RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012529
(461 letters)
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 602 bits (1555), Expect = 0.0
Identities = 148/463 (31%), Positives = 231/463 (49%), Gaps = 44/463 (9%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCV------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLA 239
F + L S++ E+ + + +V++ P+FRAE S T RHL
Sbjct: 173 LFKLKYFDKYAYLSQSAQLYLEAAIFGL----------EKVWSLTPSFRAEKSRTRRHLT 222
Query: 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299
EFW +E E A+ DL D M + Y+V+ L+ K++++ F + E
Sbjct: 223 EFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTT------LKNTE 276
Query: 300 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
F ++SY +AI++L E WG DL ++ ER LTEE F P V YPK IK
Sbjct: 277 PPFPRISYDEAIDILQSKGVNVE----WGDDLGADEERVLTEE-FDR-PFFVYGYPKHIK 330
Query: 360 AFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 417
AFYM+++ +D R V A DML P GE+IGGSQRE+ + L R+ E ++ Y WYLD
Sbjct: 331 AFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLD 390
Query: 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
LR YGSVPH+GFGLG ERLV + +++IR A FPRTP +
Sbjct: 391 LRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 597 bits (1541), Expect = 0.0
Identities = 121/470 (25%), Positives = 203/470 (43%), Gaps = 49/470 (10%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCV------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENS 232
CEG F + L SS+ ES + ++ + + ++RAE S
Sbjct: 187 QCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASL----------GKSFCMLSSYRAEQS 236
Query: 233 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 292
T RHLAE+ +E EL F +D + + V+ ++ + + N ++
Sbjct: 237 RTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK----- 291
Query: 293 RLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 351
+ R F +++Y DAI+ + ++G D+ + ER +T+E GCP+ +
Sbjct: 292 ----LPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI--GCPIFM 345
Query: 352 SDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD 410
+P ++KAFYM + ++D+L+P +GE++GGS R + L G LN D
Sbjct: 346 IHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPD 405
Query: 411 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
Y+WY R YGS PH G+GLG ERLV + G ++IR +PR E
Sbjct: 406 PYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 594 bits (1535), Expect = 0.0
Identities = 113/450 (25%), Positives = 203/450 (45%), Gaps = 38/450 (8%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------T 190
L R A+ R+R A A + F G++ ++ P + + EG F + +
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQS 180
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250
L SS+ E+ + + V+ ++RAE S T RHLAE+ +E E F
Sbjct: 181 FLTQSSQLYLETCIPTLGD----------VFCIAQSYRAEKSRTRRHLAEYAHVEAECPF 230
Query: 251 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 310
L D M + V +L + + I ER F+++ Y DA
Sbjct: 231 ITLDDLMEKIEELVCDTVDRLLADE--EAKKLLEHINPKF-----QPPERPFLRMEYKDA 283
Query: 311 IELLIKA--KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-D 367
I+ L + + +F +G D+ ER++T+ P++++ +P EIKAFYM+++
Sbjct: 284 IKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILLNRFPSEIKAFYMQRDAQ 341
Query: 368 DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHA 427
D ++D+L+P +GE++GGS R + + L ++++ Y+WYLD R YG+ PH
Sbjct: 342 DNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHG 401
Query: 428 GFGLGFERLVQFATGVENIRDAIPFPRTPG 457
G+GLG ER + + T +IRD +PR G
Sbjct: 402 GYGLGLERFICWLTNTNHIRDVCLYPRFVG 431
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 508 bits (1310), Expect = e-179
Identities = 121/450 (26%), Positives = 205/450 (45%), Gaps = 40/450 (8%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------TTLIPS 195
A+ ++R+++ A FF ENGFI I +P I A+ EG E F + L S
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQS 190
Query: 196 SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLK 254
+ + + + +VY P FRAE NT+RHL E W I+ E+AF D +
Sbjct: 191 PQLYKQIMMAS---------GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEE 241
Query: 255 DDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 314
+ M+ + + + Y+ ++ +++D N +E+ + F ++SY A+E+L
Sbjct: 242 EVMSFLERLVAHAINYVREHNAKELDILNFELEEP---------KLPFPRVSYDKALEIL 292
Query: 315 IKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGR 370
K+ WG D+ +E ER L + E + YP E K FY M+ ++
Sbjct: 293 GDLGKEIP----WGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPE 348
Query: 371 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 430
A D+ R E+ G QRE R + L ++ E LN +S+ +YL YG PH GFG
Sbjct: 349 ICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFG 407
Query: 431 LGFERLVQFATGVENIRDAIPFPRTPGSVE 460
LG ERL++ + NIR+ I FPR +
Sbjct: 408 LGAERLIKQMLDLPNIREVILFPRDRRRLT 437
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 506 bits (1306), Expect = e-179
Identities = 118/461 (25%), Positives = 203/461 (44%), Gaps = 43/461 (9%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCV------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLA 239
F V L S + E + + V+ P +RAE S+T HLA
Sbjct: 172 LFPVIYFGKEAFLAQSPQLYKELMAGVVER----------VFEVAPAWRAEESDTPFHLA 221
Query: 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299
EF ++ E+AFAD D M L +V+ I + KE++ N + +
Sbjct: 222 EFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE---------VK 272
Query: 300 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
+L YT+AIE+L + +G D+ + R L EE + D+P + +
Sbjct: 273 IPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPELRILNEE-LKEDLYFIVDWPSDAR 327
Query: 360 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLR 419
FY + + ++ L+ + E++ GS R + E LE L + L +S+ ++L
Sbjct: 328 PFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWF 387
Query: 420 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
YG PHAGFG+G RL+ TG++++++ +PFPR +
Sbjct: 388 DYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT 428
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 463 bits (1195), Expect = e-162
Identities = 106/464 (22%), Positives = 194/464 (41%), Gaps = 58/464 (12%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCV------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAE 240
F V L S + + V + VY P +R E +TSRHL E
Sbjct: 164 FGVDYFEKRAYLAQSPQLYKQIMVGVFER----------VYEVAPVWRMEEHHTSRHLNE 213
Query: 241 FWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299
+ ++ E+ F AD +D M A L ++ L+ +++
Sbjct: 214 YLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SFP 264
Query: 300 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPK 356
+D +L++ +A +L K++ G DL E ER L E E +G + V+ YP+
Sbjct: 265 QDIPRLTHAEAKRIL---KEELG--YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPR 319
Query: 357 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYL 416
++ FY +DG T + D+L + E+ G QR R E L L ++ +++ YL
Sbjct: 320 SVRPFYTYPEEDGTT-RSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYL 377
Query: 417 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
++ YG PH GF +G ERL Q G+ N+R A FPR +
Sbjct: 378 EVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLT 421
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 424 bits (1092), Expect = e-148
Identities = 70/334 (20%), Positives = 126/334 (37%), Gaps = 55/334 (16%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA----SDCEGAGEQFCVT 190
+ + ++ + FF + GF W+ II+ + AGE
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 191 TLIPSSREA--AESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN--SNTSRHLAEFWMIEP 246
+ + S + K + +++ P R E+ + RH EF ++
Sbjct: 62 EVEIYGVKMRLTHSM--ILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDF 119
Query: 247 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 306
E+ A ++D M + + R + + F
Sbjct: 120 EVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK-----------------RFEVFE 162
Query: 307 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 366
Y++ +E ++G D ++ E P + + P+E FY R+
Sbjct: 163 YSEVLE-------------EFGSDEKASQEM--------EEPFWIINIPRE---FYDREV 198
Query: 367 DDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV- 424
D D+++P GE+ G +RE E + ++ + LN DS+ YL++ G +
Sbjct: 199 DG--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLK 256
Query: 425 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 458
P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 257 PSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 427 bits (1101), Expect = e-147
Identities = 108/500 (21%), Positives = 201/500 (40%), Gaps = 82/500 (16%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVT-----------------TLIPSSREAAESPVDA 206
F + +P + + EG F VT LI + E
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFE-------- 245
Query: 207 IPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQ 265
+VY GP FRAENSNT RH+ EF ++ E+AF + + + +
Sbjct: 246 ------------RVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFV 293
Query: 266 YVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 325
++ + +++ ++ + V+L+Y + IE+L A K+
Sbjct: 294 FIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIG--- 347
Query: 326 KWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 382
DL +E+E++L + + + I+ +P EI+ FY + + R
Sbjct: 348 -DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRG 406
Query: 383 GELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFA 440
E++ G+QR L+ R+ L+ + Y D YG PHAG G+G ER+V F
Sbjct: 407 EEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFY 466
Query: 441 TGVENIRDAIPFPRTPGSVE 460
++NIR A FPR P +
Sbjct: 467 LDLKNIRRASLFPRDPKRLR 486
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 372 bits (958), Expect = e-125
Identities = 88/382 (23%), Positives = 150/382 (39%), Gaps = 31/382 (8%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------TTLIPSSREAAESP 203
+++A +F F+ I +P + EG F V L S + +
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMA 305
Query: 204 VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATA 262
+ D+ +V+ GP FRAENSNT RHL EF ++ E+ + + +
Sbjct: 306 IMG---------DFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEK 356
Query: 263 YLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 322
++ I +++ + R F++L+Y +AIE+L + +
Sbjct: 357 LFTFIFDEIPKRFPDELKVIRKQYPF------EDLIYRPFLRLTYKEAIEMLRASGETIG 410
Query: 323 FLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDML 378
D + E L E + I+ +P I+ FY M DD + D+
Sbjct: 411 ----DYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVF 466
Query: 379 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQ 438
V E+ G+QR E+L R E ++ + Y++ +GS PHAG G+G ER+
Sbjct: 467 VRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITM 525
Query: 439 FATGVENIRDAIPFPRTPGSVE 460
G+ NIR FPR P +
Sbjct: 526 LYLGIPNIRKVTLFPRDPIRLN 547
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 52.5 bits (127), Expect = 2e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 517 YGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
Score = 44.4 bits (106), Expect = 6e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 52.5 bits (127), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 523 YGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
Score = 40.2 bits (95), Expect = 0.001
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEGYDQVKSGLITTGASI 86
VG + + GWV R S+ FI++ D + +Q D A+ + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCI 69
Query: 87 WIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLR 138
+ G V + + ++E+ + + ++ ++D P+ V+ E R K +L
Sbjct: 70 QVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVL-PLDSNHVNTEEARLKYRYLD 128
Query: 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R + R + +F ++GF+ I +P++T + EGA
Sbjct: 129 LRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 51.8 bits (125), Expect = 2e-07
Identities = 45/260 (17%), Positives = 77/260 (29%), Gaps = 56/260 (21%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-ED 278
V+ +FR E H EF M+E D+ M L ++ +LD E
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMN-EVDDL---LQQVLDCPAAES 166
Query: 279 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEH-E 336
+ + ++ ID + T E+ K + D L
Sbjct: 167 LSYQQAFLRYLEID---------PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFT 217
Query: 337 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGGS--- 389
+ P V +P + +D R+ E G
Sbjct: 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTED-----------HRVAERFEVYYKGIELA 266
Query: 390 -----------QREERLE-----YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGF 433
Q++ R E L + ++++ ++ G +G LG
Sbjct: 267 NGFHELTDAREQQQ-RFEQDNRKRAARGLPQHPIDQN----LIEALKVGMPDCSGVALGV 321
Query: 434 ERLVQFATGVENIRDAIPFP 453
+RLV A G E + + I F
Sbjct: 322 DRLVMLALGAETLAEVIAFS 341
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 51.0 bits (123), Expect = 5e-07
Identities = 68/276 (24%), Positives = 102/276 (36%), Gaps = 74/276 (26%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
VY G FR E +T RH EF M+E A+AD +D M + ++ +L K
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 277 --EDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 333
+D W ++D + DF Q+S +A EL + + + +G
Sbjct: 304 GEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG----- 358
Query: 334 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 384
++ E F P + +P EI A ++N D PR +
Sbjct: 359 ----HIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA---KKNPDD----------PRFTD 401
Query: 385 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 417
I G QR+ E L+ R +DE D +L+
Sbjct: 402 RFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE-----D----FLE 452
Query: 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P G G+G +RLV T +IRD + FP
Sbjct: 453 ALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
Score = 30.9 bits (71), Expect = 1.0
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
F + K ++ E L+ + + VAG + T R F + D + +Q
Sbjct: 30 RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVT--GQIQ 87
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+ D + Y+ K + G + ++G + ++ ++ +KV+ + K+
Sbjct: 88 IYVRQDDVGEQQYELFK--ISDLGDIVGVRGTMFKTK--VGELSIKVSSYEFLTKA 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 7e-07
Identities = 58/376 (15%), Positives = 101/376 (26%), Gaps = 132/376 (35%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSRE 198
G+ V L+Y + W++ T++
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLN-----------LKNCNSPETVL----- 199
Query: 199 AAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 258
+ +Y P + + + ++S +L ++ ++
Sbjct: 200 ---------------EMLQKLLYQIDPNWTSRSDHSSN---------IKLRIHSIQAELR 235
Query: 259 CATAYLQYVVRY-----ILDNC--KEDMDFFN-------TWIEKGIIDRLSTVAERDFVQ 304
L Y +L N + + FN T K + D LS
Sbjct: 236 ----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT---H 288
Query: 305 LSYTDAIELLIKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVS-------DYPK 356
+S L + K L+K+ C Q L E P +S D
Sbjct: 289 ISLDHHSMTLTPDEVK-SLLLKYLDCRPQD-----LPREVLTTNPRRLSIIAESIRDGLA 342
Query: 357 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE-----GRLDELKLNRDS 411
+ N D ++ +I S L LE D L + S
Sbjct: 343 TWD-NWKHVNCD------------KLTTIIESS-----LNVLEPAEYRKMFDRLSVFPPS 384
Query: 412 ----------YWWYLD 417
W+ +
Sbjct: 385 AHIPTILLSLIWFDVI 400
Score = 43.7 bits (102), Expect = 1e-04
Identities = 66/479 (13%), Positives = 135/479 (28%), Gaps = 134/479 (27%)
Query: 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDG------SCLSNMQCVMTSDAEGYDQVKSGLI 80
R+ + + + LR +V DG + ++ C + I
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLI----DGVLGSGKTWVALDVC----LSYKVQCKMDFKI 184
Query: 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIV-LVGKSDPSYPIQKKRVSREFLRTKAHLRP 139
W+ + + E + + L+ + DP++ + S LR + ++
Sbjct: 185 -----FWL------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQA 232
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASD--CEGAGEQFCVTTLIPSSR 197
N L + + ++ A + C + +TT +
Sbjct: 233 ELRRLLKSKPYENCLLVLLN--------VQ-NAKAWNAFNLSC-----KILLTT---RFK 275
Query: 198 EAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE----PELA---- 249
+ + + A T L S T L ++ P
Sbjct: 276 QVTDF-LSAATTTHISLDHHSMTLT--------PDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 250 ------FADLKDDMACATAYLQYV----VRYILDNCKEDMD-------F-----F--NTW 285
A+ D ++V + I+++ ++ F F +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 286 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE-HERYLTEEAF 344
I ++ + + + +D + ++ K K + K + YL +
Sbjct: 387 IPTILLSLI-------WFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELK-- 436
Query: 345 GGCPV---------IVSDYPKEIKAFYMRQNDDGRTVAAMDM-LVPRIGELIGGSQREER 394
+ IV Y K F + D +D IG + + ER
Sbjct: 437 --VKLENEYALHRSIVDHY-NIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 395 LE-----YLEGRLDELKLNRDSYWWY---------LDLRHYGS--VPHAGFGLGFERLV 437
+ +L+ R E K+ DS W L+ Y + +ERLV
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLV 545
Score = 31.4 bits (70), Expect = 0.79
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 38/122 (31%)
Query: 301 DF----VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 356
DF Q Y D + + A F K D+Q + L++E
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVD-NFDCK---DVQDMPKSILSKE-------------- 49
Query: 357 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE-YLEGRLDELKLNRDSYWWY 415
EI M ++ T+ L+ S++EE ++ ++E L R +Y +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLL---------SKQEEMVQKFVEEVL------RINYKFL 94
Query: 416 LD 417
+
Sbjct: 95 MS 96
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 49.5 bits (119), Expect = 2e-06
Identities = 54/276 (19%), Positives = 81/276 (29%), Gaps = 69/276 (25%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
V+ FR E + RH EF M+E A+ D + M ++ L
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 277 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK-FEFLVKWGCDLQS 333
++D + I + A +D L + K+ + +
Sbjct: 334 QGRELDLAQPFHRLTITQAIQKYAPSYTDGQL-SDDAFLRSELKRLGVDVTQPAFLNAGI 392
Query: 334 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 384
L F P + DYP E+ A R++D I E
Sbjct: 393 GA---LQLALFEETAEAQLWEPTFIIDYPIEVSPLA---RESDTV----------AGITE 436
Query: 385 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 417
I G Q + +E + D D Y+
Sbjct: 437 RFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA-----D----YIR 487
Query: 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P G G+G +RLV T IRD + FP
Sbjct: 488 ALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
Score = 30.2 bits (69), Expect = 1.5
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+F+ D++ E L+ L + +AG + R +F V DGS +Q
Sbjct: 60 DFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGS--GQIQ 117
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+T E YD K G + +G + + K ++ +K ++ L+ K+
Sbjct: 118 FFVTPADVGAETYDAFKK--WDLGDIVAARGVLFRTN--KGELSVKCTQLRLLAKA 169
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 48.3 bits (116), Expect = 4e-06
Identities = 60/271 (22%), Positives = 93/271 (34%), Gaps = 63/271 (23%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
V+ FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 277 --EDMDFFNTWIEKGIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 333
DF + + + + + E D L DA + L + WG
Sbjct: 313 GEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGL---- 367
Query: 334 EHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGEL- 385
+ E F P +++YP E+ R + + + R E
Sbjct: 368 ---GRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPE-------ITDRF-EFF 416
Query: 386 IGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYG 422
IGG Q E E + + DE D Y+ YG
Sbjct: 417 IGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE-----D----YVTALEYG 467
Query: 423 SVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
P AG G+G +R++ T IRD I FP
Sbjct: 468 LPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
Score = 27.9 bits (63), Expect = 8.6
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+FR+ + N+ L+ + + + VAG + T R +F+ + D +Q
Sbjct: 38 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVG--GRIQ 95
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+ D+ Y+ G I +G + +Q ++ + ++ L+ K+
Sbjct: 96 LYVARDSLPEGVYNDQFKKW-DLGDIIGARGTLFKTQ--TGELSIHCTELRLLTKA 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-04
Identities = 52/316 (16%), Positives = 90/316 (28%), Gaps = 124/316 (39%)
Query: 142 NTFGAVARVRNALAYATHKFFQENGF----IWISSPIITASDCEGAGEQFCVTTLIPSSR 197
T A V N A + F GF I I++P+ G + R
Sbjct: 1637 KTSKAAQDVWNR---ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK--------RIR 1685
Query: 198 E-----AAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252
E E+ VD KT+ F+ N +++ F
Sbjct: 1686 ENYSAMIFETIVDGKLKTE-------------KIFKEINEHST-----------SYTFRS 1721
Query: 253 LKDDMACATAYLQ---YVVRYILDNCKEDMDFFNTWIEKGIIDR--------------LS 295
K ++ AT + Q ++ F KG+I L+
Sbjct: 1722 EKGLLS-ATQFTQPALTLMEKAA---------FEDLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 296 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER-YLTEEAFGGCPVIVSDY 354
++A+ V +S +E++ R + A + S+Y
Sbjct: 1772 SLAD---V-MSIESLVEVV--------------------FYRGMTMQVAVPRDELGRSNY 1807
Query: 355 PKEIKAFYMRQNDDGRTVAAMDM-----LVPRIGELIG-----------GSQ-----REE 393
M + GR A+ +V R+G+ G Q
Sbjct: 1808 G-------MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 394 RLEYLEGRLDELKLNR 409
L+ + L+ +KL +
Sbjct: 1861 ALDTVTNVLNFIKLQK 1876
Score = 40.8 bits (95), Expect = 9e-04
Identities = 44/220 (20%), Positives = 70/220 (31%), Gaps = 76/220 (34%)
Query: 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSG----LITTGAS 85
M+ ++ + + Q V + N S L + V S G V SG L G +
Sbjct: 338 MLSISN-LTQEQVQDYVN--KTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSLY--GLN 390
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKA--H---LRPR 140
+ ++ PS G Q ++I P + +K + S FL + H L P
Sbjct: 391 LTLRKAKAPS-GLDQ------SRI-------P-FSERKLKFSNRFLPVASPFHSHLLVP- 434
Query: 141 TNTFGAVARVRNALAYATHKFFQENGFIWISS----PIITASDCEGAGEQFCVTTLIPSS 196
A + L +N + + P+ D G V S
Sbjct: 435 -----ASDLINKDLV--------KNNVSFNAKDIQIPVYDTFD----GSDLRV-----LS 472
Query: 197 REAAESPVDAI---PKTKDGLIDW--------SQVYTFGP 225
+E VD I P + W + + FGP
Sbjct: 473 GSISERIVDCIIRLP------VKWETTTQFKATHILDFGP 506
Score = 31.9 bits (72), Expect = 0.61
Identities = 53/353 (15%), Positives = 102/353 (28%), Gaps = 115/353 (32%)
Query: 111 LVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-RNALAYATHKFFQENGFIW 169
+P+ P + V + FL + L + G +V L + + + N
Sbjct: 48 FAADDEPTTPAE--LVGK-FLGYVSSLVEPSKV-GQFDQVLNLCLTEFENCYLEGND--- 100
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPS---SREAAESPVDAIPKTKDGLIDWSQVYTFGPT 226
I + + E LI + +R A+ P D K+ L
Sbjct: 101 IHA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD--KKSNSAL------------ 145
Query: 227 FRAENSNTSRHLAEF--------WMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED 278
FRA ++ +A F + EL DL Y Y
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYF--EELR--DL---------YQTY------------ 180
Query: 279 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS--EH- 335
++ D ++ S + + LI+ E + G ++ E+
Sbjct: 181 ---------HVLV--------GDLIKFS-AETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 336 -----ERYLTEEAFGGCPVI-------------VSDY-PKEIKAFYMRQNDDGRTVAAMD 376
+ YL CP+I + + P E +R G T +
Sbjct: 223 SNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGE-----LRSYLKGATGHSQG 276
Query: 377 MLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 429
++ I + E + + + ++ + +R Y + P+
Sbjct: 277 LVTAVA---IAETDSWE--SFFVSVRKAITV---LFF--IGVRCYEAYPNTSL 319
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
Score = 36.0 bits (84), Expect = 0.024
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 24/159 (15%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM---------ACATAYLQYVVRY 270
VY G FR E + H EF E +A+AD D M Y V Y
Sbjct: 247 VYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTY 305
Query: 271 ILDNCKED---MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 327
D + +DF + +++ L + + + E + V
Sbjct: 306 HPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILD---DICVAK 362
Query: 328 GCDLQSEHER-YLTEEAFGGC-------PVIVSDYPKEI 358
+ L ++ G P + D+P+ +
Sbjct: 363 AVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM 401
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 35.6 bits (82), Expect = 0.021
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATAYLQYV---VRYILDN 274
++ GP +R E+ HL EF M+ + ++ + T +L ++ + + D+
Sbjct: 158 IFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGIDFKIVGDS 216
Query: 275 C---KEDMDFFNTWIEKG 289
C + +D + +E
Sbjct: 217 CMVFGDTLDVMHGDLELS 234
Score = 30.6 bits (69), Expect = 0.98
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 418 LRHYG-SVPHAGFGLGFERLVQFATGVENIRDA 449
R +G P G G G ERL++ +NI+ A
Sbjct: 244 DREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA 276
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 35.3 bits (81), Expect = 0.047
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 418 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 448
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 30.7 bits (69), Expect = 1.1
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 7/42 (16%)
Query: 220 VYTFGP--TFRAENSNTSRHLAEF-----WMIEPELAFADLK 254
F FR E HL + + + D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 35.0 bits (80), Expect = 0.057
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 418 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 448
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 30.3 bits (68), Expect = 1.6
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 7/42 (16%)
Query: 220 VYTFGP--TFRAENSNTSRHLAEF-----WMIEPELAFADLK 254
F FR E HL + + + D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 34.6 bits (79), Expect = 0.080
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 418 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 448
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 29.9 bits (67), Expect = 2.1
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 7/42 (16%)
Query: 220 VYTFGP--TFRAENSNTSRHLAEF-----WMIEPELAFADLK 254
F FR E HL + + + D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 33.8 bits (77), Expect = 0.13
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 418 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 448
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 29.6 bits (66), Expect = 2.6
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 7/42 (16%)
Query: 220 VYTFGP--TFRAENSNTSRHLAEF-----WMIEPELAFADLK 254
F FR E HL + + + D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 31.4 bits (71), Expect = 0.68
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 428 GFGLGFERLVQFATGVENIRD 448
+GL ER G+ NIR+
Sbjct: 456 AWGLSLERPTMIKYGINNIRE 476
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.73
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 25/55 (45%)
Query: 390 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 444
+++ L+ L+ LKL Y D S P L + AT +E
Sbjct: 18 EKQA-LKKLQAS---LKL-------YAD----DSAP----ALAIK-----AT-ME 47
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide
complex, silencing, cell cycle, chromosome partition,
DNA-binding, nucleus; HET: M3L; 2.20A
{Schizosaccharomyces pombe}
Length = 61
Score = 28.0 bits (63), Expect = 1.1
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 315 IKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
+ E+ +KW G D + E+ G ++ + K K
Sbjct: 18 VNKNGINEYYIKWAGYD--WYDNTWEPEQNLFGAEKVLKKWKKRKK 61
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 30.0 bits (67), Expect = 1.5
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 19/85 (22%)
Query: 192 LIPSSREAAESPV-----DAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE- 245
L P AA PV P K GL FR E S L F M E
Sbjct: 146 LSP----AACYPVYPIAASRGPLPKGGLR----FDVAADCFRREPSKHLDRLQSFRMREY 197
Query: 246 -----PELAFADLKDDMACATAYLQ 265
P+ + M A A +
Sbjct: 198 VCIGTPDDVSDFRERWMVRAQAIAR 222
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 29.9 bits (67), Expect = 1.8
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 265 QYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 324
D KE + +++ I +G+I ++ I K +
Sbjct: 254 VVKSFLTSDEYKEVIKYYHKLISEGLIP-------AEWATKDDDAYNADQISDGKTAKTG 306
Query: 325 VKWG 328
V +G
Sbjct: 307 VVFG 310
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural
genomics consortium, S repeat, nucleus, cell cycle;
2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A*
Length = 62
Score = 27.3 bits (61), Expect = 2.1
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 318 KKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
K + V+W G S+ + + E C ++ ++ K+I
Sbjct: 17 GGKVLYKVRWKGYT--SDDDTWEPEIHLEDCKEVLLEFRKKIA 57
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3
tail, choromatin organization modifier, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Length = 78
Score = 27.4 bits (61), Expect = 2.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 315 IKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 360
K K E+LV+W G D SE + + E+ C + D+ +
Sbjct: 24 KNKKGKTEYLVRWKGYD--SEDDTWEPEQHLVNCEEYIHDFNRRHTE 68
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 29.1 bits (66), Expect = 3.1
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 23/84 (27%)
Query: 279 MDFFNTWIEKGIID--RLSTVAERDFVQLSYTDAIELLIKAK---KKFEFLVKWGCDLQS 333
+ W+++G+ D RL D + K F + K+ +++
Sbjct: 183 AKY---WLKQGV-DGFRL--------------DGAMHIFPPAQYDKNFTWWEKFRQEIEE 224
Query: 334 EHERYLTEEAFGGCPVIVSDYPKE 357
YL E + + +
Sbjct: 225 VKPVYLVGEVWDISETVAPYFKYG 248
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP:
b.34.13.2
Length = 70
Score = 26.6 bits (59), Expect = 3.3
Identities = 5/45 (11%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 KAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
+ + ++W S + + E GC +++++ + +
Sbjct: 21 RNGAVKLYRIRWLNYS--SRSDTWEPPENLSGCSAVLAEWKRRKR 63
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 29.2 bits (65), Expect = 3.3
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 418 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 448
L Y VP GLG ERL G E++R
Sbjct: 318 LAKYNIDVPVMNLGLGVERLAMIIYGYEDVRA 349
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 28.7 bits (64), Expect = 4.4
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 265 QYVVRYILDNCKEDMDFFNTWIEKGIID 292
+ + K+ + W ++G+ID
Sbjct: 217 KIKHPFAEVAFKDGIKHVAQWYKEGLID 244
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 28.7 bits (65), Expect = 4.7
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 424 VPHAGFGLGFE---RLVQFATGVENIRDAI 450
V +GFG R V F +E + +A+
Sbjct: 365 VHGSGFGEYGAGHFRAV-FLPPIEILEEAM 393
>1d02_A Type II restriction enzyme MUNI; alpha/beta protein, protein-DNA
complex, distorted double HE hydrolase-DNA complex; HET:
DNA; 1.70A {Mycoplasma} SCOP: c.52.1.8
Length = 202
Score = 28.3 bits (62), Expect = 4.9
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 341 EEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE- 399
F G ++ + PK +K Y + + + + + G +E E
Sbjct: 32 NAVFEGTKYVLYEKPKHLKNLYAQVVLPDDVIKEIFNPLIDLSTTQWGVSPAFAIENTET 91
Query: 400 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 441
++ ++ R W G P AG G ER + T
Sbjct: 92 HKILFGEIKRQDGWV------EGKDPSAGRGNAHERSCKLFT 127
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 28.3 bits (63), Expect = 6.3
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 418 LRHYGSVPHAG--FGLGFERLVQFATGVENIRD 448
L Y +P+ GLG ERL G +++R
Sbjct: 314 LAEYD-IPYPVMNLGLGVERLAMILYGYDDVRK 345
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 27.9 bits (62), Expect = 9.0
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 29/93 (31%)
Query: 266 YVVRYILDNCKEDMDFFNTWIEKGIID--RLSTVAERDFVQLSYTDAIELLIKAKKKFEF 323
V Y+ D K W++ GI D R++ V F +
Sbjct: 206 TVDVYLKDAIK-------MWLDLGI-DGIRMNAVKHMPF-------------------GW 238
Query: 324 LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 356
+ + + + + F G + + K
Sbjct: 239 QKSFMAAVNNYKPVFTFGQWFLGVNEVSPENHK 271
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 27.8 bits (63), Expect = 9.1
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 330 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA-------AMDMLVPRI 382
+E R + G P SD+ + K F + + +A A++ P +
Sbjct: 320 QEAAEFTRRMK----GEMP---SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLL 372
Query: 383 GELIGGS 389
E +GGS
Sbjct: 373 PEFLGGS 379
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,325,161
Number of extensions: 454166
Number of successful extensions: 1101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1022
Number of HSP's successfully gapped: 80
Length of query: 461
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,993,456
Effective search space: 1453617984
Effective search space used: 1453617984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)