Query 012529
Match_columns 461
No_of_seqs 196 out of 1435
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:12:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nem_A Aspartyl-tRNA synthetas 100.0 2E-103 5E-108 810.7 39.6 425 9-460 2-437 (438)
2 3m4p_A Ehasnrs, asparaginyl-tR 100.0 2E-101 6E-106 799.0 36.4 424 11-460 19-455 (456)
3 1wyd_A Hypothetical aspartyl-t 100.0 1.5E-99 5E-104 780.5 36.1 422 10-460 3-428 (429)
4 2xgt_A Asparaginyl-tRNA synthe 100.0 2.7E-99 9E-104 781.4 34.6 414 27-460 9-434 (435)
5 3i7f_A Aspartyl-tRNA synthetas 100.0 5.8E-99 2E-103 788.3 36.2 427 10-460 49-547 (548)
6 1x54_A Asparaginyl-tRNA synthe 100.0 8.3E-98 3E-102 769.4 34.7 424 10-460 3-433 (434)
7 1n9w_A Aspartyl-tRNA synthetas 100.0 4.1E-98 1E-102 768.4 31.7 411 11-460 2-421 (422)
8 1eov_A ASPRS, aspartyl-tRNA sy 100.0 1.5E-95 5E-100 762.0 36.4 431 10-460 22-486 (487)
9 3bju_A Lysyl-tRNA synthetase; 100.0 1E-94 3.5E-99 759.7 33.4 436 5-458 28-508 (521)
10 4ex5_A Lysine--tRNA ligase; st 100.0 5E-95 1.7E-99 757.8 29.8 427 5-457 58-527 (529)
11 1e1o_A Lysyl-tRNA synthetase, 100.0 3.3E-94 1.1E-98 752.4 31.0 427 5-458 36-503 (504)
12 3a74_A Lysyl-tRNA synthetase; 100.0 6.6E-94 2.3E-98 749.0 30.9 426 5-457 28-492 (493)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 9.1E-93 3.1E-97 752.7 36.5 412 10-460 3-556 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 1.2E-91 4.3E-96 746.3 35.9 434 10-460 2-562 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 5.3E-81 1.8E-85 660.7 31.7 438 1-458 1-571 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 2.3E-71 7.9E-76 555.4 19.9 299 138-456 27-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 5.4E-65 1.8E-69 501.1 20.4 280 133-460 1-292 (294)
18 12as_A Asparagine synthetase; 99.9 3.9E-23 1.3E-27 198.1 16.2 277 147-451 4-315 (330)
19 3qtc_A Pyrrolysyl-tRNA synthet 99.8 5.8E-21 2E-25 187.5 -0.6 167 95-265 20-204 (290)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.6 3.8E-16 1.3E-20 152.6 9.5 60 372-454 218-278 (288)
21 1b7y_A Phers, protein (phenyla 99.4 2.5E-13 8.4E-18 135.6 11.2 111 152-267 104-244 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.2 1.4E-11 4.8E-16 120.7 9.3 111 152-267 56-183 (294)
23 3pco_A Phenylalanyl-tRNA synth 99.0 5.1E-10 1.7E-14 110.4 8.1 108 152-267 110-234 (327)
24 3l4g_A Phenylalanyl-tRNA synth 98.8 5.3E-09 1.8E-13 108.4 8.3 44 219-263 349-394 (508)
25 1hc7_A Prolyl-tRNA synthetase; 98.0 1.7E-05 5.9E-10 82.5 10.6 119 145-264 41-179 (477)
26 2dq3_A Seryl-tRNA synthetase; 98.0 1.1E-05 3.6E-10 82.8 8.7 120 145-268 169-307 (425)
27 1z7m_A ATP phosphoribosyltrans 98.0 1.3E-05 4.5E-10 79.9 8.3 104 146-252 34-151 (344)
28 2i4l_A Proline-tRNA ligase; al 98.0 1.3E-05 4.5E-10 83.0 8.5 118 144-263 63-197 (458)
29 1evl_A Threonyl-tRNA synthetas 97.9 1E-05 3.4E-10 82.5 6.1 118 145-267 27-163 (401)
30 3uh0_A Threonyl-tRNA synthetas 97.9 1.4E-05 4.7E-10 82.8 7.0 124 145-270 61-204 (460)
31 1wu7_A Histidyl-tRNA synthetas 97.8 3.4E-05 1.2E-09 79.3 8.9 103 146-252 18-133 (434)
32 2j3l_A Prolyl-tRNA synthetase; 97.8 3.8E-05 1.3E-09 81.8 9.4 116 144-263 43-177 (572)
33 1nj1_A PROR, proline-tRNA synt 97.8 3.4E-05 1.2E-09 80.7 8.9 120 145-266 68-209 (501)
34 1qe0_A Histidyl-tRNA synthetas 97.8 1.6E-05 5.3E-10 81.4 5.8 104 146-252 14-135 (420)
35 1h4v_B Histidyl-tRNA synthetas 97.8 3.1E-05 1.1E-09 79.3 7.5 104 146-252 15-135 (421)
36 3net_A Histidyl-tRNA synthetas 97.8 1.9E-05 6.5E-10 82.0 5.9 105 145-251 23-153 (465)
37 1nyr_A Threonyl-tRNA synthetas 97.8 2.6E-05 8.8E-10 84.3 6.9 121 144-267 267-406 (645)
38 3lss_A Seryl-tRNA synthetase; 97.7 3.5E-05 1.2E-09 79.6 6.6 119 145-267 205-346 (484)
39 1htt_A Histidyl-tRNA synthetas 97.7 3.4E-05 1.2E-09 79.0 6.4 104 146-252 16-135 (423)
40 1nj8_A Proline-tRNA synthetase 97.7 6.3E-05 2.2E-09 77.9 8.2 120 145-265 35-176 (459)
41 3rac_A Histidine-tRNA ligase; 97.7 5.3E-05 1.8E-09 76.3 7.3 103 147-252 36-157 (373)
42 3cmq_A Phenylalanyl-tRNA synth 97.7 0.00012 4.1E-09 74.5 9.9 33 217-250 132-164 (415)
43 4hvc_A Bifunctional glutamate/ 97.7 0.00012 4.2E-09 76.6 10.1 122 145-267 58-200 (519)
44 3od1_A ATP phosphoribosyltrans 97.7 9.1E-05 3.1E-09 75.3 8.7 105 145-252 21-137 (400)
45 1wle_A Seryl-tRNA synthetase; 97.6 0.0002 6.9E-09 74.5 10.8 123 144-268 215-359 (501)
46 1ses_A Seryl-tRNA synthetase; 97.6 0.0002 6.9E-09 73.1 10.6 118 145-267 163-302 (421)
47 3ial_A Prolyl-tRNA synthetase; 97.6 6.8E-05 2.3E-09 78.4 7.1 125 144-268 51-195 (518)
48 3qne_A Seryl-tRNA synthetase, 97.6 8.4E-05 2.9E-09 76.7 6.9 121 145-267 182-323 (485)
49 4e51_A Histidine--tRNA ligase; 97.6 6.7E-05 2.3E-09 77.9 5.9 105 146-252 44-164 (467)
50 4g84_A Histidine--tRNA ligase, 97.5 0.00016 5.4E-09 74.8 8.7 104 145-250 25-138 (464)
51 2dq0_A Seryl-tRNA synthetase; 97.5 6.3E-05 2.1E-09 77.6 5.3 120 145-268 190-328 (455)
52 1qf6_A THRRS, threonyl-tRNA sy 97.5 0.00012 4E-09 79.0 7.4 119 144-267 267-404 (642)
53 3a32_A Probable threonyl-tRNA 97.5 0.00015 5.3E-09 75.2 7.9 116 147-267 48-185 (471)
54 3lc0_A Histidyl-tRNA synthetas 97.5 8.8E-05 3E-09 76.7 5.8 104 146-252 41-157 (456)
55 3vbb_A Seryl-tRNA synthetase, 97.4 0.00052 1.8E-08 71.4 10.3 122 145-267 198-348 (522)
56 2cja_A Seryl-tRNA synthetase; 97.4 0.00037 1.3E-08 72.8 9.2 126 145-271 228-400 (522)
57 4g85_A Histidine-tRNA ligase, 97.4 0.00021 7.2E-09 75.1 7.4 105 144-250 77-191 (517)
58 3err_A Fusion protein of micro 97.4 0.00042 1.4E-08 72.8 9.5 119 145-267 272-411 (536)
59 1ati_A Glycyl-tRNA synthetase; 97.2 0.0014 4.9E-08 68.5 10.6 34 146-179 37-72 (505)
60 1usy_A ATP phosphoribosyltrans 97.0 0.00043 1.5E-08 66.7 4.7 86 158-252 12-101 (275)
61 3mf2_A BLL0957 protein; aminoa 96.9 0.0014 4.9E-08 64.4 7.0 123 145-269 61-219 (346)
62 3kdf_D Replication protein A 3 96.8 0.013 4.3E-07 49.8 11.3 79 30-114 32-111 (132)
63 3kf6_A Protein STN1; OB fold, 96.8 0.014 4.7E-07 51.2 11.7 79 30-114 48-128 (159)
64 4gop_B Putative uncharacterize 96.7 0.013 4.4E-07 50.0 11.1 78 30-114 37-116 (136)
65 3ikl_A DNA polymerase subunit 96.4 0.0063 2.1E-07 62.4 8.2 117 147-269 103-229 (459)
66 3dm3_A Replication factor A; p 96.4 0.035 1.2E-06 45.1 11.1 88 11-117 5-102 (105)
67 3e0e_A Replication protein A; 96.2 0.053 1.8E-06 43.3 11.0 84 12-115 3-96 (97)
68 2du7_A O-phosphoseryl-tRNA syn 96.2 0.0045 1.5E-07 64.5 5.7 49 219-267 219-269 (549)
69 2zt5_A Glycyl-tRNA synthetase; 95.7 0.015 5.3E-07 62.9 7.4 33 145-177 98-131 (693)
70 2k50_A Replication factor A re 95.7 0.036 1.2E-06 45.6 8.1 81 28-115 15-105 (115)
71 1g5h_A Mitochondrial DNA polym 95.5 0.018 6.1E-07 59.3 6.7 121 147-270 61-220 (454)
72 2pi2_A Replication protein A 3 95.2 0.13 4.5E-06 49.0 11.3 79 30-114 72-151 (270)
73 1nnx_A Protein YGIW; structura 95.2 0.062 2.1E-06 43.8 7.5 84 12-114 26-109 (109)
74 3au7_A TIAS, putative uncharac 95.1 0.13 4.3E-06 51.6 11.1 77 28-115 283-362 (402)
75 2du3_A O-phosphoseryl-tRNA syn 94.9 0.02 7E-07 59.6 4.8 48 219-266 207-256 (534)
76 3l4g_B Phenylalanyl-tRNA synth 94.7 0.034 1.2E-06 59.1 6.2 112 152-266 394-521 (589)
77 3kf8_A Protein STN1; OB fold; 94.6 0.24 8.3E-06 45.3 10.5 83 29-115 85-185 (220)
78 2rhq_B Phenylalanyl-tRNA synth 94.4 0.059 2E-06 59.3 7.3 113 151-267 495-632 (795)
79 2odr_B Phosphoseryl-tRNA synth 93.7 0.052 1.8E-06 57.2 4.9 49 219-267 226-276 (648)
80 2odr_A Phosphoseryl-tRNA synth 93.7 0.053 1.8E-06 57.2 4.9 49 219-267 226-276 (665)
81 2odr_D Phosphoseryl-tRNA synth 93.7 0.053 1.8E-06 57.3 4.9 49 219-267 226-276 (685)
82 2kbn_A Conserved protein; nucl 93.6 0.88 3E-05 36.9 11.2 79 29-118 15-97 (109)
83 2odr_C Phosphoseryl-tRNA synth 93.6 0.058 2E-06 57.2 4.9 49 219-267 226-276 (701)
84 3kdf_A Replication protein A 1 93.4 0.38 1.3E-05 40.0 8.8 71 27-115 20-90 (121)
85 3ig2_A Phenylalanyl-tRNA synth 92.9 0.06 2.1E-06 49.4 3.4 113 152-266 7-150 (213)
86 1ynx_A Replication factor-A pr 92.8 0.25 8.5E-06 40.6 6.8 91 12-116 5-110 (114)
87 2k75_A Uncharacterized protein 92.8 1.1 3.7E-05 36.2 10.5 88 13-123 5-101 (106)
88 2pi2_E Replication protein A 1 92.0 0.93 3.2E-05 38.7 9.5 71 27-115 41-111 (142)
89 1o7i_A SSB, SSO2364, single st 92.0 0.73 2.5E-05 37.9 8.7 74 31-116 14-97 (119)
90 4gop_A Putative uncharacterize 91.9 0.3 1E-05 40.1 6.1 68 27-108 16-83 (114)
91 3fhw_A Primosomal replication 91.5 0.48 1.6E-05 39.0 6.9 57 61-121 49-105 (115)
92 3ica_A Phenylalanyl-tRNA synth 90.4 0.19 6.5E-06 46.0 3.9 114 152-267 7-151 (213)
93 1b7y_B Phers, protein (phenyla 89.2 0.38 1.3E-05 52.7 5.7 106 151-267 491-620 (785)
94 1sr3_A APO-CCME; OB fold, beta 87.8 4.5 0.00015 34.1 10.2 76 26-119 25-105 (136)
95 1j6q_A Cytochrome C maturation 86.6 5.6 0.00019 33.5 10.1 76 26-119 29-110 (136)
96 2du3_A O-phosphoseryl-tRNA syn 85.8 0.25 8.6E-06 51.4 1.6 29 421-449 317-346 (534)
97 2hpi_A DNA polymerase III alph 85.5 0.81 2.8E-05 52.2 5.7 80 27-115 1040-1124(1220)
98 3k8a_A Putative primosomal rep 84.0 1.7 5.7E-05 34.9 5.4 47 61-112 55-101 (103)
99 1jmc_A Protein (replication pr 82.8 1.9 6.5E-05 39.9 6.3 92 11-116 8-114 (246)
100 3f1z_A Putative nucleic acid-b 82.1 6 0.0002 30.8 7.6 69 26-96 46-119 (133)
101 3od1_A ATP phosphoribosyltrans 80.8 0.47 1.6E-05 47.8 1.2 48 374-443 282-330 (400)
102 3qtc_A Pyrrolysyl-tRNA synthet 78.6 0.94 3.2E-05 43.4 2.5 30 421-450 247-277 (290)
103 3tqy_A Single-stranded DNA-bin 78.0 10 0.00034 32.8 8.8 52 61-115 58-115 (158)
104 1txy_A Primosomal replication 75.7 6.8 0.00023 31.2 6.5 51 61-114 50-102 (104)
105 4gop_C Putative uncharacterize 74.1 4.5 0.00015 41.0 6.3 91 12-116 4-109 (444)
106 4gs3_A Single-stranded DNA-bin 73.4 28 0.00097 27.9 9.6 78 29-113 11-106 (107)
107 2kct_A Cytochrome C-type bioge 71.9 34 0.0011 26.8 11.3 75 27-117 6-87 (94)
108 3mxn_B RECQ-mediated genome in 70.5 22 0.00074 30.1 8.5 74 29-115 58-131 (150)
109 1v1q_A Primosomal replication 68.8 20 0.0007 29.9 8.1 52 61-115 67-120 (134)
110 2du7_A O-phosphoseryl-tRNA syn 65.8 2.6 8.8E-05 43.9 2.3 26 152-177 60-85 (549)
111 3f2b_A DNA-directed DNA polyme 65.5 38 0.0013 38.1 11.7 82 29-115 17-104 (1041)
112 2k52_A Uncharacterized protein 65.5 15 0.00051 27.4 6.1 51 28-89 5-55 (80)
113 3en2_A Probable primosomal rep 64.5 13 0.00043 29.6 5.7 46 61-110 50-95 (101)
114 2fxq_A Single-strand binding p 61.6 25 0.00086 32.8 8.3 82 30-115 129-230 (264)
115 1se8_A Single-strand binding p 59.0 45 0.0015 31.8 9.6 81 30-114 130-233 (301)
116 3lc0_A Histidyl-tRNA synthetas 56.6 2.5 8.7E-05 43.2 0.3 19 424-442 333-351 (456)
117 2odr_B Phosphoseryl-tRNA synth 56.4 4.9 0.00017 42.4 2.4 26 152-177 68-93 (648)
118 2odr_A Phosphoseryl-tRNA synth 56.0 5 0.00017 42.4 2.4 26 152-177 68-93 (665)
119 2odr_D Phosphoseryl-tRNA synth 55.9 5 0.00017 42.5 2.4 26 152-177 68-93 (685)
120 3rac_A Histidine-tRNA ligase; 55.2 4.9 0.00017 39.9 2.1 46 374-441 318-364 (373)
121 2odr_C Phosphoseryl-tRNA synth 54.9 5.3 0.00018 42.4 2.4 26 152-177 68-93 (701)
122 1z7m_A ATP phosphoribosyltrans 53.1 5.2 0.00018 39.2 1.9 46 374-441 289-335 (344)
123 3vdy_A SSB, single-stranded DN 52.6 17 0.0006 29.2 4.8 52 61-115 52-109 (116)
124 3net_A Histidyl-tRNA synthetas 51.8 4.3 0.00015 41.5 1.1 47 374-442 310-360 (465)
125 3pgz_A Single-stranded DNA-bin 51.8 41 0.0014 29.9 7.4 83 30-115 27-138 (193)
126 1j5w_A Glycyl-tRNA synthetase 47.6 8.4 0.00029 35.9 2.2 57 370-451 134-191 (298)
127 3rf1_A Glycyl-tRNA synthetase 47.0 9.1 0.00031 35.9 2.3 57 370-452 146-204 (311)
128 2khj_A 30S ribosomal protein S 46.5 10 0.00035 30.3 2.4 78 1-89 1-85 (109)
129 1z9f_A Single-strand binding p 45.8 30 0.001 29.5 5.4 83 30-115 17-122 (153)
130 2b29_A Replication protein A 7 44.1 77 0.0026 25.9 7.5 60 50-115 47-108 (123)
131 1gm5_A RECG; helicase, replica 44.1 28 0.00096 37.9 6.1 79 27-113 163-247 (780)
132 2i4l_A Proline-tRNA ligase; al 43.9 5.9 0.0002 40.4 0.6 19 424-442 330-349 (458)
133 4g84_A Histidine--tRNA ligase, 43.8 6.9 0.00024 39.6 1.2 17 425-441 336-352 (464)
134 3ull_A DNA binding protein; DN 43.5 21 0.00073 29.5 4.0 36 80-115 86-127 (132)
135 2vw9_A Single-stranded DNA bin 43.2 22 0.00076 29.5 4.1 52 61-115 51-108 (134)
136 2k4k_A GSP13, general stress p 43.0 46 0.0016 27.3 6.0 51 28-89 7-61 (130)
137 3pco_B Phenylalanyl-tRNA synth 42.6 16 0.00056 39.9 3.9 111 154-267 494-628 (795)
138 1h4v_B Histidyl-tRNA synthetas 41.8 13 0.00046 37.0 2.9 19 425-443 301-319 (421)
139 2j3l_A Prolyl-tRNA synthetase; 39.3 7.6 0.00026 40.7 0.6 19 424-442 435-454 (572)
140 4g85_A Histidine-tRNA ligase, 37.9 12 0.0004 38.7 1.8 18 424-441 388-405 (517)
141 1wu7_A Histidyl-tRNA synthetas 37.9 9.6 0.00033 38.3 1.1 19 425-443 306-324 (434)
142 1wjj_A Hypothetical protein F2 37.6 1.8E+02 0.0063 24.4 10.6 83 13-114 18-119 (145)
143 4e51_A Histidine--tRNA ligase; 37.4 11 0.00037 38.5 1.5 20 424-443 327-346 (467)
144 1htt_A Histidyl-tRNA synthetas 36.4 10 0.00036 37.8 1.1 18 425-442 300-317 (423)
145 2khi_A 30S ribosomal protein S 35.3 57 0.0019 26.1 5.3 52 27-89 29-85 (115)
146 2ztg_A Alanyl-tRNA synthetase; 33.5 9.8 0.00033 41.1 0.3 28 425-453 239-266 (739)
147 3koj_A Uncharacterized protein 31.1 71 0.0024 25.5 5.1 78 30-110 12-107 (108)
148 4dka_C RNA-editing complex pro 30.6 2E+02 0.0068 22.7 8.7 67 29-96 3-77 (105)
149 1yfs_A Alanyl-tRNA synthetase; 30.5 22 0.00076 35.9 2.3 94 152-264 6-115 (465)
150 3ulp_A Single-strand binding p 29.1 54 0.0018 26.6 4.1 52 61-115 56-120 (124)
151 2eqs_A ATP-dependent RNA helic 28.4 1.1E+02 0.0037 23.8 5.7 55 27-89 11-70 (103)
152 1qe0_A Histidyl-tRNA synthetas 27.8 15 0.00052 36.5 0.6 17 425-441 302-318 (420)
153 2a19_A EIF-2- alpha, eukaryoti 27.7 1E+02 0.0034 26.8 5.9 54 28-89 15-71 (175)
154 1kl9_A Eukaryotic translation 26.9 99 0.0034 27.1 5.7 54 28-89 15-71 (182)
155 3hy0_A Alanyl-tRNA synthetase; 25.5 23 0.00079 35.6 1.4 93 152-263 5-113 (441)
156 2zze_A Alanyl-tRNA synthetase; 24.3 18 0.00061 39.1 0.4 28 425-453 245-272 (752)
157 2vl6_A SSO MCM N-TER, minichro 23.3 1.4E+02 0.0049 27.4 6.5 35 80-114 225-267 (268)
158 3eiv_A Single-stranded DNA-bin 23.2 1.2E+02 0.004 27.0 5.5 48 61-111 55-108 (199)
159 3lgj_A Single-stranded DNA-bin 22.5 1.1E+02 0.0039 26.3 5.2 83 30-115 24-135 (169)
160 2cqo_A Nucleolar protein of 40 22.1 64 0.0022 26.1 3.3 53 27-89 21-77 (119)
161 2fxq_A Single-strand binding p 22.1 1.1E+02 0.0037 28.4 5.3 52 61-115 54-110 (264)
162 1nj8_A Proline-tRNA synthetase 21.7 16 0.00054 37.2 -0.7 18 424-442 249-266 (459)
163 1wi5_A RRP5 protein homolog; S 20.8 63 0.0022 25.9 3.0 54 27-89 20-77 (119)
164 1se8_A Single-strand binding p 20.7 1E+02 0.0034 29.3 4.8 52 61-115 54-112 (301)
No 1
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1.5e-103 Score=810.71 Aligned_cols=425 Identities=28% Similarity=0.449 Sum_probs=380.1
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhhhhcCCCCCcE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGAS 85 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~~~~~l~~g~~ 85 (461)
.|+|+|++|.+. +.|++|+|+|||+++|.+||++|++|||++|. ||||++++.. .|+.++. |+.||+
T Consensus 2 ~rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDV 71 (438)
T ss_dssp CCSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCE
T ss_pred ceEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999874 67999999999999999999999999999975 9999998652 3666777 999999
Q ss_pred EEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCccc---CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 012529 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 162 (461)
Q Consensus 86 V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~---~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff 162 (461)
|.|+|+|.++++.++++||++++++|||+|..++|++.+. ++.++++++||||+|++.++++|++||++++++|+||
T Consensus 72 V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~ 151 (438)
T 3nem_A 72 VAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF 151 (438)
T ss_dssp EEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887779999999999999998779988664 6888999999999999999999999999999999999
Q ss_pred hhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccc
Q 012529 163 QENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFW 242 (461)
Q Consensus 163 ~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFt 242 (461)
.++||+||+||+|+++++||+++.|.+++++. ..+|.+||.+.++.+.. +|++||||||||||||+++++|||||||
T Consensus 152 ~~~gF~EVeTPiL~~~~~eg~~~~f~~~~~~~-~~yL~~Spql~~q~l~~--~g~~rvf~i~~~FR~E~~~t~RH~pEFt 228 (438)
T 3nem_A 152 HENGFIEIHTPKIIATATEGGTELFPMKYFEE-DAFLAQSPQLYKQIMMA--SGLDRVYEIAPIFRAEEHNTTRHLNEAW 228 (438)
T ss_dssp HHTTCEECCCCSEESSCSSCSSSCCEEEETTE-EEEECSCSHHHHHHGGG--TTCCEEEEEEEEECCCSSCCTTCCSEEE
T ss_pred HHCCcEEEeCCEEecCCCCCCccceeEeeCCc-cEEEecChHHHHHHHHh--cCCCceEEEcceEECCCCCCccccccee
Confidence 99999999999999999999999999998875 46788888655443332 3699999999999999999999999999
Q ss_pred cceeeeccCC-HHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccc
Q 012529 243 MIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 321 (461)
Q Consensus 243 mlE~e~a~~d-~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~ 321 (461)
|||||++|.| ++|+|+++|+||+++++.+.+.++.++++++.. + ..+..||+|+||.||+++|++.|.+
T Consensus 229 ~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~--------l-~~~~~pf~rity~eai~~l~~~g~~- 298 (438)
T 3nem_A 229 SIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE--------L-EEPKLPFPRVSYDKALEILGDLGKE- 298 (438)
T ss_dssp EEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC--------C-CCCCSSCCEEEHHHHHHHHHHTTCC-
T ss_pred eeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccc--------c-ccCCCCceEEEHHHHHHHHHHcCCC-
Confidence 9999999999 999999999999999999998887666655431 1 1245689999999999999988754
Q ss_pred cccccccccCChHhhhchhhhcc---cCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHH
Q 012529 322 EFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEY 397 (461)
Q Consensus 322 ~~~~~~g~~l~~~~e~~l~e~~~---~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~ 397 (461)
+.||.+++..+|++|.+.+. ..+|+||+|||.+++|||++.++ |+++++|||||++| +||+||++|+||++.
T Consensus 299 ---~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G-~Ei~nG~~el~d~~~ 374 (438)
T 3nem_A 299 ---IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRG-VEISSGGQREHRHDI 374 (438)
T ss_dssp ---CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETT-EEEEEEEEBCCCHHH
T ss_pred ---CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECC-EEEEeCeeecCCHHH
Confidence 46899999999998876542 13899999999999999887765 45689999999999 699999999999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 398 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|.++++++|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 375 l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~~~rl~ 437 (438)
T 3nem_A 375 LVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437 (438)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCCSSCCC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
No 2
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=1.8e-101 Score=798.96 Aligned_cols=424 Identities=28% Similarity=0.488 Sum_probs=361.1
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCC-cchhhhhhcCCCCCcEEEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~v 88 (461)
++.|+++. ++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++. .....+.. |+.||+|.|
T Consensus 19 ~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~V 87 (456)
T 3m4p_A 19 VCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLEI 87 (456)
T ss_dssp CEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEEE
T ss_pred EEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEEE
Confidence 36788883 37899999999999999995 6999999999975 999998743 22223456 999999999
Q ss_pred EeeEeecCCCC--------ccEEEEEeEEEEeccCCCCCCC-CcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHH
Q 012529 89 QGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPI-QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATH 159 (461)
Q Consensus 89 ~G~~~~~~~~~--------~~~el~~~~i~vl~~~~~~~Pl-~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR 159 (461)
+|+|++++.++ +++||+|++++|||+|..++|- ..+.++.++++++||||+|++.++++|++||++++++|
T Consensus 88 ~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR 167 (456)
T 3m4p_A 88 TGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFR 167 (456)
T ss_dssp EEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHH
Confidence 99999887532 6899999999999999743321 12356788899999999999999999999999999999
Q ss_pred HHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcc
Q 012529 160 KFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLA 239 (461)
Q Consensus 160 ~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~ 239 (461)
+||.++||+||+||+|+++++||++++|.+++++. ..+|.+||.+.+..+. ++++||||||||||||+++|+||||
T Consensus 168 ~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~~~~~-~~~L~~SpqL~lq~l~---~g~~rVyeig~~FR~E~~~t~rH~p 243 (456)
T 3m4p_A 168 KYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNE-PAYLTQSSQLYLESVI---ASLGKSFCMLSSYRAEQSRTVRHLA 243 (456)
T ss_dssp HHHHHTTCEECCCCSEEC------CCCCEEEETTE-EEEECSCCHHHHHTTH---HHHSSEEEEEEEECCCSCCCSSCCS
T ss_pred HHHHhCCCEEEeCCeeecCCCCCccccccccccCC-CcccccCHHHHHHHHH---hccCcEEEEEhheecCCCCCCcchH
Confidence 99999999999999999999999999999999876 4678888765544333 2599999999999999999999999
Q ss_pred ccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcc
Q 012529 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK 319 (461)
Q Consensus 240 EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~ 319 (461)
|||||||||+|.|++|+|+++|+||+++++.+.+.+...+..+.. + + ..+..||+|+||.||+++|++.|+
T Consensus 244 EFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~----~----~-~~~~~pf~rity~eAi~~l~~~g~ 314 (456)
T 3m4p_A 244 EYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNP----H----L-KLPTRPFKRMTYADAIKYCNDHGI 314 (456)
T ss_dssp EEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----T----C-CCCCSSCEEEEHHHHHHHHHHHTC
T ss_pred HHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCc----c----c-ccCCCCCeEeeHHHHHHHHHHcCC
Confidence 999999999999999999999999999999998765433322211 0 1 123568999999999999999886
Q ss_pred ccc-ccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHH
Q 012529 320 KFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEY 397 (461)
Q Consensus 320 ~~~-~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~ 397 (461)
+.+ ....||.+++.++|+++.+.+ . +|+||+|||.+++|||++.++ |+.+++|||||++|+|||+||++|+||+++
T Consensus 315 ~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~ 392 (456)
T 3m4p_A 315 LNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDE 392 (456)
T ss_dssp CSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHH
T ss_pred CccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHH
Confidence 543 235799999999999998865 4 799999999999999987665 446789999999999999999999999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 398 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|.+++++.|++++.++|||++++||+|||||||||||||+|++||++|||||++|||+++||.
T Consensus 393 l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 393 LMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455 (456)
T ss_dssp HHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
No 3
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-99 Score=780.54 Aligned_cols=422 Identities=28% Similarity=0.435 Sum_probs=377.7
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
++++|++|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 56788898763 68999999999999999999999999999975 99999876555666777 9999999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCccc---CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCC
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~---~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~g 166 (461)
|+|.+++++++++||+|++++|||+|..++|++.++ ++.++++++||||+|++.+++++++||++++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988889999999999999997679988775 78899999999999999999999999999999999999999
Q ss_pred cEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcccccccee
Q 012529 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEP 246 (461)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~ 246 (461)
|+||+||+|+++++||++++|.+++++. ..+|.+||...+.. +.++++|||+||||||||++++.||+|||||||+
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~~~~~~-~~~L~~Spql~~~~---~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~ 228 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPVIYFGK-EAFLAQSPQLYKEL---MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDV 228 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEEEETTE-EEEECSCCHHHHHH---HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEE
T ss_pred CEEEECCEEEeeCCCCCceeEEEecCCc-eEEecCCcHHHHHH---HHhCcCceEEEcccccccCCccccccceeeEeee
Confidence 9999999999999999999999988775 46778887654322 2235899999999999999998999999999999
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccc
Q 012529 247 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 326 (461)
Q Consensus 247 e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~ 326 (461)
|++|.|++|+|+++|++++++++.+.+.+..++++.+... . .++.||+++||.||++++++.|.+ ..
T Consensus 229 e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~--------~-~l~~pf~rity~eA~~~~~~~g~~----~~ 295 (429)
T 1wyd_A 229 EMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEP--------P-EVKIPIKRLKYTEAIEILRSKGYN----IK 295 (429)
T ss_dssp EEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCC--------C-CCCSSCEEEEHHHHHHHHHHSSCC----CC
T ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhccccc--------c-cCCCCccEEEHHHHHHHHHhcCCC----cc
Confidence 9999999999999999999999999988777776554311 1 124689999999999999877643 46
Q ss_pred ccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCC-ccceeccccccCCceeeechhhhcccHHHHHHHHHHc
Q 012529 327 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 405 (461)
Q Consensus 327 ~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 405 (461)
||.++...+|++|.+.+.. +|+||+|||.+++|||++.+++ +.++++||||++|+ ||+|||+|+||++.|.++++++
T Consensus 296 ~~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~-Ei~~G~~r~~d~~~q~~rf~~~ 373 (429)
T 1wyd_A 296 FGDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKK 373 (429)
T ss_dssp TTSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHT
T ss_pred cCcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCE-EEEeCeeeeCCHHHHHHHHHHc
Confidence 8999999999999876543 6999999999999998877654 45899999999998 9999999999999999999999
Q ss_pred CCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 406 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 406 ~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+|||++++|.
T Consensus 374 g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~ 428 (429)
T 1wyd_A 374 GLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT 428 (429)
T ss_dssp TCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBCC
T ss_pred CCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999986
No 4
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=2.7e-99 Score=781.40 Aligned_cols=414 Identities=27% Similarity=0.516 Sum_probs=355.5
Q ss_pred CCCCEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEeeEeecC---CCCcc
Q 012529 27 RVGLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQ---GSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~~~~~~---~~~~~ 101 (461)
+.|++|+|+|||+++|.+ |+++|++|||++|. ||||++++.. .|+.. . |+.||+|.|+|+|++++ +++++
T Consensus 9 ~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G~v~~~~~~~~~~g~ 83 (435)
T 2xgt_A 9 HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYGAIKEVPEGKEAPNG 83 (435)
T ss_dssp GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEEEEEECC------TT
T ss_pred cCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEEEEEecCCCcCCCCc
Confidence 679999999999999999 57999999999985 9999985432 34433 5 99999999999999977 44578
Q ss_pred EEEEEeEEEEeccCCC--CCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC
Q 012529 102 VELKVNKIVLVGKSDP--SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (461)
Q Consensus 102 ~el~~~~i~vl~~~~~--~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~ 179 (461)
+||++++++|||++.+ .+|++.+.++.++++++||||+|++.++++|++||++++++|+||.++||+||+||+|++++
T Consensus 84 ~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~ 163 (435)
T 2xgt_A 84 HELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQ 163 (435)
T ss_dssp EEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC
T ss_pred EEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeecc
Confidence 9999999999998643 26777777888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHH
Q 012529 180 CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 259 (461)
Q Consensus 180 ~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~ 259 (461)
+||++++|.+++++. ..+|.+||.+.+..+. ++++||||||||||||+++++|||||||||||||+|+|++|+|++
T Consensus 164 ~eG~~~~F~~~~~g~-~~~L~~SpqLylq~l~---~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~ 239 (435)
T 2xgt_A 164 VEGGSTLFNLDYFGE-QSFLTQSSQLYLETCI---PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEK 239 (435)
T ss_dssp SSCTTSCCEEEETTE-EEEECSCSHHHHHHHH---HHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHH
T ss_pred CCCchhceeeccCCc-ccccCCChHHHHHHhh---hccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHH
Confidence 999999999998875 4567788764433222 259999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcch--hccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccc--cccccccCChHh
Q 012529 260 ATAYLQYVVRYILDNCKED--MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEH 335 (461)
Q Consensus 260 ~e~li~~i~~~~~~~~~~~--l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~--~~~~g~~l~~~~ 335 (461)
+|+||+++++.+.+.+..+ ++.+.. .+ .....||+|+||.||++++++.+...+. ...||.++...+
T Consensus 240 ~E~li~~~~~~v~~~~~~~~~~~~~~~--------~~-~~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~ 310 (435)
T 2xgt_A 240 IEELVCDTVDRLLADEEAKKLLEHINP--------KF-QPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAA 310 (435)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHST--------TC-CCCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHH
T ss_pred HHHHHHHHHHHHhccccchhhhhhccc--------cc-cccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHH
Confidence 9999999999987654211 111110 00 0123589999999999999887654322 257899999999
Q ss_pred hhchhhhcccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHH
Q 012529 336 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 414 (461)
Q Consensus 336 e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~ 414 (461)
|++|.+.+ . +|+||+|||.+++|||++.++ |+..+++|||+++|+|||+|||+|+||+++|.+++++.|+++++++|
T Consensus 311 e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~ 388 (435)
T 2xgt_A 311 ERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYW 388 (435)
T ss_dssp HHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHH
T ss_pred HHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHH
Confidence 99998765 3 799999999999999988765 45678999999999889999999999999999999999999999999
Q ss_pred HHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 415 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 415 yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
||+|++||+|||||||||+|||+|++||.+||||||+|||++++|.
T Consensus 389 yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr~~~~~~ 434 (435)
T 2xgt_A 389 YLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCV 434 (435)
T ss_dssp HHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBCC
T ss_pred HHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccCCcCCCC
Confidence 9999999999999999999999999999999999999999999985
No 5
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=5.8e-99 Score=788.29 Aligned_cols=427 Identities=25% Similarity=0.363 Sum_probs=349.4
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC----cchhhhhhcCCCCCcE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~----~~~~~~~~~~l~~g~~ 85 (461)
.++.|++|... +.|++|+|+|||+++|.+|+++|++|||++| .||||++++. ..++.++. |+.||+
T Consensus 49 ~~~~i~~l~~~------~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELVPA------MAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAESI 118 (548)
T ss_dssp CBCCGGGCSGG------GTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTEE
T ss_pred ceEEhhhcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCCE
Confidence 44677777753 7899999999999999999999999999997 5999998742 12334567 999999
Q ss_pred EEEEeeEeecCC-----CCccEEEEEeEEEEeccCCCCCCCCccc-----------------------------------
Q 012529 86 IWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR----------------------------------- 125 (461)
Q Consensus 86 V~v~G~~~~~~~-----~~~~~el~~~~i~vl~~~~~~~Pl~~~~----------------------------------- 125 (461)
|.|+|+|++++. +++++||++++|+|||+|..++|++.++
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLT 198 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccc
Confidence 999999999874 3578999999999999998778987421
Q ss_pred -----------------------CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCC
Q 012529 126 -----------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (461)
Q Consensus 126 -----------------------~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg 182 (461)
.+.++..++||||+|++.++++|++||++++++|+||.++||+||+||+|++++|||
T Consensus 199 ~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~eg 278 (548)
T 3i7f_A 199 KRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEG 278 (548)
T ss_dssp --------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC------
T ss_pred cccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCC
Confidence 234555589999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHH
Q 012529 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACAT 261 (461)
Q Consensus 183 ~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e 261 (461)
++++|.|+|++. ..+|.+||.+.++.+. .+|++||||||||||||+++|+|||||||||||||+|. |++++|+++|
T Consensus 279 ga~~F~v~~~~~-~~yL~~Spql~~k~ll--~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E 355 (548)
T 3i7f_A 279 GSNIFEVKYFDR-KAYLAQSPQLYKQMAI--MGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVME 355 (548)
T ss_dssp --------------CCBCSCTHHHHHHHH--TTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHH
T ss_pred CcceeEEecCCC-ceEeccCHHHHHHHHH--hcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHH
Confidence 999999999876 4678888765443332 34699999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhh
Q 012529 262 AYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE 341 (461)
Q Consensus 262 ~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e 341 (461)
+||+++++.+.+.+..+++.+....+.. .+. . .||+++||.||+++|++.|.+ ..|+.+++..+|++|.+
T Consensus 356 ~li~~i~~~~~~~~~~el~~~~~~~~~~---~~~--~-~pf~rit~~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~ 425 (548)
T 3i7f_A 356 KLFTFIFDEIPKRFPDELKVIRKQYPFE---DLI--Y-RPFLRLTYKEAIEMLRASGET----IGDYDDFTTPQEVKLGE 425 (548)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHSCCC---CCC--C-CSCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhcCCcc---ccc--c-CCcceeEHHHHHHHHHHcCCC----CCCccccchHHHHHHHH
Confidence 9999999999888877665543322110 111 1 689999999999999998865 35888999999998764
Q ss_pred h---cccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHH
Q 012529 342 E---AFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 417 (461)
Q Consensus 342 ~---~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~ 417 (461)
. .+...++||+|||.+++|||++.++ |+.+++|||||++| +||+||++|+||++.|++++++.|++++.++|||+
T Consensus 426 ~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~ 504 (548)
T 3i7f_A 426 LIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIE 504 (548)
T ss_dssp HHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 2 2332456789999999999987654 56788999999999 69999999999999999999999999999999999
Q ss_pred HhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 418 a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 505 al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 505 SFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp TTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred HHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999984
No 6
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=8.3e-98 Score=769.41 Aligned_cols=424 Identities=34% Similarity=0.581 Sum_probs=378.4
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (461)
++++|++|... +.|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999763 68999999999999999999999999999975 999997542 23666677 9999999
Q ss_pred EEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCC--CcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 012529 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (461)
Q Consensus 87 ~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl--~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~ 164 (461)
.|+|+|.+++++++++||+|++++|||+| .++|+ +++.++.++++++||||+|++.+++++++||.+++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999 66998 7777899999999999999999999999999999999999999
Q ss_pred CCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccc
Q 012529 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMI 244 (461)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtml 244 (461)
+||+||+||+|+.+++||++++|.+++++. ..+|.+||...+.. +..+++|||+||||||||++++.||+||||||
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~~~~~~-~~~Lr~Spel~~~~---~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtql 227 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKLKYFDK-YAYLSQSAQLYLEA---AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHL 227 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEEEETTE-EEEECSCSHHHHHH---HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEE
T ss_pred CCCEEEeCcEEEeecCCCCceeEEEeecCC-cEEeccChHHHHHH---HhcCccceEEEecceecCCCCCcccccEEEEe
Confidence 999999999999999999999999988765 46677887654322 22358999999999999999989999999999
Q ss_pred eeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc
Q 012529 245 EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 324 (461)
Q Consensus 245 E~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~ 324 (461)
|+|++|.|++|+|+++|++++++++.+.+.+..++++++...+ .++. ++.||+++||.||++++++.|.+
T Consensus 228 e~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~-----~~~~-~~~pf~rity~ea~~~~~~~g~~---- 297 (434)
T 1x54_A 228 ELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLT-----TLKN-TEPPFPRISYDEAIDILQSKGVN---- 297 (434)
T ss_dssp EEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCH-----HHHT-CCSSCCEEEHHHHHHHHHHTTCC----
T ss_pred eEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccc-----cccc-cCCCCcEEEHHHHHHHHHhcCCC----
Confidence 9999999999999999999999999999888878877654321 1211 35699999999999999887743
Q ss_pred ccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCC-ccceeccccccC-CceeeechhhhcccHHHHHHHH
Q 012529 325 VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRL 402 (461)
Q Consensus 325 ~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~-G~~Ei~~g~~r~~~~~~~~~~~ 402 (461)
..||.+++.++|++|.+.+. +|+||+|||.+++|||++.+++ +.++++|||+++ |+|||+|||+|+||++.|.+++
T Consensus 298 ~~~~~dl~~~~e~~l~~~~~--~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf 375 (434)
T 1x54_A 298 VEWGDDLGADEERVLTEEFD--RPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRI 375 (434)
T ss_dssp CCTTCCCCHHHHHHHHTTCS--SCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHH
T ss_pred cccCCccChHHHHHHHHHhC--CcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHH
Confidence 46899999999999987653 6999999999999998876654 458999999999 9999999999999999999999
Q ss_pred HHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 403 DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 403 ~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
+++|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+||+++++|.
T Consensus 376 ~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~ 433 (434)
T 1x54_A 376 LEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433 (434)
T ss_dssp HHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBCC
T ss_pred HHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999985
No 7
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=4.1e-98 Score=768.44 Aligned_cols=411 Identities=25% Similarity=0.386 Sum_probs=313.9
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCC-CCcEEEEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~v~ 89 (461)
+|+|++|. . +.|++|+|+|||+++|.+|+++|++|||++|. ||||+++ +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788887 3 67999999999999999999999999999975 9999985 24 99 99999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCccc----CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhC
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~----~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~ 165 (461)
|+|.+++++++++||+|++++|||+|..++|++.++ ++.++++++||||+|++.+++++++||++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988889999999999999997779988776 7888888999999999999999999999999999999999
Q ss_pred CcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccce
Q 012529 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE 245 (461)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE 245 (461)
||+||+||+|+++++||++++|.+++++. ..+|.+||...+..+. .+++|||+||||||||++++.||+|||||||
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~~~~g~-~~~L~~Spel~~~~l~---~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle 218 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGVDYFEK-RAYLAQSPQLYKQIMV---GVFERVYEVAPVWRMEEHHTSRHLNEYLSLD 218 (422)
T ss_dssp TCEECCCC-----------------------------CHHHHHHHH---HHHSEEEEEEEC-------------CCEEEE
T ss_pred CCEEEECCEEEEeCCCCCceeEEEeeCCC-cEEeeeCHHHHHHHHh---hCCCceeEEeCceECCCCCCCcccceeEEee
Confidence 99999999999999999999999987765 4567778765432222 2589999999999999999889999999999
Q ss_pred eeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc
Q 012529 246 PELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 324 (461)
Q Consensus 246 ~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~ 324 (461)
+|++|. |++|+|+++|+|++++++.+.+.++.++++++... . ....||+++||.||++++++.| .
T Consensus 219 ~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~--------~-~~~~pf~rity~eA~~~~~~~~-----~ 284 (422)
T 1n9w_A 219 VEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW--------P-SFPQDIPRLTHAEAKRILKEEL-----G 284 (422)
T ss_dssp EEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCC--------C-CCSSSCCEEEHHHHHHHHHHTS-----C
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCccc--------c-ccCCCcceeEHHHHHHHHHhcC-----C
Confidence 999999 99999999999999999999888877776654311 0 1115899999999999998766 2
Q ss_pred ccccccCChHhhhchhhhcc---cCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHH
Q 012529 325 VKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 401 (461)
Q Consensus 325 ~~~g~~l~~~~e~~l~e~~~---~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~ 401 (461)
..||.++...+|++|.+.+. ..+|+||+|||..++|||++.++| .++++|||+++|+ ||+|||+|+||++.|+++
T Consensus 285 ~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~fDL~~~G~-Ei~~G~~r~~d~~~q~~r 362 (422)
T 1n9w_A 285 YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSFDLLFRGL-EITSGGQRIHRYEELLES 362 (422)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEEEEEETTE-EEEEEEEBCCCHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEEEEEECCE-EEEeCEeecCCHHHHHHH
Confidence 56898999999988875432 126999999999999999988777 7889999999998 999999999999999999
Q ss_pred HHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 402 LDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 402 ~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
++++|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+|||++++|.
T Consensus 363 f~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~~~~ 421 (422)
T 1n9w_A 363 LKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLT 421 (422)
T ss_dssp HHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC-------
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 8
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=1.5e-95 Score=762.02 Aligned_cols=431 Identities=24% Similarity=0.387 Sum_probs=363.6
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCe-EEEEEEcCccCccEEEEEeCCC------cchhhhhhcCCCC
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLITT 82 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~-~Fi~l~D~s~~~~iQvv~~~~~------~~~~~~~~~~l~~ 82 (461)
.++.|++|... ++.|++|+|+|||+++|.+|++ +|++|||++|. ||||++++. ..++.++. |+.
T Consensus 22 ~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~~~~--l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKANKEGTISKNMVKWAGS--LNL 92 (487)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEE--EEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred ceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCcc--EEEEEeccccccccHHHHHHHhc--CCC
Confidence 34567777642 2679999999999999999997 99999999974 999998651 12445666 999
Q ss_pred CcEEEEEeeEeecCC-----CCccEEEEEeEEEEeccCCCCCCCCccc---------------CChhhhhcCccccCCCH
Q 012529 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRTN 142 (461)
Q Consensus 83 g~~V~v~G~~~~~~~-----~~~~~el~~~~i~vl~~~~~~~Pl~~~~---------------~~~~~~r~~r~l~~R~~ 142 (461)
||+|.|+|+|.+++. +++++||+|++++|||+|..++|++.++ .+.++.+++||||+|++
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~ 172 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSH
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCH
Confidence 999999999999984 3468999999999999998778986542 45677779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEE
Q 012529 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYT 222 (461)
Q Consensus 143 ~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfe 222 (461)
.+++++++||.|++++|+||.++||+||+||+|+++++|+++++|.+++++. ..+|.+||++.++.+. .++++||||
T Consensus 173 ~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~-~~~L~~Spql~~k~l~--~~g~~rvy~ 249 (487)
T 1eov_A 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG-KAYLAQSPQFNKQQLI--VADFERVYE 249 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE-EEEECSCTHHHHHHHH--HTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceeccCCc-cEEcccChHHHHHHHH--hcCCCceEE
Confidence 9999999999999999999999999999999999999999999999988765 4678888765543222 236999999
Q ss_pred EecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCC
Q 012529 223 FGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 301 (461)
Q Consensus 223 I~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 301 (461)
||||||||++++.||+|||||||||++|. +++|+|+++|+||+++++.+.+.+..++..+....... .+....+.+
T Consensus 250 ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~---~~~~~~~~~ 326 (487)
T 1eov_A 250 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVE---EFKLPKDGK 326 (487)
T ss_dssp EEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCC---CCCCCTTCC
T ss_pred EeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCc---ceecccCCC
Confidence 99999999999999999999999999997 69999999999999999999887776654433211110 111011237
Q ss_pred CccccHHHHHHHHHHhcccccccccccccCChHhhhchhhh---cccCCCeeeeeCCccCCcccccc-CCCccceecccc
Q 012529 302 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE---AFGGCPVIVSDYPKEIKAFYMRQ-NDDGRTVAAMDM 377 (461)
Q Consensus 302 ~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~---~~~~~p~~i~~~P~~~~pf~~~~-~~~~~~~~~fdl 377 (461)
|++++|.||++++++.|.+ ..|+.++...+|+.|.+. .+...|+||+|||.+++|||++. ++|+.++++|||
T Consensus 327 ~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL 402 (487)
T 1eov_A 327 MVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDF 402 (487)
T ss_dssp CEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEE
T ss_pred eeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcCCCCCCeEEEEEE
Confidence 8999999999999887754 457778888888887632 23335789999999999997554 445678999999
Q ss_pred ccCCceeeechhhhcccHHHHHHHHHHcCCCcc--cHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCC
Q 012529 378 LVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455 (461)
Q Consensus 378 ~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~--~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~ 455 (461)
+++|+ ||+|||+|+||++.|++++++.|++++ .++|||+|++||+|||||||||||||+|++||.+||||||+|||+
T Consensus 403 ~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~ 481 (487)
T 1eov_A 403 FMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRD 481 (487)
T ss_dssp EETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCB
T ss_pred EeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHheeecCCC
Confidence 99995 999999999999999999999999988 789999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 012529 456 PGSVE 460 (461)
Q Consensus 456 ~~~~~ 460 (461)
++||.
T Consensus 482 ~~r~~ 486 (487)
T 1eov_A 482 PKRLR 486 (487)
T ss_dssp TTBCC
T ss_pred CCCCC
Confidence 99985
No 9
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1e-94 Score=759.74 Aligned_cols=436 Identities=17% Similarity=0.203 Sum_probs=351.6
Q ss_pred CccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCCc----chhhh-
Q 012529 5 VGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV- 75 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~~----~~~~~- 75 (461)
.++|.++++++++.+.+++ +....|++|+|+|||+++|.+| |++|++|||++| .||||++++.. .|..+
T Consensus 28 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~ 105 (521)
T 3bju_A 28 PHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFIHIN 105 (521)
T ss_dssp CSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHHHHH
T ss_pred CCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHHHHH
Confidence 4678999999999764422 2334578999999999999998 999999999996 49999987542 35543
Q ss_pred hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcc-cCChhhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 76 ~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~-~~~~~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
+. |+.||+|.|+|+|.+++++ ++||+|++++|||+|..++|.... ..+.+...++||||+| ++.++++|++||+
T Consensus 106 ~~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~ 181 (521)
T 3bju_A 106 NK--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 181 (521)
T ss_dssp HH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHH
T ss_pred hc--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHH
Confidence 56 9999999999999999865 899999999999999866665433 2456666799999999 7899999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeee--ecCCCcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT--TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~--~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
++++||+||.++||+||+||+|+++++|+++++|.+. +++. ..+|.+||++.++++.. +|++||||||||||||+
T Consensus 182 i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~-~~yL~~SpqL~lk~liv--~g~~rVyeig~~FR~E~ 258 (521)
T 3bju_A 182 IITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDM-NLYMRIAPELYHKMLVV--GGIDRVYEIGRQFRNEG 258 (521)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTE-EEEECSCSHHHHHHHHH--TTCCEEEEEEEEECCSC
T ss_pred HHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCc-ceEeeCCHHHHHHHHHh--cCcCceEEEEcceeCCC
Confidence 9999999999999999999999998877778999653 2332 46788887655544433 36999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
+++ |||||||||||||||+||+|+|+++|+||+++++.+.+.+. +.+.....+. ..+...+..||+++||.||+
T Consensus 259 ~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~--~~~~~~~~d~---~~~~~d~~~pf~rit~~eai 332 (521)
T 3bju_A 259 IDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYK--VTYHPDGPEG---QAYDVDFTPPFRRINMVEEL 332 (521)
T ss_dssp CBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSE--EEECTTCTTS---CCEEEECCSSCEEEEHHHHH
T ss_pred CCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCce--EEeccccccc---ccceeccCCCcccccHHHHH
Confidence 975 99999999999999999999999999999999999987652 2222110000 00011133567777777776
Q ss_pred HHHHHh------------------------cccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCC
Q 012529 312 ELLIKA------------------------KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND 367 (461)
Q Consensus 312 ~~l~~~------------------------~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~ 367 (461)
+.+... +..+.....||..++..+|+++.+.+ . +|+||+|||.+++|||++.++
T Consensus 333 ~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l-~-~P~fI~dyP~~~spla~~~~~ 410 (521)
T 3bju_A 333 EKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC-I-NPTFICDHPQIMSPLAKWHRS 410 (521)
T ss_dssp HHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGC-C-SCEEEECCBGGGCTTBCBCSS
T ss_pred HHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhc-C-CcEEEECCccccCcccccCCC
Confidence 655422 11111223456667777888877755 3 699999999999999988777
Q ss_pred CccceeccccccCCceeeechhhhcccHHHHHHHHHHc------CCCccc--HHHHHHHhccCCCCCccccccHHHHHHH
Q 012529 368 DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQF 439 (461)
Q Consensus 368 ~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~a~~~G~pP~gG~giGidRLvm~ 439 (461)
|+.+++|||||++| +||+||++|+||++.|+++++++ |.+++. ++|||+|++||||||||||||||||+|+
T Consensus 411 dp~~~~rfdL~i~G-~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~yG~PP~gG~GlGiDRLvMl 489 (521)
T 3bju_A 411 KEGLTERFELFVMK-KEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMF 489 (521)
T ss_dssp STTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHHH
T ss_pred CCCeeeeEEEEEcc-eeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHhcCCCCceeEEEcHHHHHHH
Confidence 77899999999999 59999999999999999998654 776665 5999999999999999999999999999
Q ss_pred HcCCCCccccccCCCCCCC
Q 012529 440 ATGVENIRDAIPFPRTPGS 458 (461)
Q Consensus 440 l~g~~~Irdv~~FPr~~~~ 458 (461)
+||++||||||+||+++..
T Consensus 490 ltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 490 LTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HTTCSSGGGSCSSCCCCCC
T ss_pred HhCCCcHHhEecCCCCCCc
Confidence 9999999999999998864
No 10
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=5e-95 Score=757.85 Aligned_cols=427 Identities=20% Similarity=0.266 Sum_probs=343.6
Q ss_pred CccccceeeeccccCCCcCC----CCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhh
Q 012529 5 VGEFRKKLKIVDVKGGPNEG----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKS 77 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~----~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~ 77 (461)
.++|.++|++.++.+.+.+- ....|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 58 p~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~~~ 135 (529)
T 4ex5_A 58 PNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAFKK 135 (529)
T ss_dssp CCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHHHT
T ss_pred CCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhc
Confidence 46889999999999764210 011278999999999999999999999999997 4999998753 23666777
Q ss_pred cCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCCh---hhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 78 ~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~---~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
|+.||+|.|+|+|.+++++ ++||.|++++|||+|. +|+|.+.+++ +...++||||+| ++.++++|++||+
T Consensus 136 --l~~gd~V~V~G~v~~t~~g--elel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~ 209 (529)
T 4ex5_A 136 --WDLGDIVAARGVLFRTNKG--ELSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTK 209 (529)
T ss_dssp --CCTTCEEEEEEEEEECTTS--CEEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHH
T ss_pred --CCCCCEEEEEEEEEEcCCC--cEEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999998865 8999999999999997 5666665543 556689999997 7899999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC--CcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP--SSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~--~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
|+++||+||.++||+||+||+|+++++|+++++|.+ +++. ...+|.+||++.++++.+ +|++||||||||||||+
T Consensus 210 i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t-~~n~~~~~~yL~~SpqLylk~L~v--~G~~rVyeIg~~FR~E~ 286 (529)
T 4ex5_A 210 AIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVT-HHNALDMEMFLRIAPELYLKRLIV--GGFERVFEINRNFRNEG 286 (529)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EETTTTEEEEECSCSHHHHHHHHH--TTCSEEEEEEEEECCSC
T ss_pred HHHHHHHHHHHCCCEEEeCCeeeccCCCCccccccc-ccccCCcceecccCHHHHHHHHHh--cCCCcEEEeehheecCC
Confidence 999999999999999999999998877777799964 3332 245678888765554443 36999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+ ++.+.+... .+..||+||||.||+
T Consensus 287 ~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~i----------d~~~pf~Rity~eAi 353 (529)
T 4ex5_A 287 VS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTA--TIQYQGREL----------DLAQPFHRLTITQAI 353 (529)
T ss_dssp CB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCS--EEEETTEEE----------ETTSCCEEEEHHHHH
T ss_pred CC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcC--ceecCceee----------ccCCCceEEEHHHHH
Confidence 96 79999999999999999999999999999999999998765 233322111 145689999999999
Q ss_pred HHHHH-------------------hcccccccc--cccc-cCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCc
Q 012529 312 ELLIK-------------------AKKKFEFLV--KWGC-DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 369 (461)
Q Consensus 312 ~~l~~-------------------~~~~~~~~~--~~g~-~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~ 369 (461)
+.+.. .|.+++... .|+. ++..+++..++++.+. +|+||+|||.+++|||++.++|+
T Consensus 354 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~-~P~FI~dyP~~~splak~~~~~p 432 (529)
T 4ex5_A 354 QKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLW-EPTFIIDYPIEVSPLARESDTVA 432 (529)
T ss_dssp HHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCC-SCEEEEEEEGGGCTTBCBCSSST
T ss_pred HHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccC-CCEEEECCchhhCCCcccCCCCC
Confidence 87543 122222100 3432 3334444445565665 79999999999999997777777
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHH------cCCCcccH--HHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
.+++|||||++|+ ||+||++|+||++.|.+++.+ .|.+++.+ +|||+|++||||||||||||||||+|++|
T Consensus 433 ~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMllt 511 (529)
T 4ex5_A 433 GITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLT 511 (529)
T ss_dssp TEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHHH
T ss_pred CceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHHc
Confidence 8899999999995 999999999999999888753 24333332 89999999999999999999999999999
Q ss_pred CCCCccccccCCCCCC
Q 012529 442 GVENIRDAIPFPRTPG 457 (461)
Q Consensus 442 g~~~Irdv~~FPr~~~ 457 (461)
|++|||||++||+...
T Consensus 512 g~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 512 DSPTIRDVLLFPHLRR 527 (529)
T ss_dssp TCSSGGGGCSSCCCCC
T ss_pred CCCcHHHeecCCccCC
Confidence 9999999999999764
No 11
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=3.3e-94 Score=752.37 Aligned_cols=427 Identities=19% Similarity=0.281 Sum_probs=342.0
Q ss_pred CccccceeeeccccCCCcCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchh-hhh
Q 012529 5 VGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVK 76 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~----~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~-~~~ 76 (461)
.++|.++|++.++.+.+.+-. ...|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+ .++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 113 (504)
T 1e1o_A 36 PNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGR--IQLYVARDSLPEGVYNDQFK 113 (504)
T ss_dssp CCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSSTTHHHHTGG
T ss_pred CCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCee--EEEEEECCcCCHHHHHHHHh
Confidence 467899999999997642100 012789999999999999999999999999974 999998764 2366 567
Q ss_pred hcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHHH
Q 012529 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRN 152 (461)
Q Consensus 77 ~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~Rs 152 (461)
. |+.||+|.|+|+|.+++++ ++||+|++++|||+|.. |+|.+.++ .+...++||||+| ++.++++|++||
T Consensus 114 ~--l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~--plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs 187 (504)
T 1e1o_A 114 K--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALR--PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRS 187 (504)
T ss_dssp G--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHH
T ss_pred c--CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCC--CCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHH
Confidence 7 9999999999999999875 89999999999999974 44455554 4556689999995 899999999999
Q ss_pred HHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeee--cCCCcccccCCccccCCCccccCcCcceeEEEecccccC
Q 012529 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230 (461)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E 230 (461)
+|++++|+||.++||+||+||+|+++++|+++++|.+.+ ++. ..+|.+||++.++++.. +|++||||||||||||
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~-~~yL~~SpqLylk~L~v--~G~~rVyeIg~~FR~E 264 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDL-DMYLRIAPELYLKRLVV--GGFERVFEINRNFRNE 264 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTE-EEEECSCSHHHHHHHHH--HTCCEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCc-eEEeccCHHHHHHHHhh--cCCCcEEEEcccccCC
Confidence 999999999999999999999999887777789998742 332 45677887655443333 3699999999999999
Q ss_pred CCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHH
Q 012529 231 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 310 (461)
Q Consensus 231 ~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea 310 (461)
+++ .|||||||||||||+|+|++|+|+++|+||+++++.+.+.+. +.+.+.. + -+..||+|+||.||
T Consensus 265 ~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~--i~~~~~~--------i--~~~~pf~rity~eA 331 (504)
T 1e1o_A 265 GIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK--VTYGEHV--------F--DFGKPFEKLTMREA 331 (504)
T ss_dssp CCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSE--EEETTEE--------E--ETTSCCEEEEHHHH
T ss_pred CCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCce--eeeCCEe--------e--ccCCCceEEeHHHH
Confidence 996 599999999999999999999999999999999999988763 4332211 1 13468999999999
Q ss_pred HHHHHH-hcc------------------cccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccc
Q 012529 311 IELLIK-AKK------------------KFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 371 (461)
Q Consensus 311 ~~~l~~-~~~------------------~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~ 371 (461)
++.+.. .+. +++....+|..++..++.++ ++.+. +|+||+|||.+++||+++.++|+.+
T Consensus 332 i~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v-e~~~~-~p~fV~dyP~~~~pf~~~~~~dp~~ 409 (504)
T 1e1o_A 332 IKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVA-EAHLI-QPTFITEYPAEVSPLARRNDVNPEI 409 (504)
T ss_dssp HHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHT-GGGCC-SCEEEECCBGGGCTTBCBCSSCTTB
T ss_pred HHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHh-hccCC-CeEEEECCCcccCcCcCCCCCCCCc
Confidence 987754 221 11100111222333445544 44444 7999999999999999877777788
Q ss_pred eeccccccCCceeeechhhhcccHHHHHHHHHHc-----CCCcccH---HHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 372 ~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-----~~~~~~~---~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
+++|||+++|+ ||+|||+|+||++.|+++++++ ..+++.+ +|||+|++||+|||||||||||||+|+|||.
T Consensus 410 ~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~ 488 (504)
T 1e1o_A 410 TDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNS 488 (504)
T ss_dssp BSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTC
T ss_pred eEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCC
Confidence 99999999997 9999999999999999998753 1234443 9999999999999999999999999999999
Q ss_pred CCccccccCCCCCCC
Q 012529 444 ENIRDAIPFPRTPGS 458 (461)
Q Consensus 444 ~~Irdv~~FPr~~~~ 458 (461)
+||||||+||+++..
T Consensus 489 ~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 489 HTIRDVILFPAMRPQ 503 (504)
T ss_dssp SSGGGTSSSCCCCC-
T ss_pred CcHHhEeccCCCCCC
Confidence 999999999998753
No 12
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=6.6e-94 Score=749.01 Aligned_cols=426 Identities=19% Similarity=0.260 Sum_probs=343.5
Q ss_pred CccccceeeeccccCCCcCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhh
Q 012529 5 VGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKS 77 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~----~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~ 77 (461)
.++|.++|++.++.+.+.+-. ...|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~ 105 (493)
T 3a74_A 28 GKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYELFKI 105 (493)
T ss_dssp CCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHHHHH
T ss_pred CCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHHHhc
Confidence 457899999999997642100 01278999999999999999999999999997 4999998653 23566777
Q ss_pred cCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 78 ~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
|+.||+|.|+|+|.+++++ ++||+|++++|||+|.. |+|.+.++ .+...++||||+| ++.+++++++||+
T Consensus 106 --l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~--plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~ 179 (493)
T 3a74_A 106 --SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALR--PLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSL 179 (493)
T ss_dssp --CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHH
T ss_pred --CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccC--CCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHH
Confidence 9999999999999999875 89999999999999974 45455554 5566699999996 8899999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeee--cCCCcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
|++++|+||.++||+||+||+|+++++|+++++|.+.+ ++. ..+|.+||++.++.+.. +|++||||||||||||+
T Consensus 180 i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~-~~yLr~SpqLylk~l~v--~G~~rVyeig~~FR~E~ 256 (493)
T 3a74_A 180 IIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDM-TLYMRIAIELHLKRLIV--GGLEKVYEIGRVFRNEG 256 (493)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTE-EEEECSCSHHHHHHHHH--TTCCEEEEEEEEECCCC
T ss_pred HHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCc-eeEEecCHHHHHHHHhh--cccCceEEECccccCCC
Confidence 99999999999999999999999887777789998742 332 45677887655433333 36999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
++ .|||||||||||||+|+|++|+|+++|+||+++++.+.+.+. +.+.+.. + -+..||+++||.||+
T Consensus 257 ~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~~~--------i--~~~~pf~rity~eai 323 (493)
T 3a74_A 257 IS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK--IQYGEHL--------V--DLTPEWRRLHMVDAI 323 (493)
T ss_dssp CB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE--EEETTEE--------E--ECCSSCEEEEHHHHH
T ss_pred CC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce--EeeCCEe--------e--ccCCCcceeeHHHHH
Confidence 96 599999999999999999999999999999999999988763 3332210 0 123577777777777
Q ss_pred HHHHH------------------hcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCcccee
Q 012529 312 ELLIK------------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 373 (461)
Q Consensus 312 ~~l~~------------------~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~ 373 (461)
+.+.. .|.+++....||..++..++.++.+ .+. +|+||+|||.+++|||++.++|+.+++
T Consensus 324 ~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~-~~~-~p~fv~dyP~~~~pf~~~~~~dp~~~~ 401 (493)
T 3a74_A 324 KEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVED-KLI-QPTFIYGHPVEISPLAKKNPDDPRFTD 401 (493)
T ss_dssp HHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGG-GCC-SCEEEECCBGGGCTTBCBCSSCTTBBS
T ss_pred HHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhc-ccC-CcEEEECCCcccCCccCcCCCCCCeEE
Confidence 66542 2322221122445555556665544 444 799999999999999987777778899
Q ss_pred ccccccCCceeeechhhhcccHHHHHHHHHHc-----CCCcccH---HHHHHHhccCCCCCccccccHHHHHHHHcCCCC
Q 012529 374 AMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 445 (461)
Q Consensus 374 ~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-----~~~~~~~---~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~ 445 (461)
+|||+++|+ ||+||++|+||++.|+++++++ ..+++.+ +|||+|++||+|||||||||||||+|++||.+|
T Consensus 402 ~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~~ 480 (493)
T 3a74_A 402 RFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGVDRLVMLLTNSPS 480 (493)
T ss_dssp EEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEHHHHHHHHHTCSS
T ss_pred EEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcHHHHHHHHhCCCc
Confidence 999999997 9999999999999999998653 1234433 999999999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 012529 446 IRDAIPFPRTPG 457 (461)
Q Consensus 446 Irdv~~FPr~~~ 457 (461)
|||||+||+.+.
T Consensus 481 IRdVi~FPr~~~ 492 (493)
T 3a74_A 481 IRDVLLFPQMRH 492 (493)
T ss_dssp GGGTSSSCCCCC
T ss_pred HHhEeccCCCCC
Confidence 999999999874
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=9.1e-93 Score=752.70 Aligned_cols=412 Identities=22% Similarity=0.350 Sum_probs=330.0
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
++|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 68899999874 67999999999999999999999999999975 99999876434666677 9999999999
Q ss_pred eeEeecCC-----CCccEEEEEeEEEEeccCCC-CCCCCc------ccCChhhhh-cCccccCCCHHHHHHHHHHHHHHH
Q 012529 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------KRVSREFLR-TKAHLRPRTNTFGAVARVRNALAY 156 (461)
Q Consensus 90 G~~~~~~~-----~~~~~el~~~~i~vl~~~~~-~~Pl~~------~~~~~~~~r-~~r~l~~R~~~~~~~l~~Rs~i~~ 156 (461)
|+|.+++. +++++||+|++++|||+|.+ ++|+.. +....+.+| ++||||+|++.++++|++||++++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999852 35689999999999999974 355644 323334444 999999999999999999999999
Q ss_pred HHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC-Cccc-ccCCccccCCCccccCcCcceeEEEecccccCCCCC
Q 012529 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP-SSRE-AAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNT 234 (461)
Q Consensus 157 ~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-~~~~-~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t 234 (461)
++|+||.++||+||+||+|+++++||+++ |.|.+... ...+ |.+||.+.++.+ +.+|++||||||||||||++++
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~L--mv~G~~rvfqI~~~FR~E~~~~ 229 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRHEPGLFYALPQSPQLFKQML--MVAGLDRYFQIARCFRDEDLRA 229 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTTSTTEEEECCSCSHHHHHHH--HHTTCSEEEEEEEEECCCCCCS
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccccccccCCceeECccCHHHHHHHH--HHhccCCeEEEeceeeCCCCCC
Confidence 99999999999999999999999998765 87754321 1223 666765443322 2346999999999999999986
Q ss_pred CCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHH
Q 012529 235 SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 314 (461)
Q Consensus 235 ~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l 314 (461)
+|| ||||||||||+|+|++|+|+++|+||+++++.+.+.. +..||+|+||.||++.+
T Consensus 230 ~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~----------------------~~~pf~rity~eA~~~~ 286 (580)
T 1l0w_A 230 DRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVE----------------------LPLPFPRLSYEEAMERY 286 (580)
T ss_dssp SCC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC----------------------CCSSCCEEEHHHHHHHH
T ss_pred CcC-CCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCCc----------------------cCCCccEEEHHHHHHHh
Confidence 655 6999999999999999999999999999999986421 12366777777776654
Q ss_pred H-------------------------------------------------------Hhccccccccccccc-CChHhhhc
Q 012529 315 I-------------------------------------------------------KAKKKFEFLVKWGCD-LQSEHERY 338 (461)
Q Consensus 315 ~-------------------------------------------------------~~~~~~~~~~~~g~~-l~~~~e~~ 338 (461)
. +.|.+--..+.|+.+ +.+.++++
T Consensus 287 g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~ 366 (580)
T 1l0w_A 287 GSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKF 366 (580)
T ss_dssp SSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHH
T ss_pred cCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhh
Confidence 1 111000000112322 22222222
Q ss_pred ----------------------------------------------hhhhcccCCCeeeeeCCcc------------CCc
Q 012529 339 ----------------------------------------------LTEEAFGGCPVIVSDYPKE------------IKA 360 (461)
Q Consensus 339 ----------------------------------------------l~e~~~~~~p~~i~~~P~~------------~~p 360 (461)
|+++ . .+|+||+|||.. ++|
T Consensus 367 l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~-~~p~fV~dfP~~~~~~~~~~~~a~~~P 444 (580)
T 1l0w_A 367 LEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-G-FRFLWVVDFPLLEWDEEEEAWTYMHHP 444 (580)
T ss_dssp HGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-S-CCEEEEECCBSBCCCTTTSCCCBSSCT
T ss_pred hhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-c-cCeEEEEcCCcccccccccccccccCC
Confidence 2222 2 379999999996 899
Q ss_pred cccccCC-------Cc-cc-eeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc----HHHHHHHhccCCCCCc
Q 012529 361 FYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHA 427 (461)
Q Consensus 361 f~~~~~~-------~~-~~-~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~a~~~G~pP~g 427 (461)
|||+.++ |+ .. +++|||++||+ ||+|||+|+||++.|+++++.+|+++++ ++|||+|++||+||||
T Consensus 445 Ft~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhg 523 (580)
T 1l0w_A 445 FTSPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHG 523 (580)
T ss_dssp TBCBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEE
T ss_pred ccCCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCc
Confidence 9998765 34 24 78999999997 9999999999999999999999998876 7899999999999999
Q ss_pred cccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 428 GFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 428 G~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|||||||||+|++||.+||||||+||++++.+.
T Consensus 524 G~glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 524 GIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred eEEEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 999999999999999999999999999998764
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=1.2e-91 Score=746.32 Aligned_cols=434 Identities=21% Similarity=0.313 Sum_probs=337.7
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC-cchhhhhhcCCCCCcEEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~v 88 (461)
++|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCee--EEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 57889999874 67999999999999999999999999999975 999997653 23556667 999999999
Q ss_pred EeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCcc-cCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHH
Q 012529 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (461)
Q Consensus 89 ~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~-~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ 160 (461)
+|+|.+++. .++++||+|++++|||+|.+ +|++.. ..+.+..+++||||+|++.++++|++||++++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~~-lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRADV-LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCCS-CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccCC-CCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999865 35789999999999999973 444433 344454459999999999999999999999999999
Q ss_pred HhhhCCcEEEecceeecCCCCCCCcceeeeecCC-Ccc-cccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCc
Q 012529 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIP-SSR-EAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHL 238 (461)
Q Consensus 161 ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-~~~-~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl 238 (461)
||.++||+||+||+|+++++|||++ |.|.+... ... .|.+||.+.++.+ +.+|++||||||||||||+++++||
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~L--mv~G~~rvfqI~~~FR~E~~~t~r~- 226 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLVPSRVHKGKFYALPQSPQLFKQLL--MMSGFDRYYQIVKCFRDEDLRADRQ- 226 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEEECSSSTTCEEECCSCSHHHHHHH--HHTTCCEEEEEEEEECCCCCBTTBC-
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-ceecccccCCceEeCccCHHHHHHHH--HhcCCCceEEEeceeecCCCCCCcC-
Confidence 9999999999999999999998765 88754321 122 3666665433222 2347999999999999999986666
Q ss_pred cccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc---------chhcccccccc-----------------chh--
Q 012529 239 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK---------EDMDFFNTWIE-----------------KGI-- 290 (461)
Q Consensus 239 ~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~---------~~l~~~~~~~~-----------------~~~-- 290 (461)
||||||||||+|+|++|+|+++|+||+++++.+.+.+. +.++.++...+ .++
T Consensus 227 pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~ 306 (585)
T 1c0a_A 227 PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAV 306 (585)
T ss_dssp SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTCSCHH
T ss_pred cccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcCCCccccCCceeEEehhhhccCCcce
Confidence 69999999999999999999999999999999976442 12222211100 000
Q ss_pred -hhhhhh----h-----h-cCCCccccHHHHHHHHHHhcccccccccccc------cCChHhhhc---------------
Q 012529 291 -IDRLST----V-----A-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGC------DLQSEHERY--------------- 338 (461)
Q Consensus 291 -~~~l~~----~-----~-~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~------~l~~~~e~~--------------- 338 (461)
.+.+++ + . +.+|++.+++++.+++++.|.+--..+.|+. ++.+.++++
T Consensus 307 ~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~ 386 (585)
T 1c0a_A 307 FAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAA 386 (585)
T ss_dssp HHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTC
T ss_pred ehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEecccccccccccchhhhhcCHHHHHHHHHHhCC
Confidence 000000 0 0 1236777888888888876532000112332 122222222
Q ss_pred --------------------------------hhhhcccCCCeeeeeCCcc-----------CCccccccCC-------C
Q 012529 339 --------------------------------LTEEAFGGCPVIVSDYPKE-----------IKAFYMRQND-------D 368 (461)
Q Consensus 339 --------------------------------l~e~~~~~~p~~i~~~P~~-----------~~pf~~~~~~-------~ 368 (461)
++++.. .+|+||||||.. ++||||+.++ |
T Consensus 387 ~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~-~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~d 465 (585)
T 1c0a_A 387 QDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESK-WAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAA 465 (585)
T ss_dssp CTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSC-CCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHS
T ss_pred CcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccc-cccEEEEeCCccccccccccccccCCccCCCchhhhhhccC
Confidence 122212 269999999996 8999998765 3
Q ss_pred cc-c-eeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc----HHHHHHHhccCCCCCccccccHHHHHHHHcC
Q 012529 369 GR-T-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 369 ~~-~-~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~a~~~G~pP~gG~giGidRLvm~l~g 442 (461)
+. . +++|||++||+ ||+|||+|+||++.|+++++.+|+++++ ++|||+|++||+|||||||||||||+|+|||
T Consensus 466 p~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvmlltg 544 (585)
T 1c0a_A 466 PENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTG 544 (585)
T ss_dssp CTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHT
T ss_pred CcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHHHHcC
Confidence 42 4 78999999998 9999999999999999999999999876 8999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCC
Q 012529 443 VENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 443 ~~~Irdv~~FPr~~~~~~ 460 (461)
.+||||||+||++++.+.
T Consensus 545 ~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 545 TDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp CSCGGGGSSSCCCTTSCB
T ss_pred CCcHHheecCCCCCCccc
Confidence 999999999999998774
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-81 Score=660.74 Aligned_cols=438 Identities=22% Similarity=0.301 Sum_probs=316.0
Q ss_pred CCCCCccc-cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhhh
Q 012529 1 MGSKVGEF-RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK 76 (461)
Q Consensus 1 ~~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~~ 76 (461)
|-|.+.+| .|+|+|.+|... +.|++|+|+|||+++|.+ +|++|||++|. ||||++++.. .++.++
T Consensus 1 ~~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~ 69 (617)
T 4ah6_A 1 MIPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDGL--VQVIIPQDESAASVKKILC 69 (617)
T ss_dssp --CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSCE--EEEECCCSSSSHHHHHHHH
T ss_pred CCccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHh
Confidence 34555555 567999999875 689999999999999975 59999999974 9999987643 355677
Q ss_pred hcCCCCCcEEEEEeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCcccCC--hhhhh-cCccccCCCHHHHH
Q 012529 77 SGLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--REFLR-TKAHLRPRTNTFGA 146 (461)
Q Consensus 77 ~~~l~~g~~V~v~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~--~~~~r-~~r~l~~R~~~~~~ 146 (461)
. |+.||+|.|+|+|++++. .++++||++++++|||+|. ++|++.+++. .+.+| ++||||+|++.+++
T Consensus 70 ~--l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~ 146 (617)
T 4ah6_A 70 E--APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQY 146 (617)
T ss_dssp H--CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHH
T ss_pred c--CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHH
Confidence 8 999999999999998653 2468999999999999998 7888766543 34445 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-hCCcEEEecceeecCCCCCCCcceeeeecCC-CcccccCCccccCCCccccCcCcceeEEEe
Q 012529 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLIP-SSREAAESPVDAIPKTKDGLIDWSQVYTFG 224 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~ 224 (461)
+|++||++++++|+||. ++||+||+||+|+++++||+. +|.+++... ...+|.+||.+.+..+ +.+|++||||||
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~-~F~v~~~~~g~~~~L~qSpql~kq~l--~v~g~~rvfqi~ 223 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAK-EFLVPSREPGKFYSLPQSPQQFKQLL--MVGGLDRYFQVA 223 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSC-CCEEECSSTTCEEECCSSTTHHHHHH--HHTSCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCc-CceeccccCCcccccccCHHHHHHHH--HhcccCcEEEEE
Confidence 99999999999999996 799999999999998888876 488776432 1235666664332212 234799999999
Q ss_pred cccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC-------------------cchhccc---
Q 012529 225 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-------------------KEDMDFF--- 282 (461)
Q Consensus 225 ~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~-------------------~~~l~~~--- 282 (461)
||||||++++ +|+||||||||||+|+|++|+|+++|+|++++++.+.... ++|+.+-
T Consensus 224 ~~FR~E~~~t-~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei 302 (617)
T 4ah6_A 224 RCYRDEGSRP-DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKI 302 (617)
T ss_dssp EEECCCSSCS-SSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSCCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCE
T ss_pred hheecccCCC-CcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcCccCCCceEeEHHHHHHHHcCCCCccccCccc
Confidence 9999999975 5699999999999999999999999999999986532111 1121110
Q ss_pred ---cccc-cc--hhh-hhhhh---------hhcC--CCccccHHHHHHHHHH----------------------------
Q 012529 283 ---NTWI-EK--GII-DRLST---------VAER--DFVQLSYTDAIELLIK---------------------------- 316 (461)
Q Consensus 283 ---~~~~-~~--~~~-~~l~~---------~~~~--~~~~it~~ea~~~l~~---------------------------- 316 (461)
.... .. .+. ..+.. +.+. .+.|-..++..+..+.
T Consensus 303 ~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee 382 (617)
T 4ah6_A 303 IDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMES 382 (617)
T ss_dssp EECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHH
T ss_pred ccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHH
Confidence 0000 00 000 00000 0000 0111111221111111
Q ss_pred --------hccccccccccccc--------CCh----Hhhhc------hhhhcccCCCeeeeeCCcc-------------
Q 012529 317 --------AKKKFEFLVKWGCD--------LQS----EHERY------LTEEAFGGCPVIVSDYPKE------------- 357 (461)
Q Consensus 317 --------~~~~~~~~~~~g~~--------l~~----~~e~~------l~e~~~~~~p~~i~~~P~~------------- 357 (461)
.+.+-.+.+-++.+ |.. ..+.. |.++- ...++||+|||..
T Consensus 383 ~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~-~~~f~WvvdfPlf~~~~~~~~~~~a~ 461 (617)
T 4ah6_A 383 QRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPT-LFSFLWVVDFPLFLPKEENPRELESA 461 (617)
T ss_dssp HHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTT-SCCEEEEECCBSBCCCSSSSSSCCBS
T ss_pred HHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCC-CeEEEEEeccCCcCCccccccceeec
Confidence 11110000000000 000 00110 11111 1268999999983
Q ss_pred CCccccccCCC-------cc--ceeccccccCCceeeechhhhcccHHHHHHHHH-HcCCCcccHHHHHHHhccCCCCCc
Q 012529 358 IKAFYMRQNDD-------GR--TVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-ELKLNRDSYWWYLDLRHYGSVPHA 427 (461)
Q Consensus 358 ~~pf~~~~~~~-------~~--~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~-~~~~~~~~~~~yl~a~~~G~pP~g 427 (461)
++||+++..+| +. .+.+|||++||+ ||+|||+|+|+++.|+++++ ..|++.+.++|||+|++||+||||
T Consensus 462 HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphg 540 (617)
T 4ah6_A 462 HHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHG 540 (617)
T ss_dssp SCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEE
T ss_pred cCCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCC
Confidence 68999876543 22 357899999996 99999999999999999998 789988889999999999999999
Q ss_pred cccccHHHHHHHHcCCCCccccccCCCCCCC
Q 012529 428 GFGLGFERLVQFATGVENIRDAIPFPRTPGS 458 (461)
Q Consensus 428 G~giGidRLvm~l~g~~~Irdv~~FPr~~~~ 458 (461)
|||+|+|||||+++|.+||||||+||++...
T Consensus 541 G~a~G~dRlvml~~g~~~irdvi~fP~~~~~ 571 (617)
T 4ah6_A 541 GIALGLDRLICLVTGSPSIRDVIAFPKSFRG 571 (617)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGSSSSCCCSSS
T ss_pred ceeecHHHHHHHHcCCCchheEEecCCCCCc
Confidence 9999999999999999999999999998754
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=2.3e-71 Score=555.45 Aligned_cols=299 Identities=18% Similarity=0.166 Sum_probs=229.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCC-CCCcceeeeecCC-----CcccccCCccccCCCcc
Q 012529 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIP-----SSREAAESPVDAIPKTK 211 (461)
Q Consensus 138 ~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~~~F~v~~~~~-----~~~~~~~s~~~~l~~~~ 211 (461)
+.|++ .+++|++||+|+++||+||.++||+||+||+|++++++ +++++|.++|++. ...+|.+||.+.++++.
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 45555 78999999999999999999999999999999998876 4689999988752 24578888765543333
Q ss_pred ccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhh
Q 012529 212 DGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 291 (461)
Q Consensus 212 ~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~ 291 (461)
+ +|++||||||||||||++ +.||||||||||||++|.|++|+|+++|+||+++++. .+|.+.++.
T Consensus 106 ~--~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~------------~~~~rity~ 170 (345)
T 3a5y_A 106 V--AGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------PAAESLSYQ 170 (345)
T ss_dssp H--TTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC------------CCCEEEEHH
T ss_pred H--cCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC------------CCCcEeeHH
Confidence 3 369999999999999999 8999999999999999999999999999999999861 123333444
Q ss_pred hhhhhhhcCCCccccHHHHHHHHHHhccccccccccc-ccCChHhhhchhh---hcc-cCCCeeeeeCCccCCccccccC
Q 012529 292 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLTE---EAF-GGCPVIVSDYPKEIKAFYMRQN 366 (461)
Q Consensus 292 ~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g-~~l~~~~e~~l~e---~~~-~~~p~~i~~~P~~~~pf~~~~~ 366 (461)
+.+++.++.+.+.++++++.+++++.|.. .+.++ .++....|+++.+ +.+ ..+|+||+|||..++||++..+
T Consensus 171 ea~~~~~g~d~~~~~~~~l~~~~~~~g~~---~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~~~~~~ 247 (345)
T 3a5y_A 171 QAFLRYLEIDPLSADKTQLREVAAKLDLS---NVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQIST 247 (345)
T ss_dssp HHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTTBCBCS
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHcCCc---ccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChhhCCCC
Confidence 55555545444455666666666665532 02344 4566667776643 223 2379999999999999986555
Q ss_pred CCccceeccccccCCceeeechhhhcccHHHHHHHHHHc-------CCCcccH-HHHHHHhccCCCCCccccccHHHHHH
Q 012529 367 DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQ 438 (461)
Q Consensus 367 ~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-------~~~~~~~-~~yl~a~~~G~pP~gG~giGidRLvm 438 (461)
+++..+++|||+++|+ ||+||++|+|++++|+++++.. |++++.+ +|||+|++||+|||||||||||||+|
T Consensus 248 ~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLvm 326 (345)
T 3a5y_A 248 EDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVM 326 (345)
T ss_dssp SCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHHH
T ss_pred CCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHHH
Confidence 5556788999999998 9999999999999999999865 8888888 68999999999999999999999999
Q ss_pred HHcCCCCccccccCCCCC
Q 012529 439 FATGVENIRDAIPFPRTP 456 (461)
Q Consensus 439 ~l~g~~~Irdv~~FPr~~ 456 (461)
++||.+||||||+|||+.
T Consensus 327 ll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 327 LALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHTCSSGGGGSSSCTTT
T ss_pred HHcCCCcHheEecCCccc
Confidence 999999999999999984
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=5.4e-65 Score=501.06 Aligned_cols=280 Identities=25% Similarity=0.416 Sum_probs=241.1
Q ss_pred cCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecC--------CCCCCCcceeeeecCCCcccccCCcc
Q 012529 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLIPSSREAAESPV 204 (461)
Q Consensus 133 ~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~--------~~eg~~~~F~v~~~~~~~~~~~~s~~ 204 (461)
+||++|+|++ +++++++||.+++++|+||.++||+||+||+|+.+ .+|| +++|.+++++. ..+|.+||+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~-~~~L~~Spe 77 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGV-KMRLTHSMI 77 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTE-EEEECSCSH
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCC-CEEeccChH
Confidence 4899999999 99999999999999999999999999999999999 8888 88999887765 466777876
Q ss_pred ccCCCccccCcCcceeEEEecccccCC--CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccc
Q 012529 205 DAIPKTKDGLIDWSQVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 282 (461)
Q Consensus 205 ~~l~~~~~~~~~~~rVfeI~~~FR~E~--~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~ 282 (461)
..+..+..+ ++.|||+||||||+|+ +++.||+|||||+|+|++|.|++|+|+++|++++++++.+.+..
T Consensus 78 ~~~~~l~~~--g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~------- 148 (294)
T 1nnh_A 78 LHKQLAIAM--GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT------- 148 (294)
T ss_dssp HHHHHHHHT--TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhhc--CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh-------
Confidence 543333332 5899999999999999 87789999999999999999999999999999999998875411
Q ss_pred cccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccc
Q 012529 283 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 362 (461)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~ 362 (461)
+. .+. .++. |+|++|.||++ + ||. .+|+ ++.. . .|+||+||| +|||
T Consensus 149 ~~--------~i~-~~~~-~~r~~y~ea~~---~----------~g~----~~er--~~~~-~-~P~~v~~~P---~pf~ 194 (294)
T 1nnh_A 149 GR--------EFP-KTKR-FEVFEYSEVLE---E----------FGS----DEKA--SQEM-E-EPFWIINIP---REFY 194 (294)
T ss_dssp SS--------CCC-CCSS-CEEEEHHHHHH---H----------TSS----HHHH--HHHC-S-SCEEEECCC---CCTT
T ss_pred cc--------ccc-cCCC-ceEeEHHHHHH---H----------hCC----hHhh--hhhc-C-CCEEEEcCC---hHHh
Confidence 10 011 1233 89999999985 2 332 3344 3332 3 799999999 9999
Q ss_pred cccCCCccceeccccccC-CceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCC-CCccccccHHHHHHHH
Q 012529 363 MRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFA 440 (461)
Q Consensus 363 ~~~~~~~~~~~~fdl~~~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~p-P~gG~giGidRLvm~l 440 (461)
++. |+..+++||+|++ |++||+||++|+|+++.|.++++..|++++.++|||+|++||+| ||||||||+|||+|++
T Consensus 195 ~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll 272 (294)
T 1nnh_A 195 DRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFI 272 (294)
T ss_dssp BCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHH
T ss_pred CCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHH
Confidence 886 5678999999999 98999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCccccccCCCCCCCCC
Q 012529 441 TGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 441 ~g~~~Irdv~~FPr~~~~~~ 460 (461)
+|.+||||||+|||+++++.
T Consensus 273 ~g~~~Irdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 273 VGAKHIAEVQPFPRIPGIPA 292 (294)
T ss_dssp HTCSSGGGGCSSCCCTTSCC
T ss_pred hCCCCHHHEEeccCCCCccc
Confidence 99999999999999999973
No 18
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.90 E-value=3.9e-23 Score=198.14 Aligned_cols=277 Identities=14% Similarity=0.098 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHhh-----hCCcEEEecceeecCCCC------CCCcceeeeecC--CCcccccCCccccCCCcccc
Q 012529 147 VARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTTLI--PSSREAAESPVDAIPKTKDG 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~--~~~~~~~~s~~~~l~~~~~~ 213 (461)
.++.....|+.+++||. +.|+++|..|+++....+ |..+|-.++... ........|...| ++....
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKW-KR~aL~ 82 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKW-KRQTLG 82 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHH-HHHHHH
Confidence 35667788999999999 899999999999985443 223443333321 1112233444332 111111
Q ss_pred CcCc---ceeEEEecccccCCC-CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccch
Q 012529 214 LIDW---SQVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 289 (461)
Q Consensus 214 ~~~~---~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 289 (461)
..+| +.+|+-+++-|.++. .+.+|.-+|+|+|||......+..|+.++++++.|...+..... .+. ..+
T Consensus 83 ~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~-~~~--~~y---- 155 (330)
T 12as_A 83 QHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEA-AVS--EEF---- 155 (330)
T ss_dssp HTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHH-HHH--HHS----
T ss_pred hCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHH-HHH--HHh----
Confidence 1134 789999999996544 67999999999999999988899999999998888887764321 110 000
Q ss_pred hhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCC---ccccccC
Q 012529 290 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQN 366 (461)
Q Consensus 290 ~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~ 366 (461)
.+.+.+..++..+|.+|+.+. ++..-..+.|..+++.+ .+|||++.|..++ |.-.+..
T Consensus 156 ---~l~p~Lp~~i~fitsqeL~~~-------------YP~lt~keRE~~i~ke~---gaVFii~IG~~L~~g~~HD~RaP 216 (330)
T 12as_A 156 ---GLAPFLPDQIHFVHSQELLSR-------------YPDLDAKGRERAIAKDL---GAVFLVGIGGKLSDGHRHDVRAP 216 (330)
T ss_dssp ---CCCCCSCSSCEEEEHHHHHHH-------------SSSSCHHHHHHHHHHHH---SEEEEECCSSCCSSSCCSSCCCT
T ss_pred ---ccCcCCCCceEEEeHHHHHHH-------------cCCCChHHHHHHHHHhh---CCEEEEecCCccCCCCcCcCcCC
Confidence 111224456777787775543 33333445677777655 5999999997654 2222222
Q ss_pred CCccce---------ecccccc-C----CceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCC-CCCccccc
Q 012529 367 DDGRTV---------AAMDMLV-P----RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS-VPHAGFGL 431 (461)
Q Consensus 367 ~~~~~~---------~~fdl~~-~----G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~-pP~gG~gi 431 (461)
+.+.+. ...||++ + +..||.++++| -+++.+.++++..|.+....-+|.+++..|- |++.|.||
T Consensus 217 DYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~TiGGGI 295 (330)
T 12as_A 217 DYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGI 295 (330)
T ss_dssp TTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEE
T ss_pred CCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccccccc
Confidence 333455 6789998 3 55799999999 7999999999999988777777898877775 99999999
Q ss_pred cHHHHHHHHcCCCCcccccc
Q 012529 432 GFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 432 GidRLvm~l~g~~~Irdv~~ 451 (461)
|.+||||+|++..+|-+|.+
T Consensus 296 GQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 296 GQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp EHHHHHHHHHTCSCGGGTSC
T ss_pred cHHHHHHHHhccchhheeec
Confidence 99999999999999999976
No 19
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.79 E-value=5.8e-21 Score=187.50 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=113.7
Q ss_pred cCCCCccEEEEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCCCHHHHHHHHH-----HHHHHHHHHHHhhhCCcEE
Q 012529 95 SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIW 169 (461)
Q Consensus 95 ~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~-----Rs~i~~~iR~ff~~~gF~E 169 (461)
.+++.+++||+|++++|||+|..++|++.+++ ...+++||||+|++.++++++. ++++.+.+|++|.++||.|
T Consensus 20 ~~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 20 GASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp ----CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 34556789999999999999987789876554 3366899999999999999999 9999999999999999999
Q ss_pred EecceeecCCCC------CCCccee-eeecCCCcccccCCccccCCCccc----cCcCcceeEEEecccccCCCCCCCCc
Q 012529 170 ISSPIITASDCE------GAGEQFC-VTTLIPSSREAAESPVDAIPKTKD----GLIDWSQVYTFGPTFRAENSNTSRHL 238 (461)
Q Consensus 170 V~TPiL~~~~~e------g~~~~F~-v~~~~~~~~~~~~s~~~~l~~~~~----~~~~~~rVfeI~~~FR~E~~~t~rHl 238 (461)
|.||+|++.... .....+. +.+++. ...+..+....+..... ...+..|+||||+|||+|+. +.+|+
T Consensus 98 V~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~~ 175 (290)
T 3qtc_A 98 IKSPILIPLEYIERMGIDNDTELSKQIFRVDK-NFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHL 175 (290)
T ss_dssp ECCCSEEETHHHHHTTCCTTSSGGGGCCEETT-TEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSCC
T ss_pred EECCceeeHHHHHhcCCCcCCchhhhheeeCC-CeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcCc
Confidence 999999986531 1111111 112221 12222221111110000 01245799999999999976 67899
Q ss_pred cccccceeeeccCC--HHHHHHHHHHHHH
Q 012529 239 AEFWMIEPELAFAD--LKDDMACATAYLQ 265 (461)
Q Consensus 239 ~EFtmlE~e~a~~d--~~dlm~~~e~li~ 265 (461)
+||||+|+|+++.+ +.++..+++++++
T Consensus 176 ~Ef~ql~~~~~g~~~~f~elkg~le~ll~ 204 (290)
T 3qtc_A 176 EEFTMLVFWQMGSGCTRENLESIITDFLN 204 (290)
T ss_dssp SEEEEEEEEEESTTCCHHHHHHHHHHHHH
T ss_pred chheEEEEEEEcCChHHHHHHHHHHHHHH
Confidence 99999999999864 6666655555544
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.63 E-value=3.8e-16 Score=152.60 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=48.8
Q ss_pred eeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccC-CCCCccccccHHHHHHHHcCCCCccccc
Q 012529 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAI 450 (461)
Q Consensus 372 ~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G-~pP~gG~giGidRLvm~l~g~~~Irdv~ 450 (461)
..++|++++|. ||++|+.+.+..+. ++| .|||+|||||+|||+|+++|.+|||++.
T Consensus 218 ~~~~~l~~~~~-eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~ 274 (288)
T 3dsq_A 218 GDTVDVMKGDL-ELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMA 274 (288)
T ss_dssp CCCEEEEETTE-EEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGS
T ss_pred EEEEEEEeCCE-EEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCC
Confidence 45688889995 99999976654421 678 4799999999999999999999999987
Q ss_pred cCCC
Q 012529 451 PFPR 454 (461)
Q Consensus 451 ~FPr 454 (461)
.-.-
T Consensus 275 ~~~~ 278 (288)
T 3dsq_A 275 RSLS 278 (288)
T ss_dssp SCSS
T ss_pred CCcc
Confidence 5443
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.45 E-value=2.5e-13 Score=135.59 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC--CC----C-------CcceeeeecCCCc------------c-cc--cCCc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC--EG----A-------GEQFCVTTLIPSS------------R-EA--AESP 203 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg----~-------~~~F~v~~~~~~~------------~-~~--~~s~ 203 (461)
+.+++.||++|...||.||.+|.+.+... +. . .+.|.+. ++.+ . .+ +++|
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~--nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLT--GEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEE--CSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEc--CccccccccccccccccceeeccchH
Confidence 47889999999999999999999976211 10 0 3344443 1100 0 01 1111
Q ss_pred cccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 204 VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 204 ~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
. +.++.+....--|+||||+|||+|+. +.+|+|||+|||+++++. |+.+++..++.+++.+
T Consensus 182 ~--llr~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 182 M--QVRYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp H--HHHHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 1 00111111112479999999999876 467999999999999886 6788888777766544
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.24 E-value=1.4e-11 Score=120.69 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC--C----CCC-------cceeeeecCCCcccccCCccccCCCcccc--CcC
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC--E----GAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDG--LID 216 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e----g~~-------~~F~v~~~~~~~~~~~~s~~~~l~~~~~~--~~~ 216 (461)
+++.+.+|++|...||.||++|.+.+... + ... ++|.+. . ...+.++....+..+.+. ...
T Consensus 56 ~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~---e-~~vLRtsl~p~ll~~l~~N~~~~ 131 (294)
T 2rhq_A 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT---D-EILMRTHTSPVQARTMEKRNGQG 131 (294)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS---S-SEEECSSSHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc---C-cceeeccCHHHHHHHHHhcCCCC
Confidence 57889999999999999999999876311 0 000 012211 0 011111111111111111 112
Q ss_pred cceeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 012529 217 WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 267 (461)
Q Consensus 217 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~i 267 (461)
--|+||||+|||+++. +.+|+|||+|||+++++ .|+.+++..++.+++.+
T Consensus 132 ~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp CEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4689999999998765 46799999999999998 57888888888877654
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.00 E-value=5.1e-10 Score=110.38 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCCC--CC-----------CcceeeeecCCCccccc--CCccccCCCccccCcC
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDCE--GA-----------GEQFCVTTLIPSSREAA--ESPVDAIPKTKDGLID 216 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~e--g~-----------~~~F~v~~~~~~~~~~~--~s~~~~l~~~~~~~~~ 216 (461)
+.+...||++|...||.|+.+|.+.+..-. .- .+.|.++ . ...+. ++|. +..+......
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~---e-~~vLRThtsp~--~lr~l~~~~~ 183 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD---T-TRLLRTQTSGV--QIRTMKAQQP 183 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS---S-SCEECSCTHHH--HHHHHTTCCS
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC---C-CceecccCCHH--HHHHHHhCCC
Confidence 467889999999999999999998653221 10 0122221 0 00011 1110 0000000101
Q ss_pred cceeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 012529 217 WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 267 (461)
Q Consensus 217 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~i 267 (461)
=-|+|++|+|||++ . +.+|+|+|+|+|..+.. .|+.++...++.+++.+
T Consensus 184 pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 184 PIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 13799999999998 4 68999999999977653 35677766666666554
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.82 E-value=5.3e-09 Score=108.37 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=33.9
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAY 263 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~l 263 (461)
|+|+||+|||+|.. +.+|+|||+|+|..++. .++.+++..++.+
T Consensus 349 riFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~ 394 (508)
T 3l4g_A 349 KYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLREF 394 (508)
T ss_dssp EEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred eEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 79999999999987 57999999999987653 2455555544443
No 25
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.02 E-value=1.7e-05 Score=82.48 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C------CCcceeeeecCCC--cccccCCcccc-----CC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G------AGEQFCVTTLIPS--SREAAESPVDA-----IP 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g------~~~~F~v~~~~~~--~~~~~~s~~~~-----l~ 208 (461)
-.-.+++..|.+.+|+.|.+.||.||.||++.+..- . + +.+.|.++..+.. ...+...|... +.
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~ 120 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 120 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHH
Confidence 346778899999999999999999999999998542 1 1 2356766544310 11122222111 00
Q ss_pred C-ccccCcCc-ceeEEEecccccCCCCCC--CCccccccceeeeccCCHHHHHHHHHHHH
Q 012529 209 K-TKDGLIDW-SQVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL 264 (461)
Q Consensus 209 ~-~~~~~~~~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li 264 (461)
. ...+...+ -|+|+||+|||+|..... |- -||+|.|+|..+++.++....+..++
T Consensus 121 ~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~-REF~q~d~~~~~~~~~~ad~E~~~~l 179 (477)
T 1hc7_A 121 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRT-SEFLWQEGHTAHATREEAEEEVRRML 179 (477)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBC-SEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HhhhhccccCCeeeEeecCEEeCCCCCCCccee-EEEEEccEEEEeCCHHHHHHHHHHHH
Confidence 0 00000011 379999999999954212 32 49999999999998777766666553
No 26
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.01 E-value=1.1e-05 Score=82.80 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--------CCCCcceeeeecCCCcccccCC---ccccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLIPSSREAAES---PVDAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~~~~~~~~~s---~~~~l~~~~-~ 212 (461)
..-.+++..+.+.+++.|.++||.||.||+|..... ....+.|.++ + ...++... +...+.... .
T Consensus 169 p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~-~~l~LrPt~e~~i~~~~~~~i~ 245 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--R-DNLYLIPTAEVPLTNLYREEIL 245 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--T-TCCEECSSTHHHHHGGGTTEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--C-CeEEEcCCCcHHHHHHHHhhcc
Confidence 456778999999999999999999999999998541 1223455442 1 11112111 111111100 0
Q ss_pred cCcC-cceeEEEecccccCCCCCC--C----CccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 213 GLID-WSQVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 213 ~~~~-~~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
.... --|+|++|+|||+|.+... + -.-||+|+|++. |++-++..+..++++..+.
T Consensus 246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~~ 307 (425)
T 2dq3_A 246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDAE 307 (425)
T ss_dssp ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHHH
Confidence 0001 2479999999999975211 1 124999999976 5655666656666665443
No 27
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.97 E-value=1.3e-05 Score=79.87 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-------C---CCCCcceeeeecCCCcccccCCccccCC--Cc-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD-------C---EGAGEQFCVTTLIPSSREAAESPVDAIP--KT-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-------~---eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~ 212 (461)
.-.+++..+...+|+.|...||.||.||++.... + ....+.|.+...+ ...+...|....+ +. ..
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~--g~~l~LRpd~T~~~aR~~~~ 111 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE--GQSITLRYDFTLPLVRLYSQ 111 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT--CCEEEECCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC--CCEEecCCCCcHHHHHHHHh
Confidence 4567888999999999999999999999998732 1 1233566553221 2222323321111 00 00
Q ss_pred cCc-CcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GLI-DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~~-~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
... .--|.|+||+|||+|.+... +.-||+|+++|.-..+
T Consensus 112 ~~~~~P~rl~y~g~vfR~e~p~~g-R~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 112 IKDSTSARYSYFGKIFRKEKRHKG-RSTENYQIGIELFGES 151 (344)
T ss_dssp CCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred cCCCCCeEEEEECcEEccCCCCCC-CcceeEEEEEEEEcCC
Confidence 000 12589999999999987533 5689999999986655
No 28
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.97 E-value=1.3e-05 Score=83.03 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----CCCcceeeeecCCCcccccCCc---cc--cCCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESP---VD--AIPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~~s~---~~--~l~~~ 210 (461)
.-.-.+++..|.+.+|+.|.+.||.||.||++.... ++ -+.+.|.+...+. ..+...| .. .+.+.
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~--~~~~LrPt~ee~t~~i~r~ 140 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHK--RELLYGPTNEEMITEIFRA 140 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTC--CEEEECSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCC--CeEEECCCChHHHHHHHHH
Confidence 445688899999999999999999999999999843 11 1335666543222 1112222 00 00000
Q ss_pred -cccCcCc-ceeEEEecccccC-CCCCC-CCccccccceeeeccCCHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAE-NSNTS-RHLAEFWMIEPELAFADLKDDMACATAY 263 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E-~~~t~-rHl~EFtmlE~e~a~~d~~dlm~~~e~l 263 (461)
......+ -|+|+||+|||+| ..+.. --.-||+|+|+|.-..+..++-..+..+
T Consensus 141 ~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp HCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 0000011 3799999999999 33211 0236999999998665665554444433
No 29
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.90 E-value=1e-05 Score=82.47 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----CCCcceeeeecCCCcccccCCcccc-----C-CCc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESPVDA-----I-PKT 210 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~~s~~~~-----l-~~~ 210 (461)
-.-.+++..|.+.+|+.|.+.||.||.||+|.... ++ -..+.|.++. +. ..+...|... + ...
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~-~~--~~~~LrP~~~~~~~~~~~~~ 103 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS-EN--REYCIKPMNCPGHVQIFNQG 103 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEE-TT--EEEEECSCSHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEec-CC--ceEEEcCCCCHHHHHHHHhh
Confidence 34678889999999999999999999999999854 11 0224565322 11 1111122110 0 000
Q ss_pred cccCcCc-ceeEEEecccccCCC--CCC--CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 211 KDGLIDW-SQVYTFGPTFRAENS--NTS--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 211 ~~~~~~~-~rVfeI~~~FR~E~~--~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
......+ -|+|+||+|||+|.+ ... | .-||+|.|+|. |.+.+++....++++...
T Consensus 104 ~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R-~reF~q~d~~~-f~~~~~~~~e~~e~i~~~ 163 (401)
T 1evl_A 104 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMR-VRGFTQDDAHI-FCTEEQIRDEVNGCIRLV 163 (401)
T ss_dssp CCBGGGCSEEEEEEEEEECCCCGGGCBTTTB-CSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred hhhhhhCChhhccccceecCCCCcccccccc-cCcEEecceEE-eCCHHHHHHHHHHHHHHH
Confidence 0000011 389999999999986 222 2 36999999994 777666655544555433
No 30
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.89 E-value=1.4e-05 Score=82.83 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHh-hhCCcEEEecceeecCCC----C----CCCcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 145 GAVARVRNALAYATHKFF-QENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~----e----g~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
-.-.+++..|.+.+|+.+ .+.||.||.||+|..... + -..+.|.++..+.....+...|... +...
T Consensus 61 P~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~ 140 (460)
T 3uh0_A 61 PNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGK 140 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHh
Confidence 456888999999999999 999999999999987431 1 1224565542210011111122110 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCC--CC--CCccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSN--TS--RHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 270 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~--t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~ 270 (461)
......+ -|+|++|+|||+|.+. .. | .-||+|.|++. |++-++..+.+++++..+..-
T Consensus 141 ~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R-~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~~ 204 (460)
T 3uh0_A 141 KDRSYNELPLRFSDFSPLHRNEASGALSGLTR-LRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDIV 204 (460)
T ss_dssp SCCBGGGCSEEEEECCEEECCCCTTTCBTTTB-CSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHH
T ss_pred ccccccccCeEEEEecCeeeCCCCCCCCCcee-eeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHHH
Confidence 0000011 3799999999999772 11 2 24999999996 777666666666666554443
No 31
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.84 E-value=3.4e-05 Score=79.32 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CC-CCCcceeeeecCCCcccccCCccccCC------Cccc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CE-GAGEQFCVTTLIPSSREAAESPVDAIP------KTKD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~e-g~~~~F~v~~~~~~~~~~~~s~~~~l~------~~~~ 212 (461)
.-.+++..|.+.+|+-|...||.||.||++.... ++ ...+.|.+...+. ..+...|....+ ...+
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g--~~l~LrPd~t~~~aR~~~~~~~ 95 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGG--REVTLIPEATPSTVRMVTSRKD 95 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTS--CEEEECSCSHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCC--CEEEeCCCChHHHHHHHHhcCC
Confidence 4577889999999999999999999999999842 11 1235676543221 222333321110 0111
Q ss_pred cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
. ..--|.|+||+|||+|.+...| .-||+|+++|.-..+
T Consensus 96 ~-~lP~rl~~~g~vfR~erp~~gR-~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 96 L-QRPLRWYSFPKVWRYEEPQAGR-YREHYQFNADIFGSD 133 (434)
T ss_dssp C-CSSEEEEECCEEECCCCSCSSC-CSEEEEEEEEEESCC
T ss_pred C-CCCeEEEEEcCeecCCCCCCCC-ccceEEeeEEEEcCC
Confidence 0 0124899999999999775444 579999999986555
No 32
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.84 E-value=3.8e-05 Score=81.82 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCCCcccccCCcccc-----CCC-
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDA-----IPK- 209 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~- 209 (461)
.-.-.+++..|.+.+|+.|.+.||.||.||+|....- .| ..+.|.++..+. ..+...|... +..
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~--~~~~LrP~~~~~~~~~~~~ 120 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRND--RDYILGPTHEETFTELIRD 120 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTC--CEEEECSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCC--CeEEEccccHHHHHHHHHh
Confidence 3456888999999999999999999999999998531 01 235666543221 1112222110 000
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAY 263 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~l 263 (461)
.......+ -|+|+||+|||+|.+ + +| .-||+|.|+|.-..+-.++...++.+
T Consensus 121 ~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 121 EINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLDQSYRDY 177 (572)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred hccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHHHHHHHH
Confidence 00000011 389999999999987 2 22 25999999998666666655555543
No 33
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.84 E-value=3.4e-05 Score=80.74 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CC--------CCcceeeeecCCC--cccccCCccc-----cCC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG--------AGEQFCVTTLIPS--SREAAESPVD-----AIP 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg--------~~~~F~v~~~~~~--~~~~~~s~~~-----~l~ 208 (461)
-.-.+++..|.+.+|+.|.+ ||.||.||+|.+... .+ +.+.|.++..+.. ...+...|.. .+.
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~ 146 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHH
Confidence 44677888999999999999 999999999998431 11 2467776543200 0111112211 010
Q ss_pred Cc-cccCcCc-ceeEEEecccccCCCCC-C--CCccccc-cceeeeccCCHHHHHHHHHHHHHH
Q 012529 209 KT-KDGLIDW-SQVYTFGPTFRAENSNT-S--RHLAEFW-MIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 209 ~~-~~~~~~~-~rVfeI~~~FR~E~~~t-~--rHl~EFt-mlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
.. ......+ -|+|++|+|||+|..++ . | .-||+ |.|++..+++.++....+++++..
T Consensus 147 ~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R-~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 147 ALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIR-VREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp HHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCEeeCCCCCCCCCce-eEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 00 0000012 37999999999997621 1 2 13999 999999889887777766555543
No 34
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=97.82 E-value=1.6e-05 Score=81.44 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-----CC-----CCcceeeeecCCCcccccCCccccCC--C----
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-----EG-----AGEQFCVTTLIPSSREAAESPVDAIP--K---- 209 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----eg-----~~~~F~v~~~~~~~~~~~~s~~~~l~--~---- 209 (461)
.-.+++..+.+.+|+.|.++||.||.||+|..... ++ ..+.|.+...+. ..+...|....+ .
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g--~~~~Lrp~~t~~~~r~~~~ 91 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGD--RSITLRPEGTAAVVRSYIE 91 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHH--CCEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCC--CEEEeCCCChHHHHHHHHh
Confidence 45778899999999999999999999999998431 11 124555422111 111112211100 0
Q ss_pred cccc--CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 210 TKDG--LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 210 ~~~~--~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.... ...--|+|++|+|||+|.+.. -+.-||+|+|+|.-..+
T Consensus 92 ~~~~~~~~lP~r~~~~g~vfR~E~~~~-gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 92 HKMQGNPNQPIKLYYNGPMFRYERKQK-GRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp TTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred ccccccCCCCeEEEEecCEeecCCCcC-CCcccEEEeeEEEECCC
Confidence 0000 001248999999999997643 34679999999986654
No 35
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.79 E-value=3.1e-05 Score=79.28 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---C-CC------CcceeeeecCCCcccccCCccccCC--Cc-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIP--KT-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~ 212 (461)
.-.+++..|.+.+|+-|...||.||.||++..... . |. .+.|.+...+ ...+...|....+ +. ..
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~--g~~l~Lrpd~t~~~ar~~~~ 92 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG--GRSLTLRPEGTAAMVRAYLE 92 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC--CCEEeeCCcchHHHHHHHHh
Confidence 35678889999999999999999999999987431 1 11 2556553222 2223333321111 00 00
Q ss_pred cC----cCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GL----IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~----~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.. ..--|.|+||++||+|.+... +.-||+|+++|.-..+
T Consensus 93 ~~~~~~~lP~rl~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 93 HGMKVWPQPVRLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 135 (421)
T ss_pred ccccccCCCeEEEEecCeecCCCCCCC-CcccEEEccEEEECCC
Confidence 00 012489999999999977544 4579999999986554
No 36
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.79 E-value=1.9e-05 Score=82.01 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeec------CCCCCCCc-ceeeeec---CC----------CcccccCCcc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGE-QFCVTTL---IP----------SSREAAESPV 204 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~------~~~eg~~~-~F~v~~~---~~----------~~~~~~~s~~ 204 (461)
-.-.+++..+...+|+.|..+||.||.||++.. + ++...+ .|.+... +. ....+...|.
T Consensus 23 P~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd 101 (465)
T 3net_A 23 PSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFD 101 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEEEEC----------------CCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEecccccccccccccccCCCCCEEEeCCC
Confidence 345677899999999999999999999999943 3 333345 7776443 10 0112222222
Q ss_pred ccCCC--cc-c--cC-cCcceeEEEecccccCCCCCCCCccccccceeeeccC
Q 012529 205 DAIPK--TK-D--GL-IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 205 ~~l~~--~~-~--~~-~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 251 (461)
...+. .. . .. ..--|.|++|||||.|.+... +.-||+|+++|.-..
T Consensus 102 ~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~g-r~Ref~Q~g~ei~G~ 153 (465)
T 3net_A 102 QTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGR 153 (465)
T ss_dssp SHHHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECS
T ss_pred ChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCC-CcceeEEeeEEEECC
Confidence 21110 00 0 00 012389999999999987544 457999999998655
No 37
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.77 E-value=2.6e-05 Score=84.30 Aligned_cols=121 Identities=11% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----CCCcceeeeecCCCcccccCCccccC-----C-C
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESPVDAI-----P-K 209 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~~s~~~~l-----~-~ 209 (461)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.... ++ -..+.|.+...+. ...+...|.... . .
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~-~~~~~LrP~~~~~~~~~~~~ 345 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDE-TESMVLRPMNCPHHMMIYAN 345 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETT-TEEEEECSSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCC-CeEEEeCCCCCHHHHHHHHh
Confidence 455688999999999999999999999999999853 11 1234555422221 011222221110 0 0
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.......+ -|+|+||+|||+|.+. .+| .-||||.|+|. |++.+++.+...+++..+
T Consensus 346 ~~~syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~~~ 406 (645)
T 1nyr_A 346 KPHSYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMI 406 (645)
T ss_dssp SCCBGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred hhhhccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHHHH
Confidence 00000011 3799999999999883 333 26999999998 777666655555555433
No 38
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.72 E-value=3.5e-05 Score=79.56 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-------CcceeeeecCCCcccccCC---ccccCCCc-cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAES---PVDAIPKT-KD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~~s---~~~~l~~~-~~ 212 (461)
..-.+++.++++.+++.+.++||.||.||.|..... ++. .+.|.++..+ ...+|... +...+... ..
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~-~~~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDG-DKKYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSS-SCEEECSSTHHHHHHHTTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCC-cceEEeccCcHHHHHHHhcccc
Confidence 457889999999999999999999999999998543 222 2566654211 12222211 00011110 00
Q ss_pred cCcCc-ceeEEEecccccCC-CCC-------CCCccccccceeeeccCCHHH--HHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAEN-SNT-------SRHLAEFWMIEPELAFADLKD--DMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~-~~t-------~rHl~EFtmlE~e~a~~d~~d--lm~~~e~li~~i 267 (461)
....+ -|+|++++|||+|- +.+ +-| ||+|.|.+. |+.-++ ..+..++++...
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~Rvr--qF~kvE~~~-f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVH--QFDKIEQFV-VCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCS--EEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceee--eEEEEEEEE-EeCcchHHHHHHHHHHHHHH
Confidence 00011 26999999999996 321 224 999999985 665444 666666666543
No 39
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.71 E-value=3.4e-05 Score=79.02 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---C-CC------CcceeeeecCCCcccccCCccccCC--Cc-c-
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIP--KT-K- 211 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~- 211 (461)
.-.+++..|.+.+|+-|...||.||.||++..... . |. .+.|.+...+. ..+...|....+ +. .
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g--~~l~Lrpd~t~~~aR~~~~ 93 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNG--DSLTLRPEGTAGCVRAGIE 93 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTS--CEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCC--CEEEeCCCchHHHHHHHHh
Confidence 35778899999999999999999999999997431 1 11 25676543222 223333321111 00 0
Q ss_pred cc--CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 212 DG--LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 212 ~~--~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.. ...--|.|+||+|||+|.+... +.-||+|+++|.-..+
T Consensus 94 ~~~~~~~P~rl~~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 94 HGLLYNQEQRLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp HTCSTTCCEEEEEEEEEECCCCCCSS-CCSEEEEEEEEEESCC
T ss_pred cccccCCCeEEEEEcCEecCCCCCCC-ccceeEEeeEEEECCC
Confidence 00 0012489999999999977544 4579999999986655
No 40
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.70 E-value=6.3e-05 Score=77.90 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-----CC---C-CCcceeeeecCCC--cccccCCcccc-----CC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-----CE---G-AGEQFCVTTLIPS--SREAAESPVDA-----IP 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-----~e---g-~~~~F~v~~~~~~--~~~~~~s~~~~-----l~ 208 (461)
-.-.+++..|.+.+|+.|.+.||.||.||++.+.. ++ + +.+.|.++..+.. ...+...|... +.
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~ 114 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMM 114 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHH
Confidence 44677889999999999999999999999998743 11 1 2356776543210 11122222111 00
Q ss_pred C-ccccCcCc-ceeEEEecccccCCC-CCC--CCccccc-cceeeeccCCHHHHHHHHHHHHH
Q 012529 209 K-TKDGLIDW-SQVYTFGPTFRAENS-NTS--RHLAEFW-MIEPELAFADLKDDMACATAYLQ 265 (461)
Q Consensus 209 ~-~~~~~~~~-~rVfeI~~~FR~E~~-~t~--rHl~EFt-mlE~e~a~~d~~dlm~~~e~li~ 265 (461)
. ...+...+ -|+|+||+|||+|.+ ... |- -||+ |.|.+..+++.++.....++++.
T Consensus 115 ~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~-REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 115 KLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRL-REIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp HTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBC-SBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhhcccCCeEEEEEccEecCccCCCCCceEe-eeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 0 00010011 279999999999976 222 22 4999 99999988887777665544444
No 41
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.69 E-value=5.3e-05 Score=76.31 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-----CC-CC-CcceeeeecCCCcccccCCccccCC--Ccc-c---c
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-----CE-GA-GEQFCVTTLIPSSREAAESPVDAIP--KTK-D---G 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-----~e-g~-~~~F~v~~~~~~~~~~~~s~~~~l~--~~~-~---~ 213 (461)
-.+++..+...+|+.|..+||.||.||++.... ++ .. .+.|.+...+ ...+...|....+ +.. . .
T Consensus 36 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~--g~~l~LRpd~T~~~aR~~~~~~~~ 113 (373)
T 3rac_A 36 FAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGG--GDAVALRPEMTPSIARMAAPRVAA 113 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCS--SSCEEECSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCC--CCEEEECCcCHHHHHHHHHhcccc
Confidence 467788999999999999999999999998632 11 12 3555442211 1222222221111 000 0 0
Q ss_pred CcCcceeEEEecccccCCC------CCCCCccccccceeeeccCC
Q 012529 214 LIDWSQVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~------~t~rHl~EFtmlE~e~a~~d 252 (461)
...--|.|++|+|||+|.+ ... +.-||+|+++|.-..+
T Consensus 114 ~~~P~r~~y~g~vfR~e~~g~~~~~~~g-R~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 114 GRTPIRWCYCERVYRRTDDPASLSWASG-KAAESTQVGIERIGEE 157 (373)
T ss_dssp TCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred CCCCeEEEEEcceEccCCCcccccccCC-ccceeEEeeeEEECCC
Confidence 0113589999999999976 333 4579999999985443
No 42
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.69 E-value=0.00012 Score=74.55 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=27.5
Q ss_pred cceeEEEecccccCCCCCCCCccccccceeeecc
Q 012529 217 WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250 (461)
Q Consensus 217 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~ 250 (461)
..|+|++|.|||.+.. +..|.|+|.|+|--..|
T Consensus 132 ~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 132 LDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp CSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred CCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 4599999999999977 58999999999954433
No 43
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.68 E-value=0.00012 Score=76.60 Aligned_cols=122 Identities=17% Similarity=0.088 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C---C-----CCcceeeeecCCCc--ccccCCcccc-----CC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E---G-----AGEQFCVTTLIPSS--REAAESPVDA-----IP 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e---g-----~~~~F~v~~~~~~~--~~~~~s~~~~-----l~ 208 (461)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... + | .-+.|.++..+... ..+...|... ++
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~ 137 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAY 137 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHH
Confidence 346788899999999999999999999999976431 1 2 12456554332110 0111122110 00
Q ss_pred Cc-cccCcCc-ceeEEEecccccCCCCC-C--CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 209 KT-KDGLIDW-SQVYTFGPTFRAENSNT-S--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 209 ~~-~~~~~~~-~rVfeI~~~FR~E~~~t-~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.. ......+ -|+|++|+|||+|-+.+ . | .-||+|.|.+..|++.++..+.+++++...
T Consensus 138 ~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R-~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~ 200 (519)
T 4hvc_A 138 AKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR-TREFLWQEGHSAFATMEEAAEEVLQILDLY 200 (519)
T ss_dssp HHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCeEEEEEcCeeeCCCCCCCCCcc-eeEEEEeeEEEEecCHHHHHHHHHHHHHHH
Confidence 00 0000011 37999999999994421 1 2 139999999999999888888877766543
No 44
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.67 E-value=9.1e-05 Score=75.28 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC------CCCCcceeeeecCCCcccccCCccccCC--Ccc-c---
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIP--KTK-D--- 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~-~--- 212 (461)
-.-.+++..+...+|+.|..+||.||.||++..... ....+.|.+...+ ...+...|....+ +.. .
T Consensus 21 P~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~--g~~l~LRpd~T~~~aR~~~~~~~ 98 (400)
T 3od1_A 21 PEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQ--GNTLVLRPDMTAPIARLVASSLK 98 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTT--SCEEEECSCSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCC--CCEEEECCCCHHHHHHHHHhhcc
Confidence 345678889999999999999999999999976432 1223566553222 1222323322111 000 0
Q ss_pred cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
....--|.|++|+|||+|.+... +.-||+|+++|.-..+
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~g-R~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEGG-KPAEFEQLGVELIGDG 137 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC---C-CCSEEEEEEEEEESCC
T ss_pred cCCCCeEEEEEcCEEeCCCCCCC-CCCccEEeEEEEECCC
Confidence 00012489999999999987544 4579999999986554
No 45
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.63 E-value=0.0002 Score=74.46 Aligned_cols=123 Identities=14% Similarity=0.069 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC----C----CCC-cceeeeecCCCcccccCC---ccccCCCc-
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAG-EQFCVTTLIPSSREAAES---PVDAIPKT- 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----e----g~~-~~F~v~~~~~~~~~~~~s---~~~~l~~~- 210 (461)
...-.++..++++.+++.+.++||.||.||.|..... + -.. +.|.++.-+....+|... +...+...
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~ 294 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDH 294 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTE
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhc
Confidence 3456888899999999999999999999999998432 1 122 566653211111222111 00000000
Q ss_pred cccCcCc-ceeEEEecccccCCC-----C--CCCCccccccceeeeccCCH-HHHHHHHHHHHHHHH
Q 012529 211 KDGLIDW-SQVYTFGPTFRAENS-----N--TSRHLAEFWMIEPELAFADL-KDDMACATAYLQYVV 268 (461)
Q Consensus 211 ~~~~~~~-~rVfeI~~~FR~E~~-----~--t~rHl~EFtmlE~e~a~~d~-~dlm~~~e~li~~i~ 268 (461)
......+ -|+|++++|||+|-. + -+.| ||+|.|.+.--.+. ++..+..++++....
T Consensus 295 i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~Rvh--qF~kvE~~~f~~pe~e~s~~~~e~~l~~~~ 359 (501)
T 1wle_A 295 SVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVH--HFTKVEMFGVTGPGLEQSSELLEEFLSLQM 359 (501)
T ss_dssp EEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCS--EEEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCeeEEeccCcccCCCCCCCCCcCceeee--eeeeeeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 0000011 269999999999955 1 1234 99999998743343 688887777775543
No 46
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.63 E-value=0.0002 Score=73.13 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCCCcccccCC---ccccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAES---PVDAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~~s---~~~~l~~~~-~ 212 (461)
-.-.+++..|.+.+++.+.++||.||.||+|..... . | ..+.|.++ + ...++... +...+..-. .
T Consensus 163 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d-~~l~L~Pt~e~~~~~~~~~~~~ 239 (421)
T 1ses_A 163 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--E-TDLYLTGTAEVVLNALHSGEIL 239 (421)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--T-SSEEECSSTHHHHHHTTTTCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--C-CeEEEeecCcHHHHHHhccccc
Confidence 346788899999999999999999999999987432 1 1 12344432 1 11111110 000111000 0
Q ss_pred cCcCc-ceeEEEecccccCCC------CC--CCCccccccceeeeccCC-HHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENS------NT--SRHLAEFWMIEPELAFAD-LKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~------~t--~rHl~EFtmlE~e~a~~d-~~dlm~~~e~li~~i 267 (461)
....+ -|+|++|+|||+|-+ ++ +. -||+|+|++..-.. .++..+..++++...
T Consensus 240 s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~--rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 240 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRV--HQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSC--SEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred CchhCCEEEEecCCeecCCccccCcCCCCCeee--eeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 00011 279999999999952 12 22 49999998874333 377766666666544
No 47
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.62 E-value=6.8e-05 Score=78.39 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC------CCcceeeeecCCC--cccccCCccc-----cC
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPS--SREAAESPVD-----AI 207 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~~~--~~~~~~s~~~-----~l 207 (461)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+... +. +.+.|.++..+.. ...+...|.. .+
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 3556788999999999999999999999999987541 11 2356776543210 0111112211 00
Q ss_pred CCc-cccCcCc-ceeEEEecccccCC-CCCC-CCccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 208 PKT-KDGLIDW-SQVYTFGPTFRAEN-SNTS-RHLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 208 ~~~-~~~~~~~-~rVfeI~~~FR~E~-~~t~-rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
... ..+...+ -|+|++++|||+|- .... --.-||+|.|.+...++.+++.+.+++++....
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~ 195 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVID 195 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 000 0000011 37999999999993 3111 012499999999976898888888887775433
No 48
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.57 E-value=8.4e-05 Score=76.72 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCCCccccc-CC--ccccCCCc-cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAA-ES--PVDAIPKT-KD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~-~s--~~~~l~~~-~~ 212 (461)
..-.+++.++++.+++.+.++||.||.||.|..... + | ..+.|.++..+. ..++. ++ |...+... ..
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~-~~~LipTaE~pl~~l~~~ei~ 260 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGED-EKYLIATSEQPISAYHAGEWF 260 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTE-EEEECSSTHHHHHHHTTTCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCC-eEEEeccccHHHHHHHhcccc
Confidence 357788999999999999999999999999998542 1 1 235677643111 11221 11 11111110 00
Q ss_pred c--CcCc-ceeEEEecccccCCCC------CCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 213 G--LIDW-SQVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~--~~~~-~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
. ...+ -|+|++++|||+|-.- +---.-||+|.|.+. |+.-++..+..++++...
T Consensus 261 ~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 261 ESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp SSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 0 0011 2699999999999641 101123999999986 677777777777776544
No 49
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.56 E-value=6.7e-05 Score=77.90 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCC----CCcceeeeecCCCcccccCCccccCC--Cc-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIP--KT-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~ 212 (461)
.-.+++..|...+|+.|..+||.||.||++.... ++. ..+.|.+...+. ...+...|....+ +. ..
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~-g~~l~LRPd~t~~~ar~~~~ 122 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALN-GENLTLRPENTAAVVRAAIE 122 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTT-CCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCC-CCEEEeCcccHHHHHHHHHH
Confidence 4577889999999999999999999999998743 220 125666532220 1222222221111 00 00
Q ss_pred ---cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 ---GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ---~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
....--|.|++|+|||+|.+... +.-||+|+++|.-..+
T Consensus 123 ~~~~~~lP~r~~~~g~vfR~E~~~~g-R~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 123 HNMLYDGPKRLWYIGPMFRHERPQRG-RYRQFHQVGVEALGFA 164 (467)
T ss_dssp TTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred cccccCCCEEEEEEccEEccCCCCCC-CcCceEEEEEEEEeCC
Confidence 00012489999999999987544 4579999999985443
No 50
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.55 E-value=0.00016 Score=74.85 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecC------CCCCCCcceeeeecCCCcccccCCccccCC--Cc-cccCc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITAS------DCEGAGEQFCVTTLIPSSREAAESPVDAIP--KT-KDGLI 215 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~------~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~~~~ 215 (461)
-.-.+++..|...+|+.|..+||.||.||++... .++...+.|.+.. .....+...|....+ +. .+...
T Consensus 25 P~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D--~~g~~l~LRPd~T~~~aR~~~~~~~ 102 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD--QGGELLSLRYDLTVPFARYLAMNKL 102 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCC--CSSCCEEECSCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEEC--CCCCEEEeCCcCcHHHHHHHHhcCC
Confidence 4467888999999999999999999999999653 2222234454322 222223333322111 00 00000
Q ss_pred CcceeEEEecccccCCCCCC-CCccccccceeeecc
Q 012529 216 DWSQVYTFGPTFRAENSNTS-RHLAEFWMIEPELAF 250 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~-rHl~EFtmlE~e~a~ 250 (461)
.--|.|+||++||.|..... -+.-||+|+++|.-.
T Consensus 103 ~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G 138 (464)
T 4g84_A 103 TNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 138 (464)
T ss_dssp SCEEEEEEEEEECCCC------CCSEEEEEEEEEES
T ss_pred CCceeEEEecceeccCCccccCccceeeecceeccC
Confidence 12378999999999965322 244699999999854
No 51
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.53 E-value=6.3e-05 Score=77.60 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--CCC-----cceeeeecCCCcccccCC---ccccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAG-----EQFCVTTLIPSSREAAES---PVDAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~~-----~~F~v~~~~~~~~~~~~s---~~~~l~~~~-~ 212 (461)
..-.+++..|.+.+++.+.++||.||.||+|..... + |-- +.|.++ ....+|... +...+.... .
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~---d~~l~LrPt~e~~~~~~~~~~~~ 266 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE---DEDLYLIPTAEHPLAGMHANEIL 266 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT---TSSCEECSSTHHHHHHTTTTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec---CCcEEEcCcCcHHHHHHHHhCcc
Confidence 456788899999999999999999999999998432 1 211 334332 111122111 001111100 0
Q ss_pred cCcCc-ceeEEEecccccCCCCCC--C----CccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
....+ -|+|++|+|||+|.+... + -.-||+|.|++ .|++-++..+..++++....
T Consensus 267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~~ 328 (455)
T 2dq0_A 267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNAE 328 (455)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHHH
T ss_pred CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHHH
Confidence 00011 379999999999975211 0 12399999998 57766777777777765443
No 52
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.52 E-value=0.00012 Score=79.02 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCCCcccccCCcccc-----CC-C
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDA-----IP-K 209 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~-~ 209 (461)
.-.-.+++..|.+.+|+.+.+.||.||.||+|....- + | ..+.|. ...+. ..+...|... +. .
T Consensus 267 lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~~--~~~~LrP~~~~~~~~~~~~ 343 (642)
T 1qf6_A 267 HNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSEN--REYCIKPMNCPGHVQIFNQ 343 (642)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEETT--EEEEECSSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eecCC--ceEEecCCCCHHHHHHHHh
Confidence 4567889999999999999999999999999998541 1 1 124555 22111 1111122110 00 0
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.......+ -|+|+||+|||+|.+ +.+| .-||||.|+|. |++.+++....++++..+
T Consensus 344 ~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~~ 404 (642)
T 1qf6_A 344 GLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLV 404 (642)
T ss_dssp SCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred hhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHHH
Confidence 00000011 389999999999987 2221 35999999998 777666555554444433
No 53
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.50 E-value=0.00015 Score=75.23 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCCCcccccCCcccc-----CCCc--c
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDA-----IPKT--K 211 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~--~ 211 (461)
-.+++..|.+.+|+.|.+.||.||.||+|..... .| ..+.|.++.-+ ..+...|... +... .
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~---~~l~LRP~~t~~i~~~~~~~~~ 124 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEG---HEFAVKPMNCPYHILLFLNEVA 124 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETT---EEEEECSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCC---cEEEEccccHHHHHHHHHhhhh
Confidence 5778899999999999999999999999998531 11 23566653211 1222222111 0000 0
Q ss_pred ccC--cCc-ceeEEEecccccCCCC--CC--CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 212 DGL--IDW-SQVYTFGPTFRAENSN--TS--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 212 ~~~--~~~-~rVfeI~~~FR~E~~~--t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
+.. ..+ -|+|+||+|||+|.+. .. | .-||+|.|+|.- .+.++..+...+++..+
T Consensus 125 s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R-~REF~Q~~~e~f-~~~~~~~de~~e~i~~~ 185 (471)
T 3a32_A 125 KHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR-VRGFTQDDAHII-VPGGRVIDVVYDVFEEM 185 (471)
T ss_dssp HHGGGSCSSEEEEEEEEEECCCCGGGCBTTTB-CSEEEEEEEEEE-EEGGGHHHHHHHHHHHH
T ss_pred hccccccCCeEEeeccceeccCCCccccccee-EEEEEECCeEEE-cChHHHHHHHHHHHHHH
Confidence 000 011 3899999999999763 11 2 359999999974 44444444444444433
No 54
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.49 E-value=8.8e-05 Score=76.70 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--CC-C----CcceeeeecCCCcccccCCccccCC--Cc-cccC-
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG-A----GEQFCVTTLIPSSREAAESPVDAIP--KT-KDGL- 214 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg-~----~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~~~- 214 (461)
.-.+++..+...+|+.|..+||.||.||++..... .+ + .+.|.+...+ ...+...|....+ +. ....
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~--g~~l~LRpd~T~~~aR~~~~~~~ 118 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKG--GHRVALRPEMTPSLARLLLGKGR 118 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSS--SCEEEECSCSHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCC--CCEEecCCcCHHHHHHHHHhcCc
Confidence 34678899999999999999999999999987542 11 1 2456543222 2223333322111 00 0000
Q ss_pred --cCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 215 --IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 215 --~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
..--|.|+||+|||+|.+... +.-||+|+++|.-..+
T Consensus 119 ~~~~P~r~~y~g~vfR~e~~~~g-R~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 119 SLLLPAKWYSIPQCWRYEAITRG-RRREHYQWNMDIVGVK 157 (456)
T ss_dssp TCCSSEEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred ccCCCEEEEEeccEEecCCCCCC-CccceEEEEEEEEcCC
Confidence 012489999999999987544 4579999999986553
No 55
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.41 E-value=0.00052 Score=71.39 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--------CCCCcceeeeecC--------CCcccccCC---ccc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLI--------PSSREAAES---PVD 205 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~--------~~~~~~~~s---~~~ 205 (461)
..-.+++.++++.+++.+.++||.||.||.|.+... .-..+.|.++..+ ....+|... +..
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~ 277 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIA 277 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHH
Confidence 346888999999999999999999999999987432 1123567664221 111222211 111
Q ss_pred cCCCcc-ccCcCc-ceeEEEecccccCCCCCC------CCccccccceeeeccCCHHH--HHHHHHHHHHHH
Q 012529 206 AIPKTK-DGLIDW-SQVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKD--DMACATAYLQYV 267 (461)
Q Consensus 206 ~l~~~~-~~~~~~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~d~~d--lm~~~e~li~~i 267 (461)
.++... .....+ -|+|++++|||+|-+-.. --.-||+|.|.+. |+.-++ ..+..++++...
T Consensus 278 ~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 278 ALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp TTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred HHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHHHH
Confidence 111100 000011 269999999999964100 1124999999985 554333 666666665543
No 56
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.41 E-value=0.00037 Score=72.81 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHH-HhhhCCcEEEecceeecCCC----C----CCCcceeeeecC----------------------
Q 012529 145 GAVARVRNALAYATHK-FFQENGFIWISSPIITASDC----E----GAGEQFCVTTLI---------------------- 193 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~-ff~~~gF~EV~TPiL~~~~~----e----g~~~~F~v~~~~---------------------- 193 (461)
..-.+++..|.+.+++ ++.+.||.||.||+|.+... + -+.+.|.++..+
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~ 307 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPT 307 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccc
Confidence 4567788899999996 68899999999999998421 1 122455553211
Q ss_pred --------CCcccccCC---ccccCCCcc-ccCcCc-ceeEE-EecccccCCC--CCCCCccccccceeeeccCCHHHHH
Q 012529 194 --------PSSREAAES---PVDAIPKTK-DGLIDW-SQVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDM 257 (461)
Q Consensus 194 --------~~~~~~~~s---~~~~l~~~~-~~~~~~-~rVfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm 257 (461)
.....+... +...+.... .....+ -++|+ +|+|||+|.. ++---.-||+|.|++. |++.++..
T Consensus 308 ~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~ 386 (522)
T 2cja_A 308 KLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVL 386 (522)
T ss_dssp HHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHH
T ss_pred cccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHH
Confidence 001111110 111111100 000011 26999 9999999932 1111234999999998 88888888
Q ss_pred HHHHHHHHHHHHHH
Q 012529 258 ACATAYLQYVVRYI 271 (461)
Q Consensus 258 ~~~e~li~~i~~~~ 271 (461)
+..++++......+
T Consensus 387 ee~ee~i~~~~~~~ 400 (522)
T 2cja_A 387 KCAEELHDRYMHIF 400 (522)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888874444433
No 57
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.40 E-value=0.00021 Score=75.10 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecC------CCCCCCcceeeeecCCCcccccCCccccCC--Cc-cccC
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITAS------DCEGAGEQFCVTTLIPSSREAAESPVDAIP--KT-KDGL 214 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~------~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~~~ 214 (461)
.-.-.++|..|...+|+.|..+||.||.||++... .++..-..|.+.. .....++..|....+ +. .+..
T Consensus 77 lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D--~~g~~l~LRPd~T~~~aR~~~~~~ 154 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD--QGGELLSLRYDLTVPFARYLAMNK 154 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCC--TTSCCEEECSCSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEEC--CCCCEEEeCCcCcHHHHHHHHhCC
Confidence 34567888999999999999999999999999753 2222223443322 222223333321111 00 0000
Q ss_pred cCcceeEEEecccccCCCCC-CCCccccccceeeecc
Q 012529 215 IDWSQVYTFGPTFRAENSNT-SRHLAEFWMIEPELAF 250 (461)
Q Consensus 215 ~~~~rVfeI~~~FR~E~~~t-~rHl~EFtmlE~e~a~ 250 (461)
..--|.|+||+|||.|.+.. .=+.=||+|+++|.-.
T Consensus 155 ~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G 191 (517)
T 4g85_A 155 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 191 (517)
T ss_dssp CSCEEEEEEEEEECCCC-------CCEEEEEEEEEES
T ss_pred CCCceeEEEeceEeccCcccccCccceeeeeceeccC
Confidence 11237899999999997521 1134699999999865
No 58
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.39 E-value=0.00042 Score=72.80 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C-------CCCcceeeeecCCCcccccCCc---cccCCCc-cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E-------GAGEQFCVTTLIPSSREAAESP---VDAIPKT-KD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e-------g~~~~F~v~~~~~~~~~~~~s~---~~~l~~~-~~ 212 (461)
..-.+++.++++.+++.+.++||.||.||.|.+... + -..+.|.++. ...+|.... ...+... ..
T Consensus 272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~~~l~~~~i~ 348 (536)
T 3err_A 272 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE---TDLYLTGTAEVVLNALHSGEIL 348 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT---TTEEECSSTHHHHHHHTTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC---CCEEEccCCcHHHHHHHhcccc
Confidence 457889999999999999999999999999987432 1 1235666531 112222110 0011110 00
Q ss_pred cCcCc-ceeEEEecccccCCC-CC-----CCCccccccceeeeccCCH--HHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENS-NT-----SRHLAEFWMIEPELAFADL--KDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~-~t-----~rHl~EFtmlE~e~a~~d~--~dlm~~~e~li~~i 267 (461)
....+ -|+|++++|||+|-+ .+ ---.-||+|.|.+. |+.- ++..+..++++...
T Consensus 349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENA 411 (536)
T ss_dssp EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHH
T ss_pred cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHH
Confidence 00011 269999999999963 11 11234999999985 6643 47777777776654
No 59
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.17 E-value=0.0014 Score=68.47 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhh--hCCcEEEecceeecCC
Q 012529 146 AVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~~ 179 (461)
.-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 357788999999999999 8999999999999854
No 60
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.04 E-value=0.00043 Score=66.67 Aligned_cols=86 Identities=9% Similarity=-0.015 Sum_probs=52.4
Q ss_pred HHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccc--cC-c-CcceeEEEecccccCCCC
Q 012529 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKD--GL-I-DWSQVYTFGPTFRAENSN 233 (461)
Q Consensus 158 iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~--~~-~-~~~rVfeI~~~FR~E~~~ 233 (461)
+++.|..+||.||.||++.....=.. +.|. + .....+...|....+.... .. . .--|.|++|+|||.|.+.
T Consensus 12 ~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f~-d---~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~ 86 (275)
T 1usy_A 12 FYSKATKKGFSPFFVPALEKAEEPAG-NFFL-D---RKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGSD 86 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCCS-SCEE-E---TTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETTE
T ss_pred HHHHHHHCCCEEecCccccchhhhcc-cccC-C---CCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecCCCC
Confidence 34999999999999999997543111 2331 2 1122233333221111100 00 0 124899999999999874
Q ss_pred CCCCccccccceeeeccCC
Q 012529 234 TSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 234 t~rHl~EFtmlE~e~a~~d 252 (461)
. -||||+++|.-..+
T Consensus 87 ~----Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 87 L----VAEYQLGLEKVPRN 101 (275)
T ss_dssp E----EEEEEEEEEEESCC
T ss_pred C----CeeeEeCEEEecCC
Confidence 3 59999999986553
No 61
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.90 E-value=0.0014 Score=64.36 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-------CcceeeeecCCC---------------------
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPS--------------------- 195 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~--------------------- 195 (461)
...-+++..+.+.+++ ..++||.||.||.|.+... ++. ...|.+..+...
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l 139 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSL 139 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGE
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcccccccccc
Confidence 4456777889999999 8899999999999987443 222 244555432210
Q ss_pred ---cccccCCccccCCCccc--cC--cCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 196 ---SREAAESPVDAIPKTKD--GL--IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 196 ---~~~~~~s~~~~l~~~~~--~~--~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
+.++....+..+...-. +. ..=-|+-++++|||.|.+.+--.+-+|+|.|+-. |++-+++.+..++++..+-
T Consensus 140 ~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae 218 (346)
T 3mf2_A 140 SPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQ 218 (346)
T ss_dssp EEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHH
Confidence 11111111111100001 00 0113577799999999876656667999998865 6789999999888887654
Q ss_pred H
Q 012529 269 R 269 (461)
Q Consensus 269 ~ 269 (461)
.
T Consensus 219 ~ 219 (346)
T 3mf2_A 219 A 219 (346)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.78 E-value=0.013 Score=49.80 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=56.5
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch-hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~-~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
..|++.|+|.++.....-.-+.|.|+|| ..|.|....+...- ..... +..|++|.|.|.+..-.. ...|.+..
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g~yVrV~G~l~~f~g---~~qi~~~~ 105 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 105 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCCCEEEEEEEEEeECC---EEEEEEEE
Confidence 4689999999999987777789999998 14999887654211 11334 999999999999977543 36678877
Q ss_pred EEEecc
Q 012529 109 IVLVGK 114 (461)
Q Consensus 109 i~vl~~ 114 (461)
+..+..
T Consensus 106 ir~v~d 111 (132)
T 3kdf_D 106 IMPLED 111 (132)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 766644
No 63
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.77 E-value=0.014 Score=51.22 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=61.7
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhh-hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
+.|+|.|.|.+++...+.....|-|+||. .|.|++..+... -.. ... +..|++|.|.|.+..-.. ..+|.++
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr~---~rqI~~~ 121 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFRS---EVELIAQ 121 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSSS---SCEEEEE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCC-eEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeCC---EEEEEEE
Confidence 56999999999999877788899999983 699998765421 111 123 899999999999966433 4689999
Q ss_pred EEEEecc
Q 012529 108 KIVLVGK 114 (461)
Q Consensus 108 ~i~vl~~ 114 (461)
++.++..
T Consensus 122 ~i~~v~d 128 (159)
T 3kf6_A 122 SFEELRD 128 (159)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 9998875
No 64
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.74 E-value=0.013 Score=50.04 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=56.7
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch--hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
..|++.|+|.+++....-.-+.|.|+||. |.|....+.... ..... +..|++|.|.|.+..-.. ...|.+.
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~--~~~g~yVrV~G~v~~f~g---~~qi~~~ 109 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASE--IRNNVYVRVLGTLKSFQN---RRSISSG 109 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSCE--EEEEEECC--------CCS--CCTTCEEEEEEEEEEETT---EEEEEES
T ss_pred EEEEEEEEEEEEEecCCeEEEEEECCCCC--EEEEEecccCCcccccccc--cCCCCEEEEEEEEEEeCC---EEEEEEE
Confidence 56999999999999877677889999974 999887643321 12334 999999999999976532 3667777
Q ss_pred EEEEecc
Q 012529 108 KIVLVGK 114 (461)
Q Consensus 108 ~i~vl~~ 114 (461)
.+..+..
T Consensus 110 ~ir~v~d 116 (136)
T 4gop_B 110 HMRPVID 116 (136)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 7766544
No 65
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.44 E-value=0.0063 Score=62.39 Aligned_cols=117 Identities=9% Similarity=-0.040 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhh-hCC-cEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCcc-ccCcCc-ceeEE
Q 012529 147 VARVRNALAYATHKFFQ-ENG-FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK-DGLIDW-SQVYT 222 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~-~~g-F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~-~~~~~~-~rVfe 222 (461)
=..+|+.|++..|.-|. +++ +.||+||+...-..-|.-+-|. -+.-+. +++..+...+... +....+ =++.|
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~-~~LRPe---Taqg~~~nfk~~~~s~r~~LP~~iaq 178 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR-GGLREN---LLHGALEHYVNCLDLVNKRLPYGLAQ 178 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT-TB-CSC---SHHHHHHHTTTTTGGGTTBSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc-ceECCC---CChhHHHHHhhhhhhccccCCeEEEE
Confidence 45788999986665554 355 7779999955533334444443 011110 0000110001100 000011 25899
Q ss_pred EecccccCC--CCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 223 FGPTFRAEN--SNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 223 I~~~FR~E~--~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
||+|||+|. + +.+| .-||||.|++. |++-++..+..+.++.....
T Consensus 179 ig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~~~ 229 (459)
T 3ikl_A 179 IGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHRLQ 229 (459)
T ss_dssp EEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred Eeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHHHH
Confidence 999999994 2 3333 25999999985 77777766666666655543
No 66
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.42 E-value=0.035 Score=45.14 Aligned_cols=88 Identities=13% Similarity=0.207 Sum_probs=65.4
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeec-------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCC
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~-------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l 80 (461)
...|++|.+ +..|.|.|+|.++.. . +++.=+.|.|.|| +|.+++-.+.... . +
T Consensus 5 ~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~~----~--l 67 (105)
T 3dm3_A 5 TYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTDI----D--V 67 (105)
T ss_dssp EECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGGS----C--C
T ss_pred ceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECccccc----c--c
Confidence 345666654 367999999988642 1 3355588999997 4999887654321 4 9
Q ss_pred CCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCC
Q 012529 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP 117 (461)
Q Consensus 81 ~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~ 117 (461)
.+||+|.+.|.+.....+ .+||.+.+...+.+|..
T Consensus 68 ~~Gdvv~i~g~vk~~~~g--~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 68 GRGDYVRVRGYIREGYYG--GLECTANYVEILKKGEK 102 (105)
T ss_dssp CTTCEEEEEEEEEECTTS--SEEEEEEEEEEEECCC-
T ss_pred CCCCEEEEEEEEEEccCC--CEEEEeCCceEEEeccc
Confidence 999999999999886533 79999999999999863
No 67
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.21 E-value=0.053 Score=43.34 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=61.2
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeee---c----C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR---A----Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R---~----~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (461)
..|+||.+ +..|.|.|+|.++- . . +++.=+.|.|.|| +|.+++-.+... + . +.
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~ 65 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VK 65 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CC
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cC
Confidence 45666653 36799999998863 2 1 2466688899997 499988765321 1 4 99
Q ss_pred CCcEEEEEeeEeecCCCCccEEEEEeEEEEeccC
Q 012529 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 82 ~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~ 115 (461)
.||+|.|.|.+..... .+||.+.+...+-+|
T Consensus 66 ~Gdvv~i~g~v~~~~~---~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 66 KGDIAEVSGYVKQGYS---GLEISVDNIGIIEKS 96 (97)
T ss_dssp TTCEEEEEEEEEEC-----CEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEcCC---eEEEEECCCcEEEEC
Confidence 9999999999866533 699999998888776
No 68
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=96.21 E-value=0.0045 Score=64.52 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=38.7
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||.+...+.+|.+||+|++.-+... |+.|+...++.+++.+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999987541246999999999888775 6888888888776643
No 69
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=95.72 E-value=0.015 Score=62.86 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhh-hCCcEEEecceeec
Q 012529 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITA 177 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~ 177 (461)
-.=.+++..|.+.+|+.|. ..||.||.||+|++
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 4467889999999999998 56999999999997
No 70
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.71 E-value=0.036 Score=45.60 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=57.9
Q ss_pred CCCEEEEEEEEeee---e----cC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC
Q 012529 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (461)
Q Consensus 28 ~~~~v~v~G~v~~~---R----~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~ 97 (461)
.|+.+.+.|.|.++ | .. +++..+.|.|+|| .|.+++-.+... .... +..|++|.|.|.+....-
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~--~~~~--l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIK--LLKK--FREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGG--GGGT--CCTTSEEEEEEEEECCCS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhh--hhhc--CCCCCEEEEEeeEEcccc
Confidence 46789999999988 2 12 4688899999997 499988866432 1235 999999999999865422
Q ss_pred CCccEEEEEeEEEEeccC
Q 012529 98 SKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 98 ~~~~~el~~~~i~vl~~~ 115 (461)
. +.++|.+.+...+.++
T Consensus 89 ~-g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 89 G-GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp S-SSCEEEECTTCCEEEE
T ss_pred C-CeEEEEECCCceEEEC
Confidence 1 2578888665555444
No 71
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.51 E-value=0.018 Score=59.27 Aligned_cols=121 Identities=8% Similarity=-0.056 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHH-h-hhCCcEEEecceeecCCC-CCC--CcceeeeecCCC----c---------------ccccCC
Q 012529 147 VARVRNALAYATHKF-F-QENGFIWISSPIITASDC-EGA--GEQFCVTTLIPS----S---------------REAAES 202 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~f-f-~~~gF~EV~TPiL~~~~~-eg~--~~~F~v~~~~~~----~---------------~~~~~s 202 (461)
=.+++..|.+.+++- + .+.|+.||.||+|.+..- .+. ++.|..+.+... . ......
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 467889999988877 4 589999999999998652 211 121111111100 0 000001
Q ss_pred cccc------CCCcc-ccCcCc-ceeEEEecccc---cCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 203 PVDA------IPKTK-DGLIDW-SQVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 203 ~~~~------l~~~~-~~~~~~-~rVfeI~~~FR---~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
|+.+ .+... +....+ =+++|||+||| ||-+ .+| .-||||.|++. |++.++..+..+.++...
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s--~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~ 217 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ--TPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHR 217 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc--CCCCccccCceehhheEE-EeCHhhHHHHHHHHHHHH
Confidence 1000 00000 000011 25999999999 6854 244 45999999995 788887766666665554
Q ss_pred HHH
Q 012529 268 VRY 270 (461)
Q Consensus 268 ~~~ 270 (461)
..-
T Consensus 218 ~~~ 220 (454)
T 1g5h_A 218 LLW 220 (454)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 72
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=95.21 E-value=0.13 Score=48.99 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=56.8
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch-hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~-~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
..|++.|+|.++...+...-+.|.|+|| ..|.|.+..+...- ..... +..|++|.|.|++..-.. ...|.+..
T Consensus 72 ~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~G~yVrV~G~v~~f~g---~~qi~i~~ 145 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 145 (270)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCCCCEEEEEEEEEecCC---eeEEEEEE
Confidence 3699999999998887777778999997 14888887543210 01234 899999999999977543 46678877
Q ss_pred EEEecc
Q 012529 109 IVLVGK 114 (461)
Q Consensus 109 i~vl~~ 114 (461)
|..+..
T Consensus 146 ir~v~d 151 (270)
T 2pi2_A 146 IMPLED 151 (270)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 776655
No 73
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.16 E-value=0.062 Score=43.84 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=57.9
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEee
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~ 91 (461)
.++++++.. ..+..|++.|.|.+.-..-. ..++|++| .|+|-++.+. ....-+++++-|.+.|.
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d~---Y~F~D~TG--~I~VeId~~~-----w~g~~v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDDL---YVFKDASG--TINVDIDHKR-----WNGVTVTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEECCGGG-----STTCCCCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCCe---EEEECCCc--cEEEEEChhh-----cCCcccCCCCEEEEEEE
Confidence 345555542 56789999999976443322 57799997 4888776542 22222899999999999
Q ss_pred EeecCCCCccEEEEEeEEEEecc
Q 012529 92 VVPSQGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~vl~~ 114 (461)
|.+.-. ..||.|+.|++|.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 986432 46899999988753
No 74
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=95.11 E-value=0.13 Score=51.63 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=61.2
Q ss_pred CCCEEEEEEEEeee-ec-CCCeEEEEEEcCccCccEEEEEeCCCcchhh-hhhcCCCCCcEEEEEeeEeecCCCCccEEE
Q 012529 28 VGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (461)
Q Consensus 28 ~~~~v~v~G~v~~~-R~-~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el 104 (461)
....+.|.|.|.+. +. .|+=.|+.|.|+++ .|.|++=.....|.. ++. |..||.|.|.|.+.. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~------g-tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK------D-TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETTTEEEEEEEETTE--EEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET------T-EE
T ss_pred cCceEEEEEEEecCcEeccCceEEEEEEcCCC--EEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC------C-EE
Confidence 45789999999998 65 48889999999864 599988553334544 456 999999999999755 1 79
Q ss_pred EEeEEEEeccC
Q 012529 105 KVNKIVLVGKS 115 (461)
Q Consensus 105 ~~~~i~vl~~~ 115 (461)
.++++.+++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999999775
No 75
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=94.86 E-value=0.02 Score=59.58 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=38.6
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
|+||||+|||.|...+..|.+||+|++..+... |+.+++..++.++..
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~ 256 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQ 256 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 699999999986541357999999999998874 688888877777654
No 76
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=94.72 E-value=0.034 Score=59.13 Aligned_cols=112 Identities=10% Similarity=0.032 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC--C------CCCcceeeeecCCCcc---cccCCccccCCCccc---cCcCc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSR---EAAESPVDAIPKTKD---GLIDW 217 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e------g~~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~---~~~~~ 217 (461)
.++.+.+|+.|...||.|+-|+.+++..- + +..+.+.+ .|+.+. .+.+|....|-...+ ....=
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L--~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~ 471 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI--SNPKTAEFQVARTTLLPGLLKTIAANRKMPLP 471 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB--SSCSSGGGSEECSCSHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE--cCCCchhHhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45678899999999999999999987421 1 11222322 122111 011121111000000 00001
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
=|+||+|+|||.+.. ..+|.+|+.++..-+... ++.++...++.++..
T Consensus 472 vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 472 LKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 379999999998755 467889999998765543 577776666655543
No 77
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=94.55 E-value=0.24 Score=45.32 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=58.6
Q ss_pred CCEEEEEEEEeeeecCC--------CeEEEEEEcCccCc-cEEEEEeCCCcchhh----hhhcCCCCCcEEEEEeeEeec
Q 012529 29 GLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCLS-NMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPS 95 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~~--------~~~Fi~l~D~s~~~-~iQvv~~~~~~~~~~----~~~~~l~~g~~V~v~G~~~~~ 95 (461)
=+.|.|.|.|..++..- ...|+.|-|.||.. .|.|.++... +.. +.. ...|.+|.|+|++..-
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~--~~~~gl~l~~--~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ--FKEVGLTLDK--KNYGKIVELEGEIYNW 160 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH--HHTTTCCTTS--CCTTCEEEEEEEEEEC
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH--hhccCccccc--cCCCeEEEEEEEEEee
Confidence 36799999999997652 45899999999852 4666655321 211 112 4589999999999875
Q ss_pred CC-----CCccEEEEEeEEEEeccC
Q 012529 96 QG-----SKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 96 ~~-----~~~~~el~~~~i~vl~~~ 115 (461)
.. +.-.-||+++++++++..
T Consensus 161 r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 161 YDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccccceEEEEEEEEEeccC
Confidence 32 111359999999999875
No 78
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=94.38 E-value=0.059 Score=59.27 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCCC----CCCc-ceeeeecCCCcc---cccCCccccCCCcccc----CcCcc
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDCE----GAGE-QFCVTTLIPSSR---EAAESPVDAIPKTKDG----LIDWS 218 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e----g~~~-~F~v~~~~~~~~---~~~~s~~~~l~~~~~~----~~~~~ 218 (461)
...+.+.+|+.|...||.|+.|..+++...- +..+ .+.+ .|+.+. .+.++....+-...+. +..==
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L--~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~v 572 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL--LMPMSEAHATLRQSLLPHLIEATAYNVARKNKDV 572 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEEC--SSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEE--cCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCe
Confidence 3467788999999999999999999876321 1112 2222 122110 0111110000000000 00012
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc-------------CCHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~-------------~d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||.+.. ...| +||+++..=++. .|+.++...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 79999999996543 2256 899999865443 57889999999988765
No 79
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=93.74 E-value=0.052 Score=57.23 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.6
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||++..-+.+|.+||+|++.-+... |+.|+...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999986531357999999999888774 7899999999988765
No 80
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=93.70 E-value=0.053 Score=57.23 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.6
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||++..-+.+|.+||+|++.-+... |+.|+...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999986541357999999999888774 7899999999988765
No 81
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=93.69 E-value=0.053 Score=57.31 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.8
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||++...+.+|.+||+|++.-+... |+.|+...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999986541357999999999888774 7899999999988765
No 82
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=93.60 E-value=0.88 Score=36.90 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=56.5
Q ss_pred CCEEEEEEEEeeeecC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE-eeEeecCCCCccEEE
Q 012529 29 GLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVEL 104 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~-G~~~~~~~~~~~~el 104 (461)
++.|.+.|.|.++-.. +....+.|.|.||. |-+++..+. ++.. +..|++|.|. |.+..-+ +.++|
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~----~~~~--~~~G~~V~i~n~~v~~~~---G~~~L 83 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA----ELPL--LEQGESYLLRSVVVGEYN---DRFQV 83 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG----CCCC--CCTTCEEEEEEEEEEEET---TEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc----cccc--cCCCCEEEEEEEEEEEEC---CEEEE
Confidence 5779999999887542 33445789999975 998887632 1234 9999999999 6776643 25899
Q ss_pred EEeEEEEeccCCCC
Q 012529 105 KVNKIVLVGKSDPS 118 (461)
Q Consensus 105 ~~~~i~vl~~~~~~ 118 (461)
.+.+...+.+.+..
T Consensus 84 ~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 84 QVNKNSSIEKLSEP 97 (109)
T ss_dssp EECSSSEEEECSSC
T ss_pred EECCceEEEECCCc
Confidence 99877666655433
No 83
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=93.56 E-value=0.058 Score=57.18 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.8
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||++..-+.+|.+||+|++.-+... |+.|+...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999986531357999999999888774 7899999999988765
No 84
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=93.45 E-value=0.38 Score=39.98 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=49.6
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|++|++-|+|.+++..|+.+-+.-.|+ +.++|.++.... .. + +.+|.|.|+|.. ..+|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~l~s~Dg---~~Vtv~l~~p~~-----~~--l--~~~vEViG~V~~------~~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFILSDGEG---KNGTIELMEPLD-----EE--I--SGIVEVVGRVTA------KATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEEEECTTS---CEEEEECSSCCS-----SC--C--CSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCC-----cc--c--CcEEEEEEEECC------CCeEEE
Confidence 78999999999999997777543444455 347777654211 02 3 459999999953 346888
Q ss_pred eEEEEeccC
Q 012529 107 NKIVLVGKS 115 (461)
Q Consensus 107 ~~i~vl~~~ 115 (461)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 888777754
No 85
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=92.86 E-value=0.06 Score=49.44 Aligned_cols=113 Identities=13% Similarity=0.086 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-----CcceeeeecCCCcc---cccCCccccCCCcccc--CcCcc--
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC-EGA-----GEQFCVTTLIPSSR---EAAESPVDAIPKTKDG--LIDWS-- 218 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-----~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~~--~~~~~-- 218 (461)
.++.+.+|+.|...||.||-|-.+++... +.- .+. |.-.|+.+. .+.+|....|-...+- .-+..
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~--v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNL--VMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGC--EEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCe--EEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 36778899999999999999999987432 100 111 111222110 0111111010000000 00122
Q ss_pred eeEEEecccccCCCCCC-----CCccccccceeeecc-------------CCHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADLKDDMACATAYLQY 266 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~a~-------------~d~~dlm~~~e~li~~ 266 (461)
|+||||+||+.++.+.. .+..|..+|-.-++. .|+.|+...+|.++..
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~ 150 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKR 150 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHH
Confidence 69999999997653211 234577777765544 3566777766666654
No 86
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.82 E-value=0.25 Score=40.55 Aligned_cols=91 Identities=10% Similarity=0.185 Sum_probs=62.5
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeee---e------cCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R------AQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLIT 81 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~---R------~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~ 81 (461)
+.|++|... ...++|+|||.++ | ..|++.=++|.|.+| .|++++..+.. .|. .. |.
T Consensus 5 ~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~--~~--l~ 70 (114)
T 1ynx_A 5 FAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKFN--EI--LQ 70 (114)
T ss_dssp CCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHHH--HH--SC
T ss_pred EEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHHH--hh--cc
Confidence 456677653 2348888998854 2 236788889999997 59999976532 232 24 99
Q ss_pred CCcEEEEEe-eEeecCCC----CccEEEEEeEEEEeccCC
Q 012529 82 TGASIWIQG-NVVPSQGS----KQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 82 ~g~~V~v~G-~~~~~~~~----~~~~el~~~~i~vl~~~~ 116 (461)
.|+++.+.+ .|...... ...+||....-+.+.+|.
T Consensus 71 eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 71 EGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp SSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred cCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 999999995 55554321 357899988777777774
No 87
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=92.77 E-value=1.1 Score=36.18 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=60.2
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeeee-----cCCC---eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCc
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R-----~~~~---~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (461)
.|+||.+. ...|.+.|.|.++- +.|+ +.=+.|.|.||. |.+.+..+ . +..||
T Consensus 5 kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~--------~--l~~Gd 64 (106)
T 2k75_A 5 KIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGK--------Q--LQDSD 64 (106)
T ss_dssp CSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESS--------C--CCTTE
T ss_pred EHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcC--------c--cCCCC
Confidence 46666542 23477777776642 2343 666788999974 88887754 2 88999
Q ss_pred EEEEE-eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCc
Q 012529 85 SIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQK 123 (461)
Q Consensus 85 ~V~v~-G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~ 123 (461)
+|.+. |.+..-+ +.++|.+.+...+.+.....|+..
T Consensus 65 vv~i~ng~v~~~~---g~~~L~v~~~~~I~~~~~~~~~~~ 101 (106)
T 2k75_A 65 VVRIDNARVAQFN---GYLSLSVGDSSRIESVNVNIPLEH 101 (106)
T ss_dssp EEEEEEEEEEEET---TEEEEEECTTSEEEECCSCCCCSC
T ss_pred EEEEEeeEEeEEC---CEEEEEECCcEEEEECCCCCcccc
Confidence 99999 7776543 358999988777777665466643
No 88
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=92.01 E-value=0.93 Score=38.67 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=46.2
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|++|++.|+|.++-..|+.+ .+....+ ..|+|.++... . -..+-+|.|.|+|.. +.+|.+
T Consensus 41 fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~~~~~~VEViG~V~~------~~tI~~ 102 (142)
T 2pi2_E 41 FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATILC 102 (142)
T ss_dssp STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--ccCCCEEEEEEEECC------CCcEEE
Confidence 7899999999999884344433 5554433 34676654321 1 234779999999943 345777
Q ss_pred eEEEEeccC
Q 012529 107 NKIVLVGKS 115 (461)
Q Consensus 107 ~~i~vl~~~ 115 (461)
..+.-++..
T Consensus 103 ~~~~~fGd~ 111 (142)
T 2pi2_E 103 TSYVQFKED 111 (142)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777666653
No 89
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=91.95 E-value=0.73 Score=37.95 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=52.3
Q ss_pred EEEEEEEEeee---ec----CC--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE-eeEeecCCCCc
Q 012529 31 MIVVAGWVRTL---RA----QS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQ 100 (461)
Q Consensus 31 ~v~v~G~v~~~---R~----~~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~-G~~~~~~~~~~ 100 (461)
.|.+.|.|.++ |. .| .+.=+.|.|.||. |.+.+..+.. .. +..|++|.|. |.+..-+ +
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~~-----~~--~~~G~vv~i~~g~v~~~~---g 81 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKHA-----GS--IKEGQVVKIENAWTTAFK---G 81 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGGT-----TC--CCTTCEEEEEEEEEEEET---T
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECChh-----hc--CCCCCEEEEEeEEEEEeC---C
Confidence 58888999877 41 24 3566778899974 8988876432 24 8999999999 8886643 2
Q ss_pred cEEEEEeEEEEeccCC
Q 012529 101 KVELKVNKIVLVGKSD 116 (461)
Q Consensus 101 ~~el~~~~i~vl~~~~ 116 (461)
.++|.+.+...+.++.
T Consensus 82 ~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 82 QVQLNAGSKTKIAEAS 97 (119)
T ss_dssp EEEEEECTTCEEEECC
T ss_pred EEEEEECCCEEEEEcC
Confidence 5899988755555543
No 90
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=91.91 E-value=0.3 Score=40.15 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|+.|++-|+|.+.+. + . +.|..+.+ +.|+|.++... . +..+.+|.|.|++.....+-|+..|.+
T Consensus 16 ~~g~~VrivGkV~~~~g--~-~-~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG--N-T-LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET--T-E-EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC--C-E-EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999996 2 2 45664333 34777665432 2 557899999999964322212355555
Q ss_pred eE
Q 012529 107 NK 108 (461)
Q Consensus 107 ~~ 108 (461)
..
T Consensus 82 ~~ 83 (114)
T 4gop_A 82 FT 83 (114)
T ss_dssp CS
T ss_pred EE
Confidence 33
No 91
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=91.52 E-value=0.48 Score=39.00 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=40.8
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl 121 (461)
|+||+..+.... ++. |+.|+-|.|+|.+.........++|++++|+.|+.....-|+
T Consensus 49 i~vv~~Gk~AE~--~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLALL--LAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHHHH--HTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHHHh--hhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 788887654322 345 999999999999987433335799999999999876544555
No 92
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=90.43 E-value=0.19 Score=46.05 Aligned_cols=114 Identities=16% Similarity=0.048 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-----CcceeeeecCCCcc---cccCCccccCCCcccc--CcCcc--
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC-EGA-----GEQFCVTTLIPSSR---EAAESPVDAIPKTKDG--LIDWS-- 218 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-----~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~~--~~~~~-- 218 (461)
.++.+.+|+.|...||.||-|-.+++... +.. .+. |.-.|+.+. .+.+|....|-...+- .-+..
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~--v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMA--VELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGC--CBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCe--EEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 36778899999999999999999987431 100 011 111122110 0111111000000000 01122
Q ss_pred eeEEEecccccCCCCC-----CCCccccccceeeecc-------------CCHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNT-----SRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t-----~rHl~EFtmlE~e~a~-------------~d~~dlm~~~e~li~~i 267 (461)
|+||||+||+.++... ..+..|..+|-.-++. .|+.|+...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 6999999999754210 1234577777665543 47888888888877654
No 93
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=89.18 E-value=0.38 Score=52.69 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCC----CCCCcceeeeecCCCcc---cccCCccccCCCcccc----C-cCcc
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSR---EAAESPVDAIPKTKDG----L-IDWS 218 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~~----~-~~~~ 218 (461)
..++.+.+|+.|...||.|+-|-.+++... ....+.+.+ .|+.+. .+.++....+-...+. + ..=-
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L--~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~v 568 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL--LNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERA 568 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE--SSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE--cCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCe
Confidence 456788899999999999999988887531 001222333 122110 1111111000000000 0 0113
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc------------CCHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~------------~d~~dlm~~~e~li~~i 267 (461)
|+||+|+||| + .|+.++..=++. .|+.|+...+|.++..+
T Consensus 569 rlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 569 LLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 7999999999 2 688888865544 47889999999888765
No 94
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=87.79 E-value=4.5 Score=34.06 Aligned_cols=76 Identities=20% Similarity=0.347 Sum_probs=54.7
Q ss_pred CCCCCEEEEEEEEe--eeecC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCc
Q 012529 26 DRVGLMIVVAGWVR--TLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (461)
Q Consensus 26 ~~~~~~v~v~G~v~--~~R~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~ 100 (461)
...|+.++|.|.|. ++... ..+.| .|.|+. ..|.|....-.++ . .+-|.-|.|+|++...
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~--~~v~V~Y~GilPD-----l--FrEGqgVVa~G~l~~~----- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAE--GSVDVSYEGILPD-----L--FREGQGVVVQGELEKG----- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSS--CEEEEEEESCCCT-----T--CCTTSEEEEEEEECSS-----
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCC--cEEEEEECCCCCc-----c--ccCCCeEEEEEEECCC-----
Confidence 35789999999998 45432 34676 668875 4699998876543 2 6779999999999541
Q ss_pred cEEEEEeEEEEeccCCCCC
Q 012529 101 KVELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 101 ~~el~~~~i~vl~~~~~~~ 119 (461)
-.+.+++ ||.||+..|
T Consensus 90 -g~F~A~e--VLAKhdekY 105 (136)
T 1sr3_A 90 -NHILAKE--VLAKHDENY 105 (136)
T ss_dssp -SEEEESS--CBCCSCCCC
T ss_pred -CeEEEEE--EEecCCCCC
Confidence 2356655 899998764
No 95
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=86.59 E-value=5.6 Score=33.50 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=51.2
Q ss_pred CCCCCEEEEEEEEe--eeecC---CCeEEEEEEc-CccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCC
Q 012529 26 DRVGLMIVVAGWVR--TLRAQ---SSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (461)
Q Consensus 26 ~~~~~~v~v~G~v~--~~R~~---~~~~Fi~l~D-~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~ 99 (461)
...|+.++|.|.|. ++.+. ..+.| .|.| +. ..|.|+.+.-.++ . .+-|.-|.|+|++... +
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~~v~V~Y~GilPD-----l--FrEGqgVVa~G~l~~~--g- 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLG--GEILVTYDDLLPD-----L--FREGQGIVAQGVLGED--G- 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTC--CCEEEEECSCCTT-----S--CCSSSEEEEEEEECST--T-
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCC--CEEEEEECCCCCc-----c--ccCCCeEEEEEEECCC--C-
Confidence 36789999999996 45432 45776 5678 54 4589988765542 2 6789999999999542 1
Q ss_pred ccEEEEEeEEEEeccCCCCC
Q 012529 100 QKVELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 100 ~~~el~~~~i~vl~~~~~~~ 119 (461)
.+++++ ||.||+..|
T Consensus 96 ---~F~A~e--VLaKhdekY 110 (136)
T 1j6q_A 96 ---KLAATE--VLAKHDENY 110 (136)
T ss_dssp ---SEEEEE--EECCC----
T ss_pred ---eEEEEE--EEecCCCCC
Confidence 255654 899998764
No 96
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=85.75 E-value=0.25 Score=51.42 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=25.0
Q ss_pred cCCC-CCccccccHHHHHHHHcCCCCcccc
Q 012529 421 YGSV-PHAGFGLGFERLVQFATGVENIRDA 449 (461)
Q Consensus 421 ~G~p-P~gG~giGidRLvm~l~g~~~Irdv 449 (461)
+|++ |.-.||||+|||+|++.|.++||+.
T Consensus 317 ~gi~~~v~afeLgLErLaMl~~gi~DIR~~ 346 (534)
T 2du3_A 317 YDIPYPVMNLGLGVERLAMILYGYDDVRKM 346 (534)
T ss_dssp TTCCSCEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred cCCCCcEEEEEecHHHHHHhhcCCchhhhh
Confidence 4554 6788999999999999999999875
No 97
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=85.53 E-value=0.81 Score=52.24 Aligned_cols=80 Identities=11% Similarity=0.202 Sum_probs=47.9
Q ss_pred CCCCEEEEEEEEeeeecC---C--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 27 RVGLMIVVAGWVRTLRAQ---S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~---~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
..|+.|+|+|.|.++|.. + .++|+.|.|.+|. +.|++-++. |++.+ ..|..+.+|.|+|+|.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~--~evvvf~~~--~~~~~-~~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGA--LEVVVFGRA--YEGVS-PKLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEE--EEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCC--EEEEEcHHH--HHHHH-HHhccCCEEEEEEEEEECC----C
Confidence 357889999999998763 2 4999999999974 888876653 33332 2389999999999997643 3
Q ss_pred EEEEEeEEEEeccC
Q 012529 102 VELKVNKIVLVGKS 115 (461)
Q Consensus 102 ~el~~~~i~vl~~~ 115 (461)
+.|.++++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 67888888877654
No 98
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=83.98 E-value=1.7 Score=34.92 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=35.6
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEe
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl 112 (461)
++|++-.+.. + +.. |..|+-|.|+|.+.........+.|++++|+.+
T Consensus 55 i~vv~~gk~A--e-~~~--l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA--E-EWQ--YRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH--H-HST--TCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh--h-hhc--cCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 5666654432 2 444 999999999999987765555799999999876
No 99
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=82.85 E-value=1.9 Score=39.92 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=61.4
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCC
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLI 80 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~---R~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l 80 (461)
-+.|++|... ...++|+|||.++ |. .|++.-++|.|.+| .|++++..+.. .| ... |
T Consensus 8 ~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~~--~~~--l 73 (246)
T 1jmc_A 8 VVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKF--FPL--I 73 (246)
T ss_dssp BCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHH--GGG--C
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHHHh--hhh--c
Confidence 3567777653 2357899999875 31 35667788999998 59999886432 12 123 9
Q ss_pred CCCcEEEEEe-eEeecC----CCCccEEEEEeEEEEeccCC
Q 012529 81 TTGASIWIQG-NVVPSQ----GSKQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 81 ~~g~~V~v~G-~~~~~~----~~~~~~el~~~~i~vl~~~~ 116 (461)
..|+++.+++ .|.+.. ...+.+||....-+.+.+|.
T Consensus 74 ~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 74 EVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred ccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 9999999996 454432 12357899887655566654
No 100
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=82.10 E-value=6 Score=30.76 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=46.6
Q ss_pred CCCCCEEEEEEEEeeeecC----CCeEEEE-EEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC
Q 012529 26 DRVGLMIVVAGWVRTLRAQ----SSVTFIE-VNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (461)
Q Consensus 26 ~~~~~~v~v~G~v~~~R~~----~~~~Fi~-l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~ 96 (461)
+..|+-|.|+|-|..+|+. |...||. .||......-.+.++-..-+...... |..|++..+.|.+....
T Consensus 46 dylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvea--lsngsvativgqvhqvq 119 (133)
T 3f1z_A 46 DYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEA--LSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTT--CCTTSEEEEEEECCCCC
T ss_pred hhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHh--hcCCceeeEeeeeeeee
Confidence 3578999999999999984 6677775 68875432223333322222233556 99999999999986543
No 101
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=80.80 E-value=0.47 Score=47.82 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=32.5
Q ss_pred ccccccCCce-eeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 374 AMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 374 ~fdl~~~G~~-Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
-|+.+.+|.| .|++|+- |+.|.+.+ | |-.|..||+||+|||+.++-..
T Consensus 282 vFe~~~~~~g~~i~~GGR----YD~L~~~f---G---------------~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 282 VFEGYGNRLGVPLCSGGR----YDELLSKF---H---------------RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEETTCSSEEEEEEE----CTTHHHHT---T---------------CCCCEEEEEEEHHHHHHHHCC-
T ss_pred EEEEEECCCCCeeecccc----cchhhhcc---C---------------CCCCEEEEEeeHHHHHHHHHhc
Confidence 4888888764 7777774 33333222 1 2258999999999999988654
No 102
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=78.62 E-value=0.94 Score=43.38 Aligned_cols=30 Identities=37% Similarity=0.686 Sum_probs=25.7
Q ss_pred cCCC-CCccccccHHHHHHHHcCCCCccccc
Q 012529 421 YGSV-PHAGFGLGFERLVQFATGVENIRDAI 450 (461)
Q Consensus 421 ~G~p-P~gG~giGidRLvm~l~g~~~Irdv~ 450 (461)
+|++ |...|+||+|||+|+..|.++||+..
T Consensus 247 ~~i~~~v~~~el~le~l~~~~~~~~dir~~~ 277 (290)
T 3qtc_A 247 WGIDKPWIGAGFGLERLLKVKHDFKNIKRAA 277 (290)
T ss_dssp GTCCSCEEEEEEEHHHHHHHHHTCSSGGGGS
T ss_pred CCCCCceEEEEECHHHHHHHHcCCcHHHHHh
Confidence 4554 78899999999999999999999653
No 103
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=78.00 E-value=10 Score=32.76 Aligned_cols=52 Identities=12% Similarity=0.237 Sum_probs=34.9
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec----CCCC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS----QGSK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~----~~~~--~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+.... ..+. |..|+.|.|+|.+... +.+. ..+||.|++|++|+..
T Consensus 58 i~vv~wg~~Ae~-~~~~--l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 58 HRIAFFNRLAEI-VGEY--LRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEETHHHHH-HHHH--CCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEhHHHHH-HHhh--cCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 677776543211 1245 9999999999999754 2222 2589999999999764
No 104
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=75.65 E-value=6.8 Score=31.19 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=33.2
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec--CCCCccEEEEEeEEEEecc
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS--QGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~--~~~~~~~el~~~~i~vl~~ 114 (461)
++|++-.+.... ..+. |+.|+-|.|+|.+... +.+....||++++++.|+.
T Consensus 50 ~~vv~~g~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQA-ITHS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTHH-HHTT--CCTTCEEEEEEEEEC--------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHHHH-HHhh--CCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECcC
Confidence 778777654321 1234 9999999999999865 2222348999999998864
No 105
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=74.05 E-value=4.5 Score=41.03 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=61.2
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLIT 81 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~---R~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~ 81 (461)
+.|++|... ...++|.|||.++ |. .|++.-++|.|.+| .|++++..+.. .|. .. |.
T Consensus 4 ~~I~~L~p~--------~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~--~~--l~ 69 (444)
T 4gop_C 4 YPIEGLSPY--------QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAVDRFY--PL--LQ 69 (444)
T ss_dssp CCSTTCCTT--------CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHHHHHT--TT--CC
T ss_pred eeHHHCCCC--------CcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHHHHHH--Hh--ee
Confidence 567777653 1357899999853 42 25777889999987 59999987532 121 23 99
Q ss_pred CCcEEEEEe-eEeecCC----CCccEEEEEeEEEEeccCC
Q 012529 82 TGASIWIQG-NVVPSQG----SKQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 82 ~g~~V~v~G-~~~~~~~----~~~~~el~~~~i~vl~~~~ 116 (461)
.|+++.+++ .|.+... ..+.+||....-+.+.+|.
T Consensus 70 eG~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~ 109 (444)
T 4gop_C 70 ENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECT 109 (444)
T ss_dssp TTCEEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECS
T ss_pred cCCEEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEcc
Confidence 999999995 4544321 2357899987655555553
No 106
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=73.36 E-value=28 Score=27.86 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=47.0
Q ss_pred CCEEEEEEEEee---eecC-CCeEEEEEE-------cCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEee-cC
Q 012529 29 GLMIVVAGWVRT---LRAQ-SSVTFIEVN-------DGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP-SQ 96 (461)
Q Consensus 29 ~~~v~v~G~v~~---~R~~-~~~~Fi~l~-------D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~-~~ 96 (461)
...|.+.|++.+ .|.. .+-+|..+. +.+ .-|-|++....... -. +..|+-|.|+|.+.. ..
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~--Dfi~ivvw~klAe~---~~--~~kG~~v~v~G~lrsy~~ 83 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETK--DYLPITISNRLFEG---MN--LEVGTRVKIEGQLRSYNR 83 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCE--EEEEEEEEGGGSTT---CC--CCTTCEEEEEEEEEEEEC
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCC--cEEEEEEEhHHhhH---Hh--hcCCCEEEEEEEEEecce
Confidence 456899999976 3432 333443331 222 23667776544321 13 668999999999964 21
Q ss_pred ----CC--CccEEEEEeEEEEec
Q 012529 97 ----GS--KQKVELKVNKIVLVG 113 (461)
Q Consensus 97 ----~~--~~~~el~~~~i~vl~ 113 (461)
.+ ..-+|+.|++++.|.
T Consensus 84 ~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 84 KSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp C--------EEEEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEEEEcc
Confidence 22 124899999999875
No 107
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=71.87 E-value=34 Score=26.75 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=51.2
Q ss_pred CCCCEEEEEEEEee--e-ec--CCCeEEEEEEcC--ccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCC
Q 012529 27 RVGLMIVVAGWVRT--L-RA--QSSVTFIEVNDG--SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (461)
Q Consensus 27 ~~~~~v~v~G~v~~--~-R~--~~~~~Fi~l~D~--s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~ 99 (461)
..++.++|.|-|.. + |. ...+.| .|.|+ .+ ..|.|....-.++ . .+-|.-|.|+|++...
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~-~~v~V~Y~GilPD-----l--FrEGqgVV~~G~l~~~---- 72 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTS-KTVWVLYKGAVPD-----T--FKPGVEVIIEGGLAPG---- 72 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTT-CEEEEEEESCCCT-----T--CCTTCEEEEEEEECTT----
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCC-cEEEEEECCCCCc-----c--ccCCCeEEEEEEEeCC----
Confidence 46789999999973 4 43 235676 56776 12 4699998876543 2 6779999999999431
Q ss_pred ccEEEEEeEEEEeccCCC
Q 012529 100 QKVELKVNKIVLVGKSDP 117 (461)
Q Consensus 100 ~~~el~~~~i~vl~~~~~ 117 (461)
+-.+.+++ ||.||+.
T Consensus 73 -~g~F~A~e--vLaKh~e 87 (94)
T 2kct_A 73 -EDTFKART--LMTKCPL 87 (94)
T ss_dssp -CSEEEEEE--EEESSCC
T ss_pred -CCEEEEeE--EEEeCCC
Confidence 12356654 8999964
No 108
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=70.48 E-value=22 Score=30.15 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=49.5
Q ss_pred CCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
=+.|.+.|-|... ..+. +.|+|+||.-.++. -.+.+ .- ...+..|.+|.|.|.+..... +-.|++.+
T Consensus 58 ~s~VWmQG~VV~~-~~g~---~~LdDgTG~~~v~g--~~~vp---~g-~p~l~~G~YVMV~G~v~~~s~---eP~i~AvK 124 (150)
T 3mxn_B 58 LAAVWMQGRVVMA-DRGE---ARLRDPSGDFSVRG--LERVP---RG-RPCLVPGKYVMVMGVVQACSP---EPCLQAVK 124 (150)
T ss_dssp CSEEEEEEEEEEE-ETTE---EEEEETTEEEEEEC--GGGSC---CC-SCCCSTTCEEEEEEEEEECSS---SCEEEEEE
T ss_pred eEEEEEEeEEEEe-CCCe---EEEECCCceEEEee--ccccC---CC-CcccCCCCEEEEEEEEEecCC---CceEEEEE
Confidence 3578999999986 4453 78999998522221 11111 00 123889999999999987432 56788888
Q ss_pred EEEeccC
Q 012529 109 IVLVGKS 115 (461)
Q Consensus 109 i~vl~~~ 115 (461)
+.=||..
T Consensus 125 m~DLS~~ 131 (150)
T 3mxn_B 125 MTDLSDN 131 (150)
T ss_dssp EEECCSC
T ss_pred eeeCCCC
Confidence 8888773
No 109
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=68.79 E-value=20 Score=29.95 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=37.2
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC--CCCccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ--GSKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~--~~~~~~el~~~~i~vl~~~ 115 (461)
++||+-.+....- .+. |+.|+-|.|+|.+.... .++..+.+++++++.|+..
T Consensus 67 i~vv~wGk~AE~~-~~y--l~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHENQAI-THS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGGGGG-GTT--CCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHHHHH-HHh--cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 7888876543211 234 99999999999998653 2334678899999999754
No 110
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=65.78 E-value=2.6 Score=43.91 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITA 177 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (461)
+.++..+|+.|...||.|+.+|.+.+
T Consensus 60 ~~~~~~ir~~f~~mGF~e~~~p~ies 85 (549)
T 2du7_A 60 METIERLRQAYLRMGFEEMINPVIVD 85 (549)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSCEE
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeEee
Confidence 46788999999999999999999975
No 111
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=65.48 E-value=38 Score=38.07 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=54.8
Q ss_pred CCEEEEEEEEeee--ecC--C-CeEEEEEEcCccCccEEEEE-eCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 29 GLMIVVAGWVRTL--RAQ--S-SVTFIEVNDGSCLSNMQCVM-TSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 29 ~~~v~v~G~v~~~--R~~--~-~~~Fi~l~D~s~~~~iQvv~-~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
...|+|.|.|-.+ |.. | .+.-+.|.|.+. +|.|.. .++...-+.+.. |+.|+.|.|.|.+....-. +++
T Consensus 17 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~--~~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~~ 91 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTN--SILVKMFSRDKEDAELMSG--VKKGMWVKVRGSVQNDTFV-RDL 91 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSC--EEEEEEECSSHHHHHHHHT--CCTTCEEEEEEEEEEETTT-TEE
T ss_pred cceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCC--CEEEEEeecccchHHHHhc--CCCCCEEEEEEEEEeccCC-cce
Confidence 3569999999754 432 3 455567899985 477744 333222223456 9999999999999876433 367
Q ss_pred EEEEeEEEEeccC
Q 012529 103 ELKVNKIVLVGKS 115 (461)
Q Consensus 103 el~~~~i~vl~~~ 115 (461)
.+.+.+|..+.+.
T Consensus 92 ~~~~~~~~~~~~~ 104 (1041)
T 3f2b_A 92 VIIANDLNEIAAN 104 (1041)
T ss_dssp EEEEEEEEEECCC
T ss_pred EEEeeeeEEeccc
Confidence 7888888766653
No 112
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=65.48 E-value=15 Score=27.43 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=34.5
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
.|+. +.|.|.++...| +|++|.++ +...+..+.......+. ++.||.|.|.
T Consensus 5 ~G~i--v~G~V~~v~~~G--~fV~l~~~-----~~Gllh~sel~~~~~~~--~~~Gd~V~v~ 55 (80)
T 2k52_A 5 PGKF--YKGVVTRIEKYG--AFINLNEQ-----VRGLLRPRDMISLRLEN--LNVGDEIIVQ 55 (80)
T ss_dssp TTCE--EEEEEEEEETTE--EEEEEETT-----EEEEECGGGCSSCCGGG--CCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCCE--EEEEECCC-----CEEEEEHHHCCccccee--eCCCCEEEEE
Confidence 4554 789999998876 89999754 56666654321111234 9999999876
No 113
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=64.50 E-value=13 Score=29.60 Aligned_cols=46 Identities=9% Similarity=0.191 Sum_probs=31.4
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEE
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~ 110 (461)
|+||+..+... .+.. +..|+-|.|+|.+.........+-++++.++
T Consensus 50 i~vv~wGk~AE--~~~~--~~kGs~V~VeGrL~trs~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMAS--VLDR--IAPGTVLECVGFLARKHRSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHHH--HHTT--SCTTCEEEEEEEEEECC----CEEEEEEEEE
T ss_pred EEEEEEhHHHH--HHhh--cCCCCEEEEEEEEEeCcCCCCeeEEEEeccc
Confidence 78888764322 2345 8899999999999876655556778887765
No 114
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=61.58 E-value=25 Score=32.78 Aligned_cols=82 Identities=7% Similarity=0.178 Sum_probs=49.5
Q ss_pred CEEEEEEEEee---eecC-CCeEEE--EE-EcCc-------cCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec
Q 012529 30 LMIVVAGWVRT---LRAQ-SSVTFI--EV-NDGS-------CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (461)
Q Consensus 30 ~~v~v~G~v~~---~R~~-~~~~Fi--~l-~D~s-------~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~ 95 (461)
..|++.|+|.+ +|.. ++..++ .| .+.. ...-+.|++-.+.... +.. |..||.|.|+|.+...
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~--~~~--l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEW--ASE--LRKGDGLLVIGRLVND 204 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHH--HTT--CCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHH--hhh--cCCCCEEEEEEEEEee
Confidence 57889999987 5543 222322 22 1211 0113677766432211 224 9999999999999764
Q ss_pred C----CCC--ccEEEEEeEEEEeccC
Q 012529 96 Q----GSK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 96 ~----~~~--~~~el~~~~i~vl~~~ 115 (461)
. .++ ..+||.|++|..|+..
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred EEECCCCCEEEEEEEEEEEEEECccc
Confidence 2 232 2478999999988753
No 115
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=58.97 E-value=45 Score=31.80 Aligned_cols=81 Identities=14% Similarity=0.319 Sum_probs=49.6
Q ss_pred CEEEEEEEEee---eecC-CCeEEE--EE------EcCcc-----CccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeE
Q 012529 30 LMIVVAGWVRT---LRAQ-SSVTFI--EV------NDGSC-----LSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNV 92 (461)
Q Consensus 30 ~~v~v~G~v~~---~R~~-~~~~Fi--~l------~D~s~-----~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~ 92 (461)
..|++.|+|.+ +|.. .+..++ .| +|..| ..-+.|++-.+.. +.+.. |..|+.|.|+|.+
T Consensus 130 N~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~A--e~~~~--l~KG~~V~V~GrL 205 (301)
T 1se8_A 130 NEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLA--ENMKE--LRKGDPVMIMGRL 205 (301)
T ss_dssp EEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHH--HHHTT--CCTTCEEEEEEEE
T ss_pred eEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHH--HHHHh--cCCCCEEEEEEEE
Confidence 45889999987 5643 222222 22 12111 1136677665422 12434 9999999999999
Q ss_pred eecC----CC--CccEEEEEeEEEEecc
Q 012529 93 VPSQ----GS--KQKVELKVNKIVLVGK 114 (461)
Q Consensus 93 ~~~~----~~--~~~~el~~~~i~vl~~ 114 (461)
.... .+ ...+||.+++|++|..
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 7643 12 1258999999999875
No 116
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=56.56 E-value=2.5 Score=43.15 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=16.6
Q ss_pred CCCccccccHHHHHHHHcC
Q 012529 424 VPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 424 pP~gG~giGidRLvm~l~g 442 (461)
.|..|||||+|||+.+|-.
T Consensus 333 ~PavGFaig~eRl~~~l~~ 351 (456)
T 3lc0_A 333 IPCAGFGFGDCVIVELLQE 351 (456)
T ss_dssp CCEEEEEEESSHHHHHHHH
T ss_pred CCEEEEEeEHHHHHHHHHh
Confidence 4899999999999998853
No 117
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=56.39 E-value=4.9 Score=42.44 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITA 177 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (461)
+.++..+|+.|...||.|+.+|.+.+
T Consensus 68 ~~~~~~IR~if~~mGF~E~~~p~ves 93 (648)
T 2odr_B 68 NDTIENLRQAYLRMGFEEYINPVIVD 93 (648)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEee
Confidence 36788899999999999999999975
No 118
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=55.97 E-value=5 Score=42.44 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITA 177 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (461)
+.++..+|+.|...||.|+.+|.+.+
T Consensus 68 ~~~~~~IR~if~~mGF~E~~~p~ves 93 (665)
T 2odr_A 68 NDTIENLRQAYLRMGFEEYINPVIVD 93 (665)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEee
Confidence 36788899999999999999999975
No 119
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=55.86 E-value=5 Score=42.52 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITA 177 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (461)
+.++..+|+.|...||.|+.+|.+.+
T Consensus 68 ~~~~~~IReif~~mGF~E~~~p~ves 93 (685)
T 2odr_D 68 NDTIENLRQAYLRMGFEEYINPVIVD 93 (685)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEee
Confidence 36788899999999999999999975
No 120
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=55.19 E-value=4.9 Score=39.87 Aligned_cols=46 Identities=22% Similarity=0.536 Sum_probs=30.4
Q ss_pred ccccccCCce-eeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 374 AMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 374 ~fdl~~~G~~-Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
-|+.+.+|.| .|++|+- |+.|.+.+ | +-.|..||+||+|||+.+|-
T Consensus 318 vFe~~~~~~g~~i~~GGR----YD~L~~~f---G---------------~~~pAvGFaiglerL~~~l~ 364 (373)
T 3rac_A 318 VFEMFAPGVGAPIAQGGR----YDELLAQF---G---------------AGAPAVGFAFEVERVMAVLE 364 (373)
T ss_dssp EEEEECTTCSSCSEEEEE----CTTTTGGG---T---------------CCCCCEEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCeEeeccc----ccHHHHhh---C---------------CCCCeEEEEEEHHHHHHHHH
Confidence 4888888764 6777764 22221111 1 22589999999999998764
No 121
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=54.91 E-value=5.3 Score=42.44 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITA 177 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (461)
+.++..+|+.|...||.|+.+|.+.+
T Consensus 68 ~~~~~~IReif~~mGF~Ev~~p~Ves 93 (701)
T 2odr_C 68 NDTIENLRQAYLRMGFEEYINPVIVD 93 (701)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEee
Confidence 36788899999999999999999975
No 122
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=53.10 E-value=5.2 Score=39.18 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=31.3
Q ss_pred ccccccCCce-eeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 374 AMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 374 ~fdl~~~G~~-Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
-|+.+.+|.+ -|++|+ ||+.+.+.+ | . ..|..||+||+|||++++.
T Consensus 289 vFe~~~~~~~~~i~~GG----RYD~L~~~f---g-~--------------~~pavGfaiglerl~~~l~ 335 (344)
T 1z7m_A 289 MFKAYSSAANQPILSGG----RYDQLLSNF---Q-E--------------EAFAIGFCCHMDTILKALE 335 (344)
T ss_dssp EEEEEETTEEEEEEEEE----ECHHHHHTS---S-S--------------CCCCEEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCeEeeCc----cHHHHHHHh---C-C--------------CCCeEEEEEEHHHHHHHHH
Confidence 4888887653 677776 445544322 2 0 2478999999999998875
No 123
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=52.65 E-value=17 Score=29.24 Aligned_cols=52 Identities=8% Similarity=0.181 Sum_probs=33.9
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC----CCC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~----~~~--~~~el~~~~i~vl~~~ 115 (461)
++|++-.+.... ..+. |..||.|.|+|.+.... .++ ..+||.|++|++|+..
T Consensus 52 ~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTAEN-TALY--CQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHHHH-HHHH--CCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHH-HHHh--CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 667665432211 1245 99999999999997542 222 3589999999999764
No 124
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=51.84 E-value=4.3 Score=41.50 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=31.2
Q ss_pred ccccccCCc---eeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCC-CCCccccccHHHHHHHHcC
Q 012529 374 AMDMLVPRI---GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS-VPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 374 ~fdl~~~G~---~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~-pP~gG~giGidRLvm~l~g 442 (461)
-|+.+.+|. +-|++|+-. +.| +..+. |. .|..|||||+|||+..|..
T Consensus 310 vFe~~~~~~~~~~~i~~GGRY----D~L-----------------~~~f~-g~~~pavGfaiGieRli~~L~e 360 (465)
T 3net_A 310 VYETTLIGHEALGSICSGGRY----EEL-----------------VGTFI-GEKMPGVGISIGLTRLISRLLK 360 (465)
T ss_dssp EEEEEETTCGGGCCSSEEEEE----SSS-----------------SGGGT-CSCCCEEEEEEEHHHHHHHHHH
T ss_pred EEEEEECCCCccceecccccH----HHH-----------------hhhhc-CCCCceeeeeccHHHHHHHHHH
Confidence 488888774 467777642 222 12112 33 5889999999999998864
No 125
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=51.80 E-value=41 Score=29.91 Aligned_cols=83 Identities=14% Similarity=0.263 Sum_probs=47.0
Q ss_pred CEEEEEEEEee---eecC-CC--eEEEEEE------cC-cc-----CccEEEEEeCC-CcchhhhhhcCCCCCcEEEEEe
Q 012529 30 LMIVVAGWVRT---LRAQ-SS--VTFIEVN------DG-SC-----LSNMQCVMTSD-AEGYDQVKSGLITTGASIWIQG 90 (461)
Q Consensus 30 ~~v~v~G~v~~---~R~~-~~--~~Fi~l~------D~-s~-----~~~iQvv~~~~-~~~~~~~~~~~l~~g~~V~v~G 90 (461)
.+|+|.|+|.+ +|.. .+ ++-+.|- |. ++ ..-+.|++-.+ .... ..+. |..|+.|.|+|
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~-~~~y--L~KGs~V~VeG 103 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKV-VEQY--LKKGSKIYIEG 103 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHH-HHHH--CCTTCEEEEEE
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHH-HHhh--cCCCCEEEEEE
Confidence 56999999987 5653 22 3322221 11 11 12266766542 2211 1245 99999999999
Q ss_pred eEeec----CCCC--ccEEEEEe----EEEEeccC
Q 012529 91 NVVPS----QGSK--QKVELKVN----KIVLVGKS 115 (461)
Q Consensus 91 ~~~~~----~~~~--~~~el~~~----~i~vl~~~ 115 (461)
.+... +.++ ..+||.|+ +|++|+..
T Consensus 104 rL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 104 QLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 99754 2222 25788887 57777753
No 126
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=47.62 E-value=8.4 Score=35.88 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=41.3
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHH-cCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 448 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ird 448 (461)
.+--.+|+.++|| ||.-=- -|.. -|++ --|.++=+--|+|||.|.|-|.+||-|
T Consensus 134 AwGLGWEVWldGM-EITQFT-----------YFQQvGGi~-------------c~pv~~EITYGLERiamylQ~vd~vyd 188 (298)
T 1j5w_A 134 AWGVGWEVWLDGM-EITQFT-----------YFQQIGGIS-------------LKDIPLEITYGLERIAMYLQGVDNVYE 188 (298)
T ss_dssp EEEEEEEEEETTE-EEEEEE-----------EEEEBTTBC-------------CSSCCEEEEEEHHHHHHHHHTCSSGGG
T ss_pred cccccceeeEcce-eeehhh-----------hhhhcCCcc-------------cCccceeecccHHHHHHHHhCCCceec
Confidence 3556899999998 986310 0011 1232 147788899999999999999999999
Q ss_pred ccc
Q 012529 449 AIP 451 (461)
Q Consensus 449 v~~ 451 (461)
...
T Consensus 189 l~w 191 (298)
T 1j5w_A 189 VQW 191 (298)
T ss_dssp CEE
T ss_pred ccc
Confidence 864
No 127
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=46.99 E-value=9.1 Score=35.85 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=41.8
Q ss_pred cceeccccccCCceeeech--hhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCcc
Q 012529 370 RTVAAMDMLVPRIGELIGG--SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIR 447 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g--~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ir 447 (461)
.+--.+|+.++|| ||.-= .|+. -|++ --|.++=+--|+|||.|.|-|.+||-
T Consensus 146 AWGLGWEVWldGM-EVTQFTYFQQv------------GGi~-------------c~pv~~EITYGLERlamylQ~vd~vy 199 (311)
T 3rf1_A 146 AWGLGWEVWLDGM-EVTQFTYFQQV------------GGIA-------------VDLVSAEITYGLERIAMYLQNVDNVY 199 (311)
T ss_dssp EEEEEEEEEETTE-EEEEEEEEEEE------------TTEE-------------CSSCCEEEEEEHHHHHHHHTTCSSGG
T ss_pred ccccceEEEEcCe-eEeeeeeeeee------------CCcc-------------ccccceeeehhHHHHHHHHhCCCeee
Confidence 4567899999998 98631 1111 1222 13778889999999999999999999
Q ss_pred ccccC
Q 012529 448 DAIPF 452 (461)
Q Consensus 448 dv~~F 452 (461)
|...=
T Consensus 200 Dl~w~ 204 (311)
T 3rf1_A 200 DIVWS 204 (311)
T ss_dssp GSEEE
T ss_pred ecccc
Confidence 98653
No 128
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=46.54 E-value=10 Score=30.29 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=34.0
Q ss_pred CCCCCccccceeeeccccCCC-cC--CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc---hhh
Q 012529 1 MGSKVGEFRKKLKIVDVKGGP-NE--GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ 74 (461)
Q Consensus 1 ~~~~~~~~~~~~~i~~i~~~~-~~--~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~---~~~ 74 (461)
|||.-|--..+..+|++...+ +. .....|+. +.|.|.++...| +|++|.++ +...+..+... ...
T Consensus 1 ~~~~~~~~~~~~~iKq~~~~p~~~~~~~~~~G~i--v~G~V~~v~~~G--~fV~l~~~-----~~Gll~~sel~~~~~~~ 71 (109)
T 2khj_A 1 MGSSHHHHHHSSGLVPRGSHMFNNWVALNKKGAI--VTGKVTAVDAKG--ATVELADG-----VEGYLRASEASRDRVED 71 (109)
T ss_dssp --------------------CHHHHTTTCCSSSE--EEEEEEEECSSC--EEEECSTT-----CBCCBCTTCCCSSSSSS
T ss_pred CCccccccccccchhhcccCHHHHHhhcCCCCCE--EEEEEEEEECCe--EEEEECCC-----CEEEEEHHHcCcccccC
Confidence 566666555566677766532 11 11234664 679999998876 89999653 34444443311 111
Q ss_pred h-hhcCCCCCcEEEEE
Q 012529 75 V-KSGLITTGASIWIQ 89 (461)
Q Consensus 75 ~-~~~~l~~g~~V~v~ 89 (461)
. .. ++.||.|.|.
T Consensus 72 ~~~~--~~vGd~V~v~ 85 (109)
T 2khj_A 72 ATLV--LSVGDEVEAK 85 (109)
T ss_dssp GGGS--CCTTCEEEEE
T ss_pred hhhc--cCCCCEEEEE
Confidence 1 23 8899998876
No 129
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=45.84 E-value=30 Score=29.53 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=47.4
Q ss_pred CEEEEEEEEee---eecC-CCeEEE--EEE-cC------cc----CccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeE
Q 012529 30 LMIVVAGWVRT---LRAQ-SSVTFI--EVN-DG------SC----LSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNV 92 (461)
Q Consensus 30 ~~v~v~G~v~~---~R~~-~~~~Fi--~l~-D~------s~----~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~ 92 (461)
..|+|.|+|.+ +|.. ++..++ .|. +. .| ..-+.|++-.+.... ..+. |+.|+.|.|+|.+
T Consensus 17 N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~-~~~~--l~KG~~V~VeGrL 93 (153)
T 1z9f_A 17 NKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEF-ARTY--LTKGRLVLVEGEM 93 (153)
T ss_dssp CCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHH-HHHH--CCTTCEEEEEEEE
T ss_pred eEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHH-HHhh--CCCCCEEEEEEEE
Confidence 45888999877 4543 222222 221 21 11 113666665432211 1345 9999999999999
Q ss_pred eecC----CC--CccEEEEEeEEEEeccC
Q 012529 93 VPSQ----GS--KQKVELKVNKIVLVGKS 115 (461)
Q Consensus 93 ~~~~----~~--~~~~el~~~~i~vl~~~ 115 (461)
.... .+ ...+||.|++|.+|+..
T Consensus 94 ~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 94 RMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEC-------CCCEEEEEEEEEEECC--
T ss_pred EeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 7643 12 23589999999999764
No 130
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=44.09 E-value=77 Score=25.85 Aligned_cols=60 Identities=8% Similarity=0.186 Sum_probs=41.6
Q ss_pred EEEEcCccCccEEE-EEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC-CCccEEEEEeEEEEeccC
Q 012529 50 IEVNDGSCLSNMQC-VMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG-SKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 50 i~l~D~s~~~~iQv-v~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~-~~~~~el~~~~i~vl~~~ 115 (461)
+.|+||.. .+|. ++......+ ++.+.|+.|++|.+.=....+-. + .--|.+.+++||..+
T Consensus 47 l~lSDG~~--~~~~~mLatqln~~--v~~g~l~~~sIirl~~y~~~~v~~~--k~vliIl~levl~~~ 108 (123)
T 2b29_A 47 LLMSDGLN--TLSSFMLATQLNPL--VEEEQLSSNCVCQIHRFIVNTLKDG--RRVVILMELEVLKSA 108 (123)
T ss_dssp EEEECSSE--EEEEEEECGGGHHH--HHTTSSCTTCEEEEEEEEEEECSSS--CEEEEEEEEEEEECS
T ss_pred EEEECcch--heeeehhHHHHHHH--HhcCCccCCCEEEEEEEEEEEecCC--cEEEEEEeeEEeecc
Confidence 78999985 5998 887654322 44456999999999755333222 2 356788899999874
No 131
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=44.05 E-value=28 Score=37.92 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCCCEEEEEEEEeeeec--C--CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCC--CcEEEEEeeEeecCCCCc
Q 012529 27 RVGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT--GASIWIQGNVVPSQGSKQ 100 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~--~--~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~--g~~V~v~G~~~~~~~~~~ 100 (461)
..|+.|+|.|.|.+... . ++..=+.+.|++|. +++++=.. .| ..+. +.. |+.+.|.|++...+. .+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~f~~--~~-~~~~--~~~~~g~~~~~~G~~~~~~~-~~ 234 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQ--DY-LQTY--LKQLTGKEVFVTGTVKSNAY-TG 234 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSC--CT-THHH--HHTTCSSCEEEEEEECSCCT-TS
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCce--EEEEEECc--HH-HHhh--CccCCCCEEEEEEEEEEccC-CC
Confidence 34778999999987632 2 23344567899874 88877542 12 1234 777 999999999976310 12
Q ss_pred cEEEEEeEEEEec
Q 012529 101 KVELKVNKIVLVG 113 (461)
Q Consensus 101 ~~el~~~~i~vl~ 113 (461)
..++.--++.+..
T Consensus 235 ~~~~~~p~~~~~~ 247 (780)
T 1gm5_A 235 QYEIHNAEVTPKE 247 (780)
T ss_dssp SCCEEEEEEECSC
T ss_pred cEEEEcCEEeecc
Confidence 3455555555443
No 132
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=43.88 E-value=5.9 Score=40.38 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.9
Q ss_pred CC-CccccccHHHHHHHHcC
Q 012529 424 VP-HAGFGLGFERLVQFATG 442 (461)
Q Consensus 424 pP-~gG~giGidRLvm~l~g 442 (461)
|+ .+|||||+|||+..+..
T Consensus 330 p~~~~gfgiGveRli~al~e 349 (458)
T 2i4l_A 330 PIHGGSYGVGVSRLLGAIIE 349 (458)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred ceEEeeecccHHHHHHHHHH
Confidence 55 56999999999998754
No 133
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=43.77 E-value=6.9 Score=39.64 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=15.1
Q ss_pred CCccccccHHHHHHHHc
Q 012529 425 PHAGFGLGFERLVQFAT 441 (461)
Q Consensus 425 P~gG~giGidRLvm~l~ 441 (461)
|.-|||||+|||++++-
T Consensus 336 pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 336 PCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CEEEEEECHHHHHHHHH
T ss_pred CCccccccHHHHHHHHH
Confidence 78899999999998874
No 134
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=43.53 E-value=21 Score=29.52 Aligned_cols=36 Identities=14% Similarity=0.482 Sum_probs=26.8
Q ss_pred CCCCcEEEEEeeEeecC----CC--CccEEEEEeEEEEeccC
Q 012529 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~----~~--~~~~el~~~~i~vl~~~ 115 (461)
|..|+.|.|+|.+.... .+ ...+||.|++|.+|++.
T Consensus 86 l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 86 VKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp CCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 99999999999997642 22 23589999999998864
No 135
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=43.16 E-value=22 Score=29.53 Aligned_cols=52 Identities=13% Similarity=0.301 Sum_probs=35.3
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec----CCCC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS----QGSK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~----~~~~--~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+.... ..+. |..||.|.|+|.+... +.++ ..+||.|++|..|...
T Consensus 51 ~~v~~wg~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTAEI-ANQY--LSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHHHH-HHHH--CCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHHHH-HHHh--CCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 667665432211 1245 9999999999999764 2222 2478999999998753
No 136
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=43.04 E-value=46 Score=27.32 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=34.7
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc--h-hhh-hhcCCCCCcEEEEE
Q 012529 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQV-KSGLITTGASIWIQ 89 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~--~-~~~-~~~~l~~g~~V~v~ 89 (461)
.|+ .+.|.|.++...| +||+|.++ ++..+..+... + ... .. ++.||.|.|.
T Consensus 7 vG~--iv~G~V~~i~~~G--~FV~l~~~-----~~Glihisel~~~~~~~~~~~--~~vGd~V~vk 61 (130)
T 2k4k_A 7 VGS--VYTGKVTGLQAYG--AFVALDEE-----TQGLVHISEVTHGFVKDINEH--LSVGDEVQVK 61 (130)
T ss_dssp TTC--EEEEEEEEEETTE--EEEEEETT-----EEEEEEGGGTSSSCCSCGGGT--CCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCe--EEEEECCC-----cEEEEEHHHCCcccccCcccc--CCCCCEEEEE
Confidence 455 3689999998776 99999654 57777654321 1 112 24 8999998876
No 137
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=42.57 E-value=16 Score=39.88 Aligned_cols=111 Identities=11% Similarity=0.033 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCC----CCCCcceeeeecCCCcc---cccCCccccCCCcccc--CcCc--ceeEE
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSR---EAAESPVDAIPKTKDG--LIDW--SQVYT 222 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~~--~~~~--~rVfe 222 (461)
..+.+|+.|...||.|+-|-.+++... ....+. |.-.|+.+. .+.+|....|-...+- ..+. =|+||
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~--v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFE 571 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEA--LLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFE 571 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCC--CBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCe--EEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEE
Confidence 355789999999999999999987321 011111 111222111 0111211111000000 0012 36999
Q ss_pred EecccccCCCCCCCCccccccceeeecc-------------CCHHHHHHHHHHHHHHH
Q 012529 223 FGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 267 (461)
Q Consensus 223 I~~~FR~E~~~t~rHl~EFtmlE~e~a~-------------~d~~dlm~~~e~li~~i 267 (461)
||+||+.++. +..+..|-.+|=.-++. .|+.++...+|.++..+
T Consensus 572 iG~Vf~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 572 SGLRFVPDTQ-APLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEEEECTT-SSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eeeEEecCCC-cccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 9999987543 22333455555433222 37888888888777643
No 138
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=41.77 E-value=13 Score=37.00 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.9
Q ss_pred CCccccccHHHHHHHHcCC
Q 012529 425 PHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 425 P~gG~giGidRLvm~l~g~ 443 (461)
|.-|||||+|||+..+...
T Consensus 301 pa~Gf~igieRl~~~l~e~ 319 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEAE 319 (421)
T ss_pred CeEEEeecHHHHHHHHHhc
Confidence 4568999999999988753
No 139
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=39.25 E-value=7.6 Score=40.67 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=15.6
Q ss_pred CCC-ccccccHHHHHHHHcC
Q 012529 424 VPH-AGFGLGFERLVQFATG 442 (461)
Q Consensus 424 pP~-gG~giGidRLvm~l~g 442 (461)
+|+ ||||||+|||+..|..
T Consensus 435 ~p~~g~~giGveRli~~l~e 454 (572)
T 2j3l_A 435 SVIMGCYGIGVSRLLSAIVE 454 (572)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred eeeeeccccCHHHHHHHHHH
Confidence 565 4899999999988754
No 140
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=37.92 E-value=12 Score=38.72 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=15.5
Q ss_pred CCCccccccHHHHHHHHc
Q 012529 424 VPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 424 pP~gG~giGidRLvm~l~ 441 (461)
-|.-||++|+|||+.++-
T Consensus 388 ~pavGfa~gierl~~~le 405 (517)
T 4g85_A 388 VPCVGLSIGVERIFSIVE 405 (517)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCcccccchHHHHHHHHH
Confidence 378899999999998874
No 141
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=37.90 E-value=9.6 Score=38.34 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.1
Q ss_pred CCccccccHHHHHHHHcCC
Q 012529 425 PHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 425 P~gG~giGidRLvm~l~g~ 443 (461)
|.-|||||+|||+.++...
T Consensus 306 pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 306 PAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CEEEEEEEHHHHHHHHHHT
T ss_pred CeEEEEEcHHHHHHHHHhc
Confidence 5678999999999988754
No 142
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=37.55 E-value=1.8e+02 Score=24.36 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=53.1
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeeee----------c---------CCCeEEEEEEcCccCccEEEEEeCCCcchh
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLR----------A---------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD 73 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R----------~---------~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~ 73 (461)
.|+||.+. ..-|.|.|+|.++- . .+.++=+.|-|.||. |-+++..+.
T Consensus 18 kI~dL~pg--------~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~--I~ftlW~e~---- 83 (145)
T 1wjj_A 18 KVEQLKPG--------TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARNDQ---- 83 (145)
T ss_dssp CSTTCCTT--------CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTTH----
T ss_pred EHHHcCCC--------CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE--EEEEEecCC----
Confidence 46677653 23377777775542 1 345777889999975 777776542
Q ss_pred hhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEecc
Q 012529 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 74 ~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~ 114 (461)
+.. |..||+|.+.+-....-.+ .++|.+.+..-+.+
T Consensus 84 -~~~--l~~Gd~v~i~na~v~~~~G--~~~L~vgk~g~Ie~ 119 (145)
T 1wjj_A 84 -VDL--MKPGATVILRNSRIDMFKG--TMRLGVDKWGRIEA 119 (145)
T ss_dssp -HHH--TCTTCEEEEEEEEEEEETT--EEEEEECTTCCBCC
T ss_pred -cCc--CCCCCEEEEeccEEEeECC--EEEEEECCCEEEEE
Confidence 345 8999999998644333223 68898875433333
No 143
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=37.43 E-value=11 Score=38.48 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=16.8
Q ss_pred CCCccccccHHHHHHHHcCC
Q 012529 424 VPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 424 pP~gG~giGidRLvm~l~g~ 443 (461)
.|..||++|+|||+.+|...
T Consensus 327 ~PavGfa~gleRl~~~l~~~ 346 (467)
T 4e51_A 327 TAACGWAMGIERILELLKEE 346 (467)
T ss_dssp CCEEEEEEEHHHHHHHHHHT
T ss_pred CCceeehHHHHHHHHHHHhc
Confidence 46779999999999988653
No 144
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=36.36 E-value=10 Score=37.82 Aligned_cols=18 Identities=44% Similarity=0.909 Sum_probs=15.2
Q ss_pred CCccccccHHHHHHHHcC
Q 012529 425 PHAGFGLGFERLVQFATG 442 (461)
Q Consensus 425 P~gG~giGidRLvm~l~g 442 (461)
|.-|||||+|||+..+..
T Consensus 300 pavGf~igveRl~~~l~e 317 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQA 317 (423)
T ss_dssp CEEEEEEEHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHh
Confidence 455899999999998864
No 145
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=35.33 E-value=57 Score=26.07 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=35.3
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchh----hh-hhcCCCCCcEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----QV-KSGLITTGASIWIQ 89 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~----~~-~~~~l~~g~~V~v~ 89 (461)
..|+. +.|.|.++...| +|++|.++ +...+..+....+ .. +. ++.||.|.|.
T Consensus 29 ~~G~~--~~G~V~~v~~~G--~FV~l~~~-----~~Glvhisel~~~~~~~~~~~~--~~vGd~V~vk 85 (115)
T 2khi_A 29 PEGTK--LTGRVTNLTDYG--CFVEIEEG-----VEGLVHVSEMDWTNKNIHPSKV--VNVGDVVEVM 85 (115)
T ss_dssp CSSCE--EEEEEEEEETTE--EEEECSTT-----CEEEEETTSSSCSSTTCSSTTT--CCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEECCE--EEEEECCC-----CEEEEEHHHCCccccccCcccE--ECCCCEEEEE
Confidence 34663 789999999877 89999543 5677776543211 11 23 8899999876
No 146
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=33.52 E-value=9.8 Score=41.11 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=25.3
Q ss_pred CCccccccHHHHHHHHcCCCCccccccCC
Q 012529 425 PHAGFGLGFERLVQFATGVENIRDAIPFP 453 (461)
Q Consensus 425 P~gG~giGidRLvm~l~g~~~Irdv~~FP 453 (461)
++---|+|+|||+|.+-|.+|+=|+ .|+
T Consensus 239 ~~iDtG~GlER~~~~lqg~~s~yd~-~f~ 266 (739)
T 2ztg_A 239 YIVDTGYGLERFVWASKGTPTVYDA-IFP 266 (739)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HCH
T ss_pred CeEecCcCHHHHHHHHcCCCchHHh-hHH
Confidence 6888999999999999999999988 664
No 147
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=31.08 E-value=71 Score=25.45 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=44.3
Q ss_pred CEEEEEEEEee---eecC--CCeEEEE--EE-cCc----cCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC
Q 012529 30 LMIVVAGWVRT---LRAQ--SSVTFIE--VN-DGS----CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (461)
Q Consensus 30 ~~v~v~G~v~~---~R~~--~~~~Fi~--l~-D~s----~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~ 97 (461)
..|.+.|+|.+ +|.. |+.+... |- +.. ...-+.|++-.+.... ..+. |..||-|.|+|.+....-
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~-~~~y--l~KG~~V~VeGrL~~r~y 88 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQE-LQDR--CRLNDEVVLEGRLRINSL 88 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHH-HHHH--CCTTCEEEEEEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHH-HHHh--CCCCCEEEEEEEEEeeeE
Confidence 45888888875 4543 3123222 21 110 1123777776543221 1245 999999999999976431
Q ss_pred ----C--CccEEEEEeEEE
Q 012529 98 ----S--KQKVELKVNKIV 110 (461)
Q Consensus 98 ----~--~~~~el~~~~i~ 110 (461)
+ ....||.|++|.
T Consensus 89 ~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 89 LKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp -------CCEEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEEEEE
Confidence 1 235788887764
No 148
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=30.57 E-value=2e+02 Score=22.71 Aligned_cols=67 Identities=13% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCEEEEEEEEeeeec----C-CCeEEEEEEcCcc-CccEEEEEeCCCcch--hhhhhcCCCCCcEEEEEeeEeecC
Q 012529 29 GLMIVVAGWVRTLRA----Q-SSVTFIEVNDGSC-LSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQ 96 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~----~-~~~~Fi~l~D~s~-~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~v~G~~~~~~ 96 (461)
|..+++-|+|+.+.. . +=..|...-|+.+ .++=|.++.=-...| ..+| ..|+.|+.|.|.|+++..|
T Consensus 3 ~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk-~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 3 GSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLK-DQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp -CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC----------CCCTTCEEEEEEEEECCC
T ss_pred ccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHH-HHHhCCCEEEEEeEEEeee
Confidence 567899999999986 2 2334555555532 011122111000123 3344 3499999999999998765
No 149
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=30.53 E-value=22 Score=35.93 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeec-CCCC-----CCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITA-SDCE-----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGP 225 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~-~~~e-----g~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~ 225 (461)
++|-+.+-+||.++|-.-|.+--|.+ .++. ++-.+|+ +++.. +....+.|+-..-+
T Consensus 6 ~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FK-p~flG-----------------~~~p~~~r~t~sQk 67 (465)
T 1yfs_A 6 HEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFK-NVFLG-----------------LEKRPYKRATSCQK 67 (465)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTH-HHHHT-----------------SSCCSCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhh-HHhcC-----------------CCCCCCCceecccc
Confidence 35666778899999999998766666 2321 1222332 12110 00112578888889
Q ss_pred ccccC-------C-CCCCCCccccccceeeeccCCH--HHHHHHHHHHH
Q 012529 226 TFRAE-------N-SNTSRHLAEFWMIEPELAFADL--KDDMACATAYL 264 (461)
Q Consensus 226 ~FR~E-------~-~~t~rHl~EFtmlE~e~a~~d~--~dlm~~~e~li 264 (461)
|.|+- + ..|.||..=|-||== .+|.|| ++.+..+=+++
T Consensus 68 CiRag~~hNDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~AwE~L 115 (465)
T 1yfs_A 68 CLRVSGKHNDLEQVGYTSRHHTFFEMLGN-FSFGDYFKKEAIEYAWEFV 115 (465)
T ss_dssp EECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHH
T ss_pred ccccCCCcccHhhcCCCCCccchheeccc-cchhhhhHHHHHHHHHHHH
Confidence 99942 1 247899988888753 467785 55555544444
No 150
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=29.09 E-value=54 Score=26.64 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=32.9
Q ss_pred EEEEEeC-CCcchhhhhhcCCCCCcEEEEEeeEeec----C--CCC--ccEEEEEe----EEEEeccC
Q 012529 61 MQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPS----Q--GSK--QKVELKVN----KIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~-~~~~~~~~~~~~l~~g~~V~v~G~~~~~----~--~~~--~~~el~~~----~i~vl~~~ 115 (461)
+.|++-. +.... ..+. |..||.|.|+|.+... + .++ ...||.|+ +++.|+.-
T Consensus 56 ~~v~~wg~~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k 120 (124)
T 3ulp_A 56 HRIVVYDQNIVDL-IDKY--LRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDK 120 (124)
T ss_dssp EEEEECCHHHHHH-HHHH--CCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC--
T ss_pred EEEEEEEchHHHH-HHhh--cCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCc
Confidence 6677655 32211 1345 9999999999999743 2 232 35888997 88888753
No 151
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.40 E-value=1.1e+02 Score=23.83 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=35.1
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-c-h--hh-hhhcCCCCCcEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-G-Y--DQ-VKSGLITTGASIWIQ 89 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~-~--~~-~~~~~l~~g~~V~v~ 89 (461)
..|+. +.|.|.++...| +|++|.+... .+...+..+.. . + .. -+. ++.||.|.|.
T Consensus 11 ~vG~i--~~G~V~~v~~fG--~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~--~~~Gd~V~Vk 70 (103)
T 2eqs_A 11 TIGDI--YNGKVTSIMQFG--CFVQLEGLRK--RWEGLVHISELRREGRVANVADV--VSKGQRVKVK 70 (103)
T ss_dssp CTTCE--EEEEEEEECSSC--EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHH--CCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEeccE--EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccE--eCCCCEEEEE
Confidence 44554 679999998877 8999975210 15666765432 1 1 11 134 8899998876
No 152
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=27.76 E-value=15 Score=36.53 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.6
Q ss_pred CCccccccHHHHHHHHc
Q 012529 425 PHAGFGLGFERLVQFAT 441 (461)
Q Consensus 425 P~gG~giGidRLvm~l~ 441 (461)
|.-|||+|+|||+..+-
T Consensus 302 P~vg~~igveRl~~~le 318 (420)
T 1qe0_A 302 TGIGFALSIERLLLALE 318 (420)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred CEEEEEecHHHHHHHHH
Confidence 55699999999999873
No 153
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=27.71 E-value=1e+02 Score=26.80 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=32.8
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchh---hhhhcCCCCCcEEEEE
Q 012529 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD---QVKSGLITTGASIWIQ 89 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~---~~~~~~l~~g~~V~v~ 89 (461)
.|+. +.|.|.++...| +|++|.+..+ +...+..+..... ..+ ..++.||.|.|.
T Consensus 15 ~G~i--v~G~V~~i~~fG--aFV~L~e~~g---veGLvhiSels~~~v~~~~-~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDDI--VMVNVQQIAEMG--AYVKLLEYDN---IEGMILLSELSRRRIRSIQ-KLIRVGKNDVAV 71 (175)
T ss_dssp TTCE--EEEEEEEEETTE--EEEEETTTTT---CEEEEECC--------CCC-CCCCTTSEEEEE
T ss_pred CCCE--EEEEEEEEecce--EEEEEcCCCC---cEEEEEHHHcCCcccCCHH-HcCCCCCEEEEE
Confidence 4554 689999998877 8999943322 5666765542211 111 127788888776
No 154
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=26.88 E-value=99 Score=27.05 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=32.4
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc---hhhhhhcCCCCCcEEEEE
Q 012529 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~---~~~~~~~~l~~g~~V~v~ 89 (461)
.|+. +.|.|.++...| +|++|.+..+ +...+.-+... +...+ ..++.||.|.|.
T Consensus 15 ~G~i--v~G~V~~I~~fG--aFV~L~e~~g---~eGLvhiSels~~~v~~~~-~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VEDV--VMVNVRSIAEMG--AYVSLLEYNN---IEGMILLSELSRRRIRSIN-KLIRIGRNECVV 71 (182)
T ss_dssp TTCE--EEEEEEEECSSE--EEEEETTTTT---EEEEEEGGGC-------------CTTCEEEEE
T ss_pred CCCE--EEEEEEEEeccE--EEEEEccCCC---cEEEEEHHHCCCcccCCHH-HhcCCCCEEEEE
Confidence 4554 689999999887 8999954332 67777655421 11121 127788888776
No 155
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=25.51 E-value=23 Score=35.56 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeec-CCCC-----CCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEec
Q 012529 152 NALAYATHKFFQENGFIWISSPIITA-SDCE-----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGP 225 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~-~~~e-----g~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~ 225 (461)
++|-+.+-+||.++|...|.+-.|.+ .++. ++-.+|+ +++.. +....+.|+-..-+
T Consensus 5 ~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FK-p~flG-----------------~~~p~~~r~~~sQk 66 (441)
T 3hy0_A 5 AEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFK-DVFLG-----------------LDKRNYSRATTSQR 66 (441)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGH-HHHHT-----------------SSCCSCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhh-hhhcC-----------------CCCCCCCCcccccc
Confidence 45667778899999999987666655 2221 1122332 12110 00012578888899
Q ss_pred cccc----CC----CCCCCCccccccceeeeccCCH--HHHHHHHHHH
Q 012529 226 TFRA----EN----SNTSRHLAEFWMIEPELAFADL--KDDMACATAY 263 (461)
Q Consensus 226 ~FR~----E~----~~t~rHl~EFtmlE~e~a~~d~--~dlm~~~e~l 263 (461)
|.|+ .+ ..|.||..=|-||== .+|.|| ++.+..+=++
T Consensus 67 CiR~gGKHnDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~Awe~ 113 (441)
T 3hy0_A 67 CVRAGGKHNDLENVGYTARHHTFFEMLGN-FSFGDYFKLDAILFAWLL 113 (441)
T ss_dssp EECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHH
T ss_pred ceecCCCCCCHHhhCCCCccccceeeccc-cccchhhHHHHHHHHHHH
Confidence 9997 22 247899988888753 557775 3444433333
No 156
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=24.28 E-value=18 Score=39.14 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.3
Q ss_pred CCccccccHHHHHHHHcCCCCccccccCC
Q 012529 425 PHAGFGLGFERLVQFATGVENIRDAIPFP 453 (461)
Q Consensus 425 P~gG~giGidRLvm~l~g~~~Irdv~~FP 453 (461)
||---|+|+|||++.+-|.+|.=|+ +|+
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HHH
Confidence 5667899999999999999999888 664
No 157
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=23.33 E-value=1.4e+02 Score=27.44 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCCCcEEEEEeeEeecCCC----C----ccEEEEEeEEEEecc
Q 012529 80 ITTGASIWIQGNVVPSQGS----K----QKVELKVNKIVLVGK 114 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~~~----~----~~~el~~~~i~vl~~ 114 (461)
+.+||-|.|+|.+...+.. . -..-|.|..|+.+++
T Consensus 225 ~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 225 ARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp SCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred ccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 8999999999999765421 1 134456666666553
No 158
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=23.23 E-value=1.2e+02 Score=27.04 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=31.5
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC------CCccEEEEEeEEEE
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG------SKQKVELKVNKIVL 111 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~------~~~~~el~~~~i~v 111 (461)
+.|++-.+.... ..+. |+.||.|.|+|.|....- +...+||.|++|.+
T Consensus 55 i~VvawgklAE~-v~~~--L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 55 LTCSVWRQAAEN-VAES--LQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEETHHHHH-HHHH--CCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEhHHHHH-HHHh--cCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 667776543211 1345 999999999999976431 12358888888754
No 159
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=22.45 E-value=1.1e+02 Score=26.27 Aligned_cols=83 Identities=10% Similarity=0.224 Sum_probs=48.1
Q ss_pred CEEEEEEEEee---eecC--C-CeEEEEE-EcC------cc-----CccEEEEEeCC-CcchhhhhhcCCCCCcEEEEEe
Q 012529 30 LMIVVAGWVRT---LRAQ--S-SVTFIEV-NDG------SC-----LSNMQCVMTSD-AEGYDQVKSGLITTGASIWIQG 90 (461)
Q Consensus 30 ~~v~v~G~v~~---~R~~--~-~~~Fi~l-~D~------s~-----~~~iQvv~~~~-~~~~~~~~~~~l~~g~~V~v~G 90 (461)
.+|+|.|+|.+ +|.. | .++-+.| .+. +| ..-+.|++-.+ .... ..+. |..|+.|.|+|
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~-~~~~--l~KG~~V~VeG 100 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKI-ALQY--LHKGSKVYIEG 100 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHH-HHHH--CCTTCEEEEEE
T ss_pred eEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHH-HHHh--CCCCCEEEEEE
Confidence 56999999987 5653 3 2222222 111 01 12366777654 2211 1245 99999999999
Q ss_pred eEeecC----CC--CccEEEEE----eEEEEeccC
Q 012529 91 NVVPSQ----GS--KQKVELKV----NKIVLVGKS 115 (461)
Q Consensus 91 ~~~~~~----~~--~~~~el~~----~~i~vl~~~ 115 (461)
.+.... .+ ...+||.| .+|++|+..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 997642 12 23578877 578988764
No 160
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=64 Score=26.05 Aligned_cols=53 Identities=17% Similarity=0.341 Sum_probs=33.1
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc--c-hhhh-hhcCCCCCcEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G-YDQV-KSGLITTGASIWIQ 89 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~--~-~~~~-~~~~l~~g~~V~v~ 89 (461)
..|+. +.|.|.++...| +||+| ++.+ +...+..+.. . +... +. ++.||.|.|.
T Consensus 21 ~vG~i--v~G~V~~I~~fG--aFV~l-~g~~---~~Glvhisel~~~~~~~~~~~--~~~Gd~V~Vk 77 (119)
T 2cqo_A 21 ALYTI--FQGEVAMVTDYG--AFIKI-PGCR---KQGLVHRTHMSSCRVDKPSEI--VDVGDKVWVK 77 (119)
T ss_dssp CTTCE--EEEEEEEEETTE--EEEEC-TTCS---SCEEEEHHHHCSSCCSCHHHH--CCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEeCce--EEEEE-CCCc---EEEEEEHHHCCcccccChhhc--CCCCCEEEEE
Confidence 34554 679999998876 89999 4421 2445543321 1 1111 34 8999999876
No 161
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=22.05 E-value=1.1e+02 Score=28.36 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=34.1
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC---C--CccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG---S--KQKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~---~--~~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+.... ..+. |..|+.|.|+|.+....- + ...+||.|++|.+|+..
T Consensus 54 ~~v~~~g~~Ae~-~~~~--l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 54 HRVRLLGRQAEM-WGDL--LEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEETHHHHH-HTTT--CCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEchHHHH-HHHh--CCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 667666542211 1234 999999999999976431 1 23479999999998754
No 162
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=21.75 E-value=16 Score=37.21 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=15.4
Q ss_pred CCCccccccHHHHHHHHcC
Q 012529 424 VPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 424 pP~gG~giGidRLvm~l~g 442 (461)
|+.+|||+| |||+..|..
T Consensus 249 v~~~~~Gig-eRli~alie 266 (459)
T 1nj8_A 249 AYQTCYGIS-DRVIASIIA 266 (459)
T ss_dssp CEEEEEEEC-THHHHHHHH
T ss_pred eeEeeccHH-HHHHHHHHH
Confidence 567899999 999998854
No 163
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.79 E-value=63 Score=25.90 Aligned_cols=54 Identities=11% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-chh---hhhhcCCCCCcEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYD---QVKSGLITTGASIWIQ 89 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~---~~~~~~l~~g~~V~v~ 89 (461)
..|+. +.|.|.++...| +|++|..+ + +..+...+.. .|. ... ..++.||.|.|.
T Consensus 20 ~~G~i--~~G~V~~v~~fG--~fV~l~~~-~---~~~l~~~~~~~~~~~~~~~~-~~~~~Gd~V~vk 77 (119)
T 1wi5_A 20 KPGML--LTGTVSSLEDHG--YLVDIGVD-G---TRAFLPLLKAQEYIRQKNKG-AKLKVGQYLNCI 77 (119)
T ss_dssp CTTCE--EEEEEEEECSSE--EEEECCCS-S---CEEEEEHHHHHHHHHHHSSS-CCCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEeCce--EEEEECCC-C---eEEEEEEecccccccccCcc-CEeCCCCEEEEE
Confidence 34554 679999999887 89999622 1 3444444331 221 111 138999999886
No 164
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=20.68 E-value=1e+02 Score=29.34 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=34.4
Q ss_pred EEEEEeCCCcchhhhhhcC-CCCCcEEEEEeeEeecC----CCC--ccEEEEEeEEEEeccC
Q 012529 61 MQCVMTSDAEGYDQVKSGL-ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~-l~~g~~V~v~G~~~~~~----~~~--~~~el~~~~i~vl~~~ 115 (461)
+.|++-.+... .+.. . |..|+.|.|+|.+.... .++ ..+||.+++|.+|...
T Consensus 54 i~vv~~g~~Ae--~~~~-~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 54 HRVSILGKPAE--WQAE-RNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEESHHHH--HHHH-TCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEEEcHHHH--HHHh-hCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 67777654321 1322 3 79999999999997532 122 2478999999999764
Done!