BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012532
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/383 (53%), Positives = 263/383 (68%), Gaps = 16/383 (4%)
Query: 73 SGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGL 132
SGV G +++Y + S+ GY L R+PH NK LAF+ +ER + GL
Sbjct: 9 SGVDLGTENLYFQ--------------SMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGL 54
Query: 133 LPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYT 192
LPP+ SQE+QV +++ N +Y+ +MDLQ+RN+KLFY++L ++E+ +PIVYT
Sbjct: 55 LPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYT 114
Query: 193 PTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG 252
PTVG ACQ+Y ++ +P+G+FI++ D+G + VL WPE I+ IVVTDGERILGLGDLG
Sbjct: 115 PTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLG 174
Query: 253 CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAE 312
C+GMGIPVGKL+LYTA GG+ P CLPV +DVGT NE+LL D YIGLRQ+R G EY +
Sbjct: 175 CNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDD 234
Query: 313 LLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLIS 372
L EFM AV YG LIQFEDFAN NAF LL KY + FNDDIQGTASV +AGL++
Sbjct: 235 FLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLA 294
Query: 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432
A++ L+DQ LF GAGEA GIA LI + + K+ +P E+ KKIWLVDSKGLIV
Sbjct: 295 ALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVK 353
Query: 433 SRLESLQHFKKPWAHEHEPVKEL 455
R SL K+ +AHEHE +K L
Sbjct: 354 GR-ASLTQEKEKFAHEHEEMKNL 375
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/356 (55%), Positives = 242/356 (67%), Gaps = 2/356 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
GY +LRDPH NKG AF+ +ER + GLLPP + Q+ QV +L N + L +Y+
Sbjct: 3 GYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ LQ+RN+KLFYK+L ++E PIVYTPTVG ACQ YG + RP+G+FI++ D+G +
Sbjct: 63 LXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
L++WPE I+ IVVTDGERILGLGDLGC+G GIPVGKL+LYTA GG++P CLPV +D
Sbjct: 123 TXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLD 182
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+NE LL D YIGLR KR GQ Y +LL EF AV YG LIQFEDFAN NAF
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFR 242
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
LL KY + FNDDIQGTASV +AGL++A++ L+D LF GAGEA GIA LI
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 459
K+ + EE K+IW VDSKGLIV R SL K+ +AHEH K L D V
Sbjct: 303 XAXQKE-GVSKEEAIKRIWXVDSKGLIVKGR-ASLTPEKEHFAHEHCEXKNLEDIV 356
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 253/360 (70%), Gaps = 3/360 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L+ +P NKG+AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 6 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIY 65
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+M +QERN+KLFY++L D++E L+PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 66 IMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 125
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +GMGIPVGKL LYTA GIRP CLPV ID
Sbjct: 126 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCID 185
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY+GL QKR Q+Y +L+ EFM A+ YG LIQFEDF NHNAF
Sbjct: 186 VGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFR 245
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 246 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 305
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNV 461
+ + + + +E +KKIW+ D GL+V R + +++P+ H E + + DAVN+
Sbjct: 306 MSMV-ENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 364
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/360 (50%), Positives = 243/360 (67%), Gaps = 3/360 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNV 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN+
Sbjct: 325 XSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 383
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/360 (50%), Positives = 243/360 (67%), Gaps = 3/360 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 5 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 64
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 65 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 124
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 125 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 184
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 185 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 244
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 245 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 304
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNV 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN+
Sbjct: 305 XSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 363
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/360 (50%), Positives = 243/360 (67%), Gaps = 3/360 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNV 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN+
Sbjct: 325 XSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 383
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 358 bits (920), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 182/360 (50%), Positives = 243/360 (67%), Gaps = 3/360 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 3 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 62
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 63 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 122
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 123 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 182
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 183 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 242
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 243 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 302
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNV 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN+
Sbjct: 303 XSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 361
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 358 bits (918), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 244/345 (70%), Gaps = 7/345 (2%)
Query: 94 VTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQ 153
VTP S LL++P NKG+ FS ER L GLLPP ++QE Q +++ +R+
Sbjct: 33 VTPKKRSA----ELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLRE 88
Query: 154 YQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVF 213
L +Y+ + LQ+RN+KLFY+++ D+V+EL+PIVYTPTVG ACQ +G IY +P+G++
Sbjct: 89 QPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLY 148
Query: 214 ISLKDKG--KVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGG 271
I++ D K+ ++L NW E++++ IVVTDGERILGLGDLG +G+GIPVGKL+LY ALGG
Sbjct: 149 ITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGG 208
Query: 272 IRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI 331
++P CLPV +DVGTNN LL+D FYIGLR KR G++Y LL FM A + YG++ LI
Sbjct: 209 VQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLI 268
Query: 332 QFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391
QFEDFAN NAF LL+KY + +FNDDIQGTASV++AGL++ + ++ +++LF GA
Sbjct: 269 QFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGA 328
Query: 392 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE 436
G A TGIAE+I ++ + + EE +I+L+D GL+ +R E
Sbjct: 329 GAASTGIAEMIVHQMQNE-GISKEEACNRIYLMDIDGLVTKNRKE 372
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 126/268 (47%), Gaps = 57/268 (21%)
Query: 177 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 236
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 237 IVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDE 295
VV+DG RILGLG++G G+ + GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGV---------------------DA 105
Query: 296 FYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTH--L 353
F I +++ QE + + + + A+ +G I ED A+ F +LE+
Sbjct: 106 FPIXIKE-----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 354 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMP 413
VF+DD QGTA+VVLAGL++A+K +G +++ GAG AG L I + +
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGVK 211
Query: 414 LEETRKKIWLVDSKGLIVSSRLESLQHF 441
E R + LV+ K I++S L+ + F
Sbjct: 212 PENVR-VVELVNGKPRILTSDLDLEKLF 238
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 127/269 (47%), Gaps = 59/269 (21%)
Query: 177 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 236
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 237 IVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294
VV+DG RILGLG++G G+PV GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---------------------D 104
Query: 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTH-- 352
F I +++ QE + + + + A+ +G I ED A+ F +LE+
Sbjct: 105 AFPIMIKE-----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDI 155
Query: 353 LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNM 412
VF+DD QGTA+VVLAGL++A+K +G +++ GAG AG L I + +
Sbjct: 156 PVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGV 210
Query: 413 PLEETRKKIWLVDSKGLIVSSRLESLQHF 441
E R + LV+ K I++S L+ + F
Sbjct: 211 KPENVR-VVELVNGKPRILTSDLDLEKLF 238
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 38/215 (17%)
Query: 236 VIVVTDGERILGLGDLGC-HGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294
V VV+D R+LG GD+ G+G+ GK L LGGI +P+ ID
Sbjct: 93 VGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICID----------- 138
Query: 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLE--KYGTTH 352
K G+ + + EF+ ++ +G I ED + N + +L+ +
Sbjct: 139 -------SKNKEGKNDPDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCDI 188
Query: 353 LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNM 412
V++DD QGTASV LAGL++A+K + + + R +F+GAG + T LI +
Sbjct: 189 PVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP--- 245
Query: 413 PLEETRKKIWLVDSKGLIVSSR--LESLQHFKKPW 445
KKI + DSKG + + R ++ F + W
Sbjct: 246 ------KKIVMFDSKGSLHNGREDIKKDTRFYRKW 274
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 97/248 (39%), Gaps = 63/248 (25%)
Query: 187 LPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERIL 246
L I YTP V KDK + + K V V++DG +L
Sbjct: 36 LSIAYTPGVASVSSAIA-------------KDK----TLAYDLTTKKNTVAVISDGTAVL 78
Query: 247 GLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKR 304
GLGD+G +PV GK +L+ A G+ +P+ +D E
Sbjct: 79 GLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLDTKDTEE--------------- 119
Query: 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKY-GTTHL-VFNDDIQGT 362
+ + A+ +G I ED + F++ ++ H+ VF+DD GT
Sbjct: 120 ---------IISIVKALAPTFGG---INLEDISAPRCFEIEQRLIKECHIPVFHDDQHGT 167
Query: 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 422
A VVLA + +++K L SL + + G G AG I T L K+
Sbjct: 168 AIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSI-----------TRKLLAAGATKVT 216
Query: 423 LVDSKGLI 430
+VD G+I
Sbjct: 217 VVDKFGII 224
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 106/263 (40%), Gaps = 64/263 (24%)
Query: 173 KLFYKLLIDNVE-ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPE 231
K+ L ++ V+ E L ++YTP V + + +D K W
Sbjct: 25 KIRTALPVEKVDRETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN- 70
Query: 232 KNIQVIVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNE 289
V VV+DG +LGLG++G +G +PV GK L+ A I
Sbjct: 71 ---TVAVVSDGSAVLGLGNIGPYG-ALPVXEGKAFLFKAFADI----------------- 109
Query: 290 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYG 349
D F I L + E + + +++ ++G I ED F +L++
Sbjct: 110 ----DAFPICLSESEE------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLS 156
Query: 350 TTH--LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIS 407
VF+DD QGTA VV A ++A+K + + + + G G AG I + +
Sbjct: 157 EEXNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL----- 211
Query: 408 KQTNMPLEETRKKIWLVDSKGLI 430
L+ K + VD KG++
Sbjct: 212 ------LDLGVKNVVAVDRKGIL 228
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 106/263 (40%), Gaps = 64/263 (24%)
Query: 173 KLFYKLLIDNVE-ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPE 231
K+ L ++ V+ E L ++YTP V + + +D K W
Sbjct: 15 KIRTALPVEKVDRETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN- 60
Query: 232 KNIQVIVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNE 289
V VV+DG +LGLG++G +G +PV GK L+ A I
Sbjct: 61 ---TVAVVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI----------------- 99
Query: 290 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYG 349
D F I L + E + + +++ ++G I ED F +L++
Sbjct: 100 ----DAFPICLSESEE------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLS 146
Query: 350 TTH--LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIS 407
VF+DD QGTA VV A ++A+K + + + + G G AG I + +
Sbjct: 147 EEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL----- 201
Query: 408 KQTNMPLEETRKKIWLVDSKGLI 430
L+ K + VD KG++
Sbjct: 202 ------LDLGVKNVVAVDRKGIL 218
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 211 GVFISLKDKGKVLEVLRNWP---EKNIQVIVVTDGERILGLG 249
G+ I + G++L+ ++N P KN+Q +V+ + +RIL +G
Sbjct: 176 GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG 217
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 368 AVVDLQDRNTELSYQLLLDSI 388
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 357 AVVDLQDRNTELSYQLLLDSI 377
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 356 AVVDLQDRNTELSYQLLLDSI 376
>pdb|3M3R|A Chain A, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|B Chain B, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|C Chain C, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|D Chain D, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|E Chain E, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|F Chain F, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|G Chain G, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
Length = 293
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)
Query: 247 GLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 306
G D+G + + G L Y G+ ID +N+KLL +R K I
Sbjct: 10 GTTDIGSNTT-VKTGDLVTYDKENGMHKKVFYSF-IDDKNHNKKLL------VIRTKGTI 61
Query: 307 GQEYAELLHEFMTA----------VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN 356
+Y E V+ + + Q D+ N+ D E + T FN
Sbjct: 62 AGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYFSTLTYGFN 121
Query: 357 DDIQGTASVVLAGLISAMKFLGGSL 381
++ G + + GLI A +G +L
Sbjct: 122 GNVTGDDTGKIGGLIGANVSIGHTL 146
>pdb|3M2L|A Chain A, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|B Chain B, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|C Chain C, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|D Chain D, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|E Chain E, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|F Chain F, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|G Chain G, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
Length = 294
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)
Query: 247 GLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 306
G D+G + + G L Y G+ ID +N+KLL +R K I
Sbjct: 11 GTTDIGSNTT-VKTGDLVTYDKENGMHKKVFYSF-IDDKNHNKKLL------VIRTKGTI 62
Query: 307 GQEYAELLHEFMTA----------VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN 356
+Y E V+ + + Q D+ N+ D E + T FN
Sbjct: 63 AGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYFSTLTYGFN 122
Query: 357 DDIQGTASVVLAGLISAMKFLGGSL 381
++ G + + GLI A +G +L
Sbjct: 123 GNVTGDDTGKIGGLIGANVSIGHTL 147
>pdb|2OBE|A Chain A, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|B Chain B, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|C Chain C, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
Length = 932
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 338 AVVDLQDRNTELSYQLLLDSL 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,878,981
Number of Sequences: 62578
Number of extensions: 601430
Number of successful extensions: 1525
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1484
Number of HSP's gapped (non-prelim): 27
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)