RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012529
(461 letters)
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 934 bits (2415), Expect = 0.0
Identities = 403/486 (82%), Positives = 429/486 (88%), Gaps = 26/486 (5%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G VGEFRKKL+I DVKGG +EGL RVG + V GWVRTLRAQSSVTFIEVNDGSCLSNM
Sbjct: 80 GEAVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNM 139
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMT DAEGYDQV+SGLITTGAS+ +QG VV SQG KQKVELKV+KIV+VGKSDPSYPI
Sbjct: 140 QCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPI 199
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 200 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ---------------------- 219
GAGEQFCVTTLIP+S E S VD IPKTKDGLIDWSQ
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYAT 319
Query: 220 ----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 275
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+YIL+NC
Sbjct: 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENC 379
Query: 276 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 335
KEDM+FFNTWIEKGIIDRLS V E++FVQLSYTDAIELL+KAKKKFEF VKWG DLQSEH
Sbjct: 380 KEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439
Query: 336 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 395
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 440 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERL 499
Query: 396 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
EYLE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 500 EYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRV 559
Query: 456 PGSVEF 461
PGS EF
Sbjct: 560 PGSAEF 565
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 721 bits (1865), Expect = 0.0
Identities = 260/467 (55%), Positives = 326/467 (69%), Gaps = 33/467 (7%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++ I D+ G VG + V GWVRT R + F+++ DGSC +Q V +
Sbjct: 2 MRVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGE 56
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
E ++++K +TTG+S+ + G VV S + Q EL+ KI ++G+ YPIQKKR S E
Sbjct: 57 EYFEEIKK--LTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIE 114
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPRTN FGAV R+RN LA A H+FF ENGF+W+ +PIITASDCEGAGE F V
Sbjct: 115 FLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRV 174
Query: 190 TTLIPSS------REA---------AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNT 234
TTL +EA AE+ A+ +VYTFGPTFRAENSNT
Sbjct: 175 TTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMAL----------GKVYTFGPTFRAENSNT 224
Query: 235 SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 294
RHLAEFWMIEPE+AFADL+D+M A L+YVV+Y+L+NC +D++F N ++KG I+RL
Sbjct: 225 RRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERL 284
Query: 295 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDY 354
E F +++YT+AIE+L K+ KKFEF V+WG DL SEHERYL EE F PV V++Y
Sbjct: 285 ENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNY 343
Query: 355 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 414
PK+IKAFYMR N DG+TVAAMD+L P IGE+IGGSQREERL+ LE R+ EL LN++ YWW
Sbjct: 344 PKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWW 403
Query: 415 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
YLDLR YGSVPH+GFGLGFERLV + TG++NIRD IPFPRTPG EF
Sbjct: 404 YLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAEF 450
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase. In a multiple
sequence alignment of representative asparaginyl-tRNA
synthetases (asnS), archaeal/eukaryotic type
aspartyl-tRNA synthetases (aspS_arch), and bacterial
type aspartyl-tRNA synthetases (aspS_bact), there is a
striking similarity between asnS and aspS_arch in gap
pattern and in sequence, and a striking divergence of
aspS_bact. Consequently, a separate model was built for
each of the three groups. This model, asnS, represents
asparaginyl-tRNA synthetases from the three domains of
life. Some species lack this enzyme and charge tRNA(asn)
by misacylation with Asp, followed by transamidation of
Asp to Asn [Protein synthesis, tRNA aminoacylation].
Length = 453
Score = 578 bits (1492), Expect = 0.0
Identities = 236/450 (52%), Positives = 313/450 (69%), Gaps = 27/450 (6%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + V+GWVRT R+ + F+E+NDGS L +Q V+ + Y +TTG+S+
Sbjct: 15 VGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVS 74
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
+ G VV S G Q VEL+V KI +VG+++P YP+QKK S EFLR AHLR RTNT GA
Sbjct: 75 VTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGA 134
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--------------- 191
V RVRNAL+ A H++FQENGF W+S PI+T++DCEGAGE F V+T
Sbjct: 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTGNIDFSQDFFGKEAY 194
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251
L S + E+ A+ S+VYTFGPTFRAE SNTSRHL+EFWMIEPE+AFA
Sbjct: 195 LTVSGQLYLETYALAL----------SKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFA 244
Query: 252 DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311
+L D + A ++Y+++ +L+NC +++ F +K +I RL + F +++YTDAI
Sbjct: 245 NLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAI 304
Query: 312 ELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 371
E+L ++ K FE+ WG DLQ+EHER+L EE F PV V++YPK+IKAFYM+ NDDG+T
Sbjct: 305 EILKESDKNFEYEDFWGDDLQTEHERFLAEEYFKP-PVFVTNYPKDIKAFYMKLNDDGKT 363
Query: 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGL 431
VAAMD+L P IGE+IGGS+RE+ L+ LE R+ E+ L+ D+ WYLDLR YGSVPH+GFGL
Sbjct: 364 VAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGL 423
Query: 432 GFERLVQFATGVENIRDAIPFPRTPGSVEF 461
GFERL+ + TG+ENIRDAIPFPRTPG++ F
Sbjct: 424 GFERLLAYITGLENIRDAIPFPRTPGNINF 453
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation,
ribosomal structure and biogenesis].
Length = 435
Score = 511 bits (1318), Expect = e-180
Identities = 196/465 (42%), Positives = 268/465 (57%), Gaps = 41/465 (8%)
Query: 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS 67
K+ I D+K P+ G V V GWV R + F+ + DGS +Q V+
Sbjct: 1 MMKRTYIKDIK--PHVGGQEV----TVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPK 52
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS 127
+ + K+ +T +S+ + G V S + Q EL+V KI ++G++DP YPI KK S
Sbjct: 53 NKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112
Query: 128 R-EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
E L HL RT AV ++R+++ A +FF ENGF + +PIITAS EG GE
Sbjct: 113 ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGEL 172
Query: 187 FCVTTLIPSSREA--AESP-------VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRH 237
F V +EA +SP A+ +V+T GPTFRAE SNT RH
Sbjct: 173 FKVDYF---DKEAYLTQSPQLYKEALAAAL----------ERVFTIGPTFRAEKSNTRRH 219
Query: 238 LAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 297
L+EFWM++PE+AFADL D M A ++Y+ + +L+ C ++++F + L
Sbjct: 220 LSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSE-----LKRP 274
Query: 298 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 357
F +++Y +AIE+L +K FE V+WG DL +EHERYL EE F PV V++YPKE
Sbjct: 275 ESAPFPRITYKEAIEIL--EEKGFEK-VEWGDDLGTEHERYLGEEYFKP-PVFVTNYPKE 330
Query: 358 IKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYL 416
IK FYMR + D TVA+ D+L P GE+IGGSQRE + L R+ E L+ +SY WYL
Sbjct: 331 IKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYL 390
Query: 417 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
DLR YG PHAGFGLG ERLV + G++NIR+AIPFPR PG +
Sbjct: 391 DLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase.
Length = 572
Score = 471 bits (1212), Expect = e-162
Identities = 245/551 (44%), Positives = 328/551 (59%), Gaps = 102/551 (18%)
Query: 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 64
+F ++ I + P+ G G + + GWV+T R Q + F+EVNDGSC +N+Q +
Sbjct: 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVM 87
Query: 65 MTSDAEGYDQVKSGLITTGASIWIQGNV-VP--SQGSKQKVELKVNKIVLVGKSDPS-YP 120
+ D+ YD S L+ TG + + G + VP +G+KQK+EL V K++ VG DP+ YP
Sbjct: 88 V--DSSLYDL--STLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYP 143
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPII----- 175
+ K +++ EFLR HLR RTN+ AVAR+RNALA+ATH FFQE+ F++I +PII
Sbjct: 144 LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203
Query: 176 -----------------------------TASDCEGA-------GEQFCVTTLIPSSREA 199
T +D E A GE +S+E
Sbjct: 204 EGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEE 263
Query: 200 AESPV--------------------DAIPKTKDGLIDWSQ-------------------- 219
+ V +PK KDG ID+S+
Sbjct: 264 ITAAVAELKIAKESLAHIEERSKLKPGLPK-KDGKIDYSKDFFGRQAFLTVSGQLQVETY 322
Query: 220 ------VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 273
VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL+DDM CA AY++Y+ +++LD
Sbjct: 323 ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLD 382
Query: 274 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA---KKKFEFLVKWGCD 330
C +DM+ + G IDRL VA F +++YT+AIELL +A K+F+ V+WG D
Sbjct: 383 KCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGID 442
Query: 331 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 390
L SEHERYLTE F P+IV +YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ
Sbjct: 443 LASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQ 501
Query: 391 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 450
REER + ++ R++E+ L + Y WYLDLR YG+V H GFGLGFER++ FATG++NIRD I
Sbjct: 502 REERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVI 561
Query: 451 PFPRTPGSVEF 461
PFPR PG +
Sbjct: 562 PFPRYPGKADL 572
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional.
Length = 586
Score = 449 bits (1156), Expect = e-154
Identities = 228/511 (44%), Positives = 303/511 (59%), Gaps = 81/511 (15%)
Query: 28 VGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGA 84
+ +I V GW + +R Q F+ +NDGSC N+Q ++ E Y+++ K G+ G
Sbjct: 80 IDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGV---GC 136
Query: 85 SIWIQGNVV--PSQGS------KQKVELKVN-----KIVLVGKS-DPS-YPIQKKRVSRE 129
G ++ P Q K+ VEL + + G++ DP YP+ KK +E
Sbjct: 137 CFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKE 196
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPR+ +V R+RNALA ATH FFQ GF++I +P+IT SDCEG GE F V
Sbjct: 197 FLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTV 256
Query: 190 TTL---------IPSSR-----------------------EAAESPVDAIPKTKDG-LID 216
TTL IP ++ S + P D LID
Sbjct: 257 TTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316
Query: 217 WSQ--------------------------VYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250
+ + VYTFGPTFRAENS+TSRHLAEFWMIEPE+AF
Sbjct: 317 YKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAF 376
Query: 251 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 310
ADL D+M A +Y++Y + Y+L+N +D+ +F +E G+I RL + + DF +++YT+
Sbjct: 377 ADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNV 436
Query: 311 IELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 370
I+LL FE VKWG DLQSEHER++ E+ F PVIV +YPK++KAFYM+ N+D +
Sbjct: 437 IDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKK-PVIVYNYPKDLKAFYMKLNEDQK 495
Query: 371 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 430
TVAAMD+LVP+IGE+IGGSQRE+ LE L+ + E KLN +SYWWY LR +GS PHAGFG
Sbjct: 496 TVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFG 555
Query: 431 LGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
LGFERL+ TGV+NI+D IPFPR PG EF
Sbjct: 556 LGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II
core domain. Assignment to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure and the
presence of three characteristic sequence motifs in the
core domain. This family includes AsnRS as well as a
subgroup of AspRS. AsnRS and AspRS are homodimers,
which attach either asparagine or aspartate to the 3'OH
group of ribose of the appropriate tRNA. While archaea
lack asnRS, they possess a non-discriminating aspRS,
which can mischarge Asp-tRNA with Asn. Subsequently, a
tRNA-dependent aspartate amidotransferase converts the
bound aspartate to asparagine. The catalytic core domain
is primarily responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate.
Length = 322
Score = 381 bits (982), Expect = e-131
Identities = 140/347 (40%), Positives = 197/347 (56%), Gaps = 39/347 (11%)
Query: 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG 184
+ E L HL RT A+ R+R+ + A +F +ENGF + +P IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGG- 59
Query: 185 EQFCVTTLIPSS---REA--AESP-------VDAIPKTKDGLIDWSQVYTFGPTFRAENS 232
L S + A A+SP + A+ +VY GP FRAE S
Sbjct: 60 -----AELFKVSYFGKPAYLAQSPQLYKEMLIAAL----------ERVYEIGPVFRAEKS 104
Query: 233 NTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 291
NT RHL+EFWM+E E+AF D + M ++Y+ + +L+ C ++++ N +
Sbjct: 105 NTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN------QL 158
Query: 292 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 351
+R F +++Y +AIELL + + E VKWG DL +EHER L E G PV V
Sbjct: 159 NRELLKPLEPFPRITYDEAIELLREKGVEEE--VKWGEDLSTEHERLLGEIVKGD-PVFV 215
Query: 352 SDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD 410
+DYPKEIK FYM+ +DD TV + D+L+P +GE++GGSQR + LE R+ E L+ +
Sbjct: 216 TDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPE 275
Query: 411 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457
S+ WYLDLR YG PH GFGLG ERLV + G++NIR+AI FPR P
Sbjct: 276 SFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase.
Length = 633
Score = 296 bits (760), Expect = 5e-94
Identities = 149/366 (40%), Positives = 216/366 (59%), Gaps = 30/366 (8%)
Query: 111 LVGKSD----PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV---RNALAYATHKFFQ 163
L+GKSD + + +S E + KA ++ +TN + R R AL A +
Sbjct: 279 LLGKSDDKEEKKPVHETEGISLEAV--KAAIKEKTNLVEELKRSESNREALVAAEQDLRK 336
Query: 164 ENGFI-------WISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGL 214
N + + +D + F T L S R ES A+
Sbjct: 337 TNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACAL------- 389
Query: 215 IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274
VYTFGP FRA+ +++RHLAE WM+E E+AF++L+D M CA Y +++ +++L+N
Sbjct: 390 ---GNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLEN 446
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLVKWGCDLQS 333
C EDM F + I+K I RL + ++SYT+A++LL +A KKFE +WG L +
Sbjct: 447 CSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALTT 506
Query: 334 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREE 393
EH YL +E + PVI+ +YPKE+K FY+R NDDG+TVAA D++VP++G +I GSQ EE
Sbjct: 507 EHLSYLADEIYKK-PVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEE 565
Query: 394 RLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
R++ L R++EL L R+ Y WYLDLR +G+V H+GF LGFE +V FATG+ ++RDAIPFP
Sbjct: 566 RMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFP 625
Query: 454 RTPGSV 459
R+ G
Sbjct: 626 RSWGKA 631
Score = 145 bits (368), Expect = 8e-38
Identities = 78/205 (38%), Positives = 117/205 (57%), Gaps = 14/205 (6%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
S+V FR K++ GG + R I + ++ SV ++ ++DGSC++++Q
Sbjct: 96 SRVPIFRSIAKVL--SGGGSTYPVREKTEIAIQ---KSAPPPPSVAYLLISDGSCVASLQ 150
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQG---NVVPSQGSKQKVELKVNKIVLVGKSDPS- 118
V+ S Q L+ TG I +G +P+QG K +EL+V KI+ +G DP
Sbjct: 151 VVVDSALAPLTQ----LMATGTCILAEGVLKLPLPAQG-KHVIELEVEKILHIGTVDPEK 205
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
YP+ KKR+ + LR +H RPRT T +V RVR+AL +ATH FFQ++GF+++ PIIT +
Sbjct: 206 YPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265
Query: 179 DCEGAGEQFCVTTLIPSSREAAESP 203
D G GE F VTTL+ S + E
Sbjct: 266 DATGFGEMFRVTTLLGKSDDKEEKK 290
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N).
Length = 345
Score = 235 bits (601), Expect = 1e-73
Identities = 104/365 (28%), Positives = 155/365 (42%), Gaps = 54/365 (14%)
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
S E +L R A ++R+ + A +F E GF+ + +PI+T S EG
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 187 FCVTTLIPSSREAAE-----SP--------VDAIPKTKDGLIDWSQVYTFGPTFRAENSN 233
F L+PS A E SP V + V+ P FR E+
Sbjct: 61 F----LVPSKFYAKEAYLPQSPQLYKQLLMVAGFDR----------VFQIAPCFRDEDLR 106
Query: 234 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 293
T RH EF ++ E++F D +D M ++YV + +L +E IE R
Sbjct: 107 TDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKKVLGKREELELLG---IELPEFPR 163
Query: 294 LSTVAER------DFVQLSYTDAIELLIKAKKKFEFLVK----------WGCDLQSEHER 337
+ T AE D L + ++ + + K EF V G E
Sbjct: 164 I-TYAEAIERYGSDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVVDKALGALRSELGEE 222
Query: 338 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLE 396
L ++ PV V+D+P FYM +++D D+++ GE+ GGS R E
Sbjct: 223 NLGDK-DKDNPVFVTDFPLFEHPFYMPKDEDPPGLAERFDLVLN-GGEIGGGSIRIHDPE 280
Query: 397 YLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 452
R +EL L+ + + +YLD YG PH G GLG +RLV TG+E+IR+ I F
Sbjct: 281 EQRKRFEELGLDPEEAEEKFGFYLDALKYGMPPHGGIGLGLDRLVMLLTGLESIREVIAF 340
Query: 453 PRTPG 457
P+T
Sbjct: 341 PKTRK 345
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional.
Length = 437
Score = 234 bits (599), Expect = 3e-72
Identities = 135/451 (29%), Positives = 213/451 (47%), Gaps = 67/451 (14%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQ 89
+ +AGWV +R + F+ + D S + +Q V+ E ++ +K + + + +
Sbjct: 19 VTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIK--KLKRESVVSVT 74
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL------------ 137
G V + + VE+ +I ++ K++ P+ +S + A L
Sbjct: 75 GTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLD---ISGK---VLAELDTRLDNRFLDLR 128
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
RPR A+ ++R+ + A +F ENGF I +P I AS EG E F + +
Sbjct: 129 RPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPIDYF---EK 182
Query: 198 EA--AESP-------VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPEL 248
EA A+SP V A G +V+ GP FRAE NTSRHL E+ I+ E+
Sbjct: 183 EAYLAQSPQLYKQMMVGA------GF---ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEM 233
Query: 249 AFADL-KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSY 307
F D +D M L+Y+ + +NC+++++ + V E +++Y
Sbjct: 234 GFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP---------VPETPIPRITY 284
Query: 308 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA---FGGCPVIVSDYPKEIKAFY-M 363
+AIE+L + + WG DL +E ER L E +G ++DYP E + FY M
Sbjct: 285 DEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTM 340
Query: 364 RQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 423
DD + D+L + E+ G QR R + L + E LN +S+ +YL+ YG
Sbjct: 341 PDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGM 399
Query: 424 VPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
PH GFGLG ERL G+ENIR+A+ FPR
Sbjct: 400 PPHGGFGLGLERLTMKLLGLENIREAVLFPR 430
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA
synthetase. In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_arch, represents
aspartyl-tRNA synthetases from the eukaryotic cytosol
and from the Archaea. In some species, this enzyme
aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn)
is subsequently transamidated to Asn-tRNA(asn) [Protein
synthesis, tRNA aminoacylation].
Length = 428
Score = 176 bits (448), Expect = 2e-50
Identities = 126/432 (29%), Positives = 199/432 (46%), Gaps = 30/432 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGASIWIQG 90
+ GWV +R + F+ + D L +Q + + K + + + ++G
Sbjct: 15 VTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTFGAV 147
V + + E+ KI ++ ++ P+ L T+ R R T A+
Sbjct: 73 IVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAI 132
Query: 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA--AESPVD 205
R+R+ + + +F E GFI + +P + AS EG E F +T REA +SP
Sbjct: 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPITYF---EREAFLGQSP-- 187
Query: 206 AIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQ 265
+ K + + +VY GP FRAE NT RHL E I+ E+AF D D M +
Sbjct: 188 QLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVV 247
Query: 266 YVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 325
V + + C ++ +EK E FV+L+Y +AIE+ + +
Sbjct: 248 RVFEDVPERCAHQLETLEFKLEK---------PEGKFVRLTYDEAIEMANAKGVE----I 294
Query: 326 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGE 384
WG DL +E E+ L EE G ++D+P EI+ FY M D+ + D++ R E
Sbjct: 295 GWGEDLSTEAEKALGEEMDG--LYFITDWPTEIRPFYTMPDEDNPEISKSFDLMY-RDLE 351
Query: 385 LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 444
+ G+QR + L R+ LN + + YL+ YG PHAG+GLG ER V F G++
Sbjct: 352 ISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLK 411
Query: 445 NIRDAIPFPRTP 456
NIR+A+ FPR
Sbjct: 412 NIREAVLFPRDR 423
>gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed.
Length = 335
Score = 163 bits (414), Expect = 2e-46
Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 50/332 (15%)
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V +V++++ T +F GF+ + PII+ T P ++ PV
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISP-----------STD--PLMGLGSDLPVKQ 75
Query: 207 IP--------KTKDGLIDWSQ--------VYTFGPTFRAEN--SNTSRHLAEFWMIEPEL 248
I D +I Q ++ P FR E +T RHL EF ++ E+
Sbjct: 76 ISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEI 135
Query: 249 AFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYT 308
ADL + M ++Y+V+ +L+ +++++FF R +R F ++++
Sbjct: 136 EGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFG---------RDLPHLKRPFKRITHK 186
Query: 309 DAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 368
+A+E+L + + L + G SE E+ L+E P + D PK + FY R+ D
Sbjct: 187 EAVEILNEEGCRGIDLEELG----SEGEKSLSEHF--EEPFWIIDIPKGSREFYDRE-DP 239
Query: 369 GRT--VAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 425
R + D+L+P GE + G +RE E + R+ E ++ + Y WYL++ G +P
Sbjct: 240 ERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLP 299
Query: 426 HAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457
AGFG+G ERL ++ G+ +IR+ PFPR PG
Sbjct: 300 SAGFGIGVERLTRYICGLRHIREVQPFPRVPG 331
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 126 bits (319), Expect = 1e-31
Identities = 119/468 (25%), Positives = 208/468 (44%), Gaps = 57/468 (12%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI----- 80
+ G +++ G V T+R + F+ + +QCV+ V G++
Sbjct: 78 ELAGSEVLIRGRVHTIRGKGKSAFLVLR--QSGFTVQCVVFVSE---VTVSKGMVKYAKQ 132
Query: 81 -TTGASIWIQGNVV----PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR------- 128
+ + + ++G V P +G+ Q+VE++V KI V K+ + P + +R
Sbjct: 133 LSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEK 192
Query: 129 ------EFLRTKAHLRP-------RTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175
+ +R R RT A+ R+++ + +F GF+ I +P +
Sbjct: 193 ALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKL 252
Query: 176 TASDCEGAGEQFCVTTLIPSSREA--AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSN 233
A EG F L + A A+SP + K D+ +V+ GP FRAE+S
Sbjct: 253 IAGASEGGSAVF---RLDYKGQPACLAQSP--QLHKQMAICGDFRRVFEIGPVFRAEDSF 307
Query: 234 TSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 292
T RHL EF ++ E+ + + + + + + CK++++ +
Sbjct: 308 THRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLK 367
Query: 293 RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL---TEEAFGGCPV 349
L ++L++ + I++L +A + + L DL +E ER L +E +G
Sbjct: 368 YL-----PKTLRLTFAEGIQMLKEAGVEVDPL----GDLNTESERKLGQLVKEKYGTDFY 418
Query: 350 IVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN 408
I+ YP ++ FY M DD + + D+ + R E+I G+QR E LE R +E ++
Sbjct: 419 ILHRYPLAVRPFYTMPCPDDPKYSNSFDVFI-RGEEIISGAQRVHDPELLEKRAEECGID 477
Query: 409 RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456
+ Y+D YG+ PH GFG+G ER+V G+ NIR FPR P
Sbjct: 478 VKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 525
>gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon
recognition domain of the type found in Escherichia coli
asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis
thaliana and Saccharomyces cerevisiae mitochondrial (mt)
AsnRS. This domain is a beta-barrel domain (OB fold)
involved in binding the tRNA anticodon stem-loop. The
enzymes in this group are homodimeric class2b
aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the
specific attachment of amino acids (AAs) to their
cognate tRNAs during protein biosynthesis. This 2-step
reaction involves i) the activation of the AA by ATP in
the presence of magnesium ions, followed by ii) the
transfer of the activated AA to the terminal ribose of
tRNA. In the case of the class2b aaRSs, the activated
AA is attached to the 3'OH of the terminal ribose.
Eukaryotes contain 2 sets of aaRSs, both of which are
encoded by the nuclear genome. One set concerns with
cytoplasmic protein synthesis, whereas the other
exclusively with mitochondrial protein synthesis. S.
cerevisiae mtAsnRS can charge E.coli tRNA with
asparagines. Mutations in the gene for S. cerevisiae
mtAsnRS has been found to induce a "petite" phenotype
typical for a mutation in a nuclear gene that results in
a non-functioning mitochondrial protein synthesis
system.
Length = 82
Score = 111 bits (280), Expect = 4e-30
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVR++R ++FIE+NDGSCL N+Q V+ + + ++ ++TG+SI ++G
Sbjct: 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEIL--KLSTGSSIRVEGV 59
Query: 92 VVPSQGSKQKVELKVNKIVLVGK 114
+V S G+KQ EL+ KI ++G+
Sbjct: 60 LVKSPGAKQPFELQAEKIEVLGE 82
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II
core domain. This domain is the core catalytic domain of
class II aminoacyl-tRNA synthetases of the subgroup
containing aspartyl, lysyl, and asparaginyl tRNA
synthetases. It is primarily responsible for
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. Nearly all class II tRNA synthetases
are dimers and enzymes in this subgroup are homodimers.
These enzymes attach a specific amino acid to the 3' OH
group of ribose of the appropriate tRNA.
Length = 269
Score = 116 bits (292), Expect = 1e-29
Identities = 69/312 (22%), Positives = 116/312 (37%), Gaps = 51/312 (16%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA-AESPVDAI 207
+VR+ + A F + GF+ + +P++ F V SP
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFK 61
Query: 208 PKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267
+ G +D +V+ FR E +RH EF M++ E+AFAD +D + ++++
Sbjct: 62 KRLMVGGLD--RVFEINRNFRNE-DLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHL 118
Query: 268 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 327
R +L F + G F +L+Y +A+E
Sbjct: 119 AREVLGVTAVTYGFEL--EDFG----------LPFPRLTYREALERY------------- 153
Query: 328 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 387
G P+ ++DYP E+ + +D +A L E+
Sbjct: 154 ------------------GQPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGN 195
Query: 388 GSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443
GS R + E +N + + +YL YG PH G G+G +RL+ T
Sbjct: 196 GSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNS 255
Query: 444 ENIRDAIPFPRT 455
IR+ I FP+
Sbjct: 256 PTIREVIAFPKM 267
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional.
Length = 550
Score = 105 bits (262), Expect = 3e-24
Identities = 126/483 (26%), Positives = 202/483 (41%), Gaps = 64/483 (13%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTG 83
+ V +++ V T R + + F+ + DGS + D E D + G I T
Sbjct: 75 ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFI--GQIPTE 132
Query: 84 ASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE--------F 130
+ + ++ V + S +ELKV KI V +S + P + SR+
Sbjct: 133 SIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVN 192
Query: 131 LRTKAHLR---PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
T+ + R RT GA+ R+++ + +F ++ F I SP I + EG F
Sbjct: 193 FDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 188 CVTTLIPSSREA--AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE 245
+ +R A A+SP G D +V+ GP FR+ENSNT RHL EF ++
Sbjct: 253 KLEYF---NRFAYLAQSPQLYKQMVLQG--DVPRVFEVGPVFRSENSNTHRHLTEFVGLD 307
Query: 246 PELA---------------FADLKDDMACATAYLQYVVR------YILDNCKEDMDFFNT 284
E+ F + + +A T L+ V + + E M
Sbjct: 308 VEMRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGV 367
Query: 285 W-IEKGIID------RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER 337
I +G+ R+ + R ++++Y IELL E + D+ + +E+
Sbjct: 368 GVISEGVEPTDKYQARVHNMDSR-MLRINYMHCIELL---NTVLEEKMAPTDDINTTNEK 423
Query: 338 Y---LTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREE 393
L +E +G I +P + FY M DD R + DM + R E+ G+QR
Sbjct: 424 LLGKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFI-RGEEISSGAQRIH 482
Query: 394 RLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
+ L R L ++ Y+D G+ PH GFG+G ER+V G+ N+R A FP
Sbjct: 483 DPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFP 542
Query: 454 RTP 456
R P
Sbjct: 543 RDP 545
>gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon
recognition domain of class 2b aminoacyl-tRNA
synthetases (aaRSs). This domain is a beta-barrel domain
(OB fold) involved in binding the tRNA anticodon
stem-loop. Class 2b aaRSs include the homodimeric
aspartyl-, asparaginyl-, and lysyl-tRNA synthetases
(AspRS, AsnRS, and LysRS). aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation of the AA by ATP in the
presence of magnesium ions, followed by ii) the transfer
of the activated AA to the terminal ribose of tRNA. In
the case of the class2b aaRSs, the activated AA is
attached to the 3'OH of the terminal ribose. Eukaryotes
contain 2 sets of aaRSs, both of which are encoded by
the nuclear genome. One set concerns with cytoplasmic
protein synthesis, whereas the other exclusively with
mitochondrial protein synthesis. Included in this group
are archeal and archeal-like AspRSs which are
non-discriminating and can charge both tRNAAsp and
tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS
and LysU) encoded by two distinct genes, which are
differentially regulated. The cytoplasmic and the
mitochondrial isoforms of human LysRS are encoded by a
single gene. Yeast cytoplasmic and mitochondrial LysRSs
participate in mitochondrial import of cytoplasmic
tRNAlysCUU. In addition to their housekeeping role,
human LysRS may function as a signaling molecule that
activates immune cells. Tomato LysRS may participate in
a process possibly connected to conditions of
oxidative-stress conditions or heavy metal uptake. It is
known that human tRNAlys and LysRS are specifically
packaged into HIV-1 suggesting a role for LysRS in tRNA
packaging. AsnRS is immunodominant antigen of the
filarial nematode Brugia malayai and is of interest as a
target for anti-parasitic drug design. Human AsnRS has
been shown to be a pro-inflammatory chemokine which
interacts with CCR3 chemokine receptors on T cells,
immature dendritic cells and macrophages.
Length = 85
Score = 71.1 bits (175), Expect = 2e-15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ +AGWV + R + FI++ DGS +Q V+ + G ++ + T + + + G
Sbjct: 2 VTLAGWVHSRRDHGGLIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 92 VVPSQG---SKQKVELKVNKIVLVGK 114
VV + ++EL+ ++ ++ K
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLSK 85
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation,
ribosomal structure and biogenesis].
Length = 502
Score = 76.5 bits (189), Expect = 6e-15
Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 50/265 (18%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR-----YILDN 274
V+ G FR E +T H EF M+E A+AD +D M ++ + + +
Sbjct: 251 VFEIGRNFRNEGIDT-THNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTY 309
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD--AIELLIKAKKKFEFLVKWGC--- 329
+++DF + ++D L DF L + D A EL K + E WG
Sbjct: 310 GGQEIDFSKPFKRITMVDALKEYLGVDFDDL-FDDEEAKELAKKHGIEVEKYGTWGLGHL 368
Query: 330 -DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE---- 384
+ E L E P V+D+P EI +++ P + E
Sbjct: 369 LNELFEE---LVEAKLIQ-PTFVTDHPVEISPL-AKRHRSN----------PGLTERFEL 413
Query: 385 LIGGSQRE------------ERLEYLEGRLDELKLNRDSY----WWYLDLRHYGSVPHAG 428
IGG +E ++ E E +++E + D +++ YG P G
Sbjct: 414 FIGG--KEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGG 471
Query: 429 FGLGFERLVQFATGVENIRDAIPFP 453
G+G +RLV T +IRD I FP
Sbjct: 472 LGIGIDRLVMLLTNSPSIRDVILFP 496
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core
domain. Class II assignment is based upon its structure
and the presence of three characteristic sequence
motifs. AspRS is a homodimer, which attaches a specific
amino acid to the 3' OH group of ribose of the
appropriate tRNA. The catalytic core domain is primarily
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. AspRS in this family
differ from those found in the AsxRS family by a GAD
insert in the core domain.
Length = 280
Score = 69.1 bits (170), Expect = 4e-13
Identities = 82/328 (25%), Positives = 131/328 (39%), Gaps = 72/328 (21%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAA--ESP--- 203
R+R+ + A F E GF+ I +PI+T S EGA + F V + + + A +SP
Sbjct: 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLF 60
Query: 204 -----VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 258
V + + FR E+ R EF I+ E++F D +D M+
Sbjct: 61 KQLLMVSGFDR----------YFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMS 109
Query: 259 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 318
L+YV + + + F +++Y +A+E +
Sbjct: 110 LIEGLLKYVFK----------EVLGVELTT------------PFPRMTYAEAME-----R 142
Query: 319 KKFEFLVKWGCD-----LQSEHERYL-TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 372
F+FL W D E R + F + +++ D
Sbjct: 143 YGFKFL--WIVDFPLFEWDEEEGRLVSAHHPF------TAPKEEDLDLLE---KDPEDAR 191
Query: 373 A-AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW----WYLDLRHYGSVPHA 427
A A D+++ + EL GGS R + E + L L+ + + L+ YG+ PH
Sbjct: 192 AQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHG 250
Query: 428 GFGLGFERLVQFATGVENIRDAIPFPRT 455
G LG +RLV TG E+IRD I FP+T
Sbjct: 251 GIALGLDRLVMLLTGSESIRDVIAFPKT 278
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and
non-spirochete bacterial. This model represents the
lysyl-tRNA synthetases that are class II amino-acyl tRNA
synthetases. It includes all eukaryotic and most
bacterial examples of the enzyme, but not archaeal or
spirochete forms [Protein synthesis, tRNA
aminoacylation].
Length = 496
Score = 70.1 bits (172), Expect = 7e-13
Identities = 103/478 (21%), Positives = 172/478 (35%), Gaps = 79/478 (16%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGL 79
NE L+ + + +AG + R+ TFI + D S +Q + D E + + L
Sbjct: 46 NEELEDKNIEVSIAGRIMARRSMGKATFITLQDES--GQIQLYVNKDDLPEDFYEFDEYL 103
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS-----DPSYPI--QKKRVSREFLR 132
+ G I + G P + ++ + V ++ ++ K+ D + + Q+ R + +L
Sbjct: 104 LDLGDIIGVTGY--PFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLD 161
Query: 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ R TF VR+ + A +F + GFI + +P++ F
Sbjct: 162 LIVNPDSR-QTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPF----- 211
Query: 193 IPSS---------REAAESP-----VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHL 238
I R A E V K VY G FR E +T H
Sbjct: 212 ITHHNALDMDLYLRIAPELYLKRLIVGGFEK----------VYEIGRNFRNEGVDT-THN 260
Query: 239 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDR 293
EF MIE A+AD +D M +++ + +L K ++DF + +++
Sbjct: 261 PEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEA 320
Query: 294 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC------ 347
+ + E KK V L H + E F
Sbjct: 321 IKKYDMETGIDFDDLKDFETAKALAKKIGIEVA-EKSLTLGH---ILNELFEQFLEHTLI 376
Query: 348 -PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG--------SQREERLEYL 398
P ++ YP EI ++N L E+ QRE + +
Sbjct: 377 QPTFITHYPAEISPL-AKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQV 435
Query: 399 EGRL---DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
+ DE + + + L+ YG P G G+G +RLV T ++IRD I FP
Sbjct: 436 AEKEAGDDEAQFVDEDFVEALE---YGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core
domain. Class II LysRS is a dimer which attaches a
lysine to the 3' OH group of ribose of the appropriate
tRNA. Its assignment to class II aaRS is based upon its
structure and the presence of three characteristic
sequence motifs in the core domain. It is found in
eukaryotes as well as some prokaryotes and archaea.
However, LysRS belongs to class I aaRS's in some
prokaryotes and archaea. The catalytic core domain is
primarily responsible for the ATP-dependent formation of
the enzyme bound aminoacyl-adenylate.
Length = 329
Score = 59.1 bits (144), Expect = 1e-09
Identities = 67/269 (24%), Positives = 93/269 (34%), Gaps = 57/269 (21%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED- 278
VY G FR E + H EF MIE A+AD D M +V+ I K +
Sbjct: 79 VYEIGRNFRNEGIDL-THNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEY 137
Query: 279 ----MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
+DF + ++D L DF +L EL K L+K +
Sbjct: 138 GGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELA----KLLAKLIKEKIEKPRT 193
Query: 335 HERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 387
+ L ++ F P + D+P EI R + L R I
Sbjct: 194 LGKLL-DKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPG-------LTERFELFIC 245
Query: 388 GS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYGSV 424
G QRE E + + +DE D ++ YG
Sbjct: 246 GKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDE-----D----FVTALEYGMP 296
Query: 425 PHAGFGLGFERLVQFATGVENIRDAIPFP 453
P G G+G +RLV T +IRD I FP
Sbjct: 297 PTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type.
Asparate--tRNA ligases in this family may be
discriminating (6.1.1.12) or nondiscriminating
(6.1.1.23). In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_bact, represents
aspartyl-tRNA synthetases from the Bacteria and from
mitochondria. In some species, this enzyme aminoacylates
tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently
transamidated to Asn-tRNA(asn). This model generates
very low scores for the archaeal type of aspS and for
asnS; scores between the trusted and noise cutoffs
represent fragmentary sequences [Protein synthesis, tRNA
aminoacylation].
Length = 583
Score = 57.1 bits (138), Expect = 1e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 384 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 439
EL GGS R E + + L ++ R+ + + L+ YG+ PHAGF LG +RL+
Sbjct: 478 ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMML 537
Query: 440 ATGVENIRDAIPFPRT 455
TG +NIRD I FP+T
Sbjct: 538 LTGTDNIRDVIAFPKT 553
Score = 51.7 bits (124), Expect = 6e-07
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 22/254 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
+G + +AGWV R + FI++ D S + +Q V DA+ K + +
Sbjct: 14 LGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQ 69
Query: 88 IQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLRP 139
++G V +G+ ++E+ I L+ KS I +K + E +R K +L
Sbjct: 70 VKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS-RE 198
R ++R+ + A F + GF+ I +P++T S EGA + L+PS +
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-----YLVPSRVHK 184
Query: 199 AAESPVDAIPKTKDGLIDWSQV---YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 255
+ P+ L+ S V Y FR E+ R EF I+ E++F +D
Sbjct: 185 GEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQED 243
Query: 256 DMACATAYLQYVVR 269
M + +V
Sbjct: 244 VMELIEKLVSHVFL 257
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
Length = 491
Score = 57.0 bits (139), Expect = 1e-08
Identities = 68/275 (24%), Positives = 102/275 (37%), Gaps = 73/275 (26%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
VY G FR E +T RH EF M+E A+AD D M ++++ + +L K
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTY 301
Query: 277 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
++DF + ++D + DF ++ +A L + + E G
Sbjct: 302 QGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLG------ 355
Query: 335 HERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE- 384
L E F P ++DYP EI A +++ + P + E
Sbjct: 356 ---KLINELFEEFVEPKLIQPTFITDYPVEISPLA---KRHRE----------DPGLTER 399
Query: 385 ---LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDL 418
IGG QRE +E + +DE D +L
Sbjct: 400 FELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDE-----D----FLRA 450
Query: 419 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P G G+G +RLV T +IRD I FP
Sbjct: 451 LEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 585
Score = 54.5 bits (132), Expect = 6e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PH G G +RLV TG E+IRD I FP+T
Sbjct: 522 YGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKT 556
Score = 46.4 bits (111), Expect = 3e-05
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGAS 85
VG + ++GWV R + FI++ D + +Q V + E ++ +
Sbjct: 14 VGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFV 69
Query: 86 IWIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTK-AH 136
I + G V +G+ ++E+ +I ++ S + I+ + + E +R K +
Sbjct: 70 IQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRY 129
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
L R ++R+ + A F + GF+ I +PI+T S EGA
Sbjct: 130 LDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed.
Length = 505
Score = 53.5 bits (128), Expect = 1e-07
Identities = 101/470 (21%), Positives = 181/470 (38%), Gaps = 66/470 (14%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 58 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 115
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 116 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 168
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++ + F
Sbjct: 169 QRYLDLIANDKSR-QTF----VVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF 223
Query: 188 CVT-TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEP 246
+ +P + + G + +V+ FR E + RH EF M+E
Sbjct: 224 ITHHNALDLDMYLRIAPELYLKRLVVG--GFERVFEINRNFRNEGISV-RHNPEFTMMEL 280
Query: 247 ELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDF---FNTWIEKGIIDRLSTVA 298
+A+AD D + + + + + +L K DF F + I +
Sbjct: 281 YMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR--P 338
Query: 299 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE------EAFGGCPVIVS 352
E D L DA + L ++ WG R +TE EA P ++
Sbjct: 339 ETDMADLDNFDAAKALAESIG-ITVEKSWGLG------RIVTEIFDEVAEAHLIQPTFIT 391
Query: 353 DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG-----SQREERLEYLEGRLDELKL 407
+YP E+ R + + + + G IG + E++ E + +++
Sbjct: 392 EYPAEVSPLARRNDVNPEITDRFEFFIG--GREIGNGFSELNDAEDQAERFQEQVNAKAA 449
Query: 408 NRDSYWWY----LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
D +Y + YG P AG G+G +R++ T IRD I FP
Sbjct: 450 GDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 499
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated.
Length = 588
Score = 51.2 bits (124), Expect = 6e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PH G G +RLV G ++IRD I FP+T
Sbjct: 524 YGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKT 558
Score = 42.7 bits (102), Expect = 3e-04
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R + FI++ D + +Q V DAE ++ +S + + I
Sbjct: 16 VGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQ 71
Query: 88 IQGNVVP-SQGSKQK------VELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAH--- 136
+ G V +G+ +E+ +++ ++ KS +PI + E LR K +
Sbjct: 72 VTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLK-YRYL 130
Query: 137 -LR-PR-TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
LR P ++R+ + A F +NGF+ I +PI+T S EGA
Sbjct: 131 DLRRPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
>gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal,
anticodon recognition domain of the type found in human
and Saccharomyces cerevisiae cytoplasmic
asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai
AsnRs and, in various putative bacterial AsnRSs. This
domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop. The enzymes in
this group are homodimeric class2b aminoacyl-tRNA
synthetases (aaRSs). aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation of the AA by ATP in the
presence of magnesium ions, followed by ii) the transfer
of the activated AA to the terminal ribose of tRNA. In
the case of the class2b aaRSs, the activated AA is
attached to the 3'OH of the terminal ribose. Eukaryotes
contain 2 sets of aaRSs, both of which are encoded by
the nuclear genome. One set concerns with cytoplasmic
synthesis, whereas the other exclusively with
mitochondrial protein synthesis. AsnRS is
immunodominant antigen of the filarial nematode B.
malayai and of interest as a target for anti-parasitic
drug design. Human AsnRS has been shown to be a
pro-inflammatory chemokine which interacts with CCR3
chemokine receptors on T cells, immature dendritic cells
and macrophages.
Length = 84
Score = 45.7 bits (109), Expect = 1e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWV LR+Q + F+ + DG+ +QCV++ L T +S+ + G
Sbjct: 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSL-TQESSVEVTGE 58
Query: 92 VVPSQGSKQK---VELKVNKIVLVGK 114
V +KQ EL+V+ + ++G+
Sbjct: 59 VKEDPRAKQAPGGYELQVDYLEIIGE 84
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase.
Length = 652
Score = 47.1 bits (112), Expect = 1e-05
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 374 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGF 429
A DM V E+ GGS R R + + L+ + L+ + + L+ G+ PH G
Sbjct: 537 AYDM-VYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGI 595
Query: 430 GLGFERLVQFATGVENIRDAIPFPRT 455
G +RLV G ++IRD I FP+T
Sbjct: 596 AYGLDRLVMLLAGAKSIRDVIAFPKT 621
Score = 39.4 bits (92), Expect = 0.004
Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 35/251 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R +TF++V D + + + + E + + +
Sbjct: 71 VGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANR--LRNEYVVA 128
Query: 88 IQGNVVPSQGSKQ--------KVELKVNKI-VL--VGKSDPSYPI----QKKRVSREFLR 132
++G V S+ + VE+ + +L V KS P + + ++K +E +R
Sbjct: 129 VEG-TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP-FLVTTADEQKDSIKEEVR 186
Query: 133 TK-AHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVT 190
+ L R A R+R+ + ++ ++ +GF+ I +PI++ S EGA +
Sbjct: 187 LRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDY---- 242
Query: 191 TLIPSSREAAESPVDAIPKT----KDGLI--DWSQVYTFGPTFRAENSNTSRHLAEFWMI 244
L+PS + A+P++ K L+ + + Y FR E+ R EF +
Sbjct: 243 -LVPSRVQPGT--FYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQL 298
Query: 245 EPELAFADLKD 255
+ ELAF L+D
Sbjct: 299 DMELAFTPLED 309
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 45.8 bits (109), Expect = 4e-05
Identities = 76/267 (28%), Positives = 102/267 (38%), Gaps = 52/267 (19%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
VY G FR E +T RH EF E A+AD D M + +V+ + + K
Sbjct: 300 VYEIGRQFRNEGIST-RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKY 358
Query: 277 --EDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIKAKKKFEFLVKWGCDLQS 333
++DF + +I + DF L +A LI A +KF+ C
Sbjct: 359 HGIEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDV----KCPPPQ 414
Query: 334 EHERYLTE--EAFG--GC--PVIVSDYPKEIK--AFYMRQNDD----------GRTVA-A 374
R L E E F P V D+P E+ A R GR +A A
Sbjct: 415 TTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELANA 474
Query: 375 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR--DSYWWYLD------LRHYGSVPH 426
L + QRE R E +++K + D LD L YG P
Sbjct: 475 FSELTDPV------DQRE-RFE------EQVKQHNAGDDEAMALDEDFCTALE-YGLPPT 520
Query: 427 AGFGLGFERLVQFATGVENIRDAIPFP 453
G+GLG +RLV T +IRD I FP
Sbjct: 521 GGWGLGIDRLVMLLTDSASIRDVIAFP 547
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 41.3 bits (97), Expect = 4e-04
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 150 VRNALAYATHKFFQENGFIWISSPIIT-ASDCEGAGEQFCVTTLIPSSRE--AAESPVDA 206
+R+ + +F E GF + +PI+ E AG + + + E P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLE 60
Query: 207 IPKT---KDGLIDWSQ-VYTFGPTFRAENSNTS-RHLAEFWMIEPELAFAD 252
+ + GP FR E R + EF +E E+ D
Sbjct: 61 PGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGED 111
Score = 31.7 bits (72), Expect = 0.51
Identities = 26/107 (24%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 330 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 389
+L E L V V P E G + D R E+ G
Sbjct: 120 ELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAG---PGFEIEV-DHPEGRGLEIGSGG 175
Query: 390 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 436
R++ D Y+ L Y P GFGLG ERL
Sbjct: 176 YRQDEQARAA----------DLYFLDEALE-YRYPPTIGFGLGLERL 211
>gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon
recognition domain of the type found in Saccharomyces
cerevisiae and human cytoplasmic aspartyl-tRNA
synthetase (AspRS). This domain is a beta-barrel domain
(OB fold) involved in binding the tRNA anticodon
stem-loop. The enzymes in this group are homodimeric
class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs
catalyze the specific attachment of amino acids (AAs) to
their cognate tRNAs during protein biosynthesis. This
2-step reaction involves i) the activation of the AA by
ATP in the presence of magnesium ions, followed by ii)
the transfer of the activated AA to the terminal ribose
of tRNA. In the case of the class2b aaRSs, the
activated AA is attached to the 3'OH of the terminal
ribose. Eukaryotes contain 2 sets of aaRSs, both of
which are encoded by the nuclear genome. One set
concerns with cytoplasmic protein synthesis, whereas the
other exclusively with mitochondrial protein synthesis.
Length = 102
Score = 37.9 bits (89), Expect = 0.001
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 32 IVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEG-----YDQVKSGLITTGAS 85
+++ V T RAQ + + F+ + +Q V+ + AEG S ++ +
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQG--YTIQGVLAASAEGVSKQMVKWAGS--LSKESI 57
Query: 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQ 122
+ ++G V + ++Q VEL + KI +V ++ P Q
Sbjct: 58 VDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99
>gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon
recognition domain of the type found in Pyrococcus
horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS).
This domain is a beta-barrel domain (OB fold) involved
in binding the tRNA anticodon stem-loop. The archeal
enzymes in this group are homodimeric class2b
aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the
specific attachment of amino acids (AAs) to their
cognate tRNAs during protein biosynthesis. This 2-step
reaction involves i) the activation of the AA by ATP in
the presence of magnesium ions, followed by ii) the
transfer of the activated AA to the terminal ribose of
tRNA. In the case of the class2b aaRSs, the activated
AA is attached to the 3'OH of the terminal ribose.
Length = 103
Score = 36.0 bits (83), Expect = 0.006
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQ 89
+ +AGWV R FI + D + + +Q V + D E Y + K + +S+ ++
Sbjct: 2 VTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVE 57
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL 137
G V + E+ K+ ++ + +PI + S EFL HL
Sbjct: 58 GAVKADPRAPGGAEVHGEKLEIIQNVEF-FPITED-ASDEFLLDVRHL 103
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
synthetase/aspartyl/glutamyl-tRNA amidotransferase
subunit C; Provisional.
Length = 706
Score = 37.3 bits (86), Expect = 0.016
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 31/255 (12%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSG 78
+ LD G + +AGWV R + FI + D + +Q V + +A Y+ S
Sbjct: 11 HLSLDDTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS- 67
Query: 79 LITTGASIWIQGNV---VPSQGSKQ----KVELKVNKIVLVGKSDP-SYPIQKK------ 124
+ + +QG V + + +E+ V ++ ++ S+ + I K
Sbjct: 68 -LRAEFCVALQGEVQKRLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGA 126
Query: 125 ------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
V+ + +L R R+ + F GF+ I +PI+T S
Sbjct: 127 GSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKS 186
Query: 179 DCEGAGEQFCVTTLIPSSREA-AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRH 237
EGA + + + P A +SP + K + + + + FR E+ +R
Sbjct: 187 TPEGARDYLVPSRIHPKEFYALPQSP--QLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ 244
Query: 238 LAEFWMIEPELAFAD 252
EF ++ E +F D
Sbjct: 245 -PEFTQLDIEASFID 258
Score = 37.3 bits (86), Expect = 0.017
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 384 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 439
EL GGS R + L L+ D + ++L + + PH G LG +R+V
Sbjct: 499 ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSM 558
Query: 440 ATGVENIRDAIPFPR 454
+IR+ I FP+
Sbjct: 559 ILQTPSIREVIAFPK 573
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 37.3 bits (86), Expect = 0.018
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 422 GSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
G P AG+G+G +R + T NIRD I FP
Sbjct: 529 GLPPTAGWGMGIDRALMLLTNSSNIRDGIIFP 560
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 36.9 bits (86), Expect = 0.027
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
Y P G G+G +RLV TG +IR+ +PFP
Sbjct: 1057 YAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFP 1088
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 35.4 bits (81), Expect = 0.071
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P G GLG +R+ F T I+D I FP
Sbjct: 547 YGLPPTGGLGLGIDRITMFLTNKNCIKDVILFP 579
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA
synthetase (class II) [Translation, ribosomal structure
and biogenesis].
Length = 322
Score = 33.1 bits (76), Expect = 0.26
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 425 PHAGFGLGFERLVQFATGVENIRDAIPFPR 454
P +G LGF+RLV A G E+I D I FP
Sbjct: 290 PCSGVALGFDRLVMLALGAESIDDVIAFPV 319
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F).
Other tRNA synthetase sub-families are too dissimilar
to be included. This family includes only
phenylalanyl-tRNA synthetases. This is the core
catalytic domain.
Length = 245
Score = 32.5 bits (75), Expect = 0.35
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 418 LRHYG---SVPHAGFGLGFERLVQFATGVENIRD 448
L G P FGLG ERL G+++IRD
Sbjct: 200 LEAVGIDEEYPGFAFGLGVERLAMLKYGIDDIRD 233
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative
bacteria have a protein closely homologous to the
C-terminal region of lysyl-tRNA synthetase (LysS).
Multiple sequence alignment of these proteins with the
homologous regions of collected LysS proteins shows that
these proteins form a distinct set rather than just
similar truncations of LysS. The protein is termed GenX
after its designation in E. coli. Interestingly, genX
often is located near a homolog of
lysine-2,3-aminomutase. Its function is unknown [Unknown
function, General].
Length = 290
Score = 31.4 bits (72), Expect = 0.77
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 427 AGFGLGFERLVQFATGVENIRDAIP 451
+G LG +RL+ A G ++I D +
Sbjct: 266 SGVALGVDRLLMLALGADSIDDVLA 290
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 30.7 bits (70), Expect = 1.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 429 FGLGFERLVQFATGVENIRD 448
FGLG ERL G+ +IRD
Sbjct: 305 FGLGLERLAMLKYGIPDIRD 324
>gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal,
anticodon recognition domain of the type found in the
homodimeric non-discriminating (ND) Pyrococcus
kodakaraensis aspartyl-tRNA synthetase (AspRS). This
domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop. P. kodakaraensis
AspRS is a class 2b aaRS. aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation the AA by ATP in the presence
of magnesium ions, followed by ii) the transfer of the
activated AA to the terminal ribose of tRNA. In the
case of the class2b aaRSs, the activated AA is attached
to the 3'OH of the terminal ribose. P. kodakaraensis
ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of
the enzymes in this group may be discriminating, based
on the presence of homologs of asparaginyl-tRNA
synthetase (AsnRS) in their completed genomes.
Length = 108
Score = 28.4 bits (64), Expect = 2.4
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS-IWIQG 90
+ VAGWV +R + F+ + D + +Q + K+ + S I + G
Sbjct: 15 VTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRKLSRESVISVTG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
V + VE+ +I ++ ++ P+
Sbjct: 73 TVKAEPKAPNGVEIIPEEIEVLSEAKTPLPL 103
>gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS)
alpha chain catalytic core domain. PheRS belongs to
class II aminoacyl-tRNA synthetases (aaRS) based upon
its structure and the presence of three characteristic
sequence motifs. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. While class II aaRSs generally
aminoacylate the 3'-OH ribose of the appropriate tRNA,
PheRS is an exception in that it attaches the amino acid
at the 2'-OH group, like class I aaRSs. PheRS is an
alpha-2/ beta-2 tetramer.
Length = 218
Score = 29.4 bits (67), Expect = 3.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 429 FGLGFERLVQFATGVENIRD 448
FG+G ERL G+ +IR
Sbjct: 192 FGIGLERLAMLKYGIPDIRL 211
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 29.0 bits (66), Expect = 6.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 424 VPHAGFGLGFERLVQFATGVENIRD 448
VP +GLG ERL G+++IRD
Sbjct: 452 VPVLAWGLGIERLAMLRLGLDDIRD 476
>gnl|CDD|238567 cd01147, HemV-2, Metal binding protein HemV-2. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 262
Score = 28.5 bits (64), Expect = 7.4
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 346 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQR-EERLEYLEGRLDE 404
G PV+V D ++ + +G+++G +R EE + ++E L +
Sbjct: 98 GIPVVVLDGGD--------------SLEDTPEQIRLLGKVLGKEERAEELISFIESILAD 143
Query: 405 LK 406
++
Sbjct: 144 VE 145
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 28.7 bits (65), Expect = 8.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 286 IEKGIIDRLSTVAERDFVQLSY-TDAIELLIKAKKKFEFLVKWGCD 330
+E + D++ T+A++ Y D +EL KAKKK K G
Sbjct: 424 LEDPLEDKIETIAKK-----IYGADGVELSPKAKKKLARYEKQGFG 464
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most
phenylalanyl-tRNA synthetases are heterodimeric, with 2
alpha (pheS) and 2 beta (pheT) subunits. This model
describes the alpha subunit, which shows some similarity
to class II aminoacyl-tRNA ligases. Mitochondrial
phenylalanyl-tRNA synthetase is a single polypeptide
chain, active as a monomer, and similar to this chain
rather than to the beta chain, but excluded from this
model. An interesting feature of the alignment of all
sequences captured by this model is a deep split between
non-spirochete bacterial examples and all other
examples; supporting this split is a relative deletion
of about 50 residues in the former set between two
motifs well conserved throughout the alignment [Protein
synthesis, tRNA aminoacylation].
Length = 293
Score = 28.0 bits (63), Expect = 9.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 425 PHAGFGLGFERLVQFATGVENIRD 448
P +G+G ERL G+ +IRD
Sbjct: 257 PGFAWGIGIERLAMLKYGITDIRD 280
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,934,793
Number of extensions: 2348662
Number of successful extensions: 2110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2039
Number of HSP's successfully gapped: 81
Length of query: 461
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 361
Effective length of database: 6,502,202
Effective search space: 2347294922
Effective search space used: 2347294922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)