RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012529
(461 letters)
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 214 bits (546), Expect = 5e-67
Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 24/322 (7%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
++ R A +V+ AL ++ F I +P + + EG F V
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYF--- 59
Query: 196 SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 255
+ A + + + +VY P +R E +TSRHL E+ ++ E+ F ++
Sbjct: 60 -EKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEE 118
Query: 256 D-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 314
D M A L ++ L+ +++ +D +L++ +A +L
Sbjct: 119 DLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS---------FPQDIPRLTHAEAKRIL 169
Query: 315 IKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 371
K E G DL E ER L E E +G + V+ YP+ ++ FY +DG T
Sbjct: 170 -----KEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTT 224
Query: 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGL 431
+ L+ R E+ G QR R E L L ++ +++ YL++ YG PH GF +
Sbjct: 225 RS--FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAI 282
Query: 432 GFERLVQFATGVENIRDAIPFP 453
G ERL Q G+ N+R A FP
Sbjct: 283 GAERLTQKLLGLPNVRYARAFP 304
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 205 bits (522), Expect = 8e-63
Identities = 80/328 (24%), Positives = 140/328 (42%), Gaps = 10/328 (3%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
+ RT T A+ R++ + ++ F + +P + + EG F VT
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYF--- 88
Query: 196 SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 255
+A + K + + D+ +VY GP FRAENSNT RH+ EF ++ E+AF +
Sbjct: 89 KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYH 148
Query: 256 DMACATAYLQY-VVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 314
++ + L + + +++ ++ + V+L+Y + IE+L
Sbjct: 149 EVLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGIEML 205
Query: 315 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374
A K+ + + + L + + I+ +P EI+ FY + +
Sbjct: 206 RAAGKEIGDFEDLSTENEKFLGK-LVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSN 264
Query: 375 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAGFGLG 432
R E++ G+QR L+ R+ L+ + Y D YG PHAG G+G
Sbjct: 265 SYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIG 324
Query: 433 FERLVQFATGVENIRDAIPFPRTPGSVE 460
ER+V F ++NIR A FPR P +
Sbjct: 325 LERVVMFYLDLKNIRRASLFPRDPKRLR 352
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 195 bits (497), Expect = 8e-60
Identities = 64/329 (19%), Positives = 114/329 (34%), Gaps = 49/329 (14%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN--SNTSRHLAEFWMIEPELA 249
+ + + + K + +++ P R E+ + RH EF ++ E+
Sbjct: 62 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 121
Query: 250 FADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 309
A ++D M + + R + + +
Sbjct: 122 RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRF------------------------ 157
Query: 310 AIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 369
+ FE+ SE + + + I + + DG
Sbjct: 158 ---------EVFEY---------SEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDG 199
Query: 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAG 428
+L GE+ G +RE E + ++ + LN DS+ YL++ G + P AG
Sbjct: 200 FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAG 259
Query: 429 FGLGFERLVQFATGVENIRDAIPFPRTPG 457
G+G ERLV+F G ++I + PFPR PG
Sbjct: 260 AGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 192 bits (489), Expect = 4e-58
Identities = 94/345 (27%), Positives = 152/345 (44%), Gaps = 14/345 (4%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSR 236
A+ EG E F + + A + GL + P FRAE NT+R
Sbjct: 63 ATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYE---IAPIFRAEEHNTTR 119
Query: 237 HLAEFWMI-EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLS 295
HL E W I D ++ M+ + + + Y+ ++ +++D N +E+ +
Sbjct: 120 HLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLP--- 176
Query: 296 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 355
F ++SY A+E+L K+ + + + +Y+ E + YP
Sbjct: 177 ------FPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMEN-ENAPLYFLYQYP 229
Query: 356 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWY 415
E K FY+ + D+ + L R E+ G QRE R + L ++ E LN +S+ +Y
Sbjct: 230 SEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFY 289
Query: 416 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
L YG PH GFGLG ERL++ + NIR+ I FPR +
Sbjct: 290 LKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 334
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 184 bits (467), Expect = 9e-55
Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 20/330 (6%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
+ VR+ + A +F GF+ + +P++ + F +T +
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF-ITHHNALDLDM 73
Query: 200 AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 259
+ K ++ + + RH EF M+E +A+AD D +
Sbjct: 74 YLRIAPELYL-KRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIEL 132
Query: 260 ATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA------ERDFVQLSYTDAIEL 313
+ + + + +L K K A E D L DA +
Sbjct: 133 TESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKA 192
Query: 314 LIKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 372
L + WG + +E + E P +++YP E+ R + +
Sbjct: 193 LAE-SIGITVEKSWGLGRIVTEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPEIT 250
Query: 373 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--------YWWYLDLRHYGSV 424
+ + E+ G E R E + + Y+ YG
Sbjct: 251 DRFEFFIGG-REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLP 309
Query: 425 PHAGFGLGFERLVQFATGVENIRDAIPFPR 454
P AG G+G +R++ T IRD I FP
Sbjct: 310 PTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 176 bits (446), Expect = 1e-51
Identities = 76/348 (21%), Positives = 128/348 (36%), Gaps = 38/348 (10%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLIPSSREA-AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRH 237
EGA + + + A +SP D Y FR E+ R
Sbjct: 63 TPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDR--YYQIVKCFRDEDLRADRQ 120
Query: 238 LAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 297
EF I+ E +F A ++++ L+ D+ F R +
Sbjct: 121 -PEFTQIDVETSFMTAPQVREVMEALVRHLW---LEVKGVDLGDFPVMTFAEAERRYGSD 176
Query: 298 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL---QSEHERYLTEEAFGGCPVIVSDY 354
+ + ++ W D + + E LT
Sbjct: 177 KP----------------DLRDESKWAPLWVIDFPMFEDDGEGGLTAMHH------PFTS 214
Query: 355 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RD 410
PK++ A ++ + A DM++ E+ GGS R + + L +N R+
Sbjct: 215 PKDMTAAELKAAPENAVANAYDMVING-YEVGGGSVRIHNGDMQQTVFGILGINEEEQRE 273
Query: 411 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 458
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T +
Sbjct: 274 KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAA 321
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 168 bits (427), Expect = 7e-49
Identities = 71/353 (20%), Positives = 124/353 (35%), Gaps = 37/353 (10%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPSSREA-AESPVDAIPKTKDGLIDWSQVYTFGPTFR 228
+ +P +T S EGA + P A +SP + K + + + FR
Sbjct: 62 VETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSP--QLFKQMLMVAGLDRYFQIARCFR 119
Query: 229 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEK 288
E+ +F ++ E++F +++D + + +V R L ++ E
Sbjct: 120 DEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEA 178
Query: 289 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 348
Y L + +F ++V + E E T
Sbjct: 179 MER---------------YGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYM----HH 219
Query: 349 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN 408
S +P++ + + D GR A LV E+ GGS R L +
Sbjct: 220 PFTSPHPED---LPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIG 276
Query: 409 RDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457
+ + ++L+ YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 277 EEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKE 329
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 60.2 bits (146), Expect = 3e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 52.0 bits (124), Expect = 7e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 40.8 bits (95), Expect = 3e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 39.6 bits (92), Expect = 7e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 33.9 bits (76), Expect = 0.039
Identities = 44/323 (13%), Positives = 82/323 (25%), Gaps = 51/323 (15%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPII--TASDCEGAGE------------QFCV 189
+ + G+ I PI+ T GE +
Sbjct: 12 LPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN 71
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELA 249
+ E V A + +++ GP FR E R+ +
Sbjct: 72 GDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFG 131
Query: 250 FADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIE---------KGIIDRLSTVAER 300
D ++ + +E +++ +
Sbjct: 132 LQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDE 191
Query: 301 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 360
D + YT+ + +L + + L+ L + E G C ++ S
Sbjct: 192 DCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVN 251
Query: 361 FYMRQNDD---GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 417
+ + D + + G + G GR D L
Sbjct: 252 QRLVRGLDYYNRTVFEWVTNSLGSQGTVCAG-----------GRYDGL------------ 288
Query: 418 LRHYG--SVPHAGFGLGFERLVQ 438
+ G + P GF +G ERLV
Sbjct: 289 VEQLGGRATPAVGFAMGLERLVL 311
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 27.9 bits (62), Expect = 0.46
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 316 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 366
+ ++LVKW L + + IV P+++K F R+N
Sbjct: 22 DGTSQLQYLVKW-RRLNYDEATWENATD------IVKLAPEQVKHFQNREN 65
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 27.8 bits (62), Expect = 0.54
Identities = 5/45 (11%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 315 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
+ + ++W + S + + E GC +++++ + +
Sbjct: 20 DRNGAVKLYRIRW-LNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 29.7 bits (66), Expect = 0.71
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 429 FGLGFERLVQFATGVENIRD 448
FGLG ERL G+ +IR
Sbjct: 231 FGLGVERLAMLRYGIPDIRY 250
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 26.7 bits (59), Expect = 1.3
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 315 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 357
K K E+LV+W SE + + E+ C + D+ +
Sbjct: 17 KNKKGKTEYLVRW-KGYDSEDDTWEPEQHLVNCEEYIHDFNRR 58
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 26.8 bits (59), Expect = 1.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 292 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 326
DR+ V D S+ A+E + KA F+V+
Sbjct: 59 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 93
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity
protein par6 (Par-6B) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 98
Score = 26.8 bits (59), Expect = 2.3
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 292 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 326
D + V + + ++++ VK
Sbjct: 61 DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK 95
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 26.4 bits (58), Expect = 2.5
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 308 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 347
+ L K+ +EFL+KW D H + T E+ G
Sbjct: 27 EKTVPDLNNCKENYEFLIKW-TDESHLHNTWETYESIGQV 65
>d1mwqa_ d.58.4.7 (A:) Hypothetical protein HI0828 {Haemophilus
influenzae [TaxId: 727]}
Length = 100
Score = 26.4 bits (58), Expect = 2.7
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 140 RTNTFGAVARVRNA-LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP--SS 196
NT VR LA K Q + + P D + F +T+I +
Sbjct: 12 IPNTLEKRLAVREQHLAR--LKQLQAENRLLTAGPNPAIDDENPSEAGFTGSTVIAQFEN 69
Query: 197 REAAESPVDAIPKTKDGLIDWSQVYTFGPTF 227
+AA+ P + G+ V F F
Sbjct: 70 LQAAKDWAAQDPYVEAGVYADVIVKPFKKVF 100
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit
(RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 26.3 bits (58), Expect = 4.0
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 31 MIVVAGWVRTLRAQSSVTFIEVNDGS--CLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
+ + G +R + +++D + + Q V T D + V + + +
Sbjct: 30 QVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTV----VPPETYVKV 85
Query: 89 QGNVVPSQGSKQKVELKVNKI 109
G++ Q K V K+ +
Sbjct: 86 AGHLRSFQNKKSLVAFKIMPL 106
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 25.9 bits (56), Expect = 7.2
Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 2/114 (1%)
Query: 194 PSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 253
+ A +A T+ G + + T + + + +
Sbjct: 47 GDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINK 106
Query: 254 KDDMACATAYLQYVVRYILDNCKEDM--DFFNTWIEKGIIDRLSTVAERDFVQL 305
++ M A + +Y KED + + +K ++ V +F++
Sbjct: 107 EEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLES 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,787,394
Number of extensions: 85604
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 32
Length of query: 461
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,199,356
Effective search space: 447359788
Effective search space used: 447359788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)