BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012530
         (461 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
           Pseudotuberculosis
 pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
           Pseudotuberculosis
 pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
           Pseudotuberculosis
 pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
           Pseudotuberculosis
          Length = 554

 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/445 (44%), Positives = 274/445 (61%), Gaps = 24/445 (5%)

Query: 2   DHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLS 61
           DHRA+ QAE+IN+   PVL++ GG +SPE Q PKLLW+K++   +WS V    DL D+L+
Sbjct: 113 DHRAITQAERINATKHPVLEFVGGVISPEXQTPKLLWLKQHXPNTWSNVGHLFDLPDFLT 172

Query: 62  YRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHH 121
           +RAT D+TRSLC+TVCKWTYLGH                  WD  +++ +GL DL+D + 
Sbjct: 173 WRATKDETRSLCSTVCKWTYLGHEDR---------------WDPSYFKLVGLADLLDNNA 217

Query: 122 AKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXX 181
           AKIG +V   G PLG GL+  AA E GL+PGT V  S+IDAHAG +G++ +         
Sbjct: 218 AKIGATVKPXGAPLGHGLSQRAASEXGLIPGTAVSVSIIDAHAGTIGILGA------SGV 271

Query: 182 XXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALL 241
                    R+ L+ GTST H A SR+  FI G+WGP++SA++P++WL EGGQSATGAL+
Sbjct: 272 TGENANFDRRIALIGGTSTAHXAXSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALI 331

Query: 242 DYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGN 301
           D+II++H               +++E LN  L     E  +  +A LT DIH LP FHGN
Sbjct: 332 DHIIQSHPCYPALLEQAKNKGETIYEALNYILRQXAGEPEN--IAFLTNDIHXLPYFHGN 389

Query: 302 RSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLAC 361
           RSP A+P   GII G+ L ++ +  AL YLAT+Q +A GTRHI+E  N +G+ IDT  A 
Sbjct: 390 RSPRANPNLTGIITGLKLSTTPEDXALRYLATIQALALGTRHIIETXNQNGYNIDTXXAS 449

Query: 362 GGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSLIEAMKAMNAAGQ 421
           GG  KNP+F+Q+HA+  GC  +LP E+E+               + SL EA  A +  G+
Sbjct: 450 GGGTKNPIFVQEHANATGCAXLLPEESEAXLLGSAXXGTVAAGVFESLPEAXAAXSRIGK 509

Query: 422 VIHPSKDPKVKKYHDAKYLIFRELF 446
            + P  + K+K Y+D KY +F + +
Sbjct: 510 TVTPQTN-KIKAYYDRKYRVFHQXY 533


>pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate
           Selection Strategy Of Ribulokinase
 pdb|3QDK|B Chain B, Structural Insight On Mechanism And Diverse Substrate
           Selection Strategy Of Ribulokinase
 pdb|3QDK|C Chain C, Structural Insight On Mechanism And Diverse Substrate
           Selection Strategy Of Ribulokinase
 pdb|3QDK|D Chain D, Structural Insight On Mechanism And Diverse Substrate
           Selection Strategy Of Ribulokinase
          Length = 572

 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 160/385 (41%), Gaps = 50/385 (12%)

Query: 3   HRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSD 58
           H A  +A  IN     R    L   GG +S E    K+  + +  ++ ++   ++++ +D
Sbjct: 129 HAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAKVWQILDEAEDVYNRTDQFLEATD 188

Query: 59  WLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLID 118
           W+  + TG   ++ CT   K  +           +G+   E     D   E +    L  
Sbjct: 189 WIVSQMTGKIVKNSCTAGYKAIW--------HKREGYPSNEFFKALDPRLEHLTTTKL-- 238

Query: 119 GHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXX 178
                  R    P      GL P  A+++GL PG  V    +DAHA    V  + P    
Sbjct: 239 -------RGDIVPLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPG--- 288

Query: 179 XXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATG 238
                       ++V+  GTS CHM +   +  + G+ G     ++P +   E GQSA G
Sbjct: 289 ------------KLVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAVG 336

Query: 239 ALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDF 298
            +  + ++ H              V++  LL     S +    S  +A        L  +
Sbjct: 337 DIFAWFVK-HGVSAATFDEAQEKGVNVHALLEEK-ASQLRPGESGLLA--------LDWW 386

Query: 299 HGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTL 358
           +GNRS + D +  G++ G TL +  ++   +Y A ++  A+GTR IV+  +  G ++  L
Sbjct: 387 NGNRSILVDTELSGMLLGYTLQTKPEE---IYRALLEATAFGTRAIVDAFHGRGVEVHEL 443

Query: 359 LACGGL-AKNPLFLQQHADIIGCPI 382
            ACGGL  KN L +Q  AD+    I
Sbjct: 444 YACGGLPQKNHLLMQIFADVTNREI 468


>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
           Thermophilus Hb8
 pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
           Thermophilus Hb8
          Length = 495

 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
           T D++ +P F G  +P  DP ++G + G+T  +S   LA    A ++G+A+  R +V   
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLAR---AALEGVAFQVRDVVLAM 391

Query: 349 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 390
               G ++  L A GG+A+N LFL+  AD++G P+ +P   E+
Sbjct: 392 EEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTET 434


>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
           Analog Showing Substantial Domain Motion
 pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
           Analog Showing Substantial Domain Motion
 pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
           Analog Showing Substantial Domain Motion
 pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
           Analog Showing Substantial Domain Motion
 pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
           Analog Showing Substantial Domain Motion
 pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
           Analog Showing Substantial Domain Motion
          Length = 501

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
           T  ++V+P F G  +P  DP ++G I G+T   +      +  AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAM 395

Query: 349 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 389
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437


>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
           Iiiglc With Glycerol Kinase
 pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
           Iiiglc With Glycerol Kinase
 pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
           Target Protein Is Controlled By Phosphorylation
 pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
           Target Protein Is Controlled By Phosphorylation
 pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
           Target Protein Is Controlled By Phosphorylation
 pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
           The Mutant A65t In An Inactive Tetramer: Conformational
           Changes And Implications For Allosteric Regulation
 pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
           The Mutant A65t In An Inactive Tetramer: Conformational
           Changes And Implications For Allosteric Regulation
 pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
           The Mutant A65t In An Inactive Tetramer: Conformational
           Changes And Implications For Allosteric Regulation
 pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
           The Mutant A65t In An Inactive Tetramer: Conformational
           Changes And Implications For Allosteric Regulation
 pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
           Glycerol Kinase And The Allosteric Regulator Fructose
           1,6-bisphosphate.
 pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
           Glycerol Kinase And The Allosteric Regulator Fructose
           1,6-bisphosphate.
 pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
           Glycerol Kinase And The Allosteric Regulator Fructose
           1,6-bisphosphate.
 pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
           Glycerol Kinase And The Allosteric Regulator Fructose
           1,6-bisphosphate
          Length = 501

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
           T  ++V+P F G  +P  DP ++G I G+T   +      +  AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAM 395

Query: 349 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 389
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437


>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
           The Mutant A65t In An Inactive Tetramer: Conformational
           Changes And Implications For Allosteric Regulation
 pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
           The Mutant A65t In An Inactive Tetramer: Conformational
           Changes And Implications For Allosteric Regulation
 pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
           The Mutant A65t In An Inactive Tetramer: Conformational
           Changes And Implications For Allosteric Regulation
 pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
           The Mutant A65t In An Inactive Tetramer: Conformational
           Changes And Implications For Allosteric Regulation
          Length = 501

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
           T  ++V+P F G  +P  DP ++G I G+T   +      +  AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAM 395

Query: 349 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 389
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437


>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
           Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
           Microfluidic Crystallization Devices
 pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
           Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
           Microfluidic Crystallization Devices
 pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
           Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
           Microfluidic Crystallization Devices
 pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
           Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
           Microfluidic Crystallization Devices
 pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
           Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
           Microfluidic Crystallization Devices
 pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
           Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
           Microfluidic Crystallization Devices
 pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
           Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
           Microfluidic Crystallization Devices
 pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
           Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
           Microfluidic Crystallization Devices
          Length = 526

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
           T  ++V+P F G  +P  DP ++G I G+T   +      +  AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAM 395

Query: 349 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 389
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437


>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
           From A Hyperthermophilic Archaeon
 pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
           From A Hyperthermophilic Archaeon
          Length = 497

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 290 EDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 349
           E ++ +P F G  +P  D  ++GII G+T  +  + LA    AT++ IAY TR +V+   
Sbjct: 333 EGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLA---RATLEAIAYLTRDVVDEME 389

Query: 350 AHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 390
               +I  L   GG   N   +Q  ADI+   +I P   E+
Sbjct: 390 KL-VQIKELRVDGGATANDFLMQFQADILNRKVIRPVVKET 429


>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
 pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
 pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
 pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
 pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
 pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
          Length = 506

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 291 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 350
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 398

Query: 351 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 409
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 399 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 458

Query: 410 IEAMKAMNAAGQVIHP 425
            E +K+M   GQ+  P
Sbjct: 459 DE-LKSMAEEGQMFTP 473


>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
 pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
 pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
 pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
 pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
 pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
          Length = 506

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 291 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 350
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 398

Query: 351 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 409
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 399 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 458

Query: 410 IEAMKAMNAAGQVIHP 425
            E +K+M   GQ+  P
Sbjct: 459 DE-LKSMAEEGQMFTP 473


>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
           Glycerol Kinase From Enterococcus Casseliflavus With
           Glycerol
 pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
           Glycerol Kinase From Enterococcus Casseliflavus With
           Glycerol
          Length = 518

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 291 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 350
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 354 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 410

Query: 351 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 409
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 411 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 470

Query: 410 IEAMKAMNAAGQVIHP 425
            E +K+M   GQ+  P
Sbjct: 471 DE-LKSMAEEGQMFTP 485


>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
           Glycerol
 pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
           Glycerol
          Length = 487

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 291 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 350
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 337 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 393

Query: 351 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 409
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 394 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 453

Query: 410 IEAMKAMNAAGQVIHP 425
            E +K+M   GQ+  P
Sbjct: 454 DE-LKSMAEEGQMFTP 468


>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
           His232ala Complexed With Glycerol
 pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
           His232ala Complexed With Glycerol
          Length = 505

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 291 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 350
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 397

Query: 351 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 409
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 398 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 457

Query: 410 IEAMKAMNAAGQVIHP 425
            E +K+M   GQ+  P
Sbjct: 458 DE-LKSMAEEGQMFTP 472


>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
 pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
          Length = 505

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 291 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 350
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 397

Query: 351 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 409
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 398 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 457

Query: 410 IEAMKAMNAAGQVIHP 425
            E +K+M   GQ+  P
Sbjct: 458 DE-LKSMAEEGQMFTP 472


>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
           From Staphylococcus Aureus In Complex With Glycerol.
 pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
           From Staphylococcus Aureus In Complex With Glycerol.
 pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
           From Staphylococcus Aureus In Complex With Glycerol.
 pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
           From Staphylococcus Aureus In Complex With Glycerol.
 pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
           From Staphylococcus Aureus In Complex With Adp And
           Glycerol
 pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
           From Staphylococcus Aureus In Complex With Adp And
           Glycerol
 pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
           From Staphylococcus Aureus In Complex With Adp And
           Glycerol
 pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
           From Staphylococcus Aureus In Complex With Adp And
           Glycerol
          Length = 501

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 4/103 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-H 347
           TE ++V+P F G  +P  D +++G I G+T  + ++       AT++ + Y TR + E  
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFI---RATLESLCYQTRDVXEAX 397

Query: 348 CNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 390
               G  + +L   GG  KN    Q  ADI+   +  P   E+
Sbjct: 398 SKDSGIDVQSLRVDGGAVKNNFIXQFQADIVNTSVERPEIQET 440


>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
           Nt3060
 pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
           Nt3060
          Length = 504

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 293 HVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH- 351
           + +P F G  +P   P ++G + G+T   +   +A    A ++  A+ +R +V+  NA  
Sbjct: 344 YFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIA---RAALEATAFQSREVVDAMNADS 400

Query: 352 GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 390
           G  +  L   GG+  N L +Q  AD +G  ++ P+  E+
Sbjct: 401 GVDLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAET 439


>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
           Rhodospirillum Rubrum
 pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
           Rhodospirillum Rubrum
          Length = 508

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 24/224 (10%)

Query: 223 MVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNS 282
           +VP  +   G  +ATG+ L+++ +                    E  +  L+++  E   
Sbjct: 290 LVPGLYAPNGCXAATGSALNWLAKLLAPEAG-------------EAAHAQLDALAAE--- 333

Query: 283 PFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTR 342
             V A  + +  LP F G ++PI DP + G   G++L  +      L+ A ++ +A   R
Sbjct: 334 --VPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGH---LWRALLEAVALAFR 388

Query: 343 HIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXX 402
           H V   +  GH      A  G  ++ ++    AD++  P+ L   N              
Sbjct: 389 HHVAVLDDIGHAPQRFFASDGGTRSRVWXGIXADVLQRPVQL-LANPLGSAVGAAWVAAI 447

Query: 403 XKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELF 446
                   + + A+   G+ I P  DP   + +D  Y  F  L+
Sbjct: 448 GGGDDLGWDDVTALVRTGEKITP--DPAKAEVYDRLYRDFSALY 489


>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
           With Xylulose
 pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
           With Xylulose
 pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
 pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
          Length = 484

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
            E +  LP   G R+P  +P++KG+  G+T      +LA    A ++G+ Y     ++  
Sbjct: 324 AEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVV 380

Query: 349 NAHGHKIDTLLACGGLAKNPLFLQQHADIIG 379
           +A G K  ++   GG A++  + Q  ADI G
Sbjct: 381 HACGIKPQSVTLIGGGARSEYWRQMLADISG 411



 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 2   DHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLS 61
           D R  ++   + +R        G  + P    PKLLWV+ +  E +  + + +   D+L 
Sbjct: 98  DGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLR 157

Query: 62  YRATGD 67
            R TG+
Sbjct: 158 LRMTGE 163


>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
           Glycerol From Sinorhizobium Meliloti 1021
 pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
           Glycerol From Sinorhizobium Meliloti 1021
 pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
           Glycerol From Sinorhizobium Meliloti 1021
 pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
           Glycerol From Sinorhizobium Meliloti 1021
          Length = 520

 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 346
           +++++++P F G  +P  DP ++G I G T ++   + A    A ++ + Y TR ++E  
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGXTRNTGPAEFA---RAALEAVCYQTRDLLEAX 416

Query: 347 HCNAHGHKIDTLLAC-GGLAKNPLFLQQHADIIGCPIILP 385
           H +   +  DT+L   GG   +    Q+ +D++  P+  P
Sbjct: 417 HKDWRRNGNDTVLRVDGGXVASDWTXQRLSDLLDAPVDRP 456


>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
           With Adp
 pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
           With Adp
          Length = 507

 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
           T  +  +P F G  +P     ++  I GMT ++    +     A ++GIA+    IV+  
Sbjct: 347 TTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVR---ALLEGIAFQLNEIVDSL 403

Query: 349 NAH-GHKIDTLLAC-GGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRY 406
            +  G ++  +L C GG+ KN  F+Q ++DII   I + +  E              K +
Sbjct: 404 TSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIW 463

Query: 407 SSLIEAMKAMNAAGQVIH 424
            SL      +  +  V H
Sbjct: 464 DSLDSVKSLLRRSDAVFH 481


>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
           With Bound Glycerol
 pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
           With Bound Glycerol
 pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
           With Bound Glycerol
 pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
           With Bound Glycerol
          Length = 503

 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
           T  +  +P F G  +P     ++  I GMT ++    +     A ++GIA+    IV+  
Sbjct: 343 TTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVR---ALLEGIAFQLNEIVDSL 399

Query: 349 NAH-GHKIDTLLAC-GGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRY 406
            +  G ++  +L C GG+ KN  F+Q ++DII   I + +  E              K +
Sbjct: 400 TSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIW 459

Query: 407 SSLIEAMKAMNAAGQVIH 424
            SL      +  +  V H
Sbjct: 460 DSLDSVKSLLRRSDAVFH 477


>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
           Acidophilus
 pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
           Lactobacillus Acidophilus
 pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
           Lactobacillus Acidophilus
          Length = 504

 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 289 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 348
           + ++  LP   G R+PI D  ++G   G+T    + + A    A ++GI +       + 
Sbjct: 331 SRNLIFLPYLGGERAPIWDANARGSFVGLTRXHQKPEXAR---AVIEGIIFNLYDAASNL 387

Query: 349 NAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 390
             +  K   + A GG  K+    Q  A+I   PI+  +E +S
Sbjct: 388 IKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTXKEQQS 429



 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 4   RAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR 63
           +++ Q  K       + +  G    P     KLLW+K    E +S   +W+ + +++ +R
Sbjct: 105 KSIVQDAKNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFSQAQKWIGIKEYIIFR 164

Query: 64  ATG 66
            TG
Sbjct: 165 LTG 167


>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
           Bifidobacterium Adolescentis
          Length = 515

 Score = 37.0 bits (84), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 292 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 351
           I ++P F G R+P   P +     G TL ++ ++   L  A V+G+    R  +E   + 
Sbjct: 365 ITLVPYFDGERTP-NRPNATATFSGXTLANTTREN--LARAFVEGLLCSQRDCLELIRSL 421

Query: 352 GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 389
           G  I  +L  GG AK+         I+G  +  P  +E
Sbjct: 422 GASITRILLIGGGAKSEAIRTLAPSILGXDVTRPATDE 459


>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
           Violaceum
 pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
           Violaceum
          Length = 511

 Score = 34.3 bits (77), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 295 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 354
           +P  H  R P+  P  +G + G+T  ++  Q   + LA ++G A   R   E       K
Sbjct: 348 VPYLHAERCPVELPAPRGALLGVTGATTRAQ---ILLAVLEGAALSLRWCAELLGX--EK 402

Query: 355 IDTLLACGGLAKNPLFLQQHADIIGCPIIL 384
           +  L   GG A++  +L+  AD +   +++
Sbjct: 403 VGLLKVVGGGARSEAWLRXIADNLNVSLLV 432



 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 131 PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVME 171
           PG  +G G++  AA++ G V GTPV   L DA A   GVGV++
Sbjct: 214 PGEQVG-GVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLD 255


>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
 pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
 pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
           Apo Form
 pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
           Apo Form
 pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
           Complexed With Nadp And 15-Oxo-Pge2
 pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
           Complexed With Nadp And 15-Oxo-Pge2
 pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
           And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
           Prostaglandin 13-Reductase Complex
 pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
           And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
           Prostaglandin 13-Reductase Complex
          Length = 333

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 48  SMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEAC 101
           S++++ + +  ++ YR  GD        + KW   G     +   KGF +M A 
Sbjct: 263 SIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAA 316


>pdb|3IX1|A Chain A, Periplasmic
           N-Formyl-4-Amino-5-Aminomethyl-2-Methylpyrimidine
           Binding Protein From Bacillus Halodurans
 pdb|3IX1|B Chain B, Periplasmic
           N-Formyl-4-Amino-5-Aminomethyl-2-Methylpyrimidine
           Binding Protein From Bacillus Halodurans
          Length = 302

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 45  ESWSMVFRWMDLSDWLSYRATGDDTRSLCT 74
           ESW  V  W+D  DWL      +D  S  T
Sbjct: 272 ESWEEVISWLDAHDWLEQPVVAEDAFSSIT 301


>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
           With Bound Product Analogue, 10-
           Decarboxymethylaclacinomycin T (Dcmat)
 pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
           With Bound Product Analogue, 10-
           Decarboxymethylaclacinomycin A (dcma)
          Length = 298

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 97  DMEACGWDDEFWEEIGLGDL--IDGHHAKIGRSVA--FPGHPLGSG 138
           ++ A GW DEF   +  G L  I   H   GRS    F  HP G G
Sbjct: 33  NLSALGWPDEFARRLADGGLHVIRYDHRDTGRSTTRDFAAHPYGFG 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,516,091
Number of Sequences: 62578
Number of extensions: 531132
Number of successful extensions: 1031
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 41
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)