Query 012530
Match_columns 461
No_of_seqs 235 out of 1307
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01315 5C_CHO_kinase FGGY-f 100.0 2.2E-78 4.7E-83 639.9 37.7 425 1-452 107-540 (541)
2 TIGR01314 gntK_FGGY gluconate 100.0 1.2E-75 2.6E-80 615.7 39.7 402 1-459 98-503 (505)
3 PRK15027 xylulokinase; Provisi 100.0 1.5E-74 3.2E-79 604.4 37.1 386 1-453 97-483 (484)
4 PRK04123 ribulokinase; Provisi 100.0 1.6E-71 3.4E-76 590.0 39.3 400 1-449 120-533 (548)
5 TIGR01234 L-ribulokinase L-rib 100.0 1.3E-71 2.8E-76 588.5 38.4 404 1-452 123-533 (536)
6 PRK00047 glpK glycerol kinase; 100.0 6.8E-72 1.5E-76 586.3 34.4 381 1-452 105-497 (498)
7 PRK10939 autoinducer-2 (AI-2) 100.0 9.1E-72 2E-76 587.9 35.0 397 1-454 103-507 (520)
8 TIGR01312 XylB D-xylulose kina 100.0 6.3E-71 1.4E-75 578.1 35.8 382 1-447 97-481 (481)
9 COG1069 AraB Ribulose kinase [ 100.0 8.4E-71 1.8E-75 549.0 34.0 423 1-458 111-534 (544)
10 PTZ00294 glycerol kinase-like 100.0 1.2E-70 2.6E-75 577.3 33.8 384 1-454 104-503 (504)
11 PLN02295 glycerol kinase 100.0 2.4E-70 5.2E-75 575.8 33.4 381 1-454 104-509 (512)
12 TIGR01311 glycerol_kin glycero 100.0 3.9E-70 8.5E-75 572.3 33.7 380 1-452 101-493 (493)
13 PRK10331 L-fuculokinase; Provi 100.0 5.4E-67 1.2E-71 545.4 31.9 363 1-437 101-469 (470)
14 COG1070 XylB Sugar (pentulose 100.0 4.7E-66 1E-70 540.9 36.5 393 1-456 104-501 (502)
15 TIGR02628 fuculo_kin_coli L-fu 100.0 4E-64 8.6E-69 522.9 31.0 358 1-425 100-464 (465)
16 PRK10640 rhaB rhamnulokinase; 100.0 1.8E-62 3.8E-67 510.1 24.9 366 1-448 85-466 (471)
17 COG0554 GlpK Glycerol kinase [ 100.0 2.1E-61 4.5E-66 475.3 30.6 383 1-453 105-497 (499)
18 PLN02669 xylulokinase 100.0 1.7E-61 3.8E-66 510.1 31.9 378 1-450 139-550 (556)
19 TIGR02627 rhamnulo_kin rhamnul 100.0 4.7E-57 1E-61 468.8 21.8 338 1-415 97-447 (454)
20 KOG2517 Ribulose kinase and re 100.0 1.9E-53 4.1E-58 428.7 28.6 393 1-458 110-515 (516)
21 PF02782 FGGY_C: FGGY family o 100.0 3.9E-35 8.5E-40 271.4 17.0 196 192-403 1-198 (198)
22 KOG2531 Sugar (pentulose and h 100.0 1.5E-33 3.2E-38 274.1 26.1 380 1-449 139-544 (545)
23 PF00370 FGGY_N: FGGY family o 99.9 1.7E-28 3.7E-33 234.7 6.3 145 1-168 99-245 (245)
24 TIGR00241 CoA_E_activ CoA-subs 98.3 5.5E-07 1.2E-11 86.2 5.6 75 316-398 172-248 (248)
25 PRK13317 pantothenate kinase; 97.9 0.00083 1.8E-08 65.2 17.5 167 190-400 97-273 (277)
26 PRK13410 molecular chaperone D 97.2 0.0013 2.8E-08 71.7 9.0 82 322-406 296-381 (668)
27 CHL00094 dnaK heat shock prote 97.1 0.0017 3.8E-08 70.4 8.9 62 347-408 318-383 (621)
28 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.0018 3.9E-08 62.7 7.8 77 318-401 210-288 (293)
29 COG1924 Activator of 2-hydroxy 97.0 0.011 2.3E-07 58.6 12.1 75 318-400 312-389 (396)
30 PTZ00186 heat shock 70 kDa pre 96.8 0.0043 9.3E-08 67.5 9.2 82 321-405 320-405 (657)
31 TIGR02259 benz_CoA_red_A benzo 96.8 0.0031 6.8E-08 63.0 7.2 77 317-399 350-432 (432)
32 PRK00290 dnaK molecular chaper 96.8 0.0047 1E-07 67.2 9.0 86 320-405 292-378 (627)
33 PRK05183 hscA chaperone protei 96.6 0.0072 1.6E-07 65.5 9.0 82 321-405 295-380 (616)
34 TIGR02350 prok_dnaK chaperone 96.6 0.007 1.5E-07 65.5 8.5 81 322-405 292-376 (595)
35 TIGR02529 EutJ ethanolamine ut 96.6 0.0062 1.3E-07 57.9 7.1 64 329-397 174-238 (239)
36 PRK15080 ethanolamine utilizat 96.6 0.0076 1.7E-07 58.3 7.9 69 325-398 197-266 (267)
37 TIGR03286 methan_mark_15 putat 96.6 0.009 1.9E-07 60.3 8.5 75 319-399 326-401 (404)
38 TIGR01991 HscA Fe-S protein as 96.6 0.0086 1.9E-07 64.8 8.9 84 321-404 279-363 (599)
39 PF00012 HSP70: Hsp70 protein; 96.5 0.0055 1.2E-07 66.3 7.4 83 322-404 296-379 (602)
40 TIGR00555 panK_eukar pantothen 96.5 0.14 3E-06 49.6 15.8 163 191-397 103-278 (279)
41 PRK01433 hscA chaperone protei 96.4 0.013 2.9E-07 63.1 9.2 82 321-404 277-359 (595)
42 TIGR02261 benz_CoA_red_D benzo 96.3 0.014 3.1E-07 55.7 7.7 76 318-399 181-262 (262)
43 PRK13928 rod shape-determining 96.3 0.011 2.4E-07 59.1 7.4 80 322-401 240-323 (336)
44 PTZ00400 DnaK-type molecular c 96.2 0.013 2.8E-07 64.1 7.8 83 320-405 333-419 (663)
45 PLN03184 chloroplast Hsp70; Pr 96.2 0.017 3.7E-07 63.3 8.6 82 321-405 332-417 (673)
46 PTZ00009 heat shock 70 kDa pro 96.0 0.021 4.5E-07 62.5 8.2 81 321-404 299-384 (653)
47 PRK13411 molecular chaperone D 95.8 0.025 5.5E-07 61.8 7.8 82 321-405 294-380 (653)
48 PRK11678 putative chaperone; P 95.8 0.058 1.3E-06 56.1 10.0 82 317-401 365-447 (450)
49 COG2377 Predicted molecular ch 95.5 0.14 3E-06 50.7 11.0 56 322-383 264-320 (371)
50 PRK13927 rod shape-determining 95.4 0.04 8.7E-07 55.0 7.0 80 322-401 241-324 (334)
51 PRK13930 rod shape-determining 95.1 0.045 9.8E-07 54.7 6.5 79 323-401 246-328 (335)
52 PRK09585 anmK anhydro-N-acetyl 94.9 0.12 2.5E-06 52.1 8.5 60 321-386 259-318 (365)
53 TIGR00904 mreB cell shape dete 94.8 0.085 1.8E-06 52.7 7.4 79 323-401 245-327 (333)
54 KOG0103 Molecular chaperones H 94.5 0.12 2.5E-06 55.0 7.6 82 322-403 301-383 (727)
55 PF03702 UPF0075: Uncharacteri 94.4 0.22 4.8E-06 50.2 9.2 76 322-403 258-339 (364)
56 PRK13929 rod-share determining 94.3 0.088 1.9E-06 52.7 6.2 44 355-398 278-323 (335)
57 PLN02920 pantothenate kinase 1 94.2 2.5 5.3E-05 42.8 15.8 167 190-399 166-350 (398)
58 PF11104 PilM_2: Type IV pilus 93.7 0.12 2.6E-06 51.9 5.8 58 329-386 247-306 (340)
59 PRK09472 ftsA cell division pr 93.4 0.38 8.2E-06 49.7 9.1 65 322-386 289-360 (420)
60 PF03630 Fumble: Fumble ; Int 92.3 1.3 2.8E-05 44.3 10.8 166 190-398 157-339 (341)
61 PF01869 BcrAD_BadFG: BadF/Bad 92.1 0.85 1.9E-05 44.0 9.1 69 331-399 196-271 (271)
62 TIGR01174 ftsA cell division p 91.7 0.41 9E-06 48.5 6.7 66 320-387 279-347 (371)
63 COG0443 DnaK Molecular chapero 91.6 0.68 1.5E-05 49.9 8.4 55 353-407 308-363 (579)
64 TIGR01175 pilM type IV pilus a 91.6 0.46 1E-05 47.6 6.8 59 329-387 255-315 (348)
65 PF02543 CmcH_NodU: Carbamoylt 91.3 1.1 2.3E-05 45.4 9.0 81 321-405 133-217 (360)
66 TIGR03281 methan_mark_12 putat 90.2 0.77 1.7E-05 44.5 6.4 67 330-401 242-311 (326)
67 COG2192 Predicted carbamoyl tr 89.9 1 2.2E-05 47.1 7.4 80 322-405 257-339 (555)
68 PRK09604 UGMP family protein; 89.8 0.97 2.1E-05 45.2 7.2 80 322-405 226-312 (332)
69 PRK14878 UGMP family protein; 89.4 1.4 3E-05 43.8 7.9 72 322-397 213-287 (323)
70 KOG0100 Molecular chaperones G 89.3 1.1 2.4E-05 45.0 6.8 53 353-405 361-415 (663)
71 PF06723 MreB_Mbl: MreB/Mbl pr 89.0 0.39 8.5E-06 47.7 3.7 43 356-398 275-318 (326)
72 PF07318 DUF1464: Protein of u 87.5 1.4 3.1E-05 43.7 6.3 76 330-409 240-324 (343)
73 TIGR00143 hypF [NiFe] hydrogen 86.5 1.4 3.1E-05 48.5 6.4 74 322-399 630-710 (711)
74 KOG0101 Molecular chaperones H 85.2 2.1 4.6E-05 45.8 6.7 74 329-406 313-388 (620)
75 PTZ00340 O-sialoglycoprotein e 84.1 4.9 0.00011 40.2 8.4 58 329-387 239-299 (345)
76 PLN02902 pantothenate kinase 84.0 30 0.00066 38.7 14.9 166 191-399 216-399 (876)
77 TIGR03723 bact_gcp putative gl 83.8 4.5 9.7E-05 40.1 8.0 61 323-387 232-295 (314)
78 PRK00976 hypothetical protein; 83.4 4.9 0.00011 39.8 7.8 67 330-402 244-312 (326)
79 COG3426 Butyrate kinase [Energ 81.9 4.8 0.0001 38.7 6.8 59 331-389 272-334 (358)
80 TIGR03722 arch_KAE1 universal 79.4 6.4 0.00014 39.1 7.3 61 323-387 215-278 (322)
81 PTZ00297 pantothenate kinase; 79.2 80 0.0017 38.1 17.2 73 322-398 1363-1443(1452)
82 PRK09605 bifunctional UGMP fam 78.8 7.3 0.00016 41.6 8.1 71 329-400 221-298 (535)
83 COG0533 QRI7 Metal-dependent p 78.0 13 0.00028 36.9 8.7 72 330-403 238-312 (342)
84 PRK03011 butyrate kinase; Prov 74.7 13 0.00028 37.5 8.1 67 331-397 271-343 (358)
85 TIGR00329 gcp_kae1 metallohydr 74.1 8.4 0.00018 37.9 6.5 60 323-386 231-293 (305)
86 COG4972 PilM Tfp pilus assembl 72.0 19 0.00042 35.5 8.1 59 329-387 260-320 (354)
87 KOG1794 N-Acetylglucosamine ki 70.0 15 0.00032 35.7 6.6 76 330-405 237-320 (336)
88 KOG0102 Molecular chaperones m 68.9 4.5 9.8E-05 42.3 3.2 70 339-408 335-408 (640)
89 KOG0104 Molecular chaperones G 68.4 13 0.00027 40.6 6.5 81 321-404 331-416 (902)
90 KOG1369 Hexokinase [Carbohydra 66.9 22 0.00048 37.1 7.7 76 329-404 379-469 (474)
91 COG2971 Predicted N-acetylgluc 64.3 1.5E+02 0.0032 29.1 13.9 68 331-404 226-294 (301)
92 PRK14101 bifunctional glucokin 63.9 33 0.00071 37.6 9.0 50 355-404 270-333 (638)
93 PRK09557 fructokinase; Reviewe 63.4 33 0.00072 33.5 8.2 67 332-399 223-299 (301)
94 PF02601 Exonuc_VII_L: Exonucl 62.4 36 0.00078 33.6 8.3 32 353-384 74-112 (319)
95 COG0068 HypF Hydrogenase matur 62.1 34 0.00074 37.3 8.2 75 321-399 664-745 (750)
96 PTZ00107 hexokinase; Provision 60.2 58 0.0012 34.2 9.5 81 322-403 366-461 (464)
97 COG0849 ftsA Cell division ATP 59.7 29 0.00062 35.8 7.1 67 321-387 287-353 (418)
98 PF03727 Hexokinase_2: Hexokin 59.7 11 0.00023 35.9 3.7 81 322-403 143-242 (243)
99 PLN02914 hexokinase 56.7 68 0.0015 33.9 9.3 82 321-403 385-488 (490)
100 PRK13310 N-acetyl-D-glucosamin 54.7 61 0.0013 31.6 8.4 53 139-208 88-142 (303)
101 PLN02405 hexokinase 52.0 76 0.0017 33.6 8.9 75 329-403 394-490 (497)
102 TIGR00016 ackA acetate kinase. 49.8 64 0.0014 33.1 7.6 48 331-378 303-352 (404)
103 COG5012 Predicted cobalamin bi 49.6 29 0.00063 32.3 4.7 47 333-379 164-211 (227)
104 PRK05082 N-acetylmannosamine k 49.1 76 0.0016 30.7 8.0 67 332-399 212-286 (291)
105 PRK00180 acetate kinase A/prop 48.5 67 0.0015 33.0 7.6 48 331-378 299-348 (402)
106 PRK12408 glucokinase; Provisio 47.3 49 0.0011 33.0 6.4 65 330-399 252-331 (336)
107 PRK13917 plasmid segregation p 47.1 69 0.0015 32.1 7.4 45 353-400 290-335 (344)
108 COG4820 EutJ Ethanolamine util 47.1 53 0.0012 30.2 5.8 65 330-399 207-272 (277)
109 PF01968 Hydantoinase_A: Hydan 45.6 27 0.0006 34.1 4.2 67 331-397 214-283 (290)
110 TIGR00744 ROK_glcA_fam ROK fam 41.8 88 0.0019 30.6 7.3 69 331-400 229-309 (318)
111 PLN02596 hexokinase-like 41.7 62 0.0013 34.2 6.3 88 315-404 382-486 (490)
112 PRK07058 acetate kinase; Provi 40.7 1E+02 0.0022 31.5 7.4 47 331-378 295-343 (396)
113 KOG2707 Predicted metalloprote 40.7 82 0.0018 31.5 6.4 72 332-404 279-357 (405)
114 COG1077 MreB Actin-like ATPase 40.5 41 0.00088 33.3 4.3 59 330-388 256-317 (342)
115 PF06757 Ins_allergen_rp: Inse 40.1 1.3E+02 0.0028 27.0 7.4 81 340-450 58-141 (179)
116 PRK00292 glk glucokinase; Prov 39.9 69 0.0015 31.5 6.1 64 332-400 236-314 (316)
117 COG2012 RPB5 DNA-directed RNA 39.8 26 0.00056 26.8 2.2 33 105-153 27-59 (80)
118 PRK09698 D-allose kinase; Prov 38.6 1.4E+02 0.0029 29.0 8.0 66 330-400 217-295 (302)
119 PRK07157 acetate kinase; Provi 33.3 1.6E+02 0.0035 30.1 7.5 47 332-378 297-345 (400)
120 PTZ00288 glucokinase 1; Provis 33.2 1.7E+02 0.0037 30.1 7.8 50 353-402 322-391 (405)
121 PF01191 RNA_pol_Rpb5_C: RNA p 32.2 46 0.001 25.3 2.6 35 104-154 20-54 (74)
122 cd07207 Pat_ExoU_VipD_like Exo 31.7 33 0.00071 30.9 2.2 48 357-405 1-48 (194)
123 PRK12440 acetate kinase; Revie 31.6 1.8E+02 0.004 29.7 7.6 47 331-378 297-345 (397)
124 PRK09570 rpoH DNA-directed RNA 31.6 43 0.00093 25.9 2.4 35 105-155 24-58 (79)
125 COG2433 Uncharacterized conser 31.6 1.7E+02 0.0036 31.5 7.4 65 342-408 67-132 (652)
126 COG1940 NagC Transcriptional r 31.3 1.8E+02 0.004 28.3 7.6 55 139-210 98-154 (314)
127 TIGR02707 butyr_kinase butyrat 31.0 2.5E+02 0.0055 28.2 8.5 57 331-387 269-328 (351)
128 PF00871 Acetate_kinase: Aceto 29.9 53 0.0012 33.6 3.5 55 331-385 296-353 (388)
129 TIGR03492 conserved hypothetic 29.6 1.6E+02 0.0034 30.2 6.9 57 329-390 68-124 (396)
130 COG5350 Predicted protein tyro 29.6 1.5E+02 0.0033 26.0 5.6 50 400-451 115-164 (172)
131 PRK12379 propionate/acetate ki 29.5 2.4E+02 0.0051 29.0 8.0 45 332-377 295-341 (396)
132 PF00814 Peptidase_M22: Glycop 29.4 1.2E+02 0.0027 29.1 5.8 34 353-386 220-255 (268)
133 TIGR00237 xseA exodeoxyribonuc 28.9 2.3E+02 0.005 29.4 8.0 30 355-384 188-224 (432)
134 KOG3530 FERM domain protein EH 28.5 86 0.0019 33.4 4.7 77 363-446 101-177 (616)
135 TIGR00749 glk glucokinase, pro 28.4 66 0.0014 31.7 3.9 62 330-396 240-316 (316)
136 PLN02362 hexokinase 28.4 4E+02 0.0088 28.3 9.8 48 357-404 444-500 (509)
137 PRK00286 xseA exodeoxyribonucl 27.8 2.1E+02 0.0045 29.7 7.6 30 355-384 193-229 (438)
138 PF07592 DDE_Tnp_ISAZ013: Rhod 27.8 2.5E+02 0.0055 27.7 7.5 76 306-391 142-226 (311)
139 PRK12397 propionate kinase; Re 26.2 2.8E+02 0.0061 28.5 7.8 47 331-377 298-345 (404)
140 cd00012 ACTIN Actin; An ubiqui 25.3 28 0.00061 35.1 0.6 47 355-401 290-347 (371)
141 PRK13328 pantothenate kinase; 25.1 4.4E+02 0.0096 25.1 8.7 63 330-400 190-252 (255)
142 PRK13329 pantothenate kinase; 25.0 4.7E+02 0.01 24.8 8.8 63 330-401 183-246 (249)
143 COG1058 CinA Predicted nucleot 24.5 98 0.0021 29.6 4.0 30 355-384 61-92 (255)
144 PF06406 StbA: StbA protein; 24.4 3.1E+02 0.0067 27.0 7.8 39 354-394 272-314 (318)
145 PRK13326 pantothenate kinase; 24.2 3.7E+02 0.0081 25.8 8.0 61 330-399 192-253 (262)
146 COG2441 Predicted butyrate kin 24.2 2.3E+02 0.0049 27.6 6.2 77 329-411 253-343 (374)
147 PF15249 GLTSCR1: Glioma tumor 23.7 2.9E+02 0.0062 22.6 6.2 21 405-425 20-40 (109)
148 KOG2201 Pantothenate kinase Pa 23.3 6.5E+02 0.014 25.2 9.2 57 319-379 273-330 (371)
149 TIGR03739 PRTRC_D PRTRC system 22.4 2.9E+02 0.0063 27.2 7.2 45 352-398 271-317 (320)
150 cd07212 Pat_PNPLA9 Patatin-lik 21.3 1.5E+02 0.0033 29.2 4.8 57 358-416 2-62 (312)
151 COG5493 Uncharacterized conser 21.2 2.6E+02 0.0057 25.5 5.7 61 314-386 166-229 (231)
152 PF00591 Glycos_transf_3: Glyc 20.9 1.9E+02 0.0041 27.4 5.3 69 357-425 5-79 (252)
153 PLN02666 5-oxoprolinase 20.5 3.9E+02 0.0084 32.0 8.5 65 332-398 462-531 (1275)
154 COG3621 Patatin [General funct 20.1 2.7E+02 0.0059 27.8 6.0 55 354-408 8-66 (394)
No 1
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=2.2e-78 Score=639.89 Aligned_cols=425 Identities=44% Similarity=0.750 Sum_probs=352.5
Q ss_pred CCchhHHHHHHHHccCchHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccccc
Q 012530 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWT 80 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~ 80 (461)
+|+|+.+++++|++..++++++||+++++.++++||+|+++|+||+|+|+.+|++++|||.|||||+..++.
T Consensus 107 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~d~-------- 178 (541)
T TIGR01315 107 MDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFFDLTDFLTWRATGKEIRSF-------- 178 (541)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhcchhhhheeeeecchhHhH--------
Confidence 699999999999865457899999999999999999999999999999999999999999999999976543
Q ss_pred ccccccccccccccccc---cccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCc-cCHHHHHHcCCCCCCcEe
Q 012530 81 YLGHAHMQQMNEKGFRD---MEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSG-LTPAAAKELGLVPGTPVG 156 (461)
Q Consensus 81 ~~~~~~~s~as~t~l~d---~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~-v~~~~A~~~GL~~g~pV~ 156 (461)
++++.+++|| +++++||+++++.+||+....++||++.|+++.+++++| + |++++|+++||++||||+
T Consensus 179 -------~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G-~~v~~~~A~~~GL~~g~pV~ 250 (541)
T TIGR01315 179 -------CSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVG-GGLTAEAAQELGLPAGTAVG 250 (541)
T ss_pred -------hHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcccc-cccCHHHHHHhCCCCCCeEe
Confidence 3455667777 799999999999999995211124444456788999998 6 999999999999999999
Q ss_pred echhhhhhhccCccc--ccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccc
Q 012530 157 TSLIDAHAGGVGVME--SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 234 (461)
Q Consensus 157 ~g~~D~~aa~~g~~~--~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (461)
+|++|++|+++|+++ ..++ +.....++++.+++|||+++..+.+++..++..+.++.++..++.|++++++
T Consensus 251 ~g~~D~~aa~lG~g~~~~~~~-------g~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
T TIGR01315 251 SGLIDAHAGWIGTVGAKVAEN-------GDVSQAFTRLAAVAGTSTCHMAMTKGPVFVPGVWGPYRDALIPGYWLAEGGQ 323 (541)
T ss_pred echHhhhcccccccccccccc-------ccccCCCCcEEEEecCceEEEEecCCCccCCceeecccCccCCCceEEecCc
Confidence 999999999999844 2320 0000001388999999999888887776666554433245668899999999
Q ss_pred cchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCC--cccCCCCCeEEccCCCCCCCCCCCCCCce
Q 012530 235 SATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP--FVAALTEDIHVLPDFHGNRSPIADPKSKG 312 (461)
Q Consensus 235 ~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p--~~~~g~~gl~f~P~l~Ger~P~~d~~a~g 312 (461)
+++|.+++||++++...++........+.+.|+.|++.+++++.. .| .++++++|++|+|||.|+|+|+|||++||
T Consensus 324 ~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~gl~flP~l~G~r~P~~dp~arG 401 (541)
T TIGR01315 324 SAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAK--TNAPSISYLVRHFHVYPDLWGNRSPIADPNMRG 401 (541)
T ss_pred cchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhh--cccCccccCCCceEEccccccCcCCCCCCCCce
Confidence 999999999999874222211111122235688887766554432 11 00023589999999999999999999999
Q ss_pred eEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchh
Q 012530 313 IICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVL 392 (461)
Q Consensus 313 ~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~a 392 (461)
+|+||+.+|++.++++++||++|||||++|++++.|++.|.++++|+++||++||++|+||+|||+|+||++++..|+++
T Consensus 402 ~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a 481 (541)
T TIGR01315 402 VIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVL 481 (541)
T ss_pred EEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHH
Confidence 99999999999777778999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhH-HHHHHHHHHHHHHHHHHHHH
Q 012530 393 LGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK-KYHDAKYLIFRELFEQQVSQ 452 (461)
Q Consensus 393 lGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~-~~y~~~y~~y~~l~~~~~~~ 452 (461)
+|||++|++++|.|+|++++.+.+++..++|+| +++++ +.|+++|++|+++|++++.+
T Consensus 482 lGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~~Y~~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 482 HGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWP--RGDPAKKLHDRKYEIFLQLARTQQEY 540 (541)
T ss_pred HHHHHHHHHhcCccCCHHHHHHHhccCCcEEcC--CcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988888888899999 99999 99999999999999998876
No 2
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=1.2e-75 Score=615.68 Aligned_cols=402 Identities=19% Similarity=0.296 Sum_probs=353.3
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++.+.. ++++++||+++++.++++||+|+++|+|++|+|+++|++++|||.|+|||+..+
T Consensus 98 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~l~~~dyl~~~LTG~~~~-------- 169 (505)
T TIGR01314 98 ADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAAKYLEIKGYIFQRLFGTYKI-------- 169 (505)
T ss_pred cccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhcEEECHHHHHHHHHcCCcee--------
Confidence 5999999999998875 679999999999999999999999999999999999999999999999998754
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeec
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTS 158 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g 158 (461)
|+|+||+|++||+++++|++++++.+||++. +||+ ++.+++++| +|++++|+++||++||||++|
T Consensus 170 -------d~s~As~t~l~d~~~~~W~~ell~~~gi~~~---~lP~----l~~~g~~iG-~l~~~~a~~~GL~~g~pV~~g 234 (505)
T TIGR01314 170 -------DYSTASATGMFNLFELDWDKEALELTGIKES---QLPK----LVPTTEIEE-NLPHEYAKKMGIQSSTPFVIG 234 (505)
T ss_pred -------EhhhhhhhcceeCCCCCCCHHHHHhcCCCHH---HCCC----CcCcccccC-CcCHHHHHHhCCCCCCeEEEe
Confidence 4578899999999999999999999999975 3575 678899999 499999999999999999999
Q ss_pred hhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccc-cCCeeEecccccch
Q 012530 159 LIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAM-VPKFWLTEGGQSAT 237 (461)
Q Consensus 159 ~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (461)
++|++|+++|+ |... +|++++++|||+++..++++|..++.... +++. .++.|+.+++++++
T Consensus 235 ~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 297 (505)
T TIGR01314 235 ASDGVLSNLGV-NAIK--------------KGEAAVTIGTSGAIRTVIDKPKTDEKGRI--FCYALTKEHWVIGGPVNNG 297 (505)
T ss_pred ccHHHHHHhcC-CCCC--------------CCcEEEEechhheeeeccCcCccCCCCce--EEEEecCCcEEEEeeecch
Confidence 99999999999 5443 48999999999998888887765543321 2232 34779999999999
Q ss_pred hHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcC
Q 012530 238 GALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGM 317 (461)
Q Consensus 238 G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl 317 (461)
|.+++||++.+... ....+...+.+.|+.|++++++. | ++++|++|+|||.|+|+|+||+++||+|+|+
T Consensus 298 g~~~~W~~~~~~~~--~~~~~~~~~~~~y~~l~~~a~~~------~---~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl 366 (505)
T TIGR01314 298 GDVLRWARDEIFDS--EIETATRLGIDPYDVLTEIAARV------S---PGADGLLFHPYLAGERAPLWNANARGSFFGL 366 (505)
T ss_pred HhHHHHHHHHhhhh--hhhhhhhcCCCHHHHHHHHHhhC------C---CCCCceEEecccccCCCCCCCCCccEEEECC
Confidence 99999999987531 11112223456799998877653 2 5788999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHH
Q 012530 318 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAA 396 (461)
Q Consensus 318 ~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA 396 (461)
+..|++.| ++||++|||||.++++++.+.+ .|.++++|+++||++||++|+||+|||+|+||++++..|++++|||
T Consensus 367 ~~~~~~~~---l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~e~~a~GaA 443 (505)
T TIGR01314 367 TYSHKKEH---MIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESYESSCLGAC 443 (505)
T ss_pred CCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCCCcchHHHH
Confidence 99999999 5679999999999999999977 5778899999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012530 397 ILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQA 459 (461)
Q Consensus 397 ~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~~~~~ 459 (461)
++|++++|.++|++++ ..+.+..++|+| ++++++.|+++|++|+++|+++++.+..+.+.
T Consensus 444 ~la~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~~~~~~~~~~~~~~~~ 503 (505)
T TIGR01314 444 ILGLKALGLIEDFSEV-STMVGTTETHTP--IEKNFEIYREISPIFINLSRSLLAEYEQIADF 503 (505)
T ss_pred HHHHHhcCccCCHHHH-HHhcCCCceECc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999986 678888899999 99999999999999999999999998877653
No 3
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=1.5e-74 Score=604.36 Aligned_cols=386 Identities=25% Similarity=0.321 Sum_probs=336.7
Q ss_pred CCchhHHHHHHHHccCchHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccccc
Q 012530 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWT 80 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~ 80 (461)
+|+|+.++++++.+....++++||+++++.++++||+|+++|+||+|+|+++|++++|||.|+|||+..+
T Consensus 97 ~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~~---------- 166 (484)
T PRK15027 97 NDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFAS---------- 166 (484)
T ss_pred cCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhhcChHHHHHhhhcCCccc----------
Confidence 5999999999998876567889999999999999999999999999999999999999999999999754
Q ss_pred ccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeechh
Q 012530 81 YLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLI 160 (461)
Q Consensus 81 ~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g~~ 160 (461)
|.|+||++++||+++++||+++++.+||+.. +||+ ++.+++++| +|++++|+++||+ +|||++|++
T Consensus 167 -----d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~---~lP~----v~~~~~~~G-~l~~~~a~~~GL~-~~pV~~g~~ 232 (484)
T PRK15027 167 -----DMSDAAGTMWLDVAKRDWSDVMLQACHLSRD---QMPA----LYEGSEITG-ALLPEVAKAWGMA-TVPVVAGGG 232 (484)
T ss_pred -----cHHHhhcccccccccCCCcHHHHHHhCCCHH---HCCC----CCCCccccc-cccHHHHHHhCCC-CCeEEeccc
Confidence 3567889999999999999999999999975 4575 578899999 5999999999997 699999999
Q ss_pred hhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchhHH
Q 012530 161 DAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL 240 (461)
Q Consensus 161 D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 240 (461)
|++|+++|+ |..+ +|++.+++|||+++..+++++..++......+++..|+.|++++.+.++|.+
T Consensus 233 D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 297 (484)
T PRK15027 233 DNAAGAVGV-GMVD--------------ANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASC 297 (484)
T ss_pred HHHHHHhcc-Cccc--------------CCcEEEEecCceEEEEecCCcccCchhceeecceecCCceEEEEEehhhHHH
Confidence 999999999 5543 4899999999999888888765544322222345678899999999999999
Q ss_pred HHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcCCCC
Q 012530 241 LDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLD 320 (461)
Q Consensus 241 l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl~~~ 320 (461)
++|+++.+.. +.|+.+.+.+++. | |+++|++|+|||.|+|+|+||+++||+|+|++.+
T Consensus 298 ~~W~~~~~~~-------------~~~~~~~~~a~~~------~---~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~ 355 (484)
T PRK15027 298 LDWAAKLTGL-------------SNVPALIAAAQQA------D---ESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQ 355 (484)
T ss_pred HHHHHHHhCC-------------ccHHHHHHHHhhC------C---CCCCceEEecccccCCCcCCCCCcceEEECCCCC
Confidence 9999997642 2244554444332 3 6889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC-CCchhHHHHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILG 399 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~alGaA~lA 399 (461)
|++.| ++||++|||||.++++++.+++.|.++++|+++||++||++|+||+||++|+||++... .+++++|||++|
T Consensus 356 ~~~~~---l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA 432 (484)
T PRK15027 356 HGPNE---LARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_pred CCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHH
Confidence 99999 57799999999999999999988888999999999999999999999999999976654 458899999999
Q ss_pred HHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012530 400 AVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQR 453 (461)
Q Consensus 400 ~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~ 453 (461)
++++|.++|++++. ++.+..++|+| |+++++.|+++|++|+++|+++++.+
T Consensus 433 ~~~~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~~Y~~~~~~y~~~y~~~~~~~ 483 (484)
T PRK15027 433 QIAANPEKSLIELL-PQLPLEQSHLP--DAQRYAAYQPRRETFRRLYQQLLPLM 483 (484)
T ss_pred HHhcCCcCCHHHHH-hhcCCCceECC--CHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999875 55578899999 99999999999999999999987654
No 4
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=1.6e-71 Score=589.95 Aligned_cols=400 Identities=30% Similarity=0.465 Sum_probs=340.1
Q ss_pred CCchhHHHHHHHHccC----chHHhhh-CCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCccccc
Q 012530 1 MDHRAVKQAEKINSRN----SPVLQYC-GGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTT 75 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~----~~~~~~t-G~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~ 75 (461)
+|+|+.+++++|++.. +++++++ |+++.+.++++||+||++|+||+|+|+++|++++|||.|+|||+...+...
T Consensus 120 ~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~- 198 (548)
T PRK04123 120 KDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILHVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIV- 198 (548)
T ss_pred ccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHHHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCccccc-
Confidence 6999999999998764 3577654 999999999999999999999999999999999999999999976422211
Q ss_pred cccccccccccccccccccccccc-cCCCCHHHHHHcC------CCccccccccccCccccCCCCcccCccCHHHHHHcC
Q 012530 76 VCKWTYLGHAHMQQMNEKGFRDME-ACGWDDEFWEEIG------LGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELG 148 (461)
Q Consensus 76 ~~~~~~~~~~~~s~as~t~l~d~~-~~~W~~~ll~~~g------i~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~G 148 (461)
++.++++.+++||.+ ++.||+++|+.+| |+..+ ||+ ++.+++++| .|++++|+++|
T Consensus 199 ---------~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~~l---lP~----l~~~g~~~G-~v~~~~a~~~G 261 (548)
T PRK04123 199 ---------RSRCAAGHKALWHESWGGLPSADFFDALDPLLARGLRDKL---FTE----TWTAGEPAG-TLTAEWAQRLG 261 (548)
T ss_pred ---------cchhhcccccccccccCCCCCHHHHHHhccchhhhhHhhc---CCc----cccCCCccc-ccCHHHHHHhC
Confidence 246778889999998 5666999999997 76542 454 678899999 49999999999
Q ss_pred CCCCCcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCee
Q 012530 149 LVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFW 228 (461)
Q Consensus 149 L~~g~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (461)
|++|+||++|+||++|+++|+ |. . +|++++++|||+++..+++++...+..+..+..+..++.|
T Consensus 262 L~~g~pV~~g~~D~~aa~~G~-g~-~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (548)
T PRK04123 262 LPEGVAVSVGAFDAHMGAVGA-GA-E--------------PGTLVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLI 325 (548)
T ss_pred CCCCCeEEecchhhhhhhccc-Cc-C--------------CCcEEEEecCceEEEEecCCccccCceeecccCcccCCee
Confidence 999999999999999999999 54 3 3789999999999888887664333332222223557889
Q ss_pred EecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCC
Q 012530 229 LTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 308 (461)
Q Consensus 229 ~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~ 308 (461)
.++++++++|.+++||++.+... +.....++.+.+.|+.|++++++. | |+++|++|+|||.|+|+|+|||
T Consensus 326 ~~~~~~~~~G~~l~W~~~~~~~~-~~~~~~~~~~~~~~~~l~~~a~~~------~---~g~~gl~f~P~l~Ger~P~~~~ 395 (548)
T PRK04123 326 GYEAGQSAVGDIFAWFARLLVPP-EYKDEAEARGKQLLELLTEAAAKQ------P---PGEHGLVALDWFNGRRTPLADQ 395 (548)
T ss_pred eecccccchHHHHHHHHHhcchH-hHHHHHHhcCCcHHHHHHHHHHhc------C---CCCCceEEcccccCCCCCCCCC
Confidence 99999999999999999988421 111122223346789888877653 2 6789999999999999999999
Q ss_pred CCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccC-CCCHHHHHHHHhhhCCceeecCC
Q 012530 309 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 309 ~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
++||+|+|++.+|++.| ++|||+|||||+++++++.|++.|.++++|+++||+ +||++|+||+||++|+||++++.
T Consensus 396 ~arg~~~Gl~~~~~~~~---l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~ 472 (548)
T PRK04123 396 RLKGVITGLTLGTDAPD---IYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVAS 472 (548)
T ss_pred CCceEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCc
Confidence 99999999999999999 578999999999999999999888888999999999 99999999999999999999999
Q ss_pred CCchhHHHHHHHHHhccccCCHHHHHHHhh-cCCeEEcCCCChhhHHHHHHHHHHHHHHHHHH
Q 012530 388 NESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQ 449 (461)
Q Consensus 388 ~e~~alGaA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~ 449 (461)
.|++++|||++|++++|.|+|++++.+.+. ...++|+| ++++++.|+++|++|+++|+.+
T Consensus 473 ~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P--~~~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 473 DQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQP--DPENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred cccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEec--CHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999877776 55678999 9999999999999999999888
No 5
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=1.3e-71 Score=588.50 Aligned_cols=404 Identities=30% Similarity=0.433 Sum_probs=339.2
Q ss_pred CCchhHHHHHHHHccC----chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccc
Q 012530 1 MDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTV 76 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~ 76 (461)
+|+|+.+++++|++.. ++++++||+++++.++++||+||++|+||+|+|+.+|++++|||.|+|||+...+.
T Consensus 123 ~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~d~---- 198 (536)
T TIGR01234 123 KHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAKILQITEEDPAIYQAADRWIELADWIVAQLSGDIRRGR---- 198 (536)
T ss_pred ccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHHHHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCccccc----
Confidence 5999999999998763 56889999999999999999999999999999999999999999999999976543
Q ss_pred ccccccccccccccccccccccccCCCCHHHHHHcCCCcccccccc-ccCccccCCCCcccCccCHHHHHHcCCCCCCcE
Q 012530 77 CKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA-KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 155 (461)
Q Consensus 77 ~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp-~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV 155 (461)
+.++.++++|...+.||+++++.+|+... +.+| .+.|+++.+++++| .|++++|+++||++|+||
T Consensus 199 -----------s~a~~~~l~~~~w~~~~~~~l~~~g~~~~--~~lp~~~~p~i~~~g~~~G-~v~~~~A~~~GL~~g~pV 264 (536)
T TIGR01234 199 -----------CTAGYKALWHESWGYPSASFFDELNPILN--RHLPDKLFTDIWTAGEPAG-TLTPEWAQRTGLPEGVVV 264 (536)
T ss_pred -----------hhcccceeccccccCCCHHHHHHhcchhh--hhhhhhcCCceecCCCccc-ccCHHHHHHhCCCCCCeE
Confidence 45566777666555569999999996210 0011 22335788999999 599999999999999999
Q ss_pred eechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEeccccc
Q 012530 156 GTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQS 235 (461)
Q Consensus 156 ~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (461)
++|++|++|+++|+ |... +|++++++|||+++..+.+++...+..+..+..+..++.|.++++++
T Consensus 265 ~~g~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (536)
T TIGR01234 265 AVGNFDAHVGAVAA-GIAQ--------------PGALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQS 329 (536)
T ss_pred EecchhHhhhhhcc-cccc--------------CCcEEEEEccceEEEEecCccccCCceeeeccCcccCCeeEEecccc
Confidence 99999999999999 5443 48999999999998777765544333221121224568899999999
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEE
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 315 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~ 315 (461)
++|.+++||+++|... +........+.+.|+.|++.+++. | |+++|++|+|||.|||+|+||+++||+|+
T Consensus 330 ~~G~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~l~~~a~~~------p---~g~~gllflP~l~Ger~P~~d~~arG~~~ 399 (536)
T TIGR01234 330 AVGDIFAWFGKVCVPP-ELKTEANASQKQLHEALSEAAAKQ------P---SGEHGLVALDWFNGNRSPLVDQRLKGVIT 399 (536)
T ss_pred chHHHHHHHHHHhcch-HHHHHHHhcCCCHHHHHHHHHHhC------C---CCCCCeEecchhccCCCCCCCCcceEEEE
Confidence 9999999999987432 221222222345688888876643 2 68899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccC-CCCHHHHHHHHhhhCCceeecCCCCchhHH
Q 012530 316 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLG 394 (461)
Q Consensus 316 Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~g~pV~~~~~~e~~alG 394 (461)
|++.+|++.| ++|||+|||||++|++++.|++.|.++++|+++||+ ++|++||||+||++|+||++++..|++++|
T Consensus 400 Gl~~~~~~~~---~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~G 476 (536)
T TIGR01234 400 GLTLATDAPL---LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALG 476 (536)
T ss_pred CCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHH
Confidence 9999999999 578999999999999999999888889999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCHHHHHHHhh-cCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012530 395 AAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ 452 (461)
Q Consensus 395 aA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~ 452 (461)
||++|++++|.+++++++.+.+. ...++|+| ++++++.|+++|++|+++|+.+..|
T Consensus 477 aA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P--~~~~~~~y~~~y~~y~~l~~~~~~~ 533 (536)
T TIGR01234 477 AAIFAAVAAGVYADIPSAQAKMGSAVEKTLTP--CSENAQRYEQLYARYQELAMSFGQY 533 (536)
T ss_pred HHHHHHHHcCCcCCHHHHHHHhhccCCceECC--ChhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999877776 56889999 9999999999999999999988765
No 6
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=6.8e-72 Score=586.28 Aligned_cols=381 Identities=19% Similarity=0.276 Sum_probs=324.5
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccc----eeeechhhhhhhhcCC--CCCcc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF----RWMDLSDWLSYRATGD--DTRSL 72 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~----~~l~~~dyl~~~LTG~--~~~~~ 72 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+||++|+||+|+++. ++++++|||.|+|||. .++
T Consensus 105 ~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~-- 182 (498)
T PRK00047 105 QDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKLTGGKVHVT-- 182 (498)
T ss_pred cccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHHHHhcCCeEEeChHHhHhhhhcCCCeeEe--
Confidence 6999999999998764 45999999999999999999999999999977764 4888999999999975 433
Q ss_pred ccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCC
Q 012530 73 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPG 152 (461)
Q Consensus 73 ~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g 152 (461)
|.|+||+|++||+++++||+++++.+||++. +||+ ++.+++++| .|+++ +|+.+|
T Consensus 183 -------------d~s~As~t~l~d~~~~~W~~ell~~~gi~~~---~lP~----i~~~g~~~G-~v~~~----~~l~~g 237 (498)
T PRK00047 183 -------------DYTNASRTMLFNIHTLDWDDELLELLDIPRS---MLPE----VRPSSEVYG-KTNPY----GFFGGE 237 (498)
T ss_pred -------------echHHhhhhccccccCccCHHHHHhcCCCHH---HCCC----ccCCccccc-ccccc----ccCCCC
Confidence 4678999999999999999999999999975 3575 578899999 49987 677799
Q ss_pred CcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeec-cCccccCCccccccccccCC--eeE
Q 012530 153 TPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS-RNKLFIPGVWGPFWSAMVPK--FWL 229 (461)
Q Consensus 153 ~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 229 (461)
|||++|++|++|+++|+ |... +|++.+++|||+++...+ ++|..++......+++..++ .|+
T Consensus 238 ~pV~~g~~D~~aa~~G~-G~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (498)
T PRK00047 238 VPIAGIAGDQQAALFGQ-LCFE--------------PGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYA 302 (498)
T ss_pred ceEEEEccHHHHHHHhC-cCCC--------------CCceEEeeccceEEEEecCCccccCCCCceeEEEEEcCCCcEEE
Confidence 99999999999999999 5443 389999999999866665 45655443211112223344 699
Q ss_pred ecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCC
Q 012530 230 TEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 309 (461)
Q Consensus 230 ~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~ 309 (461)
++++++++|.+++||+++|... ..++.+++.++.. |+++|++|+|||.|+|+|+||++
T Consensus 303 ~~g~~~~~g~~l~W~~~~~~~~------------~~~~~~~~~a~~~----------~~~~gl~~lP~l~G~r~P~~d~~ 360 (498)
T PRK00047 303 LEGSIFVAGSAIQWLRDGLKII------------SDASDSEALARKV----------EDNDGVYVVPAFTGLGAPYWDSD 360 (498)
T ss_pred EEeeHhhHHHHHHHHHHHhcCC------------CCHHHHHHHHhcC----------CCCCCEEEeCccccCCCCCCCCC
Confidence 9999999999999999987421 1133444443321 36789999999999999999999
Q ss_pred CceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCC
Q 012530 310 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN 388 (461)
Q Consensus 310 a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~ 388 (461)
+||+|+|++.+|++.| ++||++|||||.+|++++.|++ .|.++++|+++||++||++|+||+|||+|+||++++..
T Consensus 361 arg~~~Gl~~~~~~~~---l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~ 437 (498)
T PRK00047 361 ARGAIFGLTRGTTKEH---IIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPVVA 437 (498)
T ss_pred CcEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecCcc
Confidence 9999999999999999 5779999999999999999986 48889999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012530 389 ESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ 452 (461)
Q Consensus 389 e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~ 452 (461)
|++++|||++|++++|.|++++++ ..+.+..++|+| ++++++ |+++|++|+++|+++..|
T Consensus 438 e~~a~GaA~~A~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~-y~~~~~~~~~~~~~~~~~ 497 (498)
T PRK00047 438 ETTALGAAYLAGLAVGFWKDLDEL-KEQWKIDRRFEP--QMDEEE-REKLYAGWKKAVKRTLAW 497 (498)
T ss_pred cchHHHHHHHHhhhcCcCCCHHHH-HhhcCCCeEECC--CCCHHH-HHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999987 677788899999 989887 999999999999988765
No 7
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=9.1e-72 Score=587.93 Aligned_cols=397 Identities=22% Similarity=0.296 Sum_probs=341.4
Q ss_pred CCchhHHHHHHHHccC----chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccc
Q 012530 1 MDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTV 76 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~ 76 (461)
+|+|+.+++++|++.. ++++++||+++ +.++++||+|+++|+||+|+|+.+|++++|||.|+|||+..+
T Consensus 103 ~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~------ 175 (520)
T PRK10939 103 VDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDIYRQAHTITMISDWIAYMLSGELAV------ 175 (520)
T ss_pred CCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHHHHHhheEechhHhhhheeeCceee------
Confidence 4999999999998754 46889999875 678999999999999999999999999999999999999754
Q ss_pred ccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEe
Q 012530 77 CKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVG 156 (461)
Q Consensus 77 ~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~ 156 (461)
|+|+||+|++||+++++|++++++.+||++. +||+ ++.+++++| .|++++|+.+||++|+||+
T Consensus 176 ---------d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~---~lP~----i~~~g~~~G-~v~~~~A~~~GL~~g~pV~ 238 (520)
T PRK10939 176 ---------DPSNAGTTGLLDLVTRDWDPALLEMAGLRAD---ILPP----VKETGTVLG-HVTAKAAAETGLRAGTPVV 238 (520)
T ss_pred ---------EhhhhhceeeeecCCCCCCHHHHHHcCCCHH---HCCC----CccCCceee-eecHHHHHhhCCCCCCcEE
Confidence 4578899999999999999999999999975 3565 578899999 5999999999999999999
Q ss_pred echhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccc
Q 012530 157 TSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSA 236 (461)
Q Consensus 157 ~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (461)
+|++|++|+++|+ |... +|++++++|||.++...++++..++........+..++.|.+++.+++
T Consensus 239 ~g~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (520)
T PRK10939 239 MGGGDVQLGCLGL-GVVR--------------PGQTAVLGGTFWQQVVNLPAPVTDPNMNIRINPHVIPGMVQAESISFF 303 (520)
T ss_pred EeCchHHHHHhhc-Cccc--------------CCcEEEeecCcceeEEeccccccCccccceeceeeeCCcceEeeeecc
Confidence 9999999999998 5543 378999999999877777666555432221234567889999999999
Q ss_pred hhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEc
Q 012530 237 TGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICG 316 (461)
Q Consensus 237 ~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~G 316 (461)
+|.+++||+++|...+.. .+...+.+.|+.|++.+++. | |+++|+ +|||.|+|.|.+++++||+|+|
T Consensus 304 ~G~~l~W~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~------~---~g~~gl--~P~l~g~~~~~~~~~~~g~f~G 370 (520)
T PRK10939 304 TGLTMRWFRDAFCAEEKL--LAERLGIDAYSLLEEMASRV------P---VGSHGI--IPIFSDVMRFKSWYHAAPSFIN 370 (520)
T ss_pred ceeeeehHHhhhchHHHH--HHHhcCCCHHHHHHHHHhhC------C---CCCCCC--cccccCCCCCCCCcccceeEEc
Confidence 999999999987543221 12223456799998877653 2 577777 5999999875555689999999
Q ss_pred CCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchh
Q 012530 317 MTLDS---SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVL 392 (461)
Q Consensus 317 l~~~~---~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~a 392 (461)
++.+| ++.| ++||++|||||.+|++++.+++. |.++++|+++||++||++|+||+|||+|+||++++..|+++
T Consensus 371 l~~~~~~~~~~~---~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a 447 (520)
T PRK10939 371 LSIDPEKCNKAT---LFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATA 447 (520)
T ss_pred cccCcccCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchH
Confidence 99987 7888 67899999999999999999874 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 393 LGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRS 454 (461)
Q Consensus 393 lGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~ 454 (461)
+|||++|++++|.|+|++++.+.+.+..++|+| ++++++.|+++|++|+++|+++++++.
T Consensus 448 lGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~y~~y~~l~~~~~~~~~ 507 (520)
T PRK10939 448 LGCAIAAGVGAGIYSSLAETGERLVRWERTFEP--NPENHELYQEAKEKWQAVYADQLGLVD 507 (520)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHcccCceECc--CHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999988888788899999 999999999999999999999887643
No 8
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=6.3e-71 Score=578.12 Aligned_cols=382 Identities=26% Similarity=0.405 Sum_probs=340.3
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|.|+.++++++++.. +.+++.+|+...+.++++||+|+++|+||+|+++.+|++++|||.|+|||+..+
T Consensus 97 ~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~yi~~~LtG~~~~-------- 168 (481)
T TIGR01312 97 NDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKVMLPKDYLRYRLTGEYVT-------- 168 (481)
T ss_pred hccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhheeeCchHHHhhhhcCCeee--------
Confidence 4899999999998765 678899999999999999999999999999999999999999999999998753
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeec
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTS 158 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g 158 (461)
|.|+|++|++||+++++|++++|+.+||++. +||+ ++.+++++| +|++++|+++||++|+||++|
T Consensus 169 -------d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~---~Lp~----iv~~~~~~G-~v~~~~a~~~Gl~~g~pV~~g 233 (481)
T TIGR01312 169 -------EYSDASGTGWFDVAKRAWSKELLDALDLPES---QLPE----LIESSEKAG-TVRPEVAARLGLSAGVPVAAG 233 (481)
T ss_pred -------eHHHhhcccccccCCCCCCHHHHHHhCCCHH---HCCC----ccCCCCeee-eEcHHHHHHhCCCCCCeEEec
Confidence 4578899999999999999999999999975 4575 578899999 599999999999999999999
Q ss_pred hhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchh
Q 012530 159 LIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATG 238 (461)
Q Consensus 159 ~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 238 (461)
+||++|+++|+ |... +|++++++|||+++..+++++..++......+++..|+.|+.++++.++|
T Consensus 234 ~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 298 (481)
T TIGR01312 234 GGDNAAGAIGT-GTVD--------------PGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWLPMGVTLSAT 298 (481)
T ss_pred chHHHHHhhCC-Cccc--------------CCcEEEEecCceEEEEecCCcccCcccceeeeeeecCCceEEEeEehhhH
Confidence 99999999999 5442 38999999999998888877766554333334456688899999999999
Q ss_pred HHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcCC
Q 012530 239 ALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMT 318 (461)
Q Consensus 239 ~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl~ 318 (461)
.+++|+++.|.. ..|+.|++.+++. | +++++++|+|||.|+|+|++|+.+||+|+|++
T Consensus 299 ~~~~w~~~~~~~-------------~~~~~l~~~~~~~------~---~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~ 356 (481)
T TIGR01312 299 SSLEWFRELFGK-------------EDVEALNELAEQS------P---PGAEGVTFLPYLNGERTPHLDPQARGSFIGLT 356 (481)
T ss_pred HHHHHHHHHhCC-------------CcHHHHHHHHhcC------C---CCCCCeEEecccccCCCCCCCCCcceEEECCC
Confidence 999999998741 1367777776543 2 57899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHH
Q 012530 319 LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAI 397 (461)
Q Consensus 319 ~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~ 397 (461)
.+|++.| ++||++|||||.+|++++.|++. |.++++|+++||++||++|+||+||++|+||++++..|++++|||+
T Consensus 357 ~~~~~~~---l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~~e~~a~GaA~ 433 (481)
T TIGR01312 357 HNTTRAD---LTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPALGAAI 433 (481)
T ss_pred CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecCCCcchHHHHHH
Confidence 9999999 56799999999999999999985 5788999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHH
Q 012530 398 LGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFE 447 (461)
Q Consensus 398 lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~ 447 (461)
+|++++|.|++++++.+.+.+..++|+| ++++++.|+++|++|+++|+
T Consensus 434 ~a~~~~g~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~~~~~~~~~~ 481 (481)
T TIGR01312 434 LAAWALGEKDLAALCSEAVVKQTESVLP--IAENVEAYEELYERYKKLYQ 481 (481)
T ss_pred HHHHhcCCCCCHHHHHhhccCCCceECC--CHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988888888899999 99999999999999999873
No 9
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=8.4e-71 Score=549.05 Aligned_cols=423 Identities=43% Similarity=0.751 Sum_probs=372.8
Q ss_pred CCchhHHHHHHHHccCchHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccccc
Q 012530 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWT 80 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~ 80 (461)
||+||.+|++++++...+++.+.|..++|.+-.|||+|+++|.|++|+|+.+|+.+.|||.|+|||....+.|+.+|+|+
T Consensus 111 mDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~ 190 (544)
T COG1069 111 MDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAAHIFDLADWLTWKLTGSIARSRCTAGCKWN 190 (544)
T ss_pred ccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChHHHHHhhhhhhHHHHHHHHhhcchhhccccceeeee
Confidence 79999999999999887799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeechh
Q 012530 81 YLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLI 160 (461)
Q Consensus 81 ~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g~~ 160 (461)
|..| +.+.|++++++.+|++...... .+++.+++..|+.+| ++++++|+++||++||.|..|..
T Consensus 191 ~~~~--------------~~~~~~~~~f~~ig~~~l~~~~-~~l~~~i~~~g~~vg-~Lt~e~A~~lGL~~~~~Vs~g~I 254 (544)
T COG1069 191 WLEH--------------EGGLWSADFFDKIGLDDLRELD-SKLPEDIVPAGEPVG-GLTPEAAQELGLPEGTVVSAGII 254 (544)
T ss_pred eecc--------------ccCCCCHHHHHhcCchhhhccc-ccCCcccccCCcccc-ccCHHHHHHhCCCCCcEEeccce
Confidence 8653 4677999999999998643211 456668999999999 49999999999999999999999
Q ss_pred hhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchhHH
Q 012530 161 DAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL 240 (461)
Q Consensus 161 D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 240 (461)
|+.++++|+.+.. ++.+.++.|||+|.+..++++...+++|+++...+.||.|.+||+++++|..
T Consensus 255 DAhag~~Gv~~~~---------------~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l 319 (544)
T COG1069 255 DAHAGAVGVGGAQ---------------PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDL 319 (544)
T ss_pred eccccccccccCC---------------CCeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHH
Confidence 9999999995433 4799999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcCCCC
Q 012530 241 LDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLD 320 (461)
Q Consensus 241 l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl~~~ 320 (461)
++||.+.+....+......+.+.+.|+.+++.++.+...... +.|+.++++++|+|+|+|+|+.||+++|+|+|++++
T Consensus 320 ~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~l~~l~~f~GNRsP~aDp~l~G~i~GltL~ 397 (544)
T COG1069 320 LDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAA--IPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLD 397 (544)
T ss_pred HHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhc--cCcccCCcEecccccCCcCCCCCccceeEEeccccC
Confidence 999999874322221222222345666666655554322111 226899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 400 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~ 400 (461)
|+..+|+.+||+.+|++||..|+++|.+++.|+.+++|+++||..||++|||+.||++|+||+++..+++.++|+||+++
T Consensus 398 T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~~s~~a~llGsAm~~a 477 (544)
T COG1069 398 TSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVTGRPVVIPASDQAVLLGAAMFAA 477 (544)
T ss_pred CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhcCCeEEeecccchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCHHHHHHHhhcCCeEEcCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 401 VAAKRYSSLIEAMKAMNAAGQVIHPSKDP-KVKKYHDAKYLIFRELFEQQVSQRSIMAQ 458 (461)
Q Consensus 401 ~~~G~~~~~~~a~~~~~~~~~~~~P~~~~-~~~~~y~~~y~~y~~l~~~~~~~~~~~~~ 458 (461)
++.|.|+|+..|.++|.+......| ++ +.++.|+++|++|++++....+.+..+.+
T Consensus 478 vAag~~~dl~~A~~aMs~~~~~~~~--~~~~~~~~y~~lyr~y~~l~~~~~~~~~~~~k 534 (544)
T COG1069 478 VAAGVHPDLPAAAQAMSSAVEKTLP--PPPERAARYERLYRRYLQLHDDAEKHYARVMK 534 (544)
T ss_pred HHhccCcchHHHHHHhhcccceecC--ChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 9999999999999999887666666 55 99999999999999999988877765544
No 10
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=1.2e-70 Score=577.31 Aligned_cols=384 Identities=21% Similarity=0.351 Sum_probs=324.9
Q ss_pred CCchhHHHHHHHHccC---chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcC--CCCCc
Q 012530 1 MDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATG--DDTRS 71 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~ 71 (461)
+|+|+.++++++.+.. +.++++||+++++.++++||+||++|+|++|+++++ +++++|||.|+||| +..+
T Consensus 104 ~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~- 182 (504)
T PTZ00294 104 LDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTGGKSHVT- 182 (504)
T ss_pred cchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHHHHhhhcCCeEEEcHHHHHHHHhcCCceEEE-
Confidence 5999999999998765 346699999999999999999999999999996554 99999999999999 6543
Q ss_pred cccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCC
Q 012530 72 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVP 151 (461)
Q Consensus 72 ~~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~ 151 (461)
|+|+||+|++||+++++|++++++.+||+.. +||+ ++.+++++|. |+++ .+|+++
T Consensus 183 --------------d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~---~LP~----v~~~~~~~G~-l~~~---~~~~~~ 237 (504)
T PTZ00294 183 --------------DVTNASRTFLMNIKTLKWDEELLNKFGIPKE---TLPE----IKSSSENFGT-ISGE---AVPLLE 237 (504)
T ss_pred --------------EhhhhHHhhccCcccCccCHHHHHHhCCCHH---HCCC----ccCCccccCc-cchh---hcCCCC
Confidence 5678999999999999999999999999975 3575 5788999994 9854 567889
Q ss_pred CCcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeec-cCccccCC-cccccccccc---CC
Q 012530 152 GTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS-RNKLFIPG-VWGPFWSAMV---PK 226 (461)
Q Consensus 152 g~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~-~~~~~~~~~~---~~ 226 (461)
|+||++|++|++|+++|+ |... +|++.+++|||+++...+ +.+..++. ....+.+... |+
T Consensus 238 g~pV~~g~~D~~aa~~G~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (504)
T PTZ00294 238 GVPITGCIGDQQAALIGH-GCFE--------------KGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPT 302 (504)
T ss_pred CCcEEEEecHHHHHHHhC-cCCC--------------CCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCc
Confidence 999999999999999999 5542 378999999998865544 34444432 2211111111 45
Q ss_pred eeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCC
Q 012530 227 FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIA 306 (461)
Q Consensus 227 ~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~ 306 (461)
.|+++++++++|.+++||+++|+.. ..|+.+++.+++. ++++|++|+|||.|+|+|+|
T Consensus 303 ~~~~~~~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~~----------~g~~gl~~~P~l~G~r~P~~ 360 (504)
T PTZ00294 303 VYALEGSIAVAGAGVEWLRDNMGLI------------SHPSEIEKLARSV----------KDTGGVVFVPAFSGLFAPYW 360 (504)
T ss_pred EEEEechhhhhHHHHHHHHHHhCCC------------CCHHHHHHHHHhC----------CCCCCEEEeCcccCCCCCCC
Confidence 8999999999999999999987521 1245555554432 36789999999999999999
Q ss_pred CCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeec
Q 012530 307 DPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP 385 (461)
Q Consensus 307 d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~ 385 (461)
|+++||+|+|++.+|++.| ++|||+|||||.+|++++.|++ .|.++++|+++||+++|++|+||+||++|+||+++
T Consensus 361 ~~~arg~~~Gl~~~~~~~~---i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~ 437 (504)
T PTZ00294 361 RPDARGTIVGMTLKTTRAH---IVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVP 437 (504)
T ss_pred CCCCCEEEEccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEec
Confidence 9999999999999999999 5679999999999999999987 48888999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhccccCCHHHHHHHhhc-CCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 386 RENESVLLGAAILGAVAAKRYSSLIEAMKAMNA-AGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRS 454 (461)
Q Consensus 386 ~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~-~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~ 454 (461)
+..|++++|||++|++++|.|+|++++. .++. ..++|+| |+++++ |+++|++|+++|+++..|.|
T Consensus 438 ~~~e~~alGaAl~aa~a~G~~~~~~~~~-~~~~~~~~~~~P--~~~~~~-y~~~~~~~~~~~~~~~~~~~ 503 (504)
T PTZ00294 438 EMAETTALGAALLAGLAVGVWKSLEEVK-KLIRRSNSTFSP--QMSAEE-RKAIYKEWNKAVERSLKWAK 503 (504)
T ss_pred CcccchHHHHHHHHHhhcCccCCHHHHH-HhccCCCcEECC--CCCHHH-HHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999875 4444 6789999 999999 99999999999999887654
No 11
>PLN02295 glycerol kinase
Probab=100.00 E-value=2.4e-70 Score=575.77 Aligned_cols=381 Identities=17% Similarity=0.282 Sum_probs=321.2
Q ss_pred CCchhHHHHHHHHccC---c-hHHhhhCCCCCCCChHHHHHHHHhhchhhhhc----cceeeechhhhhhhhcCC-----
Q 012530 1 MDHRAVKQAEKINSRN---S-PVLQYCGGAVSPEMQPPKLLWVKENLQESWSM----VFRWMDLSDWLSYRATGD----- 67 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~---~-~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~----~~~~l~~~dyl~~~LTG~----- 67 (461)
+|+|+.++++++++.. + .++++||+++++.++++||+||++|+||+|+| +.++++++|||.|+|||+
T Consensus 104 ~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~ 183 (512)
T PLN02295 104 MDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGGASGGV 183 (512)
T ss_pred cccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHHHhhhcCceEEEcHHHHHHHHhhCCCCCCe
Confidence 6999999999998753 2 46699999999999999999999999999955 558999999999999994
Q ss_pred CCCccccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHc
Q 012530 68 DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKEL 147 (461)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~ 147 (461)
..+ |.|+||+|++||+++++||+++++.+||++. .||+ ++.+++++| +|++++++
T Consensus 184 ~~t---------------d~s~As~t~l~D~~~~~W~~ell~~~gi~~~---~lP~----l~~~~~~~G-~v~~~~a~-- 238 (512)
T PLN02295 184 HVT---------------DVTNASRTMLMNLKTLDWDKPTLEALGIPAE---ILPK----IVSNSEVIG-TIAKGWPL-- 238 (512)
T ss_pred EEe---------------eHHHhHHhhccCcccCcCCHHHHHHcCCCHH---HCCC----cccCcccee-cccccccc--
Confidence 332 5688999999999999999999999999975 3575 578899999 49998765
Q ss_pred CCCCCCcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccC-ccccCC-ccccccccc--
Q 012530 148 GLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN-KLFIPG-VWGPFWSAM-- 223 (461)
Q Consensus 148 GL~~g~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~-~~~~~~-~~~~~~~~~-- 223 (461)
+||||++|++|++|+++|+ |. . +|++.+++|||+++...+.. +..++. .... +.+.
T Consensus 239 ---~g~pV~~g~~D~~aa~~G~-G~-~--------------~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 298 (512)
T PLN02295 239 ---AGVPIAGCLGDQHAAMLGQ-RC-R--------------PGEAKSTYGTGCFILLNTGEEVVPSKHGLLTT-VAYKLG 298 (512)
T ss_pred ---CCCcEEEEechHHHHHhhC-cC-C--------------CCCeEEEEcccceeeeecCCccccCCCCceEE-EEEEec
Confidence 4999999999999999999 54 3 37899999999886555544 233222 1111 1112
Q ss_pred --cCCeeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCC
Q 012530 224 --VPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGN 301 (461)
Q Consensus 224 --~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ge 301 (461)
.|+.|+++++++++|.+++||++.|... ..|+.+++++++. ++++|++|+|||.|+
T Consensus 299 ~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~~~~~a~~~----------~g~~gl~f~P~l~G~ 356 (512)
T PLN02295 299 PDAPTNYALEGSVAIAGAAVQWLRDNLGII------------KSASEIEALAATV----------DDTGGVYFVPAFSGL 356 (512)
T ss_pred CCCCceEEEechhhhhHHHHHHHHHHcCCC------------CCHHHHHHHHHhC----------CCCCceEEeCcccCC
Confidence 2788999999999999999999987421 1244455544322 367899999999999
Q ss_pred CCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCccEEEEeccCCCCHHHHHHHH
Q 012530 302 RSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH------GHKIDTLLACGGLAKNPLFLQQHA 375 (461)
Q Consensus 302 r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~------g~~~~~i~~~GGga~s~~w~Qi~A 375 (461)
|+|+||+++||+|+|++..|+++| ++|||+|||||++|++++.|++. +.++++|+++||++||++||||+|
T Consensus 357 r~P~~~~~arg~~~Gl~~~~~~~~---l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~A 433 (512)
T PLN02295 357 FAPRWRDDARGVCVGITRFTNKAH---IARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQA 433 (512)
T ss_pred CCCcCCCCCCEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHH
Confidence 999999999999999999999999 56799999999999999999865 236889999999999999999999
Q ss_pred hhhCCceeecCCCCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 376 DIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRS 454 (461)
Q Consensus 376 dv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~ 454 (461)
|++|+||++++..|++++|||++|++++|.|++.+++...+++..++|+| |+++++ |+++|++|+++|++...+.+
T Consensus 434 Dv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~~~~~~P--~~~~~~-y~~~y~~~~~~~~~~~~~~~ 509 (512)
T PLN02295 434 DLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEKWKNTTTFRP--KLDEEE-RAKRYASWCKAVERSFDLAD 509 (512)
T ss_pred HhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhccCCCeEECC--CCCHHH-HHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999988765578888899999 999999 99999999999998775543
No 12
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=3.9e-70 Score=572.27 Aligned_cols=380 Identities=21% Similarity=0.322 Sum_probs=323.9
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccc----eeeechhhhhhhhcC--CCCCcc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF----RWMDLSDWLSYRATG--DDTRSL 72 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~----~~l~~~dyl~~~LTG--~~~~~~ 72 (461)
+|+|+.+++++|++.. ++++++||+++++.++++||+|+++|+||+|+|++ ++++++|||.|+||| +..+
T Consensus 101 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~~~~~~~~~~~dyl~~~LtG~~~~~~-- 178 (493)
T TIGR01311 101 QDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGGKVHVT-- 178 (493)
T ss_pred cccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhhcCCeEEECHhHhhhhhccCCceEEe--
Confidence 5999999999998875 67999999999999999999999999999999775 488999999999999 6543
Q ss_pred ccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCC
Q 012530 73 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPG 152 (461)
Q Consensus 73 ~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g 152 (461)
|+|+||++++||+++++|++++++.+||++. +||+ ++.+|+++| .|+++ |+++|
T Consensus 179 -------------d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~---~lP~----l~~~g~~~G-~v~~~-----~l~~g 232 (493)
T TIGR01311 179 -------------DVTNASRTMLFNIHTLDWDDELLELFGIPRE---ILPE----VRSSSEVYG-YTDPG-----LLGAE 232 (493)
T ss_pred -------------ccchhhhhhcccccccccCHHHHHHcCCCHH---HCCC----ccCCcccee-ccccc-----ccCCC
Confidence 5678899999999999999999999999975 3565 578899999 49987 67799
Q ss_pred CcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeec-cCccccCCccccccccccCC---ee
Q 012530 153 TPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS-RNKLFIPGVWGPFWSAMVPK---FW 228 (461)
Q Consensus 153 ~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~ 228 (461)
|||++|++|++|+++|+ |..+ +|++++++|||+++.+.+ +.+..++......+++..++ .|
T Consensus 233 ~pV~~g~~D~~aa~~G~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (493)
T TIGR01311 233 IPITGVLGDQQAALFGQ-ACFK--------------PGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVY 297 (493)
T ss_pred ceEEEecccHHHHHhhC-cCCC--------------CCceEEeecccceEeeecCCccccCCCCceEEEEEecCCCCceE
Confidence 99999999999999999 5443 489999999998865544 33433332111112223333 49
Q ss_pred EecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCC
Q 012530 229 LTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 308 (461)
Q Consensus 229 ~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~ 308 (461)
+.++++.++|.+++||++.|+.. ..|+.+++.+++. ++++|++|+|||.|+|+|+||+
T Consensus 298 ~~~g~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~~----------~g~~g~~~~P~l~G~r~P~~~~ 355 (493)
T TIGR01311 298 ALEGSVFVAGAAVQWLRDNLKLI------------KHAAESEALARSV----------EDNGGVYFVPAFTGLGAPYWDP 355 (493)
T ss_pred EEEeehhhhHHHHHHHHHHhCCC------------CCHHHHHHHHhcC----------CCCCCEEEeCcccCCCCCcCCC
Confidence 99999999999999999988521 2255555544321 4688999999999999999999
Q ss_pred CCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 309 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 309 ~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
++||+|+|++.+|++.| ++|||+|||||++|++++.|++. |.++++|+++||++||++|+||+|||+|+||++++.
T Consensus 356 ~arg~~~Gl~~~~~~~~---l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~ 432 (493)
T TIGR01311 356 DARGAIFGLTRGTTKAH---IARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPKV 432 (493)
T ss_pred CCcEEEECcCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecCC
Confidence 99999999999999999 57799999999999999999874 778899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012530 388 NESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ 452 (461)
Q Consensus 388 ~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~ 452 (461)
.|++++|||++|++++|.|+|++++ +.+++..++|+| ++++++ |+++|++|+++|+++..|
T Consensus 433 ~e~~alGaA~~a~~~~G~~~~~~~a-~~~~~~~~~~~P--~~~~~~-y~~~~~~~~~~~~~~~~~ 493 (493)
T TIGR01311 433 TETTALGAAYAAGLAVGYWKSLEEI-EALWRVEKTFEP--EMDEEE-REARYAGWKEAVKRSLGW 493 (493)
T ss_pred CcchHHHHHHHHHhhcCcCCCHHHH-HHhcCCCcEECC--CCCHHH-HHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987 788888899999 888988 999999999999987653
No 13
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=5.4e-67 Score=545.43 Aligned_cols=363 Identities=20% Similarity=0.242 Sum_probs=310.1
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++++.. ++++++||+++.+.++++||+|+++|+||+|+|+++|++++|||.|||||+.++
T Consensus 101 ~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~-------- 172 (470)
T PRK10331 101 KCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQAHAWLFISSLINHRLTGEFTT-------- 172 (470)
T ss_pred cCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHHHhhhhcCHHHHHHHhhcCcccc--------
Confidence 6999999999999875 578999999999999999999999999999999999999999999999999764
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeec
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTS 158 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g 158 (461)
|+|+||.|++||+++++|++++++.+||++. +||+ ++++|+++| +|++++|+++||++|+||++|
T Consensus 173 -------d~s~As~t~l~d~~~~~W~~ell~~~gi~~~---~lP~----i~~~g~~~G-~v~~~~a~~~GL~~g~pV~~g 237 (470)
T PRK10331 173 -------DITMAGTSQMLDIQQRDFSPEILQATGLSRR---LFPR----LVEAGEQIG-TLQPSAAALLGLPVGIPVISA 237 (470)
T ss_pred -------chhhccceeeeecccCCCCHHHHHHcCCCHH---HCCC----ccccccccc-ccCHHHHHHhCCCCCCeEEEc
Confidence 4578899999999999999999999999975 3565 678899999 599999999999999999999
Q ss_pred hhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCc--ccc-ccccccCCeeEeccccc
Q 012530 159 LIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGV--WGP-FWSAMVPKFWLTEGGQS 235 (461)
Q Consensus 159 ~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~ 235 (461)
+||++|+++|+ |.. ++++++++|||+++..++++|..+... ... +..+..++.|..++...
T Consensus 238 ~~D~~aa~~g~-g~~---------------~g~~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (470)
T PRK10331 238 GHDTQFALFGS-GAG---------------QNQPVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQSGLYNPGMQWL 301 (470)
T ss_pred cccHHHHHhCC-CCC---------------CCCEEEecchhhhheeecCCCcccccccccccceeccccCceeeechhhH
Confidence 99999999999 543 278999999999987777766543321 011 11123356666544344
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEE
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 315 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~ 315 (461)
.|.+++|++++|.. +.+.|+.|++++++. | |+++|++|+|||.|+| ||+|+
T Consensus 302 -~g~~~~W~~~~~~~-----------~~~~y~~l~~~a~~~------~---~g~~gl~~~p~~~g~~--------rg~~~ 352 (470)
T PRK10331 302 -ASGVLEWVRKLFWT-----------AETPYQTMIEEARAI------P---PGADGVKMQCDLLACQ--------NAGWQ 352 (470)
T ss_pred -HHHHHHHHHHHhcc-----------cCchHHHHHHHHhcC------C---CCCCceEecccccccC--------ceeEE
Confidence 45599999998752 124688888876543 2 6789999999999988 99999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHH
Q 012530 316 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLG 394 (461)
Q Consensus 316 Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alG 394 (461)
|++..|+++| ++||++|||||++|++++.|++. +.++++|+++||++||++|+||+|||+|+||++++..|++++|
T Consensus 353 Gl~~~~~~~~---l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~G 429 (470)
T PRK10331 353 GVTLNTTRGH---FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAG 429 (470)
T ss_pred CCCCCcCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHH
Confidence 9999999999 57899999999999999999986 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHH
Q 012530 395 AAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA 437 (461)
Q Consensus 395 aA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~ 437 (461)
||++|++++|.|+|++++.+.+.+..++|+| + .+++.|++
T Consensus 430 aA~la~~~~G~~~~~~~a~~~~~~~~~~~~P--~-~~~~~y~~ 469 (470)
T PRK10331 430 AAMFGWYGVGEFSSPEQARAQMKYQYRYFYP--Q-TEPEFIEE 469 (470)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhhcceeECC--C-ccHhhhhc
Confidence 9999999999999999988888877889999 8 56777764
No 14
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-66 Score=540.90 Aligned_cols=393 Identities=28% Similarity=0.406 Sum_probs=337.7
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++.+.. ++.+..||+++.+.++++||+|+++|+||+|+|+.+|++++|||.|+|||+.++
T Consensus 104 ~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~k~~~il~~~dyl~~rLTG~~~~-------- 175 (502)
T COG1070 104 NDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDLFAKAAKILLIKDYLRYRLTGEFAT-------- 175 (502)
T ss_pred cchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHHHHhhhheechHHHHHHHHhCCccc--------
Confidence 5999999999999876 577888999999999999999999999999999999999999999999999865
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCc-cccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEee
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGD-LIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT 157 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~-~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~ 157 (461)
|+|+||+|++||++++.|+.++|+.+|+++ . +||+ ++.+|+++| .|++++|+++||++++||++
T Consensus 176 -------e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~---~lp~----vv~~g~~~G-~l~~e~A~~~Gl~~~~pV~~ 240 (502)
T COG1070 176 -------EISDASGTGLLDIRTRKWDWELLAALGLPERD---LLPP----VVEPGEVLG-TLTPEAAEELGLPAGTPVVV 240 (502)
T ss_pred -------ccccccccccccccccccCHHHHHHcCCChHH---hCCC----ccCccceec-cccHHHHHHhCCCCCCeEEE
Confidence 467899999999999999999999999996 4 4575 678999999 59999999999999999999
Q ss_pred chhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccch
Q 012530 158 SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSAT 237 (461)
Q Consensus 158 g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (461)
|+||++++++|+ |... ++++..++||+.++...++++..++......+++..++.|+.++..+++
T Consensus 241 G~~D~~~a~lg~-g~~~--------------~g~~~~~~gts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (502)
T COG1070 241 GGGDNAAAALGA-GAVD--------------PGDVSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTG 305 (502)
T ss_pred CCchHHHHhccC-CCcC--------------CCcEEEEeccccEEeeeccccccCCccceeeecccCCCeEEEEEEeccc
Confidence 999999999999 6664 3679999999999888888766655444333456668888899999999
Q ss_pred hHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcC
Q 012530 238 GALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGM 317 (461)
Q Consensus 238 G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl 317 (461)
|.+++|+++.+...+ .+..+..+....+ +.+++.+++|+|||+|||.|++|+.+||.|+|+
T Consensus 306 ~~~l~w~~~~~~~~~------------~~~~~~~~~~~~~-------~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~ 366 (502)
T COG1070 306 GWLLEWLRELFGLAE------------SYPELLEEALAVP-------APAGAIGLLFLPYLSGERGPHADPAARGGFVGL 366 (502)
T ss_pred HHHHHHHHHHhcccc------------CcHHHHHHHHhcc-------CCCCCCCcEEeccccCCcCCCCCccceeEEEcc
Confidence 999999999876421 1222222222111 125788999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHH
Q 012530 318 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAA 396 (461)
Q Consensus 318 ~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA 396 (461)
+..|+++| ++||++||++|.+++.++.|++. |.++++|+++||++||++|+||+||++|+||.++...|++++|+|
T Consensus 367 ~~~~~~~~---l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A 443 (502)
T COG1070 367 TLPHTRAH---LARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGA 443 (502)
T ss_pred ccccCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHH
Confidence 99999999 56799999999999999999997 888999999999999999999999999999999998999999888
Q ss_pred HHHHHhccccC-CHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 397 ILGAVAAKRYS-SLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 456 (461)
Q Consensus 397 ~lA~~~~G~~~-~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~~ 456 (461)
++++.+++.+. +.+++.+.+.. .+.+.| |+++.+.|+++|++|+++|++++...+.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p--~~~~~~~y~~~~~~~~~~y~~~~~~~~~~ 501 (502)
T COG1070 444 ALAAAALGGIYDSAEGALKAVVD-ARRIIP--DPERAAAYQELYERYRALYQALLALYRQL 501 (502)
T ss_pred HHHHHHhCCCCccHHHHhhcccc-ccccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888876554 44554444433 788999 99999999999999999999999887654
No 15
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=4e-64 Score=522.94 Aligned_cols=358 Identities=20% Similarity=0.247 Sum_probs=303.2
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++.+.. ++++++||+++.+.++++||+|+++|+||+|+|+++|++++|||.|+|||+..+
T Consensus 100 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~-------- 171 (465)
T TIGR02628 100 KCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERMHKFVFISSMITHRLTGEFTT-------- 171 (465)
T ss_pred cCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHHHHHhhCcHHHHHHHHhCCccc--------
Confidence 5999999999998765 678999999999999999999999999999999999999999999999999764
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeec
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTS 158 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g 158 (461)
|+|+||++++||+++++||+++|+.+||++. .||+ ++++++++| .|++++|+++||++||||++|
T Consensus 172 -------d~s~As~t~l~d~~~~~w~~ell~~~gi~~~---~lP~----l~~~~~~~G-~v~~~~a~~~Gl~~g~pV~~g 236 (465)
T TIGR02628 172 -------DITMAGTSMMTDLTQRNWSPQILQALGLSRR---LFPP----LVEAGEQIG-TLQNSAAAMLGLPVGVPVISA 236 (465)
T ss_pred -------chhhhhcceeeecCcCCCCHHHHHHcCCCHH---HCCC----cccCCccce-eeCHHHHHHhCCCCCCCEEec
Confidence 4578899999999999999999999999975 3565 578899999 599999999999999999999
Q ss_pred hhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccc-cccc--cccCCeeEeccccc
Q 012530 159 LIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWG-PFWS--AMVPKFWLTEGGQS 235 (461)
Q Consensus 159 ~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~ 235 (461)
++|++|+++|+ +.. ++++++++|||+++...+++|..+..... .+.+ +..++.|...+...
T Consensus 237 ~~D~~aa~~g~-g~~---------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 300 (465)
T TIGR02628 237 GHDTQFALFGS-GAE---------------QNQPVLSSGTWEILMARSQQVDTSLLSQYAGSTCELDSQAGLYNPAMQWL 300 (465)
T ss_pred CccHHHHHhcc-CCC---------------CCcEEEeccchhhheeccCcCCCCccccccccccccccCCceeeehhhhh
Confidence 99999999998 543 37899999999988777777655443221 1111 23356676654444
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeE-EccCCCCCCCCCCCCCCceeE
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH-VLPDFHGNRSPIADPKSKGII 314 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~-f~P~l~Ger~P~~d~~a~g~~ 314 (461)
++| +++||++.|...+ . ...+.|+.|++.+++. | |+++|++ |+|++. +.+||+|
T Consensus 301 ~g~-~~~W~~~~~~~~~-----~--~~~~~~~~l~~~a~~~------~---~g~~gl~~~~p~~~--------~~a~g~~ 355 (465)
T TIGR02628 301 ASG-VLEWVRKLFFTAE-----T--PSDHYYQMMIEEARLI------A---NGADGVVNFQCDLL--------SCGQGGI 355 (465)
T ss_pred hhh-HHHHHHHHhcchh-----h--ccccHHHHHHHHHHhC------C---CCCCcceeecccCC--------cccceeE
Confidence 444 8999999874210 0 0124578888877654 2 5788998 988764 5689999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhH
Q 012530 315 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLL 393 (461)
Q Consensus 315 ~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~al 393 (461)
+|++.+|++.| ++||++|||||.+|++++.|++. +.++++|+++||++||++|+||+||++|+||++++..|++++
T Consensus 356 ~Gl~~~~~~~~---l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~l 432 (465)
T TIGR02628 356 QGLTLNTTRGH---IYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVA 432 (465)
T ss_pred ECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHH
Confidence 99999999999 57899999999999999999986 467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCHHHHHHHhhcCCeEEcC
Q 012530 394 GAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 425 (461)
Q Consensus 394 GaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P 425 (461)
|||++|++++|.|+|++++.+.+.+..++|+|
T Consensus 433 GaA~~a~~a~G~~~~~~~a~~~~~~~~~~~~P 464 (465)
T TIGR02628 433 GAAMFGFYGVGEYNSPEEAQAQMHPQYRYFYP 464 (465)
T ss_pred HHHHHHHHhcCccCCHHHHHHHhhccceeeCC
Confidence 99999999999999999988888877889999
No 16
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=1.8e-62 Score=510.10 Aligned_cols=366 Identities=15% Similarity=0.163 Sum_probs=302.1
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++.+.. ++++++||+++.+.++++||+|+++|+|++|+|+++|++++|||.|+|||+..+
T Consensus 85 ~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~-------- 156 (471)
T PRK10640 85 RDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYRLTGKMNW-------- 156 (471)
T ss_pred cCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHHHhCCcce--------
Confidence 6999999999999875 679999999999999999999999999999999999999999999999999754
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEee-
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT- 157 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~- 157 (461)
|+|+||+|++||+++++||+++++.+||+.. +||+ ++.+++++|. +++++ | .|+||++
T Consensus 157 -------d~s~as~t~l~d~~~~~W~~ell~~~Gi~~~---~LP~----lv~~~~~~G~-v~~~~----g--~g~pVv~~ 215 (471)
T PRK10640 157 -------EYTNATTTQLVNINSDDWDESLLAWSGAPKA---WFGR----PTHPGNVIGH-WICPQ----G--NEIPVVAV 215 (471)
T ss_pred -------eecHhhhccccCCCcCCcCHHHHHHcCCCHH---HcCC----CcCCCcccee-eeccc----C--CCCCEEEe
Confidence 4678999999999999999999999999975 3575 5688999994 77653 5 6899998
Q ss_pred chhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCc-cccccc-cccCCeeEeccccc
Q 012530 158 SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGV-WGPFWS-AMVPKFWLTEGGQS 235 (461)
Q Consensus 158 g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 235 (461)
|+||++|+++|+ |... ++++++++|||+++..++++|..++.. ...+.+ +..++.|.++..+.
T Consensus 216 g~~D~~aa~~g~-g~~~--------------~g~~~~s~GT~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 280 (471)
T PRK10640 216 ASHDTASAVIAS-PLND--------------SDAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIM 280 (471)
T ss_pred CCCcHHHHhhcc-CCCC--------------CCeEEEEeccHhhhheecCCCcCCHHHHHhccCccCCCCceEEEecchh
Confidence 699999999999 5443 489999999999988888877655432 111222 23467776665332
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCC-CCceeE
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP-KSKGII 314 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~-~a~g~~ 314 (461)
| +|+++++.... +...|+.+.+++++. |+++|++ +| .|+|. +|| ++||+|
T Consensus 281 --g---~W~~~~~~~~~---------~~~~~~~l~~~a~~~----------~g~~gli-~p--~ger~--~~~~~arg~~ 331 (471)
T PRK10640 281 --G---LWLLQRVLQER---------QITDLPALIAATAAL----------PACRFLI-NP--NDDRF--INPPSMCSEI 331 (471)
T ss_pred --H---HHHHHHHHHHh---------ccCCHHHHHHHHHhC----------CCCCcee-CC--Ccccc--cCchhhHHHH
Confidence 3 89999874210 123466666654432 3678886 68 79994 675 899999
Q ss_pred EcCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 315 CGMTLDS------SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 315 ~Gl~~~~------~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
+|++..| ++.| ++|||+|||||.+|++++.|++. +.++++|+++||++||++|+||+||++|+||.+.+.
T Consensus 332 ~gl~~~~G~~~~~~~~~---l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~ 408 (471)
T PRK10640 332 QAACRETAQPVPESDAE---LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGPV 408 (471)
T ss_pred HHHHHHhCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHhCCCeeeCCh
Confidence 7777665 9999 57799999999999999999975 677899999999999999999999999999988764
Q ss_pred CCchhHHHHHHHHHhccccCCHHHHHHHhhc---CCeEEcCCCChhhHHHHHHHHHHHHHHHHH
Q 012530 388 NESVLLGAAILGAVAAKRYSSLIEAMKAMNA---AGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 448 (461)
Q Consensus 388 ~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~---~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~ 448 (461)
|++++|||++|++++|.+++++++ ++++. ..++|+| |++ ..|+++|..|+++|+.
T Consensus 409 -ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P--~~~--~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 409 -EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLTTFTP--NPD--SEIARHVAQFQSLRQT 466 (471)
T ss_pred -hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCceEEcC--CCh--HHHHHHHHHHHHHhcc
Confidence 899999999999999999999886 66665 5789999 765 6799999999999864
No 17
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=2.1e-61 Score=475.30 Aligned_cols=383 Identities=20% Similarity=0.266 Sum_probs=312.7
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhcc----ceeeechhhhhhhhcCCCCCcccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMV----FRWMDLSDWLSYRATGDDTRSLCT 74 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~----~~~l~~~dyl~~~LTG~~~~~~~~ 74 (461)
+|+|+.+.|++|++.. +.+.++||.++.|+|+..|++|+.+|.|..-+|+ ..|.++..||.|+|||...
T Consensus 105 QdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtWLiw~LTgg~~----- 179 (499)
T COG0554 105 QDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWKLTGGKV----- 179 (499)
T ss_pred eccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhhcCCeEEecchhhheeeccCCce-----
Confidence 5999999999999985 6788999999999999999999999999777776 5689999999999999542
Q ss_pred ccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCc
Q 012530 75 TVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTP 154 (461)
Q Consensus 75 ~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~p 154 (461)
+.||+||||+|+|||+++.+||+++|+.||||+.+ ||++. ++.++.|. ... -.+...+|
T Consensus 180 --------h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~---LPev~----~ss~~~G~-t~~-----~~~g~~vP 238 (499)
T COG0554 180 --------HVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSM---LPEVR----PSSEIYGV-TGI-----GFLGAEVP 238 (499)
T ss_pred --------eccccchhHHHhcccccccCCCHHHHHHhCCChHh---Ccccc----cccccccc-ccc-----cccCCcee
Confidence 11367999999999999999999999999999864 57754 44555552 222 23456799
Q ss_pred EeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeecc-CccccCCccccccccccC--CeeEec
Q 012530 155 VGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-NKLFIPGVWGPFWSAMVP--KFWLTE 231 (461)
Q Consensus 155 V~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ 231 (461)
|..-.|||+||++|.+|.. +|++-.+.||.+++...+. ++...++..........+ -.|.+|
T Consensus 239 I~g~~GDQQAALfGq~c~~---------------pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~gk~~YALE 303 (499)
T COG0554 239 ITGVAGDQQAALFGQGCFE---------------PGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDGKVTYALE 303 (499)
T ss_pred eccccchhHHHHhhcccCC---------------cCccccccccceeeeeccCCccccCCCCceeEEEeccCCeEEEEEe
Confidence 9999999999999985543 4888999999998877664 344444321111112223 359999
Q ss_pred ccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCc
Q 012530 232 GGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSK 311 (461)
Q Consensus 232 ~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~ 311 (461)
|.+..+|++++||+|.+..- +.....+..++++ +.++|++|+|-|.|.++||||+++|
T Consensus 304 Gsif~aGaavqWLrd~L~~i------------~~a~~~e~~A~~~----------~~~~gVy~VPAFtGLgAPyWd~~aR 361 (499)
T COG0554 304 GSIFVAGAAVQWLRDGLGLI------------DDASDSEELAESV----------EDNGGVYFVPAFTGLGAPYWDSDAR 361 (499)
T ss_pred cceeehhhHHHHHHHhcCcc------------CchhHHHHHHhcc----------CCCCceEEEcccccCCCCCcCcccc
Confidence 99999999999999976431 1122233333322 3478999999999999999999999
Q ss_pred eeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCc
Q 012530 312 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 390 (461)
Q Consensus 312 g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~ 390 (461)
|.|+||+..++++|+ .||++|+|||+.+++++.|++. +.++++|+|.||.++|+++||++||++|+||+++...|+
T Consensus 362 Gai~Gltrgt~~~hi---~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~Et 438 (499)
T COG0554 362 GAIFGLTRGTTKAHI---ARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVLET 438 (499)
T ss_pred eeEEeeCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeeccccchh
Confidence 999999999999995 5699999999999999999874 668999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012530 391 VLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQR 453 (461)
Q Consensus 391 ~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~ 453 (461)
+|+|||++|+.++|.++|.+|.. ...+..+.|+|..+.+. -+++|..|++..++-+.|.
T Consensus 439 TAlGaA~lAGla~G~w~~~~el~-~~~~~~~~f~p~m~~~~---r~~~y~~W~~AV~rs~~~~ 497 (499)
T COG0554 439 TALGAAYLAGLAVGFWKDLDELA-ELWPLDKEFEPGMDEEE---REELYAGWKKAVKRSLGWR 497 (499)
T ss_pred hHHHHHHHHhhhhCcCCCHHHHH-hhhcccceeCCCCCHHH---HHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999864 44567899999665443 3689999999988877654
No 18
>PLN02669 xylulokinase
Probab=100.00 E-value=1.7e-61 Score=510.13 Aligned_cols=378 Identities=17% Similarity=0.141 Sum_probs=312.1
Q ss_pred CCchhHHHHHHHHccC---chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCC-Ccccccc
Q 012530 1 MDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDT-RSLCTTV 76 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~-~~~~~~~ 76 (461)
+|+|+.++++++++.. ++++++||+++++.++.+||+|+++|+||+|+|+.+|+.++|||.|+|||+.. +
T Consensus 139 ~D~Ra~~e~~~l~~~~gg~~~l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~------ 212 (556)
T PLN02669 139 MDSSTTKQCREIEEAVGGAAELSKLTGSRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASI------ 212 (556)
T ss_pred CCccHHHHHHHHHHHcCcHHHHHHHHCCcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccc------
Confidence 6999999999999764 47899999999999999999999999999999999999999999999999863 3
Q ss_pred ccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEe
Q 012530 77 CKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVG 156 (461)
Q Consensus 77 ~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~ 156 (461)
|.|+||++++||+++++||+++|+.+|+... ++||+ ++.+++++| +|++++|+++||++||||+
T Consensus 213 ---------D~sdasg~~l~Di~~~~Ws~~ll~~~~~~l~--~~Lp~----~~~~~~~~G-~v~~~~a~~~Gl~~g~pV~ 276 (556)
T PLN02669 213 ---------DETDGAGMNLMDIEKRCWSKAALEATAPGLE--EKLGK----LAPAHAVAG-KIHPYFVQRFGFSSNCLVV 276 (556)
T ss_pred ---------cchhhhhhhhhccccCCcCHHHHHhhCccHH--HHCcC----CCCCCccee-eeCHHHHHHhCCCCCCEEE
Confidence 4578899999999999999999999965421 14565 567789999 4999999999999999999
Q ss_pred echhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCcccccccc-ccCCeeEeccccc
Q 012530 157 TSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSA-MVPKFWLTEGGQS 235 (461)
Q Consensus 157 ~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 235 (461)
+|++|++|+++|+ |... +|++.+++|||+++..+++++..++... +++| ..|+.|+.+++..
T Consensus 277 ~g~gD~~a~~~G~-g~~~--------------~g~~~~slGTs~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~~~ 339 (556)
T PLN02669 277 QWSGDNPNSLAGL-TLST--------------PGDLAISLGTSDTVFGITREPQPSLEGH--VFPNPVDPESYMVMLCYK 339 (556)
T ss_pred EecchHHHHHhcc-CCCC--------------CCeEEEEEcccceEEEecCCCCCCCCcc--eeeCccCCCCeEEEEEec
Confidence 9999999999999 6543 4899999999999888888766554322 2333 3388999999999
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCC----CCCCCc
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI----ADPKSK 311 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~----~d~~a~ 311 (461)
++|.+++|+++++.. ..|+.|++.+++. | |+++|++++||+.||+.|+ +++.++
T Consensus 340 ngg~~~~w~r~~~~~-------------~~~~~~~~~~~~~------~---~g~~g~l~~~~~~~e~~P~~~~~~~~~~~ 397 (556)
T PLN02669 340 NGSLTREDIRNRCAD-------------GSWDVFNKLLEQT------P---PLNGGKLGFYYKEHEILPPLPVGFHRYIL 397 (556)
T ss_pred chHHHHHHHHHHhcc-------------CcHHHHHHHHHhC------C---CCCCCEEEeeccCcccCCCCCCccchhhh
Confidence 999999999998731 3477787776543 2 5789999899999999996 567788
Q ss_pred eeEEcCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCce
Q 012530 312 GIICGMTLD---------SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPI 382 (461)
Q Consensus 312 g~~~Gl~~~---------~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV 382 (461)
|.|+|++.. |++.| ++|||+||++|++|.+++.|+ .+.++++|+++||++||++|+||+|||||+||
T Consensus 398 g~~~g~~~~~~~~~~~~~~~~~~---~~RAvlEg~a~~~r~~~~~l~-~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV 473 (556)
T PLN02669 398 ENFSGEALDGLVEEEVGEFDPPS---EVRAIIEGQFLSMRAHAERFG-MPVPPKRIIATGGASANQSILKLIASIFGCDV 473 (556)
T ss_pred ccccCcccccccccccccCCHHH---HHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEcChhcCHHHHHHHHHHcCCCe
Confidence 999999988 68888 577999999999999999996 35678999999999999999999999999999
Q ss_pred eecCCCCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeE-------------E--cCCCCh-hhHHHHHHHHHHHHHHH
Q 012530 383 ILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV-------------I--HPSKDP-KVKKYHDAKYLIFRELF 446 (461)
Q Consensus 383 ~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~-------------~--~P~~~~-~~~~~y~~~y~~y~~l~ 446 (461)
++++..|++++|||++|+++. +.+ ++ ..+++.... + +| .+ ...+.|..+.++|.++-
T Consensus 474 ~~~~~~ea~alGAA~~A~~~~--~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~ 546 (556)
T PLN02669 474 YTVQRPDSASLGAALRAAHGW--LCN--EQ-GSFVPISCLYEGKLEATSLSCKLAVKA--GDQELLSQYGLLMKKRMEIE 546 (556)
T ss_pred EecCCCCchHHHHHHHHHHHH--hhh--hh-cccCChhhhcccccccCcccceeeccC--CCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999954 433 11 222222222 2 45 33 55667777777777776
Q ss_pred HHHH
Q 012530 447 EQQV 450 (461)
Q Consensus 447 ~~~~ 450 (461)
+.+.
T Consensus 547 ~~~~ 550 (556)
T PLN02669 547 QQLV 550 (556)
T ss_pred HHHH
Confidence 6554
No 19
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=4.7e-57 Score=468.79 Aligned_cols=338 Identities=16% Similarity=0.160 Sum_probs=274.7
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++++.. ++++++||+++.+.++++||+||++|+|++|+|+++|++++|||.|||||+..+
T Consensus 97 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~-------- 168 (454)
T TIGR02627 97 RDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVAHFLLIPDYLNYRLTGKKVW-------- 168 (454)
T ss_pred CCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHHHhCCHHHHHHHheeCCcee--------
Confidence 6999999999998775 679999999999999999999999999999999999999999999999999754
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEee-
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT- 157 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~- 157 (461)
|+|+||+|++||+++++|++++++.+||++. +||+ ++++++++|. +++ +|+ +|+||++
T Consensus 169 -------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~lP~----l~~~~~~~G~-~~~-----~gl-~g~pVv~~ 227 (454)
T TIGR02627 169 -------EYTNATTTQLVNINTDDWDEDLLAYLGVPAA---WFGR----PTHPGNVIGL-WEC-----PQG-NQIPVVAV 227 (454)
T ss_pred -------eeehhhhcccccCCCCCcCHHHHHHcCCCHH---HcCC----ccCCCCeeEE-eec-----ccC-CCCCEEEE
Confidence 4678899999999999999999999999974 3565 5788999984 653 367 7999998
Q ss_pred chhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCcccc-cc-ccccCCeeEeccccc
Q 012530 158 SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGP-FW-SAMVPKFWLTEGGQS 235 (461)
Q Consensus 158 g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 235 (461)
|+||++|+++|+ |..+ +|++++++|||+++...+++|..++..+.. +. .+..++.|...+...
T Consensus 228 g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (454)
T TIGR02627 228 ATHDTASAVVAA-PLQG--------------ENAAYLSSGTWSLMGFESQTPITNEQALAANITNEGGADGRYRVLKNIM 292 (454)
T ss_pred CCchHHHHHhcC-CCCC--------------CCcEEEEEcHHHHhcccCCCCCCCHHHHHhccccccccccEEEeecchh
Confidence 899999999998 5442 489999999999887777766655432211 11 123456676655443
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCC-Ccee-
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK-SKGI- 313 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~-a~g~- 313 (461)
++ |+++.+... .+.+.|+.|.+.++. +| + |.|++.|++.|++||. +++.
T Consensus 293 -g~----W~~~~~~~~---------~~~~~~~~l~~~a~~------~p---~------~~g~~~~~~~~~~~~~~~~~~~ 343 (454)
T TIGR02627 293 -GL----WLLQRVCRE---------RDINDLPALIEQAQA------LP---A------FKSIINPNDDRFINPENMCEEI 343 (454)
T ss_pred -hh----HHHHHHHhh---------hccccHHHHHHHhcC------CC---C------CCeeeCCCcccccChhhhHHHH
Confidence 33 877765321 012346666655432 22 2 3366789999999995 5554
Q ss_pred -----EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 314 -----ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 314 -----~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
|+|++..|++.| ++|||+|||||.+|++++.|++. +.++++|+++||++||++|+||+||++|+||.+..
T Consensus 344 ~~~~~~~Gl~~~~~~~~---l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~- 419 (454)
T TIGR02627 344 QAYCRETNQPIPESDAE---LARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADACGIRVIAGP- 419 (454)
T ss_pred HHHHHHcCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHhCCceEcCC-
Confidence 499999999999 57899999999999999999985 77889999999999999999999999999998765
Q ss_pred CCchhHHHHHHHHHhccccCCHHHHHHH
Q 012530 388 NESVLLGAAILGAVAAKRYSSLIEAMKA 415 (461)
Q Consensus 388 ~e~~alGaA~lA~~~~G~~~~~~~a~~~ 415 (461)
.|++++|||++|++++|.|++++++.+.
T Consensus 420 ~e~~a~GaA~~a~~~~G~~~~~~~~~~~ 447 (454)
T TIGR02627 420 VEASTLGNIGVQLMALDEINDMAAFRQI 447 (454)
T ss_pred chHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 7789999999999999999999887443
No 20
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=428.73 Aligned_cols=393 Identities=37% Similarity=0.543 Sum_probs=316.4
Q ss_pred CCchhHHHHHHHHccC-ch---HHhhhCCCCCCCChHHHHHHHHhhchhh-hhccceeeechhhhhhhhcCCCCCccccc
Q 012530 1 MDHRAVKQAEKINSRN-SP---VLQYCGGAVSPEMQPPKLLWVKENLQES-WSMVFRWMDLSDWLSYRATGDDTRSLCTT 75 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~-~~---~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~-~~~~~~~l~~~dyl~~~LTG~~~~~~~~~ 75 (461)
||.|+..++++++... .. +...+|.+++++|..+||+||++|.|++ .++....+..++|+.|++++-.....+
T Consensus 110 ~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~-- 187 (516)
T KOG2517|consen 110 MDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEVLKAKEEGGFDLGTFDTWLATGLTGRSSC-- 187 (516)
T ss_pred eccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHHHHHHHHhcccchhhhhhheeecCCcccee--
Confidence 7999999999999876 22 2378999999999999999999999998 888888999999998888876532221
Q ss_pred cccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcE
Q 012530 76 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 155 (461)
Q Consensus 76 ~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV 155 (461)
+-+|++++|++++||..+..||..+++.+|||..+ +|+ +..+++.+|. + .+..+|+.+|+||
T Consensus 188 -------~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~l---lp~----i~s~~e~~g~-~---~~~~~~~~~g~~v 249 (516)
T KOG2517|consen 188 -------HCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNL---LPD----IRSSSEVYGT-T---AAGDLGLLEGTPV 249 (516)
T ss_pred -------ccccccccccccccchhhhhhhhhhhhhhCCCccc---CCc----cccccccccc-c---cccccccccCcce
Confidence 11378999999999999999999999999999865 354 5567776663 2 3446779999999
Q ss_pred eechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCc-c-ccCCccccc--cccc-cCCeeEe
Q 012530 156 GTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK-L-FIPGVWGPF--WSAM-VPKFWLT 230 (461)
Q Consensus 156 ~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~-~-~~~~~~~~~--~~~~-~~~~~~~ 230 (461)
.+..+|++|+++|..+.. .+....++||+.++..+.... . ..++.+... .... .+-.|.+
T Consensus 250 s~~lgDq~Aa~vg~~~~~---------------~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~l 314 (516)
T KOG2517|consen 250 SSCLGDQQASMVGQMCYK---------------PGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHAL 314 (516)
T ss_pred eechhhHHHHHHhHhhhc---------------CcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHH
Confidence 999999999999986543 268899999999886665432 1 223333210 0000 0112677
Q ss_pred cccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCC
Q 012530 231 EGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKS 310 (461)
Q Consensus 231 ~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a 310 (461)
++....+|..++|+++.+.. |+.+++. +++.... ..+.+++|.|.|.|.|+|+|||.+
T Consensus 315 eg~~a~~~~~v~w~~d~~~i---------------~~~~~~i-~~~~~~~------~~t~d~~f~P~f~G~~sP~~d~~a 372 (516)
T KOG2517|consen 315 EGHAAFAGALVQWLRDNLGI---------------IEELNEI-EKLAAEV------NLTSDVHFVPDFHGLRSPYADPTA 372 (516)
T ss_pred hcccchHHHHHHHHHHhhhH---------------HHHHHHH-HHHHHhh------cccCceEEEccccCCCCCCCCccc
Confidence 78888888889999887643 2223221 1122111 258999999999999999999999
Q ss_pred ceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCC
Q 012530 311 KGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG-HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 389 (461)
Q Consensus 311 ~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g-~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e 389 (461)
||+|+|++.+++..|++ ||++|+|||++|++++.|++.+ .++++++++||.+||++++|++||++|+||+++...|
T Consensus 373 rg~i~Gls~~ts~~hia---~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e 449 (516)
T KOG2517|consen 373 RGVIIGLSQDTSKEHLA---RAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVE 449 (516)
T ss_pred ceeEEEecCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchh
Confidence 99999999999999966 5999999999999999999876 7899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhccc--cCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 390 SVLLGAAILGAVAAKR--YSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQ 458 (461)
Q Consensus 390 ~~alGaA~lA~~~~G~--~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~~~~ 458 (461)
.+++|||++|+.+.|. |.+.+++. +....++|+| +.+. +.++.+|++|++++++++.|++.++.
T Consensus 450 ~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~~~~~~~P--~~~~-~~~~~ky~~w~~ave~~~~~~~~~~~ 515 (516)
T KOG2517|consen 450 AVALGAAMLAGAASGKWSYSSEEKAS--LTGVGKVFRP--NIDD-KLLDKKYQIWLKAVERQLGYRRIVDE 515 (516)
T ss_pred HHHHHHHHHHHhhcCCcchhhHHHHh--cCCCcceecC--CCCc-HHHHHHHHHHHHHHHHHhhHHhhccC
Confidence 9999999999999999 66666653 4678899999 4444 88999999999999999999998764
No 21
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=100.00 E-value=3.9e-35 Score=271.42 Aligned_cols=196 Identities=35% Similarity=0.567 Sum_probs=159.2
Q ss_pred EEEEecccceeeeeccCccc-cCCccccccccccCCeeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHH
Q 012530 192 MVLVCGTSTCHMAVSRNKLF-IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 270 (461)
Q Consensus 192 ~~~~~GTs~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (461)
+++++|||+++..++++|.. .++.+.++..+..++.|.++++.+++|..++|+++.+...+.+. +. ...++.+.
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~----~~-~~~~~~~~ 75 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLS----DE-EEIYEDLA 75 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCS----ST-THHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhh----hh-hhccchHH
Confidence 36899999999998888873 34455444434467889999999999999999999963211100 00 01122222
Q ss_pred HHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012530 271 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~ 350 (461)
...+ .. .+ +++++++|+|+|.|+|+|+||++++|+|+|++.+|++.+ ++||++||++|.++++++.|++
T Consensus 76 ~~~~-~~----~~---~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~---~~rAv~Egia~~~~~~~~~l~~ 144 (198)
T PF02782_consen 76 ELEA-AA----SP---PGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRAD---LARAVLEGIAFSLRQILEELEE 144 (198)
T ss_dssp HHHH-HH----TS---STCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-hh----cc---CcccceeeeeccccCcccccccccccccccCCcccCHHH---HHHHHHHhHHHHHHHhhhhccc
Confidence 1111 11 11 468999999999999999999999999999999999999 5779999999999999999998
Q ss_pred C-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHHHHhc
Q 012530 351 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 403 (461)
Q Consensus 351 ~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~ 403 (461)
. +.++++|+++||++||++|+|++||++|+||++++..|++++|||++|++++
T Consensus 145 ~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 145 LTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp HHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred cccccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 7 8999999999999999999999999999999999999999999999999874
No 22
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=274.10 Aligned_cols=380 Identities=16% Similarity=0.148 Sum_probs=286.2
Q ss_pred CCchhHHHHHHHHccC---chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCccccccc
Q 012530 1 MDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVC 77 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~ 77 (461)
||..++.+|++++... .++-++||.+.+.-|+.|+|+-+.+.+||+|++|.++-.+..|++..|-|..+.
T Consensus 139 mDsSTtkQC~ElE~~VGG~~~la~LTGSRAy~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~------- 211 (545)
T KOG2531|consen 139 MDSSTTKQCQELEEAVGGAQELAKLTGSRAYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAP------- 211 (545)
T ss_pred cccchHHHHHHHHHHhccHHHHHHhhcchhhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccc-------
Confidence 7999999999999875 678999999999999999999999999999999999999999999999998752
Q ss_pred cccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEee
Q 012530 78 KWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT 157 (461)
Q Consensus 78 ~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~ 157 (461)
.|.|++|++.|+|++++.||.++|+++.-+ +.++|-+ .+++-...| +|++..-+++|+++++.|+.
T Consensus 212 -------id~sDgsGMNL~dIr~k~ws~~~L~~~apd--L~~KL~~----pv~~~~~~G-~I~~Yfv~r~gF~p~C~Vv~ 277 (545)
T KOG2531|consen 212 -------IDESDGSGMNLLDIRKKKWSKALLDACAPD--LEEKLGK----PVPPMSIAG-TISKYFVKRYGFPPDCKVVP 277 (545)
T ss_pred -------eecccccCchHHHHhhhhhhHHHHhhhChh--HHHHhCC----CCCcccccc-chhhhhHhhcCCCCCCEEEe
Confidence 156788999999999999999999998532 2112222 234446777 59999999999999999999
Q ss_pred chhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCcccccccc-ccCCeeEecccccc
Q 012530 158 SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSA-MVPKFWLTEGGQSA 236 (461)
Q Consensus 158 g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 236 (461)
-.||.+++..|. -.. ++++.+|+|||..++.+++++.+.+... .++| ..++.|+.+-|.-|
T Consensus 278 ~tGDNpsslagL-~l~---------------~~dl~iSLGTSdTv~m~t~~~~p~~egH--vf~hP~~~~~YM~mlCfkN 339 (545)
T KOG2531|consen 278 STGDNPSSLAGL-PLR---------------PGDLLISLGTSDTVFMVTKEYHPSPEGH--VFCHPTDPNHYMGMLCFKN 339 (545)
T ss_pred cCCCChHHhhCc-ccc---------------CCceEEEecCcceEEEEcCCCCCCCCcc--eeccCCCccceEEEEEecC
Confidence 999999999998 333 3799999999999999999887666533 2334 45678999999888
Q ss_pred hhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeE--
Q 012530 237 TGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGII-- 314 (461)
Q Consensus 237 ~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~-- 314 (461)
|+..=+-+|+.. ...+|+.+++.+.+-+ +|.+|.+=+-|-..|-.|- ...|..
T Consensus 340 gSL~RE~ir~~~-------------~~~sWd~Fne~L~~t~---------~gn~g~~g~~f~~~EIvP~---~~~G~~R~ 394 (545)
T KOG2531|consen 340 GSLTRERIRNES-------------ANGSWDKFNEILDSTP---------SGNNGNLGVYFPEREIVPS---VPKGTLRF 394 (545)
T ss_pred ChHHHHHHhhcc-------------cCCCHHHHHHHhccCc---------CCCCCceeEecccccccCC---CCccceEE
Confidence 887766666542 1357899998765432 4566653222223566661 122221
Q ss_pred --E---------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCcee
Q 012530 315 --C---------GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII 383 (461)
Q Consensus 315 --~---------Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~ 383 (461)
- ++....++.. -.||++||-++..|...+.|.-.-.++++|+++||.++|+...|++|||+|.||.
T Consensus 395 ~~~~~~~~~~~~~v~kf~~p~~---e~rAlvEgQ~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy 471 (545)
T KOG2531|consen 395 IFENKELSAERIEVAKFSDPEI---EARALVEGQFLSKRARAEPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVY 471 (545)
T ss_pred EecCCccchhhcccccCCCchH---HHHHHHHHhHhHhhhhhccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeE
Confidence 1 2223333444 3679999999999998887764334789999999999999999999999999999
Q ss_pred ecCCCCchhHHHHHHHHHhcc-----ccCCHHHHHH--Hh--hcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHH
Q 012530 384 LPRENESVLLGAAILGAVAAK-----RYSSLIEAMK--AM--NAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQ 449 (461)
Q Consensus 384 ~~~~~e~~alGaA~lA~~~~G-----~~~~~~~a~~--~~--~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~ 449 (461)
+.+..+++++|+|+-|+++.- .+-.+..-.. +. .+.+-.-+| ++++.+.|..+.++|+++.+.+
T Consensus 472 ~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~~~~~~~~~~p~~~~L~~~p--~~~~~e~Y~~ll~~~~e~e~~l 544 (545)
T KOG2531|consen 472 TIEGPNSAALGGAYRAAYALLGDSFGIFVPFSNKTNYLSLTPSKLELACEP--DSANWEIYGPLLKRLSELEDTL 544 (545)
T ss_pred eecCCchhhHHHHHHHHHHHHhccccccccceeeccccccCCccceeeecC--CcchHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998852 1100100000 00 012345677 7788888888888888776543
No 23
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=99.95 E-value=1.7e-28 Score=234.73 Aligned_cols=145 Identities=36% Similarity=0.606 Sum_probs=129.9
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++++.. +++++.||.++++.++++||+||++|+||.|+|+++|++++|||.|+|||+..+
T Consensus 99 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~dyl~~~LtG~~~~-------- 170 (245)
T PF00370_consen 99 MDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAAKFLTLSDYLAYKLTGRAAT-------- 170 (245)
T ss_dssp T-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHHEEEEHHHHHHHHHHSC-EE--------
T ss_pred cccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhhhcccHHHHHHhhccccccc--------
Confidence 5999999999999865 789999999999999999999999999999999999999999999999998754
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeec
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTS 158 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g 158 (461)
|.|+||.+++||+++++|++++++.+||+.. +||+ ++.+|+++| ++++++|+++||++|+||++|
T Consensus 171 -------d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~---~lP~----i~~~g~~~G-~~~~~~a~~~Gl~~~~pV~~g 235 (245)
T PF00370_consen 171 -------DYSNASRTGLYDIRTGQWDEELLEALGIPEE---LLPE----IVPPGEIIG-TLTPEAAKELGLPEGTPVIAG 235 (245)
T ss_dssp -------EHHHHCTSSSEETTTTEE-HHHHHHTTSGGG---GSCE----EE-TTSEEE-EEEHHHHHHHTSTTTEEEEEE
T ss_pred -------cccchhccccccccccccCHHHHHhhCCChh---hCCc----EecCCCeeE-EECHHHHHHhCCCCCCEEEEE
Confidence 4678899999999999999999999999986 3575 678899999 599999999999999999999
Q ss_pred hhhhhhhccC
Q 012530 159 LIDAHAGGVG 168 (461)
Q Consensus 159 ~~D~~aa~~g 168 (461)
+||++|+++|
T Consensus 236 ~~D~~aa~lG 245 (245)
T PF00370_consen 236 GGDQAAAALG 245 (245)
T ss_dssp EEHHHHHHHH
T ss_pred chHHHHhhcC
Confidence 9999999876
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.35 E-value=5.5e-07 Score=86.24 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=62.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-EEEEeccCCCCHHHHHHHHhhhCCceeecCCCC-chhH
Q 012530 316 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLL 393 (461)
Q Consensus 316 Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~-~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e-~~al 393 (461)
.+....++.+ +++++++++++++...+..+ .++ .|+++||+++|+.|.|.+++.+++||.+++..+ .+|+
T Consensus 172 ~l~~g~~~~d---i~~~~~~~va~~i~~~~~~~-----~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~Al 243 (248)
T TIGR00241 172 LLAAGVKKED---ILAGVYESIAERVAEMLQRL-----KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAV 243 (248)
T ss_pred HHHCCCCHHH---HHHHHHHHHHHHHHHHHhhc-----CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHH
Confidence 4555567788 46799999999999866443 244 799999999999999999999999999998875 8999
Q ss_pred HHHHH
Q 012530 394 GAAIL 398 (461)
Q Consensus 394 GaA~l 398 (461)
|||++
T Consensus 244 GaAl~ 248 (248)
T TIGR00241 244 GAALL 248 (248)
T ss_pred HHHhC
Confidence 99974
No 25
>PRK13317 pantothenate kinase; Provisional
Probab=97.90 E-value=0.00083 Score=65.16 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=103.0
Q ss_pred CeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHH
Q 012530 190 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL 269 (461)
Q Consensus 190 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (461)
..+.++.||...+..+... .+...+++..||..+.=+.+.+. +..+++.|
T Consensus 97 ~~~i~~iG~g~si~~~~g~------------------~~~r~~Gt~iGGgt~~gL~~lL~------------~~~~~~el 146 (277)
T PRK13317 97 DYIFTNIGTGTSIHYVDGN------------------SQRRVGGTGIGGGTIQGLSKLLT------------NISDYEQL 146 (277)
T ss_pred cEEEEEecCceEEEEEeCC------------------ceEEEccccccHHHHHHHHHHHh------------CCCCHHHH
Confidence 4688888888765444221 12333444445544433333331 23457777
Q ss_pred HHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 012530 270 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICG-----MTLDSSEKQLALLYLATVQGIAYGTRHI 344 (461)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~G-----l~~~~~~~~l~~~~rAvlEgia~~~~~~ 344 (461)
.+++.+-.. ..-+ +.+-.++|...+....+.+.+.|| +.....++|++ ++++..++..+..+
T Consensus 147 ~~la~~g~~---------~~~D-l~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIa---asl~~~v~~~I~~l 213 (277)
T PRK13317 147 IELAKHGDR---------NNID-LKVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDIL---AGVIGLVGEVITTL 213 (277)
T ss_pred HHHHhcCCC---------cccc-ceeccccCCCCCCCCCceeEehhhhhhhhhccCCCHHHHH---HHHHHHHHHHHHHH
Confidence 776543210 0111 223444443223345566777766 33455788965 59999998888766
Q ss_pred HHHHHhCCCCccEEEEec-cCCCCHHHHHHHHhhh---CCceeecCCCC-chhHHHHHHHH
Q 012530 345 VEHCNAHGHKIDTLLACG-GLAKNPLFLQQHADII---GCPIILPRENE-SVLLGAAILGA 400 (461)
Q Consensus 345 ~~~l~~~g~~~~~i~~~G-Gga~s~~w~Qi~Adv~---g~pV~~~~~~e-~~alGaA~lA~ 400 (461)
.-.+.+. ..+++|+++| |.++|+.+++.+.+.+ +..+..|+..+ .+|+|||++|.
T Consensus 214 A~~~ar~-~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 214 SIQAARE-KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHh-cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 4443332 2346899999 6899999999999998 78898887665 68999998864
No 26
>PRK13410 molecular chaperone DnaK; Provisional
Probab=97.18 E-value=0.0013 Score=71.73 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCCcee-ecCCCCchhHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAAI 397 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~-~~~~~e~~alGaA~ 397 (461)
+|.++..+...+++-+.-.++.. |++.|. .++.|.++||++|.|.+.+++.+++|.++. .....|+.|+|||+
T Consensus 296 tR~~FE~l~~~l~~r~~~~i~~~---L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi 372 (668)
T PRK13410 296 DRKQFESLCGDLLDRLLRPVKRA---LKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAI 372 (668)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHH
Confidence 56665544445555444333333 334444 578999999999999999999999998665 34667899999999
Q ss_pred HHHHhcccc
Q 012530 398 LGAVAAKRY 406 (461)
Q Consensus 398 lA~~~~G~~ 406 (461)
.|+.-.+..
T Consensus 373 ~aa~ls~~~ 381 (668)
T PRK13410 373 QAGILAGEL 381 (668)
T ss_pred HHHhhcccc
Confidence 999876643
No 27
>CHL00094 dnaK heat shock protein 70
Probab=97.09 E-value=0.0017 Score=70.42 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=49.9
Q ss_pred HHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCCceee-cCCCCchhHHHHHHHHHhccccCC
Q 012530 347 HCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGAVAAKRYSS 408 (461)
Q Consensus 347 ~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~-~~~~e~~alGaA~lA~~~~G~~~~ 408 (461)
.|++.+. .++.|.++||++|.|.+.+++++++|.++.. ....|+.|+|||+.|+...|.+++
T Consensus 318 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~ 383 (621)
T CHL00094 318 ALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKD 383 (621)
T ss_pred HHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccc
Confidence 3444444 5789999999999999999999999987754 355778999999999988775443
No 28
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.07 E-value=0.0018 Score=62.69 Aligned_cols=77 Identities=22% Similarity=0.306 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCcee-ecCC-CCchhHHH
Q 012530 318 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRE-NESVLLGA 395 (461)
Q Consensus 318 ~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~-~~~~-~e~~alGa 395 (461)
.....++|+ .+++.++|+-.+..+ +++.++ -+.|.++||.++|+.+.+.+.+.+|++|. +++. .-.+|+||
T Consensus 210 ~~G~~~edI---~aGl~~sia~rv~~~---~~~~~i-~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGA 282 (293)
T TIGR03192 210 KAGYTKNMV---IAAYCQAMAERVVSL---LERIGV-EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGA 282 (293)
T ss_pred HCCCCHHHH---HHHHHHHHHHHHHHH---hcccCC-CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHH
Confidence 445567885 458888888665433 333332 24689999999999999999999999998 4543 44789999
Q ss_pred HHHHHH
Q 012530 396 AILGAV 401 (461)
Q Consensus 396 A~lA~~ 401 (461)
|++|..
T Consensus 283 AL~A~~ 288 (293)
T TIGR03192 283 ALFGYT 288 (293)
T ss_pred HHHHHH
Confidence 999853
No 29
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.98 E-value=0.011 Score=58.59 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCccE-EEEeccCCCCHHHHHHHHhhhCCceeecCCCC-chhHH
Q 012530 318 TLDSSEKQLALLYLATVQGIAYGTRHIVE-HCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLG 394 (461)
Q Consensus 318 ~~~~~~~~l~~~~rAvlEgia~~~~~~~~-~l~~~g~~~~~-i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e-~~alG 394 (461)
....+.+++ .-++.++++-++ +. .+++ ..++. |++.||.++|......+.|.+|++|.+|+..+ .+|+|
T Consensus 312 ~~G~~~EdI---~AGl~~Sv~~~v---~~~~~~~--~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiG 383 (396)
T COG1924 312 AEGASPEDI---LAGLAYSVAENV---AEKVIKR--VDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIG 383 (396)
T ss_pred HcCCCHHHH---HHHHHHHHHHHH---HHHHhhc--cCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHH
Confidence 345566774 336666665544 33 2333 33433 99999999999999999999999999998655 58999
Q ss_pred HHHHHH
Q 012530 395 AAILGA 400 (461)
Q Consensus 395 aA~lA~ 400 (461)
||++|.
T Consensus 384 AAL~a~ 389 (396)
T COG1924 384 AALIAK 389 (396)
T ss_pred HHHHHh
Confidence 999875
No 30
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.85 E-value=0.0043 Score=67.55 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCC-ceeecCCCCchhHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAA 396 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~~~~e~~alGaA 396 (461)
-+|.++..+.+-+++-+.--++.+ |++.+. .++.|+++||.+|-|...+++.+.||. |+...+..|+.|+|||
T Consensus 320 ItR~efe~l~~~l~~r~~~~v~~~---L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAA 396 (657)
T PTZ00186 320 ISRSKFEGITQRLIERSIAPCKQC---MKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAA 396 (657)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHH---HHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHH
Confidence 356666555555555554444333 344443 578999999999999999999999987 5555667889999999
Q ss_pred HHHHHhccc
Q 012530 397 ILGAVAAKR 405 (461)
Q Consensus 397 ~lA~~~~G~ 405 (461)
+.|+.-.+.
T Consensus 397 i~a~~l~~~ 405 (657)
T PTZ00186 397 TLGGVLRGD 405 (657)
T ss_pred HHHHHhccc
Confidence 999876553
No 31
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.83 E-value=0.0031 Score=63.03 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh-----CCceeecCCCC-c
Q 012530 317 MTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-----GCPIILPRENE-S 390 (461)
Q Consensus 317 l~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-----g~pV~~~~~~e-~ 390 (461)
+....+++|++ .++..+|+-.+...+..+. ..-+.|.++||.++|+.+.+.+.+.+ +.+|.+++..+ .
T Consensus 350 la~G~~reDIa---AGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~ 423 (432)
T TIGR02259 350 LALGDKREDIL---AGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYT 423 (432)
T ss_pred HHCCCCHHHHH---HHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHH
Confidence 34556788854 5888888877665544432 22357999999999999999999999 57888887665 6
Q ss_pred hhHHHHHHH
Q 012530 391 VLLGAAILG 399 (461)
Q Consensus 391 ~alGaA~lA 399 (461)
+|+|||+.|
T Consensus 424 GALGAAL~a 432 (432)
T TIGR02259 424 GALGASEFA 432 (432)
T ss_pred HHHHHHHhC
Confidence 899999864
No 32
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.79 E-value=0.0047 Score=67.25 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceee-cCCCCchhHHHHHH
Q 012530 320 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAIL 398 (461)
Q Consensus 320 ~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~-~~~~e~~alGaA~l 398 (461)
.-+|.++-.+...+++-+.-.++..++...-....++.|.++||++|.|.+.+++.+.+|.++.. .+..++.|+|||+.
T Consensus 292 ~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~ 371 (627)
T PRK00290 292 KLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQ 371 (627)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHH
Confidence 34577765555555555444443333322111235789999999999999999999999988754 45678899999999
Q ss_pred HHHhccc
Q 012530 399 GAVAAKR 405 (461)
Q Consensus 399 A~~~~G~ 405 (461)
|+.-.|.
T Consensus 372 aa~l~~~ 378 (627)
T PRK00290 372 GGVLAGD 378 (627)
T ss_pred HHHhcCC
Confidence 9876653
No 33
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=96.63 E-value=0.0072 Score=65.51 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCCcee-ecCCCCchhHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAA 396 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~-~~~~~e~~alGaA 396 (461)
-+|.++..+..-+++-+.-.++.. |++.+. .++.|.++||++|.|...+++.+.+|.++. ..+..++.|+|||
T Consensus 295 itr~efe~l~~~l~~~~~~~i~~~---L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAA 371 (616)
T PRK05183 295 ITREQFNALIAPLVKRTLLACRRA---LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAA 371 (616)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHH
Confidence 356776555555555554443333 333333 578999999999999999999999997664 3456788999999
Q ss_pred HHHHHhccc
Q 012530 397 ILGAVAAKR 405 (461)
Q Consensus 397 ~lA~~~~G~ 405 (461)
+.|+.-.+.
T Consensus 372 i~a~~l~~~ 380 (616)
T PRK05183 372 IQADILAGN 380 (616)
T ss_pred HHHHHhccc
Confidence 999875543
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.57 E-value=0.007 Score=65.49 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCCceee-cCCCCchhHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI 397 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~-~~~~e~~alGaA~ 397 (461)
+|.++..+..-+++-+.--++.. |++.+. .++.|.++||.+|.|...+++.+.+|.++.. .+..|+.|+|||+
T Consensus 292 tr~~fe~l~~~l~~~~~~~i~~~---l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~ 368 (595)
T TIGR02350 292 TRAKFEELTADLVERTKEPVRQA---LKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAI 368 (595)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHH
Confidence 57776544445555443333333 333343 5789999999999999999999999977764 3567789999999
Q ss_pred HHHHhccc
Q 012530 398 LGAVAAKR 405 (461)
Q Consensus 398 lA~~~~G~ 405 (461)
.|+.-.+.
T Consensus 369 ~aa~l~~~ 376 (595)
T TIGR02350 369 QGGVLKGD 376 (595)
T ss_pred HHHHhcCC
Confidence 99876553
No 35
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.57 E-value=0.0062 Score=57.92 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC-CCchhHHHHH
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAI 397 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~alGaA~ 397 (461)
+.+.+++-+.-.+++.++ + .+++.|+++||+++.+.+.+.+.+.||.||.++.. .+++|+|+|+
T Consensus 174 ~i~~~~~~i~~~i~~~l~---~--~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 174 VVKPVYQKMASIVKRHIE---G--QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHH---h--CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 455667767666666655 2 35679999999999999999999999999988754 4578999886
No 36
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.57 E-value=0.0076 Score=58.30 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCC-CchhHHHHHH
Q 012530 325 QLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAIL 398 (461)
Q Consensus 325 ~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~alGaA~l 398 (461)
++..+.+..+|-+.-.+++.++. ..++.|+++||+++-+-+.+++.+.+|+||.++..+ ..+++|+|+.
T Consensus 197 ~~~~ii~~~~~~i~~~i~~~l~~-----~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~ 266 (267)
T PRK15080 197 EIFPVVKPVVEKMASIVARHIEG-----QDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALS 266 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhh
Confidence 33334556666666655555442 367899999999999999999999999999987765 4789999875
No 37
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.56 E-value=0.009 Score=60.29 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCC-chhHHHHH
Q 012530 319 LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAI 397 (461)
Q Consensus 319 ~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e-~~alGaA~ 397 (461)
...+++|++ .++..+|+-++... .+++.+. -+.|.++||.++|+.....+.+.+|.+|.+|+..+ .+|+|||+
T Consensus 326 ~G~~~eDIa---AGl~~SIa~rv~~~--l~~~~~i-~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL 399 (404)
T TIGR03286 326 EGASPEDVA---AAACHSVAEQVYEQ--QLQEIDV-REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAAL 399 (404)
T ss_pred CCCCHHHHH---HHHHHHHHHHHHHH--HhhcCCC-CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHH
Confidence 346688854 59988888776531 2233222 24599999999999999999999999999998766 57999999
Q ss_pred HH
Q 012530 398 LG 399 (461)
Q Consensus 398 lA 399 (461)
+|
T Consensus 400 ~A 401 (404)
T TIGR03286 400 LA 401 (404)
T ss_pred Hh
Confidence 87
No 38
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=96.55 E-value=0.0086 Score=64.76 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceee-cCCCCchhHHHHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILG 399 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~-~~~~e~~alGaA~lA 399 (461)
-+|.++..+..-+++-+.-.++..++...-....++.|.++||+++.|...+++.+.++.++.. .+..++.|+|||+.|
T Consensus 279 itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a 358 (599)
T TIGR01991 279 LTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQA 358 (599)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHH
Confidence 3577766555566665554444444322111235789999999999999999999999876653 456788999999999
Q ss_pred HHhcc
Q 012530 400 AVAAK 404 (461)
Q Consensus 400 ~~~~G 404 (461)
+.-.+
T Consensus 359 ~~l~~ 363 (599)
T TIGR01991 359 DLLAG 363 (599)
T ss_pred HHhcc
Confidence 87544
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.53 E-value=0.0055 Score=66.32 Aligned_cols=83 Identities=19% Similarity=0.299 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceee-cCCCCchhHHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGA 400 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~-~~~~e~~alGaA~lA~ 400 (461)
+|.++..+..-+++-+.-.+..+++.......+++.|.++||++|.|...+++.+.++.++.. .+..++.|+|||+.|+
T Consensus 296 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 296 TREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHH
T ss_pred ccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchh
Confidence 467765555555555544444444332211235789999999999999999999999987765 3567788999999998
Q ss_pred Hhcc
Q 012530 401 VAAK 404 (461)
Q Consensus 401 ~~~G 404 (461)
.-.+
T Consensus 376 ~~~~ 379 (602)
T PF00012_consen 376 ILSG 379 (602)
T ss_dssp HHHT
T ss_pred hhcc
Confidence 7655
No 40
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.49 E-value=0.14 Score=49.61 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=97.6
Q ss_pred eEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHH
Q 012530 191 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 270 (461)
Q Consensus 191 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (461)
.+.+++||...+..+..+ .+...+++.-||..+-=+...+. +..+|+.|.
T Consensus 103 ~llvnIGsGvSi~~v~~~------------------~~~Rv~Gt~iGGGTf~GL~~LL~------------~~~~~~el~ 152 (279)
T TIGR00555 103 YLLVNIGTGTSILYVDGD------------------NYERVGGTSLGGGTFLGLGKLLT------------GIQTFDELL 152 (279)
T ss_pred eEEEEecCCeEEEEEcCc------------------cEEEEcCccccHHHHHHHHHHHc------------CCCCHHHHH
Confidence 588888988665443221 23333444455544433444432 235677777
Q ss_pred HHHHhhhhhcCCCcccCCCCCeEEccCCCCCC--CCCCCCCCceeEEc-C-----CCCCCHHHHHHHHHHHHHHHHHHHH
Q 012530 271 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICG-M-----TLDSSEKQLALLYLATVQGIAYGTR 342 (461)
Q Consensus 271 ~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger--~P~~d~~a~g~~~G-l-----~~~~~~~~l~~~~rAvlEgia~~~~ 342 (461)
+++++-.. ..-. +.+.+++|.. .+-.+.+..++-+| + ...-+++|++ ++++..|+..+-
T Consensus 153 ~lA~~G~~---------~~vD-l~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiA---aSLl~mV~~nIg 219 (279)
T TIGR00555 153 EMAQHGDR---------TNVD-LLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIA---ASLLGLIGNNIG 219 (279)
T ss_pred HHHHcCCC---------cccc-cccccccCCCCCCCCCCcceeeeccchhhccccccCCCHHHHH---HHHHHHHHHHHH
Confidence 76653210 0111 2344555521 12234566777777 3 2344689965 599999999776
Q ss_pred HHHHHHHhCCCCccEEEEecc-CCCCHHHHHHHHhhhC---CceeecCCCC-chhHHHHH
Q 012530 343 HIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIG---CPIILPRENE-SVLLGAAI 397 (461)
Q Consensus 343 ~~~~~l~~~g~~~~~i~~~GG-ga~s~~w~Qi~Adv~g---~pV~~~~~~e-~~alGaA~ 397 (461)
++-- +...-...++|+..|| ...++..++.++..++ ..+..|+..+ .+|+|||+
T Consensus 220 ~lA~-~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 220 QIAY-LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHH-HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 5443 3222245678999999 6689999999998874 5566776555 47899985
No 41
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.40 E-value=0.013 Score=63.08 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceee-cCCCCchhHHHHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILG 399 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~-~~~~e~~alGaA~lA 399 (461)
-+|.++..+.+-+++-+.--++..++... ...++.|.++||.+|.|...+++.+.+|+++.. .+..++.|+|||+.|
T Consensus 277 itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a 354 (595)
T PRK01433 277 INKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQA 354 (595)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHH
Confidence 35777665555555555444444443322 245899999999999999999999999988765 356788999999999
Q ss_pred HHhcc
Q 012530 400 AVAAK 404 (461)
Q Consensus 400 ~~~~G 404 (461)
+.-.+
T Consensus 355 ~~l~~ 359 (595)
T PRK01433 355 ENLIA 359 (595)
T ss_pred HHhhC
Confidence 87433
No 42
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.28 E-value=0.014 Score=55.73 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhC-Cc----eeecCCC-Cch
Q 012530 318 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CP----IILPREN-ESV 391 (461)
Q Consensus 318 ~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g-~p----V~~~~~~-e~~ 391 (461)
.....++++ ..++..+|+-.+...+. +.+...++|.++||.++|+.+.+.+.+.++ .+ |.+++.. -.+
T Consensus 181 ~~G~~~edI---~aGl~~sia~r~~~~~~---~~~~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~g 254 (262)
T TIGR02261 181 SRGISAPNI---LKGIHESMADRLAKLLK---SLGALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAG 254 (262)
T ss_pred HCCCCHHHH---HHHHHHHHHHHHHHHHh---ccCCCCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHH
Confidence 345568885 45888888876644444 333333569999999999999999999883 23 3333333 368
Q ss_pred hHHHHHHH
Q 012530 392 LLGAAILG 399 (461)
Q Consensus 392 alGaA~lA 399 (461)
|+|||++|
T Consensus 255 AlGAAl~~ 262 (262)
T TIGR02261 255 AIGAALWG 262 (262)
T ss_pred HHHHHHcC
Confidence 99999864
No 43
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=96.27 E-value=0.011 Score=59.13 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CCcc-EEEEeccCCCCHHHHHHHHhhhCCceeecC-CCCchhHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HG-HKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 397 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g-~~~~-~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaA~ 397 (461)
++.++..+....++.+.-.++..++.... .. ..++ .|+++||+++-+.+.+++.+.++.||.+.. ..++.|+|||+
T Consensus 240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~ 319 (336)
T PRK13928 240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGK 319 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 45665555666667676666666665431 11 1244 699999999999999999999999998875 56678999999
Q ss_pred HHHH
Q 012530 398 LGAV 401 (461)
Q Consensus 398 lA~~ 401 (461)
.+..
T Consensus 320 ~~~~ 323 (336)
T PRK13928 320 MLEN 323 (336)
T ss_pred HHhc
Confidence 8755
No 44
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=96.18 E-value=0.013 Score=64.09 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCCceee-cCCCCchhHHH
Q 012530 320 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGA 395 (461)
Q Consensus 320 ~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~-~~~~e~~alGa 395 (461)
.-+|.++..+..-+++-+.-.+.. .|++.+. .++.|.++||.++.|...+++.+.+|.++.. .+..++.|+||
T Consensus 333 ~itR~efe~l~~~l~~~~~~~i~~---~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GA 409 (663)
T PTZ00400 333 KLSRAKLEELTHDLLKKTIEPCEK---CIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGA 409 (663)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeecc
Confidence 335777654444444444333333 3344443 4789999999999999999999999987753 45678899999
Q ss_pred HHHHHHhccc
Q 012530 396 AILGAVAAKR 405 (461)
Q Consensus 396 A~lA~~~~G~ 405 (461)
|+.|+.-.+.
T Consensus 410 Ai~aa~l~~~ 419 (663)
T PTZ00400 410 AIQAGVLKGE 419 (663)
T ss_pred HHHHHhhcCC
Confidence 9999876553
No 45
>PLN03184 chloroplast Hsp70; Provisional
Probab=96.18 E-value=0.017 Score=63.30 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCCceee-cCCCCchhHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA 396 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~-~~~~e~~alGaA 396 (461)
-+|.++..+..-+++-+.--+.. .|++.+. .++.|.++||.+|.|...+++.+.+|.++.. .+..|+.|+|||
T Consensus 332 itR~~fe~l~~~l~~r~~~~i~~---~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAA 408 (673)
T PLN03184 332 LTRAKFEELCSDLLDRCKTPVEN---ALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAA 408 (673)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHH---HHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHH
Confidence 35666543333333333322222 3344443 4789999999999999999999999987654 467888999999
Q ss_pred HHHHHhccc
Q 012530 397 ILGAVAAKR 405 (461)
Q Consensus 397 ~lA~~~~G~ 405 (461)
+.|+.-.+.
T Consensus 409 i~aa~ls~~ 417 (673)
T PLN03184 409 VQAGVLAGE 417 (673)
T ss_pred HHHHHhccC
Confidence 999876553
No 46
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.99 E-value=0.021 Score=62.49 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhC-Cce-eecCCCCchhHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPI-ILPRENESVLLGA 395 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g-~pV-~~~~~~e~~alGa 395 (461)
-+|.++-.+..-+++-+.-.+..+ |++.+. .++.|.++||.+|.|...+++.+.++ .++ ...+..|+.|+||
T Consensus 299 itR~~fe~l~~~l~~~~~~~i~~~---L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GA 375 (653)
T PTZ00009 299 ISRARFEELCGDYFRNTLQPVEKV---LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGA 375 (653)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhh
Confidence 356665544444444444333333 333343 47899999999999999999999996 455 4556788999999
Q ss_pred HHHHHHhcc
Q 012530 396 AILGAVAAK 404 (461)
Q Consensus 396 A~lA~~~~G 404 (461)
|+.|+.-.+
T Consensus 376 a~~aa~ls~ 384 (653)
T PTZ00009 376 AVQAAILTG 384 (653)
T ss_pred hhhHHHhcC
Confidence 999987554
No 47
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.78 E-value=0.025 Score=61.77 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---ccEEEEeccCCCCHHHHHHHHhhhC-Cceee-cCCCCchhHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK---IDTLLACGGLAKNPLFLQQHADIIG-CPIIL-PRENESVLLGA 395 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~---~~~i~~~GGga~s~~w~Qi~Adv~g-~pV~~-~~~~e~~alGa 395 (461)
-+|.++..+..-+++-+.--+.. .|++.+.. ++.|.++||.+|.|...+++.+.++ .++.. .+..++.|+||
T Consensus 294 itR~~fe~l~~~l~~~~~~~i~~---~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GA 370 (653)
T PRK13411 294 LTRAKFEELTKDLVEATIEPMQQ---ALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGA 370 (653)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHH
Confidence 35666554444444443333322 34444543 7899999999999999999999996 55543 46678899999
Q ss_pred HHHHHHhccc
Q 012530 396 AILGAVAAKR 405 (461)
Q Consensus 396 A~lA~~~~G~ 405 (461)
|+.|+.-.+.
T Consensus 371 Ai~aa~l~~~ 380 (653)
T PRK13411 371 AIQAGVLGGE 380 (653)
T ss_pred HHHHHhhcCC
Confidence 9999876553
No 48
>PRK11678 putative chaperone; Provisional
Probab=95.77 E-value=0.058 Score=56.15 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhC-CceeecCCCCchhHHH
Q 012530 317 MTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPRENESVLLGA 395 (461)
Q Consensus 317 l~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g-~pV~~~~~~e~~alGa 395 (461)
+...-++.++..+++..++-+.--+++ .+++.+..++.|+++||.++.|...+++.+.++ .||...+.-++.|.|+
T Consensus 365 ~~~~ItR~efe~ii~~~l~ri~~~i~~---~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gl 441 (450)
T PRK11678 365 LATEISQQGLEEAISQPLARILELVQL---ALDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGL 441 (450)
T ss_pred cceeeCHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHH
Confidence 344456788765455554444433333 334456778999999999999999999999995 6888888888899999
Q ss_pred HHHHHH
Q 012530 396 AILGAV 401 (461)
Q Consensus 396 A~lA~~ 401 (461)
|+.|..
T Consensus 442 a~~a~~ 447 (450)
T PRK11678 442 ARWAQV 447 (450)
T ss_pred HHHHHh
Confidence 998754
No 49
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.14 Score=50.74 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh-CCcee
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPII 383 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~ 383 (461)
+.+|. .+...|-.|-.+-..+. -....++++.|||||.+|+++|+-+|..+ |.+|.
T Consensus 264 ~a~Dv---~aTL~eltA~tIv~s~~---~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~ 320 (371)
T COG2377 264 NAEDV---QATLVELTAATIVKSVA---TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVA 320 (371)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHh---hccCCCceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence 45664 45777766655544443 22356889999999999999999999999 54554
No 50
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=95.37 E-value=0.04 Score=55.02 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC-c-cEEEEeccCCCCHHHHHHHHhhhCCceeecC-CCCchhHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHK-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 397 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~-~-~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaA~ 397 (461)
++.++..+++..++.+.-.++..++..... ... . +.|+++||+++.+.+.+.+.+.++.||.+.. ..++.|+|||+
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK 320 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence 455555555666666666666666544210 011 2 3599999999999999999999999999875 45678999999
Q ss_pred HHHH
Q 012530 398 LGAV 401 (461)
Q Consensus 398 lA~~ 401 (461)
.+..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 8765
No 51
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=95.12 E-value=0.045 Score=54.66 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCccE-EEEeccCCCCHHHHHHHHhhhCCceeecC-CCCchhHHHHHH
Q 012530 323 EKQLALLYLATVQGIAYGTRHIVEHCNAH-G-HKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 398 (461)
Q Consensus 323 ~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g-~~~~~-i~~~GGga~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaA~l 398 (461)
+.++..++...++.+.-.++..++..... . ...++ |+++||+++-+.+.+.+++.++.||.+.. ..++.++|||+.
T Consensus 246 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~ 325 (335)
T PRK13930 246 SEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKA 325 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence 45554445556666666665555543210 0 11244 99999999999999999999999999875 455778999998
Q ss_pred HHH
Q 012530 399 GAV 401 (461)
Q Consensus 399 A~~ 401 (461)
+..
T Consensus 326 ~~~ 328 (335)
T PRK13930 326 LEN 328 (335)
T ss_pred HhC
Confidence 753
No 52
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=94.87 E-value=0.12 Score=52.06 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecC
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 386 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~ 386 (461)
.+++|+ .+-+.|-.|.++.+.+..+. .++++|+++|||++|+.+++.+...+..+|...+
T Consensus 259 ~s~~D~---~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~ 318 (365)
T PRK09585 259 LSPEDV---QATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTD 318 (365)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHH
Confidence 356774 45888888888877776543 2356899999999999999999999875666543
No 53
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=94.77 E-value=0.085 Score=52.70 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC-c-cEEEEeccCCCCHHHHHHHHhhhCCceeecC-CCCchhHHHHHH
Q 012530 323 EKQLALLYLATVQGIAYGTRHIVEHCNAH-GHK-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 398 (461)
Q Consensus 323 ~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~-~-~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaA~l 398 (461)
+.++..++...++.+.-.++..++..... ... . +.|+++||+++-|.+.+.+++.++.||.+.. ..++.|+||+++
T Consensus 245 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~ 324 (333)
T TIGR00904 245 SVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKA 324 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHH
Confidence 34444344555555555555555543211 111 2 3699999999999999999999999999875 566789999988
Q ss_pred HHH
Q 012530 399 GAV 401 (461)
Q Consensus 399 A~~ 401 (461)
+..
T Consensus 325 ~~~ 327 (333)
T TIGR00904 325 LED 327 (333)
T ss_pred HhC
Confidence 643
No 54
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.12 Score=54.99 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeec-CCCCchhHHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 400 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~ 400 (461)
+|.++-.+.-.+++=+-.-+...++...-.+-.+..|=++||++|.|..-+++++.+|++..++ ...|+.|+|||+-++
T Consensus 301 ~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcA 380 (727)
T KOG0103|consen 301 KREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCA 380 (727)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHH
Confidence 4565555556677766655555555432223456688999999999999999999999999754 668899999999877
Q ss_pred Hhc
Q 012530 401 VAA 403 (461)
Q Consensus 401 ~~~ 403 (461)
.-.
T Consensus 381 IlS 383 (727)
T KOG0103|consen 381 ILS 383 (727)
T ss_pred hcC
Confidence 643
No 55
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=94.42 E-value=0.22 Score=50.19 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhC-CceeecCCC----C-chhHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPREN----E-SVLLGA 395 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g-~pV~~~~~~----e-~~alGa 395 (461)
+++|+ .+-+.|-.|.++.+.++.+. .++++|+++|||++|+.+++.+...+. .+|...+.- + --|+.=
T Consensus 258 ~~~D~---~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF 331 (364)
T PF03702_consen 258 SPEDI---LATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF 331 (364)
T ss_dssp -HHHH---HHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH
T ss_pred ChHHH---HHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH
Confidence 47784 56888988888877777664 347899999999999999999998875 488765421 1 135666
Q ss_pred HHHHHHhc
Q 012530 396 AILGAVAA 403 (461)
Q Consensus 396 A~lA~~~~ 403 (461)
|+||...+
T Consensus 332 A~La~~~~ 339 (364)
T PF03702_consen 332 AWLAYRRL 339 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 56
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=94.31 E-value=0.088 Score=52.71 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=38.0
Q ss_pred cc-EEEEeccCCCCHHHHHHHHhhhCCceeec-CCCCchhHHHHHH
Q 012530 355 ID-TLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAIL 398 (461)
Q Consensus 355 ~~-~i~~~GGga~s~~w~Qi~Adv~g~pV~~~-~~~e~~alGaA~l 398 (461)
++ .|+++||+|+-+-+.+.+.+.+++||.+. +..++.++|++..
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 44 59999999999999999999999999986 4456778899876
No 57
>PLN02920 pantothenate kinase 1
Probab=94.15 E-value=2.5 Score=42.80 Aligned_cols=167 Identities=11% Similarity=0.027 Sum_probs=98.6
Q ss_pred CeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHH
Q 012530 190 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL 269 (461)
Q Consensus 190 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (461)
..+++++||...+..+.. ++.|-..+++.-||..+-=+...+. +...|++|
T Consensus 166 PyLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sfdEl 216 (398)
T PLN02920 166 PYLLVNIGSGVSMIKVDG-----------------DGKFERVSGTSVGGGTFWGLGKLLT------------KCKSFDEL 216 (398)
T ss_pred ceEEEEcCCCEEEEEEeC-----------------CCcEEEEcccccchHhHHHHHHHHc------------CCCCHHHH
Confidence 368888888765543322 2334555666666666554555443 23567777
Q ss_pred HHHHHhhhhhcCCCcccCCCCCeEEccCCCCCC---CCCCCCCCceeEEc--CCC-----CCCHHHHHHHHHHHHHHHHH
Q 012530 270 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MTL-----DSSEKQLALLYLATVQGIAY 339 (461)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger---~P~~d~~a~g~~~G--l~~-----~~~~~~l~~~~rAvlEgia~ 339 (461)
.+++++-.. .+-=+.+-.+.|.. .|-.+.+..++-|| ... +.+++|+ .|+++--|++
T Consensus 217 l~lA~~Gd~----------~nvDllVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDi---a~SLL~mVs~ 283 (398)
T PLN02920 217 LELSHQGNN----------RVIDMLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDV---ARSLLRMISN 283 (398)
T ss_pred HHHHhCCCc----------cccCceeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHH---HHHHHHHHHH
Confidence 766543110 11113456666632 23345677778777 332 2358885 4699999999
Q ss_pred HHHHHHHHHHhCCCCccEEEEeccCCCCH-HHHHHHHhhh------CCceeecCCCC-chhHHHHHHH
Q 012530 340 GTRHIVEHCNAHGHKIDTLLACGGLAKNP-LFLQQHADII------GCPIILPRENE-SVLLGAAILG 399 (461)
Q Consensus 340 ~~~~~~~~l~~~g~~~~~i~~~GGga~s~-~w~Qi~Adv~------g~pV~~~~~~e-~~alGaA~lA 399 (461)
++-++--...+ -..+++|+.+|+..+++ ..++.++-.. ++....++..+ .+|+||++..
T Consensus 284 nIgqiA~L~A~-~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 284 NIGQISYLNAL-RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred HHHHHHHHHHH-HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 99776433322 34678999999999887 6666555443 23333444333 5789987643
No 58
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=93.68 E-value=0.12 Score=51.88 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecC
Q 012530 329 LYLATVQGIAYGTRHIVEHCNA--HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 386 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~--~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~ 386 (461)
.++.+++-++-++++.++.+.. .+.++++|+++||+++.+-+.+.+++.||.||.+.+
T Consensus 247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 4578999999999999997654 367899999999999999999999999999999865
No 59
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.38 E-value=0.38 Score=49.74 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCC---CCccEEEEeccCCCCHHHHHHHHhhhCCceeecC
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHC----NAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 386 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l----~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~ 386 (461)
++.++..+.++-+|-|.-.+++.++.+ .+.+ ..++.|+++||+|+-+-+.+++.++|++||.+..
T Consensus 289 ~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~ 360 (420)
T PRK09472 289 QRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA 360 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeC
Confidence 356666677888888877777777544 3333 3467899999999999999999999999999753
No 60
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=92.30 E-value=1.3 Score=44.27 Aligned_cols=166 Identities=12% Similarity=0.115 Sum_probs=93.3
Q ss_pred CeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHH
Q 012530 190 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL 269 (461)
Q Consensus 190 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (461)
..+.+++||...+..+.. ++.|-..+++.-||..+-=+...+.. ...|+.+
T Consensus 157 PyllvniGsGvSi~~v~~-----------------~~~~~rvgGs~iGGgT~~GL~~llt~------------~~~~~e~ 207 (341)
T PF03630_consen 157 PYLLVNIGSGVSILKVEG-----------------PNQFERVGGSSIGGGTFWGLCSLLTG------------CKSFDEI 207 (341)
T ss_dssp SEEEEEESSSEEEEEEEE-----------------TTEEEEEEEES-SHHHHHHHHHHHH---------------SHHHH
T ss_pred cEEEEEcCCceEEEEEeC-----------------CCceEEEeccccchHhHHHHHHHhcC------------CCCHHHH
Confidence 478889998765543322 23455556666677665555554421 2457777
Q ss_pred HHHHHhhhhhcCCCcccCCCCCeEEccCCCCCC--CCCCCCCCceeEEcCCC-------CCCHHHHHHHHHHHHHHHHHH
Q 012530 270 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICGMTL-------DSSEKQLALLYLATVQGIAYG 340 (461)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger--~P~~d~~a~g~~~Gl~~-------~~~~~~l~~~~rAvlEgia~~ 340 (461)
.+++++-.. .+-=+.+.++.|.. .+-...+..++-+|--. ..+++|+ .|+++--|+++
T Consensus 208 ~~la~~G~~----------~~vDllV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Di---a~sll~mv~~n 274 (341)
T PF03630_consen 208 LELAKKGDN----------SNVDLLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDI---AKSLLNMVSNN 274 (341)
T ss_dssp HHHHHH--G----------GGTSEEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHH---HHHHHHHHHHH
T ss_pred HHHhcCCCc----------cccCceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHH---HHHHHHHHHHH
Confidence 666543211 11113455566555 22344667777776322 2357885 46999999999
Q ss_pred HHHHHHHHHhCCCCccEEEEeccCCC-CHHHHHHHH---hhh---CCceeecCC-CCchhHHHHHH
Q 012530 341 TRHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHA---DII---GCPIILPRE-NESVLLGAAIL 398 (461)
Q Consensus 341 ~~~~~~~l~~~g~~~~~i~~~GGga~-s~~w~Qi~A---dv~---g~pV~~~~~-~e~~alGaA~l 398 (461)
+.++.-...+. ..+++|+++|...+ ++..++.++ +-. .+....++. .=.+|+||.+.
T Consensus 275 Ig~la~l~A~~-~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 275 IGQLAYLHAKI-HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HHHHHHHHHHH-HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 98765443332 34689999999886 577888888 443 233344443 33688998764
No 61
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.09 E-value=0.85 Score=44.00 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHH-----HhhhCCceeecCC-CCchhHHHHHHH
Q 012530 331 LATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQH-----ADIIGCPIILPRE-NESVLLGAAILG 399 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~-----Adv~g~pV~~~~~-~e~~alGaA~lA 399 (461)
+.|++..+..+...+..+.+. +.....|.++||.++|+.+.+-+ -.+...|+.++.. ...+++|||++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 367777777777777766543 32223399999999997766544 4555667776654 445789999987
No 62
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=91.73 E-value=0.41 Score=48.55 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CccE-EEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 320 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH--KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 320 ~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~--~~~~-i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
.-++.++..+.++.++-+.-.++ -+.+++.+. .++. |+++||+++.+...+++.+.|+.||++...
T Consensus 279 ~is~~~l~~ii~~~~~ei~~~i~--~~~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 279 SLSRKELAEIIEARAEEILEIVK--QKELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 33566665544555554444443 034444443 3455 999999999999999999999999998754
No 63
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=0.68 Score=49.87 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=47.1
Q ss_pred CCccEEEEeccCCCCHHHHHHHHhhhCCcee-ecCCCCchhHHHHHHHHHhccccC
Q 012530 353 HKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAAILGAVAAKRYS 407 (461)
Q Consensus 353 ~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~-~~~~~e~~alGaA~lA~~~~G~~~ 407 (461)
..++.|.++||.+|-|...+.+++.++.++. -+...|+.|+|||+.|+.-.|..+
T Consensus 308 ~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 308 SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP 363 (579)
T ss_pred hhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc
Confidence 3578999999999999999999999996655 456788999999999998777643
No 64
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=91.57 E-value=0.46 Score=47.63 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAH--GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~--g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
..|.++|-++-+++..++.+... +..++.|+++||+++-+-+...++..||.||++.+.
T Consensus 255 ~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P 315 (348)
T TIGR01175 255 VLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANP 315 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecCh
Confidence 35688999999999999877542 456899999999999999999999999999998653
No 65
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=91.34 E-value=1.1 Score=45.39 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccE-EEEeccCCCCHHHHHHHHhhhCC-ceeecC--CCCchhHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGC-PIILPR--ENESVLLGAA 396 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~-i~~~GGga~s~~w~Qi~Adv~g~-pV~~~~--~~e~~alGaA 396 (461)
....|++.-++..+|-+...+...+ +++.| .++ |.++||.+-|-.+++-+++-.+. .|.++. .+++.++|||
T Consensus 133 ~~~~dlAa~~Q~~~E~~v~~~~~~~--~~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA 208 (360)
T PF02543_consen 133 QRHADLAASAQKVLEEIVLHLVRHL--LERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAA 208 (360)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHH--HHHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH--HHHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHH
Confidence 3467888878888998887664332 22333 445 99999999999999999998655 477765 3557899999
Q ss_pred HHHHHhccc
Q 012530 397 ILGAVAAKR 405 (461)
Q Consensus 397 ~lA~~~~G~ 405 (461)
+.+....+.
T Consensus 209 ~~~~~~~~~ 217 (360)
T PF02543_consen 209 LYAWHELGG 217 (360)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhcC
Confidence 999877664
No 66
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=90.18 E-value=0.77 Score=44.55 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecc--CCCCH-HHHHHHHhhhCCceeecCCCCchhHHHHHHHHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG--LAKNP-LFLQQHADIIGCPIILPRENESVLLGAAILGAV 401 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG--ga~s~-~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~ 401 (461)
++++.|+++.++..++-. + .+...|+++|. .++.+ .+...+.+.|+.+|.+... +.+|.|+|++|--
T Consensus 242 ~dal~~~vameIasLl~l--~--~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~AiIA~d 311 (326)
T TIGR03281 242 LDSLAMSVAMEIASLGLL--D--CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLALIAED 311 (326)
T ss_pred HHHHHHHHHHHHHhheec--c--CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHHHHHH
Confidence 578899998888655433 2 23348999997 77888 9999999999999999865 7789999999853
No 67
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=1 Score=47.12 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHH-HHHHhhhCCceeecC--CCCchhHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHADIIGCPIILPR--ENESVLLGAAIL 398 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~-Qi~Adv~g~pV~~~~--~~e~~alGaA~l 398 (461)
...+++...++.+|-+...+.+.+..- .| ..+|.+.||.+.|-.|+ +++...++..|.|.. .+.+.|+|||+.
T Consensus 257 ~~~diAasaQ~~lE~l~l~~~~~~~~~--~g--~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~ 332 (555)
T COG2192 257 RAADIAASAQAYLEELVLEMLRYLREE--TG--EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALA 332 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--hC--ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHH
Confidence 456777778899999998775544332 22 67899999999999999 899999998998865 355679999999
Q ss_pred HHHhccc
Q 012530 399 GAVAAKR 405 (461)
Q Consensus 399 A~~~~G~ 405 (461)
+....+.
T Consensus 333 ~~~~~~~ 339 (555)
T COG2192 333 VKRELGG 339 (555)
T ss_pred HHHHhcC
Confidence 9877654
No 68
>PRK09604 UGMP family protein; Validated
Probab=89.81 E-value=0.97 Score=45.18 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecCC----CCchhHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE----NESVLLG 394 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~~----~e~~alG 394 (461)
++.+++ +++.+.++-.+.+.++...+. ..+++|.++||.+.|..+++.+.+.+ |.+|.+++. +.+.++|
T Consensus 226 ~~~~iA---~s~q~~l~~~l~~~~~~~~~~-~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg 301 (332)
T PRK09604 226 TKADIA---ASFQAAVVDVLVIKTKRALKQ-TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIA 301 (332)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHH-hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHH
Confidence 355654 477777777666666655442 34678999999999999999999998 788887653 3344566
Q ss_pred HHHHHHHhccc
Q 012530 395 AAILGAVAAKR 405 (461)
Q Consensus 395 aA~lA~~~~G~ 405 (461)
+|-+-..-.|.
T Consensus 302 ~ag~~~~~~g~ 312 (332)
T PRK09604 302 AAGYERLKAGE 312 (332)
T ss_pred HHHHHHHHcCC
Confidence 65444444453
No 69
>PRK14878 UGMP family protein; Provisional
Probab=89.40 E-value=1.4 Score=43.84 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecCCCCchhHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAI 397 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~~~e~~alGaA~ 397 (461)
++.+++ +++.+.++-.+-.......+. ..+++|.++||.+.|..+++.+.+.+ |.+|.+++..-++--|+++
T Consensus 213 ~~~diA---a~fq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 213 RLEDVC---YSLRETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 345654 477777777766666655442 23678999999999999999999987 8888887643334334333
No 70
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=1.1 Score=44.97 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCccEEEEeccCCCCHHHHHHHHhhh-CCce-eecCCCCchhHHHHHHHHHhccc
Q 012530 353 HKIDTLLACGGLAKNPLFLQQHADII-GCPI-ILPRENESVLLGAAILGAVAAKR 405 (461)
Q Consensus 353 ~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV-~~~~~~e~~alGaA~lA~~~~G~ 405 (461)
-.++.|+++||.+|-|-..|++-|.| |+.- .-....|+.|.|||.-|++-.|.
T Consensus 361 sdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 361 SDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred ccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc
Confidence 35889999999999999999999999 5444 44467889999999999987775
No 71
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=89.03 E-value=0.39 Score=47.70 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=34.5
Q ss_pred cEEEEeccCCCCHHHHHHHHhhhCCceeecCCCC-chhHHHHHH
Q 012530 356 DTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAIL 398 (461)
Q Consensus 356 ~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e-~~alGaA~l 398 (461)
+-|+++||+|+-+-+-+.+++-+++||.+.+.++ +.+.|+..+
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~ 318 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKL 318 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHH
Confidence 3599999999999999999999999999987655 567787654
No 72
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=87.52 E-value=1.4 Score=43.68 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhh----hCCceeecCC----CCchhHHHHHHH-H
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADI----IGCPIILPRE----NESVLLGAAILG-A 400 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv----~g~pV~~~~~----~e~~alGaA~lA-~ 400 (461)
+.+.+|+++-.+...+-. -.+++.|+++|..++++.+..-+.+. ++.+|..... ...+|.|+|++| +
T Consensus 240 ~ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 240 WEAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhh
Confidence 568899888777643332 23577899999999998887655544 4556665433 234789999998 4
Q ss_pred HhccccCCH
Q 012530 401 VAAKRYSSL 409 (461)
Q Consensus 401 ~~~G~~~~~ 409 (461)
.+-|.|+.+
T Consensus 316 laGG~~~~l 324 (343)
T PF07318_consen 316 LAGGRYKEL 324 (343)
T ss_pred hhcccHHHH
Confidence 555665544
No 73
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=86.48 E-value=1.4 Score=48.54 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhC---CceeecC----CCCchhHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG---CPIILPR----ENESVLLG 394 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g---~pV~~~~----~~e~~alG 394 (461)
++.+++ +++.+.++-.+...++.+.+. ..+++|.++||.++|..+++.+.+.++ ..|..++ .+.+.++|
T Consensus 630 ~~~~IA---a~fh~tla~~L~~~a~~~~~~-~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislG 705 (711)
T TIGR00143 630 DRSKIA---HIAHKFVASGLVEIATAIAVP-FGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLG 705 (711)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHH
Confidence 456644 477777777676666665442 246789999999999999999988774 6776543 24456788
Q ss_pred HHHHH
Q 012530 395 AAILG 399 (461)
Q Consensus 395 aA~lA 399 (461)
.|+.|
T Consensus 706 Qa~~a 710 (711)
T TIGR00143 706 QAVAA 710 (711)
T ss_pred HHHHh
Confidence 87765
No 74
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.21 E-value=2.1 Score=45.76 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceee--cCCCCchhHHHHHHHHHhcccc
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL--PRENESVLLGAAILGAVAAKRY 406 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~--~~~~e~~alGaA~lA~~~~G~~ 406 (461)
++|..+|-+. .++.........+..|+++||-++-|...+++.|.++-.-.. ....|+.|+|||+-|+.-.|..
T Consensus 313 lf~~~~~~v~----~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~ 388 (620)
T KOG0101|consen 313 LFRSTLEPVE----KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDK 388 (620)
T ss_pred HHHHHHHHHH----HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCc
Confidence 4566666665 222222222456899999999999999999999999643322 2467899999999999877753
No 75
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=84.09 E-value=4.9 Score=40.23 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecCC
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE 387 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~~ 387 (461)
+.+++.|.++-.+...++..-+. ..+++|.++||.+.|..+++.+.+++ |.++..|+.
T Consensus 239 iaasfq~~v~~~L~~k~~~a~~~-~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~ 299 (345)
T PTZ00340 239 LCFSLQETIFAMLVEVTERAMSH-CGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDE 299 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCCh
Confidence 44577777776665554433321 34678999999999999999999886 788888753
No 76
>PLN02902 pantothenate kinase
Probab=83.99 E-value=30 Score=38.68 Aligned_cols=166 Identities=11% Similarity=0.058 Sum_probs=96.7
Q ss_pred eEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHH
Q 012530 191 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 270 (461)
Q Consensus 191 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (461)
.+.+++||+..+..+.. ++.|-..+++.-||..+-=+...+. +...|+.|-
T Consensus 216 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sFdEll 266 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTNVGGGTYWGLGRLLT------------KCKSFDELL 266 (876)
T ss_pred eEEEEcCCceEEEEEec-----------------CCcEEEecccccccHhHHHHHHHHc------------CCCCHHHHH
Confidence 46777777654433221 2345555666666766554555442 245677777
Q ss_pred HHHHhhhhhcCCCcccCCCCCeEEccCCCCCC---CCCCCCCCceeEEc--CC-----CCCCHHHHHHHHHHHHHHHHHH
Q 012530 271 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MT-----LDSSEKQLALLYLATVQGIAYG 340 (461)
Q Consensus 271 ~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger---~P~~d~~a~g~~~G--l~-----~~~~~~~l~~~~rAvlEgia~~ 340 (461)
+++.+-.. .+-=+.+-.++|.. .+-...++.++-|| .. .+.+++|+ .|+++--|+++
T Consensus 267 ~LA~~Gd~----------~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDi---arSLL~mIs~N 333 (876)
T PLN02902 267 ELSQRGDN----------SAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDI---SLSLLRMISYN 333 (876)
T ss_pred HHHhcCCc----------cccCeeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHH---HHHHHHHHHHH
Confidence 66543110 11113456677632 12234566777777 21 12458885 46999999999
Q ss_pred HHHHHHHHHhCCCCccEEEEeccCCC-CHHHHHHHHhhhC------CceeecCC-CCchhHHHHHHH
Q 012530 341 TRHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHADIIG------CPIILPRE-NESVLLGAAILG 399 (461)
Q Consensus 341 ~~~~~~~l~~~g~~~~~i~~~GGga~-s~~w~Qi~Adv~g------~pV~~~~~-~e~~alGaA~lA 399 (461)
+-++--...+ -..+++|+++|...+ ++.-|+.++-.++ +....++. .=.+|+||.+..
T Consensus 334 IGqiA~L~A~-~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~ 399 (876)
T PLN02902 334 IGQISYLNAL-RFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSY 399 (876)
T ss_pred HHHHHHHHHH-HcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcC
Confidence 9876543333 245789999999775 5666777775542 33444433 225789997543
No 77
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=83.83 E-value=4.5 Score=40.07 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecCC
Q 012530 323 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE 387 (461)
Q Consensus 323 ~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~~ 387 (461)
+.+++ +++.+.++-.+.+.+....+. ..+++|.++||.+.|..+++.+.+.+ +.+|.+++.
T Consensus 232 ~~~iA---~~~q~~l~~~l~~~~~~~~~~-~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 232 KADIA---ASFQAAVVDVLVEKTKRALKK-TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 45654 577777777776666665442 34578999999999999999999998 888887653
No 78
>PRK00976 hypothetical protein; Provisional
Probab=83.37 E-value=4.9 Score=39.78 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCH--HHHHHHHhhhCCceeecCCCCchhHHHHHHHHHh
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP--LFLQQHADIIGCPIILPRENESVLLGAAILGAVA 402 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~--~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~ 402 (461)
++...+.++..+..++-.+ +|+.|++.||.++.+ .+.+.+.+.+..++... ..+++++|||++|.--
T Consensus 244 id~~~~~LA~~IAnLi~ll-----DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~L-G~dAGaiGAA~iA~~i 312 (326)
T PRK00976 244 IDTLALFVAMEIASLLLLN-----PEDNVVLAGSVGEMDEPDVSERIKELLDKKVLVL-GKESAAIGLALIARDI 312 (326)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCCEEEEcCccccCchhHHHHHHHHHhccccccc-CCchHHHHHHHHHHHH
Confidence 4566666666665555443 578899999999876 45555555554443333 4688999999998654
No 79
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=81.88 E-value=4.8 Score=38.71 Aligned_cols=59 Identities=25% Similarity=0.438 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhC--Cceeec-CCCC
Q 012530 331 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILP-RENE 389 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g--~pV~~~-~~~e 389 (461)
+-++|+.+|++..-+-.+.. ...+++.|+++||.+++..++..+.|-+. .||.+. .+.|
T Consensus 272 ~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~E 334 (358)
T COG3426 272 KLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDE 334 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchH
Confidence 46888899998877776654 35689999999999999999999998854 677764 3444
No 80
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=79.42 E-value=6.4 Score=39.14 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhh---hCCceeecCC
Q 012530 323 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADI---IGCPIILPRE 387 (461)
Q Consensus 323 ~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv---~g~pV~~~~~ 387 (461)
+.+++ +++.+.++-.+.+..+...+. ...++|.++||.+.|..+++.+.+. .|.+|.+++.
T Consensus 215 ~~diA---asfq~~l~~~l~~~a~~~~~~-~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 215 LEDVC---YSLQETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 55654 477777776666666655542 2367899999999999999999985 4778876543
No 81
>PTZ00297 pantothenate kinase; Provisional
Probab=79.23 E-value=80 Score=38.13 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecc-CCCCHHHHHHHHhhh------CCceeecCCC-CchhH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADII------GCPIILPREN-ESVLL 393 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG-ga~s~~w~Qi~Adv~------g~pV~~~~~~-e~~al 393 (461)
+++|+ .|+++-.|.+++-++--.. .....+++|+.+|+ ...++..|++++..+ ++.-..++.. =.+|+
T Consensus 1363 ~~~Di---~~sll~~is~nIgqia~l~-a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~ 1438 (1452)
T PTZ00297 1363 SAIDI---VRSLLNMISSNVTQLAYLH-SRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGAL 1438 (1452)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHH-HHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHh
Confidence 36785 5699999999998765333 22356889999999 557999999999886 3444444433 35889
Q ss_pred HHHHH
Q 012530 394 GAAIL 398 (461)
Q Consensus 394 GaA~l 398 (461)
||++.
T Consensus 1439 Ga~~~ 1443 (1452)
T PTZ00297 1439 GCATL 1443 (1452)
T ss_pred hhhhc
Confidence 99875
No 82
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=78.82 E-value=7.3 Score=41.60 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecC----CCCchhHHHHHHHH
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLGAAILGA 400 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~----~~e~~alGaA~lA~ 400 (461)
+.+++.+.++-.+...+....+. ..+++|.++||.+.|..+++.+.+.+ +.+|.+++ .+.+.++|+|....
T Consensus 221 iA~~~q~~l~~~l~~~~~~~~~~-~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~ 298 (535)
T PRK09605 221 VCYSLQETAFAMLTEVTERALAH-TGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLM 298 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHH
Confidence 34577777777777766665442 23578999999999999999999775 77888765 23456677665433
No 83
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=13 Score=36.94 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecCCCCchhHHHHHHHHHhc
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVAA 403 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~~~e~~alGaA~lA~~~~ 403 (461)
.+++.|.+.-.+....+..-+ -...+++.+.||.+.|..+++++..+. |..++.|+..= ..==+||+|..|.
T Consensus 238 a~sfQ~av~~~L~~kt~rAl~-~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~l-CtDNaaMIA~ag~ 312 (342)
T COG0533 238 AASFQEAVFDMLVEKTERALK-HTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLEL-CTDNAAMIAYAGL 312 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHh-ccchHHHHHHHHH
Confidence 346666655444444332222 245678999999999999999999976 44577664321 1112345554443
No 84
>PRK03011 butyrate kinase; Provisional
Probab=74.73 E-value=13 Score=37.55 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhC--CceeecC-CCC--chhHHHHH
Q 012530 331 LATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR-ENE--SVLLGAAI 397 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g--~pV~~~~-~~e--~~alGaA~ 397 (461)
+.++|-.++.+...+-.+... +.+++.|+++||.+.++.+.+.+-+-+. .||.+.. ..| +.++||+.
T Consensus 271 ~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 271 KLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 478888888888777766543 3468999999999988888876665543 3666543 332 45566543
No 85
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=74.05 E-value=8.4 Score=37.94 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecC
Q 012530 323 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR 386 (461)
Q Consensus 323 ~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~ 386 (461)
+.+++ +++.+.++-.+-+.++...+. ..+++|.++||.+.|..+++.+.+.+ |.+|.+++
T Consensus 231 ~~~iA---asfq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 231 KEDIA---YSFQETAFDHLIEKTKRALKD-TGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 45644 477777777666666655442 34678999999999999999999887 66787765
No 86
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.02 E-value=19 Score=35.53 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAH--GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~--g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
..|-+++-+.-++++.++-+... -..++.|.++||+++-.-+-+.+.+-++.|+.+.+.
T Consensus 260 vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 260 VLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 45689999999999999988654 357899999999999999999999999999998754
No 87
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=69.99 E-value=15 Score=35.69 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC--ccEEEEeccCCC-CHHHHHHHHhhhCCc-----eeecCCCCchhHHHHHHHHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHK--IDTLLACGGLAK-NPLFLQQHADIIGCP-----IILPRENESVLLGAAILGAV 401 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~--~~~i~~~GGga~-s~~w~Qi~Adv~g~p-----V~~~~~~e~~alGaA~lA~~ 401 (461)
+|=.=|-++-.++..+..+.....+ .=.|+.+||..+ .+.|++=+-+-+-.. ++....++.+|+|||++|+.
T Consensus 237 fr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~ 316 (336)
T KOG1794|consen 237 FRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAAS 316 (336)
T ss_pred HHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhh
Confidence 3444455555555555554332222 346899999775 677777444333222 56667788999999999997
Q ss_pred hccc
Q 012530 402 AAKR 405 (461)
Q Consensus 402 ~~G~ 405 (461)
-.++
T Consensus 317 ~~~~ 320 (336)
T KOG1794|consen 317 LDNI 320 (336)
T ss_pred hccc
Confidence 7663
No 88
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=68.92 E-value=4.5 Score=42.29 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCC-ceeecCCCCchhHHHHHHHHHhccccCC
Q 012530 339 YGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAAILGAVAAKRYSS 408 (461)
Q Consensus 339 ~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~~~~e~~alGaA~lA~~~~G~~~~ 408 (461)
-.+--|-..|++.+. ++++|.+.||..|-|-....+.+++|+ |=.-....|+.|+|||+-+++-.|..++
T Consensus 335 Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkd 408 (640)
T KOG0102|consen 335 RTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKD 408 (640)
T ss_pred hhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccc
Confidence 344445666776543 588999999999999999999999965 5555567899999999998887776543
No 89
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=68.42 E-value=13 Score=40.61 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccCCCCHHHHHHHHhhhCCcee--ecCCCCchhHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPII--LPRENESVLLGA 395 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~--~~~~~e~~alGa 395 (461)
-||.++-.|+.=+.+-+.=- +-++|...+. .++.|++.||++|-|....++.+..+..=. -....|++++||
T Consensus 331 vTRe~fEelc~Dl~~r~~~P---i~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGa 407 (902)
T KOG0104|consen 331 VTREEFEELCADLEERIVEP---INDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGA 407 (902)
T ss_pred eeHHHHHHHHHHHHHhhhhh---HHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHH
Confidence 34555443333333333322 3344444433 478999999999999999998888764322 345688999999
Q ss_pred HHHHHHhcc
Q 012530 396 AILGAVAAK 404 (461)
Q Consensus 396 A~lA~~~~G 404 (461)
++-|+.=..
T Consensus 408 v~~aA~LSk 416 (902)
T KOG0104|consen 408 VYQAAHLSK 416 (902)
T ss_pred HHHHHhhcc
Confidence 998875443
No 90
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=66.85 E-value=22 Score=37.08 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHhCC-CCc-c-EEEEeccCC-CCHHHHHHHHhhhC------CceeecCCCCchhH
Q 012530 329 LYLATVQGIAYGTRHI-----VEHCNAHG-HKI-D-TLLACGGLA-KNPLFLQQHADIIG------CPIILPRENESVLL 393 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~-----~~~l~~~g-~~~-~-~i~~~GGga-~s~~w~Qi~Adv~g------~pV~~~~~~e~~al 393 (461)
++|.+.+.|+=.-.+. .-.+.+.| ... + .|-+.|+.- ..|.+.|++...+. ..|.+...++.+.+
T Consensus 379 ~V~~vc~~v~~RaA~L~aagIaail~k~~~~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~~~~v~i~~s~dgSg~ 458 (474)
T KOG1369|consen 379 LVREVCDVVSRRAARLAAAGIAAILNKTGELSRKRVTVGVDGSLYKNHPFFREYLKEALRELLGPSIHVKLVLSEDGSGR 458 (474)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCceEEEeccchhHcCchHHHHHHHHHHHHhCCCceEEEEECCCCccc
Confidence 5677888776433322 12233333 222 2 233344443 57777777665554 57777788899999
Q ss_pred HHHHHHHHhcc
Q 012530 394 GAAILGAVAAK 404 (461)
Q Consensus 394 GaA~lA~~~~G 404 (461)
|||++|+++..
T Consensus 459 GAAL~Aav~~~ 469 (474)
T KOG1369|consen 459 GAALIAAVASR 469 (474)
T ss_pred cHHHHHHHHhh
Confidence 99999999864
No 91
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=64.35 E-value=1.5e+02 Score=29.09 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCC-HHHHHHHHhhhCCceeecCCCCchhHHHHHHHHHhcc
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s-~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G 404 (461)
..+++-.+..+...++.+.. .....+|.+.||.+++ +.|.-++=..+..|. ......||.++|....+
T Consensus 226 ~~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~-----~~D~~~GA~~~A~~~~~ 294 (301)
T COG2971 226 IRILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP-----IGDALSGAVLLALGRFG 294 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc-----cccHHHHHHHHHHHhhh
Confidence 36777788888888888852 2346789999999977 888877766665555 22356788888866554
No 92
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=63.89 E-value=33 Score=37.59 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=35.1
Q ss_pred ccEEEEeccCCCC--HHHH-----H-------HHHhhhCCceeecCCCCchhHHHHHHHHHhcc
Q 012530 355 IDTLLACGGLAKN--PLFL-----Q-------QHADIIGCPIILPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 355 ~~~i~~~GGga~s--~~w~-----Q-------i~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G 404 (461)
++.|++.||.+.. +.+. + +..-+-+.||.+....+.+.+|||.++...+.
T Consensus 270 p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~ 333 (638)
T PRK14101 270 LGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLGVSAILAEQLS 333 (638)
T ss_pred CCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHHHHHHHHHHhc
Confidence 6678888888743 3332 2 22233589999998888999999887776653
No 93
>PRK09557 fructokinase; Reviewed
Probab=63.36 E-value=33 Score=33.45 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHH-HHHhh----h----CCceeecC-CCCchhHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQ-QHADI----I----GCPIILPR-ENESVLLGAAILG 399 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Q-i~Adv----~----g~pV~~~~-~~e~~alGaA~lA 399 (461)
.+++-.+..+...+-.+... ..++.|++.||.++.+.+.. +...+ + ..+|.... ..+++++|||.++
T Consensus 223 ~~l~~~~~~La~~l~~l~~~-ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 223 LAFRRYEDRLAKSLAHVINI-LDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 44444444444433333321 45788888888877654443 22222 1 22344433 2456788998865
No 94
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=62.42 E-value=36 Score=33.60 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=21.5
Q ss_pred CCccEEEEe-ccCCCCHHHH---HHHH-hhh--CCceee
Q 012530 353 HKIDTLLAC-GGLAKNPLFL---QQHA-DII--GCPIIL 384 (461)
Q Consensus 353 ~~~~~i~~~-GGga~s~~w~---Qi~A-dv~--g~pV~~ 384 (461)
..++-|+++ ||||..++|+ ..+| .|. ..||..
T Consensus 74 ~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 74 DDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred ccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEE
Confidence 346677777 9999999997 3444 444 566653
No 95
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.12 E-value=34 Score=37.28 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCC---cee----ecCCCCchhH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC---PII----LPRENESVLL 393 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~---pV~----~~~~~e~~al 393 (461)
.++..++. ++..++|-.+..+...+.+. ..++.|.++||...|+++++-+++.+.. .+. +|..+-+-++
T Consensus 664 ~~~~~iA~---~fh~~la~~~~e~~~~~a~~-~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIsl 739 (750)
T COG0068 664 DEPEKIAT---KFHNALAEGFAELAVELAKK-YGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISL 739 (750)
T ss_pred CCHHHHHH---HHHHHHHHHHHHHHHHHHHh-cCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeH
Confidence 34555443 66666766666666666542 3468999999999999999999999863 343 3434445588
Q ss_pred HHHHHH
Q 012530 394 GAAILG 399 (461)
Q Consensus 394 GaA~lA 399 (461)
|=|+.+
T Consensus 740 GQ~v~~ 745 (750)
T COG0068 740 GQAVAA 745 (750)
T ss_pred HHHHHH
Confidence 988877
No 96
>PTZ00107 hexokinase; Provisional
Probab=60.24 E-value=58 Score=34.17 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCC--CccEEEEeccCC-CCHHHHHHHHh----hhC---CceeecC
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVE-----HCNAHGH--KIDTLLACGGLA-KNPLFLQQHAD----IIG---CPIILPR 386 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~-----~l~~~g~--~~~~i~~~GGga-~s~~w~Qi~Ad----v~g---~pV~~~~ 386 (461)
+..++. ++|-|.+.|.-.-.++.. .+.+.+. ..-.|-+.|+.- +.|.+.+.+.. +++ .+|....
T Consensus 366 ~~~d~~-~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~ 444 (464)
T PTZ00107 366 TDEDLY-TIRKICELVRGRAAQLAAAFIAAPAKKTRTVQGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYL 444 (464)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 345543 566666666544333322 2333333 334677778876 56665555444 442 5677777
Q ss_pred CCCchhHHHHHHHHHhc
Q 012530 387 ENESVLLGAAILGAVAA 403 (461)
Q Consensus 387 ~~e~~alGaA~lA~~~~ 403 (461)
.++++.+|||++|+++.
T Consensus 445 a~DGSg~GAAl~AA~~~ 461 (464)
T PTZ00107 445 ADDGSGKGAAIIAAMVA 461 (464)
T ss_pred ccCchHHHHHHHHHHhc
Confidence 88899999999999874
No 97
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=59.73 E-value=29 Score=35.81 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
-++..+..+.+|=+|=+..-++.-++........+..|.++||+++-+-...+-.++|++||++...
T Consensus 287 ~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 287 VTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 3566666666666666655554444433221234689999999999999999999999999998655
No 98
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=59.72 E-value=11 Score=35.93 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--------HHHHHHHh-CCCC--ccEEEEeccCC-CCHHHHHHHHhh----hC---Cce
Q 012530 322 SEKQLALLYLATVQGIAYGTR--------HIVEHCNA-HGHK--IDTLLACGGLA-KNPLFLQQHADI----IG---CPI 382 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~--------~~~~~l~~-~g~~--~~~i~~~GGga-~s~~w~Qi~Adv----~g---~pV 382 (461)
+..|.. ++|-|.+.|.-.-. -++..+++ .+.+ .-.|-+.|+.- +.|.+.+.+-+. ++ .+|
T Consensus 143 t~~d~~-~lr~I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v 221 (243)
T PF03727_consen 143 TEEDRQ-ILRRICEAVSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEEGCKV 221 (243)
T ss_dssp -HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEE
T ss_pred CHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccccceE
Confidence 445543 56677776653332 23333332 2333 22355556653 677776665554 33 477
Q ss_pred eecCCCCchhHHHHHHHHHhc
Q 012530 383 ILPRENESVLLGAAILGAVAA 403 (461)
Q Consensus 383 ~~~~~~e~~alGaA~lA~~~~ 403 (461)
.....++++.+|||++|+++.
T Consensus 222 ~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 222 EFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp EEEE-SSTHHHHHHHHHHHHH
T ss_pred EEEEecCchHHHHHHHHHHhc
Confidence 777788999999999999864
No 99
>PLN02914 hexokinase
Probab=56.74 E-value=68 Score=33.85 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCC--------CccEEEEeccCC-CCHHHHHHHHh----hhC---
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVE-----HCNAHGH--------KIDTLLACGGLA-KNPLFLQQHAD----IIG--- 379 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~-----~l~~~g~--------~~~~i~~~GGga-~s~~w~Qi~Ad----v~g--- 379 (461)
.+..++. ++|-|.+.|.-.-.++.- .+++.+. +.-.|-+.|+.- +.|.+.+.+.+ ++|
T Consensus 385 ~~~~d~~-~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~ 463 (490)
T PLN02914 385 ASLSARR-RVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQDAVTELLGLEL 463 (490)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHHHHHHHHhCccc
Confidence 4455543 566677766644333322 2333332 123566778865 56666655544 443
Q ss_pred -CceeecCCCCchhHHHHHHHHHhc
Q 012530 380 -CPIILPRENESVLLGAAILGAVAA 403 (461)
Q Consensus 380 -~pV~~~~~~e~~alGaA~lA~~~~ 403 (461)
.+|.+...++++.+|||++|+.+.
T Consensus 464 ~~~i~i~~a~DGSGvGAAl~AA~~s 488 (490)
T PLN02914 464 SKNIAIEHTKDGSGIGAALLAATNS 488 (490)
T ss_pred CCcEEEEEccCchHHHHHHHHHHhh
Confidence 357776778899999999999864
No 100
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=54.75 E-value=61 Score=31.56 Aligned_cols=53 Identities=21% Similarity=0.091 Sum_probs=32.0
Q ss_pred cCHHHHHHcCCCCCCcEeechhhhhhhccCc--ccccCccchhhhhhhhhhccCeEEEEecccceeeeeccC
Q 012530 139 LTPAAAKELGLVPGTPVGTSLIDAHAGGVGV--MESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 208 (461)
Q Consensus 139 v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~--~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~ 208 (461)
+.+.+++.+| +||+. ..|..|+++|- .+..++ . ...+++++||.--...+.+.
T Consensus 88 l~~~l~~~~~----~pV~i-eNDa~aaalaE~~~g~~~~-----~-------~~~~~l~~gtGiG~giv~~G 142 (303)
T PRK13310 88 LRADLSARLG----RDVRL-DNDANCFALSEAWDDEFTQ-----Y-------PLVMGLILGTGVGGGLVFNG 142 (303)
T ss_pred HHHHHHHHHC----CCeEE-eccHhHHHHHHhhhccccC-----C-------CcEEEEEecCceEEEEEECC
Confidence 5666777765 46554 67888877662 121111 0 36788899998655555554
No 101
>PLN02405 hexokinase
Probab=52.04 E-value=76 Score=33.56 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHhCCC--------CccEEEEeccCC-CCHHHHHHHH----hhhC----CceeecC
Q 012530 329 LYLATVQGIAYGTRHIV-----EHCNAHGH--------KIDTLLACGGLA-KNPLFLQQHA----DIIG----CPIILPR 386 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~-----~~l~~~g~--------~~~~i~~~GGga-~s~~w~Qi~A----dv~g----~pV~~~~ 386 (461)
++|-|.+.|+-.-.++. -.+++.|. +...|-+.||.- +.|.+.+.+. ++++ .+|.+..
T Consensus 394 ~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~ 473 (497)
T PLN02405 394 VVVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEH 473 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEE
Confidence 56667776664433332 22333332 123577778865 5665555444 4454 3577767
Q ss_pred CCCchhHHHHHHHHHhc
Q 012530 387 ENESVLLGAAILGAVAA 403 (461)
Q Consensus 387 ~~e~~alGaA~lA~~~~ 403 (461)
.++++.+|||++|+.+.
T Consensus 474 a~DGSGvGAAl~AA~~~ 490 (497)
T PLN02405 474 SNDGSGIGAALLAASHS 490 (497)
T ss_pred ecCchHHHHHHHHHHHh
Confidence 78899999999999875
No 102
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=49.76 E-value=64 Score=33.06 Aligned_cols=48 Identities=8% Similarity=0.121 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCC-CCHHHHHHHHhhh
Q 012530 331 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADII 378 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga-~s~~w~Qi~Adv~ 378 (461)
+-++|..+|+++..+-.+-. .+..++.|+++||.. .|+..++.+.+-+
T Consensus 303 ~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 303 QLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 35899999999998887765 355689999999998 8888888777654
No 103
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=49.64 E-value=29 Score=32.34 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccEEEEeccC-CCCHHHHHHHHhhhC
Q 012530 333 TVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL-AKNPLFLQQHADIIG 379 (461)
Q Consensus 333 vlEgia~~~~~~~~~l~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~g 379 (461)
.|--...+.++++|.|++.|++.+-+...||. ...++|-|+=||+..
T Consensus 164 lMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~ 211 (227)
T COG5012 164 LMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccC
Confidence 33334456889999999999887666666776 456666666666554
No 104
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=49.07 E-value=76 Score=30.69 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHH-HHHHHHhhhC------CceeecCC-CCchhHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPL-FLQQHADIIG------CPIILPRE-NESVLLGAAILG 399 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~-w~Qi~Adv~g------~pV~~~~~-~e~~alGaA~lA 399 (461)
.+++-.+..+...+..+... ..++.|++.|+.+..+. +.++...+-. .+|..... .+++++|||.++
T Consensus 212 ~~~~~~~~~la~~l~~l~~~-~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 212 ALINRSAQAIARLIADLKAT-LDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 34444444444444333221 45788989888765544 3334433322 23343332 456788999875
No 105
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=48.49 E-value=67 Score=32.96 Aligned_cols=48 Identities=10% Similarity=0.219 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCC-CCHHHHHHHHhhh
Q 012530 331 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADII 378 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga-~s~~w~Qi~Adv~ 378 (461)
+-++|..+|+++..+-.+-. ....++.|+++||.. .|+.+++.+.+-+
T Consensus 299 ~lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l 348 (402)
T PRK00180 299 KLALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGL 348 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 35899999999998887765 334689999999988 9999988777664
No 106
>PRK12408 glucokinase; Provisional
Probab=47.33 E-value=49 Score=33.04 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccE-EEEeccCCCC--HHHHH---HHH--------hhh-CCceeecCCCCchhHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKIDT-LLACGGLAKN--PLFLQ---QHA--------DII-GCPIILPRENESVLLG 394 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~~-i~~~GGga~s--~~w~Q---i~A--------dv~-g~pV~~~~~~e~~alG 394 (461)
++-..+.++..+..+...+ .++. |++.||.+.+ +++.. +.+ +.+ ..||+.....+++.+|
T Consensus 252 ~~~~~~~La~~i~nl~~~l-----dPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~G 326 (336)
T PRK12408 252 LQVFCGFLGSVVGDMALAY-----GARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLG 326 (336)
T ss_pred HHHHHHHHHHHHHHHHHHH-----CCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHH
Confidence 3444555555554444433 4666 8999998743 54433 111 122 6778877666788999
Q ss_pred HHHHH
Q 012530 395 AAILG 399 (461)
Q Consensus 395 aA~lA 399 (461)
||.++
T Consensus 327 Aa~~~ 331 (336)
T PRK12408 327 AASWY 331 (336)
T ss_pred HHHHH
Confidence 98654
No 107
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=47.08 E-value=69 Score=32.10 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCC-chhHHHHHHHH
Q 012530 353 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILGA 400 (461)
Q Consensus 353 ~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e-~~alGaA~lA~ 400 (461)
..+++|+++|||++ ++...+-+.++.- .+++.++ +-|+|-..++.
T Consensus 290 ~~~d~IiL~GGGA~--ll~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 290 NSFDRVIVTGGGAN--IFFDSLSHWYSDV-EKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCCCEEEEECCcHH--HHHHHHHHHcCCe-EEcCChHHHHHHHHHHHHH
Confidence 36789999999996 5667888888764 4444444 55788877765
No 108
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=47.08 E-value=53 Score=30.21 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCC-chhHHHHHHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILG 399 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e-~~alGaA~lA 399 (461)
++-|+|=+|--++..++ +..++.+++.||...-+-.-.++-.-|+++|..|..+. -+.+|-|+..
T Consensus 207 v~PV~eKMAeIv~~hie-----~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 207 VKPVYEKMAEIVARHIE-----GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred hhHHHHHHHHHHHHHhc-----cCCCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhcc
Confidence 45788888877776665 45678899999998888888889889999999987655 4678877643
No 109
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=45.58 E-value=27 Score=34.06 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-hCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC--CCchhHHHHH
Q 012530 331 LATVQGIAYGTRHIVEHCN-AHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE--NESVLLGAAI 397 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~-~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~--~e~~alGaA~ 397 (461)
+.+++-+..++.+.++.+. ..+..++...+.+.|.-.+++..-+|+.+|.+.++++. .-..|+|+++
T Consensus 214 ~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~g~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 214 EGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGAGPLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--EEEE-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4777777777777766652 23555655544443333478999999999998665543 3456778765
No 110
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=41.79 E-value=88 Score=30.57 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCC-HHHHHHHHhhhC----------CceeecCC-CCchhHHHHHH
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIG----------CPIILPRE-NESVLLGAAIL 398 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s-~~w~Qi~Adv~g----------~pV~~~~~-~e~~alGaA~l 398 (461)
+.+++-.+..+...+..+.. -..++.|++.|+.++. +.+...+-..+. .+|..... .+++++|||.+
T Consensus 229 ~~i~~~~~~~L~~~i~~~~~-~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~ 307 (318)
T TIGR00744 229 VDSYREVARWAGAGLADLAS-LFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADL 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHH
Confidence 35666566665555554433 2467888888887763 444443322221 23444443 45678899987
Q ss_pred HH
Q 012530 399 GA 400 (461)
Q Consensus 399 A~ 400 (461)
+.
T Consensus 308 ~~ 309 (318)
T TIGR00744 308 AR 309 (318)
T ss_pred HH
Confidence 54
No 111
>PLN02596 hexokinase-like
Probab=41.66 E-value=62 Score=34.16 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=52.4
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCC---CCccEEEEeccCC-CCHHHHHH----HHhhhC--
Q 012530 315 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-----HCNAHG---HKIDTLLACGGLA-KNPLFLQQ----HADIIG-- 379 (461)
Q Consensus 315 ~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~-----~l~~~g---~~~~~i~~~GGga-~s~~w~Qi----~Adv~g-- 379 (461)
+|+. .++..+.. ++|-|.+.|.-.-.++.. .+.+.| .+...|-+.|+.- +.|.+.+. +.+++|
T Consensus 382 l~~~-~~~~~d~~-~lr~i~~~V~~RAArL~Aa~iaail~k~g~~~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~ 459 (490)
T PLN02596 382 FGIT-DSTPMARE-VVAEVCDIVAERGARLAGAGIVGIIKKLGRIENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSE 459 (490)
T ss_pred cCCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcc
Confidence 3543 23444543 577788877654444332 233433 1223577778866 56555444 445554
Q ss_pred --CceeecCCCCchhHHHHHHHHHhcc
Q 012530 380 --CPIILPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 380 --~pV~~~~~~e~~alGaA~lA~~~~G 404 (461)
.+|.+...++++.+|||++|+....
T Consensus 460 ~~~~i~~~~s~DGSG~GAAl~AA~~~~ 486 (490)
T PLN02596 460 LSDNVVIEHSHGGSGAGALFLAACQTG 486 (490)
T ss_pred cCCcEEEEEccCchhHHHHHHHHhhcc
Confidence 2566656788999999999998754
No 112
>PRK07058 acetate kinase; Provisional
Probab=40.71 E-value=1e+02 Score=31.53 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCC-CCHHHHHHHHhhh
Q 012530 331 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADII 378 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga-~s~~w~Qi~Adv~ 378 (461)
+-++|..+|+++..+-.+-. .| .++.|+++||.. .|+..++.+.+-+
T Consensus 295 ~lA~d~f~yri~k~IGa~~a~Lg-~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 295 REALDLFALRIAGEIARLAATLG-GLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhh
Confidence 36899999999998887765 34 689999999998 8888888776654
No 113
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=40.70 E-value=82 Score=31.53 Aligned_cols=72 Identities=11% Similarity=0.174 Sum_probs=41.9
Q ss_pred HHHHHHHHHH----HHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecCCCCchhHHHHHHHHHhcc
Q 012530 332 ATVQGIAYGT----RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 332 AvlEgia~~~----~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~~~e~~alGaA~lA~~~~G 404 (461)
.+.+.++..+ .+.++.+......++.++++||.|.|+.....+-+.. |.....|...-.+ =-+.|+|..|+-
T Consensus 279 ~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCs-DNgiMIaw~Gie 357 (405)
T KOG2707|consen 279 SLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCS-DNGIMIAWTGIE 357 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcC-CcchhhhhHHHH
Confidence 5555544433 3334433333456789999999999999998888774 5555544322111 122366665543
No 114
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=40.53 E-value=41 Score=33.27 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CC-CccE-EEEeccCCCCHHHHHHHHhhhCCceeecCCC
Q 012530 330 YLATVQGIAYGTRHIVEHCNAH-GH-KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPREN 388 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~-g~-~~~~-i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~ 388 (461)
.+-.+.+|.-.+|..++..... -. -+++ ++++||||.-.-+-+.+++-++.||.+.++.
T Consensus 256 l~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~p 317 (342)
T COG1077 256 LEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDP 317 (342)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCCh
Confidence 3455556666666666653211 11 1345 9999999977777889999999999987643
No 115
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=40.08 E-value=1.3e+02 Score=26.96 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHHHHhccccCCHHHHHHHhhcC
Q 012530 340 GTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAA 419 (461)
Q Consensus 340 ~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~ 419 (461)
+++..++-++..|+.+. -+...+++++|+|...+....... .+-|+-.=++|..
T Consensus 58 E~~~l~~yL~~~gldv~------------~~i~~i~~~l~~~~~~p~~~~~~~--------~~~g~~g~~~di~------ 111 (179)
T PF06757_consen 58 EVKALLDYLESAGLDVY------------YYINQINDLLGLPPLNPTPSLSCS--------RGGGLNGFVDDIL------ 111 (179)
T ss_pred HHHHHHHHHHHCCCCHH------------HHHHHHHHHHcCCcCCCCcccccc--------cCCCHHHHHHHHH------
Confidence 34556667777776553 478999999999987654332211 1122211122321
Q ss_pred CeEEcCCCChhhHHHHHHHH---HHHHHHHHHHH
Q 012530 420 GQVIHPSKDPKVKKYHDAKY---LIFRELFEQQV 450 (461)
Q Consensus 420 ~~~~~P~~~~~~~~~y~~~y---~~y~~l~~~~~ 450 (461)
..-| ..+.++.|+++. +.|++++++++
T Consensus 112 --~~lP--~~~l~aL~~~K~~~s~~F~~f~~~l~ 141 (179)
T PF06757_consen 112 --ALLP--RDKLRALYEEKLATSPEFAEFVEALR 141 (179)
T ss_pred --HHCC--HHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 2346 667777888777 46777777766
No 116
>PRK00292 glk glucokinase; Provisional
Probab=39.88 E-value=69 Score=31.47 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcc-EEEEeccCCC-C-HHHHH-----H------HHhh-hCCceeecCCCCchhHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKID-TLLACGGLAK-N-PLFLQ-----Q------HADI-IGCPIILPRENESVLLGAA 396 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~-~i~~~GGga~-s-~~w~Q-----i------~Adv-~g~pV~~~~~~e~~alGaA 396 (461)
-..+.++..+..+... ..++ .|++.||.+. + +.+.. - +.+. -..||++....+++.+|||
T Consensus 236 ~~~~~lg~~i~~l~~~-----~~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa 310 (316)
T PRK00292 236 LFCVILGRVAGNLALT-----LGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAG 310 (316)
T ss_pred HHHHHHHHHHHHHHHH-----hcCCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHH
Confidence 4444444444444443 3466 7888888873 2 22222 1 2223 2677776666788999998
Q ss_pred HHHH
Q 012530 397 ILGA 400 (461)
Q Consensus 397 ~lA~ 400 (461)
.++.
T Consensus 311 ~~~~ 314 (316)
T PRK00292 311 AYLR 314 (316)
T ss_pred HHHh
Confidence 8764
No 117
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=39.75 E-value=26 Score=26.79 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=24.4
Q ss_pred HHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCC
Q 012530 105 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 153 (461)
Q Consensus 105 ~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~ 153 (461)
.++|+.++|.+. +||+|. .++.+|+.+|...|=
T Consensus 27 ~~vLk~l~i~~~---qLPkI~-------------~~DPva~~lgak~Gd 59 (80)
T COG2012 27 KEVLKELGIEPE---QLPKIK-------------ASDPVAKALGAKPGD 59 (80)
T ss_pred HHHHHHhCCCHH---HCCccc-------------ccChhHHHccCCCCc
Confidence 579999999985 678763 456677778877664
No 118
>PRK09698 D-allose kinase; Provisional
Probab=38.62 E-value=1.4e+02 Score=29.04 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHH-H----HHHHHhhh-------CCceeecC-CCCchhHHHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPL-F----LQQHADII-------GCPIILPR-ENESVLLGAA 396 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~-w----~Qi~Adv~-------g~pV~~~~-~~e~~alGaA 396 (461)
++...+.++..+..++..+ .|+.|++.|+.++... + .+.+.+.+ ..+|.... ..+++++|||
T Consensus 217 ~~~~~~~la~~l~~li~~l-----dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa 291 (302)
T PRK09698 217 IQSLLENLARAIATSINLF-----DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAA 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHh-----CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHH
Confidence 3466677777777666544 5778888888776532 2 22222221 12344443 3456789999
Q ss_pred HHHH
Q 012530 397 ILGA 400 (461)
Q Consensus 397 ~lA~ 400 (461)
.++.
T Consensus 292 ~~~~ 295 (302)
T PRK09698 292 ILAH 295 (302)
T ss_pred HHHH
Confidence 8864
No 119
>PRK07157 acetate kinase; Provisional
Probab=33.31 E-value=1.6e+02 Score=30.13 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHH-HHHHHHhhh
Q 012530 332 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPL-FLQQHADII 378 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~-w~Qi~Adv~ 378 (461)
-++|..+|+++..+-.+-. .+..++.|+++||...|.. .++.+.+-+
T Consensus 297 lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l 345 (400)
T PRK07157 297 FALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKI 345 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhc
Confidence 5889999999998887765 3546899999999886655 666555543
No 120
>PTZ00288 glucokinase 1; Provisional
Probab=33.17 E-value=1.7e+02 Score=30.12 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCccEEEEeccCC-CCHHHHH---------H-----H---Hhhh-CCceee-cCCCCchhHHHHHHHHHh
Q 012530 353 HKIDTLLACGGLA-KNPLFLQ---------Q-----H---ADII-GCPIIL-PRENESVLLGAAILGAVA 402 (461)
Q Consensus 353 ~~~~~i~~~GGga-~s~~w~Q---------i-----~---Adv~-g~pV~~-~~~~e~~alGaA~lA~~~ 402 (461)
..++.|++.||++ ++..+.+ - + .+.+ .+||++ ....+.+.+|||..|...
T Consensus 322 l~P~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~ 391 (405)
T PTZ00288 322 FLPLTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQL 391 (405)
T ss_pred HCCCEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHh
Confidence 3466688888664 4433322 1 1 3443 789987 777888999999887654
No 121
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=32.17 E-value=46 Score=25.34 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=23.0
Q ss_pred CHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCc
Q 012530 104 DDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTP 154 (461)
Q Consensus 104 ~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~p 154 (461)
-.++|+.+++.+. +||+| ..++.+++.+|+..|--
T Consensus 20 ~~~lL~~y~i~~~---qLP~I-------------~~~DPv~r~~g~k~GdV 54 (74)
T PF01191_consen 20 KKELLKKYNIKPE---QLPKI-------------LSSDPVARYLGAKPGDV 54 (74)
T ss_dssp HHHHHHHTT--TT---CSSEE-------------ETTSHHHHHTT--TTSE
T ss_pred HHHHHHHhCCChh---hCCcc-------------cccChhhhhcCCCCCCE
Confidence 4678999999864 67876 25777888999887743
No 122
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=31.72 E-value=33 Score=30.87 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=35.7
Q ss_pred EEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHHHHhccc
Q 012530 357 TLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 405 (461)
Q Consensus 357 ~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~ 405 (461)
++.+.|||+|--.+..++.-+...-+.. +.--+++.||.+.|.+++|.
T Consensus 1 ~Lvl~GGG~rG~~~~Gvl~~L~e~~~~~-d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 1 NLVFEGGGAKGIAYIGALKALEEAGILK-KRVAGTSAGAITAALLALGY 48 (194)
T ss_pred CeEEcCchHHHHHHHHHHHHHHHcCCCc-ceEEEECHHHHHHHHHHcCC
Confidence 4789999999888888887775443332 34446788999999998885
No 123
>PRK12440 acetate kinase; Reviewed
Probab=31.63 E-value=1.8e+02 Score=29.75 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHH-HHHHHHhhh
Q 012530 331 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPL-FLQQHADII 378 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~-w~Qi~Adv~ 378 (461)
+-++|..+|+++..+-.+-. .+ .++.|+++||...|.. .++.+.+-+
T Consensus 297 ~lA~d~f~yri~k~Ig~~~a~l~-gvDaiVFTgGIGen~~~vr~~i~~~l 345 (397)
T PRK12440 297 TLAFEVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSLPIRREILKNL 345 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhh
Confidence 35889999999988887754 35 6899999999886655 666555544
No 124
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=31.58 E-value=43 Score=25.86 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=26.1
Q ss_pred HHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcE
Q 012530 105 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 155 (461)
Q Consensus 105 ~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV 155 (461)
.++|+.+++.+. +||+|. .++.+|+.+|+..|--|
T Consensus 24 ~~lL~~y~i~~~---qLP~I~-------------~~DPv~r~~g~k~GdVv 58 (79)
T PRK09570 24 KKLLKEYGIKPE---QLPKIK-------------ASDPVVKAIGAKPGDVI 58 (79)
T ss_pred HHHHHHcCCCHH---HCCcee-------------ccChhhhhcCCCCCCEE
Confidence 578999999875 678762 57778888898877433
No 125
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.56 E-value=1.7e+02 Score=31.52 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCCCccEEEEecc-CCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHHHHhccccCC
Q 012530 342 RHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSS 408 (461)
Q Consensus 342 ~~~~~~l~~~g~~~~~i~~~GG-ga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~ 408 (461)
++++..++...-..+-|-|+|+ +-..++| =+|.-.|.++.-.-++...|.=+|+||..|+|.--+
T Consensus 67 ~~li~il~~lP~~tkLVQVTg~~g~~~sL~--~lArr~G~~~~~~~~P~eeA~~~A~LA~~GvG~ev~ 132 (652)
T COG2433 67 RDLIRILKRLPEGTKLVQVTGRPGEQESLW--ELARRHGIRVNGKLNPYEEAYACARLASKGVGTEVS 132 (652)
T ss_pred hHHHHHHHhCCCCceEEEEeCCCCCcchHH--HHHHHhCCCCCCCCChHHHHHHHHHHHhcCCCceeE
Confidence 3445555554334567899998 5566665 489999999985556677889999999999996433
No 126
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=31.29 E-value=1.8e+02 Score=28.31 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=35.3
Q ss_pred cCHHHHHHcCCCCCCcEeechhhhhhhccCc--ccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCcc
Q 012530 139 LTPAAAKELGLVPGTPVGTSLIDAHAGGVGV--MESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKL 210 (461)
Q Consensus 139 v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~--~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~ 210 (461)
+.+.+.+.+| +||.. .-|..|+++|- .|..++ ....+++++||.---..+.+..+
T Consensus 98 l~~~L~~~~~----~Pv~v-eNDan~aalaE~~~g~~~~------------~~~~~~i~~gtGIG~giv~~g~l 154 (314)
T COG1940 98 LAEELEARLG----LPVFV-ENDANAAALAEAWFGAGRG------------IDDVVYITLGTGIGGGIIVNGKL 154 (314)
T ss_pred HHHHHHHHHC----CCEEE-ecHHHHHHHHHHHhCCCCC------------CCCEEEEEEccceeEEEEECCEE
Confidence 5667777766 55555 68999887763 122111 03689999999876666666543
No 127
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=30.99 E-value=2.5e+02 Score=28.24 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhh--CCceeecCC
Q 012530 331 LATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADII--GCPIILPRE 387 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~--g~pV~~~~~ 387 (461)
+.++|-.++.+...+-.+-.. +..++.|+++||.+.++.++..+.+-+ =.||.+...
T Consensus 269 ~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 269 KLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 467777777777666655432 336889999999998887766555553 488887643
No 128
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=29.93 E-value=53 Score=33.56 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCC-CHHHHHHHHhhh-CCceeec
Q 012530 331 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAK-NPLFLQQHADII-GCPIILP 385 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~-s~~w~Qi~Adv~-g~pV~~~ 385 (461)
+-++|..+|+++..+-.+-. ....++.|+++||.+. +++.++++.+.+ -.+|.+-
T Consensus 296 ~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~~~gv~ld 353 (388)
T PF00871_consen 296 KLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLWFLGVKLD 353 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-B-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcCcCCeEec
Confidence 46899999999998887754 3346899999999884 677778888775 3566653
No 129
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=29.62 E-value=1.6e+02 Score=30.16 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCc
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 390 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~ 390 (461)
+++.+..|+...+...+..+++.+.+++-|+.+||-. .-+.|-..|+|+.+..+.|.
T Consensus 68 ~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~~~~~es 124 (396)
T TIGR03492 68 LLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-----PLLFAWLSGKPYAFVGTAKS 124 (396)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-----HHHHHHHcCCCceEEEeecc
Confidence 5678999999999888888888656889999999988 45577778999998444443
No 130
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=29.59 E-value=1.5e+02 Score=26.02 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=31.1
Q ss_pred HHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 012530 400 AVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVS 451 (461)
Q Consensus 400 ~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~ 451 (461)
+.++-.+-+..|..+++......-+| |+..-...+....+--+|.++.+.
T Consensus 115 a~ala~~~de~ela~~Lra~sp~atP--N~RliaI~d~~l~r~Grlv~ai~~ 164 (172)
T COG5350 115 ALALAPDMDETELAERLRALSPYATP--NPRLIAIADAALGRKGRLVKAIKA 164 (172)
T ss_pred HHhhccccChHHHHHHHHhcCcccCC--ChhHHHHHHHHHhhcchHHHHHHH
Confidence 33444445556666666656666779 888777777665555555555543
No 131
>PRK12379 propionate/acetate kinase; Provisional
Probab=29.52 E-value=2.4e+02 Score=28.96 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCC-CHHHHHHHHhh
Q 012530 332 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAK-NPLFLQQHADI 377 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~-s~~w~Qi~Adv 377 (461)
-++|..+|+++..+-.+-. .+ .++.|+++||... +...++.+.+-
T Consensus 295 lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~ 341 (396)
T PRK12379 295 LAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEH 341 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhh
Confidence 5889999999988887765 35 7899999999874 55555555544
No 132
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=29.39 E-value=1.2e+02 Score=29.12 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=25.2
Q ss_pred CCccEEEEeccCCCCHHHHHHHHhhh--CCceeecC
Q 012530 353 HKIDTLLACGGLAKNPLFLQQHADII--GCPIILPR 386 (461)
Q Consensus 353 ~~~~~i~~~GGga~s~~w~Qi~Adv~--g~pV~~~~ 386 (461)
..++.|.++||.+.|..+++-+.+.. +.++..|.
T Consensus 220 ~~~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 220 PRAKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HTCSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence 35689999999999999999876554 66676665
No 133
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.88 E-value=2.3e+02 Score=29.42 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=19.9
Q ss_pred ccEEEEe-ccCCCCHHHH---HHHH-hhh--CCceee
Q 012530 355 IDTLLAC-GGLAKNPLFL---QQHA-DII--GCPIIL 384 (461)
Q Consensus 355 ~~~i~~~-GGga~s~~w~---Qi~A-dv~--g~pV~~ 384 (461)
++-|+++ ||||..++|+ ..+| .|. ..||..
T Consensus 188 ~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 188 CDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIIS 224 (432)
T ss_pred CCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEE
Confidence 5666666 9999999996 2333 444 455553
No 134
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=28.45 E-value=86 Score=33.43 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=47.9
Q ss_pred cCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHH
Q 012530 363 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIF 442 (461)
Q Consensus 363 Gga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y 442 (461)
+.+|-.++.|++=|++.-.+.++ ...++.|||.++.+. +|.|.. ++=....+. +-.|.| +... +.=.+.+++|
T Consensus 101 e~tRYqfflQlKqDll~GRL~Cp-~~~AaeLaAl~lQsE-LGDYn~-~~Ht~~yVS-efRf~p--~Qte-~LE~~I~e~h 173 (616)
T KOG3530|consen 101 ENTRYQFFLQLKQDLLSGRLYCP-FETAAELAALILQSE-LGDYNE-EEHTGGYVS-EFRFLP--NQTE-ELEERIFELH 173 (616)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHH-hcCCCh-hhcccccee-eeEecc--cccH-HHHHHHHHHH
Confidence 44566799999999997777765 456778888888764 787753 221112222 234778 5432 2224567778
Q ss_pred HHHH
Q 012530 443 RELF 446 (461)
Q Consensus 443 ~~l~ 446 (461)
+++.
T Consensus 174 K~~r 177 (616)
T KOG3530|consen 174 KELR 177 (616)
T ss_pred HHhc
Confidence 7764
No 135
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=28.38 E-value=66 Score=31.66 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcc-EEEEeccCC-C-CHHHHH-----H-------HHhhhCCceeecCCCCchhHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKID-TLLACGGLA-K-NPLFLQ-----Q-------HADIIGCPIILPRENESVLLG 394 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~-~i~~~GGga-~-s~~w~Q-----i-------~Adv~g~pV~~~~~~e~~alG 394 (461)
++-.++.++..+..+...+ .++ -+++.||++ + .+.+.+ - ...+-+.||++....+.+.+|
T Consensus 240 ~~~~~~~lg~~i~nl~~~l-----dpeggv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~~i~~~~~~l~G 314 (316)
T TIGR00749 240 LSLFCVIYGRFAGNLALNL-----GTRGGVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVYVVLHDNPGLLG 314 (316)
T ss_pred HHHHHHHHHHHHHHHHHHh-----CCCCcEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEEEEcCCCccccC
Confidence 3344445555554444443 343 588888886 2 133333 2 223358999998888888888
Q ss_pred HH
Q 012530 395 AA 396 (461)
Q Consensus 395 aA 396 (461)
||
T Consensus 315 ~~ 316 (316)
T TIGR00749 315 AG 316 (316)
T ss_pred CC
Confidence 74
No 136
>PLN02362 hexokinase
Probab=28.36 E-value=4e+02 Score=28.33 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=32.9
Q ss_pred EEEEeccCC-CCHHHHHHHH----hhhCC----ceeecCCCCchhHHHHHHHHHhcc
Q 012530 357 TLLACGGLA-KNPLFLQQHA----DIIGC----PIILPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 357 ~i~~~GGga-~s~~w~Qi~A----dv~g~----pV~~~~~~e~~alGaA~lA~~~~G 404 (461)
.|-+.||.- +.|.+.+.+. ++++. .|.+...++++.+|||++|+.+..
T Consensus 444 ~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~~~ 500 (509)
T PLN02362 444 VVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASYSS 500 (509)
T ss_pred EEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHHHh
Confidence 566678765 5665555444 44432 556656788999999999998854
No 137
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.79 E-value=2.1e+02 Score=29.69 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=19.4
Q ss_pred ccEEEEe-ccCCCCHHHH---HHHH-hhh--CCceee
Q 012530 355 IDTLLAC-GGLAKNPLFL---QQHA-DII--GCPIIL 384 (461)
Q Consensus 355 ~~~i~~~-GGga~s~~w~---Qi~A-dv~--g~pV~~ 384 (461)
++-|+++ ||||..++|+ ..+| .|+ ..||..
T Consensus 193 ~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis 229 (438)
T PRK00286 193 EDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVIS 229 (438)
T ss_pred CCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEE
Confidence 5666666 9999999985 2333 344 566653
No 138
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.76 E-value=2.5e+02 Score=27.68 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=47.9
Q ss_pred CCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEe--ccCC---CCHHHH---HHHHh
Q 012530 306 ADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLAC--GGLA---KNPLFL---QQHAD 376 (461)
Q Consensus 306 ~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~--GGga---~s~~w~---Qi~Ad 376 (461)
.|....-.|+.+..+|+-+++ ++| .+++-.+.+.+. =...++|.+. |||+ ++.+|. |-+||
T Consensus 142 yd~~~n~g~v~vg~s~dTa~F------av~----~i~~WW~~~g~~~yp~a~~lli~~D~GgsN~~r~r~wk~~L~~la~ 211 (311)
T PF07592_consen 142 YDPAANEGWVSVGTSHDTADF------AVD----SIRRWWEEMGKARYPHAKRLLITADNGGSNGSRRRLWKKRLQELAD 211 (311)
T ss_pred EeccCCeEEEEEecCcccHHH------HHH----HHHHHHHHhChhhcCchheEEEeccCCCCccchhHHHHHHHHHHHH
Confidence 455666677777777766664 233 345667766432 1235565554 6654 677775 57889
Q ss_pred hhCCceeecCCCCch
Q 012530 377 IIGCPIILPRENESV 391 (461)
Q Consensus 377 v~g~pV~~~~~~e~~ 391 (461)
-+|+.|.+..-+-.+
T Consensus 212 ~~gl~I~v~hyPP~t 226 (311)
T PF07592_consen 212 ETGLSIRVCHYPPGT 226 (311)
T ss_pred HhCCEEEEEEcCCCc
Confidence 999999987655443
No 139
>PRK12397 propionate kinase; Reviewed
Probab=26.21 E-value=2.8e+02 Score=28.49 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCC-CCHHHHHHHHhh
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA-KNPLFLQQHADI 377 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga-~s~~w~Qi~Adv 377 (461)
+-++|..+|+++..+-.+-..-..++.|+++||.. +|+..++.+.+-
T Consensus 298 ~lA~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEns~~vR~~ic~~ 345 (404)
T PRK12397 298 KLALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHN 345 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhCCHHHHHHHHhh
Confidence 35889999999988887765423589999999977 566666655543
No 140
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=25.33 E-value=28 Score=35.08 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=32.3
Q ss_pred ccEEEEeccCCCCHHHHHHHHhhhCC--c------eeec--CC-CCchhHHHHHHHHH
Q 012530 355 IDTLLACGGLAKNPLFLQQHADIIGC--P------IILP--RE-NESVLLGAAILGAV 401 (461)
Q Consensus 355 ~~~i~~~GGga~s~~w~Qi~Adv~g~--p------V~~~--~~-~e~~alGaA~lA~~ 401 (461)
.++|+++||+|+-+-+.+.+.+-++. | +.+. .. .-++-+|++++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 46799999999998888888777651 1 2222 22 33455698888754
No 141
>PRK13328 pantothenate kinase; Reviewed
Probab=25.11 E-value=4.4e+02 Score=25.11 Aligned_cols=63 Identities=22% Similarity=0.176 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 400 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~ 400 (461)
...++-|++..+..+++.+++.-...-.|+++||.++ +++..+..+... .++-...|-+.++.
T Consensus 190 ~sG~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGGda~------~l~~~l~~~~~~--~p~LvL~GL~~i~~ 252 (255)
T PRK13328 190 SAGCLAAQAGLIERAWRDLAARWQAPVRLVLSGGAAD------AVAPALTVPHTR--HDNLVLLGLALIAA 252 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH------HHHhhCCCCCEE--CCCcHHHHHHHHHh
Confidence 3577777777777777777664212347999999853 466666777665 35567778777664
No 142
>PRK13329 pantothenate kinase; Reviewed
Probab=25.00 E-value=4.7e+02 Score=24.84 Aligned_cols=63 Identities=27% Similarity=0.313 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHHHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAV 401 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~ 401 (461)
...++-|++..+..+++.+++. +.+ -.|+++||.+ ++++..+..++.+ .++-...|-..++..
T Consensus 183 ~sG~~~g~~~~I~~~i~~~~~~~~~~-~~vilTGGda------~~l~~~l~~~~~~--~~~LvL~GL~~i~~~ 246 (249)
T PRK13329 183 TSGGTQAIAGAVERMFRHLAQHCGAE-PECLLTGGAA------WKLAPSLTVPFEL--VDNLVLDGLLVIAAR 246 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCH------HHHHhhcCCCCEE--CCCcHHHHHHHHHhh
Confidence 4588888888888888888764 322 3799999985 4577777777776 355677787776543
No 143
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=24.53 E-value=98 Score=29.65 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=26.6
Q ss_pred ccEEEEeccC--CCCHHHHHHHHhhhCCceee
Q 012530 355 IDTLLACGGL--AKNPLFLQQHADIIGCPIIL 384 (461)
Q Consensus 355 ~~~i~~~GGg--a~s~~w~Qi~Adv~g~pV~~ 384 (461)
.+-|+++||. +..++=.|-+|..+|+|++.
T Consensus 61 ~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~ 92 (255)
T COG1058 61 ADVVITTGGLGPTHDDLTAEAVAKALGRPLVL 92 (255)
T ss_pred CCEEEECCCcCCCccHhHHHHHHHHhCCCccc
Confidence 6779999974 68999999999999999987
No 144
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=24.38 E-value=3.1e+02 Score=27.02 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=26.8
Q ss_pred CccEEEEeccCCCCHHHHHHHHhhhCC---ceeecCCCCch-hHH
Q 012530 354 KIDTLLACGGLAKNPLFLQQHADIIGC---PIILPRENESV-LLG 394 (461)
Q Consensus 354 ~~~~i~~~GGga~s~~w~Qi~Adv~g~---pV~~~~~~e~~-alG 394 (461)
..++|+++||||. ++...+-+.++. .+.+++.++-+ +.|
T Consensus 272 ~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G 314 (318)
T PF06406_consen 272 DIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRG 314 (318)
T ss_dssp S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHH
T ss_pred cCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHH
Confidence 4678999999986 778888888774 67777776654 444
No 145
>PRK13326 pantothenate kinase; Reviewed
Probab=24.23 E-value=3.7e+02 Score=25.77 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHHH
Q 012530 330 YLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 399 (461)
Q Consensus 330 ~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA 399 (461)
...++-|.+..+..+++.+++. +. .-.++++||.+ ++++..+..+..+ .++-+..|-.++.
T Consensus 192 ~sGi~~g~~~~I~g~i~~~~~e~~~-~~~vv~TGG~a------~~l~~~~~~~~~~--~~~LvL~GL~~i~ 253 (262)
T PRK13326 192 NSGVIYQYKYLIEGVYHDLKRNYDR-EFNLIITGGNS------NLILPLISVDFIF--NLYLTLEGIRILG 253 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCH------HHHHhhCCCCcEE--CcccHHHHHHHHH
Confidence 3478888888888888888764 32 33799999965 4567777777765 3556666766553
No 146
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=24.18 E-value=2.3e+02 Score=27.60 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCC-----CHHHHHHH---Hhh-hCCceeecCC----CCchhHHH
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK-----NPLFLQQH---ADI-IGCPIILPRE----NESVLLGA 395 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~-----s~~w~Qi~---Adv-~g~pV~~~~~----~e~~alGa 395 (461)
.|+++.|++.=.+. ..+. ...++-|+++|-.++ +++...+. +.. ++..|...+. +| +|-||
T Consensus 253 ~~~~l~e~vvK~v~---tllp--s~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~Ke-aA~Ga 326 (374)
T COG2441 253 TYNALIEGVVKDVF---TLLP--STYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKE-AAEGA 326 (374)
T ss_pred HHHHHHHHHHHHHH---Hhcc--ccCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhh-hccch
Confidence 37899998865443 3332 245678999999987 33332222 222 3556654432 33 57899
Q ss_pred HHHH-HHhccccCCHHH
Q 012530 396 AILG-AVAAKRYSSLIE 411 (461)
Q Consensus 396 A~lA-~~~~G~~~~~~~ 411 (461)
|++| +.+-|.|.-+-+
T Consensus 327 AiiAnaiAGG~yrelvd 343 (374)
T COG2441 327 AIIANAIAGGLYRELVD 343 (374)
T ss_pred hhhhhhhcchhHHHHHH
Confidence 9888 455567654433
No 147
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=23.74 E-value=2.9e+02 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=14.9
Q ss_pred ccCCHHHHHHHhhcCCeEEcC
Q 012530 405 RYSSLIEAMKAMNAAGQVIHP 425 (461)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~P 425 (461)
-|.|+++|++++.+..-..+|
T Consensus 20 PF~s~~DA~~RLLPYHv~~~~ 40 (109)
T PF15249_consen 20 PFRSLEDAVERLLPYHVFQEP 40 (109)
T ss_pred CCCCHHHHHHHhcchhhhcCC
Confidence 367899999998865444444
No 148
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=23.28 E-value=6.5e+02 Score=25.18 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCC-CHHHHHHHHhhhC
Q 012530 319 LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHADIIG 379 (461)
Q Consensus 319 ~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~-s~~w~Qi~Adv~g 379 (461)
.+.+++|++ ||.+--|..++-++.-.. .....+++|+..|-..| ++.-|..+|=..+
T Consensus 273 ~~~s~eDia---~SlL~mIsnNIGqiAyl~-A~~~ni~rV~FgG~fiR~~~itM~tLsyAi~ 330 (371)
T KOG2201|consen 273 LSVSKEDIA---RSLLRMISNNIGQIAYLC-ALNENIKRVYFGGFFIRGHPITMKTLSYAIN 330 (371)
T ss_pred cccChHHHH---HHHHHHHHhhHHHHHHHH-HHHhCccEEEEeeeEEecCceehHHHHHHHH
Confidence 446788965 599999999998775443 33356889999998775 6777788776543
No 149
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=22.42 E-value=2.9e+02 Score=27.19 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=30.0
Q ss_pred CCCccEEEEeccCCCCHHHHHHHHhhhCC-ceeecCCCC-chhHHHHHH
Q 012530 352 GHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENE-SVLLGAAIL 398 (461)
Q Consensus 352 g~~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~~~~e-~~alGaA~l 398 (461)
+..+++|+++||||. ++...+.+.+.. .|.+++.++ +-|+|=..+
T Consensus 271 ~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 271 PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHh
Confidence 356889999999987 666777777765 344555544 556665443
No 150
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=21.25 E-value=1.5e+02 Score=29.25 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=38.1
Q ss_pred EEEeccCCCCHHHHHHHHhh---hCCcee-ecCCCCchhHHHHHHHHHhccccCCHHHHHHHh
Q 012530 358 LLACGGLAKNPLFLQQHADI---IGCPII-LPRENESVLLGAAILGAVAAKRYSSLIEAMKAM 416 (461)
Q Consensus 358 i~~~GGga~s~~w~Qi~Adv---~g~pV~-~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~ 416 (461)
+.+.|||+|--.-.+++..+ +|+|+. ..+.--++..|+.+.++.+.|. +.+|..+..
T Consensus 2 LsLDGGG~RGl~~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~--s~~e~~~~y 62 (312)
T cd07212 2 LCLDGGGIRGLVLIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGK--SLREARRLY 62 (312)
T ss_pred EEECCcHHHHHHHHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCC--CHHHHHHHH
Confidence 56789998876666665544 577752 3344456788988888888874 566665543
No 151
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=21.22 E-value=2.6e+02 Score=25.54 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=44.0
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCC--CCHHHHHHHHhhhCCceeecC
Q 012530 314 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA--KNPLFLQQHADIIGCPIILPR 386 (461)
Q Consensus 314 ~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga--~s~~w~Qi~Adv~g~pV~~~~ 386 (461)
.+-++..-+++|+. .++..-+..++ .|.+++.++++++.- |+|-....+|.-+|..|.-|+
T Consensus 166 lVEItS~ikrgDl~------------~i~rk~elYer~~gvki~~vivitpFihdr~p~~~kAmAe~mGIeii~p~ 229 (231)
T COG5493 166 LVEITSAIKRGDLP------------VIRRKKELYERAKGVKINKVIVITPFIHDRYPDRVKAMAERMGIEIIPPE 229 (231)
T ss_pred EEEehhhhhccchH------------HHHHHHHHHHHhcCCccceEEEEcccccccChHHHHHHHHHcCceecCCC
Confidence 34566666777763 23444444444 489999999999987 788888889988998887654
No 152
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=20.89 E-value=1.9e+02 Score=27.44 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=43.6
Q ss_pred EEEEecc-CCCC---HHHHHHHHhhhCCceeecCCCC-chhHHHH-HHHHHhccccCCHHHHHHHhhcCCeEEcC
Q 012530 357 TLLACGG-LAKN---PLFLQQHADIIGCPIILPRENE-SVLLGAA-ILGAVAAKRYSSLIEAMKAMNAAGQVIHP 425 (461)
Q Consensus 357 ~i~~~GG-ga~s---~~w~Qi~Adv~g~pV~~~~~~e-~~alGaA-~lA~~~~G~~~~~~~a~~~~~~~~~~~~P 425 (461)
.+.-+|| +.+. ....-+++..+|.||..-.... ++..|.+ ++...+.-.-.+.+++.+.+.+..-.|-+
T Consensus 5 D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~ 79 (252)
T PF00591_consen 5 DICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLF 79 (252)
T ss_dssp EEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEE
T ss_pred EEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEec
Confidence 4567787 6666 5666777777899998755433 2345665 77777766656788876666555555555
No 153
>PLN02666 5-oxoprolinase
Probab=20.52 E-value=3.9e+02 Score=32.02 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHH-hCCCCccE--EEEeccCCCCHHHHHHHHhhhCCc-eeecCC-CCchhHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCN-AHGHKIDT--LLACGGLAKNPLFLQQHADIIGCP-IILPRE-NESVLLGAAIL 398 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~-~~g~~~~~--i~~~GGga~s~~w~Qi~Adv~g~p-V~~~~~-~e~~alGaA~l 398 (461)
+|++-..-.+...+..+. +.|.+++. |++.||. -++..-.+|+.+|++ |.+|.. .-.+|+|+++.
T Consensus 462 ~i~~ia~~~m~~air~i~~~~G~dpr~~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~a 531 (1275)
T PLN02666 462 GFVRVANEAMCRPIRQLTEMKGYETANHALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGLA 531 (1275)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhh
Confidence 555555555555444443 24776654 4444443 368888999999999 878754 33467887653
No 154
>COG3621 Patatin [General function prediction only]
Probab=20.12 E-value=2.7e+02 Score=27.77 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=42.7
Q ss_pred CccEEEEeccCCCCHHHHH---HHHhhhCCcee-ecCCCCchhHHHHHHHHHhccccCC
Q 012530 354 KIDTLLACGGLAKNPLFLQ---QHADIIGCPII-LPRENESVLLGAAILGAVAAKRYSS 408 (461)
Q Consensus 354 ~~~~i~~~GGga~s~~w~Q---i~Adv~g~pV~-~~~~~e~~alGaA~lA~~~~G~~~~ 408 (461)
+.+-+.+.|||.|-.+..| +++.+.|.++. +.+.--++++|..+.++.++|.-++
T Consensus 8 k~rIlsldGGGvrG~i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~ks~~ 66 (394)
T COG3621 8 KYRILSLDGGGVRGAILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALGKSPR 66 (394)
T ss_pred ceeEEEecCCccccHHHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcCCCCc
Confidence 3556778899999877766 67778898885 5566667899999999999986543
Done!