999999999999976653 4457888877621 235677887766554333 2488
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhh
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 298 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 298 (461)
|||+||||||||++ +.||++||||||||++|.|++|+|+++|+||++++.. .+|...+..+.++++.
T Consensus 80 rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------------~~~~~i~~~eaf~~~~ 146 (306)
T PRK09350 80 PIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------EPAESLSYQQAFLRYL 146 (306)
T ss_pred ceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------------CCceEEEHHHHHHHHh
Confidence 99999999999999 8999999999999999999999999999999998752 1122223344455555
Q ss_pred cCCCccccHHHHHHHHHHhcccccccccccccCChHhhhch---hhhc-ccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 299 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL---TEEA-FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 299 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l---~e~~-~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
+.+....++.++.+++.+.|.. .....+.++....++.+ +++. ..+.|+||+|||.+++|||++.++++++++|
T Consensus 147 g~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~a~~~~~~~~~~~r 224 (306)
T PRK09350 147 GIDPLSADKTQLREVAAKLGLS--NIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAKISTEDHRVAER 224 (306)
T ss_pred CCCCCcCCHHHHHHHHHHcCCC--CcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCccccccCCCCCeeEE
Confidence 5555555666666666655541 00112223333333322 3433 3236999999999999998765566678999
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCc
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~I 446 (461)
||||++|+ ||+||++|++|+++|++++++ .|.++.++ +|||+|++||+|||||||||||||+|++||++||
T Consensus 225 fdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~I 303 (306)
T PRK09350 225 FEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESI 303 (306)
T ss_pred EEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCc
Confidence 99999997 999999999999999999864 67888888 5699999999999999999999999999999999
Q ss_pred ccc
Q 012529 447 RDA 449 (461)
Q Consensus 447 rdv 449 (461)
|||
T Consensus 304 rdv 306 (306)
T PRK09350 304 SEV 306 (306)
T ss_pred ccC
Confidence 997
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-52 Score=388.47 Aligned_cols=290 Identities=21% Similarity=0.224 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCCcceeeeecCCC-----cccccCCccccCCCccccCcCcc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPS-----SREAAESPVDAIPKTKDGLIDWS 218 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~~F~v~~~~~~-----~~~~~~s~~~~l~~~~~~~~~~~ 218 (461)
.+.+..|+.|+++||.||.++||+||+||.|+.++. +..-.+|.+.+.+.. ..|+.+||++.++++.+. |-.
T Consensus 13 ~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAa--g~~ 90 (322)
T COG2269 13 IDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAA--GSG 90 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHc--cCC
Confidence 445899999999999999999999999999998876 456688998877542 246789999988876543 468
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhh
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 298 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 298 (461)
++||||+|||||+. +++|+|||||||||..+.||..+|+.+.+|++.++.... .+.+ +..+.+....
T Consensus 91 ~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~---~E~l---------s~~eaF~r~~ 157 (322)
T COG2269 91 PIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVE---AERL---------SYQEAFLRYL 157 (322)
T ss_pred cchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCC---ccee---------eHHHHHHHHh
Confidence 99999999999985 899999999999999999999999999999998876421 0111 1122222333
Q ss_pred cCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchh---h-hcccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 299 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---E-EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 299 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~---e-~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
+.+.....-++..+.+++.|+... -.++.++.+.+.++ | +++.++|+||+|||..+++++...+.|+..++|
T Consensus 158 gid~l~~~~~~L~~~~~~~~l~~~----~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~~~D~rVAER 233 (322)
T COG2269 158 GIDPLSADKTELREAAAKLGLSAA----TDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALAQISTGDPRVAER 233 (322)
T ss_pred CCCcccccHHHHHHHHHhcCCCCC----CccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHhhccCCCCcchhhh
Confidence 333222112222222333333311 12234455555443 2 345568999999999999999877778888899
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCc
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~I 446 (461)
||||+.|+ ||+||+-+.+|+++|+++++. .+...-++ +.||.|+.. ||||+|+++|+|||+|+++|.++|
T Consensus 234 FElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i 311 (322)
T COG2269 234 FELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESI 311 (322)
T ss_pred hhheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHHHHHHHHcCcchH
Confidence 99999999 999999999999999999853 23332333 779999998 999999999999999999999999
Q ss_pred cccccCCCC
Q 012529 447 RDAIPFPRT 455 (461)
Q Consensus 447 rdv~~FPr~ 455 (461)
.||+.||..
T Consensus 312 ~~Vi~f~v~ 320 (322)
T COG2269 312 DDVIAFPVA 320 (322)
T ss_pred HHHhhcccc
Confidence 999999975
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.87 E-value=1.2e-21 Score=171.83 Aligned_cols=122 Identities=18% Similarity=0.354 Sum_probs=100.6
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhhhhhcCCCCCcEEEEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~v~ 89 (461)
++.++++... ..|++|+|+|||+++|.+|+++|++|+|++|. +|||++.+..+ +..++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g~--~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYGI--VQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCee--EEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 4667777653 57899999999999999999999999999964 99999865433 556677 9999999999
Q ss_pred eeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCccc---CChhhhhcCccccCCCHH
Q 012529 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (461)
Q Consensus 90 G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~~---~~~~~~r~~r~l~~R~~~ 143 (461)
|++.+++. ..+++||.++++++|++| .++|+..++ .+.++..+||||++|++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99987643 345799999999999999 578887654 356677799999999863
No 40
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.84 E-value=2.2e-20 Score=156.10 Aligned_cols=101 Identities=27% Similarity=0.490 Sum_probs=89.3
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCC--CcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~--~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
+|+|+|||+++|.+|+++|++|||++|. +|||++.+ ...|+.++. |+.||+|.|+|++.+++...+++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCee--EEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 3899999999999999999999999975 99999865 234566777 99999999999999988877889999999
Q ss_pred EEEeccCCCCCCCCcccCChhhhhcCccc
Q 012529 109 IVLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (461)
Q Consensus 109 i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l 137 (461)
++++|+|. ++|++++. +.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 99999996 69998764 88999999996
No 41
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.81 E-value=1.8e-19 Score=151.93 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=87.6
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEEEEE
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~v~ 89 (461)
++.++.+. ..|++|+|+|||+++|.+|+++|++|||++|. +|||++.+. ..|+.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITPE------LDGEEVTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCchh------hCCCEEEEEEEEEeeeccCCeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 45666643 57899999999999999999999999999974 999998653 23666777 9999999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcc
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK 124 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~ 124 (461)
|++.+++...+++||+++++++||+|+.++|++.+
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 99999988777899999999999999877998654
No 42
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.79 E-value=9.4e-19 Score=147.54 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=82.6
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
+|+|+|||+++|.+|+++|++|+|+++ .+|||++.+. ..|..+. ..|+.||+|.|+|++.+++.+ ++||.++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~-~~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFK-KLLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHH-hcCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 388999999999999999999999995 5999998664 2344432 129999999999999998874 7999999
Q ss_pred EEEEeccCCCCCCCCccc-CChhhhhcCccccC
Q 012529 108 KIVLVGKSDPSYPIQKKR-VSREFLRTKAHLRP 139 (461)
Q Consensus 108 ~i~vl~~~~~~~Pl~~~~-~~~~~~r~~r~l~~ 139 (461)
+++|||+|..++|..... .+.++.+++||||+
T Consensus 76 ~~~ils~~~~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccCCCCCCCccCcCChhheeecccccC
Confidence 999999997444443322 24566668999875
No 43
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.74 E-value=3.4e-17 Score=131.03 Aligned_cols=81 Identities=41% Similarity=0.808 Sum_probs=73.3
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEE
Q 012529 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (461)
Q Consensus 32 v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~v 111 (461)
|+|+|||+++|.+|+++|++|||+++.+++|||++++...|+.++. |+.||+|.|+|.+.+++.+++++||+++++++
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~i 79 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIEV 79 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEEE
Confidence 8999999999999999999999999876899999877655666777 99999999999999998877899999999999
Q ss_pred ecc
Q 012529 112 VGK 114 (461)
Q Consensus 112 l~~ 114 (461)
++.
T Consensus 80 l~~ 82 (82)
T cd04318 80 LGE 82 (82)
T ss_pred ecC
Confidence 873
No 44
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.74 E-value=2.5e-17 Score=137.41 Aligned_cols=90 Identities=24% Similarity=0.378 Sum_probs=75.7
Q ss_pred EEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCCc-----chhhhhhcCCCCCcEEEEEeeEeecCCC-----C
Q 012529 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~~-----~~~~~~~~~l~~g~~V~v~G~~~~~~~~-----~ 99 (461)
+|+|+|||+++|.+| +++|++|||++|. +|||++.+.. .+..++. |+.||+|.|+|++.+++.. +
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~--iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYT--IQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCce--EEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 9999999999964 9999986531 2344567 9999999999999987653 2
Q ss_pred ccEEEEEeEEEEeccCCCCCCCCcc
Q 012529 100 QKVELKVNKIVLVGKSDPSYPIQKK 124 (461)
Q Consensus 100 ~~~el~~~~i~vl~~~~~~~Pl~~~ 124 (461)
+++||+++++++|++|..++|++.+
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~~ 101 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQLE 101 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCCC
Confidence 6899999999999999767888643
No 45
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.72 E-value=7.6e-17 Score=153.65 Aligned_cols=267 Identities=19% Similarity=0.182 Sum_probs=162.2
Q ss_pred HHHHHHHHhh-----hCCcEEEecceeecCCCC------CCCcc--eeeeecCCCcccccCCccccCCCccccCcCc---
Q 012529 154 LAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQ--FCVTTLIPSSREAAESPVDAIPKTKDGLIDW--- 217 (461)
Q Consensus 154 i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~--F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~--- 217 (461)
.|..+++||. +.+.+.|..|+++....+ |.-+| |.+...+........|...| ++......+|
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKW-KR~aL~~y~f~~g 81 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKW-KRLALARYGFSLG 81 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHH-HHHHHHhcCCCCC
Confidence 3556666664 479999999999986654 22333 22222211111122333222 1100000112
Q ss_pred ceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhh
Q 012529 218 SQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 296 (461)
Q Consensus 218 ~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (461)
+-+|+=..+.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+. .+..
T Consensus 82 eGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y~---------~~~~ 151 (309)
T cd00645 82 EGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKYP---------QLEP 151 (309)
T ss_pred ceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHch---------hhhh
Confidence 448888888885 665 68999889999999887666666777777777777666543211000010 1111
Q ss_pred hhcCCCccccHHHHHHHHHHhcccccccccccccC-ChHhhhchhhhcccCCCeeeeeCCccCC---ccccccCCCccce
Q 012529 297 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL-QSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDDGRTV 372 (461)
Q Consensus 297 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l-~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~~~~~~~ 372 (461)
.+.. .|++-.+.++.... . +| ..+.|..+++++ ..|||+.--..++ |--.+..+.+.+.
T Consensus 152 ~Lp~---~i~FitsqeL~~~Y----------P-~l~~keRE~~i~ke~---gaVFi~~IG~~L~~g~~Hd~RapDYDDW~ 214 (309)
T cd00645 152 ILPE---EITFITSQELEDRY----------P-DLTPKEREDAICKEH---GAVFIIGIGGKLSDGKKHDGRAPDYDDWT 214 (309)
T ss_pred cCCC---ceEEecHHHHHHHC----------C-CCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCCcCcc
Confidence 2222 33433333333221 1 12 235676677655 4688887554432 2222222223344
Q ss_pred ecccccc------CCceeeechhhhcccHHHHHHHHHHcC-CCcccHHHHHHHhccC-CCCCccccccHHHHHHHHcCCC
Q 012529 373 AAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVE 444 (461)
Q Consensus 373 ~~fdl~~------~G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~a~~~G-~pP~gG~giGidRLvm~l~g~~ 444 (461)
..=|+++ ..+ ||.+|++|.++ +.+.++++..| .+...+.| ++++..| +|||+|+|||+|||+|+|+|..
T Consensus 215 LNGDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~ 291 (309)
T cd00645 215 LNGDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKA 291 (309)
T ss_pred ccceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccc
Confidence 3334443 256 99999999999 99999999988 56677776 9998888 8999999999999999999999
Q ss_pred Ccccccc
Q 012529 445 NIRDAIP 451 (461)
Q Consensus 445 ~Irdv~~ 451 (461)
+|.+|.+
T Consensus 292 HIgEVqa 298 (309)
T cd00645 292 HIGEVQA 298 (309)
T ss_pred hhcceee
Confidence 9999986
No 46
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.71 E-value=7.4e-17 Score=130.21 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=71.4
Q ss_pred EEEEEEEEeeeec-CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCC----ccEEEE
Q 012529 31 MIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELK 105 (461)
Q Consensus 31 ~v~v~G~v~~~R~-~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~----~~~el~ 105 (461)
+|+|+|||+++|. +|+++|++|||++| ..+||+++++...|+.++. |+.||+|.|+|++.+++.+. +++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 69999999999998 4699999876556777777 99999999999999988654 789999
Q ss_pred EeEEEEecc
Q 012529 106 VNKIVLVGK 114 (461)
Q Consensus 106 ~~~i~vl~~ 114 (461)
++++++|++
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999984
No 47
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.70 E-value=3.9e-16 Score=150.42 Aligned_cols=274 Identities=17% Similarity=0.135 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHhhh-----CCcEEEecceeecCCCCC------CCcc--eeeeecCCCcccccCCcccc----CCC
Q 012529 147 VARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEG------AGEQ--FCVTTLIPSSREAAESPVDA----IPK 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~eg------~~~~--F~v~~~~~~~~~~~~s~~~~----l~~ 209 (461)
.++.....|..+++||.. .+.+.|..|+++....+- .-+| |.+...+........|...| |++
T Consensus 7 ~~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~ 86 (348)
T PTZ00213 7 AYIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGE 86 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHh
Confidence 455556677778888754 699999999999865531 1122 22222211111222333222 111
Q ss_pred ccccCcCcceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccc
Q 012529 210 TKDGLIDWSQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEK 288 (461)
Q Consensus 210 ~~~~~~~~~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 288 (461)
+.- ..-+-+|+=.++.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+.
T Consensus 87 y~f--~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~yp----- 158 (348)
T PTZ00213 87 HKF--PVGEGIYTDMNALRVEEEL-DNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRKTEEAICNEYP----- 158 (348)
T ss_pred cCC--CCCceeeeccccccCCccc-CccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHch-----
Confidence 110 012448997888885 555 68999889999999987766666677777777776665533210000010
Q ss_pred hhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccC-ChHhhhchhhhcccCCCeeeeeCCccCC---ccccc
Q 012529 289 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL-QSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMR 364 (461)
Q Consensus 289 ~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l-~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~ 364 (461)
.+...+.. .|++-.+.++++.. . +| ..+.|..++.++ ..|||+.--..++ |--.+
T Consensus 159 ----~l~~~Lp~---~I~FitsqeL~~~Y----------P-~lt~keRE~~i~ke~---gaVFi~~IG~~L~~G~~Hd~R 217 (348)
T PTZ00213 159 ----NLKRILPK---EITFLHTEHLLKMY----------P-NLSPKEREREIVKKY---GAVFLIGIGCKLSSGDTHDLR 217 (348)
T ss_pred ----hhhhcCCC---ceEEecHHHHHHHC----------C-CCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCC
Confidence 01111111 22222222222210 0 11 122333333332 2344443222111 11001
Q ss_pred cCCCccce-------------------------ecccccc-----CCceeeechhhhcccHHHHHHHHHHcC-CCcccHH
Q 012529 365 QNDDGRTV-------------------------AAMDMLV-----PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYW 413 (461)
Q Consensus 365 ~~~~~~~~-------------------------~~fdl~~-----~G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~ 413 (461)
..+.+.+. ..=|+++ .--.||.+|++|+ +++.+.++++..| .+...+.
T Consensus 218 ApDYDDW~t~~~~~~~~~~~~~~~~~~~~~~~gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~ 296 (348)
T PTZ00213 218 APDYDDWSSPVSASKIGFPTADPTMNSLMSLQGLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCM 296 (348)
T ss_pred CCCcccccccccccccccccccccccccccccCccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCH
Confidence 00000010 1123322 2225999999999 9999999999998 5778899
Q ss_pred HHHHHhccC-CCCCccccccHHHHHHHHcCCCCcccccc
Q 012529 414 WYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 414 ~yl~a~~~G-~pP~gG~giGidRLvm~l~g~~~Irdv~~ 451 (461)
||++ +..| +|+|+|+|||+|||+|+|+|..+|.+|.+
T Consensus 297 ~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 297 WHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred HHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 9999 5556 89999999999999999999999999976
No 48
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.70 E-value=4.9e-16 Score=149.49 Aligned_cols=269 Identities=17% Similarity=0.123 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhh-----hCCcEEEecceeecCCCCCC------Ccc--eeeeecCCCcccccCCcccc----CCCcccc
Q 012529 151 RNALAYATHKFFQ-----ENGFIWISSPIITASDCEGA------GEQ--FCVTTLIPSSREAAESPVDA----IPKTKDG 213 (461)
Q Consensus 151 Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~eg~------~~~--F~v~~~~~~~~~~~~s~~~~----l~~~~~~ 213 (461)
....|+.++++|. +.+.+.|..|+++....+-+ -+| |.+...+........|...| |+++.-
T Consensus 11 tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f- 89 (327)
T PRK05425 11 TQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGF- 89 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCC-
Confidence 3455566666664 47999999999998655421 222 22222211111122333222 111100
Q ss_pred CcCcceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhh
Q 012529 214 LIDWSQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 292 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (461)
..-+-+|+=..+.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+.
T Consensus 90 -~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te~~~~~~y~--------- 158 (327)
T PRK05425 90 -SAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATEKAVSKKYP--------- 158 (327)
T ss_pred -CCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCc---------
Confidence 012348888888885 565 68999889999999987656666777777777777766543211000010
Q ss_pred hhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCC---ccccccCCCc
Q 012529 293 RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDDG 369 (461)
Q Consensus 293 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~~~~ 369 (461)
.+ +.+.. .|++-.+.++.+. +...-..+.|..++..+ ..|||+.--..++ |--.+..+.+
T Consensus 159 ~~-~~Lp~---~i~FitsqeL~~~----------YP~l~~keRE~~i~ke~---gaVFi~~IG~~L~~g~~Hd~RapDYD 221 (327)
T PRK05425 159 LL-PFLPE---EITFITSQELEDR----------YPDLTPKEREDAIAKEY---GAVFLIGIGGKLSDGKPHDGRAPDYD 221 (327)
T ss_pred cc-ccCCC---ceEEecHHHHHHH----------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCCc
Confidence 00 11111 2333333333222 11111245666677655 4688887554432 2222222323
Q ss_pred cceeccccccC------CceeeechhhhcccHHHHHHHHHHcC-CCcccHHHHHHHhccC-CCCCccccccHHHHHHHHc
Q 012529 370 RTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 370 ~~~~~fdl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~a~~~G-~pP~gG~giGidRLvm~l~ 441 (461)
.+...=|+++- .+ ||.+|++|++ ++.+.++++..| .+...+.||+++ ..| +|||+|+|||+|||+|+|+
T Consensus 222 DW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL 298 (327)
T PRK05425 222 DWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLLL 298 (327)
T ss_pred CcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHHh
Confidence 34433344432 56 9999999998 999999999998 577888999999 667 8999999999999999999
Q ss_pred CCCCcccccc
Q 012529 442 GVENIRDAIP 451 (461)
Q Consensus 442 g~~~Irdv~~ 451 (461)
|.++|.+|.+
T Consensus 299 ~k~HIgEVq~ 308 (327)
T PRK05425 299 QKAHIGEVQA 308 (327)
T ss_pred ccchhccccc
Confidence 9999999986
No 49
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.69 E-value=2.1e-16 Score=127.04 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=71.0
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhhhhhcCCCCCcEEEEEeeEeecCCC---CccEEEEE
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKV 106 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~v~G~~~~~~~~---~~~~el~~ 106 (461)
+|+|+|||+++|.+|+++|++|||+++. +|++++.+... ++.++. |+.||+|.|+|++.+++.+ .+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 3899999999999999999999999975 99999865433 666777 9999999999999999877 78899999
Q ss_pred eEEEEecc
Q 012529 107 NKIVLVGK 114 (461)
Q Consensus 107 ~~i~vl~~ 114 (461)
+++++||+
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999984
No 50
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.67 E-value=6e-16 Score=124.66 Aligned_cols=80 Identities=25% Similarity=0.548 Sum_probs=70.0
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc--hhhhhhcCCCCCcEEEEEeeEeecCC---CCccEEEE
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELK 105 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~v~G~~~~~~~---~~~~~el~ 105 (461)
.|+|+|||+++|.+|+++|++|||+++ .+|++++.+..+ ++.++. |+.||+|.|+|++.+++. .++++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999999999999996 499999876533 555667 999999999999999885 56789999
Q ss_pred EeEEEEecc
Q 012529 106 VNKIVLVGK 114 (461)
Q Consensus 106 ~~~i~vl~~ 114 (461)
++++++|++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
No 51
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.64 E-value=6.3e-15 Score=141.50 Aligned_cols=274 Identities=18% Similarity=0.176 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHhhh-----CCcEEEecceeecCCCC------CCCcc--eeeeecCCCcccccCCccccCCCcccc
Q 012529 147 VARVRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQ--FCVTTLIPSSREAAESPVDAIPKTKDG 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~--F~v~~~~~~~~~~~~s~~~~l~~~~~~ 213 (461)
.++.....|..+++||.. .+.++|..|+++....+ |.-+| |.+...+........|...| ++....
T Consensus 4 ~~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKW-KR~aL~ 82 (330)
T TIGR00669 4 AFILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKW-KRHTLA 82 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHH-HHHHHH
Confidence 355556677778888754 69999999999986554 11233 22221111111222333222 110000
Q ss_pred CcCc---ceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccch
Q 012529 214 LIDW---SQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 289 (461)
Q Consensus 214 ~~~~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 289 (461)
..+| +-+|+=.++-|. |++-+..|.----|.|||.....-+.-++.+.+.++.+++.+..... .+. ..+
T Consensus 83 ~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~te~-~~~--~~y---- 155 (330)
T TIGR00669 83 RHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRATEA-AVS--ERF---- 155 (330)
T ss_pred hcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHHHHH-HHH--Hhc----
Confidence 0112 348988888885 66236899988999999988765666667777777777666654321 110 000
Q ss_pred hhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccC-ChHhhhchhhhcccCCCeeeeeCCccCC---cccccc
Q 012529 290 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL-QSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQ 365 (461)
Q Consensus 290 ~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l-~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~ 365 (461)
.+...+.. .|++-.+.+++... . ++ ..+.|..+++++ ..|||+.--..++ |--.+.
T Consensus 156 ---~l~~~Lp~---~I~FitsqeL~~~Y----------P-~lt~keRE~~i~ke~---gaVFi~~IG~~L~~G~~Hd~RA 215 (330)
T TIGR00669 156 ---GLAPFLPD---QIHFVHSEELVSRY----------P-DLDSKGRERAICKEL---GAVFLIGIGGKLSDGKPHDVRA 215 (330)
T ss_pred ---CccccCCC---ceEEecHHHHHHHC----------C-CCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCC
Confidence 01111211 34443333333321 1 12 235566676655 3678776544332 221121
Q ss_pred CCCccce---------ecccccc------CCceeeechhhhcccHHHHHHHHHHcC-CCcccHHHHHHHhccC-CCCCcc
Q 012529 366 NDDGRTV---------AAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAG 428 (461)
Q Consensus 366 ~~~~~~~---------~~fdl~~------~G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~a~~~G-~pP~gG 428 (461)
.+.+.+. ..=|+++ ..+ ||.+.+.|. |.+.+.++++..| .+...+.||+++ ..| +|||+|
T Consensus 216 pDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiG 292 (330)
T TIGR00669 216 PDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIG 292 (330)
T ss_pred CCcccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCcccc
Confidence 2212222 2234433 256 999999999 7888888999988 677889999999 667 899999
Q ss_pred ccccHHHHHHHHcCCCCcccccc
Q 012529 429 FGLGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 429 ~giGidRLvm~l~g~~~Irdv~~ 451 (461)
+|||+|||+|+|+|..+|.+|.+
T Consensus 293 GGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 293 GGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred ccccHHHHHHHHhccccccceee
Confidence 99999999999999999999976
No 52
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.44 E-value=1.8e-13 Score=139.13 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=70.0
Q ss_pred CCHHHHHHHHH-----HHHHHHHHHHHhhhCCcEEEecceeecCCC------CCCC----cceeeeecCCCcccccCCcc
Q 012529 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDC------EGAG----EQFCVTTLIPSSREAAESPV 204 (461)
Q Consensus 140 R~~~~~~~l~~-----Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~----~~F~v~~~~~~~~~~~~s~~ 204 (461)
|.+..++++.+ .+.+.+++|++|...||.||.||+|+.... .++. ..|.+ .. ...+..+..
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i---de-el~LRpsLt 265 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV---DK-NFCLRPMLA 265 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee---CC-ceEehhhhH
Confidence 77889999999 999999999999999999999999975321 1111 11211 11 111111100
Q ss_pred ccCCCcccc-C--cC-cceeEEEecccccCCCCCCCCccccccceeeeccC
Q 012529 205 DAIPKTKDG-L--ID-WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 205 ~~l~~~~~~-~--~~-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 251 (461)
..+...... . .. --|+|+||+|||+|.. +.+|++||+|++++....
T Consensus 266 PsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs 315 (417)
T PRK09537 266 PGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGS 315 (417)
T ss_pred HHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCC
Confidence 001000000 0 01 1379999999999986 688999999999998754
No 53
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.33 E-value=2.5e-12 Score=130.42 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEecceeecCC----------CCCCCcceeeeecCCCcccccCCccccCCCcccc-C--c
Q 012529 149 RVRNALAYATHKFFQENGFIWISSPIITASD----------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG-L--I 215 (461)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----------~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~-~--~ 215 (461)
.-.+.+...+|++|...||.||.||+|+... .+...+.|.+. . ...+..+....|...... . .
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e---e-~lvLRPdLTPsLaR~La~N~~~l 315 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---K-NFCLRPMLAPNLYNYLRKLDRAL 315 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec---C-ceEecccCHHHHHHHHHHhhhhc
Confidence 3457899999999999999999999997311 11112333321 1 011111110011100000 0 0
Q ss_pred C-cceeEEEecccccCCCCCCCCccccccceeeeccCC--HHHHH
Q 012529 216 D-WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDM 257 (461)
Q Consensus 216 ~-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d--~~dlm 257 (461)
. --|+|+||+|||+|.. +.+|+.||+|++++.+..+ +.|+.
T Consensus 316 ~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDle 359 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLE 359 (453)
T ss_pred cCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHH
Confidence 1 2389999999999987 6899999999999987653 54443
No 54
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=7.8e-12 Score=123.28 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC----CcccccCCccccCCCc---c-c---cCcC---c
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP----SSREAAESPVDAIPKT---K-D---GLID---W 217 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~----~~~~~~~s~~~~l~~~---~-~---~~~~---~ 217 (461)
..++..++++|.+.||.+++.|.+.+.--.= -.+|.-.++.. ++.++..+....+.++ + | +... =
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NF-DaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P 192 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETDFYNF-DALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIP 192 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCcccccccch-hhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCC
Confidence 4788899999999999999999666522110 00010000000 0011111100001000 0 0 0000 2
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 267 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~i 267 (461)
-|+|++|+|||+|.. +.+|+|||+|+|-=... .++.+|+..++++++.+
T Consensus 193 ~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~ 243 (335)
T COG0016 193 IKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKF 243 (335)
T ss_pred ceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHh
Confidence 379999999999988 58999999999953332 35667666666665544
No 55
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.30 E-value=4.9e-12 Score=121.63 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecC---------CCC-CC---CcceeeeecCC--Cccc-c--cCCcc--ccCCCcc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITAS---------DCE-GA---GEQFCVTTLIP--SSRE-A--AESPV--DAIPKTK 211 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~---------~~e-g~---~~~F~v~~~~~--~~~~-~--~~s~~--~~l~~~~ 211 (461)
+.+.+.+|++|...||.|+.+|.+.+. +.. .+ .+.|-+..... .... + ++++. ..|.
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~--- 96 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLN--- 96 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHH---
Confidence 478889999999999999999999651 111 11 12232210000 0000 0 01110 0000
Q ss_pred ccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHHH
Q 012529 212 DGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVV 268 (461)
Q Consensus 212 ~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i~ 268 (461)
.....=-|+|+||+|||+|.. +.+|+|||+|+|.-.... ++.+++..++.++++++
T Consensus 97 ~~~~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 97 KHRPPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp TTSHSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred HhcCCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 000012479999999999988 589999999999876655 57777777666666553
No 56
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.27 E-value=2.8e-12 Score=120.07 Aligned_cols=101 Identities=22% Similarity=0.239 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCC---c-ceeeeecCCCcccccCCccccCCCcccc--CcCcceeEEE
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDC-EGAG---E-QFCVTTLIPSSREAAESPVDAIPKTKDG--LIDWSQVYTF 223 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~---~-~F~v~~~~~~~~~~~~s~~~~l~~~~~~--~~~~~rVfeI 223 (461)
|+.+.+.+|++|.+.||.||.||.++.... +..+ + ...+.........+..+....+...... ...--|+|||
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfei 81 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEI 81 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEE
Confidence 678999999999999999999999987522 2111 1 1111111111112222222111110000 0123489999
Q ss_pred ecccccCCCCCC--CCccccccceeeeccCC
Q 012529 224 GPTFRAENSNTS--RHLAEFWMIEPELAFAD 252 (461)
Q Consensus 224 ~~~FR~E~~~t~--rHl~EFtmlE~e~a~~d 252 (461)
|+|||+|.. +. +|+.||+|+++++...+
T Consensus 82 g~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 82 GPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred cceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 999999976 33 78899999999998754
No 57
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.26 E-value=1.7e-11 Score=121.66 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCC---------CC-CCC---cceeeeecCCCcccccCCccccCCCccccCcCcc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASD---------CE-GAG---EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~---------~e-g~~---~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 218 (461)
+.++..||++|...||.|+.+|.|++.. .. .+. +.|.++...- --.+++|.. +..+.... .=-
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~l--LRThTSp~q-ir~L~~~~-~Pi 186 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLL--LRTHTSPVQ-IRTMEKQK-PPI 186 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCce--eeccCcHHH-HHHHHhcC-CCe
Confidence 4788899999999999999999997621 11 111 2333311000 001122210 00000000 012
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVV 268 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~i~ 268 (461)
|+|++|+|||++.. +.+|.|+|+|+|.=... .++.++...++.++++++
T Consensus 187 rif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 187 RIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred EEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 79999999999977 58999999999976555 368888877777777665
No 58
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.12 E-value=1.4e-10 Score=119.78 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=35.9
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQ 265 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~ 265 (461)
|+|.||+|||+|.. +.+|+|||+|+|.-... .++.+++.+++++++
T Consensus 344 k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~ 391 (492)
T PLN02853 344 RYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFS 391 (492)
T ss_pred EEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 79999999999998 58999999999965543 356776665555543
No 59
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.06 E-value=7.5e-10 Score=114.98 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.2
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
-|+|+||+|||+|.. +.+|+|||+|+|..+...+
T Consensus 358 ~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~~ 391 (494)
T PTZ00326 358 KKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDRN 391 (494)
T ss_pred ceEEecCCEecCCCC-CCCcCceeEEEEEEEEeCC
Confidence 389999999999998 5899999999999887654
No 60
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=99.01 E-value=9.1e-09 Score=95.92 Aligned_cols=274 Identities=18% Similarity=0.169 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHhh-----hCCcEEEecceeecCCCC------CCCcceeeee--cCCCcccccCCccccCCCcc--c
Q 012529 148 ARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTT--LIPSSREAAESPVDAIPKTK--D 212 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~F~v~~--~~~~~~~~~~s~~~~l~~~~--~ 212 (461)
+..+.+-|+.+.++|. +.|.+||..|+|+....+ |..++..|.. ......+...|...| ++.. .
T Consensus 5 fI~qQ~~IsfvKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKW-KR~tL~r 83 (330)
T COG2502 5 FILQQQAISFVKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKW-KRHTLAR 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHH-HHHHHHh
Confidence 3334455555555553 479999999999985432 2222322221 111111111222222 1100 0
Q ss_pred -cCcCcceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchh
Q 012529 213 -GLIDWSQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 290 (461)
Q Consensus 213 -~~~~~~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~ 290 (461)
+-..-+-+|.=.++-|. |++-+..|.---.|.|||....+-+.-++.+.+.++.+...+.... +.....+
T Consensus 84 ~~f~~~eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~te---~av~~~~----- 155 (330)
T COG2502 84 YGFSAGEGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRETE---LAVSAEF----- 155 (330)
T ss_pred cCCcCCCceeeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHHH---HHHHHhc-----
Confidence 10112458999999994 7766789988888999998877766667777777777776665331 1000000
Q ss_pred hhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCC-hHhhhchhhhcccCCCeeeeeCCccCC---ccccccC
Q 012529 291 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQN 366 (461)
Q Consensus 291 ~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~ 366 (461)
.+..++. ..|||-.+-++.... + +|+ ...|..++..+ ..||++..--.++ |---+.+
T Consensus 156 --~~~~~LP---~~ItFihseeL~~ry----P-------~L~~k~RE~ai~Ke~---gAvFligIGg~LsdG~~hd~RaP 216 (330)
T COG2502 156 --GLAPFLP---DQITFIHSQELVARY----P-------DLDPKGRERAIAKEL---GAVFLIGIGGKLSDGKPHDVRAP 216 (330)
T ss_pred --CCcccCc---cceEEeehHHHHHhC----C-------CCCcchhhHHHHHhh---CcEEEEecccccCCCCcCCCCCC
Confidence 0111111 234554443443321 1 122 23455555544 3566655322211 1111111
Q ss_pred CCccce---------ecccccc------CCceeeechhhhcccHHHHHHHHHHcCCC-cccHHHHHHHhccCCCCCcccc
Q 012529 367 DDGRTV---------AAMDMLV------PRIGELIGGSQREERLEYLEGRLDELKLN-RDSYWWYLDLRHYGSVPHAGFG 430 (461)
Q Consensus 367 ~~~~~~---------~~fdl~~------~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~-~~~~~~yl~a~~~G~pP~gG~g 430 (461)
+.+.++ ..=|+++ .++ |+.+.+.|. +.+.+.++++..|.. ...++|.-..+.--+|-+-|-|
T Consensus 217 dYDdWtt~se~~~~gLNGDilvwn~~l~~af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGG 294 (330)
T COG2502 217 DYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGG 294 (330)
T ss_pred CccccCCcccccccccCCcEEEechhccchh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCc
Confidence 111111 1234333 256 999999998 777777777766543 3346777777777789999999
Q ss_pred ccHHHHHHHHcCCCCcccccc
Q 012529 431 LGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 431 iGidRLvm~l~g~~~Irdv~~ 451 (461)
||-.||+|+|++.+.|-+|..
T Consensus 295 IGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 295 IGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred ccHHHHHHHHhcccccceeee
Confidence 999999999999999999865
No 61
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.98 E-value=5.9e-09 Score=81.17 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=60.8
Q ss_pred EEEEEEEeee-ecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEE
Q 012529 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (461)
Q Consensus 32 v~v~G~v~~~-R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~ 110 (461)
|+|.|||.++ |..+++.|+.|+|++| .+||++..+. .....+. |..|+.|.|+|++...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~~-~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNEE-YERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETHH-HHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccHH-hhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 6679999999999996 5999998721 1222455 9999999999999998654 5999999998
Q ss_pred Ee
Q 012529 111 LV 112 (461)
Q Consensus 111 vl 112 (461)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
No 62
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.87 E-value=2.1e-08 Score=99.30 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCC-C-CCCC-----------cceeeeecCCCcccccCCccccCCCccccCcCc-
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASD-C-EGAG-----------EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW- 217 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-eg~~-----------~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~- 217 (461)
..+...+|++|...||.|+.||.+.+.. . +.-. +.|.+. .. ..+.++....+ +..+....
T Consensus 75 ~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~--d~--~vLRtsl~p~l--l~~l~~N~~ 148 (294)
T TIGR00468 75 TRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK--DR--LLLRTHTTAVQ--LRTMEENEK 148 (294)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec--CC--cceecccHHHH--HHHHHhcCC
Confidence 3667788999999999999999998751 1 1100 122221 00 01111110000 00111111
Q ss_pred --ceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHH
Q 012529 218 --SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQ 265 (461)
Q Consensus 218 --~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~ 265 (461)
-|+||||+|||++.. +.+|+|||+|++.-+... |+.++...++.++.
T Consensus 149 ~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~ 199 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLK 199 (294)
T ss_pred CCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 389999999999876 578999999999775432 55565555555543
No 63
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.82 E-value=9.2e-08 Score=93.31 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-------CCCCcceeeeecCCCcccccCCccccCC--Cccc--cC--
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--GL-- 214 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--~~-- 214 (461)
.+.|..+.+.+++.|.++||.||.||++...+. +...+.|.+...+. ..+...|....+ +..+ ..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g--~~l~LRpd~T~~iaR~~a~~~~~~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGG--RDLALRPDLTAPVARAVAENLLSL 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCC--CEEEeCCCCcHHHHHHHHhcCccC
Confidence 367889999999999999999999999988532 12234566532211 122222221111 1000 00
Q ss_pred cCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 215 IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 215 ~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
..--|+|++|+|||+|... ..|.-||+|+++|+-..+
T Consensus 80 ~~p~k~~y~g~vfR~e~~~-~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQ-KGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CCCeEEEEEcCEEecCCCC-CCCccceEEeceeeeCCC
Confidence 0124899999999999873 567899999999986553
No 64
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.80 E-value=5.4e-08 Score=103.16 Aligned_cols=45 Identities=20% Similarity=0.461 Sum_probs=34.0
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 264 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li 264 (461)
|+|+||+|||+|.. +..|++||+|+++.+... ++.+++.++++++
T Consensus 352 rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~f~elkg~l~~ll 398 (489)
T PRK04172 352 KYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVSFRDLLGILKEFY 398 (489)
T ss_pred EEEEecceEcCCCC-CcccCCchheEEEEEEeCCCCHHHHHHHHHHHH
Confidence 79999999999987 468899999999998875 3344444444433
No 65
>PLN02788 phenylalanine-tRNA synthetase
Probab=98.61 E-value=2e-07 Score=94.92 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=29.2
Q ss_pred cceeEEEecccccCCCCCCCCccccccceeeecc
Q 012529 217 WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250 (461)
Q Consensus 217 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~ 250 (461)
-.+++.+|+|||++.. +++|.|+|+|+|.-+.+
T Consensus 147 ~~~~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 147 HTHFLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred CCcEEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 3589999999999998 58999999999987665
No 66
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.54 E-value=2.4e-07 Score=94.50 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=40.6
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+|++|+|||+|...+.+|+++|+|+|.=++.. ++.|++..++.|++.+
T Consensus 209 RIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 209 KLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred EEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 699999999999643579999999999877655 5888888888777654
No 67
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=7e-07 Score=92.08 Aligned_cols=118 Identities=25% Similarity=0.356 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCCC----CcceeeeecCCCcccccCCccccCCC--c-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGA----GEQFCVTTLIPSSREAAESPVDAIPK--T-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~----~~~F~v~~~~~~~~~~~~s~~~~l~~--~-~~ 212 (461)
+-...+..|...+|+-|.+.||.||.||++-... +|.. -+.|... ++...+++..|....|. . ..
T Consensus 16 ~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~--Dkggr~laLRpe~Tapv~R~~~e 93 (429)
T COG0124 16 EDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFK--DKGGRSLALRPELTAPVARAVAE 93 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEE--eCCCCEEEecccCcHHHHHHHHh
Confidence 3567888999999999999999999999987643 2221 2233222 22234444444322110 0 00
Q ss_pred cCcC---cceeEEEecccccCCCCCCCCccccccceeeeccCCH----HHHHHHHHHHHHH
Q 012529 213 GLID---WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL----KDDMACATAYLQY 266 (461)
Q Consensus 213 ~~~~---~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~----~dlm~~~e~li~~ 266 (461)
.... --|.|.+|||||.|.....|- =||+|+++|....+- -+++.++-+++..
T Consensus 94 n~~~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~ 153 (429)
T COG0124 94 NKLDLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEA 153 (429)
T ss_pred ccccccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHH
Confidence 0001 238999999999999988887 499999999877642 4555555555543
No 68
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.36 E-value=1.4e-06 Score=82.78 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhCCcEEEecceeecCCC--CCCC-----------cceeeeecCCCcccccCCccccCCCccccCcCcce
Q 012529 153 ALAYATHKFFQENGFIWISSPIITASDC--EGAG-----------EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (461)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~~-----------~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~r 219 (461)
.+.+.+|++|...||.||.|+.+++... +.-. +++.+ .++.-..+.+|....+.........--|
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l--~NP~~~~LR~sLlp~LL~~l~~N~~~~~ 82 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYI--NDPARLLLRTHTSAVQARALAKLKPPIR 82 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEE--CCCceEEEeccCcHHHHHHHHhcCCCee
Confidence 5667889999999999999999987621 1110 11111 1110011111211111100010012348
Q ss_pred eEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 220 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
+||||+|||++.. +..|+|||+|+++.+++. |+.+++..+|.++..
T Consensus 83 lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~ 130 (218)
T cd00496 83 IFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKE 130 (218)
T ss_pred EEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999876 457899999999999987 899999999988863
No 69
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.29 E-value=7.6e-07 Score=81.30 Aligned_cols=120 Identities=23% Similarity=0.232 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhh-hCCcEEEecceeecCCC-CC-------CCcceeeeecCCCcccccCCccccC---CC-cccc-Cc
Q 012529 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDAI---PK-TKDG-LI 215 (461)
Q Consensus 150 ~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~~~~~~~s~~~~l---~~-~~~~-~~ 215 (461)
++++|++.+++.+. +.||.||.||+|.+... .+ ....|.+...+.....|....+..+ .+ .... .-
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 57899999999999 99999999999998432 11 1345665443322222322211111 00 0000 00
Q ss_pred Cc-ceeEEEecccccCCC--CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 012529 216 DW-SQVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 270 (461)
Q Consensus 216 ~~-~rVfeI~~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~ 270 (461)
.+ =++|++|+|||+|.. ++-..+-||+|.|++....+ ++..+..++++..+..-
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~i 137 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKEI 137 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHHH
Confidence 11 269999999999932 23556779999999987666 78777777777655443
No 70
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=98.25 E-value=1.5e-06 Score=89.33 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=40.7
Q ss_pred eccccccCCce--eeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccc
Q 012529 373 AAMDMLVPRIG--ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 448 (461)
Q Consensus 373 ~~fdl~~~G~~--Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ird 448 (461)
...|+.++| . ||+|+++-. .+.++..|++++.+. | --||||+|||+|++.|.++||.
T Consensus 279 ~evdi~~~g-~WiEi~gcG~v~------p~vl~~~g~~~~~~~--------g----~AfGiGleRlaMl~~gi~DiR~ 337 (460)
T TIGR00469 279 WEIEIWFKD-EWLELCGCGIIR------HDILLRAGVHPSETI--------G----WAFGLGLDRIAMLLFDIPDIRL 337 (460)
T ss_pred eEEEEEECC-eeEEEeeeccCc------HHHHHHcCCCccceE--------E----EEEEecHHHHHHHHcCccHHHH
Confidence 446777777 5 999998754 334556677643211 0 1389999999999999999985
No 71
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.12 E-value=4.5e-06 Score=81.45 Aligned_cols=121 Identities=19% Similarity=0.071 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC------CCcceeeeecCCC----cccccCCccccCC----C
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPS----SREAAESPVDAIP----K 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~~~----~~~~~~s~~~~l~----~ 209 (461)
-.+++.+|++.+++.+.+.||.||.||.|...+. ++ ..+.|.+...+.. ...+....+..+. .
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 5678889999999999999999999999987532 11 2356766432211 1111111000000 0
Q ss_pred ccccCcCc-ceeEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
...+...+ -|+|++++|||+|.+.+ --=.-||+|.|.+..+++.++..+..++++...
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 00000011 25899999999998632 001349999999999999988888888776543
No 72
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.03 E-value=1.4e-05 Score=76.31 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCC--CcccccCCccccCC-----Cc-cc
Q 012529 149 RVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIP--SSREAAESPVDAIP-----KT-KD 212 (461)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~--~~~~~~~s~~~~l~-----~~-~~ 212 (461)
+++..|...+++.|.+.||.||.||.|..... .| ..+.|.++..+. .+..+...|....+ .. ..
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 57889999999999999999999999998542 11 123444432210 00111111211100 00 00
Q ss_pred cCcCc-ceeEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
....+ -|+|++|+|||+|.+.. ..-.-||+|.|+|.-..+ ++..+...+++..
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~-~~~~~~~~e~~~~ 138 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP-EEAEEERREWLEL 138 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH-HHHHHHHHHHHHH
Confidence 00012 37999999999997731 223469999999985443 3333333444433
No 73
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.02 E-value=4.2e-05 Score=74.72 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----C-CcceeeeecCCC--cccccCCccc-----cCCCc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----A-GEQFCVTTLIPS--SREAAESPVD-----AIPKT 210 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~-~~~F~v~~~~~~--~~~~~~s~~~-----~l~~~ 210 (461)
-.+++..|.+.+++-+.+.||.||.||.|..... . | . .+.|.++..+.. ...+...|.. .+...
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~ 110 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAK 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHh
Confidence 4567889999999999999999999999988432 1 1 1 234555432210 0111111110 00000
Q ss_pred c-ccCcCc-ceeEEEecccccCCCCCCC---CccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 211 K-DGLIDW-SQVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 211 ~-~~~~~~-~rVfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
. .....+ -|+|++++|||+|... .+ =.-||+|.|.+...++.++..+..+.++...
T Consensus 111 ~i~s~~~LPlrl~~~~~~fR~E~r~-~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~ 171 (264)
T cd00772 111 FIKSWKDLPQHLNQIGNKFRDEIRP-RFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAY 171 (264)
T ss_pred hhhhhhccCeeEEEEeCeEeCcCCC-CCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHH
Confidence 0 000012 2799999999999532 11 1249999999986688888877777776543
No 74
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.96 E-value=2.3e-05 Score=81.21 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC------CC----CCcceeeeecCCCcccccCCccccCCC--cc-
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPK--TK- 211 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg----~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~- 211 (461)
..-.+++..+...+++.|.++||.||.||++...+. +. ..+.|.+...+ ...+...|...++. ..
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--g~~l~LRpD~T~~iaR~~~ 88 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG--GRSLTLRPEGTAPVARAVI 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC--CCEEeecCCCcHHHHHHHH
Confidence 346778899999999999999999999999966321 11 12455543221 11222222111110 00
Q ss_pred cc--CcC-cceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 212 DG--LID-WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 212 ~~--~~~-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.. ... --|+|++|+|||.|.+.. -|.-||+|+++|....+
T Consensus 89 ~~~~~~~~p~r~~y~g~vfR~e~~~~-gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 89 ENKLLLPKPFKLYYIGPMFRYERPQK-GRYRQFHQFGVEVIGSD 131 (397)
T ss_pred hcccccCCCeEEEEEcCeecCCCCCC-CcccceEEcCeeeeCCC
Confidence 00 001 148999999999998754 45589999999986654
No 75
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.87 E-value=4.2e-05 Score=74.39 Aligned_cols=119 Identities=14% Similarity=0.062 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC----C----CCCcceeeeecCCCcccccCCc---cccCCC-ccccC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESP---VDAIPK-TKDGL 214 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----e----g~~~~F~v~~~~~~~~~~~~s~---~~~l~~-~~~~~ 214 (461)
-.+++..|.+.+++.|.+.||.||.||+|..... + -..+.|.++..+.....+.... ...+.. .....
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~ 109 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccH
Confidence 5677889999999999999999999999987321 1 1235666643221111111110 000000 00000
Q ss_pred cCc-ceeEEEecccccC-CCCCC--CCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 215 IDW-SQVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 215 ~~~-~rVfeI~~~FR~E-~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
..+ -|+|++++|||+| ..... | .-||+|.|++....+..+..+..++++..
T Consensus 110 ~~LPlr~~~~~~~FR~E~~~~~Gl~R-~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 110 KQLPLNLYQIQTKFRDEIRPRFGLMR-GREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred hhCCHHHHhCcceecCCCCCCCceee-eeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 012 2799999999999 43221 2 24999999998777766666655565543
No 76
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.85 E-value=9.7e-05 Score=79.70 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--C------CCCcceeeeecCCCcccccCCcc-----ccCCC-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSREAAESPV-----DAIPK-TK 211 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e------g~~~~F~v~~~~~~~~~~~~s~~-----~~l~~-~~ 211 (461)
.-.+++.+|.+.+|+.|.+.||.||.||.|.+..- + -+.+.|.+..... ..+...|. ..+.. ..
T Consensus 45 ~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~--~~l~LrPT~Ee~~t~~~~~~i 122 (568)
T TIGR00409 45 LGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKG--REFVLGPTHEEVITDLARNEI 122 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCC--CEEEEcCCCcHHHHHHHHHHH
Confidence 35778899999999999999999999999998321 1 1236777643221 11222220 00000 00
Q ss_pred ccCcCc-ceeEEEecccccC-CCCCC--CCccccccceeeeccCCHHHHHHHHHHHH---HHHHHHH
Q 012529 212 DGLIDW-SQVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL---QYVVRYI 271 (461)
Q Consensus 212 ~~~~~~-~rVfeI~~~FR~E-~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li---~~i~~~~ 271 (461)
.+.-.+ -|+|+|++|||+| ..+.. | .-||+|.|.|.-..+.++.....+.++ ..+++.+
T Consensus 123 ~syr~LPlrlyqi~~~fR~E~rpr~Gl~R-~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 123 KSYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred hhccccCeEEEEeeCEeeCCCCCCCCccc-cccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 000012 2799999999999 43322 2 249999999997777666655566554 5555554
No 77
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.81 E-value=0.00012 Score=79.16 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--------CCCCcceeeeecCCCcccccCCcc---ccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLIPSSREAAESPV---DAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~~~~~~~~~s~~---~~l~~~~-~ 212 (461)
-.-++++..|.+.+|+.|.+.||.||.||+|....- +-+.+.|.++........|....+ ..+.... .
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~ 123 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIK 123 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhh
Confidence 335778999999999999999999999999996321 112356766432221111211000 0010000 0
Q ss_pred cCcCc-ceeEEEecccccC-CCCCC--CCccccccceeeeccCCHHHHHHHHHHHH---HHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL---QYVVRYI 271 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E-~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li---~~i~~~~ 271 (461)
....+ -|+|+|++|||+| ..+.. | .-||+|.|.|....+-++.....++++ ..+++.+
T Consensus 124 s~~~LP~r~yqi~~~fR~E~rp~~Gl~R-~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 124 SYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred hcccCCeEEEEeeCCccCCCCCCCcccc-cccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 00011 3799999999999 33221 2 249999999987666555554444444 5555544
No 78
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.78 E-value=7.6e-05 Score=77.64 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCC----CCcceeeeecCCCcccccCCccccCCC--ccc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIPK--TKD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~~ 212 (461)
..-.+.+..+...+++.|.++||.||.||++...+ ++. ..+.|.+... ....+...|...++. ...
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~--~g~~l~LRpd~T~~~ar~~~ 92 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK--GGRSLTLRPEGTAPVVRAVI 92 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC--CCCEEEecCCCcHHHHHHHH
Confidence 44677788999999999999999999999996532 111 2345554321 112222222211110 000
Q ss_pred c-CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 G-LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~-~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
. ...--|+|++|+|||+|.+. ..|.-||+|+++|.-..+
T Consensus 93 ~~~~~p~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 93 EHKLQPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred hCCCCCeEEEEEcCccccCCCC-CCcccceEEcCeeeeCCC
Confidence 0 00124899999999999875 456689999999975543
No 79
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.76 E-value=2e-05 Score=76.64 Aligned_cols=100 Identities=27% Similarity=0.288 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhhhCC--cEEEecceeecCCCCCCCcceeeeecCC---CcccccCCcccc------CCCcc-cc-
Q 012529 147 VARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTLIP---SSREAAESPVDA------IPKTK-DG- 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~g--F~EV~TPiL~~~~~eg~~~~F~v~~~~~---~~~~~~~s~~~~------l~~~~-~~- 213 (461)
-.+++..|+..+|+.|...| |.||.||+|.+. ..|.+.. +. ........|... +.... +.
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~-g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~ 103 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSI-GPVESGGNLGYLRPETAQGIFVNFKNLLEFNR 103 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeee-cccCCCCcccccCCcccchHHHHHHHHHHHhC
Confidence 56788999999999999885 999999999986 4565431 00 000111111111 00000 00
Q ss_pred -CcCcceeEEEecccccCCCCC---CCCccccccceeeeccCCHHHH
Q 012529 214 -LIDWSQVYTFGPTFRAENSNT---SRHLAEFWMIEPELAFADLKDD 256 (461)
Q Consensus 214 -~~~~~rVfeI~~~FR~E~~~t---~rHl~EFtmlE~e~a~~d~~dl 256 (461)
..-+ ++||||+|||+|.+.. .| .=||||.|+|. |.+-+++
T Consensus 104 ~~lP~-~~~qig~~fR~E~~~~~gl~R-~ReF~q~d~~~-f~~~~~~ 147 (254)
T cd00774 104 RKLPF-GVAQIGKSFRNEISPRNGLFR-VREFTQAEIEF-FVDPEKS 147 (254)
T ss_pred CCCCc-hhhhhchhhccccCcccceee-eccchhhheee-eECCCCc
Confidence 1112 6999999999997632 12 35999999997 4443333
No 80
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.67 E-value=0.00011 Score=72.36 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCC---CCCcceeeeecCCCcccccCCccccCC--Cccc--c-CcC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--G-LID 216 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e---g~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--~-~~~ 216 (461)
..-.+.+..+.+.+++.|..+||-||.||++.....- ...+.|.+... ....++..|...++ +..+ . ...
T Consensus 16 p~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~--~g~~l~LRpD~T~~iaR~~a~~~~~~~ 93 (281)
T PRK12293 16 GKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDE--KNHQISLRADSTLDVVRIVTKRLGRST 93 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECC--CCCEEEECCcCCHHHHHHHHHhcccCC
Confidence 3456778899999999999999999999999864331 22345654322 12233333322211 0000 0 001
Q ss_pred -cceeEEEecccccCCCCCCCCccccccceeeeccCC-HHHHHHHHHHHHHH
Q 012529 217 -WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQY 266 (461)
Q Consensus 217 -~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~dlm~~~e~li~~ 266 (461)
--|.|.+|+|||.|. .||+|+.+|.-..+ ..+++.++-+.++.
T Consensus 94 ~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~ 138 (281)
T PRK12293 94 EHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEE 138 (281)
T ss_pred CceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHH
Confidence 238999999999873 49999999987764 55555555554443
No 81
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.64 E-value=0.00023 Score=70.80 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC----C----CCCcceeeeecCCCcccccCCccc-----cCCCc-cc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESPVD-----AIPKT-KD 212 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----e----g~~~~F~v~~~~~~~~~~~~s~~~-----~l~~~-~~ 212 (461)
-.+++.+|.+.+++.+.++||.||.||+|..... + -..+.|.++.-+ ..+...|.. .+... ..
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~---~~l~LRP~~~~~~~~~~~~~~~ 105 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEED---EEYGLKPMNCPGHCLIFKSKPR 105 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCC---ceEEEcccCCHHHHHHHHhhcc
Confidence 5677889999999999999999999999987432 1 123456553211 111112210 00000 00
Q ss_pred cCcCc-ceeEEEecccccCCCCC----CCCccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSNT----SRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~t----~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
....+ -|+|++|+|||+|.+.. .| .-||+|.|++.- +.-++..+.+++++..+.
T Consensus 106 s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R-~reF~q~e~~i~-~~~e~~~~e~~e~l~~~~ 164 (298)
T cd00771 106 SYRDLPLRLAEFGTVHRYEQSGALHGLTR-VRGFTQDDAHIF-CTPDQIKEEIKGVLDLIK 164 (298)
T ss_pred chhhCCeEEEEecCcccCCCCCCCCCccc-cccEEECCEEEE-eCCcchHHHHHHHHHHHH
Confidence 00012 27999999999997631 12 249999999985 433444444444444433
No 82
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.55 E-value=0.00018 Score=74.32 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-------CCCCcceeeeecCCCcccccCCccccCC--Cccc---
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--- 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--- 212 (461)
..-.+.|..+...+++.|.++||.||.||++..... +...+.|.+...+ ....++..|...++ +..+
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~-~g~~l~LRpD~T~~iaR~~a~~~ 92 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQL-SGRTLGLRPDMTAQIARIAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecC-CCCEEEECCCCcHHHHHHHHHhc
Confidence 345678899999999999999999999999974211 1123456543320 12223333322211 1100
Q ss_pred -cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-H---HHHHHHHHHHHHH
Q 012529 213 -GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 266 (461)
Q Consensus 213 -~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~---~dlm~~~e~li~~ 266 (461)
....--|+|++|+|||.|.... -+.-||+|+.+|.-..+ . -+++.++-+.++.
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~~~-gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~ 150 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQERGL-GRSREFLQSGVELIGDAGLEADAEVILLLLEALKA 150 (391)
T ss_pred cCCCCCeEEEeeceeeecCCCcC-CCccchhccceEEeCCCCchHHHHHHHHHHHHHHH
Confidence 0011248999999999998743 34579999999986653 2 3444444444443
No 83
>PLN02908 threonyl-tRNA synthetase
Probab=97.53 E-value=0.00023 Score=78.76 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CC-------CCcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
.-.-.+++..++..+|+.+.++||.||.||.|.+..- ++ ..+.|.++- +.....+ .|... +...
T Consensus 317 lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~-~~~~~~L--rp~~~~~~~~~~~~ 393 (686)
T PLN02908 317 LPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEI-EKQEFGL--KPMNCPGHCLMFAH 393 (686)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEec-CCeeEEE--cCCCcHHHHHHHhc
Confidence 3556789999999999999999999999999998431 11 123455421 1111111 11111 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCC---CCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~---t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
....-.+ -|+|++|+|||+|.+- +-.=.-||+|.|++. |+..+++.+.+++++..+..-+
T Consensus 394 ~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~v~ 458 (686)
T PLN02908 394 RVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDYVY 458 (686)
T ss_pred cccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHHHH
Confidence 0000001 2799999999999772 111134999999998 8888888888888877665433
No 84
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.52 E-value=0.00019 Score=75.94 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC------CCcceeeeecCCC--cccccCCc--cccC---C-C
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPS--SREAAESP--VDAI---P-K 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~~~--~~~~~~s~--~~~l---~-~ 209 (461)
-.+++..|...+++-+.+.||.||.||.|.+..- +| ..+.|.++..+.. ...+...| +..+ . .
T Consensus 37 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~ 116 (472)
T TIGR00408 37 GFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhc
Confidence 4566899999999999999999999999987331 12 3367777654320 01111111 1000 0 0
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCC--CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
...+...+ -|+||+++|||+|.+.+. -=.-||+|.|.+..|++.++..+..++++...
T Consensus 117 ~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 117 WVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred cccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 01110012 269999999999987320 11359999999988999888887777776544
No 85
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.50 E-value=0.00025 Score=70.87 Aligned_cols=118 Identities=22% Similarity=0.298 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCCCCcceeeeecCCCcccccCCccccCC--Cccc--c-
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--G- 213 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--~- 213 (461)
..-.+.+..+.+.+++.|..+||.+|+||++.... ++...+.|.+.. .....+...|-..++ +... .
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D--~~G~~l~LR~D~T~~iaR~~a~~~~ 84 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLD--RSGRVLALRPDLTVPIARYVARNLN 84 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEEC--TTSSEEEE-SSSHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEe--cCCcEeccCCCCcHHHHHHHHHhcC
Confidence 44677889999999999999999999999998642 222335555432 211222222211111 0000 0
Q ss_pred CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-HH---HHHHHHHHHHH
Q 012529 214 LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATAYLQ 265 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~---dlm~~~e~li~ 265 (461)
.....|+|.+|+|||.+... ..+.-||+|+.+|.-..+ .. +++.++-+++.
T Consensus 85 ~~~~~r~~y~g~vfR~~~~~-~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 85 LPRPKRYYYIGPVFRYERPG-KGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SSSSEEEEEEEEEEEEETTT-TTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEcceeeccccC-CCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 12357899999999999764 345579999999987654 33 55555555554
No 86
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.50 E-value=0.00038 Score=72.85 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC------CCC----CcceeeeecCCCcccccCCccccCCC--c-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPK--T-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~----~~~F~v~~~~~~~~~~~~s~~~~l~~--~-~~ 212 (461)
.-...|..+...+++.|..+||-||.||++..... +.. .+.|.+...+ ...++..|....+. . .+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~--g~~l~LRpd~T~~iaR~~~~ 93 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS--NRDITLRPEGTAGIVRAFIE 93 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC--CCEEEeCCCCcHHHHHHHHH
Confidence 45667899999999999999999999999987421 111 3456543221 12233333222111 0 00
Q ss_pred --c-CcCc-ceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 --G-LIDW-SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 --~-~~~~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
. .... -|.|++|+|||.|.+...|- -||+|+++|.-..+
T Consensus 94 ~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~ 136 (430)
T CHL00201 94 NKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSI 136 (430)
T ss_pred ccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCC
Confidence 0 1112 48999999999998766665 49999999986553
No 87
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.48 E-value=0.00033 Score=77.09 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
...-.+++..+.+.+++.|...||.||.||++....- .| ..+.|.+...+ ...+...|... +...
T Consensus 266 lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~--~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESD--GEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCC--CcEEEEecCCcHHHHHHHhC
Confidence 4556788999999999999999999999999987431 12 22456543222 12222222111 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCCC--C--CCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~t--~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
......+ -|+|++|+|||+|.+.. . | .-||||+|+|. |..-+...+.+.+++..+.+
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~~~~~-~g~~~~~~~e~~eii~l~~~ 406 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMR-VRGFTQDDAHI-FCTPEQIEEEVKKVIDLILD 406 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcce-eeeeEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 0000012 28999999999998731 1 2 14999999997 65544444444444444333
No 88
>PLN02972 Histidyl-tRNA synthetase
Probab=97.47 E-value=0.00034 Score=76.74 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCCCCcceeeeecCCCcccccCCccccCC--Ccccc-
Q 012529 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIP--KTKDG- 213 (461)
Q Consensus 143 ~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~~- 213 (461)
....-..+|..+...+++.|..+||.||+||++.... ++...+.|.+.. .....+...|...+| +..+.
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D--~gGr~LaLRPDlTvPiAR~vA~n 413 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYVAMN 413 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEEC--CCCCEEEeCCCChHHHHHHHHhC
Confidence 4556778899999999999999999999999997532 222223454432 222223333322221 11111
Q ss_pred CcCcceeEEEecccccCCCCCCCCccccccceeeeccC-C-H---HHHHHHHHHHHHH
Q 012529 214 LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQY 266 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d-~---~dlm~~~e~li~~ 266 (461)
...--|.|+||+|||.|..... +.-||+|+++|.... + . -|++.++-+.++.
T Consensus 414 ~~~p~KrYyiG~VFR~e~pqkG-R~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 414 GITSFKRYQIAKVYRRDNPSKG-RYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred CCCcceEEEeccEEecCCCCCC-CCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 0012367889999999987444 457999999999764 2 1 3455555555543
No 89
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.46 E-value=0.00039 Score=71.89 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--C--C---CCcceeeeecCCCcccccCCccccCC--Cccc---
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G---AGEQFCVTTLIPSSREAAESPVDAIP--KTKD--- 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e--g---~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--- 212 (461)
-.-.+.+..+.+.+++.|..+||-||+||++..... . | ....|.+.... ....++..|...++ +..+
T Consensus 18 p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~-~g~~l~LRpD~T~~iaR~~a~~~ 96 (392)
T PRK12421 18 PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQL-SGRLMGVRADITPQVARIDAHLL 96 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCC-CCcEEEECCcCCHHHHHHHHhhc
Confidence 345677889999999999999999999999985331 1 1 12345443211 12223333322211 1000
Q ss_pred cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-HH---HHHHHHHHHHHHH
Q 012529 213 GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~---dlm~~~e~li~~i 267 (461)
....-.|.|.+|+|||.+.....|. -||+|+.+|.-..+ .. +++.++-+.++.+
T Consensus 97 ~~~~p~R~~Y~g~VfR~~~~~~gr~-rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 97 NREGVARLCYAGSVLHTLPQGLFGS-RTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CCCCceEEEEeeeEEEcCCCcCCCc-CccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 0011358999999999987654554 69999999986653 32 5666666655544
No 90
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.45 E-value=0.00041 Score=69.03 Aligned_cols=119 Identities=15% Similarity=0.207 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CC-------CCcceeeeecCCCcccccCCcccc---CCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDA---IPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~~~~~~~s~~~~---l~~~~-~ 212 (461)
..-.+++.+|.+.+++.+.+.||.||.||.|....- ++ ..+.|.++. ....+....+.. +.... .
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~~---~~~~L~pt~e~~~~~l~~~~~~ 125 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEG---EDLYLIATAEVPLAALHRDEIL 125 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEecC---CCEEEeecCCHHHHHHHhcccC
Confidence 346788899999999999999999999999998432 21 224555531 112221111100 11000 0
Q ss_pred cCcCc-ceeEEEecccccCCC------CCCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~------~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
....+ -|+|++|+|||+|.+ .+---.-||+|.|.+ .|+.-++..+..++++...
T Consensus 126 s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~~~~~~~~l~~~ 186 (297)
T cd00770 126 EEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISNA 186 (297)
T ss_pred CHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHHHHHHHHHHHHH
Confidence 00011 269999999999965 121124599999997 4665566666666655544
No 91
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.45 E-value=0.00051 Score=68.91 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC------CCCCcceeeeecCCCcccccCCccccCCC--ccc----c
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPK--TKD----G 213 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~~----~ 213 (461)
.-.+++..+...+++.|.++||.||+||++..... +...+.|.+...+ ...+...|....+. ... .
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~--g~~l~LRpD~T~~iaR~~~~~~~~ 83 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL--GRVLGLRPDMTTPIARAVSTRLRD 83 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC--CCEEeecCcCcHHHHHHHHHhccc
Confidence 35677899999999999999999999999987322 1223455543221 12222233222110 000 1
Q ss_pred CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 214 LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
...-.|+|++|+|||.|... .-+.-||+|+.+|.-..+
T Consensus 84 ~~~p~r~~y~g~VfR~~~~~-~gr~re~~Q~g~Eiig~~ 121 (314)
T TIGR00443 84 RPLPLRLCYAGNVFRTNESG-AGRSREFTQAGVELIGAG 121 (314)
T ss_pred CCCCeEEEEeceEeecCCCc-CCCcccccccceEEeCCC
Confidence 11135899999999999874 456689999999975543
No 92
>PLN02530 histidine-tRNA ligase
Probab=97.44 E-value=0.00036 Score=74.20 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CC-CCCcceeeeecCCCcccccCCccccCCC--ccc--c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CE-GAGEQFCVTTLIPSSREAAESPVDAIPK--TKD--G 213 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~e-g~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~~--~ 213 (461)
..-.++|..+...+++.|...||-||.||++.... ++ -..+.|.+.. .....++..|...++. ... .
T Consensus 81 p~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D--~~g~~l~LRpD~T~~iaR~~~~~~ 158 (487)
T PLN02530 81 PEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFED--KGGRRVALRPELTPSLARLVLQKG 158 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEEC--CCCCEEecCCCCcHHHHHHHHhcc
Confidence 44677889999999999999999999999998732 11 1224554422 2122333333322211 100 0
Q ss_pred -CcCc-ceeEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHH
Q 012529 214 -LIDW-SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYL 264 (461)
Q Consensus 214 -~~~~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d----~~dlm~~~e~li 264 (461)
...+ -|.|++|+|||.|.....| .-||+|+.+|.-..+ --+++.++.+.+
T Consensus 159 ~~~~~P~r~~y~g~vfR~e~~q~gr-~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l 214 (487)
T PLN02530 159 KSLSLPLKWFAIGQCWRYERMTRGR-RREHYQWNMDIIGVPGVEAEAELLAAIVTFF 214 (487)
T ss_pred cccCCCeEEEEEcCEEcCcCCCCCC-ccceEEcCeeEeCCCCcchhHHHHHHHHHHH
Confidence 0012 3899999999999875444 469999999986553 234444444433
No 93
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.43 E-value=0.00049 Score=71.75 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhh-hCCcEEEecceeecCCC-CCC-------CcceeeeecCCCcccccCCccc---cCCCcc-
Q 012529 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAESPVD---AIPKTK- 211 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~~s~~~---~l~~~~- 211 (461)
..-.++..++++.+++.+. +.||.||.||.|..... ++. .+.|.|+. ...++....+. .+..-.
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~---~~~~L~pTsE~~l~~l~~~~~ 243 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED---DDLYLIPTAEVPLTNLHRDEI 243 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEecC---CCEEEEeCCcHHHHHHHhccc
Confidence 3467788999999999988 99999999999998432 222 24555531 11222111000 000000
Q ss_pred ccCcCc-ceeEEEecccccCCCCC--CC----CccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 212 DGLIDW-SQVYTFGPTFRAENSNT--SR----HLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 212 ~~~~~~-~rVfeI~~~FR~E~~~t--~r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
.....+ -|+|++++|||+|-.-. .+ =.-||+|.|.+ +|+.-++..+..++++...-
T Consensus 244 ~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~ 306 (425)
T PRK05431 244 LDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAE 306 (425)
T ss_pred CCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 000011 26999999999996411 01 13499999999 58877887777777766543
No 94
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.43 E-value=0.00057 Score=74.07 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--C-C-----CCcceeeeecCCCcccccCCcccc-----CCC-
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E-G-----AGEQFCVTTLIPSSREAAESPVDA-----IPK- 209 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e-g-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~- 209 (461)
.-.-.+++..|.+.+|+.+.+.||.||.||++....- . | ..+.|.++..+. ..+...|... +..
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~--~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDN--REFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCC--ceEEEecCCCHHHHHHHhC
Confidence 3456778899999999999999999999999987432 1 2 123454432211 1111122111 000
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCC-----CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.......+ -|+|++|+|||+|.+ +. |- -||+|.|+|.- ...++.....++++..+
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~-~~~~~~~~e~~~~i~~~ 334 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQS-GELHGLMRV-RGFTQDDAHIF-CTEDQIKEEFKNQFRLI 334 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCC-cCCcCcccc-cceEEeeeEEE-cCHHHHHHHHHHHHHHH
Confidence 00000012 379999999999955 32 32 49999999974 34455555544444433
No 95
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.41 E-value=0.00055 Score=74.40 Aligned_cols=124 Identities=20% Similarity=0.256 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
...-.+++..+.+.+++.|.+.||.||.||+|....- .| ..+.|.+...+. ..+...|... +...
T Consensus 202 ~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~--~~~~LRP~~~~~~~~~~~~ 279 (575)
T PRK12305 202 HPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDE--EEYYLKPMNCPGHILIYKS 279 (575)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCC--ceEEEecCCCHHHHHHHhc
Confidence 4556788999999999999999999999999998431 12 124555422111 1122222111 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
......+ -|.|++|+|||+|.+. .+| .-||+|.|+|. |++.+...+.+.+++..+.+-+
T Consensus 280 ~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~~~~ 344 (575)
T PRK12305 280 RLRSYRDLPLRLAEFGTVYRYEKSG-VLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVLELL 344 (575)
T ss_pred ccCChhhCCHhhEEecccccCCCCC-CCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHHHHH
Confidence 0000012 2799999999999873 211 24999999995 7776666666666666555444
No 96
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.39 E-value=0.00072 Score=70.97 Aligned_cols=119 Identities=16% Similarity=0.066 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----CCCcceeeeecCCCcccccCCcc---ccCCCc-cccC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESPV---DAIPKT-KDGL 214 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~~s~~---~~l~~~-~~~~ 214 (461)
-.+++..|.+.+|+-+.+.||-||.||.|.+.. ++ -..+.|.+.........+....+ ..+... ..+-
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~sy 125 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSY 125 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhc
Confidence 577889999999999999999999999999742 11 12356766432221111111000 000000 0000
Q ss_pred cCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 215 IDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 215 ~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
-++ -|+|||++|||+|.+ + +| .-||+|-|.|....+.+++.+..++++...
T Consensus 126 rdLPlrl~q~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~ 181 (439)
T PRK12325 126 KDLPLNLYHIQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAY 181 (439)
T ss_pred hhhchHheEecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHH
Confidence 012 379999999999954 2 22 359999999987678777776655555443
No 97
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.39 E-value=0.00052 Score=71.74 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----C-CCC----CcceeeeecCCCcccccCCccccCC--Ccccc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD----C-EGA----GEQFCVTTLIPSSREAAESPVDAIP--KTKDG 213 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~-eg~----~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~~ 213 (461)
..-..++..+...+++.|..+||.||.||+|.... . +++ .+.|.+...+ ...+...|...++ +..+.
T Consensus 15 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~--g~~l~LRpD~T~~iaR~va~ 92 (423)
T PRK12420 15 PEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG--KRDLALRYDLTIPFAKVVAM 92 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC--CceecccccccHHHHHHHHh
Confidence 44567788999999999999999999999998742 1 111 2355543222 2233333322221 11111
Q ss_pred --CcCcc-eeEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHHHH
Q 012529 214 --LIDWS-QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQY 266 (461)
Q Consensus 214 --~~~~~-rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d----~~dlm~~~e~li~~ 266 (461)
..... |.|++|+|||.|.... -+.-||+|+.+|.-..+ --+++.++-+.++.
T Consensus 93 ~~~~~~p~r~~y~g~vfR~~~~~~-gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 93 NPNIRLPFKRYEIGKVFRDGPIKQ-GRFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred CcCCCCCeeEEEEcceECCCCCCC-CccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 11122 7899999999998743 45689999999986543 24556655555553
No 98
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.39 E-value=0.00047 Score=75.85 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CCC-----CcceeeeecCCCcccccCCccc-----cCCCc-cc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVD-----AIPKT-KD 212 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~~~~~~~~~s~~~-----~l~~~-~~ 212 (461)
=.+++..|.+.+++.+.+.||.||.||+|....- .|. .+.|.++. + +......|.. .+... ..
T Consensus 273 g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~-~--~~~~~LrP~~~~~~~~~~~~~~~ 349 (639)
T PRK12444 273 GQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEV-D--NKSFALKPMNCPGHMLMFKNKLH 349 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecC-C--CcEEEEccCCCHHHHHHHhCccc
Confidence 3456777999999999999999999999998532 121 13332211 1 1111111110 01000 00
Q ss_pred cCcCc-ceeEEEecccccCCCCC--C--CCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~t--~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
....+ -|+|++|+|||.|.+.+ . | .-||+|.|++ .|++-+++.+..++++..+..
T Consensus 350 sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~~ 409 (639)
T PRK12444 350 SYRELPIRMCEFGQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIKSVMAQIDY 409 (639)
T ss_pred ChhhCCceeEEeccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHHHHHHHHHH
Confidence 00011 37999999999998632 1 2 2499999999 688877777766666655443
No 99
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.37 E-value=0.00038 Score=74.57 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--CCC------CcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA------GEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~------~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
.-.-.++|..+...+|+.+.++||.||.||.|....- .++ .+.|.++. +. ......|... ++..
T Consensus 164 lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~-~~--e~~~LrPm~cp~~~~~~~~ 240 (545)
T PRK14799 164 HPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNM-EG--DEYGVKPMNCPAHILIYKS 240 (545)
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeec-cC--ceEEeccCCCHHHHHHHhc
Confidence 4557889999999999999999999999999876432 111 12343321 11 1112222111 1100
Q ss_pred -cccCcCc-ceeEEEecccccCCCCCC---CCccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~t~---rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
..+.-.+ =|.|++|+|||.|.+... -=.-||||.|+.. |++.+++.+.+.+++..+..-.
T Consensus 241 ~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~vy 305 (545)
T PRK14799 241 KPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVEVW 305 (545)
T ss_pred cccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHHH
Confidence 0110011 279999999999988420 1235999999998 8888887777777776655443
No 100
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.34 E-value=0.00037 Score=73.82 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC------CCcceeeeecCCC----cccccCCccccC----CC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPS----SREAAESPVDAI----PK 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~~~----~~~~~~s~~~~l----~~ 209 (461)
-++++..|...+++.|.+.||.||.||.|.+..- ++ ..+.|.|+..+.. ...+....+..+ ..
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 5788899999999999999999999999987532 11 3356777543311 011111110000 00
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCC--CCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
...+..++ -|+||+++|||+|.+ +. -=.-||+|.|.+.++++.++..+.+++++..
T Consensus 123 ~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~ 181 (477)
T PRK08661 123 WIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEI 181 (477)
T ss_pred hhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHH
Confidence 00010012 269999999999986 43 1245999999999999988887777777653
No 101
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.26 E-value=0.00047 Score=71.72 Aligned_cols=119 Identities=14% Similarity=0.234 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-------CcceeeeecCCCcccccCC---ccccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAES---PVDAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~~s---~~~~l~~~~-~ 212 (461)
..-.++..++++.+++.+.+.||.||.||.|.+... ++. .+.|.++. ...++... +...+.... .
T Consensus 170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~---~~~~L~pTsE~~~~~~~~~~i~ 246 (418)
T TIGR00414 170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED---TDLYLIPTAEVPLTNLHRNEIL 246 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC---CCEEEEeCCcHHHHHHHhCcCC
Confidence 456888999999999999999999999999998543 222 24455431 11122111 000000000 0
Q ss_pred cCcCc-ceeEEEecccccCCCC------CCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
....+ -|+|++++|||+|-+- +--=.-||+|.|. ..|++-++..+..++++...
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~ 307 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDA 307 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHH
Confidence 00011 2699999999999531 1001349999999 45888788777777766654
No 102
>PLN02678 seryl-tRNA synthetase
Probab=97.11 E-value=0.0011 Score=69.34 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCC-------cceeeeecCCCccccc-CC--ccccCCCccc-c
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAA-ES--PVDAIPKTKD-G 213 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~-~s--~~~~l~~~~~-~ 213 (461)
...+++.++++.+++++.++||.||.||.|..... ++.+ +.|.+..-+. +.++. ++ +.-.+..... .
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~-~~yLi~TaE~~l~~~h~~~~~s 250 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGD-DKYLIATSEQPLCAYHRGDWID 250 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCC-ceeeecccccccChHHhcccCC
Confidence 36888999999999999999999999999987443 2322 3444421000 11111 11 0000000000 0
Q ss_pred CcCc-ceeEEEecccccCCCCCC--C----CccccccceeeeccCCHHH--HHHHHHHHHHHH
Q 012529 214 LIDW-SQVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKD--DMACATAYLQYV 267 (461)
Q Consensus 214 ~~~~-~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~d~~d--lm~~~e~li~~i 267 (461)
...+ -|++++++|||+|-+... + =.-+|+++|.. +|+.-++ ..+..|+++...
T Consensus 251 ~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 251 PKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred HHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHHHHHHHHH
Confidence 0001 269999999999975111 1 12389999994 4554444 566666666543
No 103
>PLN02837 threonine-tRNA ligase
Probab=97.08 E-value=0.0013 Score=71.76 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-------CcceeeeecCCCcccccCCccc---cCCCc-c
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAESPVD---AIPKT-K 211 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~~s~~~---~l~~~-~ 211 (461)
...-.+++.++++.+++...++||.||.||.|....- .+. .+.|.+........-+....+. .++.. .
T Consensus 243 ~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~ 322 (614)
T PLN02837 243 HPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKL 322 (614)
T ss_pred echHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCcc
Confidence 4557889999999999999999999999999998542 221 2344431111100111111000 00000 0
Q ss_pred ccCcCc-ceeEEEecccccCCCCCCC----CccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 012529 212 DGLIDW-SQVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 270 (461)
Q Consensus 212 ~~~~~~-~rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~ 270 (461)
...-++ -|++|+++|||+|.+ +.+ =.-||+|.|.+. |+..++..+..++++..+-.-
T Consensus 323 ~SyrdLPlr~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~ 384 (614)
T PLN02837 323 HSYRDLPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEI 384 (614)
T ss_pred CChhHCCHhhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 000011 269999999999976 222 134999999996 998888888888877755443
No 104
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0005 Score=67.90 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=41.4
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+|.|-+|||||-. +.+||+||.|+|--.+.. ++-++|.++++++..+
T Consensus 335 K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 335 KYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred cccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 69999999999999 589999999999776654 6899999998887643
No 105
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=97.00 E-value=0.0059 Score=47.42 Aligned_cols=73 Identities=15% Similarity=0.326 Sum_probs=54.2
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEE
Q 012529 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (461)
Q Consensus 32 v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~v 111 (461)
|.|.|-|.+.+..++=.|+.|+|+.+ .|.|++-+... ...... +..||-|.|.|.+.- +++ .+.|.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~a--~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~~G--~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDETG--TVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-RDG--QLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCCE--EEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-CCe--EEEEEEeeEEE
Confidence 46788888765466668999999874 59998865432 111224 899999999999875 444 69999999987
Q ss_pred e
Q 012529 112 V 112 (461)
Q Consensus 112 l 112 (461)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 106
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.98 E-value=0.011 Score=46.15 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=54.6
Q ss_pred EEEEEEEeeeec-CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEE
Q 012529 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (461)
Q Consensus 32 v~v~G~v~~~R~-~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~ 110 (461)
++|.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++..+ ..|..|+.|.|+|.+...+.+ .++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~-~~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLG-FPLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCC-CCCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 678999999886 55699999999985 4999887653 23222 238999999999999865322 25788888764
No 107
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=96.98 E-value=0.0027 Score=69.10 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--------CCCCcceeeeecCCCcccccCCcccc---CC-Cccc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLIPSSREAAESPVDA---IP-KTKD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~~~~~~~~~s~~~~---l~-~~~~ 212 (461)
-.-.+++..+.+.+++.+.+.||.+|.||.+..... .-..+.|.++.-+. ...+....+.. ++ ....
T Consensus 224 P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e-~l~Lrp~~c~~~~~~~~~~~~ 302 (613)
T PRK03991 224 PKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKK-DLMLRFAACFGQFLMLKDMTI 302 (613)
T ss_pred cHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCc-eEEEecCCCHHHHHHHhCCcC
Confidence 456889999999999999999999999999954311 11235565532111 11111000000 00 0000
Q ss_pred cCcCc-ceeEEEec-ccccCCCCCCC----CccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGP-TFRAENSNTSR----HLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 213 ~~~~~-~rVfeI~~-~FR~E~~~t~r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
+.-++ -|+||+|+ |||+|.+ +.. =+-||||.|.+.--.+.++.++..++++..+..-+
T Consensus 303 SyrdLPlr~~e~~~~~fR~E~~-g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 303 SYKNLPLKMYELSTYSFRLEQR-GELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETG 366 (613)
T ss_pred chhhCChhhheecchheeCCCC-CCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 00011 26999999 9999976 221 24599999999744458999998888887765544
No 108
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.96 E-value=0.0024 Score=65.50 Aligned_cols=110 Identities=22% Similarity=0.189 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC------CC-CCcceeeeecCCCcccccCCccccCCC--c-cc-cCcCccee
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLIPSSREAAESPVDAIPK--T-KD-GLIDWSQV 220 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg-~~~~F~v~~~~~~~~~~~~s~~~~l~~--~-~~-~~~~~~rV 220 (461)
..+...+++.|..+||.||.||++..... +. ....|.+...+ ...+...|...++- . .. ....-.|.
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~--G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDEN--GEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCC--CCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 37889999999999999999999987431 11 12355543221 22233333222110 0 00 11123589
Q ss_pred EEEecccccCCCCCCCCccccccceeeeccC-C-H---HHHHHHHHHHHHHH
Q 012529 221 YTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQYV 267 (461)
Q Consensus 221 feI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d-~---~dlm~~~e~li~~i 267 (461)
|++|+|||.|.. | .-||+|+.+|.-.. + . -|++.++-+.+..+
T Consensus 86 ~Y~g~VfR~~~g---r-~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 86 AYLGEVFRQRRD---R-ASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEEccEEECCCC---C-CCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 999999999822 2 35999999998764 3 2 36677766666543
No 109
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.94 E-value=0.0037 Score=65.88 Aligned_cols=50 Identities=22% Similarity=0.360 Sum_probs=38.3
Q ss_pred eeEEEecccccCCCCCCCCc----cccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl----~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
++.|+|+|||+|-+ + +|- -||||.|.+ .|++.+++.+.+..++..+..-+
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~~l 241 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKNWL 241 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHHHH
Confidence 49999999999977 4 442 799999997 68888777777666665554443
No 110
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.83 E-value=0.017 Score=47.04 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=56.2
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch--hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEE
Q 012529 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 32 v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i 109 (461)
|++.|+|.++...+.-.=+.|.|+||. |-+.+....... ..... +..|++|.|.|++..-+. ...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~--I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~g---~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGT--IEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQG---KKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCc--EEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccCC---eeEEEEEEE
Confidence 789999999998765556789999974 998887654321 12334 899999999999976543 366777777
Q ss_pred EEecc
Q 012529 110 VLVGK 114 (461)
Q Consensus 110 ~vl~~ 114 (461)
..+..
T Consensus 75 ~~v~d 79 (95)
T cd04478 75 RPVTD 79 (95)
T ss_pred EEeCC
Confidence 76554
No 111
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.53 E-value=0.028 Score=45.74 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=50.9
Q ss_pred EEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-------------------hhhhhhcCCCCCcEEEEEeeEee
Q 012529 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-------------------YDQVKSGLITTGASIWIQGNVVP 94 (461)
Q Consensus 34 v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-------------------~~~~~~~~l~~g~~V~v~G~~~~ 94 (461)
|.|+|.+++......-+.|.|+||. |-|++...... .+.... +..|++|.|.|++..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 6899999998866666789999984 99988754320 012345 999999999999977
Q ss_pred cCCCCccEEEEEeEEE
Q 012529 95 SQGSKQKVELKVNKIV 110 (461)
Q Consensus 95 ~~~~~~~~el~~~~i~ 110 (461)
-... ..|.++.+.
T Consensus 78 frg~---~ql~i~~~~ 90 (92)
T cd04483 78 YRGE---REINASVVY 90 (92)
T ss_pred cCCe---eEEEEEEEE
Confidence 5433 556666554
No 112
>PLN02320 seryl-tRNA synthetase
Probab=96.44 E-value=0.014 Score=61.56 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCCc--------ceeeeecCCCccccc-CC--ccccCCCccc-c
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGE--------QFCVTTLIPSSREAA-ES--PVDAIPKTKD-G 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~--------~F~v~~~~~~~~~~~-~s--~~~~l~~~~~-~ 213 (461)
..++..++++.++++..++||.||.||.|..... ++.+. +|.+. ..+.++. ++ |...+..... .
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie---~ed~~Li~TaE~Pl~~~~~~~ils 308 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID---GSDQCLIGTAEIPVGGIHMDSILL 308 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC---CCceEEeecccccccccccccccC
Confidence 4456678899999999999999999999998543 33331 22221 1112221 11 1111100000 0
Q ss_pred CcCc-ceeEEEecccccCCCC-C-------CCCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 214 LIDW-SQVYTFGPTFRAENSN-T-------SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 214 ~~~~-~rVfeI~~~FR~E~~~-t-------~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
...+ -|++++++|||.|-+. + +-| +|++.|... |+..++..+..++++..+-.
T Consensus 309 ~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~Rvh--QF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 309 ESALPLKYVAFSHCFRTEAGAAGAATRGLYRVH--QFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred HhhCCceeEEeccccccccccCCCcCCCceeee--eeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 0011 2699999999999551 1 234 899999875 77778888888888776544
No 113
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.0026 Score=66.25 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhh--CCcEEEecceeec
Q 012529 148 ARVRNALAYATHKFFQE--NGFIWISSPIITA 177 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~--~gF~EV~TPiL~~ 177 (461)
..++..|+++.|++|-. .+++||+||+|.+
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 34677999999999954 6899999999998
No 114
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=96.25 E-value=0.042 Score=44.61 Aligned_cols=74 Identities=19% Similarity=0.410 Sum_probs=54.5
Q ss_pred EEEEEEeeeec--CCCeEEEEEEcCccCccEEEEEeCCCcchhh-hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEE
Q 012529 33 VVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 33 ~v~G~v~~~R~--~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i 109 (461)
.|.|.|.+++. .++-.|+.|.|.++ .|.|++-+..-.+.. ... |..||-|.|.|.+..-. .|.++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~l 71 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEKL 71 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEEE
Confidence 68999998865 46678899999874 599877654311212 234 99999999999985543 5899999
Q ss_pred EEeccCC
Q 012529 110 VLVGKSD 116 (461)
Q Consensus 110 ~vl~~~~ 116 (461)
++++-..
T Consensus 72 ~~~glg~ 78 (91)
T cd04482 72 RVIRLAR 78 (91)
T ss_pred EECCCcc
Confidence 9877643
No 115
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.20 E-value=0.019 Score=56.21 Aligned_cols=106 Identities=10% Similarity=-0.091 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--CCC----CcceeeeecCCCcccccCCccccCC--Ccccc-Cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA----GEQFCVTTLIPSSREAAESPVDAIP--KTKDG-LI 215 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~----~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~~-~~ 215 (461)
+..+..+..+.+.+++.|.++||-||+||++-..+. ..+ ...|...+ ......++..|...++ +..+. ..
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~-~~~Gr~laLRpD~T~~iAR~~a~~~~ 82 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFW-QHEHQIYALRNDFTDQLLRYYSMYPT 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeee-cCCCCEEEEcCCCCHHHHHHHHhcCC
Confidence 445667788999999999999999999999965432 111 11122111 1112223322322111 11111 01
Q ss_pred CcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHH
Q 012529 216 DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 259 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~ 259 (461)
...|.|.+|+|||++. +|+|+-+|.-..+.+...+.
T Consensus 83 ~~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG~~~~a~~e~ 118 (272)
T PRK12294 83 AATKVAYAGLIIRNNE--------AAVQVGIENYAPSLANVQQS 118 (272)
T ss_pred CCceEEEeccEeccCC--------CcceeceEEECCCchhHHHH
Confidence 2459999999999873 48999999876444333333
No 116
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.012 Score=62.20 Aligned_cols=115 Identities=22% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--C-----C-CCcceeeeecCCCcccccCCc--c---c-----cCC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC--E-----G-AGEQFCVTTLIPSSREAAESP--V---D-----AIP 208 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e-----g-~~~~F~v~~~~~~~~~~~~s~--~---~-----~l~ 208 (461)
-++++..|.+.+|+-|++.|..||--|+|+++.- | | +.++|.++..+.. .+...| + . ++.
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~--~l~L~PTsEe~it~~~~~~i~ 123 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDR--PLALRPTSEEVITDMFRKWIR 123 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCc--eeeeCCCcHHHHHHHHHHHhh
Confidence 5788899999999999999999999999999321 2 2 3478888766532 222121 0 0 111
Q ss_pred CccccCcCcceeEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 209 KTKDGLIDWSQVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 209 ~~~~~~~~~~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
...+.. -++|||..+||+|--.+ ---.-||+|=|.|....|.+++....++++..
T Consensus 124 SYkdLP---l~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~ 180 (500)
T COG0442 124 SYKDLP---LKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDA 180 (500)
T ss_pred hhhhCC---cceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHH
Confidence 111111 26999999999994311 11246999999999999999998888877753
No 117
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=96.06 E-value=0.036 Score=53.73 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCEEEEEEEEeeeecC----CCeEEEEEEcCccCccEEEEEeCCCcc--hhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 29 GLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~----~~~~Fi~l~D~s~~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
=+.|.|.|.|.++... .+.+|+.|-|+||...|.|++..+... .-.+.. + .|++|.|+|++. .+..
T Consensus 66 I~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs-----r~~~ 137 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS-----RNER 137 (256)
T ss_dssp E-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE-----SSSE
T ss_pred cEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc-----cCcE
Confidence 3579999999999765 788999999999833699998865210 011333 6 999999999998 2368
Q ss_pred EEEEeEEEEecc
Q 012529 103 ELKVNKIVLVGK 114 (461)
Q Consensus 103 el~~~~i~vl~~ 114 (461)
+|.++.+.++..
T Consensus 138 ql~ve~i~~~~~ 149 (256)
T PF10451_consen 138 QLDVERIELVRD 149 (256)
T ss_dssp EEEEEEEEEETS
T ss_pred EEEEEEEEccCC
Confidence 999999987753
No 118
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=95.92 E-value=0.054 Score=44.65 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=59.0
Q ss_pred CCEEEEEEEEeeeec-CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~-~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
-+.|.|.|-|.+.+. .++-+|++|.|+. ..|+|++-+... ..+....+..|+-|.|.|.+.--+.. +.+.|.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~~--~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSRA--RRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHHH--hhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 478999999999999 5888999999987 569999976532 11220128999999999999765443 25888888
Q ss_pred EEE
Q 012529 108 KIV 110 (461)
Q Consensus 108 ~i~ 110 (461)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
No 119
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=95.47 E-value=0.071 Score=56.00 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhh--hCCcEEEecceeecC
Q 012529 148 ARVRNALAYATHKFFQ--ENGFIWISSPIITAS 178 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~ 178 (461)
..+++.|+...|++|- ..+.+||+||+|.+.
T Consensus 40 ~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~ 72 (539)
T PRK14894 40 VELKNNIIADWWRTNVYERDDMEGLDAAILMNR 72 (539)
T ss_pred HHHHHHHHHHHHHHHeeccCCEEEeeccccCCH
Confidence 4567889999999883 567889999998873
No 120
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=95.15 E-value=0.18 Score=37.58 Aligned_cols=67 Identities=18% Similarity=0.402 Sum_probs=49.1
Q ss_pred EEEEEeeeecCC---CeEEEEEEcCc-cCccEEEEEeCCCcchhhh-hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 34 VAGWVRTLRAQS---SVTFIEVNDGS-CLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 34 v~G~v~~~R~~~---~~~Fi~l~D~s-~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
+.|.|.+++... .++++.|.|++ + .+.+++-.+. +... .. +..|+.|.|+|++.... +...+.+.+
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~--~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~~ 72 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGG--TIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVES 72 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCC--EEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEeee
Confidence 678888887753 78999999999 5 4898887653 2221 24 89999999999997642 246676654
Q ss_pred E
Q 012529 109 I 109 (461)
Q Consensus 109 i 109 (461)
+
T Consensus 73 ~ 73 (75)
T cd03524 73 I 73 (75)
T ss_pred e
Confidence 4
No 121
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.039 Score=58.11 Aligned_cols=79 Identities=15% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|++|+|.|-|..++.-++-+-+.|+|++|. +++..-.. .+...--. +..||+|.|+|.|...... +.|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~-aGvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEE-AGVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhcc-CCcccCCC--CCCCceEEEEEEEeecCCc---EEEee
Confidence 78999999999999999877788899999976 88744221 11111235 9999999999999876544 44555
Q ss_pred eEEEEec
Q 012529 107 NKIVLVG 113 (461)
Q Consensus 107 ~~i~vl~ 113 (461)
.+++.|.
T Consensus 283 ~~me~L~ 289 (715)
T COG1107 283 EAMEKLT 289 (715)
T ss_pred hhhHHhh
Confidence 5555443
No 122
>PLN02734 glycyl-tRNA synthetase
Probab=94.95 E-value=0.03 Score=61.08 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHh-hhCCcEEEecceeecCC
Q 012529 148 ARVRNALAYATHKFF-QENGFIWISSPIITASD 179 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~ 179 (461)
-.+++.|+...|++| .+.+.+||+||+|++..
T Consensus 109 ~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~ 141 (684)
T PLN02734 109 CAVKSNVLAFWRQHFVLEENMLEVECPCVTPEV 141 (684)
T ss_pred HHHHHHHHHHHHHHHhccCCeeEeeccccCCHh
Confidence 456789999999999 56677899999999843
No 123
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.057 Score=55.82 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCC-CCC-------cceeeeecCCCcccccCC---ccccCCCcccc-C
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAG-------EQFCVTTLIPSSREAAES---PVDAIPKTKDG-L 214 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~-------~~F~v~~~~~~~~~~~~s---~~~~l~~~~~~-~ 214 (461)
..++--++++.+=++..++||.|+.+|.|...... |.+ +.|.+..- +.+|... |...+..-... .
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~---~~~LipTaEvpl~~l~~~Eil~~ 249 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP---DLYLIPTAEVPLTNLHRDEILDE 249 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCC---CEEEEecchhhhHHhhccccccc
Confidence 44444566666667777899999999999986553 222 33444211 1222211 11111110000 0
Q ss_pred cCc-ceeEEEecccccCCCC------C--CCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 215 IDW-SQVYTFGPTFRAENSN------T--SRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 215 ~~~-~rVfeI~~~FR~E~~~------t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
..+ -+++-.+||||.|..- + +.| +|..+|.-. |+..++.....|+|+...
T Consensus 250 ~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~Pe~S~~~~E~m~~~a 308 (429)
T COG0172 250 EDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITKPEESEEELEEMLGNA 308 (429)
T ss_pred ccCCeeeEEEChhhhcccccccccccceeeee--eeeeEEEEE-EeCcchhHHHHHHHHHHH
Confidence 011 3578889999999541 1 235 999999743 566666666666666543
No 124
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=94.64 E-value=0.25 Score=41.76 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.+..|++.|-|. |..+.=. ...||+|| .|+|.++.+.- . -.. +++.|-|.+.|.+-+.- ...||.|
T Consensus 55 ~Dda~V~l~GnIv--~qi~~D~-y~FrD~sG--eI~VeIdd~~w--~-g~t--v~P~dkV~I~GevDk~~---~~~eIdV 121 (128)
T COG3111 55 HDDAWVSLEGNIV--RQIGDDR-YVFRDASG--EINVDIDDKVW--N-GQT--VTPKDKVRIQGEVDKDW---NSVEIDV 121 (128)
T ss_pred ccCCeEEEEeeEE--EeeCCce-EEEEcCCc--cEEEEeccccc--C-Ccc--cCcccEEEEEeEEcCCC---ccceeEh
Confidence 5678999999984 4433334 37899997 49999886531 1 124 99999999999997652 2478888
Q ss_pred eEEEEe
Q 012529 107 NKIVLV 112 (461)
Q Consensus 107 ~~i~vl 112 (461)
+.|+.+
T Consensus 122 ~~I~k~ 127 (128)
T COG3111 122 KHIEKL 127 (128)
T ss_pred hheEec
Confidence 888765
No 125
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=94.63 E-value=0.045 Score=58.62 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHh-hhCCcEEEecceeecC
Q 012529 147 VARVRNALAYATHKFF-QENGFIWISSPIITAS 178 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~ 178 (461)
=..++..|+...|++| .+.+++||+||+|++.
T Consensus 36 G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 36 GAVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 3567789999999999 5788999999999983
No 126
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=94.50 E-value=0.49 Score=37.24 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=47.7
Q ss_pred EEEEEEEeeeecC--CCeEEEEEEcCccCccEEEEEeCCCcchh--hhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 32 IVVAGWVRTLRAQ--SSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 32 v~v~G~v~~~R~~--~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~--~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
|.++|-|.++|.. |+. |+.|.|.+|. +.|++-++. |+ +.+ ..|..+.+|.|+|++.. . . + .+.++
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~--~Ev~~F~~~--~~~~~~~-~~l~~d~~v~v~g~v~~-~-~--~-~l~~~ 70 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGR--ITVLLTKDK--EELFEEA-EDILPDEVIGVSGTVSK-D-G--G-LIFAD 70 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCE--EEEEEeCch--hhhhhhh-hhccCCCEEEEEEEEec-C-C--C-EEEEE
Confidence 6788999888732 556 9999999974 999887654 33 332 23889999999999954 2 2 2 56655
Q ss_pred EE
Q 012529 108 KI 109 (461)
Q Consensus 108 ~i 109 (461)
+|
T Consensus 71 ~I 72 (79)
T cd04490 71 EI 72 (79)
T ss_pred Ee
Confidence 43
No 127
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=94.42 E-value=0.83 Score=35.43 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEecc
Q 012529 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 45 ~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~ 114 (461)
+.++++.|.|++|. +.+++-.+.. ..... +..|..|.|.|++... . +..++.+.++..+..
T Consensus 18 ~~~~~~~l~D~tg~--i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~-~--~~~~l~~~~i~~l~~ 78 (83)
T cd04492 18 KPYLALTLQDKTGE--IEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEY-R--GRLQLKIQRIRLVTE 78 (83)
T ss_pred CcEEEEEEEcCCCe--EEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEe-C--CceeEEEEEEEECCc
Confidence 46899999999975 9998875433 12234 9999999999999763 2 257888888876654
No 128
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=94.37 E-value=0.16 Score=39.31 Aligned_cols=71 Identities=20% Similarity=0.368 Sum_probs=48.6
Q ss_pred EEEEEeeeec----C-CCeEEEEEEcCccCccEEEEEeCCCcchhhh-hhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 34 VAGWVRTLRA----Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 34 v~G~v~~~R~----~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
+.|.|.+++. . +.++++.|.|++|. +.+++-.+ .|... .. +..|..|.|.|++.... +..++.+.
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~--~~~~~f~~--~~~~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~ 72 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGS--IEVVVFPE--TYEKYRDL--LKEDALLLVEGKVERRD---GGLRLIAE 72 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCe--EEEEECHH--HHHHHHHH--hcCCCEEEEEEEEEecC---CceEEEee
Confidence 4566655432 2 24799999999975 88887643 23222 24 89999999999997643 25788887
Q ss_pred EEEEec
Q 012529 108 KIVLVG 113 (461)
Q Consensus 108 ~i~vl~ 113 (461)
++..+.
T Consensus 73 ~i~~~~ 78 (84)
T cd04485 73 RIEDLE 78 (84)
T ss_pred ccccHH
Confidence 765554
No 129
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=94.21 E-value=0.25 Score=51.88 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCCEEEEEEEEeeeecC-----CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~-----~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.++.|+|.|.|.++|.. ..++|+.|.|.+|. +.+++-++. |++.+ ..|..+.+|.|+|++.... +.+
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~~--y~~~~-~~l~~~~~v~v~G~v~~~~---~~~ 350 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPKS--YERIS-ELLQVDARLIIWGKVDRRD---DQV 350 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CeE
Confidence 47789999999998863 24999999999975 999887643 44433 2389999999999997632 246
Q ss_pred EEEEeEEEEec
Q 012529 103 ELKVNKIVLVG 113 (461)
Q Consensus 103 el~~~~i~vl~ 113 (461)
.+.++++.-+.
T Consensus 351 ~liv~~i~~l~ 361 (449)
T PRK07373 351 QLIVEDAEPIE 361 (449)
T ss_pred EEEEeEeecHh
Confidence 77887775443
No 130
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=94.18 E-value=0.33 Score=45.96 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhh-----CCcEEEecceeecCCCC------CCCcc--eeeeecCCCcccccCCcccc----CCCccccC
Q 012529 152 NALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQ--FCVTTLIPSSREAAESPVDA----IPKTKDGL 214 (461)
Q Consensus 152 s~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~--F~v~~~~~~~~~~~~s~~~~----l~~~~~~~ 214 (461)
...|..|+++|.. .+.+.|..|+++....| |--+| |.+...+........|...| |+++.-
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f-- 84 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGF-- 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCC--
Confidence 5667777777754 79999999999986543 22233 22221111111222343332 111100
Q ss_pred cCcceeEEEecccc-cCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhc
Q 012529 215 IDWSQVYTFGPTFR-AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274 (461)
Q Consensus 215 ~~~~rVfeI~~~FR-~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~ 274 (461)
..-+-+|+=..+-| .|+.-+..|.--.-|.|||.....-+.-++.+.+.++.|.+.+...
T Consensus 85 ~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik~t 145 (244)
T PF03590_consen 85 PPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIKET 145 (244)
T ss_dssp -TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHHHH
Confidence 01245999999999 8865579999999999999988766667777788888877776543
No 131
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=94.05 E-value=0.14 Score=54.49 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHH-hhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCC-Cc------cccc-C------
Q 012529 145 GAVARVRNALAYATHKF-FQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIP-SS------REAA-E------ 201 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~f-f~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~-~~------~~~~-~------ 201 (461)
..-.++..++.+.+++. ..+.||.||.||.|.+... + | ..+.|.|+.... .+ .++. +
T Consensus 220 p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~ 299 (517)
T PRK00960 220 PPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIE 299 (517)
T ss_pred ChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccc
Confidence 34677788888999877 4667999999999998432 1 1 124455542110 00 0000 0
Q ss_pred -------CccccCC--------Cc-cccCcCc----ceeEE-EecccccCCC--CCCCCccccccceeeeccCCHHHHHH
Q 012529 202 -------SPVDAIP--------KT-KDGLIDW----SQVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMA 258 (461)
Q Consensus 202 -------s~~~~l~--------~~-~~~~~~~----~rVfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm~ 258 (461)
.+.+.|+ .. ....... -|+|+ .|+|||+|.. ++-.=.-||+|.|.- .|++.+++.+
T Consensus 300 ~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~e 378 (517)
T PRK00960 300 KLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEE 378 (517)
T ss_pred ccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHH
Confidence 0001110 00 0000011 15899 5699999942 221123599999998 6889999999
Q ss_pred HHHHHHHH
Q 012529 259 CATAYLQY 266 (461)
Q Consensus 259 ~~e~li~~ 266 (461)
..++++.+
T Consensus 379 e~e~ll~~ 386 (517)
T PRK00960 379 IRDELLKY 386 (517)
T ss_pred HHHHHHHH
Confidence 99988844
No 132
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=94.04 E-value=0.3 Score=40.54 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=50.4
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEee
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~ 91 (461)
.++++++.. ..++.|++.|.|.+.-..-+ ..++|++| .|+|-++.+. +. -.. +++++-|.+.|.
T Consensus 23 ~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d~---Y~F~D~TG--~I~VeId~~~--w~-g~~--vt~~~~Vri~Ge 86 (103)
T PF04076_consen 23 TTVAQAKNA------KDDTPVTLEGNIVKQLGDDK---YLFRDATG--EIEVEIDDDV--WR-GQT--VTPDDKVRISGE 86 (103)
T ss_dssp --HHHHTTS-------SSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEE--GGG--ST-T------TTSEEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEecCCE---EEEECCCC--cEEEEEChhh--cC-Ccc--cCCCCEEEEEEE
Confidence 455666543 56889999999865443332 47799997 4888887642 11 124 899999999999
Q ss_pred EeecCCCCccEEEEEeEEE
Q 012529 92 VVPSQGSKQKVELKVNKIV 110 (461)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~ 110 (461)
|.+.-. ..||.|..|+
T Consensus 87 VDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 87 VDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEETT---EEEEEEEEEE
T ss_pred EeCCCC---ceEEEEEEEE
Confidence 986542 4788887764
No 133
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=93.96 E-value=0.23 Score=43.58 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=41.0
Q ss_pred CCCCCEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec
Q 012529 26 DRVGLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (461)
Q Consensus 26 ~~~~~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~ 95 (461)
...|+.|.|.|.|.++... ++-.++...+..+...++|.++.+......... |+.||-|.|+|++..-
T Consensus 64 kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 64 KYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQKVTIKGICTGY 132 (144)
T ss_dssp HHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTSEEEEEEE----
T ss_pred hcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCCEEEEEEEEEee
Confidence 4579999999999999773 555666676655556799998876533323445 9999999999998543
No 134
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=93.73 E-value=0.55 Score=40.35 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=50.7
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
..+..|++.|.|.+.-..-. ..++|++|. |+|-++.+. +....++++|-|.+.|.|-+.-. ..||.|
T Consensus 55 ~Ddt~V~L~G~Iv~~l~~d~---Y~F~D~TG~--I~VeId~~~-----w~G~~v~p~d~V~I~GeVDk~~~---~~~IdV 121 (126)
T TIGR00156 55 HDGASVTLRGNIISHIGDDR---YVFRDKSGE--INVVIPAAV-----WNGREVQPKDMVNISGSLDKKSA---PAEVDV 121 (126)
T ss_pred CCCCEEEEEEEEEEEeCCce---EEEECCCCC--EEEEECHHH-----cCCCcCCCCCEEEEEEEECCCCC---CeEEEE
Confidence 56889999999966444322 467999974 999887542 12222889999999999975422 367888
Q ss_pred eEEE
Q 012529 107 NKIV 110 (461)
Q Consensus 107 ~~i~ 110 (461)
+.|+
T Consensus 122 ~~I~ 125 (126)
T TIGR00156 122 THIQ 125 (126)
T ss_pred EEEE
Confidence 7765
No 135
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=93.65 E-value=0.38 Score=43.88 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=55.0
Q ss_pred CCCCEEEEEEEEeeeec--CCCeEEEEEEcCccCccEEEEEeCCCcchhh----hhhcCCCCCcEEEEEeeEeecCCCCc
Q 012529 27 RVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPSQGSKQ 100 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~--~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~----~~~~~l~~g~~V~v~G~~~~~~~~~~ 100 (461)
...+.|+|.|-|.+.+. .+++.++.|+|++|. |-+++..+...+-. .-- +..|++|.|+|.+..-+..
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGt--i~vva~~~tee~l~~n~~~p~--~~eGe~veVtGrv~~yrG~-- 122 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGT--ITVVASRSTEETLELNEGMPV--TVEGEIVEVTGRVEEYRGS-- 122 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCCc--EEEEEecChhHhHhhcCCCCc--cccCcEEEEEEEEEEeCCC--
Confidence 46778999999999985 489999999999974 99888776532100 113 5689999999999876654
Q ss_pred cEEEEEe
Q 012529 101 KVELKVN 107 (461)
Q Consensus 101 ~~el~~~ 107 (461)
.|+.+.
T Consensus 123 -~eVkvn 128 (204)
T COG4085 123 -SEVKVN 128 (204)
T ss_pred -ceeecc
Confidence 455553
No 136
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=93.44 E-value=0.39 Score=50.78 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHh-hhCCcEEEecceeecCCC---CC-----CCcceeeeecCC-Cc--------------------
Q 012529 147 VARVRNALAYATHKFF-QENGFIWISSPIITASDC---EG-----AGEQFCVTTLIP-SS-------------------- 196 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~-~~-------------------- 196 (461)
..++..++.+.+.+.. .+.||.||.+|.|.+... +| ..+.|.|+..+. .+
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L 301 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKL 301 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccc
Confidence 5667778888886655 556999999999998543 12 123444532110 00
Q ss_pred --------ccccCC---ccccCCCc-cccCcCc-ceeEEEe-cccccCCC--CCCCCccccccceeeeccCCHHHHHHHH
Q 012529 197 --------REAAES---PVDAIPKT-KDGLIDW-SQVYTFG-PTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACA 260 (461)
Q Consensus 197 --------~~~~~s---~~~~l~~~-~~~~~~~-~rVfeI~-~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm~~~ 260 (461)
..+... +.+.+..- .....++ -++|++. +|||.|.. +.-.=.-||+|.|.-. +++.++..+..
T Consensus 302 ~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~ 380 (520)
T TIGR00415 302 KNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIR 380 (520)
T ss_pred cccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHH
Confidence 000000 00000000 0000112 3689955 79999974 2222345999999988 88999998888
Q ss_pred HHHHHHH
Q 012529 261 TAYLQYV 267 (461)
Q Consensus 261 e~li~~i 267 (461)
++++...
T Consensus 381 e~mle~~ 387 (520)
T TIGR00415 381 DKTLELA 387 (520)
T ss_pred HHHHHHH
Confidence 8888644
No 137
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=93.35 E-value=0.86 Score=37.66 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=49.2
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|+.|++-|+|.+.+.. . +.+.+.-| ..++|.++... . +..+-+|.|.|++.. ...|.+
T Consensus 13 f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~------~~~I~~ 72 (101)
T cd04479 13 FVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSP------DLTIRV 72 (101)
T ss_pred hCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECC------CCeEEE
Confidence 789999999999998864 2 34443333 35899887642 3 788889999999954 356777
Q ss_pred eEEEEecc
Q 012529 107 NKIVLVGK 114 (461)
Q Consensus 107 ~~i~vl~~ 114 (461)
..+.-++.
T Consensus 73 ~~~~~~g~ 80 (101)
T cd04479 73 LSYIDFGD 80 (101)
T ss_pred EEEEECCC
Confidence 77666655
No 138
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=93.25 E-value=0.2 Score=54.31 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC--CC----CC-cceeeeecCCCcc---cccCCccccCCCcc----ccCcCc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC--EG----AG-EQFCVTTLIPSSR---EAAESPVDAIPKTK----DGLIDW 217 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg----~~-~~F~v~~~~~~~~---~~~~s~~~~l~~~~----~~~~~~ 217 (461)
..+.+.+|++|...||.|+-|..+++..- .. .. ++.. -.++.+. .+.+|....|-... .+...
T Consensus 362 ~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~--l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~- 438 (552)
T PRK09616 362 EKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVE--VLNPISEDYTVVRTSLLPSLLEFLSNNKHREYP- 438 (552)
T ss_pred HHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEE--EcCCCccchheEeccchHHHHHHHHhccCCCCC-
Confidence 45677889999999999999999987521 10 00 1121 1222111 11122111110000 01111
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
-|+||||+||+.+.. +..|..|++++-+-++.. |+.++...+|.++..
T Consensus 439 ~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 439 QKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred eeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 379999999998753 345778999998877763 788888888887753
No 139
>PRK10053 hypothetical protein; Provisional
Probab=93.10 E-value=0.68 Score=40.05 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
..+..|++.|.|.+-=..- - ...+|++|. |+|-++.+. +...-++++|-|.+.|.+-+.-. ..||.|
T Consensus 59 ~Dd~~V~L~G~Iv~~lg~d--~-Y~F~D~tG~--I~VeID~~~-----w~G~~v~p~~kV~I~GevDk~~~---~~~IdV 125 (130)
T PRK10053 59 HDGATVSLRGNLIDHKGDD--R-YVFRDKSGE--INVIIPAAV-----FDGREVQPDQMININGSLDKKSA---PPVVRV 125 (130)
T ss_pred cCCCeEEEEEEEEEEeCCc--e-EEEECCCCc--EEEEeCHHH-----cCCCcCCCCCEEEEEEEECCCCC---CeEEEE
Confidence 5678999999985433222 2 467999974 999887542 22223999999999999976522 478888
Q ss_pred eEEE
Q 012529 107 NKIV 110 (461)
Q Consensus 107 ~~i~ 110 (461)
+.|+
T Consensus 126 ~~i~ 129 (130)
T PRK10053 126 THLQ 129 (130)
T ss_pred EEEe
Confidence 8775
No 140
>PRK15491 replication factor A; Provisional
Probab=92.74 E-value=0.66 Score=47.65 Aligned_cols=92 Identities=22% Similarity=0.267 Sum_probs=65.6
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeee-------ec---CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL-------RA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~-------R~---~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (461)
+.|++|.+ ....|+|.|+|.++ |. -|++.=+.|-|.||. |++++..+..+ .+..+.|.
T Consensus 58 ~kI~dL~~--------~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~--ir~tlW~~~a~--~~~~~~le 125 (374)
T PRK15491 58 TKIADINE--------SSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGS--IRLTLWDDLAD--LIKTGDIE 125 (374)
T ss_pred ccHHHCCC--------CCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCe--EEEEEECchhh--hhccCCcC
Confidence 45666654 23679999999987 22 257777899999974 99999876532 12213389
Q ss_pred CCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCC
Q 012529 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (461)
Q Consensus 82 ~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~ 118 (461)
.|+++.|.|.+.+.- +.+||.+.+.+.+.+|+..
T Consensus 126 ~G~v~~I~~~~~~~y---~g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 126 VGKSLNISGYAKEGY---SGIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCEEEEeeeeccCc---ccEEEEeCCCceeeecccc
Confidence 999999998754433 2489999988888888654
No 141
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.50 E-value=0.28 Score=49.00 Aligned_cols=120 Identities=23% Similarity=0.217 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-------CC-CCCcceeeeecCCCcccccCCcccc--------CC-C
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-------CE-GAGEQFCVTTLIPSSREAAESPVDA--------IP-K 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-------~e-g~~~~F~v~~~~~~~~~~~~s~~~~--------l~-~ 209 (461)
-+|.-.++++.++.=|++-|=.+|.-|+|++.. .+ -+.+.|.+-..+.....++...+.. .+ .
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~ls 130 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLS 130 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCccc
Confidence 466678999999999999999999999999832 12 2457787644332222222111111 11 0
Q ss_pred ccccCcCcceeEEEecccccCCC-CC--CCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDWSQVYTFGPTFRAENS-NT--SRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYIL 272 (461)
Q Consensus 210 ~~~~~~~~~rVfeI~~~FR~E~~-~t--~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~ 272 (461)
..|.. =+|||||+=||+|-- +. -| --||.|=|+|. |. |-++.|+ +-+++..+..++.
T Consensus 131 ykqlP---i~vYQigrKfRDElrpRfGLlR-gREFlMKDmYs-Fd~~~etA~q-Ty~~v~~aY~~iF 191 (457)
T KOG2324|consen 131 YKQLP---IRVYQIGRKFRDELRPRFGLLR-GREFLMKDMYS-FDSDEETAQQ-TYQLVDQAYDRIF 191 (457)
T ss_pred cccCc---EEeeeechhhhhccCccccchh-hHHHHHhhhhc-ccCCHHHHHH-HHHHHHHHHHHHH
Confidence 11211 279999999999932 10 11 24999999996 54 4555543 4444444444443
No 142
>PRK14699 replication factor A; Provisional
Probab=92.22 E-value=0.94 Score=48.09 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=61.9
Q ss_pred CCEEEEEEEEeeee-------cC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCC
Q 012529 29 GLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (461)
Q Consensus 29 ~~~v~v~G~v~~~R-------~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~ 98 (461)
++.|++.|+|.++- .+ |++.=+.|-|.||. |.+++..+..+. +..+.|..||+|.|.|.++.-.
T Consensus 67 ~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~--ir~tlW~~~a~~--~~~g~l~~GDvv~I~~~~r~~~-- 140 (484)
T PRK14699 67 SGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGK--IKLTLWDNMADL--IKAGKIKAGQTLQISGYAKQGY-- 140 (484)
T ss_pred CceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCe--EEEEEecCccch--hhhcCCCCCCEEEEcceeccCC--
Confidence 46799999999973 22 56777789999975 999998765321 2322399999999999643322
Q ss_pred CccEEEEEeEEEEeccCCCCCCCC
Q 012529 99 KQKVELKVNKIVLVGKSDPSYPIQ 122 (461)
Q Consensus 99 ~~~~el~~~~i~vl~~~~~~~Pl~ 122 (461)
++.||.+.+.+++.+++..++.+
T Consensus 141 -~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 141 -SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred -CCceEEeCCCceeeccCcccccC
Confidence 34799988777888765545554
No 143
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=92.00 E-value=0.91 Score=41.94 Aligned_cols=64 Identities=14% Similarity=0.275 Sum_probs=49.4
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhhhhhcCCCCCcEEEEEeeEeecCCC
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS 98 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~v~G~~~~~~~~ 98 (461)
.|.+.|||.++..+..-+|+.|-||+|. |-|-..+.... .++.+. +.-|-+|.|.|.++.-.++
T Consensus 68 ~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~~~~~yvkV~G~lk~F~GK 132 (258)
T COG5235 68 NVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--LEEQNYVKVNGSLKTFNGK 132 (258)
T ss_pred eEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--cccccEEEEecceeeeCCe
Confidence 4789999999999977788999999985 88877765432 233455 7788899999999765433
No 144
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=91.96 E-value=0.79 Score=38.37 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=38.2
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~ 96 (461)
+.|+.|++-|+|.+....|+.+-+.-.|+. .++|.+.... . +..+.+|.|.|++....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCC
Confidence 689999999999999977765544444663 5788776542 2 66789999999996643
No 145
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=91.96 E-value=0.7 Score=54.09 Aligned_cols=80 Identities=14% Similarity=0.309 Sum_probs=59.7
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~----~-~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.|..|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++. |+..+ ..|..|.+|.|+|++.....+ .+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~~--~~~~~-~~l~~~~~~~v~g~v~~~~~~--~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPKV--YEKYR-SLLNEDNIVLIKGRVSLREDE--EP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecCCC--ce
Confidence 46789999999998763 2 4999999999975 999887643 44432 238999999999999754322 47
Q ss_pred EEEEeEEEEecc
Q 012529 103 ELKVNKIVLVGK 114 (461)
Q Consensus 103 el~~~~i~vl~~ 114 (461)
.+.++++.-+..
T Consensus 1063 ~~~~~~~~~l~~ 1074 (1151)
T PRK06826 1063 KLICEEIEPLVI 1074 (1151)
T ss_pred EEEEeeeecHhh
Confidence 788887765543
No 146
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=91.91 E-value=0.68 Score=54.21 Aligned_cols=78 Identities=9% Similarity=0.213 Sum_probs=58.8
Q ss_pred CCCEEEEEEEEeeeecC---C--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ---S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~---~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.|.+|+|.|.|.++|.. + .++|+.|.|.+|. +.+++-++. |.+.+ ..|..|.+|.|+|++.... +.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~~--y~~~~-~~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPKS--YERLS-DHLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CeE
Confidence 46789999999998763 2 4999999999975 999887643 44433 2389999999999997642 246
Q ss_pred EEEEeEEEEec
Q 012529 103 ELKVNKIVLVG 113 (461)
Q Consensus 103 el~~~~i~vl~ 113 (461)
.+.++++.-+.
T Consensus 1071 ~~~~~~i~~l~ 1081 (1170)
T PRK07374 1071 QLIIDDCREID 1081 (1170)
T ss_pred EEEEeeeecHh
Confidence 77887776544
No 147
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=91.83 E-value=0.71 Score=53.57 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeecC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEE
Q 012529 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el 104 (461)
.|..|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++. |++.+ ..|..|..+.|+|++.... +.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~~--~~~~~-~~l~~~~~~~v~g~v~~~~---~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPGL--WERQR-REALGARLLLVRGRVQNAE---GVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CeEEE
Confidence 46789999999987763 34999999999975 999887653 44433 2389999999999997642 24778
Q ss_pred EEeEEEEecc
Q 012529 105 KVNKIVLVGK 114 (461)
Q Consensus 105 ~~~~i~vl~~ 114 (461)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8888865544
No 148
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=89.93 E-value=1.3 Score=51.54 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=59.1
Q ss_pred CCCEEEEEEEEeeeecC-----CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~-----~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.|+.|+|.|.|.++|.. +.++|+.|.|.+|. +.+++-++. |++.+ ..|..|.+|.|+|++.... +..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~~--y~~~~-~~l~~~~~~~v~G~v~~~~---~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPET--YIHFS-DKLQEGAIVLVDGTIELRN---HKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CcE
Confidence 46789999999998652 35999999999975 999887643 44432 2389999999999997642 246
Q ss_pred EEEEeEEEEecc
Q 012529 103 ELKVNKIVLVGK 114 (461)
Q Consensus 103 el~~~~i~vl~~ 114 (461)
.+.++++.-+..
T Consensus 1014 ~~~~~~i~~l~~ 1025 (1107)
T PRK06920 1014 QWIVNGLYPLEE 1025 (1107)
T ss_pred EEEEeecccHHH
Confidence 778877755543
No 149
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=89.89 E-value=1 Score=52.82 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=60.3
Q ss_pred CCCEEEEEEEEeeeecC-----CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~-----~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.|..|.+.|.|.++|.. +.++|+.|.|.+|. +.+++-++. |++.+. .|..|++|.|+|++.... +.+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~~--ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSEA--LEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 47789999999998773 24999999999975 999887643 443322 389999999999997632 257
Q ss_pred EEEEeEEEEeccC
Q 012529 103 ELKVNKIVLVGKS 115 (461)
Q Consensus 103 el~~~~i~vl~~~ 115 (461)
.|.++++.-+..+
T Consensus 1048 qlii~~I~~L~~~ 1060 (1135)
T PRK05673 1048 RLTAREVMDLEEA 1060 (1135)
T ss_pred EEEEeecccHHHH
Confidence 7888877665543
No 150
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.71 E-value=0.17 Score=50.93 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=27.3
Q ss_pred CcceeEEEecccccCCCCCCCCccccccceeeeccC
Q 012529 216 DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 251 (461)
+.+.--..|-|||-..++ ++|.|=|.++|--..+.
T Consensus 150 ~~~~flv~~DVyrrdeid-sthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 150 GLDGFLVTGDVYRRDEID-STHYPVFHQMEGVRLWS 184 (436)
T ss_pred cccccceeeeeeeecccc-ccccceeccccceeEEe
Confidence 345566788999988884 89999999999765543
No 151
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.65 E-value=0.73 Score=49.89 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CCCC-----cceeeeecCCCcccccCCccccCCC---ccccCcC
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPK---TKDGLID 216 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~~~~~~~~~s~~~~l~~---~~~~~~~ 216 (461)
..+|+.+.+.+|.-..+.||.||.||.|....- .|.- +.|.+..-+ ......|....-. ..+..-.
T Consensus 220 ~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~---~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 220 ATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDD---REYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred ccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCC---hhheeeeccCHhHHHHHhcCCcc
Confidence 468899999999999999999999999987432 1221 223221100 0011111111000 0011001
Q ss_pred c----ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 217 W----SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 217 ~----~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
+ -|++|+|.|||.|.| +.-| +=+|||=|.-. |+..+++.+.+.+.+..+..-.
T Consensus 297 YR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVY 357 (589)
T ss_pred eeccchhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHH
Confidence 1 278999999999988 5555 47899988765 6778888888888777766544
No 152
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=89.33 E-value=4.3 Score=35.05 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=55.6
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeeec------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (461)
.+|+||.+. ...|.+.|.|.++.. . +.+.-+.|.|.||. |.+.+..+. +.. |..
T Consensus 5 ~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~--I~~tlW~~~-----a~~--l~~ 67 (129)
T PRK06461 5 TKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGR--VKLTLWGEQ-----AGS--LKE 67 (129)
T ss_pred eEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCE--EEEEEeCCc-----ccc--CCC
Confidence 457777642 256888888885421 1 23666788999974 999887653 224 899
Q ss_pred CcEEEEE-eeEeecCCCCccEEEEEeE---EEEecc
Q 012529 83 GASIWIQ-GNVVPSQGSKQKVELKVNK---IVLVGK 114 (461)
Q Consensus 83 g~~V~v~-G~~~~~~~~~~~~el~~~~---i~vl~~ 114 (461)
||+|.|. |.+..- .+ .++|.+.+ +..+..
T Consensus 68 GdvV~I~na~v~~f-~G--~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 68 GEVVEIENAWTTLY-RG--KVQLNVGKYGSISESDD 100 (129)
T ss_pred CCEEEEECcEEeee-CC--EEEEEECCCEEEEECCc
Confidence 9999999 555443 22 58888874 555554
No 153
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.20 E-value=0.88 Score=46.68 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceee------cCCCCCCCcceeeeec-CCCcccc-cCCccccCC--CccccC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIIT------ASDCEGAGEQFCVTTL-IPSSREA-AESPVDAIP--KTKDGL 214 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~------~~~~eg~~~~F~v~~~-~~~~~~~-~~s~~~~l~--~~~~~~ 214 (461)
-+-+.+|..+.+.+.+-|..+|..+|+||++. .-.+|... +-|- ..+...+ +..+.+..| ++.+|.
T Consensus 71 p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdsk----LiYdlkDQGGEl~SLRYDLTVPfARylAmN 146 (518)
T KOG1936|consen 71 PEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSK----LIYDLKDQGGELCSLRYDLTVPFARYLAMN 146 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccc----eeEehhhcCCcEEEeecccccHHHHHHHHc
Confidence 34678899999999999999999999999865 33344331 2221 1111111 111111111 111111
Q ss_pred -cCcceeEEEecccccCCC-CCCCCccccccceeeeccCCHHHHHH
Q 012529 215 -IDWSQVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMA 258 (461)
Q Consensus 215 -~~~~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~d~~dlm~ 258 (461)
.--=+-|+||++||-+.. -|.=-.=||+|+|+-.|. +++.|+.
T Consensus 147 ki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG-~~d~M~p 191 (518)
T KOG1936|consen 147 KITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG-QFDPMIP 191 (518)
T ss_pred ccccceeeeEEEEEeccCchhhchhhhhhhccCccccc-cCCCCCc
Confidence 001246999999997753 122233599999999885 3333433
No 154
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=88.84 E-value=0.43 Score=44.35 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhCCcEEEecceeecC
Q 012529 153 ALAYATHKFFQENGFIWISSPIITAS 178 (461)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~ 178 (461)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 45677899999999999999999875
No 155
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=87.96 E-value=12 Score=32.33 Aligned_cols=84 Identities=19% Similarity=0.353 Sum_probs=50.7
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEe--eeec---CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEE
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~--~~R~---~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~ 87 (461)
+..++.+.. ...++.|+|.|+|. ++.. ...+.| .|.|+. ..+.|+.+...++ . .+.|..|.
T Consensus 38 t~se~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~--~~i~V~Y~G~~Pd-----~--F~eg~~VV 103 (131)
T PF03100_consen 38 TPSELAAEP----QKVGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGG--KEIPVVYTGPLPD-----L--FREGQGVV 103 (131)
T ss_dssp -TTTTTTTS----T-TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS---EEEEEEES--CT-----T----TTSEEE
T ss_pred CHHHHhhcc----ccCCceEEEeeEEccCCEEEcCCCCEEEE-EEEECC--cEEEEEECCCCCc-----c--ccCCCeEE
Confidence 345555431 24789999999998 5544 356776 667885 4699999876542 2 67799999
Q ss_pred EEeeEeecCCCCccEEEEEeEEEEeccCCCC
Q 012529 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (461)
Q Consensus 88 v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~ 118 (461)
|+|++.. . -.++++ +||.||+..
T Consensus 104 v~G~~~~--~----g~F~A~--~lL~Kcpsk 126 (131)
T PF03100_consen 104 VEGRLGE--D----GVFEAT--ELLAKCPSK 126 (131)
T ss_dssp EEEEECC--T----SEEEEE--EEEETS---
T ss_pred EEEEECC--C----CEEEEE--EEEeCCCCC
Confidence 9999922 1 134554 578888643
No 156
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=87.47 E-value=3.4 Score=34.15 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=49.0
Q ss_pred CEEEEEEEEee---eec------CCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEe-eEeecCC-
Q 012529 30 LMIVVAGWVRT---LRA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQG-NVVPSQG- 97 (461)
Q Consensus 30 ~~v~v~G~v~~---~R~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G-~~~~~~~- 97 (461)
..++|+|||.+ +|. .|++.-++|.|..| +.|++.+-.+.. .|. .. |..|+++.++| .|.+..+
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~~~f~--~~--l~eG~vy~i~~~~V~~a~~~ 84 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAVDKFY--DL--LEVGKVYYISKGSVKVANKK 84 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHHHHhh--cc--cccccEEEEeccEEeecccc
Confidence 45899999975 332 26788899999954 469999987542 232 23 89999999985 5555422
Q ss_pred ---CCccEEEEEe
Q 012529 98 ---SKQKVELKVN 107 (461)
Q Consensus 98 ---~~~~~el~~~ 107 (461)
....+||...
T Consensus 85 y~~~~~~yeI~f~ 97 (104)
T cd04474 85 FNTLKNDYEITFN 97 (104)
T ss_pred CCCCCCcEEEEEC
Confidence 1245677654
No 157
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=87.31 E-value=1 Score=46.29 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---C-C---CCcceeeeecCCCcccccCCccccCCC--cc--ccCc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G---AGEQFCVTTLIPSSREAAESPVDAIPK--TK--DGLI 215 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g---~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~--~~~~ 215 (461)
-.+.+..|-..+++.|...||-.|+||+|...++ + | -.+.|.+..... ..+...|.+.+|- .. .+..
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g--~~l~LRpD~T~pVaR~~~~~~~~ 93 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETG--GRLGLRPDFTIPVARIHATLLAG 93 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCC--CeEEecccccHHHHHHHHHhcCC
Confidence 3455678888899999999999999999998654 2 1 135777643221 2233333333221 00 0111
Q ss_pred CcceeEEEecccccCCCCCCCCccccccceeeeccC
Q 012529 216 DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 251 (461)
.-.|++..|++||+......+ ..||+|.=+|.=+.
T Consensus 94 ~P~Rl~Y~G~Vfr~~~~~~g~-~~Ef~QaGiEllG~ 128 (390)
T COG3705 94 TPLRLSYAGKVFRAREGRHGR-RAEFLQAGIELLGD 128 (390)
T ss_pred CCceeeecchhhhcchhccCc-ccchhhhhhHHhCC
Confidence 357999999999987332222 35999999887443
No 158
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=87.19 E-value=0.35 Score=48.59 Aligned_cols=39 Identities=33% Similarity=0.684 Sum_probs=31.9
Q ss_pred HHHHhccCCC-CCccccccHHHHHHHHcCCCCccccccCCC
Q 012529 415 YLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPR 454 (461)
Q Consensus 415 yl~a~~~G~p-P~gG~giGidRLvm~l~g~~~Irdv~~FPr 454 (461)
-+.+-+||.| |---.|+|+|||.|.|.|.++||.. .+|.
T Consensus 313 P~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 313 PIALAEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred hHHHHHcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 3455678887 8889999999999999999999975 3443
No 159
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=87.01 E-value=2.3 Score=49.24 Aligned_cols=74 Identities=14% Similarity=0.326 Sum_probs=54.7
Q ss_pred CCEEEEEEEEeeeecC------CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 29 GLMIVVAGWVRTLRAQ------SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~------~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
+..+.+.|+|.++|.. +.++|+.|.|.+|. +.+++-++. |.+.+ ..|..|.+|.|+|++.... +..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~~--y~~~~-~~l~~~~~~~v~G~v~~~~---~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPET--YRQYK-DELKEGKFYYLKGKIQERD---GRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---Cee
Confidence 5568899999886642 24999999999975 999987653 44432 2389999999999997642 246
Q ss_pred EEEEeEEE
Q 012529 103 ELKVNKIV 110 (461)
Q Consensus 103 el~~~~i~ 110 (461)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 77777764
No 160
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=86.99 E-value=7.5 Score=29.01 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=41.2
Q ss_pred EEEEEeeeec----CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEE
Q 012529 34 VAGWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 34 v~G~v~~~R~----~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i 109 (461)
+.|.|.+.+. .+++.-+.+.|+++. +.+++-... .+. .+. +..|+.+.|.|++..... .++|.-.++
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~--i~~~~F~~~-~~~-~~~--~~~G~~~~v~Gkv~~~~~---~~qi~~P~~ 72 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGT--LTLVFFNFQ-PYL-KKQ--LPPGTRVRVSGKVKRFRG---GLQIVHPEY 72 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCE--EEEEEECCC-HHH-Hhc--CCCCCEEEEEEEEeecCC---eeEEeCCcE
Confidence 4555555432 134666778999864 888775421 121 244 999999999999976532 355544333
No 161
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=86.60 E-value=14 Score=29.11 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=45.8
Q ss_pred EEEEEEEeee--ec--CCC-eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCC-CCcEEEEEeeEeecCCCCccEEEE
Q 012529 32 IVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (461)
Q Consensus 32 v~v~G~v~~~--R~--~~~-~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~v~G~~~~~~~~~~~~el~ 105 (461)
|+|.|-|-.+ |. .|+ +.-+.|.|.+.. |-|..=.+ ...+.+.. |. .|+.|.|+|.+.-..-. +++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f~-~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTFS-KELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccCC-CceEEE
Confidence 6788887654 33 233 445789999854 66543322 11223445 88 99999999999765432 367777
Q ss_pred EeEEE
Q 012529 106 VNKIV 110 (461)
Q Consensus 106 ~~~i~ 110 (461)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 76654
No 162
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=86.41 E-value=5.2 Score=40.09 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=53.5
Q ss_pred CCEEEEEEEEeeeec----CCC-eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEE
Q 012529 29 GLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~----~~~-~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~e 103 (461)
|++|..-.-|+++.. .|+ ...+.|.|.||. |...+....... ... +..|++|.|+|++..-+.+ +.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~--I~ak~W~~~~~~--~~~--~~~g~vv~v~G~v~~y~g~---~Q 81 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGD--IEAKLWDVSPED--EAT--YVPETIVHVKGDIINYRGR---KQ 81 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcE--EEEEeCCCChhh--Hhh--cCCCCEEEEEEEEEEECCc---ce
Confidence 455554445555432 233 556678899975 999887654321 334 8999999999999876443 66
Q ss_pred EEEeEEEEeccCC
Q 012529 104 LKVNKIVLVGKSD 116 (461)
Q Consensus 104 l~~~~i~vl~~~~ 116 (461)
+.+..+.++.+..
T Consensus 82 l~i~~i~~~~~~e 94 (314)
T PRK13480 82 LKVNQIRLATEED 94 (314)
T ss_pred EEEEEeEECCCCC
Confidence 8888998887753
No 163
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=86.12 E-value=12 Score=33.55 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=54.2
Q ss_pred CCCCEEEEEEEEe--eeecCC---CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 27 RVGLMIVVAGWVR--TLRAQS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~--~~R~~~---~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
..|+.++|.|.|. |+...+ .+.| .|.|+.. +|.|....-.++ . .+-|.-|.|+|++... +
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilPD-----l--FrEG~gVVveG~~~~~--g--- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEG--SVTVSYEGILPD-----L--FREGQGVVVQGTLEKG--N--- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCc--EEEEEEeccCCc-----c--ccCCCeEEEEEEECCC--C---
Confidence 4689999999999 776652 3565 7889874 588888765542 1 6779999999999442 1
Q ss_pred EEEEEeEEEEeccCCCCC
Q 012529 102 VELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 102 ~el~~~~i~vl~~~~~~~ 119 (461)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~evLAKhdekY 134 (159)
T PRK13150 120 -HVLA--HEVLAKHDENY 134 (159)
T ss_pred -EEEE--eEEEeCCCCCC
Confidence 2344 46899998764
No 164
>PRK14699 replication factor A; Provisional
Probab=85.81 E-value=6.8 Score=41.69 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=58.2
Q ss_pred CEEEEEEEEeeeec-------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCC
Q 012529 30 LMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (461)
Q Consensus 30 ~~v~v~G~v~~~R~-------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~ 99 (461)
..|+|.|+|.++-. . |++.=+.|-|.||. |.+++..+...+ ... |..||+|.+.+-..+.....
T Consensus 177 ~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~igDeTG~--ir~tlW~~~a~~--~~~--l~~Gd~v~I~~a~vr~~~~~ 250 (484)
T PRK14699 177 GDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLGDETGT--LRVTLWDDKTDF--LNQ--IEYGDTVELINAYARENAFT 250 (484)
T ss_pred CceEEEEEEEeccCceEEecCCCCceEEEEEEEEcCCce--EEEEEECccccc--ccc--cCCCCEEEEecceEeecccC
Confidence 45999999987532 1 24555689999974 999998764322 335 89999999876543332222
Q ss_pred ccEEEEEeEEEEeccCCCC
Q 012529 100 QKVELKVNKIVLVGKSDPS 118 (461)
Q Consensus 100 ~~~el~~~~i~vl~~~~~~ 118 (461)
+.+||.+.+.+++.++...
T Consensus 251 ~~~el~~~~~s~i~~~~~~ 269 (484)
T PRK14699 251 QKVELQVGNRSIIRKSEKK 269 (484)
T ss_pred CceEEEecCceEeeccccc
Confidence 4799999988888887543
No 165
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=85.07 E-value=7.3 Score=30.42 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=38.9
Q ss_pred CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE-eeEeecCCCCccEEEEEeEE
Q 012529 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 45 ~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~-G~~~~~~~~~~~~el~~~~i 109 (461)
+++.=+.|.|.|| .|.+++-.... ... +..|++|.++ |.+..-. +.++|.+.+.
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~ 76 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKN 76 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCc
Confidence 5666688899997 49998876542 234 8999999999 7775543 3577777553
No 166
>PRK12366 replication factor A; Reviewed
Probab=84.78 E-value=5.9 Score=43.74 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCEEEEEEEEeeee---c------CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec---
Q 012529 28 VGLMIVVAGWVRTLR---A------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS--- 95 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R---~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~--- 95 (461)
.|..++|.|||.++- . .|++.-+.|.|.+| .|++++-.+... .+.. |..|+++.+.+-..+.
T Consensus 290 ~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~d--~~~~--l~~G~vy~is~~~vk~y~~ 363 (637)
T PRK12366 290 DGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKAK--ILEN--LKEGDAVKIENCKVRTYYD 363 (637)
T ss_pred CCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchhh--hhcc--cCCCCEEEEecCEEeeccc
Confidence 567899999999863 2 37888899999997 499999876532 1224 7789999998644441
Q ss_pred CCCCccEEEEEeEEEEecc
Q 012529 96 QGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 96 ~~~~~~~el~~~~i~vl~~ 114 (461)
..+...+||.+..-..+.+
T Consensus 364 ~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 364 NEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred cCCCcCEEEEcCCceEEEe
Confidence 1233468998866544433
No 167
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=84.68 E-value=2 Score=49.69 Aligned_cols=118 Identities=11% Similarity=0.094 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeec-CCCC-CCCcceeeeecCCCcccccCCccccCC--Ccccc-CcCcce
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITA-SDCE-GAGEQFCVTTLIPSSREAAESPVDAIP--KTKDG-LIDWSQ 219 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~-~~~e-g~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~~-~~~~~r 219 (461)
-..-.+|+.+...+-+-|.++|++|++||-+.. ++|- +..++..+-..+.....+.- -+++| +..+. ....-|
T Consensus 929 ~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~--DLr~pfar~vs~N~~~~~K 1006 (1351)
T KOG1035|consen 929 EINNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPY--DLRLPFARYVSRNSVLSFK 1006 (1351)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeec--cccchHHHHhhhchHHHHH
Confidence 334567888999999999999999999996664 3332 23333333221110000100 01111 11111 111346
Q ss_pred eEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHHHHH
Q 012529 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYV 267 (461)
Q Consensus 220 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d----~~dlm~~~e~li~~i 267 (461)
-|+|++|||-+.. + |--|++.+++-....+ --+++.++-+++..+
T Consensus 1007 ry~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~ 1055 (1351)
T KOG1035|consen 1007 RYCISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEI 1055 (1351)
T ss_pred Hhhhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHH
Confidence 7999999999873 3 9999999999865543 245666666666553
No 168
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=84.19 E-value=6.8 Score=41.16 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=59.7
Q ss_pred CCEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCcchhhh-hhcCCCCCcEEEEEeeEee-cCCCCccEEEE
Q 012529 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVP-SQGSKQKVELK 105 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~v~G~~~~-~~~~~~~~el~ 105 (461)
-..|.|.|=|.+.+.+ ++-+|+.|.|.. ..|-||+-+.... .+ -. +..|+-|.|.|.+.- .+.+ .+.|.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~--a~i~~~~~~~~~~--~~~~~--~~~G~~v~v~g~~~~y~~~g--~~ql~ 94 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEI--AQIRCVMFKGSAR--RLKFK--PEEGMKVLVRGKVSLYEPRG--DYQLI 94 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCC--cEEEEEEEcChhh--cCCCC--CCCCCEEEEEEEEEEECCCC--CEEEE
Confidence 4679999999999876 667999999997 4599999875421 11 13 889999999999975 3443 69999
Q ss_pred EeEEEEec
Q 012529 106 VNKIVLVG 113 (461)
Q Consensus 106 ~~~i~vl~ 113 (461)
|++|...+
T Consensus 95 v~~i~~~g 102 (438)
T PRK00286 95 VEEIEPAG 102 (438)
T ss_pred EEEeeeCC
Confidence 99998755
No 169
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=83.89 E-value=8 Score=37.67 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=53.2
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
..|.+.|||.++-....-++.+|-|++|. |=|....... .-.+... |..|.+|.|.|.++...++ ..|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~Gk---~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQGK---KSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCCc---eeEEEEe
Confidence 35889999999998866678899999975 5555544321 1112335 9999999999999765433 4566666
Q ss_pred EEEe
Q 012529 109 IVLV 112 (461)
Q Consensus 109 i~vl 112 (461)
|.-+
T Consensus 142 I~pv 145 (265)
T KOG3108|consen 142 IRPV 145 (265)
T ss_pred eeee
Confidence 5433
No 170
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=83.87 E-value=5.3 Score=41.58 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
-..|.|.|-|.+++.. .+-.|+.|.|... .|+|++-+.....-. -. +..|+-|.|+|++.-=+.+ +.+.|.++
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A--~i~c~mf~~~~~~l~-f~--p~eG~~V~v~G~is~Y~~r-G~YQi~~~ 96 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERA--QIRCVMFKGNNRRLK-FR--PEEGMQVLVRGKISLYEPR-GDYQIVAE 96 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCc--eEEEEEEcCcccccC-CC--ccCCCEEEEEEEEEEEcCC-CceEEEEe
Confidence 3569999999999965 3389999999984 599988775421101 13 8899999999999654332 26889998
Q ss_pred EEEEec
Q 012529 108 KIVLVG 113 (461)
Q Consensus 108 ~i~vl~ 113 (461)
+++--|
T Consensus 97 ~~~p~G 102 (440)
T COG1570 97 SMEPAG 102 (440)
T ss_pred cCCcCC
Confidence 887533
No 171
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.70 E-value=8.2 Score=43.04 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred CCCCEEEEEEEEeeeecC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEE
Q 012529 27 RVGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~e 103 (461)
..|+.|+|.|.|.+.+.. +++.-+.+.|++|. +++++=.-...|- .+. ++.|+.+.|.|++..... .++
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~--i~l~~F~~n~~~~-~~~--l~~G~~~~v~Gkv~~~~~---~~q 128 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGN--LTLRFFNFNQPYL-KKQ--LKVGKRVAVYGKVKRGKY---GLE 128 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeE--EEEEEEccCcHHH-Hhh--CCCCCEEEEEEEEEecCC---eEE
Confidence 458899999999886433 35677888999974 8887752111221 244 999999999999976321 355
Q ss_pred EEEeEEEEe
Q 012529 104 LKVNKIVLV 112 (461)
Q Consensus 104 l~~~~i~vl 112 (461)
+.-.++.++
T Consensus 129 m~~P~~~~~ 137 (681)
T PRK10917 129 MVHPEYEVL 137 (681)
T ss_pred EEcCEEEec
Confidence 555555443
No 172
>PRK07217 replication factor A; Reviewed
Probab=82.95 E-value=16 Score=36.32 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=65.6
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeee--ecCCCeEE-EEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~--R~~~~~~F-i~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
.|+||.. .++-|+|.|+|.++ +.+..++. -.|-|.||. |..++..+.. ... |..|++|.+.
T Consensus 74 kI~Di~~--------~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG~--IkfT~W~~s~----~~~--leeGd~~rI~ 137 (311)
T PRK07217 74 NIADIDE--------PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETGT--IKFTKWAKSD----LPE--LEEGKSYLLK 137 (311)
T ss_pred eeeecCC--------CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCce--EEEEEccCCC----CCc--ccCCCEEEEE
Confidence 4666654 46779999999987 33566777 457899975 8888876421 223 8999999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCC
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl 121 (461)
+-.+..-.+ ..+|.+.+.+.+...+.+.++
T Consensus 138 na~v~ey~G--~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 138 NVVTDEYQG--RFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred eEEEeeECC--EEEEEeCCceEEEeCCCCccc
Confidence 887765544 689999888777776655554
No 173
>PRK07211 replication factor A; Reviewed
Probab=82.81 E-value=8 Score=41.00 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred CEEEEEEEEeeeec-----------CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCC
Q 012529 30 LMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (461)
Q Consensus 30 ~~v~v~G~v~~~R~-----------~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~ 98 (461)
..|+|.|||.++-. .|++.=++|-|.||. |++++..+...- .... |..|+++.|.|.+++.
T Consensus 64 ~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG~--Ir~TlW~d~ad~-~~~~--Le~GdV~~I~~~~~~~--- 135 (485)
T PRK07211 64 DEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETGS--VRVAFWDEQAVA-AEEE--LEVGQVLRIKGRPKDG--- 135 (485)
T ss_pred CceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCCe--EEEEEechHhHh-hhcc--cCCCCEEEEeceEecc---
Confidence 56999999988633 368899999999974 999998764211 1224 9999999999977532
Q ss_pred CccEEEEEeEE
Q 012529 99 KQKVELKVNKI 109 (461)
Q Consensus 99 ~~~~el~~~~i 109 (461)
-+.+||.+..+
T Consensus 136 ys~~El~i~~v 146 (485)
T PRK07211 136 YNGLEVSVDKV 146 (485)
T ss_pred ccceEEEEeeE
Confidence 23578888854
No 174
>PRK15491 replication factor A; Provisional
Probab=81.92 E-value=11 Score=38.83 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=57.3
Q ss_pred CEEEEEEEEeeeec-------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEe-eEeecCCC
Q 012529 30 LMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQGS 98 (461)
Q Consensus 30 ~~v~v~G~v~~~R~-------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G-~~~~~~~~ 98 (461)
..|.|.|+|.++-. . +++.=+.|.|.||. |.+++..+...+ +.. |..|++|.+.+ .++.+. -
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~--Ir~t~W~~~a~~--~~~--l~~Gd~V~i~~~~~r~~~-~ 249 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGK--IRVTLWDGKTDL--ADK--LENGDSVEIINGYARTNN-Y 249 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCe--EEEEEecchhcc--ccc--CCCCCEEEEEeceEEEec-c
Confidence 45999999988743 2 35666889999974 999998765322 234 89999999975 454432 2
Q ss_pred CccEEEEEeEEEEeccCCC
Q 012529 99 KQKVELKVNKIVLVGKSDP 117 (461)
Q Consensus 99 ~~~~el~~~~i~vl~~~~~ 117 (461)
.+.+||.+.+-..+.+|..
T Consensus 250 ~g~~El~~~~~s~I~~~~~ 268 (374)
T PRK15491 250 SQEVEIQIGNHGSLRKTDR 268 (374)
T ss_pred CCCEEEEeCCCceEEECCc
Confidence 3479999977666777753
No 175
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=81.83 E-value=21 Score=32.00 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=53.6
Q ss_pred CCCCEEEEEEEEe--eeecC-C--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~--~~R~~-~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
..|+.++|.|.|. |+... + .+.| .|.|+. .++.|....-.++ . .+-|.-|.|+|++... +
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~--~~v~V~Y~GilPD-----l--FrEG~gVVveG~~~~~--g--- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAG--GSVTVTYEGILPD-----L--FREGQGIVAQGVLEEG--N--- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCC--eEEEEEEcccCCc-----c--ccCCCeEEEEEEECCC--C---
Confidence 4689999999999 77665 3 3566 778986 4588887755442 1 6779999999999532 1
Q ss_pred EEEEEeEEEEeccCCCCC
Q 012529 102 VELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 102 ~el~~~~i~vl~~~~~~~ 119 (461)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~~vLAKhdekY 134 (160)
T PRK13165 120 -HIEA--KEVLAKHDENY 134 (160)
T ss_pred -eEEE--EEEEecCCCCC
Confidence 2344 36899998764
No 176
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=81.28 E-value=9 Score=40.22 Aligned_cols=76 Identities=14% Similarity=0.328 Sum_probs=57.7
Q ss_pred CEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCcchhhhh-hcCCCCCcEEEEEeeEeec-CCCCccEEEEE
Q 012529 30 LMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVK-SGLITTGASIWIQGNVVPS-QGSKQKVELKV 106 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~-~~~l~~g~~V~v~G~~~~~-~~~~~~~el~~ 106 (461)
..|.|.|=|.+.+.+ ++-+|+.|.|.. ..|.||+-+.... .++ . +..|+-|.|.|.+.-- +.+ .+.|.|
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~--a~i~~vmf~~~~~--~l~f~--~~~G~~V~v~g~v~~y~~~G--~~ql~v 89 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDEN--AQVRCVMFRGNNN--RLKFR--PQNGQQVLVRGGISVYEPRG--DYQIIC 89 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCC--cEEEEEEEcChhh--CCCCC--CCCCCEEEEEEEEEEECCCC--cEEEEE
Confidence 379999999999875 567889999987 4599998776421 111 3 7899999999999643 333 589999
Q ss_pred eEEEEec
Q 012529 107 NKIVLVG 113 (461)
Q Consensus 107 ~~i~vl~ 113 (461)
++++.-+
T Consensus 90 ~~i~~~G 96 (432)
T TIGR00237 90 FEMQPAG 96 (432)
T ss_pred EEeccCC
Confidence 9988644
No 177
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=81.26 E-value=7.8 Score=40.08 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=53.2
Q ss_pred CEEEEEEEEeee--ecCCCeEEEEEEcCccCccEEEEEeCCCcchhh-hhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 30 LMIVVAGWVRTL--RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 30 ~~v~v~G~v~~~--R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
..++|.|.|... ..-|+..|+.+.|+.|. |-+++-....+|.. +.. |.+||.|.+.|.++... |.+
T Consensus 267 ~~~~v~g~v~~~p~~ieGghv~v~i~d~~G~--I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~~-------~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEGGHVVVEITDGEGE--IGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPGT-------LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeCCEEEEEecCCCce--EEEEEecccccchHHHHh--cCCCCEEEEecCccccc-------eeE
Confidence 457888888764 33499999999999973 77777554434433 567 99999999999995532 666
Q ss_pred eEEEEecc
Q 012529 107 NKIVLVGK 114 (461)
Q Consensus 107 ~~i~vl~~ 114 (461)
+++.|+.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 66666443
No 178
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=80.88 E-value=24 Score=31.30 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=53.0
Q ss_pred CCCCEEEEEEEEe--eeec-C-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 27 RVGLMIVVAGWVR--TLRA-Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 27 ~~~~~v~v~G~v~--~~R~-~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
..|+.|+|.|+|. ++.. . ..+.| .|.|+. ..|.|..+...++ . .+-|..|.|+|++... -
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~--~~i~V~Y~G~lPd-----~--F~eg~~VVv~G~~~~~------g 112 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGN--ATVPVVYTGILPD-----L--FREGQGVVAEGRLQDG------G 112 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCC--eEEEEEECCCCCc-----c--ccCCCEEEEEEEECCC------C
Confidence 5689999999996 3543 3 56676 678886 4688888765442 2 6779999999999431 1
Q ss_pred EEEEeEEEEeccCCCCC
Q 012529 103 ELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 103 el~~~~i~vl~~~~~~~ 119 (461)
.++++ +||.||+..|
T Consensus 113 ~F~A~--~vLaKc~skY 127 (148)
T PRK13254 113 VFVAD--EVLAKHDENY 127 (148)
T ss_pred eEEEE--EEEecCCCCC
Confidence 34444 6889997654
No 179
>COG3689 Predicted membrane protein [Function unknown]
Probab=80.65 E-value=8 Score=37.27 Aligned_cols=89 Identities=11% Similarity=0.133 Sum_probs=57.2
Q ss_pred CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc----chhhhhhcCCCCCcEEEEEeeEeecCC--
Q 012529 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASIWIQGNVVPSQG-- 97 (461)
Q Consensus 24 ~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~----~~~~~~~~~l~~g~~V~v~G~~~~~~~-- 97 (461)
+.+..|++|.+.|+|-+=-..++-.++..| -|+ +=|++++... ..+.... ++..+.|.|+|++....-
T Consensus 170 pdef~Gk~Ie~tGFVy~~~~~~~N~lflaR--Fgi--icC~ADa~vygl~v~~~~~~~--y~ndtWltvkGtl~~e~~~~ 243 (271)
T COG3689 170 PDEFAGKKIEFTGFVYNDESFPKNYLFLAR--FGI--ICCAADAGVYGLLVELDNQTD--YKNDTWLTVKGTLSSEYLSD 243 (271)
T ss_pred chhhcCceEEEEEEEECCCCCCcceeehhh--hhe--eeeeccceeEEEEEEcccccc--CCCCceEEEEeEEEeeecCc
Confidence 557889999999999663333333344444 222 4455555431 1212234 899999999999976422
Q ss_pred -CCccEEEEEeEEEEeccCCCC
Q 012529 98 -SKQKVELKVNKIVLVGKSDPS 118 (461)
Q Consensus 98 -~~~~~el~~~~i~vl~~~~~~ 118 (461)
.++-.-|+|++++++-+...+
T Consensus 244 ~~~~ipvi~v~sv~~I~kP~nP 265 (271)
T COG3689 244 FKKRIPVIEVDSVEVIPKPANP 265 (271)
T ss_pred hhhcCcEEEeeeeeecCCCCCC
Confidence 233467899999998887654
No 180
>PRK07218 replication factor A; Provisional
Probab=80.43 E-value=12 Score=39.12 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=56.5
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeee--------cCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR--------AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R--------~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (461)
..|+||.+ .++.|.|.|+|-++- .-+.+.=+.|-|.||. +.+++..+. . |..|
T Consensus 59 ~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~--Ir~tlW~~~-------~--l~~G 119 (423)
T PRK07218 59 KDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGT--ISYTAWKDF-------G--LSPG 119 (423)
T ss_pred ccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCe--EEEEEECCC-------C--CCCC
Confidence 45666654 247799999998873 2256777778888864 888887642 3 9999
Q ss_pred cEEEEEeeEeecCCCCccEEEEEeEEEEecc
Q 012529 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 84 ~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~ 114 (461)
|+|.+.+-..+.-.+ .++|.+.+-+-+..
T Consensus 120 dvv~I~na~vre~~g--~~el~ig~~t~I~~ 148 (423)
T PRK07218 120 DTVTIGNAGVREWDG--RPELNIGESTTVSL 148 (423)
T ss_pred CEEEEeccEeeccCC--ceEEeccCcceEEE
Confidence 999999766554333 58888765444443
No 181
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=80.20 E-value=8.9 Score=30.70 Aligned_cols=53 Identities=11% Similarity=0.247 Sum_probs=41.2
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEee
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGN 91 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~ 91 (461)
.+.|.|++++..+.=+|+.|.|.||. +++.+.++.. .| -.. |..|+++-.+-.
T Consensus 6 ~l~v~Iks~~~~~~D~~v~l~DpTG~--i~~tiH~~v~~~y--~~~--l~~GavLlLk~V 59 (86)
T PF15072_consen 6 CLVVIIKSIVPSSEDAFVVLKDPTGE--IRGTIHRKVLEEY--GDE--LSPGAVLLLKDV 59 (86)
T ss_pred EEEEEEEEeeccCCCeEEEEECCCCc--EEEEEeHHHHhhc--CCc--cccCEEEEEeee
Confidence 58899999999877789999999974 9999987642 22 123 888888887743
No 182
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=79.54 E-value=20 Score=30.58 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=35.8
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC----C-CC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----G-SK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~-~~--~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+.... ..+. |..|+-|.|+|.+.... . ++ ...||.+++|..|++.
T Consensus 46 ~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 46 FNLEIWGKTAQV-AADY--VKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred EEEEEehHHHHH-HHHH--cCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 677665543211 1234 99999999999997652 1 21 2589999999999854
No 183
>PRK12366 replication factor A; Reviewed
Probab=79.14 E-value=13 Score=41.03 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=57.8
Q ss_pred CCCEEEEEEEEeeeec-------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC
Q 012529 28 VGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~-------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~ 97 (461)
.|..|.|.|.|.++-. . +.+.=+.|.|.|| +|-+++..+...+ . +..||+|.|.|.++..-.
T Consensus 183 ~g~~v~v~G~V~~~~~~~~f~rkdg~~~~~r~~~l~D~TG--~irvTlW~~~a~~----~--~~~g~vv~i~g~~~~~~~ 254 (637)
T PRK12366 183 PNLSATIEGEVTKAYPIKEFTRKDGSEGKLKSFILKDDTG--SIRVTLWNDLTDI----E--VNKGDIVRVKGYVKQGYR 254 (637)
T ss_pred CCCeEEEEEEEEEccCcEEEEEcCCCeeEEEEEEEEcCCC--cEEEEEEChhhcc----c--CCCCCEEEEEeEEecCcC
Confidence 4568999999988643 1 3455577889997 4999998765421 3 899999999995544332
Q ss_pred CCccEEEEEeEEEEeccCC
Q 012529 98 SKQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 98 ~~~~~el~~~~i~vl~~~~ 116 (461)
+++||++.+..++.+..
T Consensus 255 --~~~el~~~~~~~i~~~~ 271 (637)
T PRK12366 255 --TGLEISANNIEILEKLE 271 (637)
T ss_pred --CceEEEeCCceeecccc
Confidence 37999998888877653
No 184
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.02 E-value=4.1 Score=42.03 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~ 179 (461)
.+...+-.++++..-+|+.++||+-+.||.+....
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rke 216 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRKE 216 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHH
Confidence 34667778899999999999999999999998743
No 185
>PRK00036 primosomal replication protein N; Reviewed
Probab=78.94 E-value=7.1 Score=32.59 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=38.6
Q ss_pred cEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccC
Q 012529 60 NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 60 ~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~ 115 (461)
.||+++..+. -..+.. ++.|+.|.|+|.+..+..+...+=|+++.|+.+.+.
T Consensus 48 ~i~ava~G~~--a~~~~~--l~~Gs~v~v~GFLa~~~~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 48 TISAVALGDL--ALLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEhhH--HHHhcc--cCCCCEEEEEEEEEECCCCCCcEEEEhHHeEEcccc
Confidence 3777776532 223445 999999999999997555556789999999888554
No 186
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=78.39 E-value=1.4 Score=45.71 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=32.6
Q ss_pred ccccccCCcee-eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcC
Q 012529 374 AMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 374 ~fdl~~~G~~E-i~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g 442 (461)
-|+.+.+|.+. |++|+ ||+.|..++ | +-.|..|||||+|||+.++-+
T Consensus 282 vFe~~~~~~~~~i~~GG----RYD~L~~~f---g---------------~~~pAvGfai~lerL~~~l~~ 329 (392)
T PRK12421 282 VFAAYIPGRGQALARGG----RYDGIGEAF---G---------------RARPATGFSMDLKELLALQFL 329 (392)
T ss_pred EEEEEECCCCCcccCCC----CccchhHhh---C---------------CCCCCceEEeeHHHHHhhccc
Confidence 47888887655 77777 444444333 1 124889999999999987744
No 187
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=78.33 E-value=1.7 Score=44.89 Aligned_cols=44 Identities=30% Similarity=0.621 Sum_probs=31.1
Q ss_pred ccccccCCcee-eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHH
Q 012529 374 AMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 439 (461)
Q Consensus 374 ~fdl~~~G~~E-i~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~ 439 (461)
-|+.+.+|.|+ |++|+ ||+.+.+.+ |. -.|..||+||+|||+.+
T Consensus 275 vFe~~~~~~~~~i~~GG----RYD~L~~~f---g~---------------~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 275 VFEGYVDGVGNPIASGG----RYDDLLGRF---GR---------------ARPATGFSLDLDRLLEL 319 (391)
T ss_pred EEEEEECCCCCcccCCc----chhhHHHHc---CC---------------CCCCceEEeeHHHHHhh
Confidence 47888887655 77777 455555444 21 23889999999999984
No 188
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.43 E-value=15 Score=40.44 Aligned_cols=92 Identities=13% Similarity=0.237 Sum_probs=63.5
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLIT 81 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~---R~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~ 81 (461)
+.|++|... ...++|+|||.++ |. .|++--++|.|.+| .|++.+..+.. .|. .. |.
T Consensus 181 ~pI~~L~py--------~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg--~Irat~f~~~~dkf~--~~--l~ 246 (608)
T TIGR00617 181 MPIASLSPY--------QNKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESG--EIRATAFNEQADKFY--DI--IQ 246 (608)
T ss_pred EEHHHCCCC--------CCceEEEEEEEeccccceecCCCCCceeeEEEEecCCC--eEEEEECchHHHHHh--hh--cc
Confidence 456666652 2359999999763 32 26788889999665 59999877643 232 23 89
Q ss_pred CCcEEEEE-eeEeecCC----CCccEEEEEeEEEEeccCCC
Q 012529 82 TGASIWIQ-GNVVPSQG----SKQKVELKVNKIVLVGKSDP 117 (461)
Q Consensus 82 ~g~~V~v~-G~~~~~~~----~~~~~el~~~~i~vl~~~~~ 117 (461)
.|+++.++ |.|..... ....+||...+-+++-+|..
T Consensus 247 eG~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~d 287 (608)
T TIGR00617 247 EGKVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECED 287 (608)
T ss_pred cCCEEEECceEEEEccccccCCCCCEEEEECCCeEEEECCC
Confidence 99999996 67765432 13469999988888877753
No 189
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=77.10 E-value=14 Score=42.36 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=47.4
Q ss_pred HHHHHHHhhhCCcEEEecceeecCC-C-----CCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccc
Q 012529 155 AYATHKFFQENGFIWISSPIITASD-C-----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFR 228 (461)
Q Consensus 155 ~~~iR~ff~~~gF~EV~TPiL~~~~-~-----eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR 228 (461)
-+.+-+||.++|..-|.+--|.+.. + .++-.+|+ ++|-. +....+.|+=..-+|.|
T Consensus 3 R~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk-~~f~G-----------------~~~p~~~r~~~~QkCiR 64 (851)
T TIGR00344 3 RQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFK-PIFTG-----------------IVKPPSNRLVNAQPCIR 64 (851)
T ss_pred HHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhh-HHhcC-----------------CCCCCCCCccccccccc
Confidence 3556789999999999876666632 2 11222332 22211 00012456667779999
Q ss_pred cCCC----CCCCCccccccceeeeccCCH
Q 012529 229 AENS----NTSRHLAEFWMIEPELAFADL 253 (461)
Q Consensus 229 ~E~~----~t~rHl~EFtmlE~e~a~~d~ 253 (461)
+.+. .|.||..=|-||== .+|.||
T Consensus 65 ~nDld~VG~t~rHhTfFEMlGn-fSFgdY 92 (851)
T TIGR00344 65 LNDIENVGRTARHHTFFEMLGN-FSFGDY 92 (851)
T ss_pred ccchhhhcCCCcchhhHHhhcc-cchhhh
Confidence 8543 37899988888743 456664
No 190
>PRK02801 primosomal replication protein N; Provisional
Probab=76.75 E-value=8.8 Score=31.62 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=33.9
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEee--cCCCCccEEEEEeEEEEe
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP--SQGSKQKVELKVNKIVLV 112 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~--~~~~~~~~el~~~~i~vl 112 (461)
|+|++-.+.... ..+. |..|+-|.|+|.+.. ++.++..+.|+++.++.+
T Consensus 50 i~~va~G~~Ae~-~~~~--l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQFQA-ITQS--ITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHHHH-HHhh--cCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 778776643221 1235 999999999999985 344434567898888765
No 191
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=76.25 E-value=17 Score=33.34 Aligned_cols=37 Identities=11% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCCCcEEEEEeeEeecC----CC--CccEEEEEeEEEEeccCC
Q 012529 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~----~~--~~~~el~~~~i~vl~~~~ 116 (461)
|+.||-|.|+|.|..+. .+ ...+||.|++|.+|++..
T Consensus 67 l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~~ 109 (182)
T PRK08486 67 LSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSKS 109 (182)
T ss_pred cCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCCC
Confidence 99999999999997642 12 235899999999998753
No 192
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=76.09 E-value=15 Score=28.24 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=33.1
Q ss_pred EEEEEEeeeecCCCeEEEEEE-cCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVN-DGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~-D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
.|.|+|+++..+| +|+++- ++ +...++.+..... .. ++.|+.|.+.
T Consensus 7 ~v~g~V~si~d~G--~~v~~g~~g-----v~Gfl~~~~~~~~--~~--~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG--YILDIGIPG-----TTGFLPKKDAGNF--SK--LKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE--EEEEeCCCC-----cEEEEEHHHCCcc--cc--cCCCCEEEEE
Confidence 4899999999998 899983 22 5666765543221 24 8999998876
No 193
>PRK07080 hypothetical protein; Validated
Probab=74.85 E-value=3.6 Score=40.88 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=36.9
Q ss_pred eeEE-EecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 219 QVYT-FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfe-I~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
++|. .|.|||+|++...+-+-||+|-|+=.- .+-+++.+.-++.++..
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~i-Gt~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRI-GTPEQIVAFRQSWIERG 201 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEe-cCHHHHHHHHHHHHHHH
Confidence 5665 499999999988788889999997653 47777777766666554
No 194
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=74.48 E-value=3 Score=41.76 Aligned_cols=46 Identities=35% Similarity=0.680 Sum_probs=32.1
Q ss_pred ccccccCCcee-eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 374 AMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 374 ~fdl~~~G~~E-i~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
-|+++.+|.++ |++|+ ||+.+.+.+ |. -.|..||++|+|||+.++.
T Consensus 267 vFe~~~~~~~~~i~~GG----RYD~L~~~f---g~---------------~~~AvGfa~~~d~l~~~l~ 313 (314)
T TIGR00443 267 IFEGYAPGLGAPIAGGG----RYDNLLGRF---GR---------------PLPATGFALNLERLLEALT 313 (314)
T ss_pred EEEEEECCCCCcccCCc----cHHHHHHHc---CC---------------CCCCceEEecHHHHHHHhc
Confidence 47777777654 77777 456655544 21 2489999999999998764
No 195
>PRK07218 replication factor A; Provisional
Probab=74.36 E-value=30 Score=36.17 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCEEEEEEEEeee--e-----cC-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCc
Q 012529 29 GLMIVVAGWVRTL--R-----AQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (461)
Q Consensus 29 ~~~v~v~G~v~~~--R-----~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~ 100 (461)
+..|+|.|+|.++ | .. +.+.=..|.|.||. |.+++..+. .. |..||+|.|.+-.++.-.+
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~--Ir~tlW~~~------~~--l~~Gd~v~I~na~v~e~~G-- 239 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETGR--LPFTDWDPL------PE--IEIGASIRIEDAYVREFRG-- 239 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCce--EEEEEeccc------cc--CCCCCEEEEeeeEEeccCC--
Confidence 3458999999876 1 11 33444568888864 888887653 24 8999999999877765444
Q ss_pred cEEEEEeEEEEeccCC
Q 012529 101 KVELKVNKIVLVGKSD 116 (461)
Q Consensus 101 ~~el~~~~i~vl~~~~ 116 (461)
.+||.+.+-+-+...+
T Consensus 240 ~~elnv~~~t~I~~~d 255 (423)
T PRK07218 240 VPSVNVSEFTTVEALD 255 (423)
T ss_pred eEEEEECCceEEEECC
Confidence 6899998655555544
No 196
>PRK07211 replication factor A; Reviewed
Probab=72.23 E-value=21 Score=37.99 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCEEEEEEEEeee---e----c---CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE-eeEeecCC
Q 012529 29 GLMIVVAGWVRTL---R----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQG 97 (461)
Q Consensus 29 ~~~v~v~G~v~~~---R----~---~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~-G~~~~~~~ 97 (461)
+..|.|.|+|.++ | . .|++.=+.|-|.||. |.+++..+.... +.. |..|++|.|. |.+...
T Consensus 171 ~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~--IR~TlW~d~Ad~--~~~--le~G~Vv~I~~a~Vre~-- 242 (485)
T PRK07211 171 LSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGR--VRVTLWDDRADL--AEE--LDAGESVEIVDGYVRER-- 242 (485)
T ss_pred CCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCe--EEEEEechhhhh--hcc--CCCCCEEEEEeeEEEec--
Confidence 4668999999854 2 1 246777899999974 999998765321 234 8999999997 566543
Q ss_pred CCccEEEEEeEEEEeccCC
Q 012529 98 SKQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 98 ~~~~~el~~~~i~vl~~~~ 116 (461)
.+.+||.+..-..+.+|.
T Consensus 243 -~g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 243 -DGSLELHVGDRGAVEEVD 260 (485)
T ss_pred -CCcEEEEECCCceEEECC
Confidence 246999998777777765
No 197
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=72.12 E-value=56 Score=29.21 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=52.7
Q ss_pred CCCCEEEEEEEEe--eeecC-C--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~--~~R~~-~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
..++.+++.|.|. |+.+. + .+.| .+.|+.. .+.|..+.-.++ . .+-|.-|.++|++. . +
T Consensus 49 ~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilPD-----l--FrEGqgVVaeG~~~--~-g--- 112 (155)
T PRK13159 49 AGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNA--ATQVEYTGILPD-----L--FRDNQSVIANGRMQ--G-G--- 112 (155)
T ss_pred ccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCc--EEEEEEccCCCc-----c--ccCCCeEEEEEEEc--C-C---
Confidence 4568999999998 77665 3 3566 6779864 588888764442 1 56799999999995 1 2
Q ss_pred EEEEEeEEEEeccCCCCC
Q 012529 102 VELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 102 ~el~~~~i~vl~~~~~~~ 119 (461)
.+++ =+||.||+..|
T Consensus 113 -~F~A--~~vLAKHde~Y 127 (155)
T PRK13159 113 -RFVA--NEVLAKHDETY 127 (155)
T ss_pred -EEEE--eEEEecCCCcC
Confidence 3344 36899998764
No 198
>PRK06386 replication factor A; Reviewed
Probab=71.98 E-value=51 Score=33.68 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCEEEEEEEEeeeec-------C-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCc
Q 012529 29 GLMIVVAGWVRTLRA-------Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~-------~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~ 100 (461)
..-|.|.|+|..+=. . +.+.=+.|-|.||. |.+++..+ . |..|++|.+.+-.+..-. +
T Consensus 117 ~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGr--Ir~TlW~~--------~--l~eGd~v~i~na~v~e~~--G 182 (358)
T PRK06386 117 TPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTAR--VRISSFGK--------P--LEDNRFVRIENARVSQYN--G 182 (358)
T ss_pred CCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCe--EEEEEccc--------c--ccCCCEEEEeeeEEEccC--C
Confidence 345778888865411 1 44555667777753 77766542 4 889999999987766543 3
Q ss_pred cEEEEEeEEEEeccCCCCCC
Q 012529 101 KVELKVNKIVLVGKSDPSYP 120 (461)
Q Consensus 101 ~~el~~~~i~vl~~~~~~~P 120 (461)
.++|.+.+.+.+.+.+.+..
T Consensus 183 ~~el~v~~~t~I~~~~~~ie 202 (358)
T PRK06386 183 YIEISVGNKSVIKEVESDIN 202 (358)
T ss_pred eEEEEeCCeEEEEECCCCcc
Confidence 79999998888877654343
No 199
>PLN02900 alanyl-tRNA synthetase
Probab=71.89 E-value=34 Score=39.60 Aligned_cols=88 Identities=18% Similarity=0.307 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCC-C-----CCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASD-C-----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGP 225 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-----eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~ 225 (461)
++|=+.+-+||.++|...|.+--|.+.. + .++-.+|+ ++|... ..| +.....+.|+=..-+
T Consensus 14 ~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk-~~f~G~-----~~p-------~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 14 DRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFK-PIFLGT-----ADP-------NTPLRKLPRATNTQK 80 (936)
T ss_pred HHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhh-hhhcCC-----CCC-------CCCCCCCCceeeecc
Confidence 3555667889999999999887777733 2 12223343 232110 000 000013578888889
Q ss_pred cccc----CC----CCCCCCccccccceeeeccCCH
Q 012529 226 TFRA----EN----SNTSRHLAEFWMIEPELAFADL 253 (461)
Q Consensus 226 ~FR~----E~----~~t~rHl~EFtmlE~e~a~~d~ 253 (461)
|.|. .+ ..|.||..=|-||== .+|.||
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGn-fSfgdY 115 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDY 115 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhc-cchhhh
Confidence 9999 32 237899887777632 345564
No 200
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=71.73 E-value=27 Score=38.62 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=48.7
Q ss_pred CCCCEEEEEEEEeeeec----CCCeEEEEEEc-CccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 27 RVGLMIVVAGWVRTLRA----QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~----~~~~~Fi~l~D-~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
..|+.++|.|.|.+... .+++.-+.+.| +++. +.+++=.. .|- .+. +..|+.+.|.|++..... .
T Consensus 30 ~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~F~~--~~~-~~~--~~~g~~~~~~Gk~~~~~~---~ 99 (630)
T TIGR00643 30 LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKK--LELRFFNR--AFL-KKK--FKVGSKVVVYGKVKSSKF---K 99 (630)
T ss_pred CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCE--EEEEEECC--HHH-Hhh--CCCCCEEEEEEEEEeeCC---E
Confidence 45889999999876421 13456678899 8764 88877542 221 245 999999999999976432 3
Q ss_pred EEEEEeEE
Q 012529 102 VELKVNKI 109 (461)
Q Consensus 102 ~el~~~~i 109 (461)
+++.-.++
T Consensus 100 ~~~~~p~~ 107 (630)
T TIGR00643 100 AYLIHPEF 107 (630)
T ss_pred EEEECCEE
Confidence 44444444
No 201
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=70.55 E-value=33 Score=26.73 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=38.7
Q ss_pred EEEEEEeeeecCC-CeEEEEEEcCcc------CccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEE
Q 012529 33 VVAGWVRTLRAQS-SVTFIEVNDGSC------LSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (461)
Q Consensus 33 ~v~G~v~~~R~~~-~~~Fi~l~D~s~------~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~ 105 (461)
+|.|.|....... .-.|. |+|..+ .+.|=|...+ ... +..||.|+|+|++.+-.. ..+|.
T Consensus 1 ~v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~-------~~~--~~~Gd~V~vtG~v~ey~g---~tql~ 67 (78)
T cd04486 1 TVEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS-------GAD--VAVGDLVRVTGTVTEYYG---LTQLT 67 (78)
T ss_pred CeEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC-------CCC--CCCCCEEEEEEEEEeeCC---eEEEc
Confidence 3678888877642 23454 666521 1112222221 124 999999999999987543 24555
Q ss_pred EeE-EEEec
Q 012529 106 VNK-IVLVG 113 (461)
Q Consensus 106 ~~~-i~vl~ 113 (461)
... +++++
T Consensus 68 ~~~~~~~~~ 76 (78)
T cd04486 68 AVSAIEVLG 76 (78)
T ss_pred cCCceEEec
Confidence 533 55554
No 202
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=69.82 E-value=41 Score=37.04 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=51.5
Q ss_pred CCCCEEEEEEEEeeeec---C-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 27 RVGLMIVVAGWVRTLRA---Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~---~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
..|+.|++.|.|.+.-. . +++.=+.+.|+++. |-+++=.... | ..+. ++.|..|.|+|++...+. ..
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~~--l~l~fFn~~~-~-l~~~--~~~G~~v~v~Gk~~~~~~---~~ 128 (677)
T COG1200 58 RPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTGV--LTLVFFNFPA-Y-LKKK--LKVGERVIVYGKVKRFKG---GL 128 (677)
T ss_pred CCCceEEEEEEEEeeeccCCCCCceEEEEEecCcEE--EEEEEECccH-H-HHhh--CCCCCEEEEEEEEeeccC---ce
Confidence 46889999999966432 2 34444678887753 7666543221 2 1244 999999999999988543 36
Q ss_pred EEEEeEEEEec
Q 012529 103 ELKVNKIVLVG 113 (461)
Q Consensus 103 el~~~~i~vl~ 113 (461)
++.--++.+.+
T Consensus 129 ~~~hpe~~~~~ 139 (677)
T COG1200 129 QITHPEYIVND 139 (677)
T ss_pred EEEcceEEecC
Confidence 66666666654
No 203
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=68.62 E-value=15 Score=42.58 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=48.4
Q ss_pred CCCEEEEEEEEeeeecC----CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec
Q 012529 28 VGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~----~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~ 95 (461)
.++.++|.|.|.++|.. ..++|+.+.|.+|. +.+++-++ .|...+. |..++++.|+|+...+
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~--~e~~~F~~--~~~~~~~--l~~~~~~~~~~~~~~~ 961 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVE--ITIFVNDN--DYLLFET--LKKGDIYEFLISKSKN 961 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCc--EEEEEcHH--HHHHHHH--hhcCCEEEEEEEEcCC
Confidence 35678999999987653 36999999999974 99988654 2555555 8889999999988654
No 204
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=65.65 E-value=11 Score=40.87 Aligned_cols=113 Identities=11% Similarity=0.130 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCC-C-CCC---CcceeeeecCCCccc---ccCCccccCCCcc----ccCcCcc
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASD-C-EGA---GEQFCVTTLIPSSRE---AAESPVDAIPKTK----DGLIDWS 218 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-eg~---~~~F~v~~~~~~~~~---~~~s~~~~l~~~~----~~~~~~~ 218 (461)
...+.+.+|++|...||.|+-|-.+++.. . +.. .+. .|.-.|+.+.. +..|....|-... ..... -
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~-~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~-~ 441 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNN-DVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELP-Q 441 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCC-cEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCC-e
Confidence 45667788999999999999999998751 1 100 000 02222221110 1111111110000 11111 2
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQY 266 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~ 266 (461)
|+||||+||...+. +..+-.++.++-+-++. .|+.++...+|.++..
T Consensus 442 ~lFEiG~Vf~~~~~-~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~ 490 (551)
T TIGR00471 442 KIFEIGDVVVKDDK-SETRSRVVTKLAVGITHSEANFNEIKSIVAALARE 490 (551)
T ss_pred eEEEEEEEEEcCCc-cccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 79999999965322 11233344666555543 3788888888888753
No 205
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=64.84 E-value=6.8 Score=41.07 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=16.1
Q ss_pred CCCccccccHHHHHHHHcC
Q 012529 424 VPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 424 pP~gG~giGidRLvm~l~g 442 (461)
-|..||++|+|||++++..
T Consensus 299 ~PavGfa~g~erl~~~l~~ 317 (430)
T CHL00201 299 TPAVGCAIGLERLLLIAKD 317 (430)
T ss_pred CCeeEEEecHHHHHHHHhc
Confidence 3777999999999998754
No 206
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=62.83 E-value=7.5 Score=40.12 Aligned_cols=49 Identities=27% Similarity=0.556 Sum_probs=33.3
Q ss_pred ccccccCCc---eeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 374 AMDMLVPRI---GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 374 ~fdl~~~G~---~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
-|+.+..+. +-|++|+ ||+.+...+. -...|..||++|+|||+.++...
T Consensus 262 vFe~~~~~~~~~~~i~~GG----RYD~L~~~f~-----------------~~~~~avGfs~~~~~l~~~l~~~ 313 (397)
T TIGR00442 262 VFEFVTDELGAQGTICGGG----RYDGLVEELG-----------------GPPTPAVGFAIGIERLLLLLEEL 313 (397)
T ss_pred EEEEEECCCCccceeeecc----chHHHHHHhC-----------------CCCCceEEeeecHHHHHHHHHhc
Confidence 477776643 3577887 5665554441 11257889999999999998753
No 207
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=62.48 E-value=49 Score=28.65 Aligned_cols=63 Identities=21% Similarity=0.397 Sum_probs=39.4
Q ss_pred CCEEEEEEEEeeeecC-C-CeEEEE-E----EcC---ccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCC
Q 012529 29 GLMIVVAGWVRTLRAQ-S-SVTFIE-V----NDG---SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~-~-~~~Fi~-l----~D~---s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~ 98 (461)
++.+++.|.|.+.... + ...|.. + ..+ .....+++..+++.. .. +..||.|.++|++.+.+..
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~--l~~Gd~i~~~g~l~~~~~~ 147 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ-----PR--LQPGDRIRVRGKLKPPSGP 147 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc-----cc--cCCCCEEEEEEEEecCCCC
Confidence 7889999999888664 2 222332 1 111 112346666655432 14 8999999999999876543
No 208
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=62.05 E-value=25 Score=33.56 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCC-CC-----CCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASD-CE-----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGP 225 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~e-----g~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~ 225 (461)
++|-+.+-+||.++|...|..-.|.+.+ +. ++-.+|+ +++.. +....+.|+-..-+
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fk-p~f~G-----------------~~~p~~~r~~~~Qk 63 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFK-PIFLG-----------------EVPPPANRLVNSQK 63 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhh-HHhcC-----------------CCCCCCCceeeeee
Confidence 4667788899999999999877777422 21 1122232 12110 00112467777779
Q ss_pred ccccCC----CCCCCCccccccceeeeccCCH--HHHHHHHHHHH
Q 012529 226 TFRAEN----SNTSRHLAEFWMIEPELAFADL--KDDMACATAYL 264 (461)
Q Consensus 226 ~FR~E~----~~t~rHl~EFtmlE~e~a~~d~--~dlm~~~e~li 264 (461)
|.|.-+ ..|.||+.=|.|| --.+|.|| ++.+..+=+++
T Consensus 64 CiR~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~L 107 (232)
T cd00673 64 CIRAGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELL 107 (232)
T ss_pred ceecCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHH
Confidence 999632 2478999989888 33556675 44555444443
No 209
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=59.12 E-value=23 Score=29.56 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.8
Q ss_pred CCCCcEEEEEeeEeecCC----CC--ccEEEEEeEEEEeccC
Q 012529 80 ITTGASIWIQGNVVPSQG----SK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~~----~~--~~~el~~~~i~vl~~~ 115 (461)
|..||-|.|+|.+....- +. ...||.++++.+|++.
T Consensus 65 l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 65 CTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 999999999999987532 21 2589999999998764
No 210
>PRK08402 replication factor A; Reviewed
Probab=58.27 E-value=60 Score=33.16 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=50.7
Q ss_pred CEEEEEEEEeee---ec----C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEe-eEeecCCC
Q 012529 30 LMIVVAGWVRTL---RA----Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQGS 98 (461)
Q Consensus 30 ~~v~v~G~v~~~---R~----~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G-~~~~~~~~ 98 (461)
+.|.+.|+|.++ |. . |++.=+.|.|.||. +.+++..+... +.+.. |..||+|.|.| .+...-.+
T Consensus 73 ~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~--ir~TlW~~~a~-~~~~~--l~~Gdvi~I~~a~V~e~~~G 147 (355)
T PRK08402 73 RGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGR--ARVVLWDAKVA-KYYNK--INVGDVIKVIDAQVRESLSG 147 (355)
T ss_pred ceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCe--EEEEEechhhh-hhccc--CCCCCEEEEECCEEeecCCC
Confidence 679999999986 31 2 34555899999974 89988875421 00234 89999999985 55443233
Q ss_pred CccEEEEEeEEEEe
Q 012529 99 KQKVELKVNKIVLV 112 (461)
Q Consensus 99 ~~~~el~~~~i~vl 112 (461)
..||.+.+-..+
T Consensus 148 --~~eLsvg~~s~i 159 (355)
T PRK08402 148 --LPELHINFRARI 159 (355)
T ss_pred --cEEEEECCCceE
Confidence 468888654433
No 211
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=56.52 E-value=1.1e+02 Score=29.07 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCCCEEEEEEEEee---eec-CCCeEEEEE-------EcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec
Q 012529 27 RVGLMIVVAGWVRT---LRA-QSSVTFIEV-------NDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (461)
Q Consensus 27 ~~~~~v~v~G~v~~---~R~-~~~~~Fi~l-------~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~ 95 (461)
..+.+|.+.|++.+ .|. ..+-.|..+ +|.+. -|.|++...... ... +..|+.|.|+|++..=
T Consensus 6 ~~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D--~i~v~v~~rlae---~~~--l~kG~~v~VeGqlrsy 78 (219)
T PRK05813 6 MENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKD--ILPVTVSERLLA---GMD--LKVGTLVIVEGQLRSY 78 (219)
T ss_pred hhcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCcc--EEEEEEEhhhhh---hhc--ccCCCEEEEEEEEEEe
Confidence 35678999999976 343 234444433 24443 488888765432 224 8999999999999821
Q ss_pred --C-CCC--ccEEEEEeEEEEeccC
Q 012529 96 --Q-GSK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 96 --~-~~~--~~~el~~~~i~vl~~~ 115 (461)
. .++ .-+|+.|.+++.|++.
T Consensus 79 ~~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 79 NKFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred ccCCCCcEEEEEEEEEEEEEEccCC
Confidence 1 122 2478899999988875
No 212
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=56.38 E-value=96 Score=29.42 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=54.4
Q ss_pred CCEEEEEEEEee---eecC--C-CeEEEEEE-cCc--cCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC---
Q 012529 29 GLMIVVAGWVRT---LRAQ--S-SVTFIEVN-DGS--CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ--- 96 (461)
Q Consensus 29 ~~~v~v~G~v~~---~R~~--~-~~~Fi~l~-D~s--~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~--- 96 (461)
-..|.+.|++.+ +|.. | .++-+.|. +.. ...-+.|++-.+...+ +.. |..||-|.|+|.+....
T Consensus 109 ~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~Ae~--~~~--l~KG~~V~V~GrL~sr~y~~ 184 (219)
T PRK05813 109 PNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRNARF--CKT--LEVGDNIRVWGRVQSREYQK 184 (219)
T ss_pred ccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHHhHH--Hhh--CCCCCEEEEEEEEEecceEc
Confidence 467999999976 4543 3 34444443 211 1123778777654333 445 99999999999997652
Q ss_pred -CC------CccEEEEEeEEEEeccCC
Q 012529 97 -GS------KQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 97 -~~------~~~~el~~~~i~vl~~~~ 116 (461)
.+ ....|+.+++++.|++..
T Consensus 185 k~g~~~g~kr~~~eV~v~~i~~l~~~~ 211 (219)
T PRK05813 185 KLSEGEVVTKVAYEVSISKMEKVEKEE 211 (219)
T ss_pred CCCCccceEEEEEEEEEEEEEEcCChh
Confidence 11 125899999999988753
No 213
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=54.68 E-value=27 Score=31.49 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=36.1
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC----CCC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~~~--~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+.... ..+. |+.|+.|.|+|.+.... .++ ...||.|++|..|++.
T Consensus 49 i~vv~wgk~Ae~-~~~~--l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 49 INCVIWRQQAEN-LANW--AKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EEEEEEcHHHHH-HHHH--cCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 667776553221 1345 99999999999997643 222 3589999999988764
No 214
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=54.60 E-value=1e+02 Score=27.40 Aligned_cols=52 Identities=15% Similarity=0.358 Sum_probs=32.6
Q ss_pred EEEEEeCC-CcchhhhhhcCCCCCcEEEEEeeEeecC----CCC--ccEEEEEeEE----EEeccC
Q 012529 61 MQCVMTSD-AEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKI----VLVGKS 115 (461)
Q Consensus 61 iQvv~~~~-~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~~~--~~~el~~~~i----~vl~~~ 115 (461)
+.|++-.+ .... ..+. |+.||.|.|+|.+.... .++ ...||.++++ ..|+..
T Consensus 55 ~~v~~~g~~~Ae~-~~~~--l~KG~~V~V~GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 55 HRVVIFSEGLVSV-VERY--VTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred EEEEEeChHHHHH-HHHh--CCCCCEEEEEEEEEeCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 56665543 2111 1345 99999999999997652 122 2578888876 566644
No 215
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.15 E-value=16 Score=27.23 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhhCCcEEE
Q 012529 149 RVRNALAYATHKFFQENGFIWI 170 (461)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV 170 (461)
+.|.+|++.||+||...|=++|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 4688999999999999997776
No 216
>PRK04036 DNA polymerase II small subunit; Validated
Probab=53.92 E-value=45 Score=35.77 Aligned_cols=74 Identities=15% Similarity=0.278 Sum_probs=49.8
Q ss_pred CCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCCcch-hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEE
Q 012529 28 VGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~~~~-~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~ 105 (461)
.++++.|.|-|..+|.-+ +-..+.|-|.+|. +++++.++...+ +.... |-.|.+|.|.|+.... + -.+.
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~~~~~LED~sgr--v~l~~~~~~~~~~~~~~~--lvtg~vv~v~G~~~~~--g---~~f~ 222 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGHKIVELEDTTGT--FPVLIMKDREDLAELADE--LLLDEVIGVEGTLSGD--G---GLIF 222 (504)
T ss_pred CCceEEEEEEEEEeecccCCceEEEEECCCCe--EEEEeecchhhhhhhhhc--ccCceEEEEEEEEcCC--C---CEEE
Confidence 467899999999998642 2224789999975 999886543222 11234 8899999999987432 1 1356
Q ss_pred EeEEE
Q 012529 106 VNKIV 110 (461)
Q Consensus 106 ~~~i~ 110 (461)
|++|-
T Consensus 223 v~~i~ 227 (504)
T PRK04036 223 ADEII 227 (504)
T ss_pred EEEEE
Confidence 66543
No 217
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=52.73 E-value=36 Score=27.10 Aligned_cols=50 Identities=12% Similarity=0.269 Sum_probs=33.5
Q ss_pred cEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC----C--CccEEEEEeEEEEe
Q 012529 60 NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLV 112 (461)
Q Consensus 60 ~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~----~--~~~~el~~~~i~vl 112 (461)
.++|.+..+... ..++. ++.||.|.|+|.+....- + ...+++.+++|.++
T Consensus 45 ~~~v~~~g~~a~-~~~~~--~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 45 WIRVVAFGKLAE-NAAKY--LKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred EEEEEEEhHHHH-HHHHH--hCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 477877654221 12455 999999999999976531 1 23578888887653
No 218
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=51.00 E-value=72 Score=23.17 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=37.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcC-ccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDG-SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~-s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
.+.|.|..++..|....++|... ++ +.|.+-++.+. .++ . +..||.|.+.
T Consensus 6 ~l~a~V~~v~~~G~~vRlEl~~~~~~-~~iEvel~~~~---~~l-~--l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVGPEVRLELKRLDDG-EPIEVELPRER---RQL-G--LQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecCCeEEEEEEECCCC-CEEEEEeCHhH---Hhc-C--CCCCCEEEEE
Confidence 47889999999999999999654 44 57888887654 112 3 7779998875
No 219
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=50.02 E-value=30 Score=31.40 Aligned_cols=52 Identities=10% Similarity=0.252 Sum_probs=35.7
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC----CC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----SK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~----~~--~~~el~~~~i~vl~~~ 115 (461)
+.|++-...... ..+. |+.||.|.|+|.+....- ++ ..+||.+++|.+|+..
T Consensus 54 ~~Vv~fgk~AE~-v~~~--LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 54 HRIVFYRRQAEV-AGEY--LRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEhHHHHH-HHHH--CCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 566665432211 1345 999999999999987532 21 3589999999998864
No 220
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=48.97 E-value=30 Score=27.93 Aligned_cols=49 Identities=12% Similarity=0.317 Sum_probs=28.6
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC----CC--CccEEEEEeEEEEe
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLV 112 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~~--~~~~el~~~~i~vl 112 (461)
++|++-.+.... ..+. |..||.|.|+|.+.... .+ ...++|.|++|.+|
T Consensus 50 ~~v~~~g~~A~~-~~~~--l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 50 INVVAWGKLAEN-VAEY--LKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEHHHHHH-HHHH----TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEeeeecccc-cceE--EcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 555555432111 1345 99999999999997542 22 23588999998875
No 221
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=48.61 E-value=31 Score=31.42 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=35.2
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC----CC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----SK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~----~~--~~~el~~~~i~vl~~~ 115 (461)
+-|++-.+.... ..+. |+.|+.|.|+|.+....- ++ ..+||.|+.|.+|.+.
T Consensus 49 i~~v~wgk~Ae~-~~~~--l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 49 INCVIWRKQAEN-VANY--LKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEeCcHHHH-HHHH--cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 566665543211 1345 999999999999987532 21 2578899999888754
No 222
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=48.30 E-value=12 Score=36.22 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=38.1
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 448 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ird 448 (461)
.+--.+|+.++|| ||.-=- -|.. -|++ --|.++=+--|+|||.|.|-|.+||-|
T Consensus 120 AwGlGWEVWldGM-EITQfT-----------YFQQvGGi~-------------~~pv~~EITYGLERiamylQ~vdnv~d 174 (284)
T PF02091_consen 120 AWGLGWEVWLDGM-EITQFT-----------YFQQVGGID-------------CKPVSVEITYGLERIAMYLQGVDNVYD 174 (284)
T ss_dssp EEEEEEEEEETTC-EEEEEE-----------EEEEETTEE--------------SS--EEEEEEHHHHHHHHCT-SSGGG
T ss_pred ccccccEEEECCE-EEEEee-----------eeeeeCCcc-------------ccccceehhhhHHHHHHHHhCCCeeEe
Confidence 4556899999998 986310 0011 1222 136678899999999999999999999
Q ss_pred ccc
Q 012529 449 AIP 451 (461)
Q Consensus 449 v~~ 451 (461)
++.
T Consensus 175 l~w 177 (284)
T PF02091_consen 175 LIW 177 (284)
T ss_dssp SEE
T ss_pred eee
Confidence 864
No 223
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.28 E-value=32 Score=40.27 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=29.2
Q ss_pred CCCEEEEEEEEeeeecC---C---CeEEEEEEcCccCccEEEEE
Q 012529 28 VGLMIVVAGWVRTLRAQ---S---SVTFIEVNDGSCLSNMQCVM 65 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~---~---~~~Fi~l~D~s~~~~iQvv~ 65 (461)
.|.+|++.|.|.++|.. + .++|+.|.|.+|. +.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~--ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGS--IEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCc--EEEEe
Confidence 46789999999877652 2 4999999999975 88876
No 224
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=48.24 E-value=21 Score=38.04 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=33.4
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeec--cCCHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELA--FADLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a--~~d~~dlm~~~e~li~~i 267 (461)
|+||||+|||.+.....+|+..+.+..+-.+ -.|+.|+...++.|+..+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 6999999998863223467766666542121 237889999888888753
No 225
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=47.52 E-value=13 Score=35.77 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=40.6
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 448 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ird 448 (461)
.+--.+|+.++|| ||.-= . -|.. -|++ --|..+=+--|+|||.|.|-|.+||-|
T Consensus 121 AwGLGWEVWldGM-EITQF-----T------YFQQvGGi~-------------~~pv~~EiTYGLERiamylQ~vd~v~d 175 (279)
T cd00733 121 AWGLGWEVWLDGM-EVTQF-----T------YFQQVGGIP-------------CKPISVEITYGLERIAMYLQGVDNVYD 175 (279)
T ss_pred ccccccEEEECCe-eeeee-----e------eeeeeCCee-------------ccccceeeehhHHHHHHHHhCCCceec
Confidence 3456799999998 88621 1 1111 1232 136778899999999999999999998
Q ss_pred ccc
Q 012529 449 AIP 451 (461)
Q Consensus 449 v~~ 451 (461)
+..
T Consensus 176 l~w 178 (279)
T cd00733 176 IEW 178 (279)
T ss_pred ccc
Confidence 764
No 226
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=47.31 E-value=32 Score=31.60 Aligned_cols=52 Identities=12% Similarity=0.282 Sum_probs=35.3
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC----C--CccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~----~--~~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+.... ..+. |+.||.|.|+|.+....- + ...+||.|++|.+|+..
T Consensus 54 ~~V~~fGk~AE~-v~~~--LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 54 HRVAFFGRLAEI-VGEY--LKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEehHHHHH-HHHH--hCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 555554432111 1345 999999999999986531 2 23689999999999864
No 227
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=45.74 E-value=14 Score=35.61 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=41.1
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 448 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ird 448 (461)
.+--.+|+.++|| ||.-= . -|.. -|++ --|..+=+--|+|||.|.|-|.+||-|
T Consensus 125 AwGlGWEVWldGM-EITQF-----T------YFQQvGGi~-------------~~pv~~EITYGLERiamylQ~vd~v~d 179 (283)
T PRK09348 125 AWGLGWEVWLDGM-EVTQF-----T------YFQQVGGIE-------------CKPVTGEITYGLERLAMYLQGVDNVYD 179 (283)
T ss_pred ccccceEEEECCe-eeeee-----e------eeeeeCCee-------------ccccceeeehhHHHHHHHHhCCCceee
Confidence 3456799999998 88621 1 1111 1232 136778899999999999999999999
Q ss_pred cccC
Q 012529 449 AIPF 452 (461)
Q Consensus 449 v~~F 452 (461)
+..=
T Consensus 180 l~w~ 183 (283)
T PRK09348 180 LVWN 183 (283)
T ss_pred eecC
Confidence 8653
No 228
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=45.25 E-value=1.2e+02 Score=22.27 Aligned_cols=48 Identities=6% Similarity=0.190 Sum_probs=32.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc----hhhhhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG----YDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~----~~~~~~~~l~~g~~V~v~ 89 (461)
.+.|+|.++...| +|+.|.++ ++..++.+... .+.-.. ++.|+.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~V~l~~~-----~~gli~~s~l~~~~~~~~~~~--~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG--CIVSFYNN-----VKGFLPKSELSEAFIKDPEEH--FRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc--EEEEECCC-----CEEEEEHHHcChhhcCCHHHc--ccCCCEEEEE
Confidence 3689999998766 89999543 57777764321 111233 8889998887
No 229
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.23 E-value=40 Score=35.39 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CC-------CCcceeeeecCCCcccccCCccccC-----CCc-ccc
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDAI-----PKT-KDG 213 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~~~~~~~s~~~~l-----~~~-~~~ 213 (461)
-++.+.++..||.=...+||.||-||.|-...- |- .-+.|.+..-.. . ....|+... +.. .-+
T Consensus 192 ~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke-~--~~LKPMNCPgHcLmf~~r~rS 268 (560)
T KOG1637|consen 192 TRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKE-E--FALKPMNCPGHCLMFAHRDRS 268 (560)
T ss_pred chHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechh-h--hccCccCCCccccccccCCcc
Confidence 367789999999999999999999999987532 21 124565543111 0 111121110 000 000
Q ss_pred CcCc-ceeEEEecccccCCC---CCCCCccccccceeeeccCCHHHHHHHHHHHHH
Q 012529 214 LIDW-SQVYTFGPTFRAENS---NTSRHLAEFWMIEPELAFADLKDDMACATAYLQ 265 (461)
Q Consensus 214 ~~~~-~rVfeI~~~FR~E~~---~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~ 265 (461)
--.+ -|.=.+|..=|||-| -+-+|+-+|.|=|.-. |++.+++-+.++.++.
T Consensus 269 ~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt~~Qi~~Eik~~l~ 323 (560)
T KOG1637|consen 269 YRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCTPDQVKEEIKGCLD 323 (560)
T ss_pred HhhCCccccCcceeeeccccccccccceeeeecccCceE-EecCccHHHHHHHHHH
Confidence 0001 145567888999965 2357899999988765 5655555555544443
No 230
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.36 E-value=5.5 Score=41.54 Aligned_cols=32 Identities=38% Similarity=0.421 Sum_probs=24.0
Q ss_pred eEEEecccccCCCC--CCCCccccccceeeeccCC
Q 012529 220 VYTFGPTFRAENSN--TSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 220 VfeI~~~FR~E~~~--t~rHl~EFtmlE~e~a~~d 252 (461)
.-+||++||||=|. +--+.-||||.|+|- |+|
T Consensus 212 ~AqiG~~fRNEISpRsGLlRvrEF~maEIEH-Fvd 245 (599)
T KOG2298|consen 212 SAQIGKSFRNEISPRSGLLRVREFTMAEIEH-FVD 245 (599)
T ss_pred HHHhchHhhhccCcccCceeEEEeehHHhhc-cCC
Confidence 45899999999541 233678999999986 554
No 231
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=42.74 E-value=45 Score=30.11 Aligned_cols=52 Identities=10% Similarity=0.230 Sum_probs=35.0
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC----CCC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~~~--~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+...+ ..+. |+.||.|.|+|.+.... .+. ..+||.+++|.+|+..
T Consensus 54 ~~Vv~fgk~Ae~-v~~~--L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 54 HRVKFFGKLGEI-AGEY--LRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred EEEEEehHHHHH-HHHh--cCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 555555432111 1244 99999999999997652 221 3589999999998865
No 232
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=42.66 E-value=13 Score=35.12 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=24.2
Q ss_pred ccCCC---CCccccccHHHHHHHHcCCCCcccc
Q 012529 420 HYGSV---PHAGFGLGFERLVQFATGVENIRDA 449 (461)
Q Consensus 420 ~~G~p---P~gG~giGidRLvm~l~g~~~Irdv 449 (461)
++|+| |...+.|++|+|+|..-|.++||..
T Consensus 180 ~~~i~~~~~v~~~Eidl~~l~~~~~~~~~~~~~ 212 (218)
T cd00496 180 NAGIDEEYSGFAFGIGLERLAMLKYGIPDIRLF 212 (218)
T ss_pred HCCCCCCceEEEEEecHHHHHHHHhCCcHHHHH
Confidence 34553 4467899999999999999999963
No 233
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=42.59 E-value=2.4e+02 Score=24.94 Aligned_cols=81 Identities=15% Similarity=0.271 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEEEEeeeecC-CCe-EEEEEEcC-ccCc-----cEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC
Q 012529 25 LDRVGLMIVVAGWVRTLRAQ-SSV-TFIEVNDG-SCLS-----NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (461)
Q Consensus 25 ~~~~~~~v~v~G~v~~~R~~-~~~-~Fi~l~D~-s~~~-----~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~ 96 (461)
....|+.|+|.|+|.=+-.. +++ -|+.+.+. .|.- .=|+|.=+-... ++. -..-+-|.|+|++....
T Consensus 51 ~~L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqiV~V~~~~~---~~~--~~~~~pv~V~G~l~~~~ 125 (146)
T PF11736_consen 51 KALDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQIVHVKMPKP---IPV--DSLYDPVWVEGTLKVER 125 (146)
T ss_pred HHhCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccEEEEEeCCC---ccc--cccceeEEEEEEEEecc
Confidence 45789999999999988764 344 68888773 3310 013221110000 111 22357899999997754
Q ss_pred CC----CccEEEEEeEEE
Q 012529 97 GS----KQKVELKVNKIV 110 (461)
Q Consensus 97 ~~----~~~~el~~~~i~ 110 (461)
.. ...+.+.+++|+
T Consensus 126 ~~~~~~~~~Y~m~a~~v~ 143 (146)
T PF11736_consen 126 SSSDLGTSGYSMDADSVE 143 (146)
T ss_pred ccchheeEEEEEEeeEEE
Confidence 32 234566666554
No 234
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=41.93 E-value=1.4e+02 Score=24.53 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=39.8
Q ss_pred EEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEec
Q 012529 48 TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (461)
Q Consensus 48 ~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~ 113 (461)
-=+.|+||... +|.++....... +..+.|+.|++|.+.-....+-... .--|.+.+++|+.
T Consensus 40 yR~~lSDG~~~--~~amLatqln~l--v~~g~l~~~siirl~~y~~n~v~~~-k~iiiil~leVv~ 100 (101)
T PF04057_consen 40 YRLVLSDGVHS--IQAMLATQLNHL--VESGELQKGSIIRLKQYTCNTVKNG-KKIIIILDLEVVQ 100 (101)
T ss_dssp EEEEEESSSEE--EEEEESGGGHHH--HHTTSSSTT-EEEEEEEEEEESTTS-SEEEEEEEEEEEE
T ss_pred EEEEEEChHHH--HHHHhHHHhHHH--HhcCCcccCCEEEEeEEEEeeccCC-CEEEEEEeeEEEe
Confidence 33789999854 999887654222 3445599999999987655443311 2347778888764
No 235
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=41.93 E-value=14 Score=36.35 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=29.6
Q ss_pred ccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 374 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 374 ~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
-|+.|.+|. .|++|+-.. + .--|..|||+|+|||+.+|.
T Consensus 242 vFe~~~~~~-~i~~GGRYD-------------~---------------~~~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 242 FFRFFDGNS-TLASGGNYE-------------I---------------DGISSSGFALYTDNLIEILL 280 (281)
T ss_pred EEEEEECCc-eeccccCCC-------------C---------------CCCCcceEEeeHHHHHHHhh
Confidence 588888884 899998544 0 01388999999999998775
No 236
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=41.35 E-value=46 Score=29.98 Aligned_cols=52 Identities=12% Similarity=0.287 Sum_probs=34.7
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC----CC--CccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~~--~~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+.... ..+. |..||-|.|+|.+.... .+ ...+||.|++|.+|+-.
T Consensus 45 i~v~awg~~Ae~-v~~y--L~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 45 CRCNIWGNRYDK-MLPY--LKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEhHHHHH-HHHh--CCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 556555432111 1345 99999999999998652 12 13589999999998654
No 237
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=40.97 E-value=2e+02 Score=35.07 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCCEEEEEEEEeee--ecC--CC-eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTL--RAQ--SS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~--R~~--~~-~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.+..|+|.|-|-.+ |.. |+ +.=+.|.|.+..-.++..+. +...-+.+.. |+.|+.|.|+|.+...+-. +++
T Consensus 235 ~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~-~~~~~~~~~~--~~~g~~v~~~g~~~~d~~~-~~~ 310 (1437)
T PRK00448 235 EERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSR-DKEDLKKFDE--IKKGDWVKVRGSVQNDTFT-RDL 310 (1437)
T ss_pred cCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEec-CcchhHHHhc--CCCCCEEEEEEEEeccCCC-Cce
Confidence 34679999999775 332 33 43467889986423333332 2222233455 9999999999999775433 367
Q ss_pred EEEEeEEEEec
Q 012529 103 ELKVNKIVLVG 113 (461)
Q Consensus 103 el~~~~i~vl~ 113 (461)
.+.+.++..+.
T Consensus 311 ~~~~~~~~~~~ 321 (1437)
T PRK00448 311 VMNAQDINEIK 321 (1437)
T ss_pred EEEeeeeeecC
Confidence 77777776543
No 238
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=39.68 E-value=23 Score=37.75 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=27.2
Q ss_pred cCCC-CCccccccHHHHHHHHcCCCCcccc--ccCCCCC
Q 012529 421 YGSV-PHAGFGLGFERLVQFATGVENIRDA--IPFPRTP 456 (461)
Q Consensus 421 ~G~p-P~gG~giGidRLvm~l~g~~~Irdv--~~FPr~~ 456 (461)
||.+ |...|+|++|||+|...+.++||+. -.||+.|
T Consensus 312 fDI~~pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFP 350 (529)
T PRK06253 312 YGIDVPVMNLGLGVERLAMILYGAEDVREMVYPQFYEWE 350 (529)
T ss_pred cCCCCceEEEEEeHHHHHhhhcCcccccccCcCCCCCCC
Confidence 4444 5688999999999999998899984 2444444
No 239
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=38.90 E-value=2.6e+02 Score=33.50 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=52.3
Q ss_pred CCCEEEEEEEEeee--ec--CCCeE-EEEEEcCccCccEEEEEeC-CCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 28 VGLMIVVAGWVRTL--RA--QSSVT-FIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 28 ~~~~v~v~G~v~~~--R~--~~~~~-Fi~l~D~s~~~~iQvv~~~-~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
....|+|.|-|-.+ |. .|+.. -+.|.|.+.. |-|..-. +....+.+.. |+.|+.|.|+|.+....-. ++
T Consensus 6 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s--~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~ 80 (1213)
T TIGR01405 6 EENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDS--LILKKFLKSEEDPEKFDG--IKIGKWVRARGKIELDNFS-RD 80 (1213)
T ss_pred cCCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCC--EEEEEecccccchHHHhh--cCCCcEEEEEEEEeccCCC-Cc
Confidence 34679999998764 22 24444 4788999854 5553322 2222333456 9999999999999765433 36
Q ss_pred EEEEEeEEEEec
Q 012529 102 VELKVNKIVLVG 113 (461)
Q Consensus 102 ~el~~~~i~vl~ 113 (461)
+.+.+.+|..+.
T Consensus 81 ~~~~~~~~~~~~ 92 (1213)
T TIGR01405 81 LQMIIKDIEEIP 92 (1213)
T ss_pred eEEEeeeeeecC
Confidence 777777776543
No 240
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=38.73 E-value=77 Score=27.31 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=28.4
Q ss_pred CCCCcEEEEEeeEeecCC---CC--ccEEEEEeEEEEeccC
Q 012529 80 ITTGASIWIQGNVVPSQG---SK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~~---~~--~~~el~~~~i~vl~~~ 115 (461)
|..||.|.|+|.+....- ++ ...||.++++.+|...
T Consensus 65 l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~k 105 (131)
T PRK07274 65 ASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLESR 105 (131)
T ss_pred cCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcCC
Confidence 999999999999977643 21 2579999999988743
No 241
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=38.72 E-value=69 Score=24.49 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=31.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc------chhhh-hhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE------GYDQV-KSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~------~~~~~-~~~~l~~g~~V~v~ 89 (461)
.|.|.|.++...| +|++|..+ +...++.... +...+ +. ++.|+.|.+.
T Consensus 6 ~V~g~V~~i~~~G--~fV~l~~~-----v~G~v~~~~ls~~~~~~~~~~~~~--~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG--VFFRLSSS-----IVGRVLFQNVTKYFVSDPSLYNKY--LPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc--EEEEeCCC-----CEEEEEHHHccCccccChhhHhcc--cCCCCEEEEE
Confidence 4689999998777 89999643 5566653221 11112 34 7899988865
No 242
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=38.13 E-value=20 Score=34.73 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=41.5
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 448 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ird 448 (461)
.+--.+|+.++|| ||.-= . -|.. -|++ --|..+=+--|+|||.|.|-|.+||-|
T Consensus 122 AwGlGWEVWldGM-EITQF-----T------YFQQvGGi~-------------~~pv~~EITYGLERiaMylQ~vd~v~d 176 (293)
T TIGR00388 122 AWGLGWEVWLDGM-EVTQF-----T------YFQQVGGLE-------------CKPVSVEITYGLERLAMYIQGVENVYD 176 (293)
T ss_pred ccccccEEEECCe-eeeee-----e------eeeeeCCee-------------ccccceeeehhHHHHHHHHhCCCeeee
Confidence 3456799999998 88621 1 1111 1232 135667788999999999999999999
Q ss_pred cccCC
Q 012529 449 AIPFP 453 (461)
Q Consensus 449 v~~FP 453 (461)
...=.
T Consensus 177 l~w~~ 181 (293)
T TIGR00388 177 LEWSD 181 (293)
T ss_pred eeecC
Confidence 87654
No 243
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.13 E-value=61 Score=29.13 Aligned_cols=53 Identities=11% Similarity=0.285 Sum_probs=34.6
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC----CC--CccEEEEEeEEEEeccCC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~~--~~~~el~~~~i~vl~~~~ 116 (461)
+.|++-.+.... ..+. |..|+.|.|+|.+.... .+ ...+||.|++|..|....
T Consensus 53 ~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~~ 111 (164)
T TIGR00621 53 HDIVIFGRLAEV-AAQY--LKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLLG 111 (164)
T ss_pred EEEEEehHHHHH-HHHh--CCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeeccccC
Confidence 555554432111 1345 99999999999997652 22 235889999998877643
No 244
>PLN02972 Histidyl-tRNA synthetase
Probab=36.60 E-value=22 Score=39.95 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=31.6
Q ss_pred ccccccCC--ceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcC
Q 012529 374 AMDMLVPR--IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 374 ~fdl~~~G--~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g 442 (461)
-|+.+..| ++-|++|+ |||.|...+. ---.|.-||+||+|||+.++..
T Consensus 606 VFE~~~~g~~~gsIagGG----RYD~Lv~~Fg-----------------G~~vPAVGFSiGIERL~~~L~~ 655 (763)
T PLN02972 606 IYEAVFKGAQVGSIAAGG----RYDNLVGMFS-----------------GKQVPAVGVSLGIERVFAIMEQ 655 (763)
T ss_pred EEEEEEcCCccceeeecC----CchhHHHhcC-----------------CCCCCEEEEEecHHHHHHHHHH
Confidence 36777664 34677776 4555544331 0135899999999999988853
No 245
>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB3 has a pronounced groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for strong ssDNA binding []. ; PDB: 1IYJ_D 1MIU_A.
Probab=36.58 E-value=3e+02 Score=24.27 Aligned_cols=85 Identities=8% Similarity=0.077 Sum_probs=46.6
Q ss_pred CCEEEEEEEEeeeecCCCe-EEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 29 GLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~~~~-~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
=.+|-+.|-|-++..+.++ .-+-|.|... +-+.|.+..+...|..-.- |++|..|.++----++.+...--.+.+.
T Consensus 18 ~~EvD~VG~VvsV~~~~~f~~~vYLsD~~~-Nll~Ikfw~~l~~~~~eDi--lk~~~liA~SNLqwR~~s~s~iP~~~A~ 94 (143)
T PF09104_consen 18 YGEVDTVGFVVSVSKKQGFQPLVYLSDECH-NLLAIKFWTGLNQYGYEDI--LKPGSLIAASNLQWRPESTSGIPTLFAT 94 (143)
T ss_dssp CCEEEEEEEEEEEE--TTS--EEEEE-TTS--EEEEEESS-------SS-----TT-EEEEEEEEE-S-TTSSS-EEEEE
T ss_pred ccccceEEEEEEEEecCCCceeEEeecCCc-cEEEEEeccCccccchhhh--cCcceEEEEeeeEeecccccCCCeeEec
Confidence 3568899999999775444 3367889875 4577877776543322122 7999999998433333333333577889
Q ss_pred EEEEeccCC
Q 012529 108 KIVLVGKSD 116 (461)
Q Consensus 108 ~i~vl~~~~ 116 (461)
++++.+..+
T Consensus 95 d~S~FS~nP 103 (143)
T PF09104_consen 95 DLSVFSANP 103 (143)
T ss_dssp CCEEEESS-
T ss_pred cceeeecCc
Confidence 999999864
No 246
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=36.53 E-value=3e+02 Score=24.92 Aligned_cols=36 Identities=14% Similarity=0.381 Sum_probs=24.6
Q ss_pred CCCCcEEEEEeeEeecC----CCC--ccEEEEEeEE----EEeccC
Q 012529 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKI----VLVGKS 115 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~----~~~--~~~el~~~~i----~vl~~~ 115 (461)
|+.|+.|.|+|.+..+. .++ ..+||.++++ +.|.+.
T Consensus 72 LkKG~~V~VeGrL~~r~w~dkdG~~r~~~eIiv~~~~~~l~~l~~~ 117 (166)
T PRK06341 72 LKKGAKVYIEGQLQTRKWTDQSGVERYSTEVVLQGFNSTLTMLDGR 117 (166)
T ss_pred cCCCCEEEEEEEEEeCcEECCCCCEEEEEEEEEEecccceEEcccC
Confidence 99999999999997542 222 2577777653 555543
No 247
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=35.32 E-value=73 Score=29.57 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=43.1
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEE
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~ 110 (461)
.-++.|||-.+-. +..+|...... +++|+.++.. .. ++.||.|.|+|.+.+.-+ ..+.|++++
T Consensus 39 ~~tiEGrVvEV~~--~~i~iesk~yn--~~v~i~~d~~-------~n--vKVGD~VKaTG~m~rnf~----~ym~A~sVE 101 (213)
T PRK06763 39 FSTIEGRVVEVDN--GVIVIKSKQYE--EPVSVYIDSL-------SN--VKVGDEVKATGSMMRNFT----EYMVATAVE 101 (213)
T ss_pred cceeeeEEEEEeC--CEEEEEeccCC--CceEEEecCC-------CC--cccCcEEEEchHHHHhhH----Hhhhhhhhe
Confidence 3588999977663 44555555444 5699988754 24 899999999999765432 234555554
Q ss_pred Eec
Q 012529 111 LVG 113 (461)
Q Consensus 111 vl~ 113 (461)
-++
T Consensus 102 k~~ 104 (213)
T PRK06763 102 NTT 104 (213)
T ss_pred eec
Confidence 443
No 248
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=34.98 E-value=1.2e+02 Score=22.76 Aligned_cols=50 Identities=8% Similarity=0.163 Sum_probs=32.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--c-hhhh-hhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G-YDQV-KSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~-~~~~-~~~~l~~g~~V~v~ 89 (461)
.+.|.|.++...| +|++|.+..+ +...++.+.. . +... .. ++.||.|.|.
T Consensus 6 ~~~g~V~~v~~~g--~~v~l~~~~~---~~gll~~s~l~~~~~~~~~~~--~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG--AYVSLLEYGN---IEGMILLSELSRRRIRSIRKL--VKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE--EEEEEcCCCC---eEEEEEhHHcCCcccCCHHHe--eCCCCEEEEE
Confidence 3589999998766 8999977532 4566665431 1 1112 23 7899998886
No 249
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=34.76 E-value=44 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=18.4
Q ss_pred HHcCCCcccH-HHHHHHhccCCCCC
Q 012529 403 DELKLNRDSY-WWYLDLRHYGSVPH 426 (461)
Q Consensus 403 ~~~~~~~~~~-~~yl~a~~~G~pP~ 426 (461)
+.+|+.+.+. .|...+.++|.||.
T Consensus 11 ~ALg~~~~~~PPwl~~M~~~G~PP~ 35 (48)
T PF04046_consen 11 EALGMQENDPPPWLYRMRRLGYPPG 35 (48)
T ss_pred HHcCCCCCCCChHHHHHHhcCCCCC
Confidence 4567765544 88999999999984
No 250
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=34.73 E-value=1.1e+02 Score=27.14 Aligned_cols=52 Identities=4% Similarity=0.129 Sum_probs=34.6
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC----CC--CccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~~--~~~~el~~~~i~vl~~~ 115 (461)
+.|++-...... ..+. |..||-|.|+|.+.... .+ ...+||.+++|.+|...
T Consensus 56 ~~V~~wg~~Ae~-v~~~--l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r 113 (148)
T PRK08182 56 APVELWHRDAEH-WARL--YQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR 113 (148)
T ss_pred EEEEEEhHHHHH-HHHh--cCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCc
Confidence 566665432111 1345 99999999999997653 12 13588999999987653
No 251
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.24 E-value=2e+02 Score=26.47 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=42.5
Q ss_pred CEEEEEEEEeeeecCC---CeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEeeEee
Q 012529 30 LMIVVAGWVRTLRAQS---SVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVP 94 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~---~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~~~~ 94 (461)
.+|-|.|-|.+.-.-| .+.=+.+.|++|. +=|+...-.+ ....++. +..+|.|.|.|++..
T Consensus 46 nRifivGtltek~~i~ed~~~~R~rVvDpTGs--F~Vyag~yqPEa~a~l~~--ve~~~~VaViGKi~~ 110 (196)
T COG3390 46 NRIFIVGTLTEKEGIGEDREYWRIRVVDPTGS--FYVYAGQYQPEAKAFLED--VEVPDLVAVIGKIRT 110 (196)
T ss_pred eEEEEEEEEEeccCcCCcccEEEEEEecCCce--EEEEcCCCChHHHHHHHh--ccCCceEEEecccce
Confidence 5788999998876544 3666788899975 5553322112 2334677 999999999999865
No 252
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=34.22 E-value=1e+02 Score=22.61 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=32.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--c-hhh-hhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G-YDQ-VKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~-~~~-~~~~~l~~g~~V~v~ 89 (461)
.+.|+|.++...| +|+.|.++ +...++.... . ... ... ++.||.|.|.
T Consensus 3 ~v~g~V~~v~~~G--v~V~l~~~-----~~G~v~~s~l~~~~~~~~~~~--~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG--VFVTLGRG-----VDARVRVSELSDSYLKDWKKR--FKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc--EEEEeCCC-----CEEEEEHHHCCchhhcCHhhc--cCCCCEEEEE
Confidence 3789999999877 89999754 4566654321 1 111 223 8889988876
No 253
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=33.65 E-value=85 Score=28.15 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=42.9
Q ss_pred CCCCCCCEEEEEEEEeeeecCCCeEEEEEE----cCccC--------ccEEEEEeCCCcchhhhhhcCCCCCcEEEEEee
Q 012529 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVN----DGSCL--------SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (461)
Q Consensus 24 ~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~----D~s~~--------~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~ 91 (461)
.....|+.|...|.|.++++..+-+.|.|- |.++. +..=+.+ .+|-.-.. ...|-.|+|.|+
T Consensus 29 p~~~~G~~VrwGG~I~~v~n~~~~T~leV~~~PLd~~grP~~~~~s~GRFla~~----~gFLDP~~--y~~Gr~vTV~G~ 102 (160)
T PF03843_consen 29 PDAYQGQQVRWGGVIVNVRNLPDQTELEVVQYPLDSSGRPQTDDPSQGRFLARV----PGFLDPAI--YAPGRLVTVVGT 102 (160)
T ss_pred hhhcCCCEEEECCEEEEEEECCCceEEEEEEccCCCCCCcCCCCCCCCEEEEEe----CCCcCHHH--cCCCCEEEEEEE
Confidence 345789999999999999998777777763 33221 0011111 11211223 678999999999
Q ss_pred EeecCC
Q 012529 92 VVPSQG 97 (461)
Q Consensus 92 ~~~~~~ 97 (461)
+.....
T Consensus 103 v~g~~~ 108 (160)
T PF03843_consen 103 VTGMET 108 (160)
T ss_pred ecceEE
Confidence 976543
No 254
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=32.83 E-value=70 Score=35.15 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecC
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITAS 178 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~ 178 (461)
...+...+|+.|...||.||-|-.|++.
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~ 426 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSH 426 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCCh
Confidence 4566778899999999999999999875
No 255
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=29.32 E-value=1.2e+02 Score=27.78 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=28.8
Q ss_pred CCCCcEEEEEeeEeecC---CCC--ccEEEEEe---EEEEeccCCC
Q 012529 80 ITTGASIWIQGNVVPSQ---GSK--QKVELKVN---KIVLVGKSDP 117 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~---~~~--~~~el~~~---~i~vl~~~~~ 117 (461)
|..||.|.|+|.+.... .++ ...||.|+ ++.+|++...
T Consensus 72 L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~~ 117 (175)
T PRK13732 72 LRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQ 117 (175)
T ss_pred cCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCCCC
Confidence 99999999999997542 121 25788888 8888887654
No 256
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=29.31 E-value=26 Score=37.98 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.8
Q ss_pred CccccccHHHHHHHHcC
Q 012529 426 HAGFGLGFERLVQFATG 442 (461)
Q Consensus 426 ~gG~giGidRLvm~l~g 442 (461)
|.||++|+|||++.|..
T Consensus 442 ~~Gfa~gieRli~~l~e 458 (563)
T TIGR00418 442 HRAILGSIERFIAILLE 458 (563)
T ss_pred EeeccCcHHHHHHHHHH
Confidence 46999999999998864
No 257
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.99 E-value=2.4e+02 Score=20.86 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=30.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--ch-hh-hhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQ-VKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~~-~~-~~~~~l~~g~~V~v~ 89 (461)
.+.|+|.++...| +|++|.+. .+..++..+.. .+ .. -.. ++.||.|.|.
T Consensus 5 ~v~g~V~~i~~~g--~~v~l~~~----~~~g~i~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 57 (77)
T cd05708 5 KIDGTVRRVEDYG--VFIDIDGT----NVSGLCHKSEISDNRVADASKL--FRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEEcce--EEEEECCC----CeEEEEEHHHCCCCccCCHhHe--ecCCCEEEEE
Confidence 3789999998766 89999742 14555553321 11 11 123 7999999876
No 258
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=28.91 E-value=41 Score=32.21 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=41.1
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCcccc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 449 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv 449 (461)
.+--.+|+.++|| ||.- -.+-+| --|++ --|-++-+--|+|||.|.+-|.+||-|+
T Consensus 126 awGlGWEVWldGM-EvTQ-----FTYFQQ-----vGGie-------------c~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 126 AWGLGWEVWLDGM-EVTQ-----FTYFQQ-----VGGLE-------------CKPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred ccccceeEEEcCe-eeee-----eehhhh-----hCCee-------------ccceeeeeehhHHHHHHHHhCccceeEE
Confidence 3456799999998 8752 111111 11222 1245667888999999999999999998
Q ss_pred ccCCC
Q 012529 450 IPFPR 454 (461)
Q Consensus 450 ~~FPr 454 (461)
..=..
T Consensus 182 ~W~~~ 186 (298)
T COG0752 182 EWNDG 186 (298)
T ss_pred eecCC
Confidence 76443
No 259
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=28.59 E-value=46 Score=34.43 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=32.2
Q ss_pred ccccccCCc---eeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 374 AMDMLVPRI---GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 374 ~fdl~~~G~---~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
.|+.+.++. +-|++|+ ||+.+..++.. ...|..||++|+|||+.++...
T Consensus 263 vFe~~~~~~g~~~~i~~GG----RYD~L~~~f~~-----------------~~~pavGfs~~le~l~~~l~~~ 314 (412)
T PRK00037 263 VFEFVTDDLGAQGTVCGGG----RYDGLVEQFGG-----------------PPTPAVGFAIGVERLLLLLEEL 314 (412)
T ss_pred EEEEEECCCCccceeeecc----chhHHHHHhCC-----------------CCCceEEEEEcHHHHHHHHHhc
Confidence 377777653 3577776 45555444321 1347779999999999888643
No 260
>PRK06386 replication factor A; Reviewed
Probab=27.77 E-value=4.1e+02 Score=27.23 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=49.2
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeeee-----cC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCc
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R-----~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (461)
.|+||.+ .++.|+|.|+|-++- .. ..+.=-.|-|.||. |..++.... .. |..|+
T Consensus 4 kI~DI~~--------~~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG~--I~fT~W~~~------~~--l~~Gd 65 (358)
T PRK06386 4 KISDINA--------ARQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETGT--VPFTAWEFP------DA--VKSGD 65 (358)
T ss_pred chhhcCC--------CCCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcce--EEEEecCCc------cc--CCCCC
Confidence 4666664 345688888887543 11 22333457888864 888776532 24 89999
Q ss_pred EEEEEeeEeecCCCCccEEEEEeE
Q 012529 85 SIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 85 ~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
+|.+.+-....-.+ ..+|.+.+
T Consensus 66 ~v~i~na~v~~~~G--~~~Lnv~~ 87 (358)
T PRK06386 66 VIEIKYCYSKEYNG--KIRIYFDS 87 (358)
T ss_pred EEEEEeEEEeeECC--EEEEEEcC
Confidence 99999877665433 57888853
No 261
>PRK08059 general stress protein 13; Validated
Probab=27.74 E-value=2.4e+02 Score=23.81 Aligned_cols=65 Identities=18% Similarity=0.392 Sum_probs=37.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--ch-hh-hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~~-~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
.+.|.|.++...| +|++|.++ ++.++..+.. .+ .. -.. ++.||.|.|. +.......+.+.+.+..
T Consensus 10 iv~G~V~~i~~~G--~fV~i~~~-----~~Gli~~sel~~~~~~~~~~~--~~vGD~I~vk--I~~id~~~~~i~lslk~ 78 (123)
T PRK08059 10 VVTGKVTGIQPYG--AFVALDEE-----TQGLVHISEITHGFVKDIHDF--LSVGDEVKVK--VLSVDEEKGKISLSIRA 78 (123)
T ss_pred EEEEEEEEEecce--EEEEECCC-----CEEEEEHHHCCcccccCHHHc--CCCCCEEEEE--EEEEECCCCeEEEEEEE
Confidence 4689999998876 89999654 4555544321 11 11 123 7999999986 33322222345555433
No 262
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=26.83 E-value=86 Score=35.70 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecC
Q 012529 152 NALAYATHKFFQENGFIWISSPIITAS 178 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~ 178 (461)
..+.+.+|++|...||.|+-|-.+++.
T Consensus 490 ~~~~~~ir~~L~~~Gf~Ev~tysf~~~ 516 (791)
T PRK00629 490 QRLLRRLRRALAALGYQEVITYSFVSP 516 (791)
T ss_pred HHHHHHHHHHHHHCCCcEEeccccCCH
Confidence 345567899999999999999999875
No 263
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=26.69 E-value=55 Score=34.11 Aligned_cols=50 Identities=14% Similarity=0.331 Sum_probs=32.6
Q ss_pred ccccccCC--c-eeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcC
Q 012529 374 AMDMLVPR--I-GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 374 ~fdl~~~G--~-~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g 442 (461)
-|+.+.++ . +.|++|+ |||.|...+...+ .-.|..||++|+|||+..+..
T Consensus 279 vFe~~~~~~~~~~~i~~GG----RYD~L~~~f~~~~---------------~~~pAvGfa~~~~~l~~~l~~ 331 (423)
T PRK12420 279 VYEIFLKDGSITSSIGSGG----RYDNIIGAFRGDD---------------MNYPTVGISFGLDVIYTALSQ 331 (423)
T ss_pred EEEEEecCCCccccccCCc----cHHHHHHHhCCCC---------------CCCCceeEEEcHHHHHHHHHh
Confidence 47887764 2 2578887 5565554442111 024789999999999988864
No 264
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=26.37 E-value=1.6e+02 Score=21.90 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=32.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch----hhhhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY----DQVKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~----~~~~~~~l~~g~~V~v~ 89 (461)
.+.|+|.++...| +|++|.++ +...++.+.... ..... +..|+.|.|.
T Consensus 7 iv~g~V~~v~~~g--~~V~l~~~-----~~g~ip~~~l~~~~~~~~~~~--~~~G~~v~v~ 58 (74)
T PF00575_consen 7 IVEGKVTSVEDFG--VFVDLGNG-----IEGFIPISELSDDRIDDPSEV--YKIGQTVRVK 58 (74)
T ss_dssp EEEEEEEEEETTE--EEEEESTS-----SEEEEEGGGSSSSEESSSHGT--CETTCEEEEE
T ss_pred EEEEEEEEEECCE--EEEEECCc-----EEEEEEeehhcCccccccccc--cCCCCEEEEE
Confidence 3589999988755 89999733 567777654321 11234 8889988776
No 265
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=26.18 E-value=1.1e+02 Score=27.95 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=31.6
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC----CC--ccEEEEEe---EEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----SK--QKVELKVN---KIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~----~~--~~~el~~~---~i~vl~~~ 115 (461)
+.|++-.+.... ..+. |+.||.|.|+|.+....- ++ ..+||.+. ++..|++.
T Consensus 56 ~~V~~fgk~Ae~-~~~~--L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 56 HRVVLFGKLAEV-AGEY--LRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred EEEEEehhHHHH-HHHh--cCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 455554432111 1345 999999999999976532 11 24677665 67776654
No 266
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=26.03 E-value=27 Score=40.19 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=24.8
Q ss_pred CCccccccHHHHHHHHcCCCCccccccCC
Q 012529 425 PHAGFGLGFERLVQFATGVENIRDAIPFP 453 (461)
Q Consensus 425 P~gG~giGidRLvm~l~g~~~Irdv~~FP 453 (461)
++-=-|+|+|||++.+-|.+++=|+ .|+
T Consensus 235 k~VDTG~GLER~~~v~qg~~t~ydt-~f~ 262 (902)
T TIGR03683 235 KIVDTGYGLERFVWASQGTPTAYDA-IFP 262 (902)
T ss_pred CceecCCCHHHHHHHHcCCCchHHH-HHH
Confidence 5667899999999999999999998 665
No 267
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=25.78 E-value=57 Score=22.76 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCcccHHHHHHHhccCCCCC
Q 012529 398 LEGRLDELKLNRDSYWWYLDLRHYGSVPH 426 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~yl~a~~~G~pP~ 426 (461)
++.++..+-..+.-+..|++..|-|.||.
T Consensus 3 iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e 31 (45)
T PF03790_consen 3 IKAKIASHPLYPRLLAAYIDCQKVGAPPE 31 (45)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhcCCCHH
Confidence 34445555556666788999999999984
No 268
>PTZ00148 40S ribosomal protein S8; Provisional
Probab=25.18 E-value=1e+02 Score=28.68 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=33.4
Q ss_pred EEeeeecCC-C-------eEEEEEEcCccC-----ccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEee
Q 012529 37 WVRTLRAQS-S-------VTFIEVNDGSCL-----SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (461)
Q Consensus 37 ~v~~~R~~~-~-------~~Fi~l~D~s~~-----~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~ 94 (461)
+|+.+|..| + +-+..+.|++.. .-+.||.++...+|..-+. |..|++|.+....++
T Consensus 42 ri~~VR~RGGN~K~Ralr~~~gNv~~~se~~tkk~kIl~Vv~N~sNne~vRrni--itKGAII~tda~Pfr 110 (205)
T PTZ00148 42 RVRPVRCRGGNFKFRALRLDTGNFSWGSQGIAKKTRILDVVYNASNNELVRTKT--LVKNAIVQIDAAPFK 110 (205)
T ss_pred EEEEEEccCCceeeEEEeecceEEeecCCCeEEeeEEEEEEecCcCHHHHhhcc--eeeceEEeeccchHH
Confidence 666777763 3 444455554421 1156777766665644334 888999888866654
No 269
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=25.00 E-value=1.8e+02 Score=20.88 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=30.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--c-hhhh-hhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G-YDQV-KSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~-~~~~-~~~~l~~g~~V~v~ 89 (461)
.+.|.|..+...| +|++|.++ +...+..... . +... +. ++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~v~l~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG--AFVEILPG-----KDGLVHISELSDERVEKVEDV--LKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE--EEEEeCCC-----CEEEEEhHHcCCccccCHHHc--cCCCCEEEEE
Confidence 3689999998866 89999754 3455554321 1 1111 23 7889998886
No 270
>PLN02530 histidine-tRNA ligase
Probab=24.51 E-value=60 Score=34.62 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=15.0
Q ss_pred CCCccccccHHHHHHHHc
Q 012529 424 VPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 424 pP~gG~giGidRLvm~l~ 441 (461)
.|..|||+|++||+.++-
T Consensus 373 ~pAvGFa~g~~~l~~~l~ 390 (487)
T PLN02530 373 TPACGFGFGDAVIVELLK 390 (487)
T ss_pred CCeeEEEEhHHHHHHHHH
Confidence 488999999999887764
No 271
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=24.36 E-value=1.6e+02 Score=21.79 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEcC
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDG 55 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~ 55 (461)
.+.|+|.++...| +|+.|.++
T Consensus 6 ~~~g~V~~i~~~G--~fv~l~~~ 26 (72)
T cd05689 6 RLFGKVTNLTDYG--CFVELEEG 26 (72)
T ss_pred EEEEEEEEEEeeE--EEEEcCCC
Confidence 4789999999887 89999753
No 272
>PRK07252 hypothetical protein; Provisional
Probab=24.26 E-value=4.4e+02 Score=22.28 Aligned_cols=48 Identities=13% Similarity=0.339 Sum_probs=31.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhh-hhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~-~~~~l~~g~~V~v~ 89 (461)
.+.|.|.++...| +||+|..+ +...+..... .+... .. ++.||.|.|.
T Consensus 6 iv~G~V~~V~~~G--~fVei~~~-----~~GllhiseLs~~~~~~~~~~--~~vGD~V~Vk 57 (120)
T PRK07252 6 KLKGTITGIKPYG--AFVALENG-----TTGLIHISEIKTGFIDNIHQL--LKVGEEVLVQ 57 (120)
T ss_pred EEEEEEEEEeCcE--EEEEECCC-----CEEEEEHHHcCCccccChhhc--cCCCCEEEEE
Confidence 3789999999877 89999533 4555554321 12112 23 8999999986
No 273
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=23.99 E-value=2.7e+02 Score=19.79 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=30.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--ch--hhhhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY--DQVKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~~--~~~~~~~l~~g~~V~v~ 89 (461)
.+.|.|..+...| +|+.+.++ .+..+..+.. .+ +.-+. ++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~g--~~v~i~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (69)
T cd05692 3 VVEGTVTRLKPFG--AFVELGGG-----ISGLVHISQIAHKRVKDVKDV--LKEGDKVKVK 54 (69)
T ss_pred EEEEEEEEEEeee--EEEEECCC-----CEEEEEhHHcCCcccCCHHHc--cCCCCEEEEE
Confidence 3678888888765 88888644 4556654321 11 11123 7999999876
No 274
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=23.71 E-value=47 Score=31.69 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.9
Q ss_pred CC-CCccccccHHHHHHHHcC
Q 012529 423 SV-PHAGFGLGFERLVQFATG 442 (461)
Q Consensus 423 ~p-P~gG~giGidRLvm~l~g 442 (461)
+| ++-.-|+|+|||++.+-|
T Consensus 211 Lp~k~IDTGmGlERla~vlQg 231 (232)
T cd00673 211 LPKKIVDTGMGLERLVWVLQG 231 (232)
T ss_pred CCCCeeeCCcCHHHHHHHHcC
Confidence 44 688899999999999866
No 275
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=23.55 E-value=33 Score=39.51 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.8
Q ss_pred CC-CCccccccHHHHHHHHcCCCCccccccCC
Q 012529 423 SV-PHAGFGLGFERLVQFATGVENIRDAIPFP 453 (461)
Q Consensus 423 ~p-P~gG~giGidRLvm~l~g~~~Irdv~~FP 453 (461)
+| ++---|+|+|||++++-|.+++=|+ .|+
T Consensus 228 Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~ 258 (900)
T PRK13902 228 MPLKIVDTGYGLERIAWASQGTPTAYDA-IFG 258 (900)
T ss_pred CCCCeeeCCcCHHHHHHHHcCCCchHHH-HHH
Confidence 44 5777899999999999999999998 665
No 276
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=23.50 E-value=74 Score=25.97 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=34.8
Q ss_pred EEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeE-eecCCCCccEEEEEeEEEEe
Q 012529 50 IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNV-VPSQGSKQKVELKVNKIVLV 112 (461)
Q Consensus 50 i~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~-~~~~~~~~~~el~~~~i~vl 112 (461)
+.|+||.. .+|.++..+...+ +..+.|+.|++|.+.=.. ...+.+ --|.+.+++|+
T Consensus 40 i~lSDG~~--~~~amLatqln~~--v~~g~l~~~sIirl~~y~~~~i~~k---~viiIldlevl 96 (97)
T cd04477 40 ILLSDGVY--YVQAMLATQLNPL--VESGQLQRGSIIRLKRFICNVIKGK---RILIILDLEVV 96 (97)
T ss_pred EEEEChhH--HHHHHHhhhhhhH--HhcCCccCCcEEEECeEEEEEecCc---EEEEEEeeEEe
Confidence 78999985 4798887654332 334559999999995222 221211 24566677765
No 277
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=23.39 E-value=3.9e+02 Score=23.02 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=42.3
Q ss_pred CCCCEEEEEEEEeeeec----CC--CeEEEEEEcCccC--ccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec
Q 012529 27 RVGLMIVVAGWVRTLRA----QS--SVTFIEVNDGSCL--SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~----~~--~~~Fi~l~D~s~~--~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~ 95 (461)
..++.|.|.|=|..... .| -.+-+.|.|.|+. ..|.|.+-.... +.+.. +..||+|.+.+.-...
T Consensus 12 ~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~--~~LP~--v~~GDVIll~~~kv~~ 84 (138)
T cd04497 12 ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE--ESLPI--VKVGDIILLRRVKIQS 84 (138)
T ss_pred ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCCh--hhCCC--CCCCCEEEEEEEEEEE
Confidence 35778888888887644 22 3445678898872 467776654431 22445 7899999999854443
No 278
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=23.24 E-value=52 Score=36.02 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCC-CC-----CCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASD-CE-----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGP 225 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~e-----g~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~ 225 (461)
++|-+.+-+||.++|...|.+-.|.+.. +. ++-.+|+ +++.. .. .....|+=..-+
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk-~~f~G------~~-----------~p~~~r~~~~Qk 65 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLV-PYLLG------EP-----------HPSGTRLVDVQK 65 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhh-HHhcC------CC-----------CCCCCCcccccc
Confidence 4566778899999999999877777632 11 1122232 12210 00 001345666678
Q ss_pred cccc---CCCCCCCCccccccceeeeccCCH
Q 012529 226 TFRA---ENSNTSRHLAEFWMIEPELAFADL 253 (461)
Q Consensus 226 ~FR~---E~~~t~rHl~EFtmlE~e~a~~d~ 253 (461)
|.|. |+.-+.||+.=|-||-= .+|.||
T Consensus 66 CiR~~Dle~VG~~rHhTfFEMlGn-fSfgdY 95 (594)
T PRK01584 66 CLRTGDIDEVGDLSHLTFFEMLGN-WSLGAY 95 (594)
T ss_pred ccccccccccCCCcchhHHHhhcc-ccHhhh
Confidence 9996 33336899888888642 345565
No 279
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.14 E-value=65 Score=33.95 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHh-hhCCcEEEecceeecCCC
Q 012529 149 RVRNALAYATHKFF-QENGFIWISSPIITASDC 180 (461)
Q Consensus 149 ~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~ 180 (461)
-+++.|++..|+.| .+.+.+||++|+|++.+.
T Consensus 47 alk~Nil~~WRkhFilEE~MlEvdct~ltP~~V 79 (599)
T KOG2298|consen 47 ALKSNILSLWRKHFILEEDMLEVDCTMLTPEPV 79 (599)
T ss_pred hhHHhHHHHHHHHHhhhhcceeeccCcCCcHHH
Confidence 35689999999998 789999999999998543
No 280
>PRK05807 hypothetical protein; Provisional
Probab=22.94 E-value=5e+02 Score=22.44 Aligned_cols=65 Identities=15% Similarity=0.351 Sum_probs=38.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--chh-hhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GYD-QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~~~-~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i 109 (461)
.|.|.|..+...| +||.| ++ .+..+..+.. .|. .+. ..++.||.|.|. |..... .+.++|.+..+
T Consensus 8 vv~G~Vt~i~~~G--afV~L-~~-----~~Glvhiseis~~~v~~~~-~~~kvGd~V~Vk--V~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 8 ILEGTVVNITNFG--AFVEV-EG-----KTGLVHISEVADTYVKDIR-EHLKEQDKVKVK--VISIDD-NGKISLSIKQA 75 (136)
T ss_pred EEEEEEEEEECCe--EEEEE-CC-----EEEEEEhhhcccccccCcc-ccCCCCCEEEEE--EEEECC-CCcEEEEEEec
Confidence 4689999988776 89999 43 3555654432 121 121 228999999876 333222 23566666543
No 281
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=22.77 E-value=1.5e+02 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=26.9
Q ss_pred CCCCcEEEEEeeEeecCC---CC--ccEEEEEe---EEEEeccC
Q 012529 80 ITTGASIWIQGNVVPSQG---SK--QKVELKVN---KIVLVGKS 115 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~~---~~--~~~el~~~---~i~vl~~~ 115 (461)
|+.|+.|.|+|.+....- +. ..+||.|+ .+.+|+..
T Consensus 71 l~KGs~V~VeGrLr~~~y~kdG~~r~~~eVvvd~~g~v~~L~~~ 114 (172)
T PRK05733 71 LRKGSQVYIEGKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGR 114 (172)
T ss_pred hCCCCEEEEEEEEEeCcEecCCEEEEEEEEEEeecCeEEECcCC
Confidence 999999999999976532 21 24788887 78888743
No 282
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=22.68 E-value=3.2e+02 Score=25.13 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCCCCEEEEEEEEeeeecCCCeEEEEE
Q 012529 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEV 52 (461)
Q Consensus 25 ~~~~~~~v~v~G~v~~~R~~~~~~Fi~l 52 (461)
....|+.|++.|.|.++++.++-+-++|
T Consensus 44 ~~y~G~~Vr~GG~I~~v~N~~~~T~lEV 71 (182)
T TIGR00752 44 LLYVGQTARFGGKVVNVTNLANQTKLEI 71 (182)
T ss_pred hhcCCCEEEECCEEEEEEECCCceEEEE
Confidence 4468999999999999999876666665
No 283
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=22.55 E-value=94 Score=22.57 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=17.7
Q ss_pred HHcCCCcccH-HHHHHHhccCCCCC
Q 012529 403 DELKLNRDSY-WWYLDLRHYGSVPH 426 (461)
Q Consensus 403 ~~~~~~~~~~-~~yl~a~~~G~pP~ 426 (461)
+.+|+.+.+. -|...+.++|.||.
T Consensus 15 ~ALG~~~~~pPPWl~~Mq~~G~PPs 39 (54)
T smart00581 15 EALGLPPGQPPPWLYRMRRLGYPPG 39 (54)
T ss_pred HHcCCCCCCCChHHHHHHHHCCCCC
Confidence 3567765543 78889999999984
No 284
>PF12109 CXCR4_N: CXCR4 Chemokine receptor N terminal; InterPro: IPR022726 This entry represents the N-terminal region of the CXC type 4 chemokine receptor. CXCR4 and its ligand stromal cell-derived factor-1 (a.k.a. CXCL12) are essential for proper fetal development. CXCR4 is also the major coreceptor for T-tropic strains of Human immunodeficiency virus 1, and SDF-1 inhibits HIV-1 infection. Additionally, SDF-1 and CXCR4 mediate cancer cell migration and metastasis. The N-terminal domain of most chemokine receptors is the ligand binding domain and so the N-terminal domain of CXCR4 is the binding site for SDF-1 [].; PDB: 3OE9_B 3OE0_A 3ODU_A 2K03_D 3OE8_A 2K05_D 3OE6_A 2K04_B.
Probab=22.23 E-value=32 Score=22.08 Aligned_cols=10 Identities=50% Similarity=0.956 Sum_probs=5.2
Q ss_pred ecccccCCCC
Q 012529 224 GPTFRAENSN 233 (461)
Q Consensus 224 ~~~FR~E~~~ 233 (461)
-||||.|+.+
T Consensus 21 EpCf~~eNad 30 (33)
T PF12109_consen 21 EPCFREENAD 30 (33)
T ss_dssp S--SS-SSSS
T ss_pred Cccccccccc
Confidence 4899998774
No 285
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=22.12 E-value=1.7e+02 Score=24.15 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=35.2
Q ss_pred EEEeeeec----CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEe
Q 012529 36 GWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (461)
Q Consensus 36 G~v~~~R~----~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G 90 (461)
-.|.+|+. .+...-++|.||-.. |++.++.... +.++.+.|..|+-+.|.|
T Consensus 7 L~Vs~I~~~~~~~~~~~~lEltDGWYs--i~a~lD~~L~--~~l~~gkl~vGqKL~i~G 61 (100)
T cd04493 7 LCVSGINSEERLSPHMPIIELTDGWYS--IRAQLDPPLT--NLVRKGKLRVGQKLRICG 61 (100)
T ss_pred EEEEEEeeccCCCCcccEEEEecCeEE--EEEEeCHHHH--HHHHcCCeecccEEEEEC
Confidence 34555554 345778999999864 8888875432 235555699999998887
No 286
>PRK08582 hypothetical protein; Provisional
Probab=22.06 E-value=2.4e+02 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.382 Sum_probs=30.8
Q ss_pred EEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--ch-hhh-hhcCCCCCcEEEEE
Q 012529 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQV-KSGLITTGASIWIQ 89 (461)
Q Consensus 34 v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~~-~~~-~~~~l~~g~~V~v~ 89 (461)
+.|.|..+...| +||.|-++ +..++..+.. .+ ..+ .. ++.||.|.|.
T Consensus 9 v~G~V~~I~~fG--~fV~L~~~-----~~GlVhiSels~~~v~~~~~~--l~vGD~Vkvk 59 (139)
T PRK08582 9 LQGKVTGITNFG--AFVELPEG-----KTGLVHISEVADNYVKDINDH--LKVGDEVEVK 59 (139)
T ss_pred EEEEEEEEECCe--EEEEECCC-----CEEEEEeeccCcccccccccc--cCCCCEEEEE
Confidence 689999999887 89999654 2344443321 11 111 34 8999999886
No 287
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=21.91 E-value=3.1e+02 Score=19.68 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=35.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
.+.|.|..+...|...++.+.-+.+ ..|-+.++.+. +..+ . |..||-|.+.
T Consensus 6 ~l~g~V~~ie~~g~~~~v~~~~~~~-~~l~a~it~~~--~~~L-~--L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLGSEVEVTLDLGGG-ETLTARITPES--AEEL-G--LKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESSSEEEEEEEETTS-EEEEEEEEHHH--HHHC-T---STT-EEEEE
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEEcHHH--HHHc-C--CCCCCEEEEE
Confidence 5789999999999999999986654 24777776532 2222 3 8899988875
No 288
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.88 E-value=2.2e+02 Score=21.47 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=31.4
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--c---hhh-hhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G---YDQ-VKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~---~~~-~~~~~l~~g~~V~v~ 89 (461)
.|.|.|.++-..| +|+.|.++ |...++.... . .+. .+. ++.|+.|.+.
T Consensus 3 ~V~g~V~~i~~~g--~~V~l~~~-----i~G~i~~~~ls~~~~~~~~~~~~--~~vG~~v~~k 56 (73)
T cd05703 3 EVTGFVNNVSKEF--VWLTISPD-----VKGRIPLLDLSDDVSVLEHPEKK--FPIGQALKAK 56 (73)
T ss_pred EEEEEEEEEeCCE--EEEEeCCC-----cEEEEEHHHcCCccccccCHHHh--CCCCCEEEEE
Confidence 4689999987666 89999654 5666653221 0 111 334 8999988876
No 289
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=21.50 E-value=3.1e+02 Score=21.69 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=32.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch---h---h-hhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---D---Q-VKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~---~---~-~~~~~l~~g~~V~v~ 89 (461)
.+.|.|.++-..-.-+|++|.++ ....+..+...+ . . .+. ++.||.|.|.
T Consensus 10 iy~g~V~~i~~~~~GaFV~l~~g-----~~Gllh~seis~~~~~~v~~~~~~--~~~Gd~v~Vq 66 (88)
T cd04453 10 IYLGRVKKIVPGLQAAFVDIGLG-----KNGFLHLSDILPAYFKKHKKIAKL--LKEGQEILVQ 66 (88)
T ss_pred EEEEEEEEeccCCcEEEEEeCCC-----CEEEEEhHHcCchhccccCCHHHc--CCCCCEEEEE
Confidence 46899998887533599999764 245555443211 0 0 123 8899998886
No 290
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=21.42 E-value=3.3e+02 Score=19.85 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=33.2
Q ss_pred EEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEe
Q 012529 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (461)
Q Consensus 34 v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G 90 (461)
..|.|+.....++.-||.-.|+. -.+.+..+...-..+.. |..|+.|..+=
T Consensus 1 ~~G~V~~~~~~kgyGFI~~~~~~----~diFfh~s~~~~~~~~~--l~~G~~V~F~~ 51 (66)
T PF00313_consen 1 MTGTVKWFDDEKGYGFITSDDGG----EDIFFHISDLSGNGFRS--LKEGDRVEFEV 51 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTSS----SEEEEEGGGBCSSSSTS----TTSEEEEEE
T ss_pred CeEEEEEEECCCCceEEEEcccc----eeEEecccccccccccc--CCCCCEEEEEE
Confidence 36888888888888898887664 26878765421111234 88999998873
No 291
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=21.13 E-value=71 Score=32.83 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=29.8
Q ss_pred ccccccCCc--eeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHH
Q 012529 374 AMDMLVPRI--GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 439 (461)
Q Consensus 374 ~fdl~~~G~--~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~ 439 (461)
-|+++.+|. +.|++|+ |||.|...+-. + .-.|..||+||+|||+.+
T Consensus 323 VFe~~~~~~~~~~I~~GG----RYD~Li~~fg~-~---------------~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 323 VFEIRAAGNGDPPLAGGG----RYDGLLTRLGA-G---------------EPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred EEEEEECCCCCCcccCCc----CHHHHHHHhCC-C---------------CCCCeeEEEEcHHHHHhh
Confidence 477777653 3677777 56666554421 0 124788999999998653
No 292
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.96 E-value=3.5e+02 Score=19.93 Aligned_cols=49 Identities=6% Similarity=0.139 Sum_probs=30.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--chhh-hhhcCCCCCcEEEEE
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GYDQ-VKSGLITTGASIWIQ 89 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~~~~-~~~~~l~~g~~V~v~ 89 (461)
.+.|.|..+...| +|+.|..+ ++.++..... ++.. .. ..++.||.|.+.
T Consensus 6 iv~g~V~~v~~~g--i~v~l~~~-----~~g~v~~s~l~~~~~~~~~-~~~~~Gd~v~~~ 57 (73)
T cd05706 6 ILPGRVTKVNDRY--VLVQLGNK-----VTGPSFITDALDDYSEALP-YKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEEeCCe--EEEEeCCC-----cEEEEEhhhccCccccccc-cccCCCCEEEEE
Confidence 3588998887655 88998543 5677765431 2211 11 127889988875
No 293
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=20.43 E-value=1.3e+02 Score=33.82 Aligned_cols=27 Identities=4% Similarity=0.027 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecC
Q 012529 152 NALAYATHKFFQENGFIWISSPIITAS 178 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~ 178 (461)
..+.+.+|+.|...||.|+-|-.+++.
T Consensus 401 ~~~~~~ir~~L~~~Gf~Evitysf~s~ 427 (704)
T CHL00192 401 YNTRDKIRSYLRNLGLTELIHYSLVKQ 427 (704)
T ss_pred HHHHHHHHHHHHhCCCceEecccccCh
Confidence 455677899999999999999999875
No 294
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=20.25 E-value=55 Score=33.48 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=35.3
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
+.|.|-+|||.|.--+..||--+.+--+-.... +.++-..++|.|++..
T Consensus 209 klFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qf 259 (536)
T COG2024 209 KLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259 (536)
T ss_pred eeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHh
Confidence 489999999999776788886665544443332 3677778888888754
Done!