Query 012530
Match_columns 461
No_of_seqs 235 out of 1307
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0q_A Xylulose kinase; xlylul 100.0 1.3E-79 4.4E-84 651.5 38.9 427 1-458 112-545 (554)
2 3ifr_A Carbohydrate kinase, FG 100.0 9E-79 3.1E-83 638.3 31.6 393 1-458 106-501 (508)
3 3ll3_A Gluconate kinase; xylul 100.0 2.4E-78 8.1E-83 634.5 32.1 393 1-458 100-494 (504)
4 3hz6_A Xylulokinase; xylulose, 100.0 5.1E-78 1.7E-82 633.0 31.0 390 1-454 103-504 (511)
5 3jvp_A Ribulokinase; PSI-II, N 100.0 8.6E-77 3E-81 631.7 37.2 409 1-459 127-552 (572)
6 2itm_A Xylulose kinase, xylulo 100.0 1.1E-74 3.7E-79 604.9 29.3 385 1-452 97-482 (484)
7 4e1j_A Glycerol kinase; struct 100.0 2.3E-72 8E-77 590.9 31.1 376 1-450 126-517 (520)
8 3h3n_X Glycerol kinase; ATP-bi 100.0 2.5E-72 8.7E-77 589.4 31.1 381 1-453 105-498 (506)
9 3g25_A Glycerol kinase; IDP007 100.0 2.6E-72 8.9E-77 588.9 30.8 380 1-452 106-498 (501)
10 4bc3_A Xylulose kinase; transf 100.0 6.4E-72 2.2E-76 590.2 30.7 382 1-454 140-534 (538)
11 2p3r_A Glycerol kinase; glycer 100.0 1.8E-72 6E-77 590.8 24.6 382 1-453 103-496 (510)
12 2d4w_A Glycerol kinase; alpha 100.0 2E-71 7E-76 582.5 30.3 382 1-454 102-499 (504)
13 2w40_A Glycerol kinase, putati 100.0 2.1E-71 7.2E-76 582.5 30.2 379 1-451 106-501 (503)
14 2zf5_O Glycerol kinase; hypert 100.0 7.4E-72 2.5E-76 585.1 25.3 386 1-459 102-494 (497)
15 2dpn_A Glycerol kinase; thermu 100.0 1.8E-70 6.1E-75 574.4 31.0 378 1-452 102-491 (495)
16 3i8b_A Xylulose kinase; strain 100.0 2.4E-69 8.3E-74 566.7 25.2 380 1-439 94-506 (515)
17 3ezw_A Glycerol kinase; glycer 100.0 3.6E-69 1.2E-73 568.0 23.9 381 1-450 104-494 (526)
18 3h6e_A Carbohydrate kinase, FG 100.0 6.6E-60 2.3E-64 490.3 25.1 360 1-448 97-470 (482)
19 2uyt_A Rhamnulokinase; rhamnos 100.0 2.1E-60 7.2E-65 497.8 18.2 367 1-447 103-486 (489)
20 1hux_A Activator of (R)-2-hydr 99.4 4.7E-13 1.6E-17 128.4 6.6 132 230-402 124-257 (270)
21 4ehu_A Activator of 2-hydroxyi 97.4 0.00033 1.1E-08 66.6 8.7 76 320-402 179-255 (276)
22 4b9q_A Chaperone protein DNAK; 97.3 0.00032 1.1E-08 74.5 7.9 86 322-407 301-387 (605)
23 2i7n_A Pantothenate kinase 1; 97.3 0.0022 7.6E-08 62.9 12.8 87 308-399 257-358 (360)
24 3qfu_A 78 kDa glucose-regulate 97.3 0.00054 1.9E-08 68.4 8.5 80 322-401 311-392 (394)
25 4gni_A Putative heat shock pro 97.2 0.00062 2.1E-08 68.5 8.3 81 322-402 312-401 (409)
26 3i33_A Heat shock-related 70 k 97.2 0.00063 2.1E-08 68.3 8.2 83 322-404 319-403 (404)
27 2ews_A Pantothenate kinase; PA 97.2 0.0032 1.1E-07 60.1 12.5 75 320-399 206-286 (287)
28 3h1q_A Ethanolamine utilizatio 97.1 0.00031 1.1E-08 66.5 4.0 72 323-398 199-271 (272)
29 1dkg_D Molecular chaperone DNA 96.9 0.0014 4.8E-08 65.2 7.0 79 322-400 301-380 (383)
30 2v7y_A Chaperone protein DNAK; 96.5 0.0045 1.5E-07 64.2 7.5 83 322-404 270-353 (509)
31 3d2f_A Heat shock protein homo 96.3 0.0048 1.6E-07 66.2 6.7 84 322-405 302-386 (675)
32 1yuw_A Heat shock cognate 71 k 96.1 0.0092 3.2E-07 62.5 7.4 83 322-404 298-382 (554)
33 2kho_A Heat shock protein 70; 95.4 0.0044 1.5E-07 65.7 1.6 83 322-404 301-384 (605)
34 1jce_A ROD shape-determining p 95.3 0.0071 2.4E-07 59.1 2.9 76 322-400 242-324 (344)
35 4a2a_A Cell division protein F 95.0 0.035 1.2E-06 56.0 6.7 65 322-386 290-360 (419)
36 3qbx_A Anhydro-N-acetylmuramic 94.9 0.098 3.3E-06 51.3 9.4 84 322-411 257-347 (371)
37 2ych_A Competence protein PILM 94.4 0.067 2.3E-06 52.7 7.3 64 324-387 274-339 (377)
38 3eno_A Putative O-sialoglycopr 94.1 0.2 6.9E-06 48.7 9.7 83 322-408 221-310 (334)
39 3cqy_A Anhydro-N-acetylmuramic 94.0 0.17 5.7E-06 49.7 8.8 75 322-403 264-344 (370)
40 2ivn_A O-sialoglycoprotein end 93.2 0.33 1.1E-05 47.1 9.5 82 322-407 216-304 (330)
41 3ttc_A HYPF, transcriptional r 93.0 0.4 1.4E-05 50.7 10.4 76 321-400 570-650 (657)
42 3vth_A Hydrogenase maturation 93.0 0.28 9.7E-06 52.8 9.3 77 322-402 665-748 (761)
43 4g9i_A Hydrogenase maturation 92.7 0.25 8.4E-06 53.5 8.4 81 322-406 677-764 (772)
44 2zgy_A Plasmid segregation pro 91.3 0.32 1.1E-05 46.7 6.7 65 329-399 251-319 (320)
45 3ven_A O-carbamoyltransferase 90.5 0.61 2.1E-05 48.5 8.2 79 323-405 280-361 (576)
46 4apw_A ALP12; actin-like prote 82.9 3.8 0.00013 39.4 8.6 68 331-401 255-324 (329)
47 2e2o_A Hexokinase; acetate and 82.7 2.4 8.1E-05 39.9 7.0 70 332-402 218-288 (299)
48 3en9_A Glycoprotease, O-sialog 77.9 6.8 0.00023 40.4 9.0 60 322-386 220-283 (540)
49 2fsj_A Hypothetical protein TA 77.3 1.7 5.9E-05 42.1 4.1 67 332-400 273-343 (346)
50 2ch5_A NAGK protein; transfera 72.0 12 0.00042 35.7 8.7 73 331-404 235-327 (347)
51 4htl_A Beta-glucoside kinase; 68.3 11 0.00039 35.2 7.3 49 354-402 237-292 (297)
52 3r8e_A Hypothetical sugar kina 68.2 11 0.00039 35.7 7.4 68 332-400 239-318 (321)
53 2yhw_A Bifunctional UDP-N-acet 65.8 24 0.00081 33.6 9.2 68 332-402 263-339 (343)
54 2gup_A ROK family protein; sug 65.4 16 0.00054 33.9 7.7 66 331-401 209-287 (292)
55 2aa4_A Mannac kinase, putative 63.7 11 0.00038 34.9 6.3 47 354-400 233-287 (289)
56 3vgl_A Glucokinase; ROK family 62.9 13 0.00044 35.2 6.7 72 332-404 231-315 (321)
57 2qm1_A Glucokinase; alpha-beta 62.5 16 0.00055 34.4 7.2 69 332-401 241-321 (326)
58 2fxu_A Alpha-actin-1, actin, a 61.2 5.2 0.00018 39.0 3.5 47 355-401 294-349 (375)
59 4db3_A Glcnac kinase, N-acetyl 59.9 14 0.00048 35.2 6.3 64 332-400 252-325 (327)
60 3o8m_A Hexokinase; rnaseh-like 59.9 19 0.00064 36.5 7.4 83 321-404 372-472 (485)
61 2yhx_A Hexokinase B; transfera 59.5 25 0.00087 35.3 8.3 83 321-404 346-445 (457)
62 1saz_A Probable butyrate kinas 59.0 21 0.00071 34.8 7.5 68 332-399 272-346 (381)
63 3htv_A D-allose kinase, alloki 58.7 40 0.0014 31.6 9.3 66 331-401 221-299 (310)
64 1zbs_A Hypothetical protein PG 58.2 15 0.0005 34.3 6.0 70 331-405 213-284 (291)
65 1sz2_A Glucokinase, glucose ki 57.9 18 0.00062 34.4 6.7 49 354-402 264-327 (332)
66 2d0o_A DIOL dehydratase-reacti 54.3 22 0.00074 36.6 6.6 84 312-397 503-592 (610)
67 1cza_N Hexokinase type I; stru 51.2 19 0.00065 39.7 6.2 50 356-405 408-463 (917)
68 2hoe_A N-acetylglucosamine kin 50.9 38 0.0013 32.8 7.9 65 332-401 297-371 (380)
69 1nbw_A Glycerol dehydratase re 46.5 21 0.00073 36.7 5.2 74 312-387 505-584 (607)
70 1z05_A Transcriptional regulat 45.9 47 0.0016 32.7 7.8 68 332-401 336-415 (429)
71 3vov_A Glucokinase, hexokinase 45.6 42 0.0014 31.3 7.0 70 332-402 216-296 (302)
72 1z6r_A MLC protein; transcript 44.0 56 0.0019 31.8 7.9 67 332-399 313-391 (406)
73 3epq_A Putative fructokinase; 43.5 45 0.0015 31.2 6.8 53 139-208 89-143 (302)
74 1zxo_A Conserved hypothetical 42.9 5.9 0.0002 37.1 0.4 63 332-400 212-277 (291)
75 1zc6_A Probable N-acetylglucos 42.7 16 0.00054 34.3 3.5 62 331-400 229-292 (305)
76 1eik_A RNA polymerase subunit 42.6 22 0.00074 26.3 3.3 35 104-154 22-56 (77)
77 2ap1_A Putative regulator prot 41.9 24 0.00084 33.3 4.7 46 354-399 269-324 (327)
78 2q2r_A Glucokinase 1, putative 41.7 40 0.0014 32.5 6.3 47 354-400 304-370 (373)
79 3f9m_A Glucokinase; hexokinase 41.3 32 0.0011 34.6 5.6 86 319-405 362-464 (470)
80 3js6_A Uncharacterized PARM pr 41.3 21 0.00072 34.5 4.2 47 354-403 290-338 (355)
81 1dw0_A Cytochrome C; asparagin 40.2 7.1 0.00024 31.1 0.5 33 33-65 78-111 (112)
82 1bdg_A Hexokinase; phosphotran 36.7 47 0.0016 33.3 6.0 47 357-403 395-448 (451)
83 1hmj_A RPB5, protein (subunit 35.8 21 0.00072 26.4 2.4 36 103-154 19-54 (78)
84 3hm8_A Hexokinase-3; glucose, 35.3 1.1E+02 0.0039 30.4 8.4 85 319-404 338-439 (445)
85 1woq_A Inorganic polyphosphate 31.8 42 0.0014 30.6 4.4 59 336-401 201-261 (267)
86 2nu8_B SCS-beta, succinyl-COA 30.5 1.2E+02 0.0041 29.5 7.7 65 354-418 310-383 (388)
87 1k8k_A ARP3, actin-like protei 29.9 15 0.00052 36.1 1.0 47 355-401 316-387 (418)
88 2fp4_B Succinyl-COA ligase [GD 28.0 1.6E+02 0.0055 28.7 8.1 66 354-419 317-391 (395)
89 4ayb_H DNA-directed RNA polyme 26.1 49 0.0017 24.8 3.0 33 105-153 29-61 (84)
90 2e1z_A Propionate kinase; TDCD 25.9 52 0.0018 32.5 4.0 47 332-378 308-355 (415)
91 3twe_A Alpha4H; unknown functi 25.7 91 0.0031 17.2 3.6 21 436-456 4-24 (27)
92 3khy_A Propionate kinase; csgi 25.4 67 0.0023 31.3 4.6 46 331-377 290-337 (384)
93 2iir_A Acetate kinase; transfe 25.1 64 0.0022 31.7 4.5 46 332-378 300-347 (403)
94 3cet_A Conserved archaeal prot 23.7 1.7E+02 0.0059 27.8 7.0 68 324-398 246-321 (334)
95 1g99_A Acetate kinase; alpha/b 21.7 53 0.0018 32.3 3.2 46 332-378 300-347 (408)
96 1cza_N Hexokinase type I; stru 20.5 80 0.0027 34.7 4.6 48 357-404 857-910 (917)
No 1
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=100.00 E-value=1.3e-79 Score=651.49 Aligned_cols=427 Identities=46% Similarity=0.818 Sum_probs=366.3
Q ss_pred CCchhHHHHHHHHccCchHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccccc
Q 012530 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWT 80 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~ 80 (461)
+|+|+.++++++++..++++++||++++++++++||+||++|+||+|+|+.+|++++|||.|+|||+...+
T Consensus 112 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~~s--------- 182 (554)
T 3l0q_A 112 MDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGHLFDLPDFLTWRATKDETRS--------- 182 (554)
T ss_dssp TCCTTHHHHHHHHHHTCGGGGGBTTCCCTTSHHHHHHHHHHHCHHHHHHEEEEEEHHHHHHHHHHSCCCEE---------
T ss_pred cccchHHHHHHHHHhHHHHHHHhCCCCChhhHHHHHHHHHHhChHHHHHhceEEcHHHHHHHHHhCCcccc---------
Confidence 69999999999988767899999999999999999999999999999999999999999999999997533
Q ss_pred cccccccccccccc--ccccccCCCCHHHHHHcCCCcccc---ccccccCccccCCCCccc-CccCHHHHHHcCCCCCCc
Q 012530 81 YLGHAHMQQMNEKG--FRDMEACGWDDEFWEEIGLGDLID---GHHAKIGRSVAFPGHPLG-SGLTPAAAKELGLVPGTP 154 (461)
Q Consensus 81 ~~~~~~~s~as~t~--l~d~~~~~W~~~ll~~~gi~~~~~---~~lp~l~~~~~~~g~~ig-~~v~~~~A~~~GL~~g~p 154 (461)
++|.++ +||.++++||+++|+.+||++.+. ++|| |+++++++++| . |++++|+++||++|||
T Consensus 183 --------~as~t~~~~~d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp---~~i~~~~~~~G~~-lt~~~A~~~GL~~g~p 250 (554)
T 3l0q_A 183 --------LCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIG---ATVKPMGAPLGHG-LSQRAASEMGLIPGTA 250 (554)
T ss_dssp --------HHHHHHHSCCBTTTTBCCHHHHHHHTCGGGGHHHHTTTC---SCEECTTCBCTTS-SCHHHHHHHTCCTTCE
T ss_pred --------ccchhhccccccccCCCCHHHHHHcCCccccchhHHhCC---CcccCCcCeeCcc-cCHHHHHHhCCCCCCe
Confidence 344444 378899999999999999986320 0234 34778899998 6 9999999999999999
Q ss_pred EeechhhhhhhccCccccc-CccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEeccc
Q 012530 155 VGTSLIDAHAGGVGVMESV-PESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGG 233 (461)
Q Consensus 155 V~~g~~D~~aa~~g~~~~~-~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (461)
|++|++|++|+++|+.|.. + + +.....++++.+++|||+++..++++|..+++.+.+++++..|+.|+++++
T Consensus 251 V~~g~gD~~aa~lg~~G~~~~------~-G~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 323 (554)
T 3l0q_A 251 VSVSIIDAHAGTIGILGASGV------T-GENANFDRRIALIGGTSTAHMAMSRSAHFISGIWGPYYSAILPEYWLNEGG 323 (554)
T ss_dssp EBCCEEHHHHHHHHHTTCCCT------T-SCCCCTTTEEEEECSSSEEEEEEESSCCCCTTSEEEEETSSSTTCEEEEEE
T ss_pred EEEeChHHHhHHhhccccccC------C-CccccccceEEEEecchheeeeecCCccccCCcceeecccccCCceEecch
Confidence 9999999999998853332 1 1 000000127889999999999999988877877766566777899999999
Q ss_pred ccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCcee
Q 012530 234 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 313 (461)
Q Consensus 234 ~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~ 313 (461)
++++|.+++||++.|....++...++..+.+.|+.|++++++++++. |....+++|++|+|||.|+|+|+|||++||+
T Consensus 324 ~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~gl~flP~~~Ger~P~~d~~arg~ 401 (554)
T 3l0q_A 324 QSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEP--ENIAFLTNDIHMLPYFHGNRSPRANPNLTGI 401 (554)
T ss_dssp ESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSG--GGGGGGGTTCCEECCTTCBCSSSCBTTCCCE
T ss_pred hhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCC--CccccccCceEEcccccCCCCCCCCCCCcEE
Confidence 99999999999999865445555555556789999999888775321 1000137999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhH
Q 012530 314 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLL 393 (461)
Q Consensus 314 ~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~al 393 (461)
|+|++..|++.|++|++||++|||||++|++++.|++.|.++++|+++||++||++|+||+|||+|+||++++..|++|+
T Consensus 402 ~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~~~~e~~al 481 (554)
T 3l0q_A 402 ITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGCAMLLPEESEAMLL 481 (554)
T ss_dssp ECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEESCSCHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEecCCCcchHH
Confidence 99999999999988889999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 394 GAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQ 458 (461)
Q Consensus 394 GaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~~~~ 458 (461)
|||++|++++|.|+|++++.+++++..++|+|. |+++++.|+++|++|+++|+++++++++|++
T Consensus 482 GAA~lA~~a~G~~~~~~~a~~~~~~~~~~~~P~-~~~~~~~Y~~~y~~y~~l~~~~~~~~~~~~~ 545 (554)
T 3l0q_A 482 GSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQ-TNKIKAYYDRKYRVFHQMYHDHMRYQALMQE 545 (554)
T ss_dssp HHHHHHHHHTTSSSSHHHHHHHHCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCcCCHHHHHHHhcCCCcEEeCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888898888999992 3689999999999999999999999999875
No 2
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=100.00 E-value=9e-79 Score=638.31 Aligned_cols=393 Identities=20% Similarity=0.289 Sum_probs=348.6
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+.++++++|||.|+|||+.++
T Consensus 106 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~l~~~dyl~~~LTG~~~~-------- 177 (508)
T 3ifr_A 106 SDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIATVCGSYDYINMLLTGERVV-------- 177 (508)
T ss_dssp TCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHHHHHHHHHHHCHHHHHTCSEEECHHHHHHHHHHCCCCE--------
T ss_pred cccChHHHHHHHHhhccHHHHHHHHCCCCChhhHHHHHHHHHHcCHHHHHHHhhhcCchHHHHHHhcCCccc--------
Confidence 5999999999999876 679999999999999999999999999999999999999999999999999753
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeec
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTS 158 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g 158 (461)
|+|+||+|++||+++++||+++|+.+||+.. +||+ ++.+++++| +|++++|+++||++|+||++|
T Consensus 178 -------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~LP~----i~~~~~~~G-~l~~~~a~~~Gl~~g~pV~~g 242 (508)
T 3ifr_A 178 -------DRNWALEGGFIDLASGTVEADLVALAHIPPS---AVPP----AHPTHRVLG-AVTAEAAALTGLPTGLPVYGG 242 (508)
T ss_dssp -------EHHHHHHHTCEETTTTEECHHHHHTTTSCGG---GSCC----EECTTSEEE-ECCHHHHHHHCCCTTCEEECC
T ss_pred -------cHhHhhcccCccCccCCCCHHHHHHcCCCHH---HCCC----CcCCCCeee-ccCHHHHHHhCCCCCCeEEEE
Confidence 5688999999999999999999999999975 4575 678899999 599999999999999999999
Q ss_pred hhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchh
Q 012530 159 LIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATG 238 (461)
Q Consensus 159 ~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 238 (461)
++|++|+++|+ +..+ +|++.+++|||+++.+++++|..++..+ .+++..++.|+++++++++|
T Consensus 243 ~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~g~~~~~G 305 (508)
T 3ifr_A 243 AADHIASALAA-GITR--------------PGDVLLKFGGAGDIIVASATAKSDPRLY--LDYHLVPGLYAPNGCMAATG 305 (508)
T ss_dssp EEHHHHHHHHT-TCCS--------------TTEEEEEESSSEEEEECBSCCCCBTTBB--CCBCSSTTCBCCEEEESSSH
T ss_pred CchHHHHHHhC-CCCC--------------CCcEEEEechhhhheeeCCCcccCCCcc--eeeeecCCceEEechhhhhH
Confidence 99999999999 5443 4899999999999999999887766633 24456789999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHhhccCC-HHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcC
Q 012530 239 ALLDYIIENHVASRSLANRAASRHVS-LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGM 317 (461)
Q Consensus 239 ~~l~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl 317 (461)
.+++|+++.|.. .+.+ .|+.|++++++. | ++++|++|+|||.|+|+|+|||++||+|+|+
T Consensus 306 ~~~~W~~~~~~~----------~~~~~~~~~l~~~a~~~------~---~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl 366 (508)
T 3ifr_A 306 SALNWLAKLLAP----------EAGEAAHAQLDALAAEV------P---AGADGLVCLPYFLGEKTPIHDPFASGTFTGL 366 (508)
T ss_dssp HHHHHHHHHHST----------TCTTHHHHHHHHHHHTS------C---TTGGGCEEECCTTCCC----CCCCCCEEESC
T ss_pred HHHHHHHHHHhh----------cCCCCCHHHHHHHHhcC------C---CCCCCeEEecCCCCCCCCCCCCCcCEEEECC
Confidence 999999998741 0111 588888877643 2 6899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHH
Q 012530 318 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAI 397 (461)
Q Consensus 318 ~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~ 397 (461)
+..|+++| ++||++|||||++|++++.|++.|.++++|+++||++||++|+||+||++|+||++++..|++|+|||+
T Consensus 367 ~~~~~~~~---l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~ 443 (508)
T 3ifr_A 367 SLSHTRGH---LWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRSRVWMGIMADVLQRPVQLLANPLGSAVGAAW 443 (508)
T ss_dssp CTTCCHHH---HHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEECCSTHHHHHHH
T ss_pred CCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCCCCchHHHHHH
Confidence 99999999 577999999999999999999888899999999999999999999999999999999989999999999
Q ss_pred HHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 398 LGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQ 458 (461)
Q Consensus 398 lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~~~~ 458 (461)
+|++++|.|+|++++ .++++..++|+| ++++++.|+++|++|+++|+++++.++.+.+
T Consensus 444 lA~~a~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~ 501 (508)
T 3ifr_A 444 VAAIGGGDDLGWDDV-TALVRTGEKITP--DPAKAEVYDRLYRDFSALYATLHPFFHRSRE 501 (508)
T ss_dssp HHHHHTCSSCCGGGG-GGGSEEEEEECC--CGGGHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCCCCCHHHH-HhhcCCCeEECc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999886 457788899999 9999999999999999999999998876654
No 3
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=100.00 E-value=2.4e-78 Score=634.52 Aligned_cols=393 Identities=20% Similarity=0.308 Sum_probs=346.7
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+.+|++++|||.|+|||+.++
T Consensus 100 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~-------- 171 (504)
T 3ll3_A 100 ADNCAKSIVQDAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQKWIGIKEYIIFRLTGKLVT-------- 171 (504)
T ss_dssp TCCTTHHHHHHHHHHTHHHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHHHHCCEEECHHHHHHHHHHSCCEE--------
T ss_pred CccCHHHHHHHHHhccCHHHHHHHHCCCCCcccHHHHHHHHHHcChHHHHHHhheeCHHHHHHHHHhCCccc--------
Confidence 6999999999999876 679999999999999999999999999999999999999999999999998753
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeec
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTS 158 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g 158 (461)
|+|+||+|++||+++++||+++|+.+||++. +||+ ++.+++++| +|++++|+++||++||||++|
T Consensus 172 -------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~LP~----i~~~~~~~G-~l~~~~a~~~Gl~~g~pV~~g 236 (504)
T 3ll3_A 172 -------DTTMAAGTGILNLKTLTWDQELLDILKIKKE---QLPK----IAQPTKVIF-PIKTEYVKKLGIDSDTKIILG 236 (504)
T ss_dssp -------EHHHHTTTTCBCTTTSSBCHHHHHHHTCCGG---GSCE----EECTTCEEC-CCCHHHHHHHTCCTTCEEEEE
T ss_pred -------chhHhhcccCeeCCCCCcCHHHHHHcCCCHH---HCCC----eeCCcceee-ccCHHHHHhcCCCcCCCEEEE
Confidence 5688999999999999999999999999975 4575 578899999 499999999999999999999
Q ss_pred hhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchh
Q 012530 159 LIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATG 238 (461)
Q Consensus 159 ~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 238 (461)
++|++|+++|+ |..+ +|++.+++|||+++.+++++|..++.... +.....++.|+++++++++|
T Consensus 237 ~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~G 300 (504)
T 3ll3_A 237 ASDGYLSTIGV-NAID--------------SDHCALNVGTSGAIRTIVDQPKIDPSASY-FCYPADKTHYLLGGPVNNGG 300 (504)
T ss_dssp EEHHHHHHHTT-TCCS--------------TTEEEEEESSSEEEEEEESSCCCCTTCCS-EEEEEETTEEEEEEEESCSH
T ss_pred ccHHHHHHHhC-CCCC--------------CCcEEEEechhhhheeeCCCcccCCCCce-EEEEeCCCeEEEEeehhhHH
Confidence 99999999999 5443 48999999999999999988876654322 22223367899999999999
Q ss_pred HHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcCC
Q 012530 239 ALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMT 318 (461)
Q Consensus 239 ~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl~ 318 (461)
.+++|+++.|...+ ..++.+.+++++ +| |+++|++|+|||.|+|+|+||+++||+|+|++
T Consensus 301 ~~~~W~~~~~~~~~-----------~~~~~~~~~a~~------~~---~g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~ 360 (504)
T 3ll3_A 301 IVFNWARQTLFDAD-----------ETPQDFLDVAQT------AP---AGSRNLIFLPYLGGERAPIWDANARGSFVGLT 360 (504)
T ss_dssp HHHHHHHHHHTCTT-----------CCHHHHHHHHHT------SC---TTGGGCEEECCTTCBCTTTCBTTCCEEEEEEC
T ss_pred HHHHHHHHHhccch-----------hHHHHHHHHHhc------CC---CCCCCeEEecCccCCCCCCCCCccCeEEECCC
Confidence 99999999885421 112222223332 23 68999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhHHHHHH
Q 012530 319 LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAIL 398 (461)
Q Consensus 319 ~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~l 398 (461)
..|++.| ++||++|||||++|++++.|++.+.++++|+++||++||++|+||+||++|+||++++..|++|+|||++
T Consensus 361 ~~~~~~~---l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~l 437 (504)
T 3ll3_A 361 RMHQKPE---MARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTMKEQQSGTLAAMFL 437 (504)
T ss_dssp TTCCHHH---HHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHHTSCEEEESCSCHHHHHHHHH
T ss_pred CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhhCCeEEecCCCCchhHHHHHH
Confidence 9999999 5679999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 399 GAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQ 458 (461)
Q Consensus 399 A~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~~~~ 458 (461)
|++++|.++|+++ ++++++..++|+| ++++++.|+++|++|+++|+++++.++.+++
T Consensus 438 A~~a~G~~~~~~~-~~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~l~~~l~~~~~~l~~ 494 (504)
T 3ll3_A 438 ARQALGLNQDLSE-IGQFAQADKVYFP--NPKEAATYQKLFPLYCEIRNALAASYGKFSN 494 (504)
T ss_dssp HHHHTTSCCSGGG-GGGTSCEEEEECC--CHHHHHHHHHHHHHHHHHHHHHGGGSGGGC-
T ss_pred HHHHcCccCCHHH-HHHhcCCCeEEcc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987 4677778899999 9999999999999999999999988776544
No 4
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=100.00 E-value=5.1e-78 Score=633.00 Aligned_cols=390 Identities=21% Similarity=0.286 Sum_probs=346.2
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeee-chhhhhhhhcCCCCCccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMD-LSDWLSYRATGDDTRSLCTTVC 77 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~-~~dyl~~~LTG~~~~~~~~~~~ 77 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+.+|++ ++|||.|+|||+.++
T Consensus 103 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~l~~~~dyl~~~LTG~~~~------- 175 (511)
T 3hz6_A 103 SDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHAT------- 175 (511)
T ss_dssp TCCCCHHHHHHHHHHHCHHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTTCCEEECSHHHHHHHHHHSCCEE-------
T ss_pred CCCCHHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHHHHHHhcCcHHHHHHHHhCCcee-------
Confidence 6999999999998875 679999999999999999999999999999999999999 999999999998753
Q ss_pred cccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEee
Q 012530 78 KWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT 157 (461)
Q Consensus 78 ~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~ 157 (461)
|+|+||+|++||+++++||+++|+.+||++. +||+ ++.+++++| +|++++|+++||++||||++
T Consensus 176 --------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~LP~----i~~~~~~~G-~l~~~~a~~~Gl~~g~pV~~ 239 (511)
T 3hz6_A 176 --------DRTNASTTGLYRPKDDAWHVELLADYGFSLD---LMPR----LLEPGEQVG-GVSALAARQTGFVSGTPVLC 239 (511)
T ss_dssp --------CHHHHHHTTCEETTTTEECHHHHHHTTCCGG---GSCE----ECCTTSEEE-ECCHHHHHHHCCCTTCEEEC
T ss_pred --------eHhHhhcccceeCCCCCcCHHHHHHhCCCHH---HCCC----CcCCCCccc-ccCHHHHHhhCCCCCCeEEE
Confidence 5688999999999999999999999999975 4575 578899999 59999999999999999999
Q ss_pred chhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeecc-Ccccc-CCccccccccccCCeeEeccccc
Q 012530 158 SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-NKLFI-PGVWGPFWSAMVPKFWLTEGGQS 235 (461)
Q Consensus 158 g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (461)
|++|++|+++|+ +..+ +|++.+++|||+++..+++ +|..+ +......+++..++.|+.+++++
T Consensus 240 g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 304 (511)
T 3hz6_A 240 GLGDAGAATLGV-GVLD--------------DEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVL 304 (511)
T ss_dssp CEEHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSSTTEEEEEEEES
T ss_pred ECchHHHHHHhC-CCCC--------------CCcEEEEecchhhheeecCCeecccCCCCceEEEEEecCCceEEEeehh
Confidence 999999999999 5443 3899999999999999888 88766 55433334466788877779999
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCC---CCCeEEccCCCCCCCCCCCCCCce
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAAL---TEDIHVLPDFHGNRSPIADPKSKG 312 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g---~~gl~f~P~l~Ger~P~~d~~a~g 312 (461)
++|.+++|+++.|... ....|+.|++++++.+ |+ ++|++|+|||+|+|+|+||+++||
T Consensus 305 ~~G~~~~W~~~~~~~~----------~~~~~~~l~~~a~~~~---------~g~~~~~gl~~~P~~~Ger~P~~d~~arg 365 (511)
T 3hz6_A 305 NAGNILQWALTLVGHR----------PGEDCAEYFHMAAAEV---------QGVTVPDGLLFVPYLHAERCPVELPAPRG 365 (511)
T ss_dssp SSHHHHHHHGGGGTCC----------TTSCSHHHHHHHHHHH---------TTCCCCTTCEEEEESSCBCSSSCBSSCEE
T ss_pred hHHHHHHHHHHHhccc----------ccccHHHHHHHHHhCC---------CCCCCCCCEEEeCCCCCCCCCCCCCccce
Confidence 9999999999987510 0135788888877654 56 899999999999999999999999
Q ss_pred eEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCce-eecCCCCch
Q 012530 313 IICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPI-ILPRENESV 391 (461)
Q Consensus 313 ~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV-~~~~~~e~~ 391 (461)
+|+|++..|+++| ++||++|||||++|++++.|++ |. +++|+++||++||++|+||+||++|+|| ++++..|++
T Consensus 366 ~~~Gl~~~~~~~~---l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~ 440 (511)
T 3hz6_A 366 ALLGVTGATTRAQ---ILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHP 440 (511)
T ss_dssp EEECCCTTCCHHH---HHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCCGGGHH
T ss_pred EEEcCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecCCCCch
Confidence 9999999999999 5779999999999999999998 88 9999999999999999999999999999 999999999
Q ss_pred hHHHHHHHHHhccccCCHHHHHHHh---hcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 392 LLGAAILGAVAAKRYSSLIEAMKAM---NAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRS 454 (461)
Q Consensus 392 alGaA~lA~~~~G~~~~~~~a~~~~---~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~ 454 (461)
|+|||++|++++|.++|++++.+++ ++..++|+| ++++++.|+++|++|+++|+++++..+
T Consensus 441 alGaA~lA~~a~G~~~~~~~~~~~~~~~~~~~~~~~P--~~~~~~~y~~~y~~~~~~~~~l~~~~~ 504 (511)
T 3hz6_A 441 LRGLAALAAVELEWSHSIQDFLREADLREPASNILHP--QPCDEGRRRRKFERFKQCVETLGRLDE 504 (511)
T ss_dssp HHHHHHHHHHHTTSCSCHHHHHHHHHTC---CCCBCC--CCCCHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCCcCCHHHHHHHhhccCCCCeEECc--CHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999998888888 888899999 999999999999999999999886543
No 5
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=100.00 E-value=8.6e-77 Score=631.72 Aligned_cols=409 Identities=26% Similarity=0.422 Sum_probs=356.0
Q ss_pred CCchhHHHHHHHHccC----chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccc
Q 012530 1 MDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTV 76 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~ 76 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+||++|+||+|+|+.+|++++|||.|+|||+.++
T Consensus 127 ~D~R~~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~------ 200 (572)
T 3jvp_A 127 KHHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAKVWQILDEAEDVYNRTDQFLEATDWIVSQMTGKIVK------ 200 (572)
T ss_dssp TCCTTHHHHHHHHHHHHHHTCTTGGGGTTCCCSSSHHHHHHHHHHHHHHHHHHCSEEEEHHHHHHHHHHSSCCE------
T ss_pred CccchHHHHHHHHHhccccHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHHHhheEecHHHHHHHHhcCCcee------
Confidence 5999999999998752 578999999999999999999999999999999999999999999999999753
Q ss_pred ccccccccccccccccccccccccCCC-CHHHHHHcCCCcc-c-cccccccCccccCCCCcccCccCHHHHHHcCCCCCC
Q 012530 77 CKWTYLGHAHMQQMNEKGFRDMEACGW-DDEFWEEIGLGDL-I-DGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 153 (461)
Q Consensus 77 ~~~~~~~~~~~s~as~t~l~d~~~~~W-~~~ll~~~gi~~~-~-~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~ 153 (461)
|+|+||+|++|| ++++| |+++|+.+|++.. + .++| +|+++.+++++| +|++++|+++||++|+
T Consensus 201 ---------d~s~As~t~l~d-~~~~W~~~ell~~~g~~l~~i~~~~L---~p~i~~~~~~~G-~l~~~~A~~~GL~~g~ 266 (572)
T 3jvp_A 201 ---------NSCTAGYKAIWH-KREGYPSNEFFKALDPRLEHLTTTKL---RGDIVPLGERAG-GLLPEMAEKMGLNPGI 266 (572)
T ss_dssp ---------EHHHHHHHSCCB-TTTBSCCHHHHHTTCGGGTTSTTTTT---CSCEECTTSEEE-ECCHHHHHHHTSCTTC
T ss_pred ---------ehhhccccceeC-CCCCcCCHHHHHHhCcccccCCHhHC---CCccCCcCcccc-ccCHHHHHHhCCCCCC
Confidence 467899999999 99999 9999999985210 0 0123 234788999999 5999999999999999
Q ss_pred cEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEeccc
Q 012530 154 PVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGG 233 (461)
Q Consensus 154 pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (461)
||++|++|++|+++|+ |... +|++.+++|||+++..+++++...++.+..+..+..|+.|.++++
T Consensus 267 pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~ 331 (572)
T 3jvp_A 267 AVAVGNVDAHAAVPAV-GVTT--------------PGKLVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAG 331 (572)
T ss_dssp EEECCEETTTTHHHHT-TCCS--------------SEEEEEEESSSEEEEEEESSCCCCTTCSEEEETSSSTTSEEEEEE
T ss_pred eEEEeCchHHHHHhhC-CCCC--------------CCcEEEEecchhheeeecCCCccCCCceeeccCccCCCcEEEeeh
Confidence 9999999999999999 5443 489999999999888888776555554433334556899999999
Q ss_pred ccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCcee
Q 012530 234 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 313 (461)
Q Consensus 234 ~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~ 313 (461)
++++|.+++||+++|.. .+....++..+.+.|+.|++++++. | |+++|++|+|||.|||+|+|||++||+
T Consensus 332 ~~~~G~~~~W~~~~~~~-~~~~~~~~~~g~~~~~~l~~~a~~~------~---~g~~gl~~lP~~~Ger~P~~d~~arg~ 401 (572)
T 3jvp_A 332 QSAVGDIFAWFVKHGVS-AATFDEAQEKGVNVHALLEEKASQL------R---PGESGLLALDWWNGNRSILVDTELSGM 401 (572)
T ss_dssp ESCSHHHHHHHHHHTSB-HHHHHHHHHTTBCHHHHHHHHHTSS------C---TTSSCCEEECCTTCCCTTTCCSSCCEE
T ss_pred hhhHHHHHHHHHHhccc-hhhHHHHHhcCCCHHHHHHHHHHhC------C---CCCCCeEeCCccCCCCCCCCCCCcCEE
Confidence 99999999999999864 2333444455677899999877653 2 689999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCC-CCHHHHHHHHhhhCCceeecCCCCchh
Q 012530 314 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA-KNPLFLQQHADIIGCPIILPRENESVL 392 (461)
Q Consensus 314 ~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga-~s~~w~Qi~Adv~g~pV~~~~~~e~~a 392 (461)
|+|++..|+++| ++||++|||||++|++++.|++.|.++++|+++||++ ||++|+||+||++|+||+++...|++|
T Consensus 402 ~~Gl~~~~t~~~---l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~ks~~~~Qi~ADv~g~pV~~~~~~e~~a 478 (572)
T 3jvp_A 402 LLGYTLQTKPEE---IYRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVTNREIKVAASKQTPA 478 (572)
T ss_dssp EEEECTTCCHHH---HHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEESSHHHHCHHHHHHHHHHHTSCEEEBCCSSHHH
T ss_pred EECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCcCEEEEEcCchhhCHHHHHHHHHHHCCeeEecCCCccHH
Confidence 999999999999 5789999999999999999998889999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcc----ccCCHHHHHHHhhcC-CeEEcCCCChhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Q 012530 393 LGAAILGAVAAK----RYSSLIEAMKAMNAA-GQVIHPSKDPKVKKYHDAKYLIFRELFEQQV----SQRSIMAQA 459 (461)
Q Consensus 393 lGaA~lA~~~~G----~~~~~~~a~~~~~~~-~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~----~~~~~~~~~ 459 (461)
+|||++|++++| .|+|++++.+.+++. .++|+| ++++++.|+++|++|+++|+.++ +.++.++++
T Consensus 479 lGaA~lA~~a~G~~~~~~~~~~e~~~~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~l~~~l~~~~~~~~~~l~~~ 552 (572)
T 3jvp_A 479 LGAAMFASVAAGSEVGGYDSIEEAAKKMGRVKDETFKP--IPEHVAIYEKLYQEYVTLHDYFGRGANDVMKRLKAL 552 (572)
T ss_dssp HHHHHHHHHHHCSSSSSCSCHHHHHHHHCCBCSCCBCC--CHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHhhccCCeEEee--CHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999 999999998888764 578999 99999999999999999999986 466666543
No 6
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=100.00 E-value=1.1e-74 Score=604.94 Aligned_cols=385 Identities=25% Similarity=0.331 Sum_probs=331.7
Q ss_pred CCchhHHHHHHHHccCchHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccccc
Q 012530 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWT 80 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~ 80 (461)
+|+|+.++++++++....++++||+++++.++++||+|+++|+||+|+++.++++++|||.|+|||+.++
T Consensus 97 ~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~l~~~d~l~~~LTG~~~t---------- 166 (484)
T 2itm_A 97 NDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFAS---------- 166 (484)
T ss_dssp TCCTTHHHHHHHHHHCTTHHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCCEEECHHHHHHHHHHSCCEE----------
T ss_pred cccCcHHHHHHHHHhHHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhheeCcHHHHHHHHhCCcee----------
Confidence 5999999999998876567888999999999999999999999999999999999999999999998653
Q ss_pred ccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEeechh
Q 012530 81 YLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLI 160 (461)
Q Consensus 81 ~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~g~~ 160 (461)
|+|+||+|++||+++++||+++|+.+||+.. .||+ ++.+++++| +|++++|+++||+ |+||++|+|
T Consensus 167 -----d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~lp~----i~~~~~~~G-~~~~~~a~~~Gl~-g~pV~~g~~ 232 (484)
T 2itm_A 167 -----DMSDAAGTMWLDVAKRDWSDVMLQACDLSRD---QMPA----LYEGSEITG-ALLPEVAKAWGMA-TVPVVAGGG 232 (484)
T ss_dssp -----EHHHHHTTTCEETTTTEECHHHHHTTTCCGG---GSCE----EECTTSEEE-ECCHHHHHHHTSC-CCEEECCEE
T ss_pred -----eHHHhhccccccCCCCCcCHHHHHHcCCCHH---HCCC----ccCCcceee-ccCHHHHHHhCCC-CCeEEEEch
Confidence 5688999999999999999999999999975 3575 578899999 5999999999999 999999999
Q ss_pred hhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccccchhHH
Q 012530 161 DAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL 240 (461)
Q Consensus 161 D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 240 (461)
|++|+++|+ +... +|++.+++|||+++..++++|..++......+++..++.|+++++++++|.+
T Consensus 233 D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~ 297 (484)
T 2itm_A 233 DNAAGAVGV-GMVD--------------ANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASC 297 (484)
T ss_dssp HHHHHHHHH-TCCS--------------TTCEEEEESSSEEEEEECSSCCCCCSSSCEEEECSSTTCEEEEEEECCHHHH
T ss_pred HHHHHHHhC-CCCC--------------CCcEEEEccchheeEEecCCCccCcccceEEeecccCCeeeeeehhhhHHHH
Confidence 999999998 4443 3789999999999988888776554322222335568899999999999999
Q ss_pred HHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEEcCCCC
Q 012530 241 LDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLD 320 (461)
Q Consensus 241 l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~Gl~~~ 320 (461)
++|+++.|.. ..|+.+++++++. | ++++|++|+|||.|+|+|+||+++||+|+|++..
T Consensus 298 ~~W~~~~~~~-------------~~~~~~~~~a~~~------~---~~~~gl~~lP~~~G~r~P~~~~~a~g~~~Gl~~~ 355 (484)
T 2itm_A 298 LDWAAKLTGL-------------SNVPALIAAAQQA------D---ESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQ 355 (484)
T ss_dssp HHHHHHHTTC-------------CSHHHHHHHGGGC------C---TTSCCCEEEEEEC--------CCEEEEEEEEETT
T ss_pred HHHHHHhcCc-------------ccHHHHHHHHhcC------C---CCCCCeEEeCCCCCCCCCCCCCCCceEEEcCCCC
Confidence 9999998742 2366666655432 2 6899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCc-hhHHHHHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES-VLLGAAILG 399 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~-~alGaA~lA 399 (461)
|++.| ++||++|||||++|++++.|++.|.++++|+++||++||++|+||+||++|+||++++..|. +|+|||++|
T Consensus 356 ~~~~~---~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA 432 (484)
T 2itm_A 356 HGPNE---LARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_dssp CCHHH---HHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHH
Confidence 99999 56799999999999999999988888899999999999999999999999999999998886 899999999
Q ss_pred HHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012530 400 AVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ 452 (461)
Q Consensus 400 ~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~ 452 (461)
++++|.++|++++.+.+ ...++|+| ++++++.|+++|++|+++|++++++
T Consensus 433 ~~~~g~~~~~~~~~~~~-~~~~~~~P--~~~~~~~y~~~y~~~~~~~~~~~~~ 482 (484)
T 2itm_A 433 QIAANPEKSLIELLPQL-PLEQSHLP--DAQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_dssp HHHHCTTSCHHHHSCCC-CEEEEECC--CHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHcCCcCCHHHHHHhc-CCCeEECC--CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999875543 45678999 9999999999999999999988764
No 7
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.3e-72 Score=590.93 Aligned_cols=376 Identities=18% Similarity=0.258 Sum_probs=320.0
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcCC--CCCcc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATGD--DTRSL 72 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~--~~~~~ 72 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+++ |++++|||.|+|||+ ..
T Consensus 126 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~--- 202 (520)
T 4e1j_A 126 QDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFC--- 202 (520)
T ss_dssp TCCTTHHHHHHHHHTTCHHHHHHHHSSCSSTTSHHHHHHHHHHHSTTHHHHHHTTCEEEEEHHHHHHHHHTTTCCCE---
T ss_pred ccCCHHHHHHHHHhcccHHHHHHHHCCCCCchhHHHHHHHHHHcChHHHHHHhcCCeEecCHHHHHHHHhcCCCeee---
Confidence 5999999999999875 679999999999999999999999999999999975 668999999999997 32
Q ss_pred ccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCC
Q 012530 73 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPG 152 (461)
Q Consensus 73 ~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g 152 (461)
+|+|+||+|++||+++++||+++|+.+||++. +||+ ++.+++++|. ++++ ||++|
T Consensus 203 ------------td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~LP~----i~~~~~~~G~-~~~~-----~l~~g 257 (520)
T 4e1j_A 203 ------------TDATNASRTLLYNIAENAWDDELTEVLRVPKE---MLPE----VKDCAADFGV-TDPS-----LFGAA 257 (520)
T ss_dssp ------------EEHHHHTTSSSEETTTTEECHHHHHHHTCCGG---GSCE----EECSBSCCCB-CCHH-----HHTSC
T ss_pred ------------ecHHHhhhhcccccccCCCCHHHHHHcCCCHH---HCCc----eecCCCceee-eChh-----hCCCC
Confidence 25789999999999999999999999999975 4575 5788999994 8874 56789
Q ss_pred CcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeec-cCccccCC-ccccccccccC--Cee
Q 012530 153 TPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS-RNKLFIPG-VWGPFWSAMVP--KFW 228 (461)
Q Consensus 153 ~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~-~~~~~~~~~~~--~~~ 228 (461)
+||++|++|++|+++|+ |... +|++.+++|||+++...+ ++|..++. .+.. +++..+ +.|
T Consensus 258 ~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 321 (520)
T 4e1j_A 258 IPILGVAGDQQAATIGQ-ACFK--------------PGMLKSTYGTGCFALLNTGKDMVRSKNRLLTT-IAYRLDGETTY 321 (520)
T ss_dssp CBEEEECCHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEECTTCCCCCSSSCEEE-EEEEETTEEEE
T ss_pred CeEEEECCcHHHHHHhC-CCCC--------------CCcEEEEecCchheEEecCCccccCCCceeeE-EeEecCCCceE
Confidence 99999999999999999 5443 489999999999877766 66654433 2221 222222 479
Q ss_pred EecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCC
Q 012530 229 LTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 308 (461)
Q Consensus 229 ~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~ 308 (461)
.++++++++|.+++|+++.|... ..|+.+++++++. |+++|++|+|||.|+|+|+||+
T Consensus 322 ~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~~----------~~~~gl~~lP~l~Ger~P~~d~ 379 (520)
T 4e1j_A 322 ALEGSIFVAGAAVQWLRDGLKVI------------KAAPDTGSLAESA----------DPSQEVYLVPAFTGLGAPHWDP 379 (520)
T ss_dssp EEEEEESCSHHHHHHHHHTTCCC-----------------CHHHHHTS----------CTTCCCEEECCTTCBCTTTCBT
T ss_pred EEcchHhhHHHHHHHHHHHcCCc------------ccHHHHHHHHhcC----------CCCCcEEEEcCccCCCCCCCCC
Confidence 99999999999999999987531 2366676665532 4689999999999999999999
Q ss_pred CCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCccEEEEeccCCCCHHHHHHHHhhhCCceee
Q 012530 309 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH----GHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL 384 (461)
Q Consensus 309 ~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~----g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~ 384 (461)
++||+|+|++..|++.| ++||++|||||++|++++.|++. | ++++|+++||++||++|+||+||++|+||++
T Consensus 380 ~arg~~~Gl~~~~~~~~---l~RAvlEgia~~~r~~l~~l~~~~~~~g-~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~ 455 (520)
T 4e1j_A 380 DARGAIFGMTRNTGPAE---FARAALEAVCYQTRDLLEAMHKDWRRNG-NDTVLRVDGGMVASDWTMQRLSDLLDAPVDR 455 (520)
T ss_dssp TCCCEEEEECTTCCHHH---HHHHHHHHHHHHHHHHHHHHHHHCC------CCEEEESGGGGCHHHHHHHHHHHTSCEEE
T ss_pred CCCEEEecccCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhhccCC-CcceEEEeCccccCHHHHHHHHHHhCCeEEe
Confidence 99999999999999999 56799999999999999999886 6 8899999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 012530 385 PRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQV 450 (461)
Q Consensus 385 ~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~ 450 (461)
++..|++|+|||++|++++|.|+|++++. ++++..++|+| ++++++ |+++|++|+++|++.+
T Consensus 456 ~~~~e~~alGAA~lA~~a~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~-~~~~y~~~~~~~~~~~ 517 (520)
T 4e1j_A 456 PVILETTALGVAWLAGSRAGVWPNQEAFA-KSWARDRRFEP--HMDEAT-RKVKLKGWRSAVKRTL 517 (520)
T ss_dssp ESCCCHHHHHHHHHHHHHHTSSCCHHHHH-HTCCEEEEECC--CSCHHH-HHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHcCCcCCHHHHH-hhcCCCeEECC--CCCHHH-HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999874 66677889999 888776 7999999999998865
No 8
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=100.00 E-value=2.5e-72 Score=589.38 Aligned_cols=381 Identities=17% Similarity=0.276 Sum_probs=328.1
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcCC--CCCcc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATGD--DTRSL 72 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~--~~~~~ 72 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+++++ |++++|||.|+|||+ ..+
T Consensus 105 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~t-- 182 (506)
T 3h3n_X 105 QSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVT-- 182 (506)
T ss_dssp TCCTTHHHHHHHHHTTCHHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHHHHHTTCEEEECHHHHHHHHHTTTSCCEE--
T ss_pred cCcchHHHHHHHHhccCHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHHHHhcCCeEEecHHHHHHHHhcCCceeee--
Confidence 6999999999999875 679999999999999999999999999999999986 778999999999995 332
Q ss_pred ccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCC
Q 012530 73 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPG 152 (461)
Q Consensus 73 ~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g 152 (461)
|+|+||+|++||+++++||+++|+.+||++. +||+ ++.+++++| .+++++ .+| +|
T Consensus 183 -------------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~LP~----i~~~~~~~G-~~~~~~--~lg--~g 237 (506)
T 3h3n_X 183 -------------DYSNASRTMLYNIHKLEWDQEILDLLNIPSS---MLPE----VKSNSEVYG-HTRSYR--FYG--SE 237 (506)
T ss_dssp -------------EHHHHHTTTSEETTTTEECHHHHHHTTCCGG---GCCE----EECSEEEEE-ECCGGG--TTT--CC
T ss_pred -------------EHHHhhhhhCeecCCCCcCHHHHHHcCcCHH---HCCc----eecCCCcce-eeChHH--hcC--CC
Confidence 5789999999999999999999999999975 4575 578899999 499886 366 79
Q ss_pred CcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeec-cCccccC-CccccccccccCC--ee
Q 012530 153 TPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS-RNKLFIP-GVWGPFWSAMVPK--FW 228 (461)
Q Consensus 153 ~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--~~ 228 (461)
|||++|++|++|+++|+ +... +|++.+++|||+++...+ ++|..++ +.+. .+++..++ .|
T Consensus 238 ~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 301 (506)
T 3h3n_X 238 VPIAGMAGDQQAALFGQ-MAFE--------------KGMIKNTYGTGAFIVMNTGEEPQLSDNDLLT-TIGYGINGKVYY 301 (506)
T ss_dssp CEEEEEEEHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEEEETCCCSCCTTSEE-EEEEEETTEEEE
T ss_pred CeEEEECCcHHHHHHhC-CCCC--------------CCcEEEEecchheeeeecCCccccCCCceEE-EeeeecCCCCEE
Confidence 99999999999999998 5443 489999999999876655 3444333 2222 22333454 69
Q ss_pred EecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCC
Q 012530 229 LTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 308 (461)
Q Consensus 229 ~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~ 308 (461)
.++++++++|.+++|+++.|.. ...|+.+++++++. | ..+|++|+|||.|+|+|+||+
T Consensus 302 ~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~~------~----~~~gl~~~P~~~Ger~P~~d~ 359 (506)
T 3h3n_X 302 ALEGSIFVAGSAIQWLRDGLRM------------IETSPQSEELAAKA------K----GDNEVYVVPAFTGLGAPYWDS 359 (506)
T ss_dssp EEEEEECCSSHHHHHHHHTSCC------------CSSTTHHHHHHTTC------C----SCSCCEEECCTTCBCTTTCBT
T ss_pred EEecchhhHHHHHHHHHHHcCC------------CCcHHHHHHHHhcC------C----CCCceEEeccccCCCCCccCC
Confidence 9999999999999999998753 13466676665432 2 359999999999999999999
Q ss_pred CCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 309 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 309 ~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
++||+|+|++..|++.| ++||++|||||++|++++.|++ .|.++++|+++||++||++|+||+||++|+||++++.
T Consensus 360 ~arg~~~Gl~~~~~~~~---l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~ 436 (506)
T 3h3n_X 360 EARGAVFGLTRGTTKED---FVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAAN 436 (506)
T ss_dssp TCCCEEECCCTTCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHCSCCCEEEEESGGGGCHHHHHHHHHHHTSEEEECSS
T ss_pred CCCEEEEccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEecccccCHHHHHHHHHHhCCeEEecCC
Confidence 99999999999999999 5679999999999999999987 4889999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012530 388 NESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQR 453 (461)
Q Consensus 388 ~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~ 453 (461)
.|++|+|||++|++++|.|+|++++ .++++..++|+| ++++. .|+++|++|+++|++++.|.
T Consensus 437 ~e~~alGaA~lA~~a~G~~~~~~~~-~~~~~~~~~~~P--~~~~~-~~~~~y~~~~~~~~~~~~~~ 498 (506)
T 3h3n_X 437 LETTALGAAYLAGLAVGFWKDLDEL-KSMAEEGQMFTP--EMPAE-ERDNLYEGWKQAVAATQTFK 498 (506)
T ss_dssp SCHHHHHHHHHHHHHTTSSCSHHHH-HTTCCCCCEECC--CSCHH-HHHHHHHHHHHHHHHHHHCC
T ss_pred CcchhHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECC--CCCHH-HHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999986 567788899999 87665 58999999999999998763
No 9
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=100.00 E-value=2.6e-72 Score=588.91 Aligned_cols=380 Identities=17% Similarity=0.254 Sum_probs=327.4
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcCC--CCCcc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATGD--DTRSL 72 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~--~~~~~ 72 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+++ |++++|||.|+|||. ..+
T Consensus 106 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~l~~~~~dyl~~~LTG~~~~~t-- 183 (501)
T 3g25_A 106 QSRQTQSICSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKAAHIT-- 183 (501)
T ss_dssp TCCTTHHHHHHHHHTTCHHHHHHHHSCCSSTTSHHHHHHHHHHHSTTHHHHHHTTCEEEEEHHHHHHHHHTTTSCCEE--
T ss_pred ccCChHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhCHHHHHHHhcCCeEEecHHHHHHHHhcCCCeeee--
Confidence 6999999999999875 679999999999999999999999999999999987 778999999999994 432
Q ss_pred ccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCC
Q 012530 73 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPG 152 (461)
Q Consensus 73 ~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g 152 (461)
|+|+||+|++||+++++||+++|+.+||++. +||+ ++.+++++| .++++. .+| +|
T Consensus 184 -------------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~LP~----i~~~~~~~G-~~~~~~--~~g--~g 238 (501)
T 3g25_A 184 -------------DYSNASRTLMFNIHDLEWDDELLELLTVPKN---MLPE----VKASSEVYG-KTIDYH--FYG--QE 238 (501)
T ss_dssp -------------EHHHHTTSSSEETTTTEECHHHHHHHTCCGG---GCCE----EECSEEEEE-ECCGGG--TTT--CC
T ss_pred -------------eHHHhhcccCeeCCCCCCCHHHHHHhCcCHH---HCCc----eecCCCcee-ccchHH--hCC--CC
Confidence 5789999999999999999999999999975 4575 578899999 498864 455 89
Q ss_pred CcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeecc-CccccC-CccccccccccCC--ee
Q 012530 153 TPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-NKLFIP-GVWGPFWSAMVPK--FW 228 (461)
Q Consensus 153 ~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~ 228 (461)
+||++|++|++|+++|+ +... +|++.+++|||+++.+.+. +|..++ +.+. .+++..++ .|
T Consensus 239 ~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 302 (501)
T 3g25_A 239 VPIAGVAGDQQAALFGQ-ACFE--------------RGDVKNTYGTGGFMLMNTGDKAVKSESGLLT-TIAYGIDGKVNY 302 (501)
T ss_dssp CEEEEEEEHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEECTTSCCCCSSSCEE-EEEEEETTEEEE
T ss_pred CeEEEECccHHHHHHhC-CCCC--------------CCcEEEEccchhheeeecCCccccCCCCeEE-EeeEecCCccEE
Confidence 99999999999999998 5443 4899999999998766654 454433 2322 22334455 79
Q ss_pred EecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCC
Q 012530 229 LTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 308 (461)
Q Consensus 229 ~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~ 308 (461)
.++++++++|.+++|+++.|... ..|+.+++++++. | ..+|++|+|||.|+|+|+||+
T Consensus 303 ~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~~------~----~~~gl~~~P~~~G~r~P~~d~ 360 (501)
T 3g25_A 303 ALEGSIFVSGSAIQWLRDGLRMI------------NSAPQSESYATRV------D----STEGVYVVPAFVGLGTPYWDS 360 (501)
T ss_dssp EEEEEESCSTHHHHHHHHTSCCC------------SSGGGHHHHHTTS------S----CCTTCEEECCTTCBCTTTCBT
T ss_pred EEecccccHHHHHHHHHHHcCCC------------CcHHHHHHHHhhC------C----CCCeEEEecccccCCCCCCCC
Confidence 99999999999999999987531 2356666665432 2 358999999999999999999
Q ss_pred CCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 309 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 309 ~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
++||+|+|++..|+++| ++||++|||||++|++++.|++ .|.++++|+++||++||++|+||+||++|+||++++.
T Consensus 361 ~arg~~~Gl~~~~~~~~---l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~~~ 437 (501)
T 3g25_A 361 EARGAIFGLTRGTEKEH---FIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIVNTSVERPEI 437 (501)
T ss_dssp TCCEEEEEECTTCCHHH---HHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESC
T ss_pred CCCEEEEccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecchhcCHHHHHHHHHHhCCceEecCC
Confidence 99999999999999999 5679999999999999999987 6889999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012530 388 NESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ 452 (461)
Q Consensus 388 ~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~ 452 (461)
.|++|+|||++|++++|.|+|++++ +++++..++|+| ++++. .|+++|++|+++|++.+.|
T Consensus 438 ~e~~alGaA~la~~a~G~~~~~~~~-~~~~~~~~~~~P--~~~~~-~~~~~y~~~~~~~~~~~~~ 498 (501)
T 3g25_A 438 QETTALGAAFLAGLAVGFWESKDDI-AKNWKLEEKFDP--KMDEG-EREKLYRGWKKAVEATQVF 498 (501)
T ss_dssp CCHHHHHHHHHHHHHTTSSSCTHHH-HHHCCEEEEECC--CCCHH-HHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHhCccCCHHHH-HHhccCCeEECC--CCCHH-HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999986 567778899999 87765 5999999999999998765
No 10
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=100.00 E-value=6.4e-72 Score=590.20 Aligned_cols=382 Identities=14% Similarity=0.089 Sum_probs=334.6
Q ss_pred CCchhHHHHHHHHccC---chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCccccccc
Q 012530 1 MDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVC 77 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~ 77 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+.+|++++|||.|+|||+...
T Consensus 140 ~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~d~l~~~LTG~~~~------- 212 (538)
T 4bc3_A 140 MDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSP------- 212 (538)
T ss_dssp TCCCCHHHHHHHHHHHTSHHHHHHHHSSCCCTTSHHHHHHHHHHHCHHHHHTEEEEEEHHHHHHHHHHTSCCC-------
T ss_pred ccCcHHHHHHHHHHhhCcHHHHHHHHCCCCccccHHHHHHHHHHcCHHHHHHhheEEcHHHHHHHHHhCCCcc-------
Confidence 6999999999998863 579999999999999999999999999999999999999999999999998751
Q ss_pred cccccccccccccccccccccccCCCCHHHHHHcCCC-ccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEe
Q 012530 78 KWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLG-DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVG 156 (461)
Q Consensus 78 ~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~-~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~ 156 (461)
+|+|+||+|++||+++++||+++|+.+|++ .. +||+ ++.+++++| +|++++|+++||++||||+
T Consensus 213 -------td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~---~LP~----i~~~~~~~G-~l~~~~a~~~Gl~~g~pV~ 277 (538)
T 4bc3_A 213 -------IDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE---KLSP----PVPSCSVVG-AISSYYVQRYGFPPGCKVV 277 (538)
T ss_dssp -------CBHHHHTTSSCEETTTTEECHHHHHHHCTTHHH---HHCC----CBCSSCEEE-ECCHHHHHHHCCCTTCEEE
T ss_pred -------cccchhhcccccccccCCCCHHHHHHhCccHHH---HCCC----ccccccccc-ccCHHHHHHhCCCCCCeEE
Confidence 256889999999999999999999999998 43 4575 578899999 5999999999999999999
Q ss_pred echhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCcccccccccc-CCeeEeccccc
Q 012530 157 TSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMV-PKFWLTEGGQS 235 (461)
Q Consensus 157 ~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 235 (461)
+|+||++|+++|+ +.. +|++.+++|||+++..++++|..++... .+++.. ++.|+.+++++
T Consensus 278 ~g~~D~~aa~~g~-~~~---------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 339 (538)
T 4bc3_A 278 AFTGDNPASLAGM-RLE---------------EGDIAVSLGTSDTLFLWLQEPMPALEGH--IFCNPVDSQHYMALLCFK 339 (538)
T ss_dssp CCEEHHHHHHHHT-TCC---------------TTCEEEEESSSEEEEEEESSCCCCSSSE--EEEETTEEEEEEEEEEES
T ss_pred EecccHHhhhhcc-ccC---------------CCcEEEEeccchheEEecCCCCCCCCcc--eEEeecCCCCEEEeehhh
Confidence 9999999999998 643 3899999999999999988887665532 223333 45699999999
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCceeEE
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 315 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~~~ 315 (461)
++|..++|+++.+.. ..|+.|++++++. | |+++|++|+|||.|||+|+ ++|.|+
T Consensus 340 ~gg~~~~w~~~~~~~-------------~~~~~l~~~a~~~------~---~g~~gl~~lp~~~Ger~P~----~~G~~~ 393 (538)
T 4bc3_A 340 NGSLMREKIRNESVS-------------RSWSDFSKALQST------E---MGNGGNLGFYFDVMEITPE----IIGRHR 393 (538)
T ss_dssp SSHHHHHHHHHHHST-------------TCHHHHHHHHHTS------C---TTGGGCEEEEESSCCSSSC----CCEEEE
T ss_pred ccchHHHHHHHHhcC-------------CCHHHHHHHHhcC------C---CCCCCeEEeecCCCCcCCC----CCceee
Confidence 999999999998742 3588888877653 2 5899999999999999996 566665
Q ss_pred ------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCC
Q 012530 316 ------GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 389 (461)
Q Consensus 316 ------Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e 389 (461)
|++. |+++| ++||++|||||++|++++.|++.+.++++|+++||++||++||||+||++|+||++++..|
T Consensus 394 ~~~~~~g~~~-~~~~~---l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e 469 (538)
T 4bc3_A 394 FNTENHKVAA-FPGDV---EVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTAN 469 (538)
T ss_dssp ECTTSCEESC-CCHHH---HHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEECCCTT
T ss_pred eccccccccC-CCHHH---HHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEecCCCC
Confidence 2332 78888 5789999999999999999987777889999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhccc--cCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 390 SVLLGAAILGAVAAKR--YSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRS 454 (461)
Q Consensus 390 ~~alGaA~lA~~~~G~--~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~ 454 (461)
++|+|||++|++++|. |+|++++.+.+.+..++|+| ++++++.|+++|++|+++|++++...+
T Consensus 470 ~~alGaA~lA~~a~G~~~~~~~~ea~~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~l~~~~~~~~~ 534 (538)
T 4bc3_A 470 SACVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATP--SPGASQVYEALLPQYAKLEQRILSQTR 534 (538)
T ss_dssp HHHHHHHHHHHHHHHTGGGSCHHHHHTTSCCCEEEECC--CTTHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHhCcccCCCHHHHHHhhcCCCeeECC--CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998 89999988777778889999 999999999999999999999876643
No 11
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=1.8e-72 Score=590.85 Aligned_cols=382 Identities=19% Similarity=0.251 Sum_probs=327.1
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcC--CCCCcc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATG--DDTRSL 72 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~~ 72 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+++ |++++|||.|+||| +..+
T Consensus 103 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~l~~~~~dyl~~~LTG~~~~~t-- 180 (510)
T 2p3r_A 103 QCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVT-- 180 (510)
T ss_dssp TCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHHHHTTCEEEECHHHHHHHHHTTTSCCEE--
T ss_pred cCccHHHHHHHHHhcccHHHHHHHhCCCCCcccHHHHHHHHHHcCHHHHHHHhcCCeEecCHHHHHHHHhcCCCeEEe--
Confidence 6999999999999875 679999999999999999999999999999999988 67799999999999 4432
Q ss_pred ccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCC
Q 012530 73 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPG 152 (461)
Q Consensus 73 ~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g 152 (461)
|+|+||+|++||+++++||+++|+.+||++. +||+ ++.+++++|. +++ ..+| ++|
T Consensus 181 -------------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~LP~----i~~~~~~~G~-~~~---~~lG-~~g 235 (510)
T 2p3r_A 181 -------------DYTNASRTMLFNIHTLDWDDKMLEVLDIPRE---MLPE----VRRSSEVYGQ-TNI---DGKG-GTR 235 (510)
T ss_dssp -------------EHHHHHTTSSEETTTTEECHHHHHHHTCCGG---GCCE----EECSEEEEEE-ECT---TCTT-SCC
T ss_pred -------------ehhHhhhhccccCccCCCCHHHHHHhCCCHH---HCCc----eecCCCceee-ech---hhcC-CCC
Confidence 5789999999999999999999999999975 3575 5778999994 875 3567 899
Q ss_pred CcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeec-cCccccCCcccccccccc--CCeeE
Q 012530 153 TPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS-RNKLFIPGVWGPFWSAMV--PKFWL 229 (461)
Q Consensus 153 ~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~ 229 (461)
|||++|++|++|+++|+ +... +|++.+++|||+++...+ ++|..++......+++.. ++.|.
T Consensus 236 ~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (510)
T 2p3r_A 236 IPISGIAGDQQAALFGQ-LCVK--------------EGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYA 300 (510)
T ss_dssp EEEEEEEEHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEECTTCCCCCSSSCEEEEEECTTSCEEEE
T ss_pred CeEEEECchHHHHHHhc-CCCC--------------CCcEEEeecchheeEEecCCccccCCCCeeEEEeeecCCCceEE
Confidence 99999999999999999 5443 389999999999765554 555544332111122222 35899
Q ss_pred ecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCC
Q 012530 230 TEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 309 (461)
Q Consensus 230 ~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~ 309 (461)
++++++++|.+++|+++.|... ..|+.+++++++. ++++|++|+|||.|+|+|+||++
T Consensus 301 ~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~~----------~~~~gl~~~P~~~G~r~P~~d~~ 358 (510)
T 2p3r_A 301 LEGAVFMAGASIQWLRDEMKLI------------NDAYDSEYFATKV----------QNTNGVYVVPAFTGLGAPYWDPY 358 (510)
T ss_dssp EEEEESCSHHHHHHHHHTSCCC------------CSSSCHHHHHTTS----------SSCTTCEEECCTTCCBTTTCCTT
T ss_pred EccchhhHHHHHHHHHHHccCC------------CcHHHHHHHHhhC----------CCCCceEEeCcccCCCCCCCCCC
Confidence 9999999999999999987531 2355566655432 36899999999999999999999
Q ss_pred CceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCC
Q 012530 310 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN 388 (461)
Q Consensus 310 a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~ 388 (461)
+||+|+|++..|+++| ++||++|||||++|++++.|++. |.++++|+++||++||++||||+||++|+||+++...
T Consensus 359 arg~~~Gl~~~~~~~~---l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~ 435 (510)
T 2p3r_A 359 ARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVR 435 (510)
T ss_dssp CCEEEEEECTTCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCC
T ss_pred CCEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEeCchhcCHHHHHHHHHHhCCceEecCCC
Confidence 9999999999999999 56799999999999999999875 8899999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012530 389 ESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQR 453 (461)
Q Consensus 389 e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~ 453 (461)
|++|+|||++|++++|.|+|++++ +++++..++|+| +++ .+.|+++|++|+++|++++.|.
T Consensus 436 e~~alGaA~lA~~a~G~~~~~~~~-~~~~~~~~~~~P--~~~-~~~~~~~y~~~~~~~~~~~~~~ 496 (510)
T 2p3r_A 436 EVTALGAAYLAGLAVGFWQNLDEL-QEKAVIEREFRP--GIE-TTERNYRYAGWKKAVKRAMAWE 496 (510)
T ss_dssp CHHHHHHHHHHHHHHTSSSCGGGG-TTCCCEEEEECC--CSC-HHHHHHHHHHHHHHHHHHSSCS
T ss_pred CcHHHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECC--CCC-HHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999884 566777889999 764 6789999999999999988764
No 12
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=100.00 E-value=2e-71 Score=582.52 Aligned_cols=382 Identities=17% Similarity=0.270 Sum_probs=331.1
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcC--C---CC
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATG--D---DT 69 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~---~~ 69 (461)
+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+|++|+|+.+ |++++|||.|+||| + ..
T Consensus 102 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~ 181 (504)
T 2d4w_A 102 QDTRTQKIVDELGGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTEGGVHV 181 (504)
T ss_dssp TCCTTHHHHHHHHCSSCGGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHHHHHTCEEEECHHHHHHHHHTTTTTTCCCE
T ss_pred cccChHHHHHHHHhhcchHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHHHhcCCeEEecHHHHHHHHhcCCCcCCcee
Confidence 5999999999999754 679999999999999999999999999999999988 99999999999999 5 43
Q ss_pred CccccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCC
Q 012530 70 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGL 149 (461)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL 149 (461)
+ |+|+||+|++||+++++||+++|+.+||++. .||+ ++.+++++| .|+++ +.+|
T Consensus 182 ~---------------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~lP~----i~~~~~~~G-~~~~~--~~~G- 235 (504)
T 2d4w_A 182 T---------------DVTNASRTMLMDLDTLSWREDIAADMGIPLS---MLPD----IRSSSEVYG-HGRPR--GLVP- 235 (504)
T ss_dssp E---------------EHHHHTTTTCEETTTTEECHHHHHHTTCCGG---GSCE----EECSEEEEE-ECCTT--SSST-
T ss_pred e---------------ehhhhhhhcCccCCCCccCHHHHHHhCCCHH---HCCC----ccCCcccee-ccchH--HhCC-
Confidence 2 5789999999999999999999999999975 3575 578899999 49885 3578
Q ss_pred CCCCcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeecc-CccccCCccccccccccCC--
Q 012530 150 VPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-NKLFIPGVWGPFWSAMVPK-- 226 (461)
Q Consensus 150 ~~g~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 226 (461)
+ +||++|++|++|+++|+ +... +|++.+++|||+++...++ +|..++......+++..++
T Consensus 236 -~-~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (504)
T 2d4w_A 236 -G-VPIAGILGDQQAATFGQ-ACFE--------------VGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIGDAP 298 (504)
T ss_dssp -T-CEEEEEEEHHHHHHHHT-TCCS--------------TTEEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCTTSC
T ss_pred -C-CeEEEECCcHHHHHhhC-CCCC--------------CCcEEEEcchhheeeeecCCccccCCCCcEEEEEEEcCCCC
Confidence 6 99999999999999998 4443 3899999999999988875 5665543222223344455
Q ss_pred -eeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCC
Q 012530 227 -FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI 305 (461)
Q Consensus 227 -~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~ 305 (461)
.|.++++++++|.+++||++.++.. ..|+.|++++++. |+++|++|+|||.|+|+|+
T Consensus 299 ~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~~----------~~~~gl~~~P~~~G~r~P~ 356 (504)
T 2d4w_A 299 AVYALEGSIAVTGSLVQWLRDNLGMF------------EDAPDVEWLAGKV----------QDNGGAYFVPAFSGLFAPY 356 (504)
T ss_dssp CEEEEEEEESCSHHHHHHHHHTTCTT------------TTCSCTHHHHTTS----------SSCTTCEEECTTCCCSTTT
T ss_pred ceEEEcchhhhHHHHHHHHHHHhCCC------------CCHHHHHHHHhhC----------CCCCCEEEecCCCCCCCCC
Confidence 8999999999999999999987531 2355566555432 3589999999999999999
Q ss_pred CCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceee
Q 012530 306 ADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL 384 (461)
Q Consensus 306 ~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~ 384 (461)
|||++||+|+|++..|+++| ++||++|||||++|++++.|++ .|.++++|+++||++||++|+||+||++|+||++
T Consensus 357 ~d~~arg~~~Gl~~~~~~~~---l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~ 433 (504)
T 2d4w_A 357 WRPDARGALVGLTRYVNRNH---IARAALEATAFQSREVVDAMNADSGVDLTELRVDGGMVANELLMQFQADQLGVDVVR 433 (504)
T ss_dssp CCCCSCEEEEEECSSCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEE
T ss_pred CCCCCCEEEEeCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCcccCHHHHHHHHHHhCCeEEe
Confidence 99999999999999999999 5679999999999999999986 4888899999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 385 PRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRS 454 (461)
Q Consensus 385 ~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~ 454 (461)
+...|++|+|||++|++++|.|+|++++. .+.+..++|+| ++++ +.|+++|++|+++|++++.|.+
T Consensus 434 ~~~~e~~alGaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P--~~~~-~~y~~~y~~~~~~~~~~~~~~~ 499 (504)
T 2d4w_A 434 PKVAETTALGAAYAAGIAVGFWKGEQDVI-DNWAEDKRWSP--SMES-GERERLYRNWKKAVTKTMEWVD 499 (504)
T ss_dssp ESCSCHHHHHHHHHHHHHHTSSCSHHHHH-HHCCEEEEECC--CSCH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHhhcCccCCHHHHH-hhcCCCeEEcc--CCCH-HHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999974 66667789999 8888 8999999999999999998754
No 13
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=100.00 E-value=2.1e-71 Score=582.53 Aligned_cols=379 Identities=17% Similarity=0.250 Sum_probs=330.5
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcCC-CCCccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATGD-DTRSLC 73 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~-~~~~~~ 73 (461)
+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+++ |++++|||.|+|||+ ..+
T Consensus 106 ~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~--- 182 (503)
T 2w40_A 106 LDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYT--- 182 (503)
T ss_dssp TCCTTHHHHHHHHHHSCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHHHHHHHHTTCEEEEEHHHHHHHHHHTSCCEE---
T ss_pred cccCcHHHHHHHHhccchHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhcCCeEEECHHHHHHHHHcCCCccc---
Confidence 5999999999998764 579999999999999999999999999999999998 999999999999995 543
Q ss_pred cccccccccccccccccccccccccccCCCCHHHHHHcCCC-ccccccccccCccccCCCCcccCccCHHHHHHcCCCC-
Q 012530 74 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLG-DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVP- 151 (461)
Q Consensus 74 ~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~-~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~- 151 (461)
|+|+||+|++||+++++||+++|+.+||+ +. +||+ ++.+++++| +|+++ .+| +
T Consensus 183 ------------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~---~lP~----i~~~~~~~G-~~~~~---~~g--~~ 237 (503)
T 2w40_A 183 ------------DVTNASRTLLMDINTLQWDEKMCKIFNITNMS---VLPE----IKSNCSNFG-LVKSE---HVP--DY 237 (503)
T ss_dssp ------------EHHHHTTTTCBCTTTCSBCHHHHHHTTCCCGG---GSCE----EECSEEEEE-ECCCT---TSG--GG
T ss_pred ------------cHHHhhhhcCccCCCCccCHHHHHHcCCChHH---HCCC----ccCCcCcee-eccHH---HcC--CC
Confidence 57889999999999999999999999999 65 3575 577899999 49887 577 7
Q ss_pred -CCcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeecc-CccccCCccccccccccCC---
Q 012530 152 -GTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-NKLFIPGVWGPFWSAMVPK--- 226 (461)
Q Consensus 152 -g~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 226 (461)
|+||++|++|++|+++|+ +... +|++++++|||+++...++ +|..++......+++..++
T Consensus 238 ~g~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 302 (503)
T 2w40_A 238 LNIPITGCIGDQQSACIGQ-AIFD--------------EGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDK 302 (503)
T ss_dssp TTCEEEEEEEHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCSTTSC
T ss_pred CCceEEEECchHHHHHHhC-CCCC--------------CCcEEEEechhheeeeecCCccccCCCCceeEEEeecCCCCC
Confidence 999999999999999998 4442 3899999999999988886 4655443222223344455
Q ss_pred -eeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCC
Q 012530 227 -FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI 305 (461)
Q Consensus 227 -~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~ 305 (461)
.|.++++++++|.+++||++ |+.. ..|+.|++++++. |+++|++|+|||.|+|+|+
T Consensus 303 ~~~~~~g~~~~~g~~~~w~~~-~~~~------------~~~~~l~~~a~~~----------~~~~gl~~~P~~~G~r~P~ 359 (503)
T 2w40_A 303 PKYALEGSIGTAGSGVSWLLK-NKLI------------DDPSEASDIMEKC----------ENTTGVIFVPAFSGLYAPR 359 (503)
T ss_dssp CEEEEEEEESCSHHHHHHHHH-TTSS------------SCGGGHHHHHHHC----------CSCTTCEEECCTTCBCTTT
T ss_pred ceEEEechhhhhHhHHHHHHH-hCCc------------CCHHHHHHHHhhC----------CCCCCEEEecCCCCCCCCC
Confidence 89999999999999999999 7531 2366677666543 3589999999999999999
Q ss_pred CCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCc-cEEEEeccCCCCHHHHHHHHhhhCCcee
Q 012530 306 ADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKI-DTLLACGGLAKNPLFLQQHADIIGCPII 383 (461)
Q Consensus 306 ~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~-~~i~~~GGga~s~~w~Qi~Adv~g~pV~ 383 (461)
||+++||+|+|++..|+++| ++||++|||||++|++++.|++ .|.++ ++|+++||++||++|+||+||++|+||+
T Consensus 360 ~d~~arg~~~Gl~~~~~~~~---l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~ 436 (503)
T 2w40_A 360 WRSDARASIYGMTFNTERSH---IVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIE 436 (503)
T ss_dssp CBTTCCEEEEEECTTCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCEEEESGGGGCHHHHHHHHHHHTSCEE
T ss_pred CCCCCcEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEeCccccCHHHHHHHHHHHCCeEE
Confidence 99999999999999999999 5679999999999999999986 48888 9999999999999999999999999999
Q ss_pred ecCCCCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 012530 384 LPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVS 451 (461)
Q Consensus 384 ~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~ 451 (461)
++...|++|+|||++|++++|.|+|++++.+.+.+..++|+| ++++ +.|+++|++|+++|++.+.
T Consensus 437 ~~~~~e~~alGaA~la~~~~G~~~~~~~~~~~~~~~~~~~~P--~~~~-~~y~~~y~~~~~~~~~~~~ 501 (503)
T 2w40_A 437 VSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHS--KMDD-KKRKKKTSEWNKAVERTLI 501 (503)
T ss_dssp EESCSCHHHHHHHHHHHHHTTCSSCHHHHHHHHTCEEEEECC--CSCH-HHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCcchHHHHHHHHHHHhCccCCHHHHHHhccCCCcEEcc--CCCH-HHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999987776777889999 8888 9999999999999988654
No 14
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=100.00 E-value=7.4e-72 Score=585.13 Aligned_cols=386 Identities=20% Similarity=0.273 Sum_probs=334.6
Q ss_pred CCchhHHHHHHHHccC-chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcCCCCCccccc
Q 012530 1 MDHRAVKQAEKINSRN-SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATGDDTRSLCTT 75 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~-~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~~~~~~~~~ 75 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+++ |++++|||.|+|||+..+
T Consensus 102 ~D~R~~~~~~~l~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~t----- 176 (497)
T 2zf5_O 102 QCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTGEHVT----- 176 (497)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHHHTTCCEEEEHHHHHHHHHHSCCEE-----
T ss_pred cccCcHHHHHHHHhhhHHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHhcCCCEEEcHHHHHHHHHhCCeee-----
Confidence 5999999999998754 579999999999999999999999999999999987 899999999999998643
Q ss_pred cccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcE
Q 012530 76 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 155 (461)
Q Consensus 76 ~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV 155 (461)
|+|+||+|++||+++++||+++|+.+||+.. .||+ ++.+++++| +++++ .+| +|+||
T Consensus 177 ----------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~lP~----i~~~~~~~G-~~~~~---~~g--~g~pV 233 (497)
T 2zf5_O 177 ----------DYSNASRTMLFNIKKLDWDDELLELFDIPES---VLPE----VRESSEVYG-YTKKE---LLG--AEIPV 233 (497)
T ss_dssp ----------EHHHHTTSSSEETTTTEECHHHHHHTTCCGG---GCCE----EECSEEEEE-ECCHH---HHS--SCCEE
T ss_pred ----------eHHHhhhhcCccCCCCCcCHHHHHHcCcCHH---HCCC----cCCCCCeee-ecCHH---HcC--CCCeE
Confidence 5688999999999999999999999999975 3575 578899999 49987 588 89999
Q ss_pred eechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCC--eeEeccc
Q 012530 156 GTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPK--FWLTEGG 233 (461)
Q Consensus 156 ~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 233 (461)
++|++|++|+++|+ +... +|++.+++|||+++...+++|..++......+++..++ .|.++++
T Consensus 234 ~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 298 (497)
T 2zf5_O 234 SGDAGDQQAALFGQ-AAFE--------------AGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAWGLNGRVSYALEGS 298 (497)
T ss_dssp EEEEEHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEEEETCCCCCTTSEEEEEEEETTEEEEEEEEE
T ss_pred EEEccHHHHHHHhC-CCCC--------------CCcEEEEcchhheeeEECCCCccCCCCcEEEEEEEcCCCCEEEEech
Confidence 99999999999998 4442 38999999999999888887765442222222333444 7999999
Q ss_pred ccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCcee
Q 012530 234 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 313 (461)
Q Consensus 234 ~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~ 313 (461)
++++|.+++|+++.+... ..|+.|++++++. |+++|++|+|||.|+|+|+||+++||+
T Consensus 299 ~~~~G~~~~w~~~~~~~~------------~~~~~l~~~a~~~----------~~~~gl~~~P~~~G~r~P~~d~~arg~ 356 (497)
T 2zf5_O 299 IFVTGAAVQWLRDGIKII------------KHASETEELATKL----------ESNEGVYFVPAFVGLGAPYWDQFARGI 356 (497)
T ss_dssp ESCSHHHHHHHHHTSCCC------------SCGGGHHHHHTTS----------SSCTTCEEECCTTCBCTTTCBTTCCEE
T ss_pred hhhHHHHHHHHHHHhCCC------------CcHHHHHHHHhhC----------CCCCceEEecCcCCCCCCCCCCCCCEE
Confidence 999999999999987531 2355666554432 358999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhH
Q 012530 314 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLL 393 (461)
Q Consensus 314 ~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~al 393 (461)
|+|++..|+++| ++||++|||||+++++++.|++.+ ++++|+++||++||++|+||+||++|+||++++..|++|+
T Consensus 357 ~~Gl~~~~~~~~---l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~al 432 (497)
T 2zf5_O 357 IIGITRGTGREH---LARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTAL 432 (497)
T ss_dssp EEEECTTCCHHH---HHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHH
T ss_pred EEeCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcCCCcchHH
Confidence 999999999999 567999999999999999998877 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012530 394 GAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQA 459 (461)
Q Consensus 394 GaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~~~~~ 459 (461)
|||++|++++|.|+|++++ ..+.+..++|+| ++++ +.|+++|++|+++|++++.|.+.++.+
T Consensus 433 GaA~lA~~~~g~~~~~~~~-~~~~~~~~~~~P--~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~ 494 (497)
T 2zf5_O 433 GAAYLAGLAVDYWADTREI-AELWKAERIFEP--KMDE-KTRERLYKGWKEAVKRAMGWAKVVDSA 494 (497)
T ss_dssp HHHHHHHHHTTSSCCHHHH-HTTCCEEEEECC--CCCH-HHHHHHHHHHHHHHHTTTTGGGTCCCC
T ss_pred HHHHHHHHHhCccCCHHHH-HHhcCCCeEECC--CccH-HHHHHHHHHHHHHHHHHHhHhhhhhhh
Confidence 9999999999999999987 466667789999 8887 899999999999999999887665543
No 15
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-70 Score=574.40 Aligned_cols=378 Identities=22% Similarity=0.310 Sum_probs=327.7
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcC--CCCCcc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATG--DDTRSL 72 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~~ 72 (461)
+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+++ |++++|||.|+||| +..+
T Consensus 102 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~-- 179 (495)
T 2dpn_A 102 QDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGGKVHAT-- 179 (495)
T ss_dssp TCCTTHHHHHHHHHTTCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHHHHHTCEEEECHHHHHHHHHTTTSCCEE--
T ss_pred cccChHHHHHHHHhccchhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHhcCCcEEECHHHHHHHHhcCCCeEEE--
Confidence 5999999999998764 579999999999999999999999999999999988 99999999999999 5543
Q ss_pred ccccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCC
Q 012530 73 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPG 152 (461)
Q Consensus 73 ~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g 152 (461)
|+|+||+|++||+++++||+++|+.+||++. +||+ ++.+++++| +|+++ .+| +|
T Consensus 180 -------------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~lP~----i~~~~~~~G-~~~~~---~~G--~g 233 (495)
T 2dpn_A 180 -------------DPTNASRTLLFNLHTLAWDPELLEALGIPAA---LLPE----VRPSDGDFG-ETLPE---LLG--AP 233 (495)
T ss_dssp -------------CHHHHTTSSSEETTTTEECHHHHHHTTCCST---TCCE----ECCTTSCCC-BCCHH---HHS--SC
T ss_pred -------------ehHHhHhhcCccCccCCcCHHHHHHcCCCHH---HCCC----ccCCCCeeE-eccHH---HcC--CC
Confidence 5688999999999999999999999999975 3575 567899999 49987 588 89
Q ss_pred CcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeecc-CccccCCccccccccccCC--eeE
Q 012530 153 TPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-NKLFIPGVWGPFWSAMVPK--FWL 229 (461)
Q Consensus 153 ~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~ 229 (461)
+||++|++|++|+++|+ +... +|++.+++|||+++...++ +|..++......+++..++ .|.
T Consensus 234 ~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (495)
T 2dpn_A 234 VPIRGVLGDQQAALFGQ-AALG--------------GGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYA 298 (495)
T ss_dssp CBEEEEEEHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEE
T ss_pred CeEEEECcHHHHHHHhC-CCCC--------------CCcEEEEccHhhhhhhhcCCccccCCCCceEEEEEEcCCCCEEE
Confidence 99999999999999998 4443 3899999999999988875 4655443222222333444 799
Q ss_pred ecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCC
Q 012530 230 TEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 309 (461)
Q Consensus 230 ~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~ 309 (461)
++++++++|.+++|+++ ++.. ..|+.|++++++. |+++|++|+|||.|+|+|+||++
T Consensus 299 ~~g~~~~~g~~~~w~~~-~~~~------------~~~~~l~~~a~~~----------~~~~gl~~~P~~~G~r~P~~d~~ 355 (495)
T 2dpn_A 299 LEGSLFVAGAAVGWLKE-VGLI------------RESAEVEALAASV----------EDTGDVYFVPAFTGLGAPYWDPY 355 (495)
T ss_dssp EEEEESCSHHHHHHHHH-TTSS------------SSTTTHHHHHHTC----------SCCSSCEEECCTTCBCTTTCBTT
T ss_pred EechHHhHHHHHHHHHH-cCCc------------cCHHHHHHHHhhC----------CCCCcEEEecCCCCCCCCCCCCC
Confidence 99999999999999999 7531 2356666665532 35889999999999999999999
Q ss_pred CceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCC
Q 012530 310 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN 388 (461)
Q Consensus 310 a~g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~ 388 (461)
+||+|+|++..|+++| ++||++|||||+++++++.|++ .|.++++|+++||++||++|+||+||++|+||+++...
T Consensus 356 arg~~~Gl~~~~~~~~---~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~~~~ 432 (495)
T 2dpn_A 356 ARGTLLGLTRGTSRAH---LARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVT 432 (495)
T ss_dssp CCEEEEEECTTCCHHH---HHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCS
T ss_pred CceEEEecCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHhCCeeEecCCc
Confidence 9999999999999999 5679999999999999999987 47888999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012530 389 ESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ 452 (461)
Q Consensus 389 e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~ 452 (461)
|++|+|||++|++++|.+ |++++ ..+.+..++|+| ++++ +.|+++|++|+++|++++.|
T Consensus 433 e~~alGaA~la~~a~G~~-~~~~~-~~~~~~~~~~~P--~~~~-~~y~~~~~~~~~~~~~~~~~ 491 (495)
T 2dpn_A 433 ETTALGAALMAGVGAGAL-SPEDV-AGRFREAERFLP--TMPE-GRREALYRRWREAVERAKGW 491 (495)
T ss_dssp CHHHHHHHHHHHHHHTSC-CHHHH-HHHCCEEEEECC--CSCH-HHHHHHHHHHHHHHHHHSSC
T ss_pred ccHHHHHHHHHHhhcCcC-CHHHH-HHhcCCCeEEcc--CCCH-HHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999 99987 456667789999 8887 89999999999999988765
No 16
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=2.4e-69 Score=566.68 Aligned_cols=380 Identities=18% Similarity=0.163 Sum_probs=319.6
Q ss_pred CCchhHHHHHHHHccC------------------chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhh
Q 012530 1 MDHRAVKQAEKINSRN------------------SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 62 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~------------------~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~ 62 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+||++|+||+|+|+.++++++|||.|
T Consensus 94 ~D~R~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~ 173 (515)
T 3i8b_A 94 NDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKIAAICLPHDWLSW 173 (515)
T ss_dssp TCCTTHHHHHHHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCSEEECHHHHHHH
T ss_pred cCCCHHHHHHHHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHHHHHHHHHHcChHHHHHHheecCHHHHHHH
Confidence 6999999999998763 4689999999999999999999999999999999999999999999
Q ss_pred hhcCCCC-CccccccccccccccccccccccccccccccCCCCHHHHHHc-CCC-----------ccccccccccCcccc
Q 012530 63 RATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEI-GLG-----------DLIDGHHAKIGRSVA 129 (461)
Q Consensus 63 ~LTG~~~-~~~~~~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~-gi~-----------~~~~~~lp~l~~~~~ 129 (461)
+|||+.. .+..+. ......+|+|+||+|++||+++++||+++|+.+ ||+ .. +||+ ++
T Consensus 174 ~LTG~~~~~~~~~~---~~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~~gi~~~~~~~~~~~~~~---~LP~----i~ 243 (515)
T 3i8b_A 174 RIAGYGPVAEGEDA---HLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLEAAEGAKAAQSHAEAI---VLPT----VL 243 (515)
T ss_dssp HHTTCCCCCTTSCC---CGGGCEEEHHHHTTSSSEETTTTEECHHHHHHHHHHHHCHHHHHHHHHHS---BCCE----EE
T ss_pred HhcCCCcccccccc---cccceeecHHHhhcccCeeCCcCccCHHHHHhhcCCCcccccccccchHH---HCCC----Cc
Confidence 9999831 000000 000001367899999999999999999999998 997 33 4565 67
Q ss_pred CCCCcccCccCHHHHHHcCCCCCCcEeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCc
Q 012530 130 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK 209 (461)
Q Consensus 130 ~~g~~ig~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~ 209 (461)
.+++++| .|++++|+++||++|+||++|++|++|+++|+ + .. +|++++++|||+++..++++|
T Consensus 244 ~~~~~~G-~v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~-g-~~--------------~g~~~~s~GTs~~~~~~~~~~ 306 (515)
T 3i8b_A 244 GPRDAAP-VKADPAIAGKNVEGGCLLAPGGGDNAMASLGL-G-MA--------------VGDVSISLGTSGVAAAISENP 306 (515)
T ss_dssp CTTCCCS-SCCCTTTTTTTSTTCCEECCCEEHHHHHHHHT-T-CC--------------TTEEEEEESSSEEEEECBSSC
T ss_pred CCcCccc-CcCHHHHHHhCCCCCCeEEEECchHHHHHhhC-C-CC--------------CCcEEEEechhhhhhcccCcc
Confidence 8899999 49999999999999999999999999999998 5 43 389999999999999888888
Q ss_pred cccCCccccccccccCCeeEecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCC
Q 012530 210 LFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALT 289 (461)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~ 289 (461)
..++......+++. +|.|+.+++++++|.+++|+++.+.. .|+.|++++++++ |++
T Consensus 307 ~~~~~~~~~~~~~~-~g~~~~~~~~~~gg~~l~w~~~~~~~--------------~~~~l~~~a~~~~---------~g~ 362 (515)
T 3i8b_A 307 TYDLTGAVSGFADC-TGHYLPLACTINGSRILDAGRAALGV--------------DYDELAKLAFASK---------PGA 362 (515)
T ss_dssp CCCTTSCSEEEECS-SSSEEEEEEESCSTHHHHHHHHHHTC--------------CHHHHHHHHHHSC---------TTG
T ss_pred ccCCCCcEEeeecC-CCCEEEeeecccHHHHHHHHHHHhCC--------------CHHHHHHHHHhCC---------CCC
Confidence 76654322222233 78899999999999999999987632 3788888776542 578
Q ss_pred CCeEEccCCCCCCCCCCCCCCceeEEcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCH
Q 012530 290 EDIHVLPDFHGNRSPIADPKSKGIICGMTLDS-SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP 368 (461)
Q Consensus 290 ~gl~f~P~l~Ger~P~~d~~a~g~~~Gl~~~~-~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~ 368 (461)
+|++|+|||.|+|+|+| +++||+|+|++..| ++.| ++||++|||||++|++++.|++.|.++++|+++||++||+
T Consensus 363 ~gl~~lP~~~Ger~P~~-~~arg~~~Gl~~~~~~~~~---l~RAvlEgia~~~r~~l~~l~~~g~~~~~i~~~GGgaks~ 438 (515)
T 3i8b_A 363 NGITLVPYFDGERTPNR-PNATATFSGMTLANTTREN---LARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSE 438 (515)
T ss_dssp GGCEEECCTTCBTTTTB-TTCCCEEESCCTTTCSHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESGGGGCH
T ss_pred CCeEEecCCCCCcCCCC-cCcceEEecCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEECchhcCH
Confidence 99999999999999976 99999999999999 9999 5779999999999999999999899999999999999999
Q ss_pred HHHHHHHhhhCCceeecCCCCchhHHHHHHHHHhccccCCHHHHHHHhh-cCCeEEcCCCChhhHHHHHHHH
Q 012530 369 LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSKDPKVKKYHDAKY 439 (461)
Q Consensus 369 ~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~~y~~~y 439 (461)
+|+||+||++|+||++++..|++|+|||++|++++|.++++.+ +. ....+|+|.++++.++.|++.|
T Consensus 439 ~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
T 3i8b_A 439 AIRTLAPSILGMDVTRPATDEYVAIGAARQAAWVLSGETEPPA----WQLTIDGVETGEPTEAVYEAYAKAR 506 (515)
T ss_dssp HHHHHHHHHHTSCEEEECCCCHHHHHHHHHHHHHHHCCSSCCC----CCCCEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCceEecCCcccHHHHHHHHHHHHcCCCCChhH----hhhhccccCCCCccHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887643 32 3356788855656665555554
No 17
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=3.6e-69 Score=568.01 Aligned_cols=381 Identities=19% Similarity=0.273 Sum_probs=318.3
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccce----eeechhhhhhhhcCCCCCcccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATGDDTRSLCT 74 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~~~~~~~~ 74 (461)
+|+|+.++++++++.. +.++++||++++++++++||+|+++|+|++|+++.+ +..+++||.|+|||....
T Consensus 104 ~D~R~~~~~~~l~~~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~i~~~L~~~Lt~g~~~---- 179 (526)
T 3ezw_A 104 QCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVH---- 179 (526)
T ss_dssp TCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHHHHTTCEEEECHHHHHHHHHTTTSCC----
T ss_pred CCcchHHHHHHHHhhccHHHHHHHhCCCCCcccHHHHHHHHHHcCchHHHHHHHhhhhccchhHHHhhhhcCCCce----
Confidence 6999999999999876 568999999999999999999999999999999987 455677888888864321
Q ss_pred ccccccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCc
Q 012530 75 TVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTP 154 (461)
Q Consensus 75 ~~~~~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~p 154 (461)
.+|+|+||+|++||+++++||+++++.+||+.. .||+ ++.+++++| .++++++. ..|+|
T Consensus 180 ---------~td~s~As~t~l~d~~~~~w~~~ll~~~gi~~~---~LP~----i~~~~~~~G-~~~~~~~~----~~gip 238 (526)
T 3ezw_A 180 ---------VTDYTNASRTMLFNIHTLDWDDKMLEVLDIPRE---MLPE----VRRSSEVYG-QTNIDGKG----GTRIP 238 (526)
T ss_dssp ---------EEEHHHHTTSSSEETTTTEECHHHHHHHTCCGG---GCCE----EECSEEEEE-EECTTCTT----SCCEE
T ss_pred ---------EEEchhhccccCcCccccCcCHHHHHHcCCCHH---HCCC----ccccccccC-ccchhhhc----CCCCc
Confidence 136789999999999999999999999999986 3575 577899999 48887654 45789
Q ss_pred EeechhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCcc--cccc-ccccCCeeEec
Q 012530 155 VGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVW--GPFW-SAMVPKFWLTE 231 (461)
Q Consensus 155 V~~g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 231 (461)
|++|++|++|+++|+ +... +|++.+++|||+++.+.++++...+... ..+. ....++.|.++
T Consensus 239 V~~g~gD~~aa~~G~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~e 303 (526)
T 3ezw_A 239 ISGIAGDQQAALFGQ-LCVK--------------EGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALE 303 (526)
T ss_dssp EEEEEEHHHHHHHHT-TCCS--------------TTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEcchHHHHhhhc-cccc--------------cceeEEEeccCeeEecccCCccccccccceeeeeeccCCcceeeeH
Confidence 999999999999998 4443 4899999999999888887765544321 1111 12234579999
Q ss_pred ccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCc
Q 012530 232 GGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSK 311 (461)
Q Consensus 232 ~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~ 311 (461)
|+++++|.+++||++.|.... ..++ . +.+.. .+ ++++|++|+|||+|+|+|+|||++|
T Consensus 304 g~~~~~G~~~~Wl~~~~~~~~-----------~~~~-~-~~~~~------~~---~~~~gl~~lP~~~G~r~P~~d~~ar 361 (526)
T 3ezw_A 304 GAVFMAGASIQWLRDEMKLIN-----------DAYD-S-EYFAT------KV---QNTNGVYVVPAFTGLGAPYWDPYAR 361 (526)
T ss_dssp EEESCSHHHHHHHHHTSCCCC-----------SSSC-H-HHHHT------TS---SSCTTCEEECCTTCBCTTTCBTTCC
T ss_pred HHHHHHHHHHHHHHHHhcccc-----------chhH-H-HHHHh------cc---CCCCCeEEeCCCCCCCCCCCCcccC
Confidence 999999999999999886421 0010 1 11111 11 5799999999999999999999999
Q ss_pred eeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCc
Q 012530 312 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 390 (461)
Q Consensus 312 g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~ 390 (461)
|+|+||+..|++.| ++||++|||||++|++++.|++ .|.++++|+++||++||++||||+|||+|+||++++..|+
T Consensus 362 G~~~Glt~~~~~~~---i~RAvlEgia~~~r~~le~l~~~~g~~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~~~E~ 438 (526)
T 3ezw_A 362 GAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREV 438 (526)
T ss_dssp EEEEEECTTCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCH
T ss_pred eEEecCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECchhhCHHHHHHHHHHHCCEEEeCCCCch
Confidence 99999999999999 5679999999999999999986 5899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 012530 391 VLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQV 450 (461)
Q Consensus 391 ~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~ 450 (461)
+|+|||++|++++|.|+|++|+. ++....++|+| ++++++ |+++|++|++++++-+
T Consensus 439 ~alGAA~lA~~a~G~~~~~~e~~-~~~~~~~~~~P--~~~~~~-~~~~y~~w~~av~r~~ 494 (526)
T 3ezw_A 439 TALGAAYLAGLAVGFWQNLDELQ-EKAVIEREFRP--GIETTE-RNYRYAGWKKAVKRAM 494 (526)
T ss_dssp HHHHHHHHHHHHTTSSSCGGGST-TCCCEEEEECC--CSCHHH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCCHHHHH-HhcCCCeEEcC--CCCHHH-HHHHHHHHHHHHHHHh
Confidence 99999999999999999999874 44456789999 888876 5578999999998754
No 18
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=6.6e-60 Score=490.30 Aligned_cols=360 Identities=14% Similarity=0.126 Sum_probs=279.3
Q ss_pred CCchhHHHHHHHHccCchHHhhhCCCCCCC--ChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPE--MQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~--~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++++... .+++||++++++ ++++||+|+++|+||+|+|++ |++++|||.|+|||+..+
T Consensus 97 ~D~R~~~~~~~l~~~~~-~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe~~~~~~-~l~~~dyl~~~LTG~~~t-------- 166 (482)
T 3h6e_A 97 EQSIPEAVMADYRSQRD-PFARTGSPALPDGLNIGSQLWWLDQLHPDVMANAT-LLPWAQYWAWFLTGRAVS-------- 166 (482)
T ss_dssp TSCCCHHHHHHHHTTCC-CHHHHCCCCCSTTSSHHHHHHHHHHHSHHHHHSCE-EEEHHHHHHHHTTSCCCE--------
T ss_pred CCcccHHHHHHHHhhCh-HHHHhCCCCCCCchhHHHHHHHHHHcCchhhhcCE-EEccHHHHHHHHhCCeee--------
Confidence 59999999999987653 389999999998 899999999999999999999 999999999999999754
Q ss_pred ccccccccccc-cccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEee
Q 012530 79 WTYLGHAHMQQ-MNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT 157 (461)
Q Consensus 79 ~~~~~~~~~s~-as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~ 157 (461)
|+|+ ||+|++||+++++|+ ++|+.+||+ . +||+ ++.+++++| +|++++|+++||++|+||++
T Consensus 167 -------d~s~~As~t~l~d~~~~~W~-~ll~~~gi~-~---~LP~----v~~~~~~~G-~l~~~~A~~~GL~~g~pV~~ 229 (482)
T 3h6e_A 167 -------EVTSLGCHSDLWDPQDGDFS-PMAKRLGWA-A---RFAP----IVRAGDTVG-ALLPAIAERTGLSPDVQVLA 229 (482)
T ss_dssp -------EHHHHTTTCSSEETTTTEEC-HHHHHTTCG-G---GBCC----EECTTSEEE-ECCHHHHHHHTCCTTCEEEC
T ss_pred -------ecchhhhccCCccCCcCcHH-HHHHHcCCH-H---hCCC----CcCCCceee-eeCHHHHHHhCCCCCCEEEE
Confidence 4565 789999999999999 599999998 3 4575 578899999 59999999999999999999
Q ss_pred chhhhhhhccC---cccccCccchhhhhhhhhhccCe-EEEEecccceeeeecc---C-ccccCCccccccccccCCeeE
Q 012530 158 SLIDAHAGGVG---VMESVPESVSEAKENEEEAICHR-MVLVCGTSTCHMAVSR---N-KLFIPGVWGPFWSAMVPKFWL 229 (461)
Q Consensus 158 g~~D~~aa~~g---~~~~~~~~~~~~~~~~~~~~~g~-~~~~~GTs~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 229 (461)
|++|++|+++| + +..+ +|+ +.+++|||.+++.+.+ + |..++... +.+......|.
T Consensus 230 g~~D~~aa~lG~~g~-g~~~--------------~g~~~~~s~GT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 292 (482)
T 3h6e_A 230 GLHDSNAALLAARGF-AEIA--------------DNEATVLSTGTWFIAMRLPATPVDTATLPEARD--CLVNVDVHGRP 292 (482)
T ss_dssp CEEHHHHHHHHHTTS-TTTT--------------TSSEEEEECSSSEEEEEECSSCCCGGGCCGGGT--EEEEECTTSCE
T ss_pred eCcHHHHHHhhhhcc-CCcC--------------CCCEEEEECCceeEEEEecCccCCccccchhhc--eeecccccccc
Confidence 99999999999 7 4432 254 6889999988665555 3 32322111 11111122356
Q ss_pred ecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCC
Q 012530 230 TEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 309 (461)
Q Consensus 230 ~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~ 309 (461)
+++..+++|.+++|+++......++ .++..+.+++..+ ++++|++|+|||+|+|+|+||+
T Consensus 293 ~~g~~~~~G~~~~w~~~~~~~~~~~----------~~~~~~~~a~~~~---------~g~~Gl~flP~l~Ger~P~~d~- 352 (482)
T 3h6e_A 293 VPSARFMGGREIETLIEIDTRRVDI----------KPDQPALLAAVPE---------VLRHGRMILPTLMRGFGPYPHG- 352 (482)
T ss_dssp EEEEEECHHHHHHHHHCSGGGCTTC----------GGGHHHHHHTHHH---------HHHTTCEEESCSSTTCSSCTTC-
T ss_pred ccchhhhhHHHHHHHHHhccccccc----------ccchhhHHHhccc---------cCCCCeEEecCCCCCCCCCCCC-
Confidence 7777788999999997543211000 0111111222111 4689999999999999999987
Q ss_pred CceeEEcCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhh-hCCceeecC
Q 012530 310 SKGIICGMTLDSSEKQLALLYLATVQG--IAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADI-IGCPIILPR 386 (461)
Q Consensus 310 a~g~~~Gl~~~~~~~~l~~~~rAvlEg--ia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv-~g~pV~~~~ 386 (461)
||+|+|++. .| ++||++|+ |||++|++++.|++. ++|+++||++||++|+||+||| +|+||++++
T Consensus 353 -rG~~~Gl~~----~~---l~RA~lE~~Gia~~~r~~l~~~~~~----~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~ 420 (482)
T 3h6e_A 353 -RFAWINRPE----DW---FERRAAACLYAALVADTALDLIGST----GRILVEGRFAEADVFVRALASLRPDCAVYTAN 420 (482)
T ss_dssp -CCEEESCCS----SH---HHHHHHHHHHHHHHHHHHHHHTTCC----SEEEEESGGGGCHHHHHHHHHHSTTSEEEEES
T ss_pred -ceEEeCCCH----HH---HHHHHHHHHhHHHHHHHHHHHhcCC----CeEEEeCCcccCHHHHHHHhhhcCCCeEEEcC
Confidence 999999998 46 67899995 999999999999753 7899999999999999999999 999999999
Q ss_pred CCCchhHHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHH
Q 012530 387 ENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 448 (461)
Q Consensus 387 ~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~ 448 (461)
..|++++|||++|+++.-- .....+.|..+...+..++++++.|++..+.
T Consensus 421 ~~e~~alGAA~lA~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 470 (482)
T 3h6e_A 421 AHNDVSFGALRLIDPGLRP------------QGELVRIEPLDTGSWADLDTYRNRWQAEVEA 470 (482)
T ss_dssp SCCCTTGGGHHHHCTTCCC------------SSCEEECCCCCC----CHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHhCccccc------------ccccCcccccccccchHHHHHHHHHHHHhhc
Confidence 9999999999999988321 1245567633311223456667777776543
No 19
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=100.00 E-value=2.1e-60 Score=497.83 Aligned_cols=367 Identities=16% Similarity=0.162 Sum_probs=291.6
Q ss_pred CCchhHHHHHHHHccC--chHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccc
Q 012530 1 MDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCK 78 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~ 78 (461)
+|+|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+|+.++++++|||.|+|||+.++
T Consensus 103 ~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~-------- 174 (489)
T 2uyt_A 103 RDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNW-------- 174 (489)
T ss_dssp TCGGGTTHHHHHHHHHCHHHHHHHHCCCCCTTSHHHHHHHHHHHCGGGGGGCCEEEEHHHHHHHHHHSCCCC--------
T ss_pred cCCccHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHhcCchHHHHhhhccCcHHHHHHHHhCCccc--------
Confidence 5999999999998764 579999999999999999999999999999999999999999999999999754
Q ss_pred ccccccccccccccccccccccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCcEee-
Q 012530 79 WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT- 157 (461)
Q Consensus 79 ~~~~~~~~~s~as~t~l~d~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~pV~~- 157 (461)
|+|+||+|++||+++++||+++|+.+||++. .||+ ++.+++++|. ++.+ .| +|+||++
T Consensus 175 -------d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~---~lP~----i~~~~~~~G~-~~~~----~~--~g~pV~~~ 233 (489)
T 2uyt_A 175 -------EYTNATTTQLVNINSDDWDESLLAWSGANKA---WFGR----PTHPGNVIGH-WICP----QG--NEIPVVAV 233 (489)
T ss_dssp -------BHHHHGGGTCEETTTTEECHHHHHHHTCCGG---GSCC----CBCTTCEEEE-EECT----TC--CEEEEECC
T ss_pred -------eehhhhhhcccccCcCccCHHHHHHcCCCHH---HCCC----ccCCCcceee-eecc----cC--CCCcEEEE
Confidence 4678999999999999999999999999975 3575 5678999984 6532 23 7899998
Q ss_pred chhhhhhhccCcccccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccC-Ccccc-ccccccCCeeEeccccc
Q 012530 158 SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP-GVWGP-FWSAMVPKFWLTEGGQS 235 (461)
Q Consensus 158 g~~D~~aa~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 235 (461)
|+||++|+++|+ +... ++++++++|||+++...+++|..++ ..... +..+..++.|..++++.
T Consensus 234 g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (489)
T 2uyt_A 234 ASHDTASAVIAS-PLNG--------------SRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIM 298 (489)
T ss_dssp CCBHHHHHHHHS-CCCS--------------TTEEEEEESSSEEEEEEESSCCCSHHHHHHTCEEECCGGGCEEEEEEEC
T ss_pred CchHHHHHHhcC-CCCC--------------CCcEEEEEchHhhcccccCCCccCHHHHhhcceeecCCCCeEEEehhHh
Confidence 889999999998 4432 3799999999999888887775443 22221 22345678899888765
Q ss_pred chhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCC-----C
Q 012530 236 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK-----S 310 (461)
Q Consensus 236 ~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~-----a 310 (461)
| .|+++.+... .+.+.|+.+.+.++ .+ |+++ ++|+| +|.|+++|. .
T Consensus 299 --g---~W~~~~~~~~---------~~~~~~~~l~~~a~-------~~---~~~~-~l~~p----~~~~~~~p~~~~~~~ 349 (489)
T 2uyt_A 299 --G---LWLLQRVLQE---------RQINDLPALIAATQ-------AL---PACR-FIINP----NDDRFINPDEMCSEI 349 (489)
T ss_dssp --T---THHHHHHHHH---------TTCCCHHHHHHHHT-------TS---CSSS-SCCCT----TSGGGSSCSCHHHHH
T ss_pred --H---HHHHHHhhcc---------cchhhHHHHHHHhc-------cC---CCcC-eeECC----CCCccCChhhhHHHH
Confidence 2 5998876321 01234665554321 12 4565 44788 577888887 5
Q ss_pred ceeEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 311 KGIICGM--TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 311 ~g~~~Gl--~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
+|.|.|+ +..|+++| ++||++|||||++|++++.|++ .|.++++|+++||++||++|+||+||++|+||+++.
T Consensus 350 ~g~~~g~~~~~~~t~~~---l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~- 425 (489)
T 2uyt_A 350 QAACREMAQPIPESDAE---LARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP- 425 (489)
T ss_dssp HHHHHHTTCCCCCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC-
T ss_pred HHHHHhcCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC-
Confidence 8999888 47889999 5679999999999999999987 578899999999999999999999999999999876
Q ss_pred CCchhHHHHHHHHHhccccC---CHHHHHHHhhcCCeEEcCCCChhhH-HHHHHHHHHHHHHHH
Q 012530 388 NESVLLGAAILGAVAAKRYS---SLIEAMKAMNAAGQVIHPSKDPKVK-KYHDAKYLIFRELFE 447 (461)
Q Consensus 388 ~e~~alGaA~lA~~~~G~~~---~~~~a~~~~~~~~~~~~P~~~~~~~-~~y~~~y~~y~~l~~ 447 (461)
.|++++|||++|+.+++... +++++.+.+.. .++|+| |++++ +.|+++|++|+++.+
T Consensus 426 ~e~~alGaa~~A~~a~~~~~~~~~~~~~~~~~~~-~~~~~P--~~~~~~~~Y~~~~~~y~~~~~ 486 (489)
T 2uyt_A 426 VEASTLGNIGIQLMTLDELNNVDDFRQVVSTTAN-LTTFTP--NPDSEIAHYVALIHSTRQTKE 486 (489)
T ss_dssp TTHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHSC-CEEECC--CTTSHHHHHHHHTTC------
T ss_pred ccHhHHHHHHHHHHHcCccccHHHHHHHHHhhCC-CeEECC--CcchHHHHHHHHHHHhhchhh
Confidence 79999999888877765544 44555555544 589999 99999 999999999998764
No 20
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=99.36 E-value=4.7e-13 Score=128.43 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=98.3
Q ss_pred ecccccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCC
Q 012530 230 TEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 309 (461)
Q Consensus 230 ~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~ 309 (461)
..-|...+|..++|+.+.+.. .++.|++++.+ .. .||..|+|++. .
T Consensus 124 n~~ca~GtG~~le~~a~~lg~--------------~~~el~~la~~-------------~~----~p~~~~~~c~v---f 169 (270)
T 1hux_A 124 NDKCAAGTGRFLDVMANILEV--------------KVSDLAELGAK-------------ST----KRVAISSTCTV---F 169 (270)
T ss_dssp ESSCCTTSHHHHHHHHHHHTC--------------CTTTHHHHHTT-------------CC----SCCCCCCCSHH---H
T ss_pred ccccchhhHHHHHHHHHHhCC--------------CHHHHHHHHhh-------------CC----CCCCcccccch---h
Confidence 334555568899999987642 14445554322 11 46777888763 3
Q ss_pred CceeEEcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCC
Q 012530 310 SKGIICGMT-LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN 388 (461)
Q Consensus 310 a~g~~~Gl~-~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~ 388 (461)
+++.++++. ..|+++|+ +|+++|+|++++.. .++..+. .++|+++||+++|+.|+|+++|++|+||.+++..
T Consensus 170 a~s~v~~l~~~g~~~~di---~~av~e~Va~~i~~---~~~~~~~-~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~ 242 (270)
T 1hux_A 170 AESEVISQLSKGTDKIDI---IAGIHRSVASRVIG---LANRVGI-VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLA 242 (270)
T ss_dssp HHHHHHHHHHTTCCHHHH---HHHHHHHHHHHHHH---HHHTTCC-CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGG
T ss_pred HhHHHHHHhhCCCCHHHH---HHHHHHHHHHHHHH---HHhcCCC-CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCc
Confidence 566777765 67888884 67999999999844 3444333 4789999999999999999999999999999888
Q ss_pred C-chhHHHHHHHHHh
Q 012530 389 E-SVLLGAAILGAVA 402 (461)
Q Consensus 389 e-~~alGaA~lA~~~ 402 (461)
+ .+|+|||++|+..
T Consensus 243 ~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 243 QYNGALGAALYAYKK 257 (270)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHh
Confidence 8 5999999999764
No 21
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.44 E-value=0.00033 Score=66.58 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC-CCchhHHHHHH
Q 012530 320 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAIL 398 (461)
Q Consensus 320 ~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~alGaA~l 398 (461)
...++++ .+++.+.++-.+....... ...++|+++||.++|+.+.+.+++.+|+++.+|.. .+.+|+|||++
T Consensus 179 ~~~~~di---~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~ 251 (276)
T 4ehu_A 179 NAKIEDI---VAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALY 251 (276)
T ss_dssp TCCHHHH---HHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHH
T ss_pred cccHHHH---HHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHH
Confidence 3456774 5688888876654433222 24578999999999999999999999999999874 56789999999
Q ss_pred HHHh
Q 012530 399 GAVA 402 (461)
Q Consensus 399 A~~~ 402 (461)
|..-
T Consensus 252 A~~~ 255 (276)
T 4ehu_A 252 AFDE 255 (276)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8644
No 22
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=97.33 E-value=0.00032 Score=74.46 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeec-CCCCchhHHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 400 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~ 400 (461)
++.++..+++.+++.+.-.++..++...-....++.|+++||++++|.+.+++.+.||+++... +..++.|+|||+.|+
T Consensus 301 tr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~ 380 (605)
T 4b9q_A 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG 380 (605)
T ss_dssp EHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHH
Confidence 4777777778888888877777766543222357899999999999999999999999998764 467889999999999
Q ss_pred HhccccC
Q 012530 401 VAAKRYS 407 (461)
Q Consensus 401 ~~~G~~~ 407 (461)
.-.|..+
T Consensus 381 ~l~~~~~ 387 (605)
T 4b9q_A 381 VLTGDVK 387 (605)
T ss_dssp HHHTSSC
T ss_pred HhcCCCC
Confidence 7766543
No 23
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=97.30 E-value=0.0022 Score=62.92 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCCceeEEcCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCccEEEEecc-CCCCHHHHHHHHhhhC
Q 012530 308 PKSKGIICGMT------LDSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGG-LAKNPLFLQQHADIIG 379 (461)
Q Consensus 308 ~~a~g~~~Gl~------~~~~~~~l~~~~rAvlEgia~~~~~~~~~l-~~~g~~~~~i~~~GG-ga~s~~w~Qi~Adv~g 379 (461)
.+..++-||-. ...+++|++ ++++..|+..+..+.-.. +..+. ++|+++|| .++|+..+++++..++
T Consensus 257 ~~~~ASsFGk~~~~~~~~~~~~eDIa---~gll~sVa~~I~~lA~l~A~~~~i--~~IvftGgfla~n~~~~~~L~~~l~ 331 (360)
T 2i7n_A 257 GSAVASSFGNMMSKEKRDSISKEDLA---RATLVTITNNIGSIARMCALNENI--DRVVFVGNFLRINMVSMKLLAYAMD 331 (360)
T ss_dssp TTSEEETTTTTTSHHHHTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHTC--CCEEEESGGGCSSSHHHHHHHHHHH
T ss_pred ccceeehhhhHhhHhhhcCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHcCC--CeEEEeCcccccCHHHHHHHHHHHh
Confidence 44555555543 244688965 599999999987764322 22343 47999999 9999999999999985
Q ss_pred ------CceeecCCCC-chhHHHHHHH
Q 012530 380 ------CPIILPRENE-SVLLGAAILG 399 (461)
Q Consensus 380 ------~pV~~~~~~e-~~alGaA~lA 399 (461)
+++..++..+ .+|+|||+.+
T Consensus 332 ~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 332 FWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp HHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred hhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 7888876655 6899999975
No 24
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=97.28 E-value=0.00054 Score=68.40 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh-CCceeec-CCCCchhHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILP-RENESVLLGAAILG 399 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA 399 (461)
++.++..+++.+++.+.-.++..++........++.|+++||+++.|.+.+++.+.+ +.+|..+ +..++.|+|||+.|
T Consensus 311 ~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a 390 (394)
T 3qfu_A 311 TRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQA 390 (394)
T ss_dssp EHHHHHHHHHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHH
Confidence 466766677788888877777766654322335789999999999999999999999 8998766 56778899999998
Q ss_pred HH
Q 012530 400 AV 401 (461)
Q Consensus 400 ~~ 401 (461)
+.
T Consensus 391 ~~ 392 (394)
T 3qfu_A 391 GV 392 (394)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 25
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=97.23 E-value=0.00062 Score=68.52 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceee---------cCCCCchh
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL---------PRENESVL 392 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~---------~~~~e~~a 392 (461)
++.++..+++.+++.+.-.++..++........++.|+++||++++|.+.+++.+.++.++.+ .+..++.|
T Consensus 312 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava 391 (409)
T 4gni_A 312 NRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQA 391 (409)
T ss_dssp EHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHH
Confidence 467776667777777776666666543222235789999999999999999999999988533 45678899
Q ss_pred HHHHHHHHHh
Q 012530 393 LGAAILGAVA 402 (461)
Q Consensus 393 lGaA~lA~~~ 402 (461)
+|||+.|+.-
T Consensus 392 ~GAa~~~~~~ 401 (409)
T 4gni_A 392 RGAALQASLI 401 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9999998754
No 26
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=97.21 E-value=0.00063 Score=68.29 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh-CCceeec-CCCCchhHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILP-RENESVLLGAAILG 399 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA 399 (461)
++.++..+++.+++.+.-.++..++........++.|+++||++++|.+.+++.+.+ +.+|..+ +..++.|+|||+.|
T Consensus 319 ~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a 398 (404)
T 3i33_A 319 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 398 (404)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHH
Confidence 466666666777777777666666654322235789999999999999999999999 8998766 56778899999999
Q ss_pred HHhcc
Q 012530 400 AVAAK 404 (461)
Q Consensus 400 ~~~~G 404 (461)
+.-.|
T Consensus 399 ~~l~~ 403 (404)
T 3i33_A 399 AILIG 403 (404)
T ss_dssp HHHC-
T ss_pred HHhcC
Confidence 86543
No 27
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=97.21 E-value=0.0032 Score=60.06 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCccEEEEecc-CCCCHHHHHHHHhh---hCCceeecCCCC-chhH
Q 012530 320 DSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGG-LAKNPLFLQQHADI---IGCPIILPRENE-SVLL 393 (461)
Q Consensus 320 ~~~~~~l~~~~rAvlEgia~~~~~~~~~l-~~~g~~~~~i~~~GG-ga~s~~w~Qi~Adv---~g~pV~~~~~~e-~~al 393 (461)
..+++|++ ++++.+|+..+..+.... +..+ +++|+++|| .+.|+..++.+.+. .+.++.+++..+ .+|+
T Consensus 206 g~~~eDIa---asl~~sV~~~I~~la~~~a~~~~--i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAl 280 (287)
T 2ews_A 206 DFTPSNKL---AAVIGVVGEVVTTMAITVAREFK--TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAI 280 (287)
T ss_dssp CCCHHHHH---HHHHHHHHHHHHHHHHHHHHHTT--CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHH
T ss_pred CCCHHHHH---HHHHHHHHHHHHHHHHHHHHhCC--CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHH
Confidence 45789965 599999988876665432 2333 457999999 89999999999998 589999987766 4899
Q ss_pred HHHHHH
Q 012530 394 GAAILG 399 (461)
Q Consensus 394 GaA~lA 399 (461)
|||+.|
T Consensus 281 GAaL~~ 286 (287)
T 2ews_A 281 GALYLE 286 (287)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 999864
No 28
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=97.07 E-value=0.00031 Score=66.46 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecC-CCCchhHHHHHH
Q 012530 323 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 398 (461)
Q Consensus 323 ~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaA~l 398 (461)
+.++..+++.+++.++-.++..++. .+ .++.|+++||+++++.+.+++.+.++.||.++. ..+++|+|||+.
T Consensus 199 ~~~~~~~~~~~~~~i~~~i~~~l~~---~~-~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~Gaal~ 271 (272)
T 3h1q_A 199 HREIMRVVRPVIEKMALIVKEVIKN---YD-QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALF 271 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT---SC-SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cC-CCCEEEEECCccchhhHHHHHHHHhCCCccccCChHHHHHHHHHhc
Confidence 4555556678888877666555442 22 377999999999999999999999999999765 456789999975
No 29
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=96.88 E-value=0.0014 Score=65.20 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeec-CCCCchhHHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 400 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~ 400 (461)
++.++..+++..++.+.-.++..++...-....++.|+++||+++.|.+.+.+.+.++.+|..+ +..++.|+|||+.|+
T Consensus 301 t~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~ 380 (383)
T 1dkg_D 301 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG 380 (383)
T ss_dssp EHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTT
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHH
Confidence 4666655666677766555554444322112357899999999999999999999999998765 456788999999875
No 30
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=96.45 E-value=0.0045 Score=64.18 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeec-CCCCchhHHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 400 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~ 400 (461)
++.++..+++.+++.+.-.++..++...-....++.|+++||+++.|.+.+.+.+.++.++... +..++.|+|||+.|+
T Consensus 270 tr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~ 349 (509)
T 2v7y_A 270 TRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGG 349 (509)
T ss_dssp EHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHH
Confidence 4666655666667666655555555442112357899999999999999999999999887654 557788999999998
Q ss_pred Hhcc
Q 012530 401 VAAK 404 (461)
Q Consensus 401 ~~~G 404 (461)
.-.|
T Consensus 350 ~l~~ 353 (509)
T 2v7y_A 350 VIAG 353 (509)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 6544
No 31
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=96.29 E-value=0.0048 Score=66.19 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeec-CCCCchhHHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 400 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~ 400 (461)
++.++..+++.+++.+.-.++..++...-....++.|+++||+++.|.+.+++.+.||+++... +..++.|+|||+.|+
T Consensus 302 tr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~ 381 (675)
T 3d2f_A 302 SREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICA 381 (675)
T ss_dssp EHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHH
Confidence 4667665666666666655555555442111257899999999999999999999999998654 567889999999998
Q ss_pred Hhccc
Q 012530 401 VAAKR 405 (461)
Q Consensus 401 ~~~G~ 405 (461)
.-.|.
T Consensus 382 ~ls~~ 386 (675)
T 3d2f_A 382 IHSPT 386 (675)
T ss_dssp HTCSS
T ss_pred HhCCC
Confidence 76553
No 32
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=96.06 E-value=0.0092 Score=62.49 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhC-Cceeec-CCCCchhHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILP-RENESVLLGAAILG 399 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g-~pV~~~-~~~e~~alGaA~lA 399 (461)
++.++..+...+++.+.-.++..++...-....++.|+++||+++.|.+.+++.+.++ ++|... +..++.|+|||+.|
T Consensus 298 tr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a 377 (554)
T 1yuw_A 298 TRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 377 (554)
T ss_dssp EHHHHHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHH
Confidence 4555544555566555544444444321111357899999999999999999999995 777654 56788999999999
Q ss_pred HHhcc
Q 012530 400 AVAAK 404 (461)
Q Consensus 400 ~~~~G 404 (461)
+.-.|
T Consensus 378 ~~l~~ 382 (554)
T 1yuw_A 378 AILSG 382 (554)
T ss_dssp HHTTS
T ss_pred HHhcC
Confidence 86555
No 33
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=95.37 E-value=0.0044 Score=65.70 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeec-CCCCchhHHHHHHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 400 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~ 400 (461)
++.++..+++.+++.+.-.++..++...-....++.|+++||+++.|.+.+++.+.||+++... +..++.|+|||+.|+
T Consensus 301 tr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~ 380 (605)
T 2kho_A 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG 380 (605)
T ss_dssp EHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHT
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHH
Confidence 4555443333444444333333333221112357899999999999999999999999887654 567788999999997
Q ss_pred Hhcc
Q 012530 401 VAAK 404 (461)
Q Consensus 401 ~~~G 404 (461)
.-.|
T Consensus 381 ~l~~ 384 (605)
T 2kho_A 381 VLTG 384 (605)
T ss_dssp TTTT
T ss_pred HhcC
Confidence 6544
No 34
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=95.34 E-value=0.0071 Score=59.11 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----C-c-cEEEEeccCCCCHHHHHHHHhhhCCceeec-CCCCchhHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH----K-I-DTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLG 394 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~----~-~-~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~-~~~e~~alG 394 (461)
++.++..+++..++.+.-.+++.++. .+. . + +.|+++||+++.|.+.+.+.+.++.+|.++ +..++.++|
T Consensus 242 ~~~~~~~~~~~~~~~i~~~i~~~l~~---~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~G 318 (344)
T 1jce_A 242 KGGEVREALRSVVVAIVESVRTTLEK---TPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKG 318 (344)
T ss_dssp EHHHHHHHTHHHHHHHHHHHHHHHHT---SCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHh---CCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHH
Confidence 45666555666666666555555443 221 1 2 589999999999999999999999999876 456788999
Q ss_pred HHHHHH
Q 012530 395 AAILGA 400 (461)
Q Consensus 395 aA~lA~ 400 (461)
++++|.
T Consensus 319 aa~~a~ 324 (344)
T 1jce_A 319 AGMVLD 324 (344)
T ss_dssp HHHGGG
T ss_pred HHHHHh
Confidence 998765
No 35
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=94.96 E-value=0.035 Score=55.96 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecC
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNA------HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 386 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~------~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~ 386 (461)
++.++..+.+..+|-+.-.+++.++...- ....++.|+++||+++-+-+.+++++.||+||++..
T Consensus 290 s~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~ 360 (419)
T 4a2a_A 290 TAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC 360 (419)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEe
Confidence 46777778889999999888888887653 134578899999999999999999999999998765
No 36
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=94.88 E-value=0.098 Score=51.26 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh-CCceeecCCC----C-chhHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPREN----E-SVLLGA 395 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~----e-~~alGa 395 (461)
+++|. .+-+.|-.|.++.+.++.+. .++++|+|+|||++|+.+|+.++..+ +.+|...+.. + --|+.-
T Consensus 257 s~~Dv---~ATLt~~TA~sIa~~~~~~~---~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aF 330 (371)
T 3qbx_A 257 PAADI---QATLLELSARSISESLLDAQ---PDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAF 330 (371)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHC---TTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHhcc---CCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHH
Confidence 56774 45788888887777776553 24689999999999999999999988 4777765421 1 125666
Q ss_pred HHHHHHhc-cccCCHHH
Q 012530 396 AILGAVAA-KRYSSLIE 411 (461)
Q Consensus 396 A~lA~~~~-G~~~~~~~ 411 (461)
|+||...+ |.-.++..
T Consensus 331 A~LA~~~l~g~p~~lp~ 347 (371)
T 3qbx_A 331 AWLAHRFLERLPGNCPD 347 (371)
T ss_dssp HHHHHHHHTTCCCSCHH
T ss_pred HHHHHHHHcCCCCCCCc
Confidence 77776554 43344443
No 37
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=94.44 E-value=0.067 Score=52.71 Aligned_cols=64 Identities=11% Similarity=0.006 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCC
Q 012530 324 KQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 387 (461)
Q Consensus 324 ~~l~~~~rAvlEgia~~~~~~~~~l~~-~-g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 387 (461)
.++..+.+..++.+.-.+++.++.+.. . ...++.|+++||+++.+.+.+++++.|++||.+...
T Consensus 274 ~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~P 339 (377)
T 2ych_A 274 GRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNP 339 (377)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecCc
Confidence 334445678899999889888887642 2 346899999999999999999999999999998643
No 38
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=94.08 E-value=0.2 Score=48.69 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecC----CCCchhHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLG 394 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~----~~e~~alG 394 (461)
.+.+++ +++.+.++-.+...+....+. ...++|.++||.+.|..+++.+.+.+ |.+|.+++ .+.+.++|
T Consensus 221 ~~~diA---asfq~~l~~~l~~~~~~a~~~-~g~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG 296 (334)
T 3eno_A 221 AIEDIS---YSIQETAFAMLVEVLERALYV-SGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIA 296 (334)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHH-HTCSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHH-cCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHH
Confidence 466654 477777776666665554332 23578999999999999999999887 88888764 34567889
Q ss_pred HHHHHHHhccccCC
Q 012530 395 AAILGAVAAKRYSS 408 (461)
Q Consensus 395 aA~lA~~~~G~~~~ 408 (461)
.|..-..-.|...+
T Consensus 297 ~a~~~~~~~g~~~~ 310 (334)
T 3eno_A 297 QAALLMYKSGVRMS 310 (334)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCC
Confidence 88777666676544
No 39
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=94.00 E-value=0.17 Score=49.65 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh-CCceeecCCC----C-chhHHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPREN----E-SVLLGA 395 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~----e-~~alGa 395 (461)
+++|. .+-+.|-.|.++.+.++.+. .+++|+|+|||++|+.+|+.++..+ +.+|...+.- + --|+.-
T Consensus 264 ~~~Dv---~ATLt~~TA~sIa~~~~~~~----~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t~~~Gi~~d~~EA~aF 336 (370)
T 3cqy_A 264 NEEDI---QSTLLDLTCHSIAQDILKLA----QEGELFVCGGGAFNAELMQRLAALLPGYRIDTTSALGVDPKWAEGIAF 336 (370)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHC----SSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEGGGGTCCTTTHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHhcC----CCCEEEEECCCcCCHHHHHHHHHhCCCCeeeeHHHhCCChhHHHHHHH
Confidence 46774 45888888888877776652 4569999999999999999999998 5566543211 1 134555
Q ss_pred HHHHHHhc
Q 012530 396 AILGAVAA 403 (461)
Q Consensus 396 A~lA~~~~ 403 (461)
|+||...+
T Consensus 337 A~LA~~~l 344 (370)
T 3cqy_A 337 AWLAMRYQ 344 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 40
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=93.25 E-value=0.33 Score=47.07 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecC---C-CCchhHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR---E-NESVLLG 394 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~---~-~e~~alG 394 (461)
.+.+++ +++.+.++-.+......+.+. ...++|.++||.+.|..+++.+.+.+ |.+|.+++ . +.+.++|
T Consensus 216 ~~~diA---a~fq~~l~~~l~~~~~~~~~~-~~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG 291 (330)
T 2ivn_A 216 RVEDLA---YSFQETAFAALVEVTERAVAH-TEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIA 291 (330)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHH-HCCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHH
Confidence 466754 477777777776666655432 23568999999999999999999887 78888765 3 3456888
Q ss_pred HHHHHHHhccccC
Q 012530 395 AAILGAVAAKRYS 407 (461)
Q Consensus 395 aA~lA~~~~G~~~ 407 (461)
.|.......|...
T Consensus 292 ~a~~~~~~~~~~~ 304 (330)
T 2ivn_A 292 YTGLRMYKAGISF 304 (330)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCCC
Confidence 8876655555443
No 41
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=93.04 E-value=0.4 Score=50.70 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh-CCceeecC----CCCchhHHH
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPR----ENESVLLGA 395 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~----~~e~~alGa 395 (461)
.++.+++ +++.++++-.+......+.+. ..+++|.++||.+.|..+++.+...+ |.+|..+. .+.+.++|-
T Consensus 570 ~~~~dIA---asFh~ala~~L~~~~~ra~~~-~g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~DnGiaLGQ 645 (657)
T 3ttc_A 570 APVNQRA---WAFHDALAQGFAALMREQATM-RGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQ 645 (657)
T ss_dssp CCHHHHH---HHHHHHHHHHHHHHHHHHHHT-TTCCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSGGGHHHHH
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHH-cCCCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCcHHHHHHH
Confidence 4577755 488888888887777665442 24579999999999999999999988 88887643 344668999
Q ss_pred HHHHH
Q 012530 396 AILGA 400 (461)
Q Consensus 396 A~lA~ 400 (461)
|+.|+
T Consensus 646 A~~a~ 650 (657)
T 3ttc_A 646 GVIAA 650 (657)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 42
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=92.99 E-value=0.28 Score=52.84 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecC----CCCchhHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLG 394 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~----~~e~~alG 394 (461)
.+.+++ +++.++++-.+......+.+. ..+++|.++||.+.|..+++.+.+.+ |.+|..+. .+.+.++|
T Consensus 665 ~~~dIA---asFq~ala~~L~~~~~~a~~~-~g~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~DgGialG 740 (761)
T 3vth_A 665 EKSYIS---AKFHNTVVNFTYDLANLIRKE-TGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLG 740 (761)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHH-HCCCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSSGGGHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHH-hCCCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCchHHHHH
Confidence 456644 467777776666665554332 13578999999999999999998886 88888764 34556899
Q ss_pred HHHHHHHh
Q 012530 395 AAILGAVA 402 (461)
Q Consensus 395 aA~lA~~~ 402 (461)
.|+.|+..
T Consensus 741 QA~~a~~~ 748 (761)
T 3vth_A 741 QAVIANKI 748 (761)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988644
No 43
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=92.72 E-value=0.25 Score=53.49 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecC----CCCchhHH
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLG 394 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~----~~e~~alG 394 (461)
++.+++. ++.+.++-.+...+..+.+. ..+++|.++||.+.|.++++.+.+.+ |..|.++. .+.+.|+|
T Consensus 677 ~~~dIAa---sfQ~al~~~L~~~~~~a~~~-tg~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALG 752 (772)
T 4g9i_A 677 SPADIAY---SAHLALARAFAHTAVERARE-FGVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVG 752 (772)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHHHHHHT-TTCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHH
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHHH-hCcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHH
Confidence 4566543 66666665555555544432 24678999999999999999998875 67777653 34556999
Q ss_pred HHHHHHHhcccc
Q 012530 395 AAILGAVAAKRY 406 (461)
Q Consensus 395 aA~lA~~~~G~~ 406 (461)
.|++|+..+.-+
T Consensus 753 QA~iA~~~L~~~ 764 (772)
T 4g9i_A 753 QAFLGGLYLEGY 764 (772)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhcc
Confidence 999998876544
No 44
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=91.32 E-value=0.32 Score=46.71 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCC---ceeecC-CCCchhHHHHHHH
Q 012530 329 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC---PIILPR-ENESVLLGAAILG 399 (461)
Q Consensus 329 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~---pV~~~~-~~e~~alGaA~lA 399 (461)
+++..++-++-.+... +++. ..++.|+++||+|+ ++.+.+.+.++. ++.++. ...+.|+|+++++
T Consensus 251 ~i~~~~~~~~~~i~~~---i~~~-~~~~~vvl~GGga~--ll~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 251 AMNEALRKLEQRVLNT---LNEF-SGYTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HHHHHHHHHHHHHHHH---HTTC-CCCCEEEEESTTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHhh-cCCCeEEEECChHH--HHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 3445555554444333 3332 35689999999987 488899999998 576554 4667899999764
No 45
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=90.53 E-value=0.61 Score=48.48 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCC-ceeecC--CCCchhHHHHHHH
Q 012530 323 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPR--ENESVLLGAAILG 399 (461)
Q Consensus 323 ~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~~--~~e~~alGaA~lA 399 (461)
..+++. ++.+.++-.+......+.+. ..+++|.++||.+.|..+++.+....+. .|.++. .+.+.++|+|+.+
T Consensus 280 ~~dIAa---sfQ~~l~~~L~~~~~~a~~~-tg~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~a 355 (576)
T 3ven_A 280 YRDLAA---TAQAALERAVFGLADSVLAR-TGERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAAV 355 (576)
T ss_dssp GHHHHH---HHHHHHHHHHHHHHHHHHHH-HTCSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHHH
Confidence 567554 56555555555555444331 2357999999999999999988887665 666542 4556789999998
Q ss_pred HHhccc
Q 012530 400 AVAAKR 405 (461)
Q Consensus 400 ~~~~G~ 405 (461)
....|.
T Consensus 356 ~~~~g~ 361 (576)
T 3ven_A 356 AVELGD 361 (576)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 766554
No 46
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=82.93 E-value=3.8 Score=39.40 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-ccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCC-chhHHHHHHHHH
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHK-IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILGAV 401 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~-~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e-~~alGaA~lA~~ 401 (461)
+..++-++-.+...+... +.... .+.|+++||||. ++.+.+.+.++.++.+++.++ +.|+|+..++..
T Consensus 255 ~~~~~e~~~~I~~~i~~~-~~~~~~~~~IvltGGGA~--l~~~~l~~~~~~~v~v~~~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 255 KKVKEKFLKDAIKLIEKR-GFKLDQLDSLIFIGGTTQ--KLKEQISKTYPNNSIITNNSQWTTCEGLYKVAVA 324 (329)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCTTSCSEEEEESTTHH--HHHHHHHHHSTTCEECCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCHHHccEEEEECChHH--HHHHHHHHHcCCCCEecCCChhhHHHHHHHHHhh
Confidence 455555544444444433 22222 579999999997 567899999998998876544 678898776543
No 47
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=82.68 E-value=2.4 Score=39.95 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh-CCceeecCCCCchhHHHHHHHHHh
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPRENESVLLGAAILGAVA 402 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~e~~alGaA~lA~~~ 402 (461)
.+++-.+..+...+..+... ..++.|++.||.++++.+.+.+-..+ ..+|..+...+++++|||.++...
T Consensus 218 ~il~~~~~~La~~i~~l~~~-l~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~GAa~la~~~ 288 (299)
T 2e2o_A 218 DILKQGAELLASQAVYLARK-IGTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDLGKRSPEIGAVILAYKE 288 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEECCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCEEEEECCccCcHHHHHHHHHHCCCCeEeccCCCCChHHHHHHHHHHh
Confidence 44444444444433333221 24678999999887776666555444 457877654466889999988654
No 48
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=77.94 E-value=6.8 Score=40.38 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCccEEEEeccCCCCHHHHHHHHhhh---CCceeecC
Q 012530 322 SEKQLALLYLATVQGIAYGTRHIVEHCN-AHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR 386 (461)
Q Consensus 322 ~~~~l~~~~rAvlEgia~~~~~~~~~l~-~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~ 386 (461)
+..+++ +++.+.++-.+....+... ..| .++|.++||.+.|..+++.+...+ |.+|..++
T Consensus 220 ~~~~ia---~~fq~~~~~~l~~~~~~a~~~~~--~~~~~~~GGVa~N~~l~~~l~~~~~~~~~~~~~p~ 283 (540)
T 3en9_A 220 RLEDIC---YSLQEYAFSMLTEITERALAHTN--KGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPP 283 (540)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHHHT--CSEEEEESGGGGCHHHHHHHHHHHHHTTCEEECCC
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHhC--CCeEEEeCcHHhHHHHHHHHHHHHHhcCCEEEeCC
Confidence 456654 4666666665555544432 333 579999999999999999998876 67888764
No 49
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=77.34 E-value=1.7 Score=42.12 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHH-HHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCcee---ecCCCCchhHHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEH-CNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII---LPRENESVLLGAAILGA 400 (461)
Q Consensus 332 AvlEgia~~~~~~~~~-l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~---~~~~~e~~alGaA~lA~ 400 (461)
.+++-++-.+...++. |++..-.++.|+++||+|+- +.+++.+.++.... ..+..++.|+|+..++.
T Consensus 273 ~~i~~~~~~i~~~i~~~l~~~~~~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 273 PILEDLANRIIENIRLNLRGEVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 4455555555444443 33322245899999999984 77888888874433 33445788999987653
No 50
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=72.02 E-value=12 Score=35.66 Aligned_cols=73 Identities=16% Similarity=0.044 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcc--------EEEEeccCCCC-HHHHHHH----Hhhh-------CCceeecCCCCc
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHKID--------TLLACGGLAKN-PLFLQQH----ADII-------GCPIILPRENES 390 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~~~--------~i~~~GGga~s-~~w~Qi~----Adv~-------g~pV~~~~~~e~ 390 (461)
+.+++-.+..+...+..+... ..++ .|++.||.+++ +.+.+.+ .+.. ..+|++....++
T Consensus 235 ~~il~~~~~~La~~i~~l~~~-~~p~~~~~~~~~~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~a 313 (347)
T 2ch5_A 235 RYIFRKAGEMLGRHIVAVLPE-IDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHS 313 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-SCGGGGCSTTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcccccccCCCceEEEECCcccCcHHHHHHHHHHHHhhccccccccCCceEEEecCCC
Confidence 355555555555555544332 3455 78888888764 4444322 2221 235655554557
Q ss_pred hhHHHHHHHHHhcc
Q 012530 391 VLLGAAILGAVAAK 404 (461)
Q Consensus 391 ~alGaA~lA~~~~G 404 (461)
+++|||.++....+
T Consensus 314 ~~~GAa~la~~~~~ 327 (347)
T 2ch5_A 314 SALGGASLGARHIG 327 (347)
T ss_dssp THHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhcC
Confidence 88999999876543
No 51
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=68.28 E-value=11 Score=35.24 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=31.4
Q ss_pred CccEEEEeccCCCCHHHHHHHHhhhC------CceeecCC-CCchhHHHHHHHHHh
Q 012530 354 KIDTLLACGGLAKNPLFLQQHADIIG------CPIILPRE-NESVLLGAAILGAVA 402 (461)
Q Consensus 354 ~~~~i~~~GGga~s~~w~Qi~Adv~g------~pV~~~~~-~e~~alGaA~lA~~~ 402 (461)
.++.|++.||.++.+.+.+.+-..+. .+|+...- .+++++|||.++...
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~~ 292 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQE 292 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHHH
Confidence 46789999998876555554433332 23444443 557889999887654
No 52
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=68.16 E-value=11 Score=35.66 Aligned_cols=68 Identities=21% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCC-HHHHHHHHhhh----------CCceeecCC-CCchhHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADII----------GCPIILPRE-NESVLLGAAILG 399 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s-~~w~Qi~Adv~----------g~pV~~~~~-~e~~alGaA~lA 399 (461)
.+++-.+..+...+..+... ..++.|++.||.++. +.+.+.+-+.+ ..+|+.... .+++++|||.++
T Consensus 239 ~~~~~~~~~La~~i~~l~~~-ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~ 317 (321)
T 3r8e_A 239 AVWADIGTIIGESLVNIVRV-MDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLI 317 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HCCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 34444444444444433321 346789999998876 55554333221 234555443 457789999987
Q ss_pred H
Q 012530 400 A 400 (461)
Q Consensus 400 ~ 400 (461)
.
T Consensus 318 ~ 318 (321)
T 3r8e_A 318 M 318 (321)
T ss_dssp H
T ss_pred H
Confidence 5
No 53
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=65.80 E-value=24 Score=33.65 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---------CCceeecCCCCchhHHHHHHHHHh
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---------GCPIILPRENESVLLGAAILGAVA 402 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---------g~pV~~~~~~e~~alGaA~lA~~~ 402 (461)
.+++-.+..+...+..+... ..++.|++.||.+ +.+.+.+-..+ ..+|......+++++|||.++...
T Consensus 263 ~il~~~~~~La~~i~~l~~~-l~P~~IvlgG~i~--~~~~~~l~~~l~~~~~~~~~~~~i~~s~~~~~~~~GAa~l~~~~ 339 (343)
T 2yhw_A 263 SILRTAGTALGLGVVNILHT-MNPSLVILSGVLA--SHYIHIVKDVIRQQALSSVQDVDVVVSDLVDPALLGAASMVLDY 339 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCCSEEEEESTTH--HHHHHHHHHHHHHHSCGGGTTCEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCEEEEeCCcH--HHHHHHHHHHHHHhcccccCCcEEEEccCCCchHHHHHHHHHHH
Confidence 45555555555544444321 3567888888876 34444332211 345666555667789999887643
No 54
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=65.44 E-value=16 Score=33.92 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh------------CCceeecC-CCCchhHHHHH
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII------------GCPIILPR-ENESVLLGAAI 397 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~------------g~pV~~~~-~~e~~alGaA~ 397 (461)
+-..+.++..+..++..+ .++.|++.||.+..+.+.+.+-..+ ..+|+... ..++.++|||.
T Consensus 209 ~~~~~~L~~~i~~l~~~l-----~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~ 283 (292)
T 2gup_A 209 ERMNRNLAQGLLNIQYLI-----DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALV 283 (292)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHH
Confidence 344444444444444433 4678999999877776654333221 24555544 35568899998
Q ss_pred HHHH
Q 012530 398 LGAV 401 (461)
Q Consensus 398 lA~~ 401 (461)
++..
T Consensus 284 ~~~~ 287 (292)
T 2gup_A 284 NWLQ 287 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 55
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=63.68 E-value=11 Score=34.90 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=29.4
Q ss_pred CccEEEEeccCCCCHHHHHHHHhhhC-------CceeecCC-CCchhHHHHHHHH
Q 012530 354 KIDTLLACGGLAKNPLFLQQHADIIG-------CPIILPRE-NESVLLGAAILGA 400 (461)
Q Consensus 354 ~~~~i~~~GGga~s~~w~Qi~Adv~g-------~pV~~~~~-~e~~alGaA~lA~ 400 (461)
.++.|++.||.+.++.+.+.+-..+. .+|+.... .+++++|||.++.
T Consensus 233 ~p~~ivlgG~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~ 287 (289)
T 2aa4_A 233 DCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQ 287 (289)
T ss_dssp CCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhcCccCCEEEECCCCCchHHHHHHHHHh
Confidence 46778888888765655554443332 34444443 4567899998863
No 56
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=62.92 E-value=13 Score=35.24 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCC-HHHHHHHHhhh-----------CCceeecC-CCCchhHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADII-----------GCPIILPR-ENESVLLGAAIL 398 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s-~~w~Qi~Adv~-----------g~pV~~~~-~~e~~alGaA~l 398 (461)
.+++-.+..+...+..+... ..++.|++.||.++. +.+.+.+-+.+ ..+|+... ..+++++|||.+
T Consensus 231 ~~~~~~~~~La~~i~~l~~~-l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l 309 (321)
T 3vgl_A 231 DSFRELARWAGAGLADLASL-FDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADL 309 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHH
Confidence 44444444444444433321 346789999998865 55444332221 12455444 356788999998
Q ss_pred HHHhcc
Q 012530 399 GAVAAK 404 (461)
Q Consensus 399 A~~~~G 404 (461)
+..++-
T Consensus 310 ~~~~~~ 315 (321)
T 3vgl_A 310 ARQGLE 315 (321)
T ss_dssp HHTC--
T ss_pred HHhhhh
Confidence 876653
No 57
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=62.49 E-value=16 Score=34.43 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCC-CHHHHHHHHhhh----------CCceeecC-CCCchhHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHADII----------GCPIILPR-ENESVLLGAAILG 399 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~-s~~w~Qi~Adv~----------g~pV~~~~-~~e~~alGaA~lA 399 (461)
.+++-.+..+...+..+... ..++.|++.||.++ .+.+.+.+-..+ ..+|.... ..+++++|||.++
T Consensus 241 ~i~~~~~~~L~~~i~~l~~~-l~p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~ 319 (326)
T 2qm1_A 241 MVVDRVCFYLGLATGNLGNT-LNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLA 319 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCCSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHH
Confidence 44444444444444433221 24678899999875 566654433322 24555543 3456789999886
Q ss_pred HH
Q 012530 400 AV 401 (461)
Q Consensus 400 ~~ 401 (461)
..
T Consensus 320 ~~ 321 (326)
T 2qm1_A 320 LQ 321 (326)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 58
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=61.20 E-value=5.2 Score=39.03 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=35.5
Q ss_pred ccEEEEeccCCCCHHHHHHHHhhhC--------Cceeec-CCCCchhHHHHHHHHH
Q 012530 355 IDTLLACGGLAKNPLFLQQHADIIG--------CPIILP-RENESVLLGAAILGAV 401 (461)
Q Consensus 355 ~~~i~~~GGga~s~~w~Qi~Adv~g--------~pV~~~-~~~e~~alGaA~lA~~ 401 (461)
.++|+++||+++-+-+.+.+.+-++ .+|..+ +...++.+|++++|..
T Consensus 294 ~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~l 349 (375)
T 2fxu_A 294 YANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 349 (375)
T ss_dssp HTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred HhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhCc
Confidence 3579999999999988888887765 344433 3355788999999873
No 59
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=59.91 E-value=14 Score=35.17 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhh---------CCceeecCC-CCchhHHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---------GCPIILPRE-NESVLLGAAILGA 400 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---------g~pV~~~~~-~e~~alGaA~lA~ 400 (461)
-..+.++..+..++..+ .++.|++.||.++.+.+.+.+-+.+ ..+|+.... .+++++|||.++.
T Consensus 252 ~~~~~La~~i~~l~~~l-----~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~l 325 (327)
T 4db3_A 252 RFMELLAICFGNIFTAN-----DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLNI 325 (327)
T ss_dssp HHHHHHHHHHHHHHHHH-----CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh-----CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHHh
Confidence 33444444444443333 4678999999887665555443332 223444332 4567889998753
No 60
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=59.89 E-value=19 Score=36.55 Aligned_cols=83 Identities=20% Similarity=0.293 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCccEEEEeccCC-CCHHHHH----HHHhhh--------CCce
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIVE-----HCNAHGHKIDTLLACGGLA-KNPLFLQ----QHADII--------GCPI 382 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~~-----~l~~~g~~~~~i~~~GGga-~s~~w~Q----i~Adv~--------g~pV 382 (461)
.+..|.. ++|-|.+.|.-...+..- .+.+.+...-.|-+.|+.. +.|.+.+ .+.+++ +.+|
T Consensus 372 ~t~~d~~-~vr~i~~~V~~RAA~L~Aa~iaail~~~~~~~~~VgvdGSv~~~~P~f~~~~~~~l~~ll~~~~~~~~~~~v 450 (485)
T 3o8m_A 372 TTVVERK-LIRKLAELVGTRAARLTVCGVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPI 450 (485)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEESHHHHHSTTHHHHHHHHHHHHHTCCCCSGGGCSE
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecChhccCccHHHHHHHHHHHHhccccccCCCceE
Confidence 4555643 577777777654444322 2233344333455578765 3555554 444444 3678
Q ss_pred eecCCCCchhHHHHHHHHHhcc
Q 012530 383 ILPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 383 ~~~~~~e~~alGaA~lA~~~~G 404 (461)
......+++.+|||++|+++..
T Consensus 451 ~l~~a~DGSg~GAAliAa~a~~ 472 (485)
T 3o8m_A 451 QLVAAEDGSGVGAAIIACLTQK 472 (485)
T ss_dssp EEEECCCTTTHHHHHHHHHHHH
T ss_pred EEEEcCCChHHHHHHHHHHHHH
Confidence 8777889999999999999864
No 61
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=59.54 E-value=25 Score=35.28 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH----H-HHHhCCCCccEEEEeccCCCCHHHHHHHH----hhh--------CCcee
Q 012530 321 SSEKQLALLYLATVQGIAYGTRHIV----E-HCNAHGHKIDTLLACGGLAKNPLFLQQHA----DII--------GCPII 383 (461)
Q Consensus 321 ~~~~~l~~~~rAvlEgia~~~~~~~----~-~l~~~g~~~~~i~~~GGga~s~~w~Qi~A----dv~--------g~pV~ 383 (461)
++..|.. ++|.+.+.|.-...+.+ - .+...+.....|.+.||..+.|.+.+.+. +++ +.+|.
T Consensus 346 ~t~~D~~-~v~~ia~~V~~RaA~l~A~~iaai~~~~~~~~~~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~ 424 (457)
T 2yhx_A 346 XKTXMKX-VVRRXLFLIAAYAFRLVVCXIXAICQKKGYSSGHIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIX 424 (457)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSSEEEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEE
T ss_pred ccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceE
Confidence 3556533 34555554443333222 2 22223433356777777744555555444 566 44777
Q ss_pred ecCCCCchhHHHHHHHHHhcc
Q 012530 384 LPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 384 ~~~~~e~~alGaA~lA~~~~G 404 (461)
....++++.+|||++|+++..
T Consensus 425 ~~~~~dgsg~GAAl~aa~~~~ 445 (457)
T 2yhx_A 425 ITPAIDGXGAASXVIXSIASA 445 (457)
T ss_dssp EEECCCTTTHHHHHHHHHHHH
T ss_pred EEECCCchhhhHHHHHHHHhh
Confidence 777889999999999999753
No 62
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=58.95 E-value=21 Score=34.84 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccCCCCHH-HHHHHHhhhC--Cceeec-CCC--CchhHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPL-FLQQHADIIG--CPIILP-REN--ESVLLGAAILG 399 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~-g~~~~~i~~~GGga~s~~-w~Qi~Adv~g--~pV~~~-~~~--e~~alGaA~lA 399 (461)
.+++-.+..+...+-.+... +..++.|+++||.+++.. +.+.+.+.+. .|+.+. ... ++.++|||.++
T Consensus 272 ~~l~~~~~~la~~i~~l~~~l~~~p~~IvlgGgi~~~~~~l~~~i~~~l~~~~~~~i~~~~~~~~a~~~GAa~l~ 346 (381)
T 1saz_A 272 RVYRAMAYQIAKWIGKMAAVLKGEVDFIVLTGGLAHEKEFLVPWITKRVSFIAPVLVFPGSNEEKALALSALRVL 346 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSEEEEEEGGGGCTTTHHHHHHHHHTTTSCEEEEEBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcCccChHHHHHHHHHHHHhhcCeEEEecCcchhHHHHHHHHHH
Confidence 55666666665555544332 236889999999886533 4444443332 244432 222 36788998775
No 63
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=58.74 E-value=40 Score=31.63 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCH-----HHHHHHHhhhC-------CceeecC-CCCchhHHHHH
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP-----LFLQQHADIIG-------CPIILPR-ENESVLLGAAI 397 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~-----~w~Qi~Adv~g-------~pV~~~~-~~e~~alGaA~ 397 (461)
+.+++-++..+..++..+ .++.|++.||.++.. .+.+.+...+. .+|+... ..+++++|||.
T Consensus 221 ~~~~~~~a~~la~l~~~~-----dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~ 295 (310)
T 3htv_A 221 QSLLENAARAIATSINLF-----DPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAI 295 (310)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CCSEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-----CCCEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHH
Confidence 356666666555555433 467899999888652 33333333321 2333333 35678899999
Q ss_pred HHHH
Q 012530 398 LGAV 401 (461)
Q Consensus 398 lA~~ 401 (461)
++..
T Consensus 296 la~~ 299 (310)
T 3htv_A 296 LAHQ 299 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 64
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=58.19 E-value=15 Score=34.33 Aligned_cols=70 Identities=11% Similarity=-0.135 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCC--HHHHHHHHhhhCCceeecCCCCchhHHHHHHHHHhccc
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN--PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 405 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s--~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~ 405 (461)
+.+++-.+..+...+ .+.- -.+++.|++.||.+++ +.+.+.+... ..++..+ .++...||+.+|....++
T Consensus 213 ~~i~~~~~~~La~~i-~~~~-~~~p~~vvlgGGv~~~~~~~l~~~l~~~-~~~i~~~--~~a~~~GA~~la~~~~~~ 284 (291)
T 1zbs_A 213 YSLVQNSFDDFLVRN-VLRY-NRPDLPLHFIGSVAFHYREVLSSVIKKR-GLTLGSV--LQSPMEGLIQYHHNNHVL 284 (291)
T ss_dssp HHHHHHHHHHHHHHH-TGGG-CCTTSCEEEESHHHHHTHHHHHHHHHHT-TCCEEEE--ESCSHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHH-hccc-CCCCceEEEECchHHhhHHHHHHHHHHc-CCeeccc--CcCHHHHHHHHHHhhhhh
Confidence 467777777776666 3322 1267889999998876 3333333332 2345443 377889999998766554
No 65
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=57.93 E-value=18 Score=34.38 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=30.1
Q ss_pred CccE-EEEeccCCCC--HHH-----HHHHHh------h-hCCceeecCCCCchhHHHHHHHHHh
Q 012530 354 KIDT-LLACGGLAKN--PLF-----LQQHAD------I-IGCPIILPRENESVLLGAAILGAVA 402 (461)
Q Consensus 354 ~~~~-i~~~GGga~s--~~w-----~Qi~Ad------v-~g~pV~~~~~~e~~alGaA~lA~~~ 402 (461)
.++. |++.||.+.. +++ .+.+.+ . -..||......+++++|||.++...
T Consensus 264 ~P~~gvvigGGi~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~l~GAa~l~~~~ 327 (332)
T 1sz2_A 264 GTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQT 327 (332)
T ss_dssp TCTTEEEEECSSSGGGHHHHHHSSHHHHHHCCGGGHHHHTTCCEEEECCSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEChhhhhHHHHhccHHHHHHHHhcCchhhHHhCceEEEEECCchhHHHHHHHHHHh
Confidence 4555 8889998763 322 222221 1 2456766555677899999987644
No 66
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=54.34 E-value=22 Score=36.60 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=52.9
Q ss_pred eeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CccEEEEeccCCCCHHHHHHHHhhhCC-ceeec
Q 012530 312 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH-----KIDTLLACGGLAKNPLFLQQHADIIGC-PIILP 385 (461)
Q Consensus 312 g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~-----~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~ 385 (461)
..+..+...++-++ .+++|--..-..|.. ..++.+..... .+..|+++||+|+-+-..|+..++|+. +|++-
T Consensus 503 ~~L~~I~pR~~vEE-lelVR~~ak~~vfv~-n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiG 580 (610)
T 2d0o_A 503 DELVPLPGDLALEK-VRAIRRSAKERVFVT-NALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAG 580 (610)
T ss_dssp SCEEECCTTCCHHH-HHHHHHHHHHHHHHH-HHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEE
T ss_pred cceeeeCCCcchHH-HHHHHHHHhhhhhhH-HHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEe
Confidence 56667754444566 445555444444432 34555544222 247899999999999999999999999 99865
Q ss_pred CCCCchhHHHHH
Q 012530 386 RENESVLLGAAI 397 (461)
Q Consensus 386 ~~~e~~alGaA~ 397 (461)
....-++.|-..
T Consensus 581 rP~~~gv~gP~f 592 (610)
T 2d0o_A 581 RGNIRGSEGPRN 592 (610)
T ss_dssp ECCGGGTSTTSC
T ss_pred cCCccccCCCcH
Confidence 443333333333
No 67
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=51.22 E-value=19 Score=39.66 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=31.6
Q ss_pred cEEEEeccCCCC-HHHHHHHH----hhh-CCceeecCCCCchhHHHHHHHHHhccc
Q 012530 356 DTLLACGGLAKN-PLFLQQHA----DII-GCPIILPRENESVLLGAAILGAVAAKR 405 (461)
Q Consensus 356 ~~i~~~GGga~s-~~w~Qi~A----dv~-g~pV~~~~~~e~~alGaA~lA~~~~G~ 405 (461)
..|.+.||.++. +.+.+.+- +.+ ..++.+....+++.+|||++|+++...
T Consensus 408 ~~IvigGgV~~~~~~~~~~l~~~l~~~~~~~~~~i~~a~dgs~~GAA~laa~~~~l 463 (917)
T 1cza_N 408 TTVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRL 463 (917)
T ss_dssp EEEEEECHHHHHCSSHHHHHHHHHHHHCTTEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred eEEEECCchhhccHHHHHHHHHHHHHhcCCCceEEEEeccchHHHHHHHHHhHhhh
Confidence 456666666654 44443333 332 234555556889999999999998764
No 68
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=50.89 E-value=38 Score=32.79 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCC-HHHHHHHHhhh--------CCceeecC-CCCchhHHHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADII--------GCPIILPR-ENESVLLGAAILGAV 401 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s-~~w~Qi~Adv~--------g~pV~~~~-~~e~~alGaA~lA~~ 401 (461)
-..+.++..+..++..+ .++.|++.||.++. +.+.+.+-..+ ..+|+... ..+++++|||.++..
T Consensus 297 ~~~~~La~~i~~l~~~l-----dP~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~~~ 371 (380)
T 2hoe_A 297 DIARYFSIGLLNLIHLF-----GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHALE 371 (380)
T ss_dssp HHHHHHHHHHHHHHHHH-----CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-----CCCEEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Confidence 34444444444444433 46788898988764 55544333221 23455543 345688999988754
No 69
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=46.48 E-value=21 Score=36.70 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=49.0
Q ss_pred eeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CccEEEEeccCCCCHHHHHHHHhhhCC-ceeec
Q 012530 312 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH-----KIDTLLACGGLAKNPLFLQQHADIIGC-PIILP 385 (461)
Q Consensus 312 g~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~-----~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~ 385 (461)
..+..+...++-++ .+++|--..-..|.. ..++.+..... .+..|+++||+|+-+-..|+..++|+. +|++-
T Consensus 505 ~~L~~I~~R~~vEE-lelVR~~ak~~vfv~-n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiG 582 (607)
T 1nbw_A 505 GELVPIDNASPLEK-IRLVRRQAKEKVFVT-NCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAG 582 (607)
T ss_dssp TEEEEECCSSCHHH-HHHHHHHHHHHHHHH-HHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEE
T ss_pred cceeeeCCCcchHH-HHHHHHHHhhhhhhH-HHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEe
Confidence 56666754444556 345555444444432 34555543222 247899999999999999999999999 98865
Q ss_pred CC
Q 012530 386 RE 387 (461)
Q Consensus 386 ~~ 387 (461)
..
T Consensus 583 rP 584 (607)
T 1nbw_A 583 QG 584 (607)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 70
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=45.89 E-value=47 Score=32.70 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCC-HHHHHHH-Hhh----h-----CCceeecCC-CCchhHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQH-ADI----I-----GCPIILPRE-NESVLLGAAILG 399 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s-~~w~Qi~-Adv----~-----g~pV~~~~~-~e~~alGaA~lA 399 (461)
.+++-.+..+...+..+... ..++.|++.||.++. +.+.+.+ ..+ + ..+|..... .+ +++|||.++
T Consensus 336 ~il~~~~~~L~~~i~~l~~~-ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~I~~s~l~~~-~~~GAa~l~ 413 (429)
T 1z05_A 336 DVIQQLGRYLGAAIAIVINL-FNPEKILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFYKQ-ATMPGAALI 413 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCSSC-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCEEEEeCccccchHHHHHHHHHHHHHhcccccCCCcEEEEecCCCc-cHHHHHHHH
Confidence 44444444444444333221 246788888888763 4444322 221 1 345665543 45 889999887
Q ss_pred HH
Q 012530 400 AV 401 (461)
Q Consensus 400 ~~ 401 (461)
..
T Consensus 414 ~~ 415 (429)
T 1z05_A 414 KQ 415 (429)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 71
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=45.60 E-value=42 Score=31.34 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCC-CC-HHHHHHHHhhhC--------CceeecCC-CCchhHHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA-KN-PLFLQQHADIIG--------CPIILPRE-NESVLLGAAILGA 400 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga-~s-~~w~Qi~Adv~g--------~pV~~~~~-~e~~alGaA~lA~ 400 (461)
.+++-.+..+...+..+... ..++.|++.||.+ +. +.+.+.+.+.+. .+|+.... .+++++|||.++.
T Consensus 216 ~~~~~~~~~l~~~i~~l~~~-~~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 216 RLVLQAARYVGIGLASLVKA-FDPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCCSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HCCCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 34444444444443333221 2467889988877 54 555554433221 22444433 4567899999876
Q ss_pred Hh
Q 012530 401 VA 402 (461)
Q Consensus 401 ~~ 402 (461)
..
T Consensus 295 ~~ 296 (302)
T 3vov_A 295 LE 296 (302)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 72
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=44.02 E-value=56 Score=31.84 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCC-HHHHHHHHhhh----------CCceeecC-CCCchhHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADII----------GCPIILPR-ENESVLLGAAILG 399 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s-~~w~Qi~Adv~----------g~pV~~~~-~~e~~alGaA~lA 399 (461)
.+++-.+..+...+..+... ..++.|++.||.++. +.+.+.+-+.+ ..+|+... ..+++++|||++.
T Consensus 313 ~~l~~~~~~L~~~i~~l~~~-ldP~~IvlgG~i~~~~~~l~~~i~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~~~ 391 (406)
T 1z6r_A 313 DIITGVGAHVGRILAIMVNL-FNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCCCCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCEEEEeCccchhhHHHHHHHHHHHHHhcccccCCCcEEEEeCCCChHHHHHHHHHH
Confidence 44444444444443333221 246788888888763 55544333221 34566544 3567889997654
No 73
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=43.53 E-value=45 Score=31.19 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=32.6
Q ss_pred cCHHHHHHcCCCCCCcEeechhhhhhhccCcc--cccCccchhhhhhhhhhccCeEEEEecccceeeeeccC
Q 012530 139 LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVM--ESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 208 (461)
Q Consensus 139 v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~~--~~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~ 208 (461)
+.+.+.+++|+ ||.. ..|..|+++|-. |..++ ..+.+++++||.--...+.+.
T Consensus 89 l~~~l~~~~~~----pV~v-~NDanaaalaE~~~G~~~~------------~~~~~~l~~GtGiG~gii~~G 143 (302)
T 3epq_A 89 FLQTVXNEMXI----PVGF-STDVNAAALGEFLFGEAXG------------LDSCLYITIGTGIGAGAIVEG 143 (302)
T ss_dssp HHHHHHHHHCS----CEEE-EEHHHHHHHHHHHHSTTTT------------CSCEEEEEESSSEEEEEEETT
T ss_pred hHHHHHHHhCC----CEEE-echhHHHHHHHHHhCCCCC------------CCcEEEEEECCceEEEEEECC
Confidence 56677777764 5544 678888877631 21111 036899999998655555443
No 74
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=42.85 E-value=5.9 Score=37.11 Aligned_cols=63 Identities=13% Similarity=-0.098 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCC---ceeecCCCCchhHHHHHHHH
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC---PIILPRENESVLLGAAILGA 400 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~---pV~~~~~~e~~alGaA~lA~ 400 (461)
.+++-.+..+...+ .+. .-.+++.|++.||.+++ +.+.+-..+.. +|..+ .+++++|||.+|.
T Consensus 212 ~i~~~~~~~La~~i-~~~-~~~~p~~vvlgGGv~~~--l~~~l~~~l~~~~~~i~~~--~~a~~~GAa~la~ 277 (291)
T 1zxo_A 212 QLVMNSFIAFFRRN-VMQ-YDYKQYPVHFIGSIAYC--YKEILQDAARQTGIQIGKI--LQSPMEGLIQYHS 277 (291)
T ss_dssp HHHHHHHHHHHTTT-GGG-SCTTTSCEEECSHHHHH--THHHHHHHTTTTTCCEEEE--CSCTHHHHHTTSS
T ss_pred HHHHHHHHHHHHHH-hcc-cCCCCceEEEECcHHHH--HHHHHHHHHhcCCcEEeec--CCCHHHHHHHHHH
Confidence 55555555555555 332 11267889999998877 44444444433 44433 4678899998753
No 75
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=42.70 E-value=16 Score=34.28 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCC--CHHHHHHHHhhhCCceeecCCCCchhHHHHHHHH
Q 012530 331 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK--NPLFLQQHADIIGCPIILPRENESVLLGAAILGA 400 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~--s~~w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~ 400 (461)
+.+++-.+..+...+..+... .++.|++.||.++ .+.+.+-+.. .+.. ...++++|||++|.
T Consensus 229 ~~i~~~~~~~L~~~l~~l~~~--~p~~VvlgGgv~~~~~~~l~~~l~~----~i~~--~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 229 DALLRQAGEDAWAIARALDPQ--DELPVALCGGLGQALRDWLPPGFRQ----RLVA--PQGDSAQGALLLLQ 292 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--CCSCEEEESHHHHHTGGGSCHHHHH----HCCC--CSSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCeEEEECCchHhHHHHHHHHHHh----hccC--CCCCHHHHHHHHHh
Confidence 466666666666666655433 6778999898764 2333332222 1222 35678899999864
No 76
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=42.57 E-value=22 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=26.8
Q ss_pred CHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCc
Q 012530 104 DDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTP 154 (461)
Q Consensus 104 ~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~p 154 (461)
-.++|+.+++.+. +||+| ..++.+|+.+|+..|--
T Consensus 22 k~~lL~~y~i~~~---qLP~I-------------~~~DPvar~~G~k~GdV 56 (77)
T 1eik_A 22 AKRVLKELDAHPE---QLPKI-------------KTTDPVAKAIGAKRGDI 56 (77)
T ss_dssp HHHHHHHTTCCTT---TSCCC-------------BTTSHHHHGGGCCTTCE
T ss_pred HHHHHHHcCCCHH---HCCee-------------eCcCHhhHHhCCCCCCE
Confidence 4679999999874 67875 25777888999988753
No 77
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=41.92 E-value=24 Score=33.25 Aligned_cols=46 Identities=26% Similarity=0.293 Sum_probs=27.0
Q ss_pred CccEEEEeccCCCC-HHHHHHHHhh----h----CCceeecC-CCCchhHHHHHHH
Q 012530 354 KIDTLLACGGLAKN-PLFLQQHADI----I----GCPIILPR-ENESVLLGAAILG 399 (461)
Q Consensus 354 ~~~~i~~~GGga~s-~~w~Qi~Adv----~----g~pV~~~~-~~e~~alGaA~lA 399 (461)
.++.|++.||.++. +++.++...+ + ..+|+... ..+++++|||.+|
T Consensus 269 ~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~i~~s~~~~~a~~~GAa~la 324 (327)
T 2ap1_A 269 DPDLLVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFLH 324 (327)
T ss_dssp CCSEEEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSCTTTHHHHHHHHTT
T ss_pred CCCEEEEeChhhcchhHHHHHHHHHHHhhccccCCCEEEEcCCCCcHHHHHHHHHH
Confidence 46678888888764 4444433222 1 23444443 3456788999865
No 78
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=41.73 E-value=40 Score=32.50 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=28.2
Q ss_pred CccEEEEecc-CCCCHHHHH------HHHhh-h-----------CCceeecC-CCCchhHHHHHHHH
Q 012530 354 KIDTLLACGG-LAKNPLFLQ------QHADI-I-----------GCPIILPR-ENESVLLGAAILGA 400 (461)
Q Consensus 354 ~~~~i~~~GG-ga~s~~w~Q------i~Adv-~-----------g~pV~~~~-~~e~~alGaA~lA~ 400 (461)
.++.|++.|| .++++.+.+ .+... + ..||.+.. ..+++++|||.++.
T Consensus 304 ~p~~IvlgGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~l~GAa~l~~ 370 (373)
T 2q2r_A 304 LPLTIVLVGDNIVNNAFFYRNPQNLKEMHHEALNHEMERFGFQSRVSYLRQKKLLNLNLMGCYRCGL 370 (373)
T ss_dssp CCSEEEECSHHHHHTHHHHHSHHHHHHHHHHHTCSGGGGGTSGGGCEEEEECSCCCHHHHHHHHHHH
T ss_pred CCCEEEEeCChHhCchhhhcchhHHHHHHHHHhhcccchhhhhcCCcEEEEecCCchhHHHHHHHHH
Confidence 4566777677 666665554 22222 2 24555543 45678999998874
No 79
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=41.34 E-value=32 Score=34.64 Aligned_cols=86 Identities=20% Similarity=0.294 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhC-CCCc--cEEEEeccCC-CCHHHHHHHHhh-----hCCc
Q 012530 319 LDSSEKQLALLYLATVQGIAYGTRH--------IVEHCNAH-GHKI--DTLLACGGLA-KNPLFLQQHADI-----IGCP 381 (461)
Q Consensus 319 ~~~~~~~l~~~~rAvlEgia~~~~~--------~~~~l~~~-g~~~--~~i~~~GGga-~s~~w~Qi~Adv-----~g~p 381 (461)
...+..+.. ++|-|.+.|.-.-.+ ++..+.+. +... -.|-+.|+.- +.|.+.+.+... -+.+
T Consensus 362 ~~~~~~d~~-~vr~i~~~V~~RaA~L~Aa~iaail~k~~~~~~~~~~~~~VgvDGsv~~~yp~f~~~~~~~l~~l~~~~~ 440 (470)
T 3f9m_A 362 LRPSTTDCD-IVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCE 440 (470)
T ss_dssp CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSEEEEEEEECHHHHHCTTHHHHHHHHHHHHCTTEE
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeccHHHhCchHHHHHHHHHHHHcCCCe
Confidence 344445544 577777776643333 23333321 1111 3466667765 466666655444 3577
Q ss_pred eeecCCCCchhHHHHHHHHHhccc
Q 012530 382 IILPRENESVLLGAAILGAVAAKR 405 (461)
Q Consensus 382 V~~~~~~e~~alGaA~lA~~~~G~ 405 (461)
|......+++.+|||++|+++...
T Consensus 441 v~l~~a~DGSg~GAAliAa~a~~~ 464 (470)
T 3f9m_A 441 ITFIESEEGSGRGAALVSAVACKK 464 (470)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTC-
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHH
Confidence 888778899999999999998653
No 80
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=41.33 E-value=21 Score=34.49 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=31.1
Q ss_pred CccEEEEeccCCCCHH--HHHHHHhhhCCceeecCCCCchhHHHHHHHHHhc
Q 012530 354 KIDTLLACGGLAKNPL--FLQQHADIIGCPIILPRENESVLLGAAILGAVAA 403 (461)
Q Consensus 354 ~~~~i~~~GGga~s~~--w~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~ 403 (461)
.++.|+++||||.-.. +.+.+.+.+ |.. .+...+.|+|...++..-.
T Consensus 290 ~~~~Ivl~GGGa~l~~~~l~~~i~~~~--~~~-~~p~~anA~G~~~~~~~~~ 338 (355)
T 3js6_A 290 SIDRIIVTGGGANIHFDSLSHYYSDVF--EKA-DDSQFSNVRGYEKLGELLK 338 (355)
T ss_dssp SCSEEEEESTTHHHHHHHHHHHSSSCE--ECC-SSGGGHHHHHHHHHHHHHH
T ss_pred hccEEEEECcchhcchhhHHHHHHHHC--CCC-CCcHHHHHHHHHHHHHHHH
Confidence 3588999999987332 335666666 333 4455578899988765543
No 81
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=40.25 E-value=7.1 Score=31.12 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=27.6
Q ss_pred HHHH-HHHHhhchhhhhccceeeechhhhhhhhc
Q 012530 33 PPKL-LWVKENLQESWSMVFRWMDLSDWLSYRAT 65 (461)
Q Consensus 33 ~~kl-~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LT 65 (461)
..|+ .|+++|..++|.|...-..=.|||.|.+|
T Consensus 78 ~akvekwf~rnc~~v~gr~cta~EK~d~l~~l~~ 111 (112)
T 1dw0_A 78 SARVEKWLGRNCNSVIGRDCTPGEKADLLAWLAA 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHcccCCHHHHHHHHHHHHh
Confidence 4565 49999999999998777777899999886
No 82
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=36.72 E-value=47 Score=33.26 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=29.7
Q ss_pred EEEEeccCC-CCHHHHHHHH----hhh--CCceeecCCCCchhHHHHHHHHHhc
Q 012530 357 TLLACGGLA-KNPLFLQQHA----DII--GCPIILPRENESVLLGAAILGAVAA 403 (461)
Q Consensus 357 ~i~~~GGga-~s~~w~Qi~A----dv~--g~pV~~~~~~e~~alGaA~lA~~~~ 403 (461)
.|.+.||.. +.+.+.+.+. +.+ ..+|......+++.+|||++|+++.
T Consensus 395 ~V~i~Ggv~~~~~~~~~~l~~~l~~~~~~~~~i~~~l~~dgs~iGAAllA~~~~ 448 (451)
T 1bdg_A 395 TVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKGAAAIAASCT 448 (451)
T ss_dssp EEEEESHHHHHCTTHHHHHHHHHHHHSCTTCEEEEEECTTHHHHHHHHHHTTC-
T ss_pred EEEEeCchhcCchhHHHHHHHHHHHHhCCCCcEEEEECCCccHHHHHHHHHHHh
Confidence 455567764 4555554333 333 4567666677888999999998764
No 83
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=35.84 E-value=21 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=27.2
Q ss_pred CCHHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCCc
Q 012530 103 WDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTP 154 (461)
Q Consensus 103 W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~p 154 (461)
--.++|+.+++.+. +||+| ..++.+|+.+|+..|--
T Consensus 19 Ek~~lL~~y~i~~~---qLPrI-------------~~~DPvar~~G~k~GdV 54 (78)
T 1hmj_A 19 EVEEILKRYNIKIQ---QLPKI-------------YEDDPVIQEIGAKEGDV 54 (78)
T ss_pred HHHHHHHHcCCCHH---HCCee-------------eCcCHhhHHhCCCCCCE
Confidence 34679999999874 67875 25777888999988743
No 84
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=35.27 E-value=1.1e+02 Score=30.38 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhC-CCC--ccEEEEeccCC-CCHHHHHHHHhh----h-CCc
Q 012530 319 LDSSEKQLALLYLATVQGIAYGTRH--------IVEHCNAH-GHK--IDTLLACGGLA-KNPLFLQQHADI----I-GCP 381 (461)
Q Consensus 319 ~~~~~~~l~~~~rAvlEgia~~~~~--------~~~~l~~~-g~~--~~~i~~~GGga-~s~~w~Qi~Adv----~-g~p 381 (461)
...+..|.. ++|-|.+.|.-...+ ++..+.+. +.. .-.|-+.|+.- +-|.+.+.+... + +.+
T Consensus 338 ~~~t~~d~~-~vr~i~~~V~~RaA~L~Aa~iaai~~k~~~~~~~~~~~~~VgvDGsvy~~~P~f~~~l~~~l~~l~~~~~ 416 (445)
T 3hm8_A 338 LPLTSDDAL-MVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCV 416 (445)
T ss_dssp CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECHHHHHCTTHHHHHHHHHHHHCTTEE
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcEEEEeceehccChhHHHHHHHHHHHhCCCCc
Confidence 355666654 577777777643333 23333221 222 22455667654 455555554443 3 367
Q ss_pred eeecCCCCchhHHHHHHHHHhcc
Q 012530 382 IILPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 382 V~~~~~~e~~alGaA~lA~~~~G 404 (461)
|.....++++.+|||++|+++..
T Consensus 417 v~~~~s~DGSg~GAAl~AA~a~~ 439 (445)
T 3hm8_A 417 VTFLQSEDGSGKGAALVTAVACR 439 (445)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHH
Confidence 87777889999999999998754
No 85
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=31.76 E-value=42 Score=30.56 Aligned_cols=59 Identities=24% Similarity=0.272 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEEeccCCCC-HHHHHHHHhhhCCceeecCC-CCchhHHHHHHHHH
Q 012530 336 GIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIGCPIILPRE-NESVLLGAAILGAV 401 (461)
Q Consensus 336 gia~~~~~~~~~l~~~g~~~~~i~~~GGga~s-~~w~Qi~Adv~g~pV~~~~~-~e~~alGaA~lA~~ 401 (461)
.++..+..++..+ .|+.|++.||.++. +.+.+.+. ...+|..... .+++++|||.++..
T Consensus 201 ~l~~~l~~l~~~l-----dP~~IvlgG~i~~~~~~~~~~~~--~~~~i~~s~l~~~a~~~GAa~l~~~ 261 (267)
T 1woq_A 201 LLQRYFSHVEFLF-----SPELFIVGGGISKRADEYLPNLR--LRTPIVPAVLRNEAGIVGAAIEIAL 261 (267)
T ss_dssp HHHHHHHHHHHHH-----CCSEEEEESGGGGGGGGTGGGCC--CSSCEEECSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----CCCEEEEeChhhcccHHHHHhhc--cCceEEECCcCCcHHHHHHHHHHHh
Confidence 3444444444443 46788888888764 33332221 2455665543 55688999988754
No 86
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=30.54 E-value=1.2e+02 Score=29.54 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=44.9
Q ss_pred CccEEEE--eccCCCCHHHHHHHHhh-----hCCceeecCCCCchhHHHHHHHHHhcccc--CCHHHHHHHhhc
Q 012530 354 KIDTLLA--CGGLAKNPLFLQQHADI-----IGCPIILPRENESVLLGAAILGAVAAKRY--SSLIEAMKAMNA 418 (461)
Q Consensus 354 ~~~~i~~--~GGga~s~~w~Qi~Adv-----~g~pV~~~~~~e~~alGaA~lA~~~~G~~--~~~~~a~~~~~~ 418 (461)
+++-|.+ .||..+.+...+-+.+. .++||++--.....-.|-.+|.-.++.++ +++++|+++++.
T Consensus 310 ~v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~~~l~~~g~~~~~~~~~~~aa~~~v~ 383 (388)
T 2nu8_B 310 KVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVA 383 (388)
T ss_dssp TCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCSSEEECSSHHHHHHHHHH
T ss_pred CCCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHCCCceecCCCHHHHHHHHHH
Confidence 4455555 68888888877766665 47898763222224578888877777888 899998877653
No 87
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=29.85 E-value=15 Score=36.14 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=31.7
Q ss_pred ccEEEEeccCCCCHHHHHHHHhhhCC----------------------ceeec---CCCCchhHHHHHHHHH
Q 012530 355 IDTLLACGGLAKNPLFLQQHADIIGC----------------------PIILP---RENESVLLGAAILGAV 401 (461)
Q Consensus 355 ~~~i~~~GGga~s~~w~Qi~Adv~g~----------------------pV~~~---~~~e~~alGaA~lA~~ 401 (461)
.++|+++||.++-+-+.+.+.+-++. .|.+. +...++.+|++++|..
T Consensus 316 ~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 316 YKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 46799999999998877766654332 23332 2234677899998864
No 88
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=28.04 E-value=1.6e+02 Score=28.70 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=45.3
Q ss_pred CccEEE--EeccCCCCHHHHHHHHhhh-----CCceeecCCCCchhHHHHHHHHHhcccc--CCHHHHHHHhhcC
Q 012530 354 KIDTLL--ACGGLAKNPLFLQQHADII-----GCPIILPRENESVLLGAAILGAVAAKRY--SSLIEAMKAMNAA 419 (461)
Q Consensus 354 ~~~~i~--~~GGga~s~~w~Qi~Adv~-----g~pV~~~~~~e~~alGaA~lA~~~~G~~--~~~~~a~~~~~~~ 419 (461)
+++-|. +.||..+.+...+-+.+.+ ++||.+--.....-.|-.+|...++.++ +++++|+++.+..
T Consensus 317 ~v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~ 391 (395)
T 2fp4_B 317 KVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVAS 391 (395)
T ss_dssp TCCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCCEECSSHHHHHHHHHHT
T ss_pred CCCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHCCCceEeCCCHHHHHHHHHHH
Confidence 344444 5688888888777666554 6788753222223458889988788888 9999998876543
No 89
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=26.12 E-value=49 Score=24.76 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=24.5
Q ss_pred HHHHHHcCCCccccccccccCccccCCCCcccCccCHHHHHHcCCCCCC
Q 012530 105 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 153 (461)
Q Consensus 105 ~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~v~~~~A~~~GL~~g~ 153 (461)
+++|+.+++... +||+| ..++.+|+.+|+.+|-
T Consensus 29 ~~ll~~y~i~~~---qLP~I-------------~~~DPva~~~g~k~Gd 61 (84)
T 4ayb_H 29 YKILKELGIRPE---QLPWI-------------RASDPVARSINAKPGD 61 (84)
T ss_dssp HHHHHHHTCCGG---GSCCE-------------ESSSHHHHHHTCCTTC
T ss_pred HHHHHHhcCCHh---HCCee-------------cccCHhHHhhCCCCCC
Confidence 468899999764 67875 2566788888888764
No 90
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=25.92 E-value=52 Score=32.46 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCC-CCHHHHHHHHhhh
Q 012530 332 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA-KNPLFLQQHADII 378 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga-~s~~w~Qi~Adv~ 378 (461)
-++|..+|+++..+-.+-..=..++.|+++||.. +|+..++.+.+-+
T Consensus 308 lA~d~f~yri~k~IGa~aa~LggvDaIVFTgGIGEns~~vR~~i~~~l 355 (415)
T 2e1z_A 308 LAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLIRQLVIEHL 355 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCEEEEEHHHHHHCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccccCHHHHHHHHhhH
Confidence 5889999999988887765323589999999988 9999988776553
No 91
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.71 E-value=91 Score=17.16 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012530 436 DAKYLIFRELFEQQVSQRSIM 456 (461)
Q Consensus 436 ~~~y~~y~~l~~~~~~~~~~~ 456 (461)
+++|+....+.+.++..++.+
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455656666666666666554
No 92
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=25.38 E-value=67 Score=31.30 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCC-CCHHHHHHHHhh
Q 012530 331 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADI 377 (461)
Q Consensus 331 rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga-~s~~w~Qi~Adv 377 (461)
+-++|..+|+++..+-.+-. .+ .++.|+++||.. .|+..++.+.+-
T Consensus 290 ~lA~d~f~yri~k~IGa~aa~L~-gvDaIVFTgGIgEns~~iR~~i~~~ 337 (384)
T 3khy_A 290 KLAIEIFSHRVAKFVASYMIYFN-KLDALVFTGGIGENAANIRKNIISK 337 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCS-SCCEEEEEHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhh
Confidence 46899999999988887755 35 689999999987 778788765543
No 93
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=25.10 E-value=64 Score=31.71 Aligned_cols=46 Identities=11% Similarity=0.251 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCC-CCHHHHHHHHhhh
Q 012530 332 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADII 378 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga-~s~~w~Qi~Adv~ 378 (461)
-++|..+|+++..+-.+-. .| .++.|+++||.. +|+..++.+.+-+
T Consensus 300 lA~d~f~yri~k~IGa~~a~Lg-gvDaIVFTgGIGEns~~vR~~i~~~l 347 (403)
T 2iir_A 300 LVLEIYDYRIAKYIGAYAAAMN-GVDAIVFTAGVGENSPITREDVCSYL 347 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-CCSEEEEEHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECcccccCCHHHHHHHHhhh
Confidence 5888899999888776654 35 589999999988 8998888776554
No 94
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=23.72 E-value=1.7e+02 Score=27.84 Aligned_cols=68 Identities=12% Similarity=-0.062 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCccEEEEeccCCCCHHHHHHHHhhhCCcee-----e-cCC-CCchhHHH
Q 012530 324 KQLALLYLATVQGIAYGTRHIVEHCN-AHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-----L-PRE-NESVLLGA 395 (461)
Q Consensus 324 ~~l~~~~rAvlEgia~~~~~~~~~l~-~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~-----~-~~~-~e~~alGa 395 (461)
.+...+.+.++|-..=.+...++.+- +.+. ++|+++|+| +.+..-+|+. +|+. + ++. .-+.|+|+
T Consensus 246 ~~~~~lA~~~~~~q~~~I~~av~~v~~~~~~--~~vv~aG~G---~~L~~~la~~--~~~~~~~~~i~~~~s~vapA~av 318 (334)
T 3cet_A 246 IDAENIAKNYYELWKELILENVENVAEKYGS--KKVVITGLG---ENILKDALAD--FEVISVAERYGKDVSLATPSFAV 318 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEESTT---HHHHHHHTTT--SEEEEHHHHHCHHHHHSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEeCCc---HHHHHHHHhh--CCeeehhcccCcccccccCHHHH
Confidence 33333445666666655555554443 2233 389999988 4666666665 7776 3 221 23457788
Q ss_pred HHH
Q 012530 396 AIL 398 (461)
Q Consensus 396 A~l 398 (461)
|+|
T Consensus 319 A~l 321 (334)
T 3cet_A 319 AEL 321 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 95
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=21.73 E-value=53 Score=32.31 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccCC-CCHHHHHHHHhhh
Q 012530 332 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADII 378 (461)
Q Consensus 332 AvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga-~s~~w~Qi~Adv~ 378 (461)
-++|..+|+++..+-.+-. .| .++.|+++||.. +|+..++.+.+-+
T Consensus 300 lA~d~f~yri~k~IGa~~a~Lg-gvDaiVFTgGIGEns~~vR~~i~~~l 347 (408)
T 1g99_A 300 LALEIFAYKVKKFIGEYSAVLN-GADAVVFTAGIGENSASIRKRILTGL 347 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SCSEEEEEHHHHHHCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhC-CCCEEEECccccccCHHHHHHHHhhh
Confidence 5889999999888877654 44 589999999988 9999888777553
No 96
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=20.52 E-value=80 Score=34.68 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=30.4
Q ss_pred EEEEeccCC-CCHHHHHHHHh----hh-CCceeecCCCCchhHHHHHHHHHhcc
Q 012530 357 TLLACGGLA-KNPLFLQQHAD----II-GCPIILPRENESVLLGAAILGAVAAK 404 (461)
Q Consensus 357 ~i~~~GGga-~s~~w~Qi~Ad----v~-g~pV~~~~~~e~~alGaA~lA~~~~G 404 (461)
.|.+.||.. +-|.+...+.. +. +.+|.....++++.+|||++|+++..
T Consensus 857 ~V~vdGsv~~~~p~f~~~~~~~l~~l~~~~~v~~~~~~dgsg~GAAl~aa~~~~ 910 (917)
T 1cza_N 857 TVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVGVR 910 (917)
T ss_dssp EEEEECHHHHHCTTHHHHHHHHHHHHSTTEEEEEEECSSCSHHHHHHHHHHHHH
T ss_pred EEEECCHHHHcCcHHHHHHHHHHHHhCCCCceEEEEecCChHHHHHHHHHHHHH
Confidence 455556654 34444444433 32 34566656788999999999999753
Done!