Query 012532
Match_columns 461
No_of_seqs 231 out of 1434
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 4E-154 8E-159 1196.5 32.1 379 82-461 8-387 (582)
2 PRK13529 malate dehydrogenase; 100.0 1E-144 2E-149 1143.6 33.3 360 99-461 12-380 (563)
3 PLN03129 NADP-dependent malic 100.0 3E-144 7E-149 1143.1 33.8 361 101-461 39-399 (581)
4 PTZ00317 NADP-dependent malic 100.0 5E-144 1E-148 1137.8 33.1 362 98-461 13-379 (559)
5 PF00390 malic: Malic enzyme, 100.0 4.8E-86 1E-90 616.9 9.2 182 168-349 1-182 (182)
6 COG0281 SfcA Malic enzyme [Ene 100.0 1E-70 2.2E-75 563.9 17.1 258 137-453 1-262 (432)
7 PRK12861 malic enzyme; Reviewe 100.0 3.8E-66 8.2E-71 564.0 18.3 221 184-461 34-257 (764)
8 PRK12862 malic enzyme; Reviewe 100.0 1.3E-64 2.8E-69 553.7 18.6 220 184-461 38-261 (763)
9 PRK07232 bifunctional malic en 100.0 1.6E-64 3.6E-69 551.1 18.6 220 184-461 30-253 (752)
10 PF03949 Malic_M: Malic enzyme 100.0 2.9E-30 6.2E-35 252.9 9.4 101 359-461 1-104 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 3.6E-29 7.8E-34 245.1 10.5 100 359-460 1-103 (254)
12 cd05312 NAD_bind_1_malic_enz N 100.0 5.1E-29 1.1E-33 246.8 10.3 100 359-460 1-102 (279)
13 cd05311 NAD_bind_2_malic_enz N 99.7 2.9E-17 6.4E-22 157.7 9.0 93 359-460 1-96 (226)
14 cd05191 NAD_bind_amino_acid_DH 97.3 0.001 2.2E-08 54.8 7.4 62 361-433 1-62 (86)
15 PRK14031 glutamate dehydrogena 95.4 0.19 4E-06 54.2 12.4 125 305-442 134-274 (444)
16 PRK05476 S-adenosyl-L-homocyst 95.3 0.16 3.5E-06 54.3 11.3 102 304-427 105-244 (425)
17 PRK09414 glutamate dehydrogena 94.7 0.4 8.7E-06 51.7 12.5 117 305-434 138-272 (445)
18 PRK14982 acyl-ACP reductase; P 94.6 0.12 2.7E-06 53.7 8.2 56 362-427 134-190 (340)
19 PLN02477 glutamate dehydrogena 94.4 0.56 1.2E-05 50.0 12.7 117 305-434 112-246 (410)
20 PTZ00079 NADP-specific glutama 94.4 0.51 1.1E-05 51.1 12.4 121 305-440 143-281 (454)
21 cd01078 NAD_bind_H4MPT_DH NADP 93.9 0.21 4.6E-06 46.3 7.4 43 362-404 7-50 (194)
22 PRK14030 glutamate dehydrogena 93.6 1.1 2.3E-05 48.5 12.9 123 305-441 134-273 (445)
23 PRK12549 shikimate 5-dehydroge 93.5 0.18 4E-06 50.5 6.6 57 352-427 104-160 (284)
24 PRK12749 quinate/shikimate deh 92.3 0.31 6.7E-06 49.2 6.4 57 352-427 101-157 (288)
25 TIGR00936 ahcY adenosylhomocys 92.2 0.96 2.1E-05 48.2 10.1 50 351-403 156-215 (406)
26 PRK12548 shikimate 5-dehydroge 92.2 0.41 9E-06 47.9 7.1 58 351-427 102-159 (289)
27 PRK08328 hypothetical protein; 91.9 0.1 2.2E-06 50.7 2.3 54 345-427 7-60 (231)
28 cd01065 NAD_bind_Shikimate_DH 91.8 0.51 1.1E-05 41.5 6.5 37 368-404 4-40 (155)
29 TIGR01809 Shik-DH-AROM shikima 91.7 0.39 8.5E-06 48.0 6.3 57 351-426 99-157 (282)
30 PF01488 Shikimate_DH: Shikima 91.7 0.31 6.7E-06 43.4 5.0 37 379-426 8-44 (135)
31 PRK14027 quinate/shikimate deh 91.4 0.43 9.3E-06 48.1 6.2 57 351-426 103-159 (283)
32 cd00401 AdoHcyase S-adenosyl-L 91.4 1.2 2.5E-05 47.7 9.7 51 351-404 163-223 (413)
33 cd05213 NAD_bind_Glutamyl_tRNA 91.1 0.65 1.4E-05 46.9 7.2 72 339-426 139-210 (311)
34 TIGR02853 spore_dpaA dipicolin 90.8 0.72 1.6E-05 46.5 7.2 57 359-427 127-183 (287)
35 PRK00258 aroE shikimate 5-dehy 90.8 0.61 1.3E-05 46.3 6.5 58 351-427 98-156 (278)
36 cd05211 NAD_bind_Glu_Leu_Phe_V 90.1 1 2.2E-05 43.9 7.3 61 362-433 2-62 (217)
37 COG0169 AroE Shikimate 5-dehyd 89.2 0.88 1.9E-05 46.3 6.3 47 369-426 110-158 (283)
38 PF00899 ThiF: ThiF family; I 88.9 0.68 1.5E-05 40.7 4.7 37 382-429 1-37 (135)
39 cd05313 NAD_bind_2_Glu_DH NAD( 88.4 1.8 3.9E-05 43.5 7.8 62 361-434 16-78 (254)
40 PTZ00075 Adenosylhomocysteinas 87.9 5.9 0.00013 43.4 11.9 54 351-404 215-275 (476)
41 PRK15317 alkyl hydroperoxide r 87.3 1 2.2E-05 48.4 5.7 85 331-427 148-243 (517)
42 TIGR03140 AhpF alkyl hydropero 87.3 2 4.3E-05 46.3 7.9 86 316-404 137-233 (515)
43 cd01076 NAD_bind_1_Glu_DH NAD( 87.3 2.1 4.5E-05 41.9 7.3 64 360-434 8-71 (227)
44 PRK00045 hemA glutamyl-tRNA re 87.2 1.3 2.8E-05 46.8 6.3 55 361-427 161-215 (423)
45 PRK08306 dipicolinate synthase 87.2 1.7 3.7E-05 43.9 6.9 52 364-427 133-184 (296)
46 cd01075 NAD_bind_Leu_Phe_Val_D 87.1 2.3 4.9E-05 40.6 7.4 55 361-427 4-60 (200)
47 TIGR01035 hemA glutamyl-tRNA r 87.0 1.5 3.2E-05 46.4 6.6 56 360-427 158-213 (417)
48 TIGR02354 thiF_fam2 thiamine b 86.8 0.74 1.6E-05 44.1 3.9 39 379-428 17-55 (200)
49 PRK12550 shikimate 5-dehydroge 86.0 1.8 3.9E-05 43.5 6.3 56 351-426 99-154 (272)
50 cd01080 NAD_bind_m-THF_DH_Cycl 85.5 2.2 4.8E-05 40.1 6.3 47 369-427 30-77 (168)
51 PRK08644 thiamine biosynthesis 85.3 0.94 2E-05 43.7 3.8 38 379-427 24-61 (212)
52 PRK14192 bifunctional 5,10-met 85.2 1.5 3.3E-05 44.4 5.4 55 361-427 137-192 (283)
53 TIGR02356 adenyl_thiF thiazole 85.0 1.2 2.5E-05 42.5 4.2 38 379-427 17-54 (202)
54 PRK13940 glutamyl-tRNA reducta 84.5 2.1 4.5E-05 45.6 6.3 73 339-427 142-214 (414)
55 COG0373 HemA Glutamyl-tRNA red 84.5 2 4.4E-05 46.1 6.1 72 339-426 139-210 (414)
56 PRK00676 hemA glutamyl-tRNA re 84.2 1.8 3.8E-05 45.3 5.4 71 339-428 136-208 (338)
57 cd00757 ThiF_MoeB_HesA_family 84.2 1.2 2.6E-05 42.9 4.1 39 379-428 17-55 (228)
58 PRK12475 thiamine/molybdopteri 84.0 1.2 2.6E-05 46.1 4.1 39 379-428 20-58 (338)
59 PF07992 Pyr_redox_2: Pyridine 83.4 1.8 3.8E-05 39.1 4.5 32 385-428 1-32 (201)
60 TIGR02355 moeB molybdopterin s 83.3 1.4 3E-05 43.4 4.0 40 379-429 20-59 (240)
61 TIGR00507 aroE shikimate 5-deh 83.1 2.9 6.3E-05 41.2 6.3 46 351-404 93-138 (270)
62 PRK09310 aroDE bifunctional 3- 82.7 2.6 5.7E-05 45.5 6.2 37 368-404 317-353 (477)
63 PRK05600 thiamine biosynthesis 82.7 1.3 2.7E-05 46.5 3.7 40 379-429 37-76 (370)
64 cd01485 E1-1_like Ubiquitin ac 82.2 1.2 2.7E-05 42.3 3.2 40 379-429 15-54 (198)
65 KOG0029 Amine oxidase [Seconda 82.0 0.74 1.6E-05 50.2 1.8 37 381-420 13-49 (501)
66 PRK08223 hypothetical protein; 81.8 0.9 2E-05 46.4 2.2 59 342-429 4-62 (287)
67 PRK05690 molybdopterin biosynt 81.0 2.1 4.5E-05 42.2 4.4 38 379-427 28-65 (245)
68 PLN00203 glutamyl-tRNA reducta 80.7 3.1 6.8E-05 45.7 6.0 74 339-427 225-299 (519)
69 cd01492 Aos1_SUMO Ubiquitin ac 80.5 1.4 3E-05 42.0 2.9 39 379-428 17-55 (197)
70 KOG0685 Flavin-containing amin 79.9 0.97 2.1E-05 49.3 1.8 26 379-404 17-42 (498)
71 cd01483 E1_enzyme_family Super 79.7 2.6 5.7E-05 37.2 4.2 33 385-428 1-33 (143)
72 TIGR01408 Ube1 ubiquitin-activ 79.4 0.99 2.2E-05 53.2 1.8 90 314-429 358-459 (1008)
73 cd01487 E1_ThiF_like E1_ThiF_l 79.1 2.7 5.8E-05 39.3 4.2 33 385-428 1-33 (174)
74 PRK00257 erythronate-4-phospha 78.6 5.1 0.00011 42.4 6.6 53 362-426 95-147 (381)
75 PRK08762 molybdopterin biosynt 78.5 2.1 4.7E-05 44.4 3.7 38 379-427 131-168 (376)
76 TIGR01381 E1_like_apg7 E1-like 77.8 2.2 4.7E-05 48.3 3.7 40 379-429 334-373 (664)
77 cd00755 YgdL_like Family of ac 77.8 2.6 5.6E-05 41.5 3.9 39 379-428 7-45 (231)
78 PRK08605 D-lactate dehydrogena 77.5 16 0.00034 37.6 9.6 99 315-427 59-179 (332)
79 PF02737 3HCDH_N: 3-hydroxyacy 77.0 3.5 7.5E-05 38.7 4.3 33 385-429 1-33 (180)
80 PF01494 FAD_binding_3: FAD bi 77.0 3.2 7E-05 40.0 4.3 35 384-430 2-36 (356)
81 PRK14175 bifunctional 5,10-met 76.7 5.1 0.00011 41.0 5.7 55 361-427 136-191 (286)
82 PLN02928 oxidoreductase family 76.2 7.4 0.00016 40.4 6.9 56 360-427 120-191 (347)
83 PRK07688 thiamine/molybdopteri 76.2 3.3 7.1E-05 42.9 4.3 39 379-428 20-58 (339)
84 PRK05597 molybdopterin biosynt 75.9 3.2 7E-05 43.1 4.2 39 379-428 24-62 (355)
85 PRK15116 sulfur acceptor prote 75.4 3.6 7.9E-05 41.6 4.3 43 379-432 26-68 (268)
86 PLN02520 bifunctional 3-dehydr 75.2 6.4 0.00014 43.1 6.4 27 378-404 374-400 (529)
87 PF00070 Pyr_redox: Pyridine n 74.8 5.8 0.00013 31.7 4.5 35 385-431 1-35 (80)
88 PF13738 Pyr_redox_3: Pyridine 73.3 4.1 8.8E-05 37.0 3.7 30 387-427 1-30 (203)
89 PRK09754 phenylpropionate diox 73.3 5.3 0.00012 41.1 5.0 36 382-427 2-37 (396)
90 PRK07878 molybdopterin biosynt 72.7 3.3 7.2E-05 43.5 3.4 38 379-427 38-75 (392)
91 PLN02494 adenosylhomocysteinas 72.2 7.1 0.00015 42.8 5.8 50 351-403 215-274 (477)
92 cd00529 RuvC_resolvase Hollida 71.7 30 0.00064 31.8 8.9 112 244-396 1-118 (154)
93 PRK07411 hypothetical protein; 71.5 4.1 8.9E-05 42.9 3.7 40 378-428 33-72 (390)
94 TIGR01292 TRX_reduct thioredox 71.1 5.1 0.00011 38.2 4.0 31 385-427 2-32 (300)
95 COG0334 GdhA Glutamate dehydro 71.1 44 0.00096 36.2 11.2 120 303-433 110-246 (411)
96 PF02826 2-Hacid_dh_C: D-isome 71.0 7.8 0.00017 35.9 5.0 44 374-429 27-70 (178)
97 PRK15438 erythronate-4-phospha 70.8 11 0.00023 40.1 6.6 54 361-426 94-147 (378)
98 cd01491 Ube1_repeat1 Ubiquitin 70.4 4.1 8.8E-05 41.6 3.3 39 379-428 15-53 (286)
99 PRK14194 bifunctional 5,10-met 70.4 8.1 0.00017 40.0 5.4 43 363-405 139-182 (301)
100 KOG2304 3-hydroxyacyl-CoA dehy 68.7 4.6 9.9E-05 41.1 3.1 32 384-427 12-43 (298)
101 PRK11883 protoporphyrinogen ox 68.3 3.4 7.4E-05 42.3 2.3 22 384-405 1-22 (451)
102 cd01484 E1-2_like Ubiquitin ac 68.3 6.9 0.00015 38.7 4.3 34 385-429 1-34 (234)
103 KOG2337 Ubiquitin activating E 68.2 4.6 9.9E-05 45.0 3.3 37 381-428 338-374 (669)
104 PF00208 ELFV_dehydrog: Glutam 68.1 13 0.00028 36.9 6.2 65 359-434 7-72 (244)
105 cd01486 Apg7 Apg7 is an E1-lik 67.5 7 0.00015 40.6 4.3 33 385-428 1-33 (307)
106 PF05834 Lycopene_cycl: Lycope 67.5 6.9 0.00015 40.3 4.3 35 386-430 2-36 (374)
107 TIGR02028 ChlP geranylgeranyl 66.9 6.6 0.00014 40.8 4.0 31 385-427 2-32 (398)
108 COG5322 Predicted dehydrogenas 66.8 7.9 0.00017 40.3 4.4 45 360-404 144-189 (351)
109 TIGR03366 HpnZ_proposed putati 66.7 18 0.0004 35.1 6.9 47 368-426 107-153 (280)
110 TIGR02023 BchP-ChlP geranylger 66.6 6.9 0.00015 40.1 4.1 31 385-427 2-32 (388)
111 cd01488 Uba3_RUB Ubiquitin act 65.8 7.7 0.00017 39.8 4.2 34 385-429 1-34 (291)
112 PRK09260 3-hydroxybutyryl-CoA 65.6 8.3 0.00018 38.2 4.3 32 384-427 2-33 (288)
113 PRK07236 hypothetical protein; 65.3 9.4 0.0002 38.9 4.7 24 381-404 4-27 (386)
114 PRK06153 hypothetical protein; 65.2 5.5 0.00012 42.6 3.1 100 307-427 110-209 (393)
115 PRK06184 hypothetical protein; 65.1 8.4 0.00018 41.0 4.5 34 382-427 2-35 (502)
116 PF13454 NAD_binding_9: FAD-NA 64.9 6.8 0.00015 35.4 3.3 36 387-429 1-36 (156)
117 PRK06035 3-hydroxyacyl-CoA deh 64.8 8.9 0.00019 38.0 4.3 32 384-427 4-35 (291)
118 PRK06847 hypothetical protein; 64.4 9.2 0.0002 38.3 4.4 22 383-404 4-25 (375)
119 PRK12480 D-lactate dehydrogena 64.3 21 0.00045 36.8 7.0 55 361-427 105-178 (330)
120 PRK12409 D-amino acid dehydrog 64.2 8.8 0.00019 39.3 4.3 33 384-428 2-34 (410)
121 PF01266 DAO: FAD dependent ox 63.6 9.9 0.00021 36.7 4.3 33 385-429 1-33 (358)
122 PLN02172 flavin-containing mon 63.5 9.9 0.00021 40.9 4.7 25 380-404 7-31 (461)
123 TIGR03169 Nterm_to_SelD pyridi 63.5 5.1 0.00011 40.3 2.4 37 385-430 1-37 (364)
124 PRK08163 salicylate hydroxylas 63.2 9.4 0.0002 38.6 4.3 22 383-404 4-25 (396)
125 PRK12771 putative glutamate sy 63.0 15 0.00032 40.1 5.9 36 380-427 134-169 (564)
126 PRK09126 hypothetical protein; 62.6 9.7 0.00021 38.5 4.2 33 383-427 3-35 (392)
127 PF03807 F420_oxidored: NADP o 62.3 14 0.0003 30.1 4.4 33 385-426 1-34 (96)
128 PRK08293 3-hydroxybutyryl-CoA 62.2 11 0.00023 37.5 4.3 32 384-427 4-35 (287)
129 cd01489 Uba2_SUMO Ubiquitin ac 61.8 11 0.00024 39.0 4.5 34 385-429 1-34 (312)
130 PRK06718 precorrin-2 dehydroge 61.8 12 0.00025 36.0 4.4 26 380-405 7-32 (202)
131 PRK09880 L-idonate 5-dehydroge 61.6 21 0.00046 35.7 6.4 32 370-402 158-189 (343)
132 TIGR01470 cysG_Nterm siroheme 61.6 12 0.00025 36.1 4.3 26 380-405 6-31 (205)
133 TIGR01790 carotene-cycl lycope 61.5 9.4 0.0002 38.6 3.9 31 386-428 2-32 (388)
134 PRK07819 3-hydroxybutyryl-CoA 61.4 11 0.00023 37.9 4.2 31 384-426 6-36 (286)
135 PRK04176 ribulose-1,5-biphosph 60.9 11 0.00023 37.4 4.1 34 383-428 25-58 (257)
136 PRK01438 murD UDP-N-acetylmura 60.7 14 0.00029 39.2 5.1 28 377-404 10-37 (480)
137 TIGR01316 gltA glutamate synth 60.3 13 0.00028 39.4 4.9 36 380-427 130-165 (449)
138 PRK13243 glyoxylate reductase; 60.2 27 0.00058 36.0 6.9 38 378-427 145-182 (333)
139 PRK14106 murD UDP-N-acetylmura 60.2 13 0.00027 38.9 4.7 36 380-427 2-37 (450)
140 PRK07364 2-octaprenyl-6-methox 60.1 9.9 0.00021 38.7 3.8 22 383-404 18-39 (415)
141 PRK07530 3-hydroxybutyryl-CoA 60.1 12 0.00026 37.1 4.3 32 384-427 5-36 (292)
142 COG0644 FixC Dehydrogenases (f 59.5 11 0.00025 38.9 4.2 37 384-432 4-40 (396)
143 PLN02306 hydroxypyruvate reduc 59.4 27 0.00058 37.1 6.9 68 349-427 107-198 (386)
144 PTZ00082 L-lactate dehydrogena 59.3 14 0.00029 38.0 4.7 35 383-428 6-40 (321)
145 PRK06475 salicylate hydroxylas 59.2 11 0.00024 38.7 4.0 21 384-404 3-23 (400)
146 PRK07233 hypothetical protein; 58.9 11 0.00024 38.3 3.9 31 385-427 1-31 (434)
147 PRK06753 hypothetical protein; 58.4 13 0.00027 37.4 4.2 20 385-404 2-21 (373)
148 PRK12810 gltD glutamate syntha 58.3 14 0.0003 39.3 4.7 34 382-427 142-175 (471)
149 TIGR02032 GG-red-SF geranylger 58.2 12 0.00027 35.3 3.9 33 385-429 2-34 (295)
150 PRK12779 putative bifunctional 57.9 14 0.0003 43.5 5.0 40 381-432 304-347 (944)
151 PRK12769 putative oxidoreducta 57.8 15 0.00031 41.0 4.9 35 381-427 325-359 (654)
152 TIGR00518 alaDH alanine dehydr 57.5 28 0.00061 36.4 6.7 35 381-427 165-199 (370)
153 PRK12266 glpD glycerol-3-phosp 57.5 12 0.00026 40.4 4.1 34 384-429 7-40 (508)
154 PLN00093 geranylgeranyl diphos 57.5 12 0.00027 39.9 4.1 37 379-427 33-71 (450)
155 PRK07045 putative monooxygenas 57.2 14 0.0003 37.6 4.2 21 384-404 6-26 (388)
156 PRK08410 2-hydroxyacid dehydro 57.0 34 0.00073 35.0 7.0 67 350-428 85-178 (311)
157 PRK14188 bifunctional 5,10-met 56.9 21 0.00046 36.7 5.6 42 363-404 138-180 (296)
158 PRK09564 coenzyme A disulfide 56.9 16 0.00036 37.8 4.8 36 384-429 1-36 (444)
159 PLN02268 probable polyamine ox 56.8 4.5 9.8E-05 41.8 0.8 40 385-429 2-47 (435)
160 PRK06719 precorrin-2 dehydroge 56.1 10 0.00022 35.0 2.9 26 380-405 10-35 (157)
161 KOG0743 AAA+-type ATPase [Post 56.0 18 0.00039 39.6 5.1 104 251-391 241-345 (457)
162 PRK07066 3-hydroxybutyryl-CoA 55.7 15 0.00033 38.0 4.3 31 384-426 8-38 (321)
163 TIGR02992 ectoine_eutC ectoine 55.6 35 0.00077 34.9 6.9 46 369-426 117-162 (326)
164 PRK07608 ubiquinone biosynthes 55.5 14 0.00029 37.3 3.8 32 384-427 6-37 (388)
165 PLN02463 lycopene beta cyclase 55.4 14 0.00029 39.8 4.0 32 384-427 29-60 (447)
166 KOG0069 Glyoxylate/hydroxypyru 55.3 20 0.00044 37.7 5.2 45 361-405 120-184 (336)
167 PRK14851 hypothetical protein; 55.0 12 0.00025 42.7 3.6 40 379-429 39-78 (679)
168 PF01210 NAD_Gly3P_dh_N: NAD-d 54.9 13 0.00028 33.8 3.3 32 385-428 1-32 (157)
169 PRK06130 3-hydroxybutyryl-CoA 54.7 17 0.00036 36.3 4.3 31 384-426 5-35 (311)
170 PRK15469 ghrA bifunctional gly 54.7 35 0.00076 35.0 6.7 45 361-405 98-158 (312)
171 TIGR01984 UbiH 2-polyprenyl-6- 54.4 13 0.00028 37.4 3.5 20 386-405 2-21 (382)
172 PF00056 Ldh_1_N: lactate/mala 54.4 18 0.0004 32.6 4.1 34 384-427 1-35 (141)
173 PRK06436 glycerate dehydrogena 54.3 36 0.00078 34.9 6.7 38 378-427 117-154 (303)
174 PRK08849 2-octaprenyl-3-methyl 54.2 17 0.00037 37.1 4.4 33 383-427 3-35 (384)
175 PF01946 Thi4: Thi4 family; PD 54.2 19 0.00042 36.1 4.6 36 383-430 17-52 (230)
176 PRK10157 putative oxidoreducta 54.1 15 0.00031 38.7 4.0 32 384-427 6-37 (428)
177 PF13450 NAD_binding_8: NAD(P) 53.9 19 0.00041 28.6 3.7 31 388-430 1-31 (68)
178 PRK11749 dihydropyrimidine deh 53.9 18 0.00038 38.3 4.5 35 381-427 138-172 (457)
179 COG0476 ThiF Dinucleotide-util 53.8 12 0.00026 36.6 3.0 39 378-427 25-63 (254)
180 PRK08773 2-octaprenyl-3-methyl 53.7 15 0.00032 37.4 3.8 34 383-428 6-39 (392)
181 COG0111 SerA Phosphoglycerate 53.7 31 0.00067 35.8 6.2 53 362-426 103-173 (324)
182 TIGR02279 PaaC-3OHAcCoADH 3-hy 53.6 16 0.00034 40.0 4.2 34 382-427 4-37 (503)
183 COG2072 TrkA Predicted flavopr 53.5 18 0.00039 38.7 4.6 36 382-428 7-42 (443)
184 PRK11730 fadB multifunctional 53.4 15 0.00032 41.8 4.1 32 384-427 314-345 (715)
185 PRK11101 glpA sn-glycerol-3-ph 53.1 16 0.00035 39.8 4.3 34 383-428 6-39 (546)
186 PRK06223 malate dehydrogenase; 53.1 17 0.00038 36.2 4.1 32 384-426 3-34 (307)
187 PLN02545 3-hydroxybutyryl-CoA 52.9 19 0.00041 35.8 4.3 32 384-427 5-36 (295)
188 PRK11259 solA N-methyltryptoph 52.9 18 0.00039 36.2 4.2 35 383-429 3-37 (376)
189 TIGR01789 lycopene_cycl lycope 52.7 21 0.00045 37.0 4.7 20 386-405 2-21 (370)
190 PF00670 AdoHcyase_NAD: S-aden 52.7 47 0.001 31.6 6.7 42 360-404 3-44 (162)
191 TIGR00292 thiazole biosynthesi 52.7 17 0.00038 36.0 4.0 36 382-429 20-55 (254)
192 PRK08013 oxidoreductase; Provi 52.6 18 0.00038 37.3 4.2 33 383-427 3-35 (400)
193 PRK13369 glycerol-3-phosphate 52.5 16 0.00034 39.3 4.0 33 384-428 7-39 (502)
194 PRK00141 murD UDP-N-acetylmura 52.2 19 0.00042 38.5 4.6 25 380-404 12-36 (473)
195 PRK12778 putative bifunctional 52.2 20 0.00044 40.6 5.0 36 380-427 428-463 (752)
196 TIGR01988 Ubi-OHases Ubiquinon 51.9 16 0.00035 36.4 3.7 31 386-428 2-32 (385)
197 cd05212 NAD_bind_m-THF_DH_Cycl 51.9 51 0.0011 30.3 6.6 52 364-427 9-61 (140)
198 PRK06185 hypothetical protein; 51.8 18 0.00039 36.9 4.1 34 383-428 6-39 (407)
199 PF00743 FMO-like: Flavin-bind 51.8 17 0.00036 40.0 4.1 21 384-404 2-22 (531)
200 TIGR01377 soxA_mon sarcosine o 51.8 18 0.0004 36.2 4.1 34 385-430 2-35 (380)
201 PRK09853 putative selenate red 51.6 18 0.0004 43.1 4.6 35 381-427 537-571 (1019)
202 PRK12831 putative oxidoreducta 51.6 19 0.00042 38.4 4.5 35 381-427 138-172 (464)
203 PRK08020 ubiF 2-octaprenyl-3-m 51.6 16 0.00035 36.9 3.7 33 383-427 5-37 (391)
204 PRK08244 hypothetical protein; 51.3 18 0.0004 38.3 4.2 32 384-427 3-34 (493)
205 PRK07251 pyridine nucleotide-d 51.3 20 0.00043 37.5 4.4 33 384-428 4-36 (438)
206 PRK07588 hypothetical protein; 51.2 19 0.00041 36.6 4.2 20 385-404 2-21 (391)
207 PRK10262 thioredoxin reductase 51.1 16 0.00035 36.2 3.5 24 381-404 4-27 (321)
208 PRK06416 dihydrolipoamide dehy 51.1 18 0.00039 38.0 4.1 33 384-428 5-37 (462)
209 COG0654 UbiH 2-polyprenyl-6-me 50.9 20 0.00043 36.9 4.3 40 383-434 2-43 (387)
210 PRK12770 putative glutamate sy 50.9 25 0.00055 35.6 5.0 36 380-427 15-50 (352)
211 cd05291 HicDH_like L-2-hydroxy 50.9 22 0.00048 35.8 4.5 33 385-427 2-34 (306)
212 PLN02676 polyamine oxidase 50.7 45 0.00098 36.0 7.1 24 382-405 25-48 (487)
213 PRK12814 putative NADPH-depend 50.5 22 0.00047 39.9 4.8 34 382-427 192-225 (652)
214 PRK05714 2-octaprenyl-3-methyl 50.5 16 0.00034 37.4 3.4 31 385-427 4-34 (405)
215 cd05188 MDR Medium chain reduc 50.2 51 0.0011 30.4 6.5 33 370-402 122-154 (271)
216 PRK08243 4-hydroxybenzoate 3-m 50.2 22 0.00047 36.4 4.4 34 383-428 2-35 (392)
217 cd01493 APPBP1_RUB Ubiquitin a 49.8 18 0.0004 38.9 3.9 39 379-428 16-54 (425)
218 PRK06129 3-hydroxyacyl-CoA deh 49.8 21 0.00045 35.9 4.1 32 384-427 3-34 (308)
219 PRK14191 bifunctional 5,10-met 49.7 35 0.00076 35.1 5.7 42 363-404 137-179 (285)
220 PRK08294 phenol 2-monooxygenas 49.6 18 0.00038 40.5 3.9 35 382-427 31-65 (634)
221 PRK08850 2-octaprenyl-6-methox 49.5 21 0.00047 36.6 4.3 33 383-427 4-36 (405)
222 PRK07538 hypothetical protein; 49.3 20 0.00044 36.9 4.1 20 385-404 2-21 (413)
223 PRK13581 D-3-phosphoglycerate 49.2 40 0.00086 37.0 6.5 66 350-427 86-172 (526)
224 TIGR01317 GOGAT_sm_gam glutama 49.2 23 0.00049 38.2 4.5 34 382-427 142-175 (485)
225 PRK07574 formate dehydrogenase 49.2 41 0.00088 35.8 6.3 39 378-428 187-225 (385)
226 PRK08291 ectoine utilization p 49.1 49 0.0011 33.8 6.8 46 369-426 120-165 (330)
227 PRK01747 mnmC bifunctional tRN 49.1 22 0.00047 39.6 4.5 35 384-430 261-295 (662)
228 PF04320 DUF469: Protein with 48.9 15 0.00034 32.5 2.7 32 305-336 27-61 (101)
229 PRK06487 glycerate dehydrogena 48.9 48 0.001 33.9 6.6 66 350-427 88-180 (317)
230 TIGR00031 UDP-GALP_mutase UDP- 48.8 21 0.00046 37.7 4.2 20 385-404 3-22 (377)
231 PRK04690 murD UDP-N-acetylmura 48.7 22 0.00049 38.0 4.4 24 381-404 6-29 (468)
232 PRK07494 2-octaprenyl-6-methox 48.6 22 0.00048 35.9 4.2 34 383-428 7-40 (388)
233 PRK13512 coenzyme A disulfide 48.5 15 0.00033 38.6 3.0 33 385-427 3-35 (438)
234 TIGR03143 AhpF_homolog putativ 48.5 20 0.00044 39.1 4.1 32 385-428 6-37 (555)
235 TIGR03315 Se_ygfK putative sel 48.4 21 0.00045 42.6 4.4 34 382-427 536-569 (1012)
236 PRK04965 NADH:flavorubredoxin 48.4 15 0.00033 37.5 2.9 35 384-428 3-37 (377)
237 cd01490 Ube1_repeat2 Ubiquitin 48.3 22 0.00047 38.6 4.2 39 385-429 1-39 (435)
238 PTZ00117 malate dehydrogenase; 48.3 27 0.00059 35.7 4.7 35 382-427 4-38 (319)
239 TIGR01373 soxB sarcosine oxida 48.2 28 0.00062 35.6 4.9 38 382-429 29-66 (407)
240 PRK10792 bifunctional 5,10-met 48.2 33 0.00073 35.3 5.3 53 363-427 139-192 (285)
241 TIGR01350 lipoamide_DH dihydro 48.1 22 0.00047 37.2 4.1 30 385-426 3-32 (461)
242 COG3380 Predicted NAD/FAD-depe 47.9 21 0.00045 37.3 3.8 32 385-428 3-34 (331)
243 PRK08268 3-hydroxy-acyl-CoA de 47.8 22 0.00048 38.8 4.3 31 384-426 8-38 (507)
244 COG1063 Tdh Threonine dehydrog 47.8 37 0.00081 34.9 5.7 59 357-426 143-201 (350)
245 PLN02568 polyamine oxidase 47.8 12 0.00027 41.0 2.3 24 382-405 4-27 (539)
246 TIGR02053 MerA mercuric reduct 47.7 22 0.00048 37.4 4.1 30 386-427 3-32 (463)
247 PRK11445 putative oxidoreducta 47.5 18 0.00038 36.7 3.2 20 385-404 3-22 (351)
248 PRK07333 2-octaprenyl-6-methox 47.5 19 0.0004 36.5 3.4 20 385-404 3-22 (403)
249 PF12831 FAD_oxidored: FAD dep 47.4 23 0.0005 37.3 4.2 33 386-430 2-34 (428)
250 PRK14694 putative mercuric red 47.3 26 0.00057 37.1 4.6 34 382-427 5-38 (468)
251 KOG2018 Predicted dinucleotide 47.1 22 0.00048 37.8 3.9 40 379-429 70-109 (430)
252 PRK06834 hypothetical protein; 47.1 26 0.00055 37.8 4.5 34 382-427 2-35 (488)
253 cd01339 LDH-like_MDH L-lactate 47.1 20 0.00043 35.9 3.5 31 386-427 1-31 (300)
254 PLN03139 formate dehydrogenase 47.0 50 0.0011 35.2 6.6 39 378-428 194-232 (386)
255 PRK06522 2-dehydropantoate 2-r 47.0 24 0.00052 34.4 4.0 21 385-405 2-22 (304)
256 PF01262 AlaDh_PNT_C: Alanine 47.0 19 0.00041 33.0 3.1 24 381-404 18-41 (168)
257 PRK09897 hypothetical protein; 46.4 25 0.00053 38.9 4.4 34 385-428 3-36 (534)
258 PF12227 DUF3603: Protein of u 46.4 10 0.00022 37.5 1.3 26 236-264 51-76 (214)
259 PRK05868 hypothetical protein; 46.3 25 0.00055 36.0 4.2 21 384-404 2-22 (372)
260 PRK00039 ruvC Holliday junctio 46.3 40 0.00087 31.7 5.2 71 308-396 44-120 (164)
261 PRK02472 murD UDP-N-acetylmura 46.2 29 0.00063 36.2 4.7 24 381-404 3-26 (447)
262 PLN02852 ferredoxin-NADP+ redu 46.1 15 0.00032 40.3 2.6 42 376-427 19-60 (491)
263 PRK08132 FAD-dependent oxidore 46.0 25 0.00054 38.0 4.2 22 383-404 23-44 (547)
264 PRK14189 bifunctional 5,10-met 46.0 35 0.00077 35.1 5.1 43 362-404 137-180 (285)
265 PRK14179 bifunctional 5,10-met 45.9 34 0.00074 35.1 5.0 43 363-405 138-181 (284)
266 COG1252 Ndh NADH dehydrogenase 45.9 21 0.00046 38.3 3.7 36 382-427 2-37 (405)
267 PRK06126 hypothetical protein; 45.9 28 0.0006 37.5 4.6 36 381-428 5-40 (545)
268 PRK05808 3-hydroxybutyryl-CoA 45.6 28 0.0006 34.4 4.2 31 384-426 4-34 (282)
269 PF13407 Peripla_BP_4: Peripla 45.5 71 0.0015 29.8 6.7 144 205-379 52-206 (257)
270 TIGR03364 HpnW_proposed FAD de 45.5 25 0.00055 35.2 4.0 32 385-428 2-33 (365)
271 PRK10015 oxidoreductase; Provi 45.3 24 0.00052 37.3 3.9 33 384-428 6-38 (429)
272 PRK08010 pyridine nucleotide-d 45.2 27 0.00059 36.5 4.3 32 384-427 4-35 (441)
273 COG0665 DadA Glycine/D-amino a 45.1 31 0.00068 34.5 4.6 38 382-431 3-40 (387)
274 PTZ00245 ubiquitin activating 44.9 21 0.00045 36.9 3.2 39 379-428 22-60 (287)
275 PLN02927 antheraxanthin epoxid 44.8 21 0.00046 40.6 3.6 25 380-404 78-102 (668)
276 TIGR02437 FadB fatty oxidation 44.8 24 0.00053 40.2 4.1 32 384-427 314-345 (714)
277 PRK06912 acoL dihydrolipoamide 44.6 27 0.00059 36.9 4.2 31 385-427 2-32 (458)
278 PRK00711 D-amino acid dehydrog 44.4 28 0.00061 35.5 4.2 31 385-427 2-32 (416)
279 PRK12809 putative oxidoreducta 44.4 32 0.00069 38.4 4.9 35 382-428 309-343 (639)
280 COG1250 FadB 3-hydroxyacyl-CoA 44.4 26 0.00055 36.4 3.9 32 384-427 4-35 (307)
281 TIGR02360 pbenz_hydroxyl 4-hyd 44.2 28 0.00061 35.9 4.2 33 384-428 3-35 (390)
282 PRK05976 dihydrolipoamide dehy 44.2 29 0.00063 36.7 4.4 33 383-427 4-36 (472)
283 COG3349 Uncharacterized conser 44.0 17 0.00036 40.1 2.6 44 384-432 1-51 (485)
284 PRK06292 dihydrolipoamide dehy 43.7 31 0.00067 36.1 4.4 33 383-427 3-35 (460)
285 PRK06183 mhpA 3-(3-hydroxyphen 43.7 29 0.00063 37.5 4.3 23 382-404 9-31 (538)
286 cd08231 MDR_TM0436_like Hypoth 43.5 69 0.0015 32.0 6.7 37 366-402 161-197 (361)
287 PF02558 ApbA: Ketopantoate re 43.3 35 0.00076 29.9 4.1 31 386-428 1-31 (151)
288 PLN02172 flavin-containing mon 43.1 30 0.00066 37.2 4.3 25 381-405 202-226 (461)
289 TIGR03736 PRTRC_ThiF PRTRC sys 43.0 37 0.0008 34.0 4.6 45 382-429 10-56 (244)
290 TIGR01318 gltD_gamma_fam gluta 42.9 36 0.00079 36.4 4.9 34 382-427 140-173 (467)
291 PRK06617 2-octaprenyl-6-methox 42.7 27 0.00058 35.6 3.7 31 385-427 3-33 (374)
292 PRK05732 2-octaprenyl-6-methox 42.7 22 0.00048 35.8 3.1 22 383-404 3-24 (395)
293 PRK04308 murD UDP-N-acetylmura 42.5 37 0.0008 35.7 4.8 24 381-404 3-26 (445)
294 PRK07190 hypothetical protein; 42.5 37 0.0008 36.7 4.9 34 383-428 5-38 (487)
295 cd08237 ribitol-5-phosphate_DH 42.4 72 0.0016 32.1 6.7 23 382-404 163-185 (341)
296 PRK14176 bifunctional 5,10-met 42.2 49 0.0011 34.1 5.5 43 362-404 143-186 (287)
297 PRK09424 pntA NAD(P) transhydr 42.2 55 0.0012 36.2 6.2 24 380-403 162-185 (509)
298 TIGR03169 Nterm_to_SelD pyridi 42.1 53 0.0012 33.1 5.7 41 383-429 145-185 (364)
299 PRK11728 hydroxyglutarate oxid 42.0 34 0.00073 35.1 4.3 35 384-428 3-37 (393)
300 KOG3851 Sulfide:quinone oxidor 41.9 19 0.0004 38.6 2.4 26 382-407 38-63 (446)
301 KOG1495 Lactate dehydrogenase 41.7 35 0.00076 35.7 4.3 40 378-427 15-54 (332)
302 cd01833 XynB_like SGNH_hydrola 41.6 1.4E+02 0.003 26.0 7.6 68 251-334 18-85 (157)
303 PRK05249 soluble pyridine nucl 41.5 36 0.00078 35.7 4.5 34 383-428 5-38 (461)
304 PRK11790 D-3-phosphoglycerate 41.4 66 0.0014 34.3 6.5 67 349-427 96-183 (409)
305 PTZ00188 adrenodoxin reductase 41.1 47 0.001 36.9 5.4 41 382-433 38-82 (506)
306 PRK13748 putative mercuric red 41.0 30 0.00065 37.3 4.0 33 383-427 98-130 (561)
307 PRK13984 putative oxidoreducta 40.9 35 0.00075 37.5 4.5 34 382-427 282-315 (604)
308 PRK14619 NAD(P)H-dependent gly 40.8 39 0.00085 33.9 4.5 23 383-405 4-26 (308)
309 PRK07208 hypothetical protein; 40.7 37 0.00079 35.7 4.4 23 382-404 3-25 (479)
310 COG1179 Dinucleotide-utilizing 40.7 26 0.00055 35.9 3.1 42 380-432 27-68 (263)
311 COG0578 GlpA Glycerol-3-phosph 40.5 38 0.00082 37.8 4.6 54 382-447 11-66 (532)
312 PRK11154 fadJ multifunctional 40.2 76 0.0016 36.2 7.1 32 384-426 310-341 (708)
313 TIGR02441 fa_ox_alpha_mit fatt 40.2 32 0.00069 39.5 4.2 31 384-426 336-366 (737)
314 PRK14852 hypothetical protein; 40.1 28 0.0006 41.5 3.7 40 379-429 328-367 (989)
315 PF13241 NAD_binding_7: Putati 40.1 27 0.00059 29.6 2.8 37 380-428 4-40 (103)
316 PRK12775 putative trifunctiona 40.0 35 0.00077 40.5 4.6 34 382-427 429-462 (1006)
317 PRK06567 putative bifunctional 39.9 37 0.00081 40.7 4.7 37 379-427 379-415 (1028)
318 PRK12416 protoporphyrinogen ox 39.7 26 0.00056 36.7 3.1 47 384-430 2-55 (463)
319 TIGR01327 PGDH D-3-phosphoglyc 39.7 68 0.0015 35.2 6.4 66 350-427 84-170 (525)
320 TIGR03219 salicylate_mono sali 39.2 24 0.00051 36.4 2.7 21 385-405 2-22 (414)
321 PLN02985 squalene monooxygenas 39.0 38 0.00082 37.0 4.4 34 382-427 42-75 (514)
322 PRK15409 bifunctional glyoxyla 38.9 80 0.0017 32.6 6.5 26 378-403 140-165 (323)
323 PTZ00318 NADH dehydrogenase-li 38.9 28 0.00061 36.5 3.2 37 380-428 7-43 (424)
324 PLN00106 malate dehydrogenase 38.8 45 0.00098 34.6 4.7 50 368-428 4-54 (323)
325 PRK12391 tryptophan synthase s 38.8 2.1E+02 0.0047 30.9 9.9 42 382-429 254-295 (427)
326 PLN02697 lycopene epsilon cycl 38.7 34 0.00073 37.8 3.9 21 384-404 109-129 (529)
327 PTZ00367 squalene epoxidase; P 38.6 84 0.0018 35.0 7.0 41 375-427 22-65 (567)
328 TIGR01421 gluta_reduc_1 glutat 38.5 40 0.00086 35.8 4.3 32 384-427 3-34 (450)
329 PLN02464 glycerol-3-phosphate 38.4 35 0.00075 38.2 4.0 33 384-428 72-104 (627)
330 PRK08229 2-dehydropantoate 2-r 38.4 40 0.00087 33.8 4.1 32 384-427 3-34 (341)
331 PF13738 Pyr_redox_3: Pyridine 38.3 24 0.00052 32.0 2.3 25 380-404 164-188 (203)
332 cd08239 THR_DH_like L-threonin 38.2 91 0.002 30.8 6.5 34 368-402 150-183 (339)
333 TIGR00561 pntA NAD(P) transhyd 38.0 70 0.0015 35.6 6.2 48 357-404 133-185 (511)
334 KOG1399 Flavin-containing mono 37.8 24 0.00051 38.4 2.5 24 382-405 5-28 (448)
335 PRK02705 murD UDP-N-acetylmura 37.8 39 0.00085 35.5 4.1 20 385-404 2-21 (459)
336 PF03486 HI0933_like: HI0933-l 37.8 36 0.00077 36.4 3.8 31 385-427 2-32 (409)
337 cd05292 LDH_2 A subgroup of L- 37.8 45 0.00098 33.8 4.4 33 385-427 2-34 (308)
338 PRK14618 NAD(P)H-dependent gly 37.8 42 0.00091 33.8 4.2 22 384-405 5-26 (328)
339 TIGR01408 Ube1 ubiquitin-activ 37.6 28 0.0006 41.6 3.2 40 379-429 20-59 (1008)
340 PRK06115 dihydrolipoamide dehy 37.5 45 0.00097 35.5 4.5 32 384-427 4-35 (466)
341 PRK01710 murD UDP-N-acetylmura 37.3 43 0.00094 35.6 4.4 25 380-404 11-35 (458)
342 COG1486 CelF Alpha-galactosida 37.1 37 0.0008 37.1 3.9 39 382-426 2-40 (442)
343 COG0562 Glf UDP-galactopyranos 37.0 39 0.00085 36.0 3.9 34 385-430 3-36 (374)
344 TIGR02818 adh_III_F_hyde S-(hy 37.0 94 0.002 31.6 6.6 23 379-401 182-204 (368)
345 cd08277 liver_alcohol_DH_like 37.0 95 0.002 31.4 6.6 38 378-426 180-217 (365)
346 cd01079 NAD_bind_m-THF_DH NAD 36.8 83 0.0018 31.0 5.9 60 364-435 34-103 (197)
347 PF03446 NAD_binding_2: NAD bi 36.8 53 0.0011 29.9 4.3 31 384-426 2-32 (163)
348 TIGR00137 gid_trmFO tRNA:m(5)U 36.0 41 0.00088 36.5 4.0 32 385-428 2-33 (433)
349 TIGR02733 desat_CrtD C-3',4' d 36.0 49 0.0011 35.1 4.5 23 383-405 1-23 (492)
350 PLN02586 probable cinnamyl alc 35.9 86 0.0019 31.9 6.1 32 371-402 172-203 (360)
351 PRK15488 thiosulfate reductase 35.8 2.4E+02 0.0051 32.1 10.1 116 302-428 114-237 (759)
352 PRK12921 2-dehydropantoate 2-r 35.6 46 0.001 32.6 4.0 21 385-405 2-22 (305)
353 PF00732 GMC_oxred_N: GMC oxid 35.0 25 0.00054 34.2 2.0 35 386-431 3-37 (296)
354 PRK15408 autoinducer 2-binding 35.0 3E+02 0.0065 28.1 9.9 155 205-392 77-242 (336)
355 cd05296 GH4_P_beta_glucosidase 35.0 53 0.0011 35.3 4.6 38 384-427 1-38 (419)
356 PF02254 TrkA_N: TrkA-N domain 34.8 62 0.0013 27.0 4.1 30 386-427 1-30 (116)
357 TIGR02035 D_Ser_am_lyase D-ser 34.7 2E+02 0.0043 31.2 8.8 38 383-429 264-301 (431)
358 TIGR02440 FadJ fatty oxidation 34.6 1.3E+02 0.0028 34.4 7.7 33 384-427 305-337 (699)
359 PRK00094 gpsA NAD(P)H-dependen 34.3 52 0.0011 32.5 4.1 31 385-427 3-33 (325)
360 TIGR01372 soxA sarcosine oxida 34.3 45 0.00096 39.4 4.2 33 383-427 163-195 (985)
361 PRK06116 glutathione reductase 34.3 47 0.001 34.8 4.0 31 385-427 6-36 (450)
362 TIGR01424 gluta_reduc_2 glutat 34.1 47 0.001 35.0 4.0 31 385-427 4-34 (446)
363 PRK07818 dihydrolipoamide dehy 34.1 46 0.00099 35.2 3.9 32 384-427 5-36 (466)
364 PRK06932 glycerate dehydrogena 34.0 1E+02 0.0023 31.5 6.4 25 379-403 143-167 (314)
365 TIGR01989 COQ6 Ubiquinone bios 33.9 40 0.00086 35.4 3.4 34 385-426 2-35 (437)
366 PRK00066 ldh L-lactate dehydro 33.7 62 0.0013 33.2 4.7 34 383-426 6-39 (315)
367 TIGR01202 bchC 2-desacetyl-2-h 33.7 1.3E+02 0.0029 29.8 6.9 21 381-401 143-163 (308)
368 KOG2755 Oxidoreductase [Genera 33.5 23 0.00049 37.0 1.5 36 385-430 1-36 (334)
369 TIGR01832 kduD 2-deoxy-D-gluco 33.4 69 0.0015 29.9 4.6 24 380-403 2-26 (248)
370 cd06419 GH25_muramidase_2 Unch 33.2 75 0.0016 30.4 4.9 44 277-333 91-134 (190)
371 PLN02740 Alcohol dehydrogenase 33.2 87 0.0019 32.0 5.7 35 381-426 197-231 (381)
372 PF00743 FMO-like: Flavin-bind 33.1 36 0.00079 37.5 3.1 26 379-404 179-204 (531)
373 cd08230 glucose_DH Glucose deh 33.0 1.2E+02 0.0027 30.3 6.7 22 381-402 171-192 (355)
374 KOG2013 SMT3/SUMO-activating c 33.0 47 0.001 37.1 3.8 40 379-429 8-47 (603)
375 TIGR02731 phytoene_desat phyto 32.9 52 0.0011 34.4 4.0 20 385-404 1-20 (453)
376 PRK14620 NAD(P)H-dependent gly 32.9 55 0.0012 32.9 4.1 32 385-428 2-33 (326)
377 COG0569 TrkA K+ transport syst 32.7 56 0.0012 31.8 4.0 34 385-430 2-35 (225)
378 PRK07121 hypothetical protein; 32.5 57 0.0012 34.8 4.3 35 383-429 20-54 (492)
379 PRK06467 dihydrolipoamide dehy 32.4 51 0.0011 35.2 4.0 32 384-427 5-36 (471)
380 PTZ00058 glutathione reductase 32.4 52 0.0011 36.5 4.1 34 382-427 47-80 (561)
381 PRK00421 murC UDP-N-acetylmura 32.4 56 0.0012 34.6 4.3 23 382-404 6-29 (461)
382 PRK10309 galactitol-1-phosphat 32.1 1.4E+02 0.003 29.8 6.7 31 371-402 150-180 (347)
383 PRK06370 mercuric reductase; V 32.1 64 0.0014 34.0 4.6 33 383-427 5-37 (463)
384 PRK05472 redox-sensing transcr 31.8 82 0.0018 30.1 4.9 36 367-402 68-103 (213)
385 TIGR03201 dearomat_had 6-hydro 31.6 1.3E+02 0.0028 30.1 6.6 33 370-403 155-187 (349)
386 PRK08274 tricarballylate dehyd 31.6 61 0.0013 34.1 4.3 35 382-428 3-37 (466)
387 PF02056 Glyco_hydro_4: Family 31.6 44 0.00096 32.2 3.0 37 385-427 1-37 (183)
388 TIGR00562 proto_IX_ox protopor 31.5 41 0.00089 34.9 3.0 22 384-405 3-24 (462)
389 PRK02006 murD UDP-N-acetylmura 31.5 61 0.0013 34.8 4.4 24 381-404 5-28 (498)
390 TIGR01813 flavo_cyto_c flavocy 31.4 59 0.0013 33.8 4.2 33 386-430 2-35 (439)
391 PRK01390 murD UDP-N-acetylmura 31.4 62 0.0013 34.2 4.4 24 381-404 7-30 (460)
392 PRK05335 tRNA (uracil-5-)-meth 31.1 57 0.0012 35.6 4.1 34 384-429 3-36 (436)
393 cd02759 MopB_Acetylene-hydrata 31.0 5.7E+02 0.012 27.3 11.5 116 303-430 71-202 (477)
394 cd08256 Zn_ADH2 Alcohol dehydr 30.9 1.6E+02 0.0034 29.4 6.9 42 360-402 153-194 (350)
395 PRK07531 bifunctional 3-hydrox 30.9 59 0.0013 35.3 4.2 31 384-426 5-35 (495)
396 PRK07060 short chain dehydroge 30.9 85 0.0018 29.1 4.7 25 380-404 6-31 (245)
397 PRK07845 flavoprotein disulfid 30.6 62 0.0013 34.4 4.2 33 384-428 2-34 (466)
398 PTZ00431 pyrroline carboxylate 30.6 84 0.0018 30.9 4.9 38 382-427 2-39 (260)
399 PF02882 THF_DHG_CYH_C: Tetrah 30.2 1.4E+02 0.003 28.2 6.0 53 363-427 16-69 (160)
400 PF12242 Eno-Rase_NADH_b: NAD( 30.2 84 0.0018 26.9 4.1 36 369-406 25-61 (78)
401 PRK15076 alpha-galactosidase; 30.2 75 0.0016 34.2 4.8 38 384-427 2-39 (431)
402 cd03371 TPP_PpyrDC Thiamine py 30.1 3.4E+02 0.0075 25.6 8.7 82 315-404 2-88 (188)
403 PRK05479 ketol-acid reductoiso 30.1 67 0.0015 33.6 4.3 25 380-404 14-38 (330)
404 PRK07877 hypothetical protein; 29.9 45 0.00099 38.4 3.3 40 379-429 103-142 (722)
405 COG2072 TrkA Predicted flavopr 29.8 45 0.00097 35.7 3.0 41 379-431 171-211 (443)
406 cd08281 liver_ADH_like1 Zinc-d 29.8 1.5E+02 0.0032 30.2 6.6 20 381-400 190-209 (371)
407 cd02755 MopB_Thiosulfate-R-lik 29.8 3.8E+02 0.0081 28.5 9.9 113 303-428 72-196 (454)
408 COG3159 Uncharacterized protei 29.8 63 0.0014 32.3 3.8 41 136-179 39-79 (218)
409 PRK06057 short chain dehydroge 29.6 1E+02 0.0022 29.1 5.1 36 380-426 4-39 (255)
410 TIGR03846 sulfopy_beta sulfopy 29.6 2.4E+02 0.0052 26.5 7.6 79 315-404 2-81 (181)
411 cd05197 GH4_glycoside_hydrolas 29.4 69 0.0015 34.5 4.3 37 384-427 1-38 (425)
412 PLN02827 Alcohol dehydrogenase 29.4 1.5E+02 0.0032 30.5 6.6 23 380-402 191-213 (378)
413 PTZ00383 malate:quinone oxidor 29.2 73 0.0016 34.9 4.5 36 383-428 45-80 (497)
414 PRK07523 gluconate 5-dehydroge 29.2 93 0.002 29.3 4.8 24 380-403 7-31 (255)
415 PRK05866 short chain dehydroge 29.1 1E+02 0.0022 30.4 5.3 39 378-427 35-73 (293)
416 PLN02576 protoporphyrinogen ox 29.1 50 0.0011 34.8 3.2 22 384-405 13-34 (496)
417 cd08240 6_hydroxyhexanoate_dh_ 29.0 1.5E+02 0.0033 29.3 6.5 45 371-426 164-208 (350)
418 PRK12314 gamma-glutamyl kinase 28.9 2.2E+02 0.0048 28.5 7.6 26 219-244 33-58 (266)
419 PF01183 Glyco_hydro_25: Glyco 28.9 1E+02 0.0022 28.4 4.9 44 276-332 83-126 (181)
420 cd02003 TPP_IolD Thiamine pyro 28.8 5.1E+02 0.011 24.5 9.8 101 315-429 2-105 (205)
421 cd08232 idonate-5-DH L-idonate 28.6 1.4E+02 0.0031 29.2 6.2 29 371-400 155-183 (339)
422 PF00091 Tubulin: Tubulin/FtsZ 28.6 90 0.002 29.9 4.6 29 385-413 1-29 (216)
423 PRK07890 short chain dehydroge 28.6 87 0.0019 29.3 4.4 35 381-426 3-37 (258)
424 PRK14727 putative mercuric red 28.4 78 0.0017 33.8 4.6 33 383-427 16-48 (479)
425 PRK06079 enoyl-(acyl carrier p 28.4 84 0.0018 30.0 4.4 24 380-403 4-30 (252)
426 PLN02661 Putative thiazole syn 28.4 76 0.0016 33.8 4.4 21 383-403 92-112 (357)
427 cd05293 LDH_1 A subgroup of L- 28.2 80 0.0017 32.4 4.4 34 384-427 4-37 (312)
428 cd06412 GH25_CH-type CH-type ( 28.2 1.5E+02 0.0033 28.0 6.0 55 270-333 80-135 (199)
429 PRK05192 tRNA uridine 5-carbox 28.2 65 0.0014 36.6 4.0 21 384-404 5-25 (618)
430 cd01822 Lysophospholipase_L1_l 28.1 1.9E+02 0.0041 25.4 6.3 66 251-332 42-107 (177)
431 TIGR03451 mycoS_dep_FDH mycoth 28.0 1.2E+02 0.0026 30.6 5.6 22 381-402 175-196 (358)
432 cd02757 MopB_Arsenate-R This C 28.0 5.8E+02 0.012 27.9 11.1 116 302-428 76-203 (523)
433 cd05290 LDH_3 A subgroup of L- 27.9 77 0.0017 32.5 4.2 33 385-427 1-33 (307)
434 cd05298 GH4_GlvA_pagL_like Gly 27.8 83 0.0018 34.1 4.6 38 384-428 1-39 (437)
435 cd05297 GH4_alpha_glucosidase_ 27.5 86 0.0019 33.4 4.7 37 385-427 2-38 (423)
436 cd08301 alcohol_DH_plants Plan 27.4 1.6E+02 0.0035 29.7 6.4 22 381-402 186-207 (369)
437 PRK07634 pyrroline-5-carboxyla 27.2 68 0.0015 30.6 3.5 23 382-404 3-25 (245)
438 PRK10083 putative oxidoreducta 27.2 1.8E+02 0.0039 28.6 6.6 24 379-402 157-180 (339)
439 cd08234 threonine_DH_like L-th 27.1 2.1E+02 0.0046 27.9 7.0 22 381-402 158-179 (334)
440 TIGR02734 crtI_fam phytoene de 27.1 64 0.0014 34.3 3.6 20 386-405 1-20 (502)
441 PRK01713 ornithine carbamoyltr 27.1 3.6E+02 0.0078 28.2 9.0 95 322-430 98-193 (334)
442 PRK07231 fabG 3-ketoacyl-(acyl 27.0 1.1E+02 0.0024 28.4 4.7 36 380-427 2-38 (251)
443 PRK07502 cyclohexadienyl dehyd 27.0 86 0.0019 31.4 4.3 34 384-427 7-40 (307)
444 PRK06249 2-dehydropantoate 2-r 26.9 64 0.0014 32.4 3.4 25 381-405 3-27 (313)
445 PRK14183 bifunctional 5,10-met 26.9 1.1E+02 0.0025 31.4 5.2 43 362-404 136-179 (281)
446 COG0093 RplN Ribosomal protein 26.7 48 0.001 30.5 2.2 14 205-218 68-81 (122)
447 cd02002 TPP_BFDC Thiamine pyro 26.6 4.7E+02 0.01 23.7 8.7 102 315-429 4-106 (178)
448 PRK02106 choline dehydrogenase 26.4 52 0.0011 35.9 2.8 20 385-404 7-26 (560)
449 PRK07533 enoyl-(acyl carrier p 26.2 1E+02 0.0023 29.4 4.6 37 379-427 6-45 (258)
450 PTZ00052 thioredoxin reductase 26.2 72 0.0016 34.5 3.8 31 384-426 6-36 (499)
451 PF04820 Trp_halogenase: Trypt 26.1 61 0.0013 34.8 3.3 35 385-428 1-35 (454)
452 cd08255 2-desacetyl-2-hydroxye 26.0 2.4E+02 0.0053 26.7 7.0 25 378-402 93-117 (277)
453 KOG1399 Flavin-containing mono 25.9 61 0.0013 35.3 3.2 29 378-406 181-209 (448)
454 PRK08374 homoserine dehydrogen 25.9 1.4E+02 0.003 31.0 5.6 47 384-434 3-52 (336)
455 PRK03369 murD UDP-N-acetylmura 25.8 93 0.002 33.6 4.6 24 381-404 10-33 (488)
456 TIGR01763 MalateDH_bact malate 25.7 88 0.0019 31.9 4.2 32 384-426 2-33 (305)
457 PRK14991 tetrathionate reducta 25.6 4E+02 0.0086 32.2 10.0 37 384-428 287-328 (1031)
458 TIGR01810 betA choline dehydro 25.4 44 0.00095 36.1 2.1 20 386-405 2-21 (532)
459 PRK12837 3-ketosteroid-delta-1 25.3 79 0.0017 34.2 4.0 34 383-429 7-40 (513)
460 PRK12842 putative succinate de 25.3 89 0.0019 34.4 4.4 36 383-430 9-44 (574)
461 PRK08265 short chain dehydroge 25.3 1.3E+02 0.0029 28.6 5.1 36 380-426 3-38 (261)
462 TIGR02462 pyranose_ox pyranose 25.3 88 0.0019 34.9 4.3 35 385-431 2-36 (544)
463 cd00704 MDH Malate dehydrogena 25.2 99 0.0021 32.0 4.5 39 385-428 2-41 (323)
464 PRK12770 putative glutamate sy 25.2 1.1E+02 0.0024 31.0 4.8 37 381-428 170-206 (352)
465 cd08300 alcohol_DH_class_III c 25.2 1.6E+02 0.0035 29.8 5.9 22 381-402 185-206 (368)
466 KOG1201 Hydroxysteroid 17-beta 25.1 1.1E+02 0.0024 32.0 4.7 56 366-430 21-76 (300)
467 PRK06327 dihydrolipoamide dehy 24.8 80 0.0017 33.6 3.9 31 384-426 5-35 (475)
468 cd08233 butanediol_DH_like (2R 24.7 2E+02 0.0044 28.6 6.5 30 371-401 162-191 (351)
469 PRK11702 hypothetical protein; 24.7 78 0.0017 28.5 3.1 32 305-336 33-68 (108)
470 cd08296 CAD_like Cinnamyl alco 24.7 2.1E+02 0.0045 28.3 6.5 31 371-402 153-183 (333)
471 TIGR02732 zeta_caro_desat caro 24.6 80 0.0017 33.9 3.8 20 385-404 1-20 (474)
472 PF09505 Dimeth_Pyl: Dimethyla 24.5 55 0.0012 35.0 2.5 50 214-264 42-97 (466)
473 PF04007 DUF354: Protein of un 24.4 6.4E+02 0.014 26.5 10.2 101 310-428 12-114 (335)
474 PF00890 FAD_binding_2: FAD bi 24.4 97 0.0021 31.8 4.2 32 386-429 2-33 (417)
475 COG1148 HdrA Heterodisulfide r 24.3 1E+02 0.0023 34.7 4.6 38 383-432 124-161 (622)
476 PLN02178 cinnamyl-alcohol dehy 24.0 1.9E+02 0.004 29.9 6.2 33 370-402 165-198 (375)
477 TIGR03693 ocin_ThiF_like putat 23.9 1.5E+02 0.0032 34.1 5.7 89 315-429 72-164 (637)
478 PLN02976 amine oxidase 23.9 78 0.0017 39.9 3.9 59 346-404 641-714 (1713)
479 PRK14989 nitrite reductase sub 23.9 69 0.0015 37.4 3.4 44 383-434 3-46 (847)
480 PF03702 UPF0075: Uncharacteri 23.8 97 0.0021 32.9 4.2 157 252-429 138-321 (364)
481 PRK12828 short chain dehydroge 23.8 1.3E+02 0.0028 27.5 4.6 24 380-403 4-28 (239)
482 PRK07424 bifunctional sterol d 23.7 91 0.002 33.4 4.0 41 347-402 157-198 (406)
483 TIGR01505 tartro_sem_red 2-hyd 23.7 91 0.002 30.8 3.8 20 385-404 1-20 (291)
484 TIGR03329 Phn_aa_oxid putative 23.7 1E+02 0.0023 32.6 4.4 34 384-427 25-58 (460)
485 PRK06849 hypothetical protein; 23.6 1E+02 0.0022 31.8 4.3 34 383-428 4-38 (389)
486 PF09036 Bcr-Abl_Oligo: Bcr-Ab 23.6 50 0.0011 28.1 1.6 36 136-171 27-66 (79)
487 TIGR00465 ilvC ketol-acid redu 23.5 77 0.0017 32.7 3.3 25 381-405 1-25 (314)
488 cd08265 Zn_ADH3 Alcohol dehydr 23.2 3.1E+02 0.0068 28.0 7.6 23 380-402 201-223 (384)
489 PRK06935 2-deoxy-D-gluconate 3 23.2 1.5E+02 0.0033 28.0 5.0 29 380-412 12-40 (258)
490 PLN02529 lysine-specific histo 23.2 98 0.0021 35.9 4.3 23 382-404 159-181 (738)
491 PRK03803 murD UDP-N-acetylmura 23.1 1E+02 0.0022 32.4 4.3 23 382-404 5-27 (448)
492 PRK07576 short chain dehydroge 23.1 1.3E+02 0.0029 28.7 4.7 36 379-426 5-41 (264)
493 COG5095 TAF6 Transcription ini 23.0 15 0.00032 38.9 -1.9 127 124-269 223-376 (450)
494 PRK10262 thioredoxin reductase 23.0 1.3E+02 0.0028 29.9 4.6 23 382-404 145-167 (321)
495 PLN02602 lactate dehydrogenase 22.9 1.1E+02 0.0023 32.2 4.3 33 384-426 38-70 (350)
496 cd08242 MDR_like Medium chain 22.9 1.8E+02 0.0038 28.4 5.5 36 366-402 140-175 (319)
497 PRK05708 2-dehydropantoate 2-r 22.9 1E+02 0.0022 31.2 3.9 21 384-404 3-23 (305)
498 PRK13403 ketol-acid reductoiso 22.8 1.1E+02 0.0024 32.5 4.2 27 379-405 12-38 (335)
499 PRK07984 enoyl-(acyl carrier p 22.8 1.2E+02 0.0027 29.4 4.4 35 381-427 4-41 (262)
500 PRK12939 short chain dehydroge 22.8 1.5E+02 0.0032 27.5 4.8 25 380-404 4-29 (250)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.5e-154 Score=1196.52 Aligned_cols=379 Identities=62% Similarity=1.020 Sum_probs=366.1
Q ss_pred ccCCCCccCCCCCccc-ccccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhH
Q 012532 82 VYGEDTATEDQPVTPW-SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQK 160 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~K 160 (461)
.++++..+..+...+| ..++.+|+++|+||++|||+|||.+||++|+|||||||.|+|+|+|++||+.+|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k 87 (582)
T KOG1257|consen 8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK 87 (582)
T ss_pred cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence 3344444444444455 667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHhhhChhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEe
Q 012532 161 YMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVT 240 (461)
Q Consensus 161 y~~L~~L~~rNe~LFY~ll~~~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVT 240 (461)
|+||++||+|||+|||++|++|++|+||||||||||+|||+||+|||+|+||||||+|+|||.++|+|||.++|++||||
T Consensus 88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT 167 (582)
T KOG1257|consen 88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT 167 (582)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeccCCCCCCccccchhhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHH
Q 012532 241 DGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTA 320 (461)
Q Consensus 241 DGerILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~a 320 (461)
||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+|
T Consensus 168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A 247 (582)
T KOG1257|consen 168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA 247 (582)
T ss_pred CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 012532 321 VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE 400 (461)
Q Consensus 321 v~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~ 400 (461)
|+++|||+++||||||+++|||++|+|||++||||||||||||||+|||||+|+|++|++|+|++|||+|||+||+|||+
T Consensus 248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~ 327 (582)
T KOG1257|consen 248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN 327 (582)
T ss_pred HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCcCCchhchhcccccCCCCCHHHHhcC
Q 012532 401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV 461 (461)
Q Consensus 401 li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (461)
||+++|+++ |+|+|||++||||||++||||++|+.+++++|++|||+++|+++|+|||+.
T Consensus 328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~ 387 (582)
T KOG1257|consen 328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKE 387 (582)
T ss_pred HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHh
Confidence 999999996 999999999999999999999999878999999999999999999999974
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-144 Score=1143.64 Aligned_cols=360 Identities=49% Similarity=0.856 Sum_probs=352.5
Q ss_pred cccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhHHHH
Q 012532 99 VSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKL 178 (461)
Q Consensus 99 ~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~l 178 (461)
.+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||++
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhChhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCCcccc
Q 012532 179 LIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGI 258 (461)
Q Consensus 179 l~~~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~GmgI 258 (461)
|++|+|||||||||||||+|||+||++||+|+|||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCC
Q 012532 259 PVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFAN 338 (461)
Q Consensus 259 ~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~ 338 (461)
|+||++|||+||||||++|||||||||||||+||+||+|+|+||||++|++||+|+||||+||+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhc
Q 012532 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (461)
Q Consensus 339 ~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr 418 (461)
+|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 599999999
Q ss_pred CcEEEEcCCCccccCCCcCCchhchhcccccCCC---------CCHHHHhcC
Q 012532 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---------KELVDAVNV 461 (461)
Q Consensus 419 ~~i~lvDs~GLi~~~R~~~l~~~k~~fA~~~~~~---------~~L~eaV~~ 461 (461)
++|||||++|||+++|.+ |+++|++|||+.++. .+|+|||+.
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~ 380 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRN 380 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhc
Confidence 999999999999999975 999999999986653 689999974
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.3e-144 Score=1143.07 Aligned_cols=361 Identities=71% Similarity=1.164 Sum_probs=355.8
Q ss_pred cccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhHHHHhh
Q 012532 101 VASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLI 180 (461)
Q Consensus 101 ~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll~ 180 (461)
..+|+++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||++||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCCccccch
Q 012532 181 DNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPV 260 (461)
Q Consensus 181 ~~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~GmgI~i 260 (461)
+|++||||||||||||+||++||++||+|+|||||++|+|+|+++++|||.++|++||||||||||||||+|++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCcc
Q 012532 261 GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHN 340 (461)
Q Consensus 261 GKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~n 340 (461)
||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCc
Q 012532 341 AFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (461)
Q Consensus 341 Af~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~ 420 (461)
||++|+|||+++|||||||||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEcCCCccccCCCcCCchhchhcccccCCCCCHHHHhcC
Q 012532 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV 461 (461)
Q Consensus 421 i~lvDs~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (461)
|||||++|||+++|.++|+++|++||++.++..+|+|||+.
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 399 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKA 399 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhc
Confidence 99999999999999766999999999998888999999974
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=5.1e-144 Score=1137.78 Aligned_cols=362 Identities=49% Similarity=0.831 Sum_probs=353.6
Q ss_pred ccccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhHHH
Q 012532 98 SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYK 177 (461)
Q Consensus 98 ~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ 177 (461)
..+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||+
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhChhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCCccc
Q 012532 178 LLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMG 257 (461)
Q Consensus 178 ll~~~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~Gmg 257 (461)
+|++|+|||||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++||||||||||||||+|++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCC
Q 012532 258 IPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 337 (461)
Q Consensus 258 I~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~ 337 (461)
||+||++|||+||||||++|||||||||||||+||+||+||||||+|++|++||+|+||||+||+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhh
Q 012532 338 NHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417 (461)
Q Consensus 338 ~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeA 417 (461)
++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCcEEEEcCCCccccCCCcCCchhchhccccc--CC---CCCHHHHhcC
Q 012532 418 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EP---VKELVDAVNV 461 (461)
Q Consensus 418 r~~i~lvDs~GLi~~~R~~~l~~~k~~fA~~~--~~---~~~L~eaV~~ 461 (461)
+++|||||++|||+++|.++|+++|++|||+. ++ ..+|+|||+.
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~ 379 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRF 379 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhc
Confidence 99999999999999999766999999999974 33 5799999974
No 5
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=4.8e-86 Score=616.86 Aligned_cols=182 Identities=63% Similarity=1.184 Sum_probs=164.2
Q ss_pred HhhhhhhHHHHhhhChhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeec
Q 012532 168 QERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILG 247 (461)
Q Consensus 168 ~~rNe~LFY~ll~~~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILG 247 (461)
|++||+|||+++.+|++|+||||||||||+||++||++|++|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccchhhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCC
Q 012532 248 LGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGE 327 (461)
Q Consensus 248 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp 327 (461)
|||+|++|||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEeeCCCccHHHHHHHHc
Q 012532 328 RILIQFEDFANHNAFDLLEKYG 349 (461)
Q Consensus 328 ~~lIqfEDF~~~nAf~lL~rYr 349 (461)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 6
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1e-70 Score=563.90 Aligned_cols=258 Identities=35% Similarity=0.525 Sum_probs=228.0
Q ss_pred cccHHHHHHHHHHHhhcCCC-chhHHHHHHHHHhhhhhhHHHHhhhChhccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 012532 137 VISQELQVKKMLHNIRQYQV-PLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFIS 215 (461)
Q Consensus 137 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~rNe~LFY~ll~~~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis 215 (461)
++|+| |.+|++.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++|++.++.++ +
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----~ 71 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----S 71 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh----h
Confidence 57889 99999999999888 99999999 899999999999999999999999999999999999888876 2
Q ss_pred ccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCC-CCccccchhhhhhHhhhcCCCCCCeeeEEeecCCCccccccC
Q 012532 216 LKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294 (461)
Q Consensus 216 ~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~D 294 (461)
++.+++.|+|||||||||||||+| ..||+||+||++|||+||||| +|||+||+|||||
T Consensus 72 -------------yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 72 -------------YTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred -------------cCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 455666999999999999999999 679999999999999999999 9999999999987
Q ss_pred cccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHH
Q 012532 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAM 374 (461)
Q Consensus 295 plYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAl 374 (461)
+++||+++.++||. ..+|||||..-|+.+.+.|||.+||||||||||||+|+||||+||+
T Consensus 131 -------------------i~~~Vkal~p~Fgg-inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnal 190 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG-INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNAL 190 (432)
T ss_pred -------------------HHHHHHHhhhcCCC-cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHH
Confidence 89999999999955 4444444444444445667778999999999999999999999999
Q ss_pred HHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCc-CCchhchhccc-ccCCC
Q 012532 375 KFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAH-EHEPV 452 (461)
Q Consensus 375 rv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~-~l~~~k~~fA~-~~~~~ 452 (461)
|++|++|+|+||||+|||+||+|||+||+.++++ +++|||||++|+|+++|.+ .++++|..+|. +....
T Consensus 191 k~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~ 261 (432)
T COG0281 191 KLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER 261 (432)
T ss_pred HHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhccc
Confidence 9999999999999999999999999999988554 2799999999999999975 36777777774 43333
Q ss_pred C
Q 012532 453 K 453 (461)
Q Consensus 453 ~ 453 (461)
.
T Consensus 262 ~ 262 (432)
T COG0281 262 T 262 (432)
T ss_pred c
Confidence 3
No 7
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=3.8e-66 Score=564.02 Aligned_cols=221 Identities=29% Similarity=0.546 Sum_probs=202.2
Q ss_pred hccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCCc-cccchhh
Q 012532 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (461)
Q Consensus 184 ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~G-mgI~iGK 262 (461)
.+.|+++|||||+++|++ |+++|+++| ++.+|| +.|+|||||+|||||||+|++| ||||+||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~-~~t~r~-------------n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF-RFTSRG-------------NLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh-hhhccC-------------cEEEEEecchhhccCCCcCcccccchHHHH
Confidence 566999999999999999 899999985 455544 4699999999999999999997 9999999
Q ss_pred hhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHH
Q 012532 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF 342 (461)
Q Consensus 263 l~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf 342 (461)
++|||+||||| ++|+|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 56666766 688 8889 999999999977 999999999999
Q ss_pred HHHHHHcC--CCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCc
Q 012532 343 DLLEKYGT--THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (461)
Q Consensus 343 ~lL~rYr~--~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~ 420 (461)
++|+|||+ +||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||++|+. .|+++| +
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999965 399854 9
Q ss_pred EEEEcCCCccccCCCcCCchhchhcccccCCCCCHHHHhcC
Q 012532 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV 461 (461)
Q Consensus 421 i~lvDs~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (461)
|||||++|||+++|.+.|+++|++||++. +..+|+|||+.
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~ 257 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG 257 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc
Confidence 99999999999999766999999999986 45799999973
No 8
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1.3e-64 Score=553.65 Aligned_cols=220 Identities=25% Similarity=0.454 Sum_probs=200.3
Q ss_pred hccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCCc-cccchhh
Q 012532 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (461)
Q Consensus 184 ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~G-mgI~iGK 262 (461)
.+.|+++|||||+++|++ |+++|+++|- |+.+.+.++|||||||||||||+|++| ||||+||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~~--------------~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAAR--------------YTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhhh--------------cccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 566999999999999999 7899998883 566667899999999999999999997 9999999
Q ss_pred hhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCC-eeeEEeeCCCccH
Q 012532 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER-ILIQFEDFANHNA 341 (461)
Q Consensus 263 l~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~-~lIqfEDF~~~nA 341 (461)
++|||+||||| ++| +||||+ || ||||++|+..| |+ ..||||||+++||
T Consensus 101 ~~l~~~~~gi~---~~~----i~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFD----IELDES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---ccc----cccCCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 555 555565 66 88889999888 87 7899999999999
Q ss_pred HHHHHHHcCC--CceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcC
Q 012532 342 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (461)
Q Consensus 342 f~lL~rYr~~--~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~ 419 (461)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999987 89999999999999999999999999999999999999999999999999976 38874 7
Q ss_pred cEEEEcCCCccccCCCcCCchhchhcccccCCCCCHHHHhcC
Q 012532 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV 461 (461)
Q Consensus 420 ~i~lvDs~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (461)
+|||||++|||+++|.+.|+++|++||++. +..+|+|||+.
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~ 261 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG 261 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC
Confidence 999999999999999766999999999986 45799999973
No 9
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=1.6e-64 Score=551.14 Aligned_cols=220 Identities=28% Similarity=0.507 Sum_probs=201.2
Q ss_pred hccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCC-ccccchhh
Q 012532 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCH-GMGIPVGK 262 (461)
Q Consensus 184 ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~-GmgI~iGK 262 (461)
.+.|+++|||||+++|++ |+++|+++| ++.+||+ .|+|||||+|||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~n-------------~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARGN-------------LVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCCc-------------EEEEEccchhhccccccccccCccHHHHH
Confidence 566999999999999996 899999999 7777665 59999999999999999999 89999999
Q ss_pred hhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCe-eeEEeeCCCccH
Q 012532 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI-LIQFEDFANHNA 341 (461)
Q Consensus 263 l~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~-lIqfEDF~~~nA 341 (461)
++|||+||||| + +|+||||+ | +||||++|+..| |.. .||||||++|||
T Consensus 93 ~~l~~~~~gid---~----~~i~~~~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---V----FDIEVDEE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---c----cccccCCC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 5 55555665 2 799999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcC
Q 012532 342 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (461)
Q Consensus 342 f~lL~rYr~~--~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~ 419 (461)
|++|+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999976 3887 78
Q ss_pred cEEEEcCCCccccCCCcCCchhchhcccccCCCCCHHHHhcC
Q 012532 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV 461 (461)
Q Consensus 420 ~i~lvDs~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (461)
+|||||++|||+++|.++|+++|++||++ .+..+|+|||+.
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~ 253 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG 253 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC
Confidence 99999999999999966699999999998 445799999973
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=99.96 E-value=2.9e-30 Score=252.91 Aligned_cols=101 Identities=50% Similarity=0.844 Sum_probs=92.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCcCC
Q 012532 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (461)
Q Consensus 359 IQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~l 438 (461)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+||||+||||||++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999985 9999999999999999999999995 59
Q ss_pred chhchhcccccCCCC---CHHHHhcC
Q 012532 439 QHFKKPWAHEHEPVK---ELVDAVNV 461 (461)
Q Consensus 439 ~~~k~~fA~~~~~~~---~L~eaV~~ 461 (461)
+++|++|||++++.. +|+|||+.
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~ 104 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKG 104 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHC
T ss_pred ChhhhhhhccCcccccccCHHHHHHh
Confidence 999999999887764 99999974
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=99.96 E-value=3.6e-29 Score=245.05 Aligned_cols=100 Identities=42% Similarity=0.601 Sum_probs=95.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCcCC
Q 012532 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (461)
Q Consensus 359 IQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~l 438 (461)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+||||++||+||++|||+++|.+ +
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999988 499999999999999999999999965 8
Q ss_pred chhchh---cccccCCCCCHHHHhc
Q 012532 439 QHFKKP---WAHEHEPVKELVDAVN 460 (461)
Q Consensus 439 ~~~k~~---fA~~~~~~~~L~eaV~ 460 (461)
+++|++ |+++.++..+|+|||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~ 103 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVE 103 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHH
Confidence 999999 9998888899999997
No 12
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=99.96 E-value=5.1e-29 Score=246.79 Aligned_cols=100 Identities=54% Similarity=0.877 Sum_probs=95.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCcCC
Q 012532 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (461)
Q Consensus 359 IQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~l 438 (461)
|||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++|||||++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchhcccccC--CCCCHHHHhc
Q 012532 439 QHFKKPWAHEHE--PVKELVDAVN 460 (461)
Q Consensus 439 ~~~k~~fA~~~~--~~~~L~eaV~ 460 (461)
+++|++||++.+ +..+|+|+|+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~ 102 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVK 102 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHH
Confidence 999999999876 6789999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.70 E-value=2.9e-17 Score=157.66 Aligned_cols=93 Identities=37% Similarity=0.527 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCcCC
Q 012532 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (461)
Q Consensus 359 IQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~l 438 (461)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|... |++ +++||++|++||++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~-----G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAA-----GAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHc-----CcC----cceEEEEeCCCccccccchhh
Confidence 69999999999999999999999999999999999999999999643 876 679999999999999997669
Q ss_pred chhchhccccc--CCC-CCHHHHhc
Q 012532 439 QHFKKPWAHEH--EPV-KELVDAVN 460 (461)
Q Consensus 439 ~~~k~~fA~~~--~~~-~~L~eaV~ 460 (461)
.++|++||++. .+. .+|.|+++
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~ 96 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALK 96 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHh
Confidence 99999999864 223 37777764
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.29 E-value=0.001 Score=54.77 Aligned_cols=62 Identities=40% Similarity=0.479 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccC
Q 012532 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS 433 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~ 433 (461)
+||+++++++..+.+..+.+++..+++|+|+|.+|.+++..+... | -++++++|++=+|+..
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~rdi~i~~~ 62 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDRDILVTAT 62 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcCCEEEEcC
Confidence 689999999999999999999999999999999999999998654 2 2479999995555443
No 15
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.41 E-value=0.19 Score=54.17 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=93.6
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccH--HHHHHHHcCC----Ccee----------ccCcchHHHHHHH
Q 012532 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNA--FDLLEKYGTT----HLVF----------NDDIQGTASVVLA 368 (461)
Q Consensus 305 ~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nA--f~lL~rYr~~----~~~F----------NDDIQGTaaV~LA 368 (461)
.+-.|...|.-.||..+.+.+||+.-|--+|++..-. --+.+.|+.. .-+| .+--.-||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 4667788999999999999999998888888876322 1266677531 1233 2233458877888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCcCCchhc
Q 012532 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 442 (461)
Q Consensus 369 gllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~l~~~k 442 (461)
++-.+++..|.+|+++|++|.|.|..|...|+.|.+. |. +=+-+-|++|-|.... .++..+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~ 274 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREK 274 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHH
Confidence 8889999999999999999999999999999998653 63 2345689999887653 355433
No 16
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.27 E-value=0.16 Score=54.25 Aligned_cols=102 Identities=17% Similarity=0.251 Sum_probs=70.2
Q ss_pred ccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHHH---------------------HHHHc-------CCCcee
Q 012532 304 RAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDL---------------------LEKYG-------TTHLVF 355 (461)
Q Consensus 304 R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~l---------------------L~rYr-------~~~~~F 355 (461)
..+-++|+..+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 346688888877775 345576665 5555444433 13443 369999
Q ss_pred c----------cCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEc
Q 012532 356 N----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 425 (461)
Q Consensus 356 N----------DDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvD 425 (461)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 6668888777666654 346678999999999999999999888532 53 477776
Q ss_pred CC
Q 012532 426 SK 427 (461)
Q Consensus 426 s~ 427 (461)
.+
T Consensus 243 ~d 244 (425)
T PRK05476 243 VD 244 (425)
T ss_pred CC
Confidence 53
No 17
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.71 E-value=0.4 Score=51.67 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=89.0
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHH---HHHHHcCC---C-------cee----ccCcchHHHHHH
Q 012532 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGTT---H-------LVF----NDDIQGTASVVL 367 (461)
Q Consensus 305 ~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~---lL~rYr~~---~-------~~F----NDDIQGTaaV~L 367 (461)
.+..|-..|...|+.++.+.+||..=|-=+|++. +... +.+.|+.- . ++- .+--..||-=+.
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 4566888899999999999999988788888874 3332 66777632 1 111 122345777778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEE-cCCCccccCC
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSR 434 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lv-Ds~GLi~~~R 434 (461)
.++..|++..+.+|++.||+|.|-|..|...|++|.. .|. +|.-+ |++|-|+...
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~ 272 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE 272 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC
Confidence 8888899999999999999999999999999999953 253 46655 9999998865
No 18
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.65 E-value=0.12 Score=53.68 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 362 TaaV~LAgllaAlrv~g~~L~d~rivf~GA-GsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
|+++..+++--|.+..|..|++.+++|.|| |+.|--+|++|... .|. +++++++++
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~ 190 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ 190 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC
Confidence 688888899999999999999999999999 89999999999642 232 468888763
No 19
>PLN02477 glutamate dehydrogenase
Probab=94.42 E-value=0.56 Score=50.03 Aligned_cols=117 Identities=22% Similarity=0.260 Sum_probs=87.7
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHH---HHHHHcC----CCcee----------ccCcchHHHHHH
Q 012532 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT----THLVF----------NDDIQGTASVVL 367 (461)
Q Consensus 305 ~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~---lL~rYr~----~~~~F----------NDDIQGTaaV~L 367 (461)
.+..|-..|...|+.++.+.-||..=|-=+|++.. ... +.+.|+. .-.|+ .+--.-||-=+.
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~-~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~ 190 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTN-AQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVV 190 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC-HHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHH
Confidence 45678888999999999999999655566677653 222 5567753 11111 122234777778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEE-EEcCCCccccCC
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSR 434 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~-lvDs~GLi~~~R 434 (461)
.++-.|++..|.+|++.||+|.|.|..|.+.|++|.+. |. +|. +.|++|-|+...
T Consensus 191 ~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~ 246 (410)
T PLN02477 191 FATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN 246 (410)
T ss_pred HHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC
Confidence 88888999999999999999999999999999988543 63 466 899999998865
No 20
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.41 E-value=0.51 Score=51.08 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=91.8
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHH---HHHHHcC---CC-ceecc---C-------cchHHHHHH
Q 012532 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT---TH-LVFND---D-------IQGTASVVL 367 (461)
Q Consensus 305 ~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~---lL~rYr~---~~-~~FND---D-------IQGTaaV~L 367 (461)
.+..|-..|...||..+.+..||+.=|-=.|++. ++.+ +.+.|+. .. .++-. + -.-||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4566778999999999999999999999999984 3333 4555642 11 22111 1 123777778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEE-EEcCCCccccCCCcCCch
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQH 440 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~-lvDs~GLi~~~R~~~l~~ 440 (461)
.++-.+++..+.+|++.|++|-|.|..|...|+.+.+. |. +++ +.|++|-|+... .++.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~ 281 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTK 281 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCH
Confidence 88889999999999999999999999999999998653 63 455 999999998865 3544
No 21
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.90 E-value=0.21 Score=46.35 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHH
Q 012532 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIAL 404 (461)
Q Consensus 362 TaaV~LAgllaAlrv~g~~L~d~rivf~GA-GsAgiGIA~li~~ 404 (461)
||+.+++.+..+++..|..+++.+++++|| |..|..+|+.+..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~ 50 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR 50 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 778888888888888899999999999997 9999888887754
No 22
>PRK14030 glutamate dehydrogenase; Provisional
Probab=93.59 E-value=1.1 Score=48.52 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=91.5
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHH---HHHHHcC----CCceecc---Cc-------chHHHHHH
Q 012532 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT----THLVFND---DI-------QGTASVVL 367 (461)
Q Consensus 305 ~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~---lL~rYr~----~~~~FND---DI-------QGTaaV~L 367 (461)
.+..|-..|.-.||..+.+..||+.=|-=.|++. ++.. +++.|+. ...++.- .. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4566888999999999998889988777778874 3333 5667754 2222211 11 23888788
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCcCCchh
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~l~~~ 441 (461)
.++..+++..|.+|++.||+|-|.|..|...|+.|.++ |. +=+-+-|++|-|+... .++..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~ 273 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGE 273 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHH
Confidence 88889999999999999999999999999999998543 64 3467789999988854 35443
No 23
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.47 E-value=0.18 Score=50.55 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=42.0
Q ss_pred CceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 352 HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 352 ~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
..=||-|- .|++.+++..+..++.++++++|||.||..||..+... |+ ++|+++|+.
T Consensus 104 l~G~NTD~--------~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~ 160 (284)
T PRK12549 104 RIGHNTDW--------SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD 160 (284)
T ss_pred EEEEcCCH--------HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 44456664 45667777655678889999999999999999888643 64 358888873
No 24
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.32 E-value=0.31 Score=49.18 Aligned_cols=57 Identities=32% Similarity=0.405 Sum_probs=41.8
Q ss_pred CceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 352 HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 352 ~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+.=||-|. .|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 101 l~G~NTD~--------~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 101 LRGYNTDG--------TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34466664 4567778777888999999999999998877766543 365 468888874
No 25
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.20 E-value=0.96 Score=48.24 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=41.5
Q ss_pred CCceec----------cCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHH
Q 012532 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403 (461)
Q Consensus 351 ~~~~FN----------DDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~ 403 (461)
.+|+|+ |.-.||+--++-+++ |.++..+...+++|+|+|..|.++|..+.
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak 215 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRAR 215 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHh
Confidence 789987 667899877666655 45677899999999999999999998775
No 26
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.19 E-value=0.41 Score=47.95 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=40.3
Q ss_pred CCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 351 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 351 ~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..=+|-| ..|++.+++..+..++++++|++|||-||.+||..+. + .|. ++|.++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La----~-~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCA----L-DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHH----H-CCC------CEEEEEeCC
Confidence 45567777 3457778877777888999999999866666655553 3 364 357777763
No 27
>PRK08328 hypothetical protein; Provisional
Probab=91.87 E-value=0.1 Score=50.72 Aligned_cols=54 Identities=24% Similarity=0.465 Sum_probs=41.9
Q ss_pred HHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEE
Q 012532 345 LEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 424 (461)
Q Consensus 345 L~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lv 424 (461)
++||..++..|..+. -.+|++.+|+++|+|..|..||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877666665422 2467889999999999999999999765 75 589999
Q ss_pred cCC
Q 012532 425 DSK 427 (461)
Q Consensus 425 Ds~ 427 (461)
|.+
T Consensus 58 D~D 60 (231)
T PRK08328 58 DEQ 60 (231)
T ss_pred cCC
Confidence 964
No 28
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.79 E-value=0.51 Score=41.50 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.|+.+|++..+.++++.+++|+|+|..|..+|+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~ 40 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAE 40 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence 5889999998888999999999999888888887753
No 29
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=91.74 E-value=0.39 Score=48.02 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=41.0
Q ss_pred CCceeccCcchHHHHHHHHHHHHHHHhCC--CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 351 THLVFNDDIQGTASVVLAGLISAMKFLGG--SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 351 ~~~~FNDDIQGTaaV~LAgllaAlrv~g~--~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
+..=+|-|.. |++.+++-.+. ++++.+++++|||.||-+|+..+... |. ++|+++++
T Consensus 99 ~l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-----G~------~~i~I~nR 157 (282)
T TIGR01809 99 IWKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-----GV------TDITVINR 157 (282)
T ss_pred cEEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEEeC
Confidence 3555788854 45666666563 68899999999999998888777542 64 45777765
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.74 E-value=0.31 Score=43.39 Aligned_cols=37 Identities=35% Similarity=0.544 Sum_probs=30.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.++++.+++++|||.+|-+++..+... |. ++|+++++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nR 44 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNR 44 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEES
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEEC
Confidence 389999999999999999988887543 64 57999987
No 31
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.41 E-value=0.43 Score=48.12 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=41.1
Q ss_pred CCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 351 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 351 ~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
+.+=||-|-. |++.+++..+..+++.+++++|||-|+-+|+-.+.+. |. ++|+++|+
T Consensus 103 ~l~G~NTD~~--------Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR 159 (283)
T PRK14027 103 HTTGHNTDVS--------GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTH-----GV------QKLQVADL 159 (283)
T ss_pred cEEEEcCCHH--------HHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcC
Confidence 3455677743 4667776544568889999999999999998877542 54 46777776
No 32
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.39 E-value=1.2 Score=47.69 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=42.7
Q ss_pred CCceec----------cCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 351 ~~~~FN----------DDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.+|+|+ |.-.||+--++-+++. .++..+.+.+++|+|+|..|.++|..+..
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~ 223 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRG 223 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 788885 6678999888877765 66778999999999999999999987753
No 33
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.09 E-value=0.65 Score=46.95 Aligned_cols=72 Identities=25% Similarity=0.360 Sum_probs=50.6
Q ss_pred ccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhc
Q 012532 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (461)
Q Consensus 339 ~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr 418 (461)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|.+..+. +.+.+|+|+|+|..|..+|+.+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----GV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----CC------
Confidence 46777777777655444 23456666666666655554 8999999999999999998888542 32
Q ss_pred CcEEEEcC
Q 012532 419 KKIWLVDS 426 (461)
Q Consensus 419 ~~i~lvDs 426 (461)
++|+++|+
T Consensus 203 ~~V~v~~r 210 (311)
T cd05213 203 AEITIANR 210 (311)
T ss_pred CEEEEEeC
Confidence 46888876
No 34
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.80 E-value=0.72 Score=46.50 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 359 IQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+.+++=.++..+++..+..|.+.+++|+|+|.+|..+|+.+... |. +++++|++
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~ 183 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARS 183 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 34555666667777888888899999999999999999999998642 53 47777764
No 35
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.75 E-value=0.61 Score=46.28 Aligned_cols=58 Identities=28% Similarity=0.351 Sum_probs=40.0
Q ss_pred CCceeccCcchHHHHHHHHHHHHHHH-hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 351 THLVFNDDIQGTASVVLAGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 351 ~~~~FNDDIQGTaaV~LAgllaAlrv-~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..-+|-|- .|++++++. .+..+++.+++++|||.+|-+|+..+.. .|+ .+|+++++.
T Consensus 98 ~l~G~NTD~--------~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 98 RLIGDNTDG--------IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred EEEEEcccH--------HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 344556553 345666664 5678999999999999888888887763 253 356766663
No 36
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.14 E-value=1 Score=43.90 Aligned_cols=61 Identities=33% Similarity=0.412 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccC
Q 012532 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS 433 (461)
Q Consensus 362 TaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~ 433 (461)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +.+-+.|++|-|+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~ 62 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP 62 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC
Confidence 44445667778888889999999999999999999999999653 43 468889999977665
No 37
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.22 E-value=0.88 Score=46.32 Aligned_cols=47 Identities=34% Similarity=0.521 Sum_probs=37.2
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 369 GLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 369 gllaAlrv~g--~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
|+..+|+-.+ ...+++++|++|||-|+.+|+-.+.++ |. ++|+++++
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 4667777655 456689999999999999998887654 64 57998887
No 38
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.92 E-value=0.68 Score=40.71 Aligned_cols=37 Identities=35% Similarity=0.540 Sum_probs=31.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 378999999999999999999876 76 68999997644
No 39
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=88.44 E-value=1.8 Score=43.52 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEE-EEcCCCccccCC
Q 012532 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSR 434 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~-lvDs~GLi~~~R 434 (461)
-||-=+..++-.+++..+.+|++.||+|.|-|..|.+.|++|.+. |. +++ +.|++|-|+...
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~ 78 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD 78 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC
Confidence 366666778888888899999999999999999999999998652 63 455 999999998865
No 40
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.94 E-value=5.9 Score=43.37 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=41.7
Q ss_pred CCceeccCcchHHHHH-------HHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 351 THLVFNDDIQGTASVV-------LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 351 ~~~~FNDDIQGTaaV~-------LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.+|++|-+---|-+++ ++.+=+.+|.++..|++.+++|+|.|..|.++|..+..
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a 275 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG 275 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 6899986654444433 44445557778899999999999999999999998853
No 41
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.34 E-value=1 Score=48.39 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=62.6
Q ss_pred eEEeeCCCccHHHHHHHHcC-CCc--eeccCcchHHHHHHHHHHHHHHHhCC--------CCCCceEEEeCcchHHHHHH
Q 012532 331 IQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFLGG--------SLADQRFLFLGAGEAGTGIA 399 (461)
Q Consensus 331 IqfEDF~~~nAf~lL~rYr~-~~~--~FNDDIQGTaaV~LAgllaAlrv~g~--------~L~d~rivf~GAGsAgiGIA 399 (461)
|.+|=+....-.++.++|.- ..| ++|++....|....+-++.+++.... ...+..+||+|||+||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777777889999973 444 45777788888888888888875321 23456899999999999999
Q ss_pred HHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 400 ELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 400 ~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88854 375 46666654
No 42
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.31 E-value=2 Score=46.25 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHcC-CCc--eeccCcchHHHHHHHHHHHHHHHh--------CCCCCCc
Q 012532 316 EFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFL--------GGSLADQ 384 (461)
Q Consensus 316 Efv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~-~~~--~FNDDIQGTaaV~LAgllaAlrv~--------g~~L~d~ 384 (461)
+.+..+.... |+ |..|=+....-.++.++|.- ..| ++|++..+.+....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3333334444 54 44555667777889999973 444 358887788888888887777643 1224457
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
++||+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999887754
No 43
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=87.26 E-value=2.1 Score=41.94 Aligned_cols=64 Identities=28% Similarity=0.311 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCC
Q 012532 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR 434 (461)
Q Consensus 360 QGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R 434 (461)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-|....
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~ 71 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD 71 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC
Confidence 3466667788888889889999999999999999999999988653 53 2355999999988765
No 44
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=87.20 E-value=1.3 Score=46.81 Aligned_cols=55 Identities=31% Similarity=0.486 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+|+.+++--|.+..+ ++.+.+++|+|||..|..+|..+.. .|. ++|+++|+.
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~ 215 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT 215 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC
Confidence 355666666554544444 6889999999999999999988753 253 468877763
No 45
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.19 E-value=1.7 Score=43.93 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 364 aV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+++-+++..|++..+.++...|++|+|+|.+|..++..+... |. +++++|++
T Consensus 133 ~~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~-----Ga-------~V~v~~r~ 184 (296)
T PRK08306 133 PTAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKAL-----GA-------NVTVGARK 184 (296)
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 333345666777788899999999999999999998888532 52 58888875
No 46
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.12 E-value=2.3 Score=40.61 Aligned_cols=55 Identities=29% Similarity=0.348 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHh--CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 361 GTASVVLAGLISAMKFL--GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~--g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.+... |. +++.+|.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~ 60 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADIN 60 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCC
Confidence 35555666777778875 8899999999999999999999988643 53 47777754
No 47
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=87.03 E-value=1.5 Score=46.41 Aligned_cols=56 Identities=29% Similarity=0.459 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 360 QGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+..+|+.+++--|.+..+ ++.+.+++|+|+|..|..+|..+... |. .+|+++|+.
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs 213 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRT 213 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCC
Confidence 5566777777766666655 48899999999999999999888542 53 357777663
No 48
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.77 E-value=0.74 Score=44.08 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+|++.||+++|+|..|.+||..++.+ |+ +++.++|.+=
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~ 55 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDV 55 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCE
Confidence 468899999999999999999999765 75 5799999863
No 49
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.95 E-value=1.8 Score=43.54 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=37.9
Q ss_pred CCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 351 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 351 ~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
+..=||-|-. |++.+++..+.+. +.++|++|||-|+-+|+-.|.. .|. ++|+++++
T Consensus 99 ~l~G~NTD~~--------Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR 154 (272)
T PRK12550 99 HLKAYNTDYI--------AIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVAR 154 (272)
T ss_pred EEEEEecCHH--------HHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeC
Confidence 3455676743 4566776656543 4699999999999999887753 254 34666665
No 50
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=85.50 E-value=2.2 Score=40.07 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 369 GLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 369 gllaAlrv~g~~L~d~rivf~GAGs-AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+.+-.++-...+|++.+++++|+|. +|..+|+.+... |. ++++++++
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~-----g~-------~V~v~~r~ 77 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNR-----NA-------TVTVCHSK 77 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhC-----CC-------EEEEEECC
Confidence 3344455556789999999999998 599899888542 42 48888864
No 51
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.27 E-value=0.94 Score=43.69 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=32.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|++.+|+++|+|..|..||+.|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999999754 76 579999975
No 52
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.23 E-value=1.5 Score=44.42 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~g~~L~d~rivf~GAGs-AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
..+-+|-.|++..++..+.+++.+++|++|+|- +|-.||.+|... | | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC
Confidence 346777799999999999999999999999997 999999998542 4 2 57888874
No 53
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.99 E-value=1.2 Score=42.51 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=33.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 578999999999999999999998765 75 589999986
No 54
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=84.52 E-value=2.1 Score=45.64 Aligned_cols=73 Identities=18% Similarity=0.325 Sum_probs=44.4
Q ss_pred ccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhc
Q 012532 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (461)
Q Consensus 339 ~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr 418 (461)
..||+.=.|.|.+.-+ + .|.-+|+-+|+=-|-+.. .++++.+++|+|||.+|-.+|..+.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------ 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------ 205 (414)
T ss_pred HHHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------
Confidence 3455555555543211 1 122244444444444443 35889999999999999888887743 254
Q ss_pred CcEEEEcCC
Q 012532 419 KKIWLVDSK 427 (461)
Q Consensus 419 ~~i~lvDs~ 427 (461)
++|+++++.
T Consensus 206 ~~I~V~nRt 214 (414)
T PRK13940 206 KQIMLANRT 214 (414)
T ss_pred CEEEEECCC
Confidence 468888773
No 55
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=84.46 E-value=2 Score=46.11 Aligned_cols=72 Identities=26% Similarity=0.418 Sum_probs=49.1
Q ss_pred ccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhc
Q 012532 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (461)
Q Consensus 339 ~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr 418 (461)
..||..=.|+|.+-- ++ .|-.+|.-|++--|-++.|. |++.+++|+|||+.|..+|..|... |.
T Consensus 139 qkAi~~gKrvRseT~-I~---~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETG-IG---KGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccC-CC---CCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 556666677775321 11 23345555566666666554 9999999999999999999888654 54
Q ss_pred CcEEEEcC
Q 012532 419 KKIWLVDS 426 (461)
Q Consensus 419 ~~i~lvDs 426 (461)
++|+++++
T Consensus 203 ~~i~IaNR 210 (414)
T COG0373 203 KKITIANR 210 (414)
T ss_pred CEEEEEcC
Confidence 57887776
No 56
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=84.24 E-value=1.8 Score=45.34 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=44.0
Q ss_pred ccHHHHHHHHcCCCceeccCcchHHHHHHH--HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhh
Q 012532 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLA--GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE 416 (461)
Q Consensus 339 ~nAf~lL~rYr~~~~~FNDDIQGTaaV~LA--gllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~ee 416 (461)
..||..=.|.|.+.- | |.++|.++ ++..+ +.. .+|++.+++++|||+.|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 455555556664321 1 33444443 33333 333 56999999999999988777777654 264
Q ss_pred hcCcEEEEcCCC
Q 012532 417 TRKKIWLVDSKG 428 (461)
Q Consensus 417 Ar~~i~lvDs~G 428 (461)
++|+++++.-
T Consensus 199 --~~i~v~nRt~ 208 (338)
T PRK00676 199 --SRITFCSRQQ 208 (338)
T ss_pred --CEEEEEcCCc
Confidence 4688888764
No 57
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.24 E-value=1.2 Score=42.92 Aligned_cols=39 Identities=36% Similarity=0.493 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+|++.||+|+|+|..|.-||+.|+.+ |+ ++|.++|.+=
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~ 55 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV 55 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE
Confidence 478899999999999999999999765 75 5899999764
No 58
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.00 E-value=1.2 Score=46.09 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+|++.+|+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 578899999999999999999999775 65 5899999875
No 59
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=83.41 E-value=1.8 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+|||+|+|.||+..|..+.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 68999999999999999972 24 3688998755
No 60
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.25 E-value=1.4 Score=43.42 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v 59 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV 59 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc
Confidence 468889999999999999999999765 75 58999997644
No 61
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.09 E-value=2.9 Score=41.21 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 351 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 351 ~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+..-||-|-.| ++.+++..+...+..+++|+|+|.+|.++|..+..
T Consensus 93 ~l~g~NTD~~G--------~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~ 138 (270)
T TIGR00507 93 KLVGYNTDGIG--------LVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK 138 (270)
T ss_pred EEEEEcCCHHH--------HHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH
Confidence 45667777544 44555544455667899999999888888777653
No 62
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.74 E-value=2.6 Score=45.48 Aligned_cols=37 Identities=35% Similarity=0.428 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.|++.+++..+.++++.+++|+|+|.+|.++|..+..
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~ 353 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR 353 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH
Confidence 3677888888889999999999999777777776653
No 63
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.72 E-value=1.3 Score=46.48 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=34.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.+|++.+|+++|+|..|.-||..|+.+ |+ ++|.++|.+=+
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v 76 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV 76 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE
Confidence 678899999999999999999999765 65 57999998643
No 64
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.21 E-value=1.2 Score=42.30 Aligned_cols=40 Identities=30% Similarity=0.517 Sum_probs=34.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
++|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~v 54 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRLV 54 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCcC
Confidence 568899999999999999999999765 76 57999998743
No 65
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.02 E-value=0.74 Score=50.18 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCc
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~ 420 (461)
.+..+|+|+|||.||+..|++|...-. .+..-|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 344589999999999999999987632 2455667665
No 66
>PRK08223 hypothetical protein; Validated
Probab=81.84 E-value=0.9 Score=46.45 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=44.9
Q ss_pred HHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcE
Q 012532 342 FDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 421 (461)
Q Consensus 342 f~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i 421 (461)
|..-++|..++..|..+- -.+|++.+|+|+|+|..|.-+|..|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~------------------Q~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTE------------------QQRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHH------------------HHHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 666677766655554332 2578899999999999999999999776 76 589
Q ss_pred EEEcCCCc
Q 012532 422 WLVDSKGL 429 (461)
Q Consensus 422 ~lvDs~GL 429 (461)
.++|.+=+
T Consensus 55 ~lvD~D~V 62 (287)
T PRK08223 55 TIADFDVF 62 (287)
T ss_pred EEEeCCCc
Confidence 99997644
No 67
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=81.01 E-value=2.1 Score=42.17 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999765 75 589999986
No 68
>PLN00203 glutamyl-tRNA reductase
Probab=80.74 E-value=3.1 Score=45.68 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=47.7
Q ss_pred ccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCC-CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhh
Q 012532 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGG-SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417 (461)
Q Consensus 339 ~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~-~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeA 417 (461)
..||+.=.|-|.+.-+ -.|--+|+-+++=-|.+..+. +|.+.+|+|+|||..|..+++.+.. .|.
T Consensus 225 ~~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~----- 290 (519)
T PLN00203 225 KHAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC----- 290 (519)
T ss_pred HHHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC-----
Confidence 3444444555543211 023445555566666666664 6999999999999999999887753 253
Q ss_pred cCcEEEEcCC
Q 012532 418 RKKIWLVDSK 427 (461)
Q Consensus 418 r~~i~lvDs~ 427 (461)
++|+++++.
T Consensus 291 -~~V~V~nRs 299 (519)
T PLN00203 291 -TKMVVVNRS 299 (519)
T ss_pred -CeEEEEeCC
Confidence 468888764
No 69
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.51 E-value=1.4 Score=41.98 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
++|++.+|+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 578899999999999999999999765 76 6899999874
No 70
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=79.86 E-value=0.97 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+...+.||||+|||.||++-|.-+.+
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999973
No 71
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.68 E-value=2.6 Score=37.22 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=28.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
||+++|+|..|..+|+.|+.. |. ++|.++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCC
Confidence 689999999999999999765 65 6899999763
No 72
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=79.40 E-value=0.99 Score=53.17 Aligned_cols=90 Identities=20% Similarity=0.319 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCCeeeEEeeCCCccHHH------------HHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCC
Q 012532 314 LHEFMTAVKQNYGERILIQFEDFANHNAFD------------LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSL 381 (461)
Q Consensus 314 vdEfv~av~~~fGp~~lIqfEDF~~~nAf~------------lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L 381 (461)
-.|.++++..+|-| +=||.-|..-.+.. .-+||...+.+|.. -.-.+|
T Consensus 358 aQEViKaisgKf~P--i~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~------------------~~Q~kL 417 (1008)
T TIGR01408 358 SQEVLKAVTGKFSP--LCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGD------------------TFQQKL 417 (1008)
T ss_pred HHHHHHHhcCCCCC--ceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCH------------------HHHHHH
Confidence 47999999999977 22555554333221 22344333333321 122568
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
++.||+++|||..|+-+++.|+.+ |+.-. ...+|.++|-+=+
T Consensus 418 ~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D~V 459 (1008)
T TIGR01408 418 QNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPDLI 459 (1008)
T ss_pred hhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCCEe
Confidence 889999999999999999999876 65211 1368999997543
No 73
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.09 E-value=2.7 Score=39.27 Aligned_cols=33 Identities=33% Similarity=0.400 Sum_probs=27.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
||+++|+|..|..||+.++.+ |+ ++|.++|.+=
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCE
Confidence 689999999999999999764 65 5799999863
No 74
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=78.64 E-value=5.1 Score=42.41 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 362 TaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 44457899999999899999999999999999999999998643 65 4777775
No 75
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.54 E-value=2.1 Score=44.40 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=32.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|++.+|+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 367889999999999999999999765 75 579999975
No 76
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.85 E-value=2.2 Score=48.32 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 567899999999999999999999776 76 68999997554
No 77
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.80 E-value=2.6 Score=41.53 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=33.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+=
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~ 45 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDV 45 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE
Confidence 357889999999999999999999765 76 5899999764
No 78
>PRK08605 D-lactate dehydrogenase; Validated
Probab=77.46 E-value=16 Score=37.59 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccC---cchHHHHHHHHHHHHHHH---------------
Q 012532 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDD---IQGTASVVLAGLISAMKF--------------- 376 (461)
Q Consensus 315 dEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDD---IQGTaaV~LAgllaAlrv--------------- 376 (461)
.|++++..+. |-+ +|+.-=-+..| .++-.--+..+.+.|-- -+.+|=-+++.+|+.+|-
T Consensus 59 ~~~l~~~~~~-~lk-~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNEL-GIK-QIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhhc-Cce-EEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 4666655431 111 25544333333 33333334567777742 245666678888876652
Q ss_pred ----hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 377 ----LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 377 ----~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+..|.+.+|.|+|+|..|..+|+.+..+ .|+ ++|.+|..
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~ 179 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPF 179 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCC
Confidence 13458899999999999999999999533 244 57877764
No 79
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=77.01 E-value=3.5 Score=38.67 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
+|.|+|||..|.|||-+++.+ |. ++.++|.+--
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECChH
Confidence 688999999999999999764 65 5888887543
No 80
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=77.01 E-value=3.2 Score=40.00 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
-.|+|+|||.||+..|..|... |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 3699999999999999888653 76 48899987654
No 81
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.67 E-value=5.1 Score=41.04 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~g~~L~d~rivf~GAGs-AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-.-+|-+|++..++-.+.+|++.+++++|+|. .|..+|.++... |. .+++++++
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~-----ga-------tVtv~~s~ 191 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQK-----NA-------SVTILHSR 191 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 445778899999999999999999999999988 999999998532 43 47788875
No 82
>PLN02928 oxidoreductase family protein
Probab=76.23 E-value=7.4 Score=40.36 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEE
Q 012532 360 QGTASVVLAGLISAMKF----------------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 423 (461)
Q Consensus 360 QGTaaV~LAgllaAlrv----------------~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~l 423 (461)
+.+|--+++.+|+.+|- .+..|.++++.|+|.|..|..+|+.+... |+ +|+.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777776663 24579999999999999999999998533 65 5777
Q ss_pred EcCC
Q 012532 424 VDSK 427 (461)
Q Consensus 424 vDs~ 427 (461)
+|+.
T Consensus 188 ~dr~ 191 (347)
T PLN02928 188 TRRS 191 (347)
T ss_pred ECCC
Confidence 7874
No 83
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=76.19 E-value=3.3 Score=42.92 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+|++.||+|+|||.-|.-+|..|+.+ |+ .+|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 578899999999999999999998765 75 5899999854
No 84
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.94 E-value=3.2 Score=43.07 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+|++.+|+++|+|..|.-+|..|+.+ |+ ++|.++|.+=
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~ 62 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDT 62 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE
Confidence 567899999999999999999998765 76 5899999864
No 85
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=75.44 E-value=3.6 Score=41.58 Aligned_cols=43 Identities=28% Similarity=0.381 Sum_probs=35.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcccc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~ 432 (461)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s 68 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT 68 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc
Confidence 468899999999999999999999765 76 57999998755433
No 86
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=75.23 E-value=6.4 Score=43.14 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=20.6
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+..+++.+++|+|||.||-+||..+..
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~ 400 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE 400 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH
Confidence 446888999999999777776666643
No 87
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.80 E-value=5.8 Score=31.71 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=29.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~ 431 (461)
|++|+|+|..|+-+|..+... | .++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 689999999999999988442 4 4799999988876
No 88
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=73.28 E-value=4.1 Score=36.98 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 387 vf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+|+|||.||+..|-.+.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977743 365 248889987
No 89
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=73.26 E-value=5.3 Score=41.13 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=27.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+|||+|+|.||+..|+.|... |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 467899999999999999998653 42 2368888765
No 90
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=72.74 E-value=3.3 Score=43.50 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|++.+|+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 678899999999999999999999765 76 579999965
No 91
>PLN02494 adenosylhomocysteinase
Probab=72.20 E-value=7.1 Score=42.78 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=41.6
Q ss_pred CCceec----------cCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHH
Q 012532 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403 (461)
Q Consensus 351 ~~~~FN----------DDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~ 403 (461)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~ak 274 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMK 274 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHH
Confidence 677776 446788888888877 56777899999999999999999999984
No 92
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=71.66 E-value=30 Score=31.77 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=62.6
Q ss_pred eeeccCCCCCCccccchhhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHH
Q 012532 244 RILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQ 323 (461)
Q Consensus 244 rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~ 323 (461)
||||+ |.|....|..+-.. ..--|-.+|.|+=..+ .+....+....+.+++ +.+..
T Consensus 1 rILGI-DPGl~~~G~av~~~-----------~~~~~~~~~~g~i~t~-----------~~~~~~~rl~~I~~~l-~~~i~ 56 (154)
T cd00529 1 RILGI-DPGSRNTGYGVIEQ-----------EGRKLIYLASGVIRTS-----------SDAPLPSRLKTIYDGL-NEVID 56 (154)
T ss_pred CEEEE-ccCcCceEEEEEEe-----------eCCeEEEEEeeEEECC-----------CCCCHHHHHHHHHHHH-HHHHH
Confidence 67888 88887666655322 1123666777763321 1222344455544444 44456
Q ss_pred hcCCCeeeEEee-CCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCC-----CceEEEeCcchHHH
Q 012532 324 NYGERILIQFED-FANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLA-----DQRFLFLGAGEAGT 396 (461)
Q Consensus 324 ~fGp~~lIqfED-F~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~-----d~rivf~GAGsAgi 396 (461)
.|-|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++. ..|-.+.|.|.|.-
T Consensus 57 ~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 57 QFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred HhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 78786 567898 434443222211 1134455666666677654 45777889998865
No 93
>PRK07411 hypothetical protein; Validated
Probab=71.55 E-value=4.1 Score=42.88 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=34.1
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
..+|++.||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+=
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D~ 72 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFDV 72 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE
Confidence 3578899999999999999999999876 76 5899999753
No 94
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=71.15 E-value=5.1 Score=38.25 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+++|+|||.||+..|..+.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999987743 254 58889964
No 95
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=71.11 E-value=44 Score=36.23 Aligned_cols=120 Identities=25% Similarity=0.240 Sum_probs=85.2
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCcc-H-HHHHHHHcCC-----Ccee------c----cCcchHHHH
Q 012532 303 KRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHN-A-FDLLEKYGTT-----HLVF------N----DDIQGTASV 365 (461)
Q Consensus 303 ~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~n-A-f~lL~rYr~~-----~~~F------N----DDIQGTaaV 365 (461)
|..+..|-.+|...|++++.+.-||+.-|-=+|++..- . --+.+.|+.- .++| . +----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 34677888999999999999999999999999998621 1 1256666531 1222 1 111224332
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccC
Q 012532 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS 433 (461)
Q Consensus 366 ~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~ 433 (461)
+.-++-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. +=+-+=|++|-|+..
T Consensus 190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~ 246 (411)
T COG0334 190 VFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDE 246 (411)
T ss_pred hHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecC
Confidence 2333348888889889999999999999999999888643 53 456677899988775
No 96
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=70.96 E-value=7.8 Score=35.94 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=34.5
Q ss_pred HHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 374 MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 374 lrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
....+..|.++++.|+|.|..|..+|+++... |+ +|+.+|+..-
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~ 70 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK 70 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC
Confidence 34567889999999999999999999999643 64 5888887554
No 97
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=70.83 E-value=11 Score=40.06 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
..|=-+++.+++..|-.|..|++.++.|+|.|..|-.+|+.+... |+ ++..+|.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp 147 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDP 147 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 455567888998888889999999999999999999999999643 65 5777775
No 98
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=70.41 E-value=4.1 Score=41.60 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
++|++-+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCCc
Confidence 467899999999999999999999876 76 6899999863
No 99
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.41 E-value=8.1 Score=39.95 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHH
Q 012532 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALE 405 (461)
Q Consensus 363 aaV~LAgllaAlrv~g~~L~d~rivf~GAG-sAgiGIA~li~~~ 405 (461)
.-+|-+|++.=++-.|.+++.++|+|+|.| ..|..+|.+|...
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ 182 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA 182 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC
Confidence 466778888889999999999999999996 9999999999653
No 100
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=68.65 E-value=4.6 Score=41.09 Aligned_cols=32 Identities=38% Similarity=0.838 Sum_probs=27.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
..+-|+|||-.|-|||...+.+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988765 77 59999974
No 101
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=68.32 E-value=3.4 Score=42.28 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~ 405 (461)
.+|+|+|||-||+..|..|...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999764
No 102
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=68.32 E-value=6.9 Score=38.72 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=28.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
||+++|+|..|.-+++.|+.+ |+ ++|.++|.+=+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D~V 34 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMDTI 34 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEE
Confidence 689999999999999999765 76 68999998654
No 103
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=68.20 E-value=4.6 Score=44.99 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=31.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
++..|.+++|||+-|++||+-++.. |+ ++|.+||.--
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~k 374 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGK 374 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCe
Confidence 3567999999999999999999887 54 5899999643
No 104
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=68.07 E-value=13 Score=36.95 Aligned_cols=65 Identities=28% Similarity=0.371 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCC-CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCC
Q 012532 359 IQGTASVVLAGLISAMKFLGGS-LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR 434 (461)
Q Consensus 359 IQGTaaV~LAgllaAlrv~g~~-L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R 434 (461)
-+-||-=+..++-++++..+.. +++.|++|-|.|..|...|+.+.+. |. +=+-+.|++|.|+...
T Consensus 7 ~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~ 72 (244)
T PF00208_consen 7 SEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPD 72 (244)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETT
T ss_pred CcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCC
Confidence 4567777888888999997766 9999999999999999999999764 52 2356678888888643
No 105
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=67.48 E-value=7 Score=40.60 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=28.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
||+++|||.-|.-||+.|+.+ |+ ++|.++|.+=
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE
Confidence 689999999999999999776 76 5899999653
No 106
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=67.46 E-value=6.9 Score=40.31 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=26.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
++|+|||.||..+|..+..+ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998443 124 368888887655
No 107
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=66.88 E-value=6.6 Score=40.80 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=23.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988764 365 36666654
No 108
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=66.83 E-value=7.9 Score=40.29 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHH
Q 012532 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIAL 404 (461)
Q Consensus 360 QGTaaV~LAgllaAlrv~g~~L~d~rivf~GA-GsAgiGIA~li~~ 404 (461)
-+||-++.-+++.+...+|..|++..+-|+|| |..|.+||+.|.-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 37899999999999999999999999999998 9999999999854
No 109
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=66.71 E-value=18 Score=35.12 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
+..+.|++..+. ..+.+++|+|+|+.|...+.+. .+ .|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 344556655543 3788999999987666554443 22 364 34666664
No 110
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=66.64 E-value=6.9 Score=40.07 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 48999999999999988764 365 47778876
No 111
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.77 E-value=7.7 Score=39.75 Aligned_cols=34 Identities=26% Similarity=0.567 Sum_probs=29.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
||+++|||.-|.-+++.|+.. |+ ++|.++|.+=+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCEe
Confidence 689999999999999999875 76 58999997644
No 112
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.62 E-value=8.3 Score=38.21 Aligned_cols=32 Identities=38% Similarity=0.624 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++|.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 4799999999999999988643 53 48888864
No 113
>PRK07236 hypothetical protein; Provisional
Probab=65.29 E-value=9.4 Score=38.90 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
++..+|+|+|||.||+..|..|..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456899999999999999998865
No 114
>PRK06153 hypothetical protein; Provisional
Probab=65.17 E-value=5.5 Score=42.64 Aligned_cols=100 Identities=31% Similarity=0.450 Sum_probs=58.3
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceE
Q 012532 307 GQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 386 (461)
Q Consensus 307 geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~ri 386 (461)
+..|..+.++++.-+.---||-..|..+ .++.-|+.... +++=.+||= +=|++.= +| +. ..-.+|++.||
T Consensus 110 ~~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~-~~~~svf~y--~dt~s~R-~~-i~---~~q~kL~~~~V 179 (393)
T PRK06153 110 GGGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIED-AEEDSVFNY--PDTASSR-AG-IG---ALSAKLEGQRI 179 (393)
T ss_pred CCCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCC-cccCCceeh--hhhhccc-cC-hH---HHHHHHhhCcE
Confidence 3568888888888776666664444222 12333332111 112233331 0111110 01 11 11367889999
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 387 vf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+|+|+|..|--|+++|+.. |+ ++|.++|-+
T Consensus 180 aIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D 209 (393)
T PRK06153 180 AIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD 209 (393)
T ss_pred EEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 9999999999999999765 65 589999976
No 115
>PRK06184 hypothetical protein; Provisional
Probab=65.07 E-value=8.4 Score=41.01 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=26.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++..|+|+|||.||+..|-+|.. .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 45789999999999999988754 376 36677764
No 116
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=64.87 E-value=6.8 Score=35.40 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=27.9
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 387 vf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
+|+|+|.+|+.+++.|+... . ....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~------~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-D------PKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-C------CCCCCEEEEEcCCCc
Confidence 48999999999999998874 1 113457999998655
No 117
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=64.81 E-value=8.9 Score=38.05 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|.|+|||..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988653 64 58888864
No 118
>PRK06847 hypothetical protein; Provisional
Probab=64.40 E-value=9.2 Score=38.33 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.1
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 012532 383 DQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~ 404 (461)
..+|+|+|||.||+..|..+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4579999999999999998754
No 119
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=64.29 E-value=21 Score=36.84 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHH-------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcE
Q 012532 361 GTASVVLAGLISAMKF-------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 421 (461)
Q Consensus 361 GTaaV~LAgllaAlrv-------------------~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i 421 (461)
..|=-+++-+|+.+|- .+..|.+.+|.|+|.|..|..+|+.+... |. ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EE
Confidence 3444566666666553 13468899999999999999999988532 54 47
Q ss_pred EEEcCC
Q 012532 422 WLVDSK 427 (461)
Q Consensus 422 ~lvDs~ 427 (461)
+.+|..
T Consensus 173 ~~~d~~ 178 (330)
T PRK12480 173 TAYDAY 178 (330)
T ss_pred EEEeCC
Confidence 777753
No 120
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=64.20 E-value=8.8 Score=39.28 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+|+|+|||-+|+.+|..|.+. |. ++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g~-------~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----GY-------QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCCC
Confidence 4899999999999999988653 53 689999865
No 121
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=63.65 E-value=9.9 Score=36.70 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=27.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.|+|+|||-+|+.+|..|.+ .|. ++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G~-------~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RGH-------SVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TTS-------EEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeeccc
Confidence 38999999999999998865 364 6999999833
No 122
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=63.55 E-value=9.9 Score=40.87 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 4556899999999999999988864
No 123
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=63.52 E-value=5.1 Score=40.33 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=27.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
+|||+|+|.||+-.|+.+..... ...+|.++|++.-.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCCC
Confidence 58999999999998888743210 12479999987653
No 124
>PRK08163 salicylate hydroxylase; Provisional
Probab=63.25 E-value=9.4 Score=38.64 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.0
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 012532 383 DQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~ 404 (461)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988754
No 125
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=62.96 E-value=15 Score=40.13 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3467899999999999999987743 263 48888864
No 126
>PRK09126 hypothetical protein; Provisional
Probab=62.65 E-value=9.7 Score=38.50 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=25.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..|+|+|||.||+..|-.+... |+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-----G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-----GL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 45799999999999999888653 65 36666654
No 127
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=62.28 E-value=14 Score=30.05 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEE-cC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DS 426 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lv-Ds 426 (461)
||.|+|+|..|..+++.+... |. ...+|+++ ++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r 34 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSR 34 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccC
Confidence 689999999999999988654 54 34577755 54
No 128
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.23 E-value=11 Score=37.52 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5899999999999999887543 53 58888864
No 129
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.84 E-value=11 Score=38.99 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=29.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D~V 34 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLDTI 34 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCCCc
Confidence 689999999999999999765 76 68999997644
No 130
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=61.78 E-value=12 Score=35.99 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
+|++.++||+|+|..|.-.|+.+..+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ 32 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY 32 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 57899999999999999888888654
No 131
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=61.61 E-value=21 Score=35.66 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 370 llaAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
.+.|++..+. ..+++++|.|||+.|...+.+.
T Consensus 158 a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqla 189 (343)
T PRK09880 158 AIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAV 189 (343)
T ss_pred HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHH
Confidence 3455554433 3688999999997777665443
No 132
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=61.59 E-value=12 Score=36.15 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
+|+++++||+|+|..|..-++.++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ 31 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA 31 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC
Confidence 47889999999999999999888764
No 133
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=61.52 E-value=9.4 Score=38.62 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=23.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
|+|+|||.||+..|..+.. .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977643 254 577777653
No 134
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.43 E-value=11 Score=37.93 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=24.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.+|.|+|||..|.|||..++.+ |. +++++|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~ 36 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFET 36 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEEC
Confidence 3899999999999999988654 64 4677765
No 135
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=60.94 E-value=11 Score=37.43 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=26.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+..++|+|||.||+..|-.+.. .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5679999999999999987743 365 588888763
No 136
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.74 E-value=14 Score=39.22 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.4
Q ss_pred hCCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 377 LGGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 377 ~g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.+..++.++++|+|+|.+|+.+|+.+..
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 4556788899999999999999888753
No 137
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=60.29 E-value=13 Score=39.37 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=28.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+.+..+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 4567899999999999999988854 253 58888864
No 138
>PRK13243 glyoxylate reductase; Reviewed
Probab=60.23 E-value=27 Score=36.04 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~ 182 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRT 182 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 4568999999999999999999998643 54 47777763
No 139
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.22 E-value=13 Score=38.91 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=28.8
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+++.+++|+|+|.+|.++|+.++.. |. +++++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G~-------~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----GA-------KVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 36788999999999999999888643 53 57777775
No 140
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=60.13 E-value=9.9 Score=38.74 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.3
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 012532 383 DQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~ 404 (461)
+.+|+|+|||.||+..|-.|..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4679999999999999988864
No 141
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.08 E-value=12 Score=37.07 Aligned_cols=32 Identities=34% Similarity=0.581 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++|.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988643 54 57788863
No 142
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=59.45 E-value=11 Score=38.89 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=29.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcccc
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~ 432 (461)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+-.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G~ 40 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPGA 40 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCCC
Confidence 4689999999999999998654 65 4888888776643
No 143
>PLN02306 hydroxypyruvate reductase
Probab=59.37 E-value=27 Score=37.11 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=47.4
Q ss_pred cCCCceeccCc---chHHHHHHHHHHHHHHHh---------------------CCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 349 GTTHLVFNDDI---QGTASVVLAGLISAMKFL---------------------GGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 349 r~~~~~FNDDI---QGTaaV~LAgllaAlrv~---------------------g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+..+.+.|--- ..+|=-+++-+|+..|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 35677777532 234445677777765432 345889999999999999999999865
Q ss_pred HHHHhCCCChhhhcCcEEEEcCC
Q 012532 405 EISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 405 ~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+| |+ +++.+|..
T Consensus 187 ~f----Gm-------~V~~~d~~ 198 (386)
T PLN02306 187 GF----KM-------NLIYYDLY 198 (386)
T ss_pred cC----CC-------EEEEECCC
Confidence 53 54 57778864
No 144
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=59.31 E-value=14 Score=38.05 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=27.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
-.||.|+|||..|.++|.+++. .|+. .+.|+|.+-
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~ 40 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVK 40 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCC
Confidence 3699999999999999997653 3652 399999743
No 145
>PRK06475 salicylate hydroxylase; Provisional
Probab=59.22 E-value=11 Score=38.71 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~ 404 (461)
+||+|+|||.||+..|-.|..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999977744
No 146
>PRK07233 hypothetical protein; Provisional
Probab=58.89 E-value=11 Score=38.26 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=23.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
||+|+|||-||+..|..|.+. |. ++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G~-------~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----GH-------EVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEEeC
Confidence 689999999999999888553 53 46666665
No 147
>PRK06753 hypothetical protein; Provisional
Probab=58.43 E-value=13 Score=37.42 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.8
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
+|+|+|||.||+..|..+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 69999999999999988854
No 148
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=58.32 E-value=14 Score=39.33 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+.+++|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 46799999999999999988754 254 58888875
No 149
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=58.25 E-value=12 Score=35.33 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.|+|+|||.||+..|-.+.. .|+ ++.++|+.-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 37999999999999977743 365 5777877643
No 150
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=57.93 E-value=14 Score=43.48 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=31.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC----Ccccc
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIVS 432 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~----GLi~~ 432 (461)
-++.||+|+|||.||+..|..+... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 4579999999999999999998743 65 58888875 66543
No 151
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=57.83 E-value=15 Score=41.03 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=27.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-++.+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 3578999999999999999888642 54 47788864
No 152
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=57.50 E-value=28 Score=36.44 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+...+++|+|+|.+|.++|+.+... |. ++.++|++
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC
Confidence 5678899999999999999988543 53 37777763
No 153
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=57.48 E-value=12 Score=40.42 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
-.|||+|+|.+|++||..+... |+ ++.++|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 4699999999999999887643 76 4888988644
No 154
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=57.45 E-value=12 Score=39.92 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=27.1
Q ss_pred CCCCC--ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 379 GSLAD--QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 379 ~~L~d--~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+++++ -.|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~-----~G~-------~VlllEr~ 71 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAK-----GGI-------ETFLIERK 71 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 34544 368999999999999988754 376 36677765
No 155
>PRK07045 putative monooxygenase; Reviewed
Probab=57.19 E-value=14 Score=37.62 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~ 404 (461)
-+|+|+|||.||+..|-.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988754
No 156
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=57.04 E-value=34 Score=34.96 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=46.4
Q ss_pred CCCceeccCc---chHHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcchHHHHHHHHH
Q 012532 350 TTHLVFNDDI---QGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 350 ~~~~~FNDDI---QGTaaV~LAgllaAlrv~------------------------g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
..+.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4455555321 345556677777766532 2468999999999999999999998
Q ss_pred HHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 403 ALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 403 ~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
. ++ |+ +|+.+|+.+
T Consensus 165 ~-~f----gm-------~V~~~d~~~ 178 (311)
T PRK08410 165 Q-AF----GA-------KVVYYSTSG 178 (311)
T ss_pred h-hc----CC-------EEEEECCCc
Confidence 5 33 65 578888753
No 157
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.94 E-value=21 Score=36.71 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeC-cchHHHHHHHHHHH
Q 012532 363 ASVVLAGLISAMKFLGGSLADQRFLFLG-AGEAGTGIAELIAL 404 (461)
Q Consensus 363 aaV~LAgllaAlrv~g~~L~d~rivf~G-AGsAgiGIA~li~~ 404 (461)
.-+|-.|++.=++-.+.+++.++++|+| .|..|..+|.+|..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~ 180 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA 180 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh
Confidence 4667788888888899999999999999 99999999999974
No 158
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=56.90 E-value=16 Score=37.83 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.||||+|||.||+..|..+... |- .-+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999987542 21 126889988754
No 159
>PLN02268 probable polyamine oxidase
Probab=56.84 E-value=4.5 Score=41.79 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=27.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCC--CChhhhcCc----EEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTN--MPLEETRKK----IWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~G--ls~eeAr~~----i~lvDs~GL 429 (461)
+|+|+|||-||+..|..|.+. | +..=||+.| ++-....|.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-----g~~v~vlEa~~r~GGri~t~~~~g~ 47 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-----SFKVTLLESRDRIGGRVHTDYSFGF 47 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-----CCeEEEEeCCCCCCceeeecCcCCc
Confidence 789999999999999999653 4 334455553 454444453
No 160
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=56.14 E-value=10 Score=34.99 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
+|++.++||+|+|..|.-.|+.|..+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ 35 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT 35 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC
Confidence 57899999999999999999888664
No 161
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.04 E-value=18 Score=39.56 Aligned_cols=104 Identities=22% Similarity=0.343 Sum_probs=65.8
Q ss_pred CCCCccccchhhhhhHhhhcCCCCCCeeeEEe-ecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCe
Q 012532 251 LGCHGMGIPVGKLSLYTALGGIRPSACLPVTI-DVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI 329 (461)
Q Consensus 251 lG~~GmgI~iGKl~LYta~gGI~P~~~LPV~L-DvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~ 329 (461)
.|+.|. ||+++-.|.|+-==-...-+.| .|+. |.+ +...+ ..+= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~-n~d-----------------------Lr~LL---~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKL-DSD-----------------------LRHLL---LATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccC-cHH-----------------------HHHHH---HhCC-CCc
Confidence 466664 7999999999865223555555 5553 311 23333 3333 788
Q ss_pred eeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 012532 330 LIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391 (461)
Q Consensus 330 lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GA 391 (461)
+|-.|||.. ||.+=++=..+-.-|.+ .-.-|+|+||||++--.-..=-+.||+||=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 999999954 45544443333333333 4567999999999875555555789988865
No 162
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.72 E-value=15 Score=37.99 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.+|.|+|||..|.|||..++.+ |+ ++.++|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999998754 65 4777775
No 163
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=55.60 E-value=35 Score=34.89 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 369 gllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
|.++|...... ...+++++|+|..|..++..+... .++ ++|+++++
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R 162 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWAR 162 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECC
Confidence 44444444322 346899999999999998877543 243 46888776
No 164
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=55.45 E-value=14 Score=37.32 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=24.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-.|+|+|||.||+..|-.+.. .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 369999999999999977753 364 47777765
No 165
>PLN02463 lycopene beta cyclase
Probab=55.36 E-value=14 Score=39.78 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 378999999999999987753 365 46677764
No 166
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=55.27 E-value=20 Score=37.71 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcchHHHHHHHHHHHH
Q 012532 361 GTASVVLAGLISAMKFL--------------------GGSLADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~--------------------g~~L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
-||-++++-+|.++|-. |..+.++|+.|+|+|+.|.-||+.|...
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc
Confidence 57888888888888753 3467889999999999999999999763
No 167
>PRK14851 hypothetical protein; Provisional
Probab=54.99 E-value=12 Score=42.68 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=34.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
++|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|-+=+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~v 78 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQF 78 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEe
Confidence 678899999999999999999998765 76 58999997544
No 168
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.88 E-value=13 Score=33.81 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
||.|+|||+.|+++|..+... | .++.|.+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccH
Confidence 689999999999999988653 4 3566766653
No 169
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.72 E-value=17 Score=36.29 Aligned_cols=31 Identities=39% Similarity=0.709 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
++|.|+|+|..|.+||..++.. |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5799999999999999988643 53 4778885
No 170
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=54.65 E-value=35 Score=35.00 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcchHHHHHHHHHHHH
Q 012532 361 GTASVVLAGLISAMKFL----------------GGSLADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 361 GTaaV~LAgllaAlrv~----------------g~~L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
..|--+++-+|+..|-. +..++++++.|+|.|..|..||+.+...
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af 158 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW 158 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 34555666666654422 3468899999999999999999999743
No 171
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=54.43 E-value=13 Score=37.40 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.7
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 012532 386 FLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~ 405 (461)
|+|+|||.||+..|..|...
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999988653
No 172
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=54.36 E-value=18 Score=32.59 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=27.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GA-GsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.||.|+|| |..|..+|-+|+.. ++- +.|.|+|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccC
Confidence 38999999 99999999988653 552 459999987
No 173
>PRK06436 glycerate dehydrogenase; Provisional
Probab=54.27 E-value=36 Score=34.86 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|+.
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~r~ 154 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYTRS 154 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEECCC
Confidence 35799999999999999999998664 32 65 47778864
No 174
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=54.20 E-value=17 Score=37.06 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=24.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
..+|+|+|||.||...|-.|.. .|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 3579999999999999977643 376 46667754
No 175
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=54.20 E-value=19 Score=36.13 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=25.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
+--++|+|||+||+..|..|.+. |+ ++-+++++=-+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred cCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 45689999999999999887654 65 58888876433
No 176
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=54.12 E-value=15 Score=38.73 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-.|+|+|||.||...|-.+.. .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 468999999999999988754 376 47777765
No 177
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=53.91 E-value=19 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=23.3
Q ss_pred EeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 388 f~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
|+|||.+|+..|..|.+. | .+|.+++++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 789999999999888643 4 378889886544
No 178
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=53.86 E-value=18 Score=38.27 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=27.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g~-------~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KGY-------DVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccC
Confidence 345799999999999999887743 253 58888875
No 179
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=53.77 E-value=12 Score=36.57 Aligned_cols=39 Identities=36% Similarity=0.526 Sum_probs=32.9
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-++|++-|++++|||.-|..+|..++.+ |+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 4678899999999999999999999776 65 459999974
No 180
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=53.70 E-value=15 Score=37.43 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
...|+|+|||.||+..|-.|.. .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 4579999999999999977643 365 477788753
No 181
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=53.69 E-value=31 Score=35.78 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEE
Q 012532 362 TASVVLAGLISAMK------------------FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 423 (461)
Q Consensus 362 TaaV~LAgllaAlr------------------v~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~l 423 (461)
.|=-++|.+|+..| ..|..|.++++-|+|.|..|..+|+.+... |+ ++..
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~~ 170 (324)
T COG0111 103 VAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVIG 170 (324)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEEE
Confidence 34456788888877 567789999999999999999999998554 55 4666
Q ss_pred EcC
Q 012532 424 VDS 426 (461)
Q Consensus 424 vDs 426 (461)
+|.
T Consensus 171 ~d~ 173 (324)
T COG0111 171 YDP 173 (324)
T ss_pred ECC
Confidence 666
No 182
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=53.56 E-value=16 Score=40.02 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=27.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-++|.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 346899999999999999998654 65 47777754
No 183
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=53.47 E-value=18 Score=38.65 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=27.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+.-+++|+|||.+|+++|.-|.++ |.+ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 345899999999999999988654 664 266777664
No 184
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=53.38 E-value=15 Score=41.83 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|.|+|||..|.|||..++.+ |+ +++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-----G~-------~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-----GV-------PVIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5899999999999999988654 75 47888864
No 185
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=53.14 E-value=16 Score=39.84 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+-.|+|+|||..|++||..+... |+ ++.++|+.-
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECCC
Confidence 35699999999999999988643 75 588999853
No 186
>PRK06223 malate dehydrogenase; Reviewed
Probab=53.08 E-value=17 Score=36.22 Aligned_cols=32 Identities=31% Similarity=0.628 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.||.|+|||..|.++|..++.. |+ + .++++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~----~--ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL----G--DVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC----e--EEEEEEC
Confidence 4899999999999999987542 44 1 5889997
No 187
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=52.93 E-value=19 Score=35.76 Aligned_cols=32 Identities=44% Similarity=0.847 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|.|+|+|..|.+||..++.+ |. +++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G~-------~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----GM-------DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 4799999999999999998754 53 58888853
No 188
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=52.86 E-value=18 Score=36.17 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=27.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
...|+|+|||.+|+.+|-.|.+. |. ++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g~-------~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----GL-------RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecccC
Confidence 34699999999999999777543 53 6889997643
No 189
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=52.74 E-value=21 Score=37.04 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.4
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 012532 386 FLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~ 405 (461)
|+|+|||.||+.+|..+...
T Consensus 2 viIvGaG~AGl~lA~~L~~~ 21 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA 21 (370)
T ss_pred EEEECccHHHHHHHHHHHhc
Confidence 79999999999999877644
No 190
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=52.72 E-value=47 Score=31.64 Aligned_cols=42 Identities=29% Similarity=0.497 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 360 QGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+..
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~ 44 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRG 44 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhh
Confidence 477777777776 468899999999999999999999998843
No 191
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=52.68 E-value=17 Score=35.95 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=27.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.+-.++|+|||.||+..|..+.. .|+ ++.+++++.-
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G~-------~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NGL-------KVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCCC
Confidence 46789999999999999987743 254 5778887643
No 192
>PRK08013 oxidoreductase; Provisional
Probab=52.58 E-value=18 Score=37.27 Aligned_cols=33 Identities=12% Similarity=0.309 Sum_probs=24.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-.|+|+|||.||+..|-.+.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3579999999999999977643 376 46667654
No 193
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=52.52 E-value=16 Score=39.28 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
..|||+|+|.+|.++|..+... |+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECCC
Confidence 4799999999999999998643 76 488898763
No 194
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.15 E-value=19 Score=38.50 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.5
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.+...||+|+|+|-+|.++|+.+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~ 36 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE 36 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH
Confidence 3566799999999999999999864
No 195
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=52.15 E-value=20 Score=40.57 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=28.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-.+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 34678999999999999999988653 64 58888874
No 196
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=51.90 E-value=16 Score=36.40 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=23.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
|+|+|||.||+-.|..|.. .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999977754 365 466666664
No 197
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.86 E-value=51 Score=30.27 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 364 aV~LAgllaAlrv~g~~L~d~rivf~GAGs-AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-++..|++..++..|.+++.++++++|.+. .|.-+|.+|. + .|. .+..+|++
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~ga-------tV~~~~~~ 61 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DGA-------TVYSCDWK 61 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEeCCC
Confidence 467889999999999999999999999864 4445555543 3 354 36677754
No 198
>PRK06185 hypothetical protein; Provisional
Probab=51.83 E-value=18 Score=36.86 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=26.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+..|+|+|||.+|...|-.+.. .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4579999999999999977643 376 477788764
No 199
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=51.82 E-value=17 Score=40.03 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~ 404 (461)
.||+|+|||.+|+..|+.+.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e 22 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE 22 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHH
Confidence 589999999999999999865
No 200
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=51.79 E-value=18 Score=36.19 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=26.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
.|+|+|||.+|+.+|-.|.. .|. ++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g~-------~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HGK-------KTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCCC
Confidence 48999999999999988753 253 58889987553
No 201
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=51.62 E-value=18 Score=43.11 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-+.++|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4578999999999999999998653 64 58888865
No 202
>PRK12831 putative oxidoreductase; Provisional
Probab=51.60 E-value=19 Score=38.43 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-...+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 3567999999999999999888653 54 57788763
No 203
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=51.58 E-value=16 Score=36.95 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=25.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..|+|+|||.||+..|-.+.. .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999977643 365 47777765
No 204
>PRK08244 hypothetical protein; Provisional
Probab=51.32 E-value=18 Score=38.30 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=24.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~-----~G~-------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL-----AGV-------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 469999999999999988754 376 36666654
No 205
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=51.30 E-value=20 Score=37.48 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
-.+||+|||+||+..|..+... | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999887542 5 3699999863
No 206
>PRK07588 hypothetical protein; Provisional
Probab=51.23 E-value=19 Score=36.62 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
+|+|+|||.||+..|-.|..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999988754
No 207
>PRK10262 thioredoxin reductase; Provisional
Probab=51.08 E-value=16 Score=36.24 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
-+..+|+|+|||.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988764
No 208
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=51.08 E-value=18 Score=37.96 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
-.++|+|||+||+..|..+... |. ++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G~-------~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----GL-------KVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEeccc
Confidence 3689999999999999887543 53 688999764
No 209
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=50.93 E-value=20 Score=36.90 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=29.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC--CccccCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK--GLIVSSR 434 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~--GLi~~~R 434 (461)
...|+|+|||.||+..|-.|.. .|+ ++-++++. .+...+|
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~~~~~~~~~r 43 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERAPRELLERGR 43 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccCccccccCce
Confidence 3579999999999999887754 376 58888886 4444444
No 210
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=50.92 E-value=25 Score=35.65 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-..++|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 50 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLAC-----LGY-------EVHVYDKL 50 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 3345799999999999999888753 253 58888875
No 211
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=50.89 E-value=22 Score=35.83 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=26.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
||.|+|||.+|..+|..++.. |+ ...|.++|.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-----g~-----~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-----GI-----ADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-----CC-----CCEEEEEeCC
Confidence 799999999999999987542 54 2469999974
No 212
>PLN02676 polyamine oxidase
Probab=50.68 E-value=45 Score=36.04 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
...+++|+|||.+|+..|..+...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc
Confidence 355799999999999999998653
No 213
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=50.49 E-value=22 Score=39.89 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=27.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457999999999999999888642 53 47788764
No 214
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=50.49 E-value=16 Score=37.44 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=24.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 68999999999999987743 365 46777765
No 215
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=50.22 E-value=51 Score=30.45 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 370 llaAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
.+.++...+.-.+++++++.|+|+.|..++++.
T Consensus 122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a 154 (271)
T cd05188 122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154 (271)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHH
Confidence 334455555445788999999998666655544
No 216
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=50.17 E-value=22 Score=36.43 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=25.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
..+|+|+|||.||+..|-.|.. .|++ +.++|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-----~G~~-------v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-----AGID-------SVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----cCCC-------EEEEEcCC
Confidence 3579999999999999987754 3763 56666553
No 217
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=49.81 E-value=18 Score=38.89 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=32.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
..|++-+|+++|+|..|.-|++.|+.. |+ ++|.++|.+=
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~~ 54 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGSK 54 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCCc
Confidence 457889999999999999999999775 76 5799999753
No 218
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=49.81 E-value=21 Score=35.87 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|.|+|+|..|.++|..+... |. +++++|..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999988653 64 47777764
No 219
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.69 E-value=35 Score=35.12 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHH
Q 012532 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIAL 404 (461)
Q Consensus 363 aaV~LAgllaAlrv~g~~L~d~rivf~GAG-sAgiGIA~li~~ 404 (461)
.-+|-+|++.=++-.+.+++..++|++|.| ..|.-+|.++..
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~ 179 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN 179 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence 457788888889999999999999999999 999999999864
No 220
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=49.57 E-value=18 Score=40.51 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=26.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++..|+|+|||.||+..|-.|... .|+ ++-++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 356899999999999999888642 265 36677765
No 221
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=49.53 E-value=21 Score=36.58 Aligned_cols=33 Identities=15% Similarity=0.422 Sum_probs=25.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
...|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3579999999999999977643 376 46677764
No 222
>PRK07538 hypothetical protein; Provisional
Probab=49.29 E-value=20 Score=36.92 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.9
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
+|+|+|||.||+..|-.|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999977644
No 223
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=49.24 E-value=40 Score=37.01 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=45.2
Q ss_pred CCCceeccCc---chHHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 012532 350 TTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 408 (461)
Q Consensus 350 ~~~~~FNDDI---QGTaaV~LAgllaAlrv------------------~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~ 408 (461)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 3455555321 23455567777776653 24568899999999999999999998643
Q ss_pred hCCCChhhhcCcEEEEcCC
Q 012532 409 QTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 409 ~~Gls~eeAr~~i~lvDs~ 427 (461)
|+ +++.+|..
T Consensus 163 --G~-------~V~~~d~~ 172 (526)
T PRK13581 163 --GM-------KVIAYDPY 172 (526)
T ss_pred --CC-------EEEEECCC
Confidence 54 47777763
No 224
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=49.22 E-value=23 Score=38.18 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=27.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
...+++|+|||.||+..|..+.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 45799999999999999988854 253 58888865
No 225
>PRK07574 formate dehydrogenase; Provisional
Probab=49.22 E-value=41 Score=35.82 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+..|.+++|.|+|.|..|..||+.+... |+ +++.+|+..
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~ 225 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHR 225 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC
Confidence 3458999999999999999999998643 54 477777654
No 226
>PRK08291 ectoine utilization protein EutC; Validated
Probab=49.13 E-value=49 Score=33.85 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 369 gllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
|.+++..... -..++++++|+|..|..++..+... .++ ++|.++|+
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R 165 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWAR 165 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcC
Confidence 4455554432 2347999999999988887766543 233 35777665
No 227
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=49.09 E-value=22 Score=39.63 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=28.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
..|+|+|||.+|+.+|-.|... |. ++.++|++..+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-----G~-------~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-----GW-------QVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-----CC-------eEEEEecCCCc
Confidence 4799999999999999988542 64 59999987533
No 228
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=48.92 E-value=15 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.394 Sum_probs=24.7
Q ss_pred cchhhhHHHHHHHHHHHHH---hcCCCeeeEEeeC
Q 012532 305 AIGQEYAELLHEFMTAVKQ---NYGERILIQFEDF 336 (461)
Q Consensus 305 ~~geeY~~fvdEfv~av~~---~fGp~~lIqfEDF 336 (461)
.+.++||.|+|+|+..|.+ .||....-+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 5679999999999998877 4666555666665
No 229
>PRK06487 glycerate dehydrogenase; Provisional
Probab=48.89 E-value=48 Score=33.95 Aligned_cols=66 Identities=24% Similarity=0.226 Sum_probs=44.6
Q ss_pred CCCceeccCc---chHHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcchHHHHHHHHH
Q 012532 350 TTHLVFNDDI---QGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 350 ~~~~~FNDDI---QGTaaV~LAgllaAlrv~------------------------g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
..+.+.|--- +.+|=-+++-+|+..|-. +..|.++++.|+|.|..|-.||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 3455555321 345556677777765532 2358899999999999999999998
Q ss_pred HHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 403 ALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 403 ~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
. ++ |+ +|..+|+.
T Consensus 168 ~-~f----gm-------~V~~~~~~ 180 (317)
T PRK06487 168 E-AF----GM-------RVLIGQLP 180 (317)
T ss_pred h-hC----CC-------EEEEECCC
Confidence 5 32 54 46667764
No 230
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=48.81 E-value=21 Score=37.66 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
.++|+|||.||+.+|..+..
T Consensus 3 DvvIIGaG~aGlsaA~~La~ 22 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ 22 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh
Confidence 58999999999999988863
No 231
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.74 E-value=22 Score=38.01 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
++++|++|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999864
No 232
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=48.63 E-value=22 Score=35.93 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=25.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
...|+|+|||.+|+..|-.+.. .|+ ++.++|++-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 4579999999999999976643 365 477777653
No 233
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=48.47 E-value=15 Score=38.57 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
||||+|||.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998642 11 1368888876
No 234
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=48.46 E-value=20 Score=39.12 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.++|+|||.||+..|..+... |. ++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g~-------~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----KL-------DTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEecCC
Confidence 689999999999999877542 53 588888653
No 235
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=48.41 E-value=21 Score=42.64 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=27.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999988864 264 58888865
No 236
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=48.37 E-value=15 Score=37.45 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.++||+|+|.||+..|+.|... + ..-+|.+++...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988542 1 123688887654
No 237
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=48.31 E-value=22 Score=38.64 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=29.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
||+++|||..|+-+++.++.+ |+...+ ..+|.++|.+=+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCCCc
Confidence 689999999999999999876 652111 268999997533
No 238
>PTZ00117 malate dehydrogenase; Provisional
Probab=48.30 E-value=27 Score=35.72 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..||.|+|||..|.++|.+++.. |+. .+.|+|.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-----~~~------~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-----NLG------DVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-----CCC------eEEEEECC
Confidence 345999999999999999877542 542 49999974
No 239
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=48.25 E-value=28 Score=35.57 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
++..|+|+|||.+|+.+|-.|... .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 455799999999999999888653 253 36899998653
No 240
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.24 E-value=33 Score=35.26 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 363 aaV~LAgllaAlrv~g~~L~d~rivf~GAGs-AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.-+|-+|++..++-.+.+|++.+++++|-|. .|..+|.||.. .|. .+.+|+|+
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~a-------tVtv~hs~ 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AGC-------TVTVCHRF 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------eEEEEECC
Confidence 4678889999999999999999999999998 99999998853 243 47777775
No 241
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=48.06 E-value=22 Score=37.19 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.++|+|||.||+..|..+... |. ++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G~-------~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----GL-------KVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEec
Confidence 489999999999999888642 53 6888987
No 242
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=47.94 E-value=21 Score=37.32 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
-|+|+|||.||+..|..|..+ |++ +.++|+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~~-------vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GRE-------VTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----CcE-------EEEEEcCC
Confidence 489999999999999988654 764 77888643
No 243
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=47.80 E-value=22 Score=38.82 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
++|-|+|||..|.|||..++.+ |. .++++|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-----G~-------~V~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-----GH-------TVLLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5799999999999999998654 65 4777775
No 244
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=47.76 E-value=37 Score=34.90 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=33.0
Q ss_pred cCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 357 DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 357 DDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
|+..+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+. +..|. ++|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a-----~~~Ga------~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALA-----KLLGA------SVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHH-----HHcCC------ceEEEeCC
Confidence 3344443334444433422222223333999999999998773332 22364 47998885
No 245
>PLN02568 polyamine oxidase
Probab=47.76 E-value=12 Score=41.04 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 246
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=47.67 E-value=22 Score=37.38 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++|+|||+||+..|..+.. .|+ ++-++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g~-------~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LGA-------SVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 7999999999999888764 264 68888875
No 247
>PRK11445 putative oxidoreductase; Provisional
Probab=47.47 E-value=18 Score=36.73 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
.|+|+|||.||...|..+..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999987754
No 248
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=47.46 E-value=19 Score=36.53 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
.|+|+|||.||+..|-.|..
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988764
No 249
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=47.41 E-value=23 Score=37.30 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=23.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
|||+|+|.||+.-|-..+. .|+ ++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999998876644 375 69999998865
No 250
>PRK14694 putative mercuric reductase; Provisional
Probab=47.27 E-value=26 Score=37.09 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=26.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+-.++|+|||+||+..|..+... |+ ++-++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g~-------~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----GA-------RVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEEcc
Confidence 345799999999999999888653 53 58888864
No 251
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=47.13 E-value=22 Score=37.80 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.+|++|=||++|||..|--+++||+.. |+ ++|-+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999765 65 57888886654
No 252
>PRK06834 hypothetical protein; Provisional
Probab=47.10 E-value=26 Score=37.80 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=26.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+..|+|+|||.+|+-.|-.|... |+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-----G~-------~v~vlEr~ 35 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-----GV-------DVAIVERR 35 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457899999999999999887553 65 35666654
No 253
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=47.08 E-value=20 Score=35.95 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=24.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
|.|+|||..|.++|..++.. |+ + .++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~-----~l----~--eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-----EL----G--DVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-----CC----c--EEEEEeCC
Confidence 57999999999999877532 54 1 59999975
No 254
>PLN03139 formate dehydrogenase; Provisional
Probab=47.02 E-value=50 Score=35.23 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=31.5
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+..
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~ 232 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLK 232 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCC
Confidence 4568999999999999999999999642 54 477788754
No 255
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=47.00 E-value=24 Score=34.42 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~ 405 (461)
||.|+|||+.|..+|..+..+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~ 22 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA 22 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999988653
No 256
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=46.97 E-value=19 Score=33.05 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+.-.+|||.|+|.+|.|.|+++..
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~ 41 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKG 41 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhH
Confidence 556899999999999999998865
No 257
>PRK09897 hypothetical protein; Provisional
Probab=46.44 E-value=25 Score=38.93 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=26.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+|+|+|||.+|+.+|..|+.. + ..-+|.++|...
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~~ 36 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQAD 36 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecCC
Confidence 799999999999999999752 2 123699999843
No 258
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=46.37 E-value=10 Score=37.53 Aligned_cols=26 Identities=46% Similarity=0.804 Sum_probs=18.5
Q ss_pred EEEEecCceeeccCCCCCCccccchhhhh
Q 012532 236 VIVVTDGERILGLGDLGCHGMGIPVGKLS 264 (461)
Q Consensus 236 viVVTDGerILGLGDlG~~GmgI~iGKl~ 264 (461)
++|||||+|||-.--. |=.|||-|+-
T Consensus 51 ~fi~TDg~~IlavDt~---gy~ipiRKSR 76 (214)
T PF12227_consen 51 CFIVTDGERILAVDTI---GYKIPIRKSR 76 (214)
T ss_pred eEEEecCCceEEEEec---CCCceeeecc
Confidence 8999999999975333 3456666653
No 259
>PRK05868 hypothetical protein; Validated
Probab=46.31 E-value=25 Score=36.02 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~ 404 (461)
.+|+|+|||.||+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999877643
No 260
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=46.28 E-value=40 Score=31.68 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeeeEEee-CCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCC-----
Q 012532 308 QEYAELLHEFMTAVKQNYGERILIQFED-FANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSL----- 381 (461)
Q Consensus 308 eeY~~fvdEfv~av~~~fGp~~lIqfED-F~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L----- 381 (461)
+.+.++.+ -+..+-+.|.|+.++ +|+ |-+.|...-+.-- | +-+.++.|+...|.|+
T Consensus 44 ~Rl~~I~~-~l~~~i~~~~Pd~va-iE~~f~~~n~~sa~~l~-----------~-----arGvi~la~~~~~ipv~ey~P 105 (164)
T PRK00039 44 ERLKQIYD-GLSELIDEYQPDEVA-IEEVFFNKNPQSALKLG-----------Q-----ARGVAILAAAQRGLPVAEYTP 105 (164)
T ss_pred HHHHHHHH-HHHHHHHHhCCCEEE-EehhhhccChHHHHHHH-----------H-----HHHHHHHHHHHcCCCEEEECH
Confidence 44555444 444555678787666 555 4444433222110 0 2234444555556554
Q ss_pred CCceEEEeCcchHHH
Q 012532 382 ADQRFLFLGAGEAGT 396 (461)
Q Consensus 382 ~d~rivf~GAGsAgi 396 (461)
+..|-.+.|-|.|.-
T Consensus 106 ~~VKk~vtG~G~A~K 120 (164)
T PRK00039 106 LQVKKAVVGYGRADK 120 (164)
T ss_pred HHhhhhhcCCCCCCH
Confidence 445777899998876
No 261
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.24 E-value=29 Score=36.21 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+++.+++|.|+|..|.++|+.+..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~ 26 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK 26 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH
Confidence 567899999999999999888764
No 262
>PLN02852 ferredoxin-NADP+ reductase
Probab=46.13 E-value=15 Score=40.28 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=31.6
Q ss_pred HhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 376 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 376 v~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
....+-...||+|+|||.||+..|..+.... .|. +|.++|+.
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g~-------~Vtv~E~~ 60 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DGA-------RVDIIERL 60 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhhC---CCC-------eEEEEecC
Confidence 3444556689999999999999999886531 243 68888876
No 263
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=46.02 E-value=25 Score=38.01 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.8
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 012532 383 DQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~ 404 (461)
...|+|+|||.+|+..|-.|..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 3579999999999999987754
No 264
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.98 E-value=35 Score=35.06 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEeCcchH-HHHHHHHHHH
Q 012532 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEA-GTGIAELIAL 404 (461)
Q Consensus 362 TaaV~LAgllaAlrv~g~~L~d~rivf~GAGsA-giGIA~li~~ 404 (461)
-.-+|-.|++.-++-.+.++++.+++++|.|.. |.-+|.+|..
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~ 180 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ 180 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH
Confidence 346778888999999999999999999999988 9999999854
No 265
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.93 E-value=34 Score=35.14 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHH
Q 012532 363 ASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALE 405 (461)
Q Consensus 363 aaV~LAgllaAlrv~g~~L~d~rivf~GA-GsAgiGIA~li~~~ 405 (461)
.-+|-+|++.=++-.+.+++..+++|+|. |..|.-+|.+|..+
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~ 181 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK 181 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC
Confidence 46777888888999999999999999999 99999999999753
No 266
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=45.91 E-value=21 Score=38.33 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=28.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
..+||||+|+|-+|+-.|..+.... + + -+|.+||++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~------~--~--~~itLVd~~ 37 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL------P--D--VEITLVDRR 37 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC------C--C--CcEEEEeCC
Confidence 3579999999999999999886542 1 1 258999974
No 267
>PRK06126 hypothetical protein; Provisional
Probab=45.87 E-value=28 Score=37.46 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
-.+.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 345789999999999999977754 376 366677553
No 268
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.60 E-value=28 Score=34.37 Aligned_cols=31 Identities=35% Similarity=0.610 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
++|.|+|+|..|.+||..++.. |. +++++|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeC
Confidence 5899999999999999988543 54 5778884
No 269
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=45.52 E-value=71 Score=29.81 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=83.4
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecC--ceeeccCCCCCC--ccccchhhhhhHhhhcCCCCCCeeeE
Q 012532 205 IYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDG--ERILGLGDLGCH--GMGIPVGKLSLYTALGGIRPSACLPV 280 (461)
Q Consensus 205 i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDG--erILGLGDlG~~--GmgI~iGKl~LYta~gGI~P~~~LPV 280 (461)
+-+++.|+-++.-|.....+.++.+-..+|.||.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46679999999999888888888888888988887555 111111112222 35556666666555544 445
Q ss_pred EeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCee-eE---EeeCCCccHHHHHHHHcCCC---c
Q 012532 281 TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL-IQ---FEDFANHNAFDLLEKYGTTH---L 353 (461)
Q Consensus 281 ~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~l-Iq---fEDF~~~nAf~lL~rYr~~~---~ 353 (461)
++=.|.-+ .....+.++-|.+++++ ++ ++= +. +.++....+.+.++++-... +
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 185 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YP-GVEIVDEYEYTDWDPEDARQAIENLLQANPVDA 185 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CT-TEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cc-eeeeeeeeeccCCCHHHHHHHHHHhhhcCCceE
Confidence 54444311 12233456777778777 63 432 22 23567777776555553222 2
Q ss_pred eeccCcchHHHHHHHHHHHHHHHhCC
Q 012532 354 VFNDDIQGTASVVLAGLISAMKFLGG 379 (461)
Q Consensus 354 ~FNDDIQGTaaV~LAgllaAlrv~g~ 379 (461)
+|.- ....+-|++.|++-.|+
T Consensus 186 i~~~-----~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIAC-----NDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEES-----SHHHHHHHHHHHHHTTC
T ss_pred EEeC-----CChHHHHHHHHHHHcCC
Confidence 3322 23334477888888777
No 270
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=45.51 E-value=25 Score=35.22 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.|+|+|||-+|+.+|-.|.+. |. ++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G~-------~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----GL-------SVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCCC
Confidence 489999999999999888642 53 588888764
No 271
>PRK10015 oxidoreductase; Provisional
Probab=45.30 E-value=24 Score=37.25 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
-.++|+|||.||...|-.+.. .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988754 365 477777653
No 272
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=45.15 E-value=27 Score=36.46 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-.+||+|||+||+..|..+.+. |+ ++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g~-------~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----GW-------RVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 4689999999999999888653 53 58889975
No 273
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=45.08 E-value=31 Score=34.45 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccc
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~ 431 (461)
...+|+|+|||-+|+.+|-.|... |. +|.++|++..-.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccCC
Confidence 357899999999999999888653 63 799999877643
No 274
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=44.92 E-value=21 Score=36.93 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=33.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
++|..-+|+++|+|..|.-+|+-|+.+ |+ ++|.++|.+-
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc
Confidence 578899999999999999999999776 76 5788888654
No 275
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=44.82 E-value=21 Score=40.64 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.-+..+|+|+|||.||+..|-.|..
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r 102 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKK 102 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHh
Confidence 3556789999999999999988765
No 276
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=44.80 E-value=24 Score=40.19 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|.|+|||..|.|||-.++.+ |+ +++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-----G~-------~V~l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-----GT-------PIVMKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5799999999999999988764 76 47778853
No 277
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=44.58 E-value=27 Score=36.86 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
|++|+|+|+||+..|..+.+. |. ++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g~-------~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----GK-------NVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 799999999999999887652 53 68899975
No 278
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=44.44 E-value=28 Score=35.51 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+|+|+|||-+|+.+|..+... |. +|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g~-------~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----GH-------EVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 689999999999999887532 53 58888886
No 279
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=44.39 E-value=32 Score=38.38 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=27.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
...+++|+|+|.||+..|..+... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999888643 64 477777653
No 280
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=44.37 E-value=26 Score=36.43 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+++-++|||..|-|||..++.+ |+ .+++.|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~-----G~-------~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALA-----GY-------DVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhc-----CC-------ceEEEeCC
Confidence 5889999999999999999764 65 37778875
No 281
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=44.19 E-value=28 Score=35.87 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=24.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+|+|+|||.||+..|-.|.. .|++ +.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~~-------v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGID-------NVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCCC-------EEEEECCC
Confidence 579999999999999977643 3763 55666543
No 282
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=44.17 E-value=29 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.-.+||+|||+||+..|..+... |. ++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G~-------~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----GL-------KTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEcc
Confidence 34689999999999999887543 64 68899974
No 283
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=44.02 E-value=17 Score=40.07 Aligned_cols=44 Identities=34% Similarity=0.332 Sum_probs=32.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCC--ChhhhcCcE-----EEEcCCCcccc
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNM--PLEETRKKI-----WLVDSKGLIVS 432 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gl--s~eeAr~~i-----~lvDs~GLi~~ 432 (461)
+||+|+|||-||++.|..|+++ |. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999875 64 444565442 12667777664
No 284
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=43.69 E-value=31 Score=36.13 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=25.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-.+||+|||.||+..|..+... | .++-++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999877542 5 368888873
No 285
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=43.65 E-value=29 Score=37.48 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.+.+|+|+|||.+|+..|..|..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999988754
No 286
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=43.49 E-value=69 Score=32.00 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 366 ~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
..+..+.|+...+..-..+++++.|+|..|..++.+.
T Consensus 161 ~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~la 197 (361)
T cd08231 161 ALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAA 197 (361)
T ss_pred HHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHH
Confidence 3344455666666555789999999886666655443
No 287
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=43.29 E-value=35 Score=29.91 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=24.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
|+|+|||+.|.-+|-.|.++ |. ++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g~-------~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----GH-------DVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----TC-------EEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----CC-------ceEEEEccc
Confidence 78999999999999888653 43 477777765
No 288
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=43.09 E-value=30 Score=37.23 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
+++++|||+|+|..|+-||..|...
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~ 226 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV 226 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh
Confidence 6899999999999999999988654
No 289
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=43.01 E-value=37 Score=34.05 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=31.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHH--HhCCCChhhhcCcEEEEcCCCc
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEIS--KQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~--~~~Gls~eeAr~~i~lvDs~GL 429 (461)
+..+|+++|+|.-|.-+++.|+..-. +.-|.+ .. -+|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~--~g-~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP--GG-LAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC--CC-CEEEEECCCEE
Confidence 56799999999999999999987510 001211 00 17999997654
No 290
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=42.85 E-value=36 Score=36.38 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=26.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+|+|+|+|.||+..|..+.. .|. ++.++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 56899999999999999888754 254 36677765
No 291
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=42.68 E-value=27 Score=35.62 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=23.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.|+|+|||.+|...|-.|.. .|+ ++.++|+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~-----~G~-------~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ-----KGI-------KTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc-----CCC-------eEEEecCC
Confidence 58999999999999977643 375 46677753
No 292
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=42.67 E-value=22 Score=35.83 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.0
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 012532 383 DQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~ 404 (461)
...|+|+|||.||...|-+|..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~ 24 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSR 24 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhh
Confidence 4579999999999999988865
No 293
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.53 E-value=37 Score=35.67 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+...+|+|+|+|.+|+++|+.+..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~ 26 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRK 26 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH
Confidence 567899999999999999888753
No 294
>PRK07190 hypothetical protein; Provisional
Probab=42.49 E-value=37 Score=36.66 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=24.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
...|+|+|||.+|+-.|-.+.. .|+ ++.++|+.-
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCCC
Confidence 3579999999999988865533 375 366777653
No 295
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=42.40 E-value=72 Score=32.10 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=17.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~ 404 (461)
..++++++|||..|+..+.++..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~ 185 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQ 185 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH
Confidence 57899999999877766665543
No 296
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.22 E-value=49 Score=34.14 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHH
Q 012532 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIAL 404 (461)
Q Consensus 362 TaaV~LAgllaAlrv~g~~L~d~rivf~GAGs-AgiGIA~li~~ 404 (461)
-.-+|-.|++..++-.+.+|+..+++++|.+. .|..+|.+|..
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~ 186 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN 186 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH
Confidence 34678899999999999999999999999998 89999999864
No 297
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=42.20 E-value=55 Score=36.24 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=19.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIA 403 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~ 403 (461)
.....+++|+|||.+|.+.+....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak 185 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAG 185 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHH
Confidence 345899999999999998876654
No 298
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=42.14 E-value=53 Score=33.07 Aligned_cols=41 Identities=27% Similarity=0.480 Sum_probs=29.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.++++|+|+|.+|+-+|..|.....+ .|. +.+|.+++...+
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~-~g~-----~~~V~li~~~~~ 185 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPK-RGL-----RGQVTLIAGASL 185 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHh-cCC-----CceEEEEeCCcc
Confidence 46899999999999999999776543 353 346777744333
No 299
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=42.00 E-value=34 Score=35.10 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
..|+|+|||.+|+.+|-.+.... .| .++.++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCCC
Confidence 46999999999999998886531 14 3688999863
No 300
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=41.87 E-value=19 Score=38.55 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEIS 407 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~ 407 (461)
+..++|++|.|++|+|+|..+..-+-
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~ 63 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLG 63 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcC
Confidence 56799999999999999999977653
No 301
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=41.74 E-value=35 Score=35.67 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=31.6
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-.+.+..||.++|+|..|+++|-.|+.- |++ +++.++|-+
T Consensus 15 ~~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~ 54 (332)
T KOG1495|consen 15 EKEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVN 54 (332)
T ss_pred cccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecC
Confidence 3456678999999999999999988653 774 468889853
No 302
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.56 E-value=1.4e+02 Score=26.03 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=43.4
Q ss_pred CCCCccccchhhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCee
Q 012532 251 LGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL 330 (461)
Q Consensus 251 lG~~GmgI~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~l 330 (461)
.|..|-...--+..+-......+|+. |+|-+|||. .++ +.+-++|.+-+.+|++.++..+ |++.
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~ND------~~~------~~~~~~~~~~~~~~i~~i~~~~-p~~~ 81 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTND------LVL------NRDPDTAPDRLRALIDQMRAAN-PDVK 81 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCcc------ccc------CCCHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 34444444444444434445566654 678889974 322 1467889998999999999887 8776
Q ss_pred eEEe
Q 012532 331 IQFE 334 (461)
Q Consensus 331 IqfE 334 (461)
|-+-
T Consensus 82 ii~~ 85 (157)
T cd01833 82 IIVA 85 (157)
T ss_pred EEEE
Confidence 6654
No 303
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=41.51 E-value=36 Score=35.67 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
...++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 45699999999999999887543 5 3788999853
No 304
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=41.42 E-value=66 Score=34.26 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=47.6
Q ss_pred cCCCceeccCc---chHHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 012532 349 GTTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEIS 407 (461)
Q Consensus 349 r~~~~~FNDDI---QGTaaV~LAgllaAlrv------------------~g~~L~d~rivf~GAGsAgiGIA~li~~~m~ 407 (461)
+..++++|--- ..+|=-+++.+|++.|- .+..|.+.++.|+|.|..|..+|+.+...
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-- 173 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL-- 173 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC--
Confidence 35677777432 33555568888877653 24568999999999999999999988543
Q ss_pred HhCCCChhhhcCcEEEEcCC
Q 012532 408 KQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 408 ~~~Gls~eeAr~~i~lvDs~ 427 (461)
|+ +++.+|..
T Consensus 174 ---Gm-------~V~~~d~~ 183 (409)
T PRK11790 174 ---GM-------RVYFYDIE 183 (409)
T ss_pred ---CC-------EEEEECCC
Confidence 65 47777753
No 305
>PTZ00188 adrenodoxin reductase; Provisional
Probab=41.07 E-value=47 Score=36.90 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC----CccccC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIVSS 433 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~----GLi~~~ 433 (461)
+..||+|+|||.||+-.|..++.. .|. ++-++|+. ||+..+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecCCCCccEEEEe
Confidence 357999999999999999976543 243 47777765 565443
No 306
>PRK13748 putative mercuric reductase; Provisional
Probab=40.99 E-value=30 Score=37.29 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-.++|+|||+||+..|..+... |+ ++.++|++
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~-----G~-------~v~lie~~ 130 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQ-----GA-------RVTLIERG 130 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 46799999999999999888653 53 68888865
No 307
>PRK13984 putative oxidoreductase; Provisional
Probab=40.92 E-value=35 Score=37.50 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=27.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+++|+|||.||+..|..+... |. ++.++|+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-----G~-------~v~vie~~ 315 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-----GY-------EVTVYESL 315 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 567899999999999999998642 64 47777764
No 308
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.80 E-value=39 Score=33.91 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 012532 383 DQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~ 405 (461)
..||.|+|+|..|.++|..+..+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~ 26 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN 26 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC
Confidence 45899999999999999999764
No 309
>PRK07208 hypothetical protein; Provisional
Probab=40.74 E-value=37 Score=35.67 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+..+++|+|||-||+..|..|..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~ 25 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLK 25 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHH
Confidence 34679999999999999988865
No 310
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=40.66 E-value=26 Score=35.88 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=34.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcccc
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~ 432 (461)
+|++++|+++|.|-.|-=+++.|+.. |+ .+|.++|-+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRs-----Gi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARS-----GI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHc-----CC------CeEEEEeccccccc
Confidence 58899999999998888888777653 76 68999998776544
No 311
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.53 E-value=38 Score=37.82 Aligned_cols=54 Identities=30% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc--ccCCCcCCchhchhccc
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAH 447 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi--~~~R~~~l~~~k~~fA~ 447 (461)
.+--++|+|+|..|+|||.-++. .|+ ++.||+++-+- |++|..+|=|-=..|+.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~ 66 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLE 66 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhh
Confidence 55678999999999999998865 388 48899988776 56665556665556654
No 312
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=40.22 E-value=76 Score=36.20 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.+|.|+|||..|.|||-.++.. .|+ .++++|.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~----~G~-------~V~l~d~ 341 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK----AGL-------PVRIKDI 341 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH----cCC-------eEEEEeC
Confidence 6899999999999999987622 365 4777775
No 313
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=40.22 E-value=32 Score=39.47 Aligned_cols=31 Identities=35% Similarity=0.526 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
++|.|+|||..|.|||..++.+ |+ .+.++|.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-----G~-------~V~l~d~ 366 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-----GL-------KTVLKDA 366 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-----CC-------cEEEecC
Confidence 6899999999999999988654 65 3667774
No 314
>PRK14852 hypothetical protein; Provisional
Probab=40.10 E-value=28 Score=41.53 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+=+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~V 367 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDAY 367 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEe
Confidence 578999999999999888898888765 76 58999997543
No 315
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=40.08 E-value=27 Score=29.62 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=25.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+|++.++|++|+|..|.-=+++++++ | .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999999888777543 3 2566666653
No 316
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=39.98 E-value=35 Score=40.48 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=27.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 467999999999999999988653 64 57788875
No 317
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=39.86 E-value=37 Score=40.65 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++-+..||+|+|||.||+..|..+.. .|. ++.++|..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~-----~Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLR-----SGH-------NVTAIDGL 415 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEccc
Confidence 44578899999999999999999864 264 47788863
No 318
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=39.75 E-value=26 Score=36.68 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=30.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh---CCCChhhhcC----cEEEEcCCCcc
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQ---TNMPLEETRK----KIWLVDSKGLI 430 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~---~Gls~eeAr~----~i~lvDs~GLi 430 (461)
++|+|+|||-||+..|..|.++-... .-++.=||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 37999999999999999997642100 0245566665 45555545543
No 319
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=39.72 E-value=68 Score=35.23 Aligned_cols=66 Identities=26% Similarity=0.278 Sum_probs=44.9
Q ss_pred CCCceeccC---cchHHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 012532 350 TTHLVFNDD---IQGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 408 (461)
Q Consensus 350 ~~~~~FNDD---IQGTaaV~LAgllaAlrv------------------~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~ 408 (461)
..+++.|-- -+.+|=-++|.+|+..|- .|..|.++++.|+|.|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 345555532 124555567777766542 24578999999999999999999998532
Q ss_pred hCCCChhhhcCcEEEEcCC
Q 012532 409 QTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 409 ~~Gls~eeAr~~i~lvDs~ 427 (461)
|+ +++.+|..
T Consensus 161 --G~-------~V~~~d~~ 170 (525)
T TIGR01327 161 --GM-------KVLAYDPY 170 (525)
T ss_pred --CC-------EEEEECCC
Confidence 54 47777763
No 320
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=39.16 E-value=24 Score=36.40 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.9
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~ 405 (461)
+|+|+|||.||+..|..|..+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999998754
No 321
>PLN02985 squalene monooxygenase
Probab=39.02 E-value=38 Score=36.96 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=25.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+..|+|+|||.||...|-.|.. .|. ++.++|++
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~-----~G~-------~V~vlEr~ 75 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK-----DGR-------RVHVIERD 75 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEECc
Confidence 34589999999999999977753 364 47777764
No 322
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=38.93 E-value=80 Score=32.59 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHH
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIA 403 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~ 403 (461)
|..|.++++.|+|.|..|..||+.+.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~ 165 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAH 165 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHH
Confidence 45689999999999999999999875
No 323
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=38.93 E-value=28 Score=36.46 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=26.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
..+..+|||+|+|.||+..|+.|. + . .-+|.++|.+-
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCCC
Confidence 345679999999999999877652 1 1 12588887643
No 324
>PLN00106 malate dehydrogenase
Probab=38.81 E-value=45 Score=34.57 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GA-GsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
|.-+.|+|..|..-. .||+|+|| |..|.-+|..++. .++ ...+.|+|.+-
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~ 54 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN 54 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC
Confidence 345678888877655 59999999 9999999998753 244 24688999755
No 325
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=38.76 E-value=2.1e+02 Score=30.85 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=28.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
-|.-|+.+|.|+--.||+.-...... .|. ..-+|+.|+..|-
T Consensus 254 pD~Vv~~vG~Gg~~aGi~~~f~~~~~--~g~----~~~riiaVEp~~~ 295 (427)
T PRK12391 254 PDVVIGCVGGGSNFAGLAFPFLGDKL--EGK----KDTRFIAVEPAAC 295 (427)
T ss_pred CCEEEEecCchHHHHHHHHHHHHHHh--cCC----CCceEEEEeeccc
Confidence 48899999999988999874433221 242 1237888888663
No 326
>PLN02697 lycopene epsilon cyclase
Probab=38.71 E-value=34 Score=37.82 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~ 404 (461)
-.|+|+|||.||+..|..+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak 129 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK 129 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 358999999999999877653
No 327
>PTZ00367 squalene epoxidase; Provisional
Probab=38.62 E-value=84 Score=35.04 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=28.8
Q ss_pred HHhCCCC---CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 375 KFLGGSL---ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 375 rv~g~~L---~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++..+|. .+-.|+|+|||.||...|..+.. .|. ++.++++.
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar-----~G~-------~V~VlEr~ 65 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK-----QGR-------KVLMLERD 65 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHHh-----cCC-------EEEEEccc
Confidence 3445565 44579999999999999988754 364 46666654
No 328
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=38.48 E-value=40 Score=35.76 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
--++|+|||+||+..|..+.. .|. ++-++|+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~-----~G~-------~V~liE~~ 34 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAE-----HGA-------KALLVEAK 34 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------cEEEeccc
Confidence 468999999999999988654 364 68888875
No 329
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=38.43 E-value=35 Score=38.25 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
-.|||+|+|..|.+||..++.. |+ ++.++|+.-
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~r-----Gl-------~V~LvE~~d 104 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATR-----GL-------RVGLVERED 104 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEeccc
Confidence 4699999999999999998653 76 488999863
No 330
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=38.42 E-value=40 Score=33.85 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.||.|+|+|..|..+|..+..+ |. +++++|+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G~-------~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----GA-------DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----CC-------cEEEEecH
Confidence 4799999999999999998654 42 46666654
No 331
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=38.34 E-value=24 Score=31.97 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=19.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.+++++|+|+|+|..|+-+|..|..
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~ 188 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAK 188 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTT
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHh
Confidence 6788999999999999988877643
No 332
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=38.20 E-value=91 Score=30.79 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 368 AgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
+..+.|+...+ ...+++++|.|+|+.|...+.+.
T Consensus 150 ~ta~~~l~~~~-~~~g~~vlV~G~G~vG~~~~~~a 183 (339)
T cd08239 150 GTAYHALRRVG-VSGRDTVLVVGAGPVGLGALMLA 183 (339)
T ss_pred HHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHH
Confidence 33445554433 33488999999987666655443
No 333
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=38.04 E-value=70 Score=35.55 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=29.9
Q ss_pred cCcchHHHHHHHHHHHHHHHhC-----CCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 357 DDIQGTASVVLAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 357 DDIQGTaaV~LAgllaAlrv~g-----~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
..|.|-.||..|+-.-.-...| ......|++|+|+|.+|+..+..+..
T Consensus 133 a~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~ 185 (511)
T TIGR00561 133 ANIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS 185 (511)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 3456666665553322222222 13456899999999999998877644
No 334
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.85 E-value=24 Score=38.36 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
.-.+++|+|||+||+..|+-|...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC
Confidence 357899999999999999988764
No 335
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.84 E-value=39 Score=35.46 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.8
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
||+|+|+|.+|+..|+.+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~ 21 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA 21 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH
Confidence 79999999999999888764
No 336
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=37.81 E-value=36 Score=36.35 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+|+|+|||+||+-.|-.++. .|. ++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g~-------~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KGA-------RVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEeCC
Confidence 58999999999988877743 354 57788876
No 337
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.80 E-value=45 Score=33.84 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
||.|+|+|..|..+|..++.. |+ ...++++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~-----~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GL-----ASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CC-----CCEEEEEECC
Confidence 799999999999999877542 54 3579999974
No 338
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.76 E-value=42 Score=33.83 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=19.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~ 405 (461)
.||.|+|+|+.|.++|..+...
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~ 26 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK 26 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC
Confidence 3799999999999999998754
No 339
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=37.57 E-value=28 Score=41.57 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=34.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
++|++.+|+|+|+|..|.-||+.|+.+ |+ ++|.++|.+-+
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~v 59 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEKC 59 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCee
Confidence 568889999999999999999999876 76 58999997643
No 340
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=37.47 E-value=45 Score=35.48 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-.++|+|||+||+..|..+... |. ++.++|.+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G~-------~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----GL-------KVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 4689999999999999886543 53 68889864
No 341
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.26 E-value=43 Score=35.55 Aligned_cols=25 Identities=8% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
-+...||+|+|.|-.|+++|++|..
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~ 35 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVK 35 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHH
Confidence 3556799999999999999999864
No 342
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=37.14 E-value=37 Score=37.10 Aligned_cols=39 Identities=15% Similarity=0.401 Sum_probs=30.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
+..||+|+||||. ..++++...+.+...++ ...|||+|-
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~----~~el~L~Di 40 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELP----VRELALYDI 40 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCC----cceEEEEeC
Confidence 4568999999997 45778887777766666 368999995
No 343
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=37.05 E-value=39 Score=36.03 Aligned_cols=34 Identities=32% Similarity=0.613 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
.++|+|||-+|.=||+.+ +. .| +++.+||++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a-~~----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVA-AQ----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHH-HH----cC-------CEEEEEeccccC
Confidence 589999999999999933 22 24 578888776555
No 344
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=37.04 E-value=94 Score=31.61 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=16.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHH
Q 012532 379 GSLADQRFLFLGAGEAGTGIAEL 401 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~l 401 (461)
.--.+++++|+|+|+.|...+.+
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~ 204 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQG 204 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHH
Confidence 33457899999998766655443
No 345
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=37.00 E-value=95 Score=31.44 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=24.2
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
..-..+++++|+|+|+.|...+.+. .+ .|. ++++.+|+
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a-~~----~G~------~~Vi~~~~ 217 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGA-KI----AGA------SRIIGVDI 217 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH-HH----cCC------CeEEEEeC
Confidence 4445678999999987777655533 22 364 25666665
No 346
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=36.84 E-value=83 Score=30.96 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhC---------CCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccC
Q 012532 364 SVVLAGLISAMKFLG---------GSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS 433 (461)
Q Consensus 364 aV~LAgllaAlrv~g---------~~L~d~rivf~GAG-sAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~ 433 (461)
-+|-.|++.=|+-.+ .+++.++++++|.+ ..|.-+|.||.. .|. .+..||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~A-------tVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DGA-------RVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEEecCcccccc
Confidence 455566666666654 48999999999986 467777777743 253 48899999988765
Q ss_pred CC
Q 012532 434 RL 435 (461)
Q Consensus 434 R~ 435 (461)
+.
T Consensus 102 ~~ 103 (197)
T cd01079 102 RG 103 (197)
T ss_pred cc
Confidence 53
No 347
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=36.83 E-value=53 Score=29.88 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=23.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.+|-|+|.|..|.+||+.|... |. +++..|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEES
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeecc
Confidence 4899999999999999999543 64 4777774
No 348
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=36.03 E-value=41 Score=36.52 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=24.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+|+|+|||-||+..|..++. .|+ ++.+++.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr-----~G~-------~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ-----AGV-------PVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEeccc
Confidence 68999999999999988864 264 466666443
No 349
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=36.00 E-value=49 Score=35.10 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=19.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHH
Q 012532 383 DQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~ 405 (461)
+++++|+|||-+|+..|-.|..+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~ 23 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKR 23 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC
Confidence 46899999999999999888653
No 350
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=35.94 E-value=86 Score=31.94 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=21.0
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 371 laAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
+.|++..+..-.+++++|.|+|..|...+.+.
T Consensus 172 ~~al~~~~~~~~g~~VlV~G~G~vG~~avq~A 203 (360)
T PLN02586 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIG 203 (360)
T ss_pred HHHHHHhcccCCCCEEEEECCCHHHHHHHHHH
Confidence 44554444434678999999987777655443
No 351
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=35.83 E-value=2.4e+02 Score=32.13 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=60.2
Q ss_pred ccccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCC-
Q 012532 302 QKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGS- 380 (461)
Q Consensus 302 ~~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~- 380 (461)
-+|++=+|-.+.|.+=+..+++.|||+.+....- ..+....+.++-..+-+-|-|.+++-+ -.++..+.....|..
T Consensus 114 ~~~iSWdEAl~~ia~~l~~i~~~~G~~~i~~~~~--~~~~~~~~~~~~~~~Gs~n~~~~~~~c-~~~~~~~~~~~~G~~~ 190 (759)
T PRK15488 114 WQEISWDEAYQEIAAKLNAIKQQHGPESVAFSSK--SGSLSSHLFHLATAFGSPNTFTHASTC-PAGYAIAAKVMFGGKL 190 (759)
T ss_pred eEEeCHHHHHHHHHHHHHHHHHHhCCceEEeecC--CCcHHHHHHHHHHHcCCCCCCCccccc-cchhhhhHHhhcCCCc
Confidence 4677777777777777888899999999875442 222222333332222222333332211 111112222233432
Q ss_pred ---CCC-ceEEEeCcchHH---HHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 381 ---LAD-QRFLFLGAGEAG---TGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 381 ---L~d-~rivf~GAGsAg---iGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+.+ .-||++|+-.+. +.-.+.+..+. ++.| .+|+++|..-
T Consensus 191 ~~D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~-~~~G-------~kiivIDPr~ 237 (759)
T PRK15488 191 KRDLANSKYIINFGHNLYEGINMSDTRGLMTAQ-MEKG-------AKLVVFEPRF 237 (759)
T ss_pred cCCHhhCcEEEEeccChHhcCCcHHHHHHHHHH-HhCC-------CEEEEECCCC
Confidence 222 578999988764 22334454443 2234 3799999743
No 352
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=35.65 E-value=46 Score=32.62 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.5
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~ 405 (461)
||.|+|+|+.|..+|..+...
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~ 22 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA 22 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC
Confidence 799999999999999988653
No 353
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=35.02 E-value=25 Score=34.18 Aligned_cols=35 Identities=17% Similarity=0.424 Sum_probs=24.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccc
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~ 431 (461)
++|+|+|+||.-+|..|.+. | ..+|.++..-+...
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCc
Confidence 78999999999999888532 2 24688887765543
No 354
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=35.01 E-value=3e+02 Score=28.11 Aligned_cols=155 Identities=12% Similarity=0.139 Sum_probs=73.8
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecC----ceeeccCCCCCCccccchhhhhhHhhhcCCCCCCeeeE
Q 012532 205 IYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDG----ERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPV 280 (461)
Q Consensus 205 i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDG----erILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPV 280 (461)
+-+++.|+-++..|...+...++..-..++.||.+-.. .+..-+|--..+.+|-..+++... ..++ ....+=+
T Consensus 77 i~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~-~l~~--g~gki~i 153 (336)
T PRK15408 77 VNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAK-QVGK--DKAKVAF 153 (336)
T ss_pred HHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHH-hcCC--CCCEEEE
Confidence 44678888888777776666776655556666665321 122212100011233333333322 2221 1112212
Q ss_pred EeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeee---EEeeCCCccHH----HHHHHHcCCCc
Q 012532 281 TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI---QFEDFANHNAF----DLLEKYGTTHL 353 (461)
Q Consensus 281 ~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lI---qfEDF~~~nAf----~lL~rYr~~~~ 353 (461)
+ .|.-+. ....+..+.|.+.+++.| |+.-| ++.|+....|+ .+|++|-+--.
T Consensus 154 l--~g~~~~------------------~~~~~r~~g~~~~l~~~~-p~~~vv~~~~~~~d~~~a~~~~~~lL~~~pdi~a 212 (336)
T PRK15408 154 F--YSSPTV------------------TDQNQWVKEAKAKIAKEH-PGWEIVTTQFGYNDATKSLQTAEGILKAYPDLDA 212 (336)
T ss_pred E--ECCCCC------------------ccHHHHHHHHHHHHHhhC-CCCEEEeecCCCCcHHHHHHHHHHHHHHCCCCcE
Confidence 2 332100 001233466666676677 65433 23445555554 46666654223
Q ss_pred eeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcc
Q 012532 354 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAG 392 (461)
Q Consensus 354 ~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAG 392 (461)
+|--| ..++.|.+.|++-.|+. +|.++|-+
T Consensus 213 I~~~~-----~~~~~Ga~~Al~~~g~~----~v~VvG~D 242 (336)
T PRK15408 213 IIAPD-----ANALPAAAQAAENLKRD----KVAIVGFS 242 (336)
T ss_pred EEECC-----CccHHHHHHHHHhCCCC----CEEEEEeC
Confidence 33222 23445667888887753 56666755
No 355
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=34.98 E-value=53 Score=35.26 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=24.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.||+|+||||+ -...++-..+.+...++ -..|||+|-+
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did 38 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDID 38 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCC
Confidence 48999999996 44444443333222332 4689999975
No 356
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.83 E-value=62 Score=27.03 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=22.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
|||+|.|..|..+++.|... + .++.++|.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECC
Confidence 78999999999999988542 2 368888875
No 357
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=34.73 E-value=2e+02 Score=31.22 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
|.-++..|.|..-.||+.-+.... + ..=+|+.|+..|-
T Consensus 264 d~V~vp~G~GGli~Gia~~lK~~~----~-----~~vkvi~VEp~~s 301 (431)
T TIGR02035 264 LFVYLPCGVGGGPGGVAFGLKLAF----G-----DNVHCFFAEPTHS 301 (431)
T ss_pred CEEEEEeCcCHHHHHHHHHHHHhc----C-----CCCEEEEEeeCCC
Confidence 567899999987788888775431 1 1237999998774
No 358
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=34.57 E-value=1.3e+02 Score=34.39 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++|.|+|||..|.|||-+++.. .|+ .++++|.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~----~G~-------~V~l~d~~ 337 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATK----AGI-------PVRIKDIN 337 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHH----cCC-------eEEEEeCC
Confidence 5899999999999999887532 265 47777754
No 359
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=34.34 E-value=52 Score=32.53 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=24.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
||.|+|+|..|..+|..+... |. .++++|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g~-------~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----GH-------DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 799999999999999998653 42 46677764
No 360
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=34.34 E-value=45 Score=39.38 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=26.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
...|||+|||.||+.-|..+.. .|+ ++.++|..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar-----~G~-------~V~liD~~ 195 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR-----AGA-------RVILVDEQ 195 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 4589999999999999987643 364 58899875
No 361
>PRK06116 glutathione reductase; Validated
Probab=34.28 E-value=47 Score=34.83 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-++|+|||+||+-.|..+... | .++.++|+.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~-----G-------~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMY-----G-------AKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecc
Confidence 589999999999988877543 5 368899975
No 362
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=34.13 E-value=47 Score=34.97 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=24.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-++|+|+|+||+..|..+.+. |. ++.++|++
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~-----G~-------~V~lie~~ 34 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANH-----GA-------KVAIAEEP 34 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEecC
Confidence 489999999999888777543 63 68888874
No 363
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.06 E-value=46 Score=35.22 Aligned_cols=32 Identities=31% Similarity=0.245 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-.++|+|+|+||+..|..+... | .++.++|+.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~-----G-------~~V~lie~~ 36 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQL-----G-------LKTAVVEKK 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 4799999999999999776442 5 368899875
No 364
>PRK06932 glycerate dehydrogenase; Provisional
Probab=34.02 E-value=1e+02 Score=31.53 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHH
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIA 403 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~ 403 (461)
..|.++++.|+|-|..|-.+|+++.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~ 167 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQ 167 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh
Confidence 3688999999999999999999884
No 365
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=33.86 E-value=40 Score=35.37 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=24.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.|+|+|||.+|+..|-.|...- ...|+ ++.++|+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~-~~~G~-------~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNP-LTKDL-------KVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCc-ccCCC-------eEEEEeC
Confidence 4899999999999997765310 00365 4777876
No 366
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=33.71 E-value=62 Score=33.18 Aligned_cols=34 Identities=15% Similarity=0.419 Sum_probs=27.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
..||.|+|||..|..+|-+++. .|+. ..|.|+|.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~ 39 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDI 39 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeC
Confidence 3599999999999999998763 2652 56999997
No 367
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=33.67 E-value=1.3e+02 Score=29.75 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=15.5
Q ss_pred CCCceEEEeCcchHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAEL 401 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~l 401 (461)
...++++|+|+|+.|...+.+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ 163 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARL 163 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHH
Confidence 356789999999877766543
No 368
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=33.46 E-value=23 Score=36.98 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=27.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
+|+++|.|-||+.+|++++...- | ..|.++-..-.|
T Consensus 1 kfivvgggiagvscaeqla~~~p-----s-----a~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEP-----S-----AEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCC-----C-----CcEEEEeccHHH
Confidence 58999999999999999987621 1 257777665554
No 369
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=33.43 E-value=69 Score=29.88 Aligned_cols=24 Identities=42% Similarity=0.427 Sum_probs=17.2
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHH
Q 012532 380 SLADQRFLFLGA-GEAGTGIAELIA 403 (461)
Q Consensus 380 ~L~d~rivf~GA-GsAgiGIA~li~ 403 (461)
+|++.++||.|| |..|..+|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~ 26 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLA 26 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH
Confidence 477889999998 445666666654
No 370
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=33.24 E-value=75 Score=30.38 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=35.0
Q ss_pred eeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEE
Q 012532 277 CLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQF 333 (461)
Q Consensus 277 ~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqf 333 (461)
.||++||+-.+.. ..++.++..+.+.+|++.|++.+|-..+|..
T Consensus 91 ~lp~vlD~E~~~~-------------~~~~~~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 91 NLPIAIYVSYYGD-------------YNPDTKKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred CCCeEEEEecCCC-------------CCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 6999999853221 1256788888999999999999999999975
No 371
>PLN02740 Alcohol dehydrogenase-like
Probab=33.16 E-value=87 Score=32.02 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
-.+++++|+|+|+.|...+.+... .|. ++++.+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~-----~G~------~~Vi~~~~ 231 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARA-----RGA------SKIIGVDI 231 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCC------CcEEEEcC
Confidence 357899999998877776554432 253 35776665
No 372
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=33.09 E-value=36 Score=37.46 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHH
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
..++++||||+|+|..|+=||..|..
T Consensus 179 ~~f~gKrVlVVG~g~Sg~DIa~el~~ 204 (531)
T PF00743_consen 179 EPFKGKRVLVVGGGNSGADIAVELSR 204 (531)
T ss_dssp GGGTTSEEEEESSSHHHHHHHHHHTT
T ss_pred hhcCCCEEEEEeCCHhHHHHHHHHHH
Confidence 45678999999999999999988744
No 373
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=33.03 E-value=1.2e+02 Score=30.32 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=17.1
Q ss_pred CCCceEEEeCcchHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li 402 (461)
..+++++|+|+|+.|...+.++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~a 192 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLL 192 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHH
Confidence 4678999999998887776443
No 374
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=47 Score=37.11 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=30.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
..+++-|||++|||-.|+-.-+.|+.. |+ +.|.++|.+-+
T Consensus 8 eai~~~riLvVGaGGIGCELLKnLal~-----gf------~~IhiIDlDTI 47 (603)
T KOG2013|consen 8 EAIKSGRILVVGAGGIGCELLKNLALT-----GF------EEIHIIDLDTI 47 (603)
T ss_pred HHhccCeEEEEecCcccHHHHHHHHHh-----cC------CeeEEEeccce
Confidence 345788999999998888776666543 66 57999998755
No 375
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=32.88 E-value=52 Score=34.38 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
||+|+|||-||+..|..+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~ 20 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD 20 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 58999999999999988855
No 376
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.87 E-value=55 Score=32.89 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+|.|+|||+.|..+|..+... | .++.+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecCH
Confidence 689999999999999998654 4 3466666643
No 377
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=32.74 E-value=56 Score=31.83 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
+|+|+|+|..|..+|+.|... |- .+.++|.+--.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-----g~-------~Vv~Id~d~~~ 35 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-----GH-------NVVLIDRDEER 35 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-----CC-------ceEEEEcCHHH
Confidence 799999999999999999653 42 46666665443
No 378
>PRK07121 hypothetical protein; Validated
Probab=32.45 E-value=57 Score=34.84 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=26.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
+-.|||+|+|.||+..|-.+.+ .|. ++.++++...
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae-----~G~-------~VillEK~~~ 54 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAA-----AGA-------RVLVLERAAG 54 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeCCCC
Confidence 5679999999999998866643 253 5778887654
No 379
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.43 E-value=51 Score=35.18 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
-.++|+|||+||.-.|..+... |. ++.++|++
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~-----G~-------~V~lie~~ 36 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADL-----GL-------ETVCVERY 36 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 4689999999999998777542 63 68889875
No 380
>PTZ00058 glutathione reductase; Provisional
Probab=32.37 E-value=52 Score=36.54 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+--++|+|||+||...|..+.+. |. ++-+++++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~-----G~-------~ValIEk~ 80 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN-----KA-------KVALVEKD 80 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 445699999999999998887543 53 57888864
No 381
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=32.37 E-value=56 Score=34.64 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.6
Q ss_pred CCceEEEeCcchHHHH-HHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTG-IAELIAL 404 (461)
Q Consensus 382 ~d~rivf~GAGsAgiG-IA~li~~ 404 (461)
+.++|+|+|.|-+|++ +|++|..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~ 29 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLN 29 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHh
Confidence 4568999999999999 7988864
No 382
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=32.12 E-value=1.4e+02 Score=29.81 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 371 laAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
+.|++..+ --.+++++|.|+|+.|...+.+.
T Consensus 150 ~~~~~~~~-~~~g~~vlV~G~g~vG~~~~~~a 180 (347)
T PRK10309 150 LHAFHLAQ-GCEGKNVIIIGAGTIGLLAIQCA 180 (347)
T ss_pred HHHHHhcC-CCCCCEEEEECCCHHHHHHHHHH
Confidence 44444432 23578999999988777765443
No 383
>PRK06370 mercuric reductase; Validated
Probab=32.05 E-value=64 Score=34.04 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=26.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+-.+||+|+|+||+..|..+... |. ++.++|+.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~-----G~-------~v~lie~~ 37 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGL-----GM-------KVALIERG 37 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 45799999999999999887653 54 68888865
No 384
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=31.75 E-value=82 Score=30.11 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 367 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 367 LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
++-|++-++-.-+.-...+++++|||..|..+++.+
T Consensus 68 v~~l~~~~~~~l~~~~~~rV~IIGaG~iG~~l~~~~ 103 (213)
T PRK05472 68 VEELLEFIEKILGLDRTWNVALVGAGNLGRALLNYN 103 (213)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhh
Confidence 344444444433333668999999999999998864
No 385
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=31.60 E-value=1.3e+02 Score=30.15 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHH
Q 012532 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403 (461)
Q Consensus 370 llaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~ 403 (461)
.+.|++..+ .-.+++++++|||+.|...+.+..
T Consensus 155 a~~a~~~~~-~~~g~~VlV~G~G~vG~~a~~~a~ 187 (349)
T TIGR03201 155 PYQAAVQAG-LKKGDLVIVIGAGGVGGYMVQTAK 187 (349)
T ss_pred HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHH
Confidence 344444322 234789999999888887655553
No 386
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=31.58 E-value=61 Score=34.12 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=26.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+..|||+|+|.||+..|-.+.+ .|+ ++.++++..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~-----~G~-------~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE-----AGA-------SVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCCC
Confidence 45679999999999988876643 364 477777653
No 387
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=31.57 E-value=44 Score=32.21 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=23.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
||+|+||||+-.. .++...+.+...++ ...|+|+|.+
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did 37 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDID 37 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SC
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCC
Confidence 7899999998654 34444444434443 4579999974
No 388
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=31.52 E-value=41 Score=34.90 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~ 405 (461)
.+|+|+|||-||+..|..|.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~ 24 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE 24 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 5799999999999999888664
No 389
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.52 E-value=61 Score=34.81 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
++..+|+|+|.|-+|+++|+++..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~ 28 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCAR 28 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHH
Confidence 456789999999999998888764
No 390
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=31.44 E-value=59 Score=33.85 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=24.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCC-CChhhhcCcEEEEcCCCcc
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~G-ls~eeAr~~i~lvDs~GLi 430 (461)
|||+|+|.||+..|-.+.+ .| . ++.++++....
T Consensus 2 VvVVG~G~AGl~AA~~aa~-----~G~~-------~V~vlEk~~~~ 35 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKK-----AGAA-------NVVLLEKMPVI 35 (439)
T ss_pred EEEECCCHHHHHHHHHHHH-----cCCc-------cEEEEecCCCC
Confidence 7999999999998866543 35 3 58888876653
No 391
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.38 E-value=62 Score=34.19 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+++.||.|+|.|-.|+++|+++..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~ 30 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVA 30 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHH
Confidence 567899999999999998888753
No 392
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=31.06 E-value=57 Score=35.57 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.+|+|+|||-||+-.|-.++. .|+ ++.++|.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-----~Gl-------~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-----RGV-------PVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEEccCc
Confidence 579999999999999987754 375 4777775443
No 393
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=31.04 E-value=5.7e+02 Score=27.29 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=58.5
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCCeeeEEee---CCCccHH----HHHHHHcCCCceeccCcchHHHHHHH--HHHHH
Q 012532 303 KRAIGQEYAELLHEFMTAVKQNYGERILIQFED---FANHNAF----DLLEKYGTTHLVFNDDIQGTASVVLA--GLISA 373 (461)
Q Consensus 303 ~R~~geeY~~fvdEfv~av~~~fGp~~lIqfED---F~~~nAf----~lL~rYr~~~~~FNDDIQGTaaV~LA--gllaA 373 (461)
+|++=+|-.+++.+=++.+++.|||+.+.-+-- ..+...+ +++..+.... ++++...+.++...+ ..++.
T Consensus 71 ~~isWdeAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~-~~~~~~~c~~~~~~~~~~~~G~ 149 (477)
T cd02759 71 ERISWDEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPN-LFLSGESCYWPRDMAHALTTGF 149 (477)
T ss_pred EEecHHHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCc-ccCCcccchHHHHHHHHHhhcc
Confidence 566666666666666777888999988765531 2222221 4555555332 222222222211111 11100
Q ss_pred HHHhCCCCC----CceEEEeCcchHHHH---HHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 374 MKFLGGSLA----DQRFLFLGAGEAGTG---IAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 374 lrv~g~~L~----d~rivf~GAGsAgiG---IA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
-.+.++. -.-||++|+-.+... .+..+.++ ++.| .+++.+|..---
T Consensus 150 --~~~~~~~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~a--r~~g-------~klividpr~s~ 202 (477)
T cd02759 150 --GLGYDEPDWENPECIVLWGKNPLNSNLDLQGHWLVAA--MKRG-------AKLIVVDPRLTW 202 (477)
T ss_pred --CCCCCchhhhcCCEEEEEccChhhhCcHHHHHHHHHH--HHCC-------CEEEEECCCCCh
Confidence 0122232 267899999877653 34444433 1224 378999985533
No 394
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=30.93 E-value=1.6e+02 Score=29.37 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 360 QGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
+..+...++..+.|++. .+-..++++++.|+|+.|..++.+.
T Consensus 153 ~aa~~~~~~ta~~a~~~-~~~~~g~~vlI~g~g~vG~~~~~~a 194 (350)
T cd08256 153 DAILIEPLACALHAVDR-ANIKFDDVVVLAGAGPLGLGMIGAA 194 (350)
T ss_pred HHhhhhHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHH
Confidence 33333344444555543 3334567888888877776654444
No 395
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=30.87 E-value=59 Score=35.31 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=24.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.||-|+|+|..|.+||..++.+ |. ++.++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 3799999999999999998754 64 4666665
No 396
>PRK07060 short chain dehydrogenase; Provisional
Probab=30.87 E-value=85 Score=29.05 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=19.2
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGA-GEAGTGIAELIAL 404 (461)
Q Consensus 380 ~L~d~rivf~GA-GsAgiGIA~li~~ 404 (461)
+++..+++|.|| |..|..+|+.+..
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~ 31 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQ 31 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHH
Confidence 577889999998 6777777776643
No 397
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=30.63 E-value=62 Score=34.45 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
++++|+|+|+||+-.|..+.+. | .++.+++++.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~-----g-------~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQL-----G-------ADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEccC
Confidence 3799999999999998877543 4 3588888654
No 398
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=30.61 E-value=84 Score=30.91 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=27.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++-||.|+|+|..|-.|+..+... |.- ..+++|.+|++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCC
Confidence 456899999999999999998653 321 12458888763
No 399
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=30.19 E-value=1.4e+02 Score=28.21 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 363 aaV~LAgllaAlrv~g~~L~d~rivf~GAGs-AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
--+|-.|++.-++-.+.+++..+++++|.+. .|.-+|.||... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~ 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC
Confidence 4567888899999999999999999999984 888888888542 43 36667765
No 400
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=30.17 E-value=84 Score=26.89 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCCC-ceEEEeCcchHHHHHHHHHHHHH
Q 012532 369 GLISAMKFLGGSLAD-QRFLFLGAGEAGTGIAELIALEI 406 (461)
Q Consensus 369 gllaAlrv~g~~L~d-~rivf~GAGsAgiGIA~li~~~m 406 (461)
--++.+|..+.- +. .++||+|| |.|.|.|--|..++
T Consensus 25 ~qI~yvk~~~~~-~GpK~VLViGa-StGyGLAsRIa~aF 61 (78)
T PF12242_consen 25 NQIEYVKSQGKI-NGPKKVLVIGA-STGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHC----TS-SEEEEES--SSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CCCceEEEEec-CCcccHHHHHHHHh
Confidence 345566664444 55 78999997 78999999999886
No 401
>PRK15076 alpha-galactosidase; Provisional
Probab=30.17 E-value=75 Score=34.19 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=23.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.||.|+|||+.|... .++..+....++ +-..++|+|.+
T Consensus 2 ~KIaIIGaGsvg~~~--~~~~~i~~~~~l----~~~evvLvDid 39 (431)
T PRK15076 2 PKITFIGAGSTVFTK--NLLGDILSVPAL----RDAEIALMDID 39 (431)
T ss_pred cEEEEECCCHHHhHH--HHHHHHhhCccC----CCCEEEEECCC
Confidence 589999999975433 333333221233 23479999964
No 402
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=30.13 E-value=3.4e+02 Score=25.60 Aligned_cols=82 Identities=10% Similarity=0.014 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHcCC-----CceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEe
Q 012532 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTT-----HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFL 389 (461)
Q Consensus 315 dEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~-----~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~ 389 (461)
++|+.++.+...+++++..+ .+.. +..++.-++.. ...++ .||=...+++.++|--.. | ....|+|.
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d-~G~~-~~~~~~~~~~~~~~~~~~~~~---~g~mG~~lpaAiGaala~--p-~~~Vv~i~ 73 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVST-TGMT-SRELFELRDRPGGGHAQDFLT---VGSMGHASQIALGIALAR--P-DRKVVCID 73 (188)
T ss_pred HHHHHHHHhhcCCCCEEEEC-CCcc-hHHHHHhhcCCCCCccCceee---cCccccHHHHHHHHHHhC--C-CCcEEEEe
Confidence 47888899999667777554 5543 45565544121 22233 277777777777764222 1 33678999
Q ss_pred CcchHHHHHHHHHHH
Q 012532 390 GAGEAGTGIAELIAL 404 (461)
Q Consensus 390 GAGsAgiGIA~li~~ 404 (461)
|-|+....+.++...
T Consensus 74 GDG~f~m~~~eL~ta 88 (188)
T cd03371 74 GDGAALMHMGGLATI 88 (188)
T ss_pred CCcHHHhhccHHHHH
Confidence 999998888776543
No 403
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=30.07 E-value=67 Score=33.65 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999999854
No 404
>PRK07877 hypothetical protein; Provisional
Probab=29.90 E-value=45 Score=38.43 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.+|++.+|+|+|+| .|.-+|..|+.+ |+ -.+|.++|-+=+
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v 142 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL 142 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE
Confidence 56889999999998 888899888765 63 257999997654
No 405
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=29.84 E-value=45 Score=35.73 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=30.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccc
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~ 431 (461)
..++..|||++|+|+.|+=||..|... | +++||.=+.+--.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~-----g-------a~vt~~qRs~~~~ 211 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEV-----G-------ASVTLSQRSPPHI 211 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhc-----C-------CeeEEEecCCCce
Confidence 468899999999999999888877654 2 3566665544433
No 406
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=29.82 E-value=1.5e+02 Score=30.17 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=14.4
Q ss_pred CCCceEEEeCcchHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAE 400 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~ 400 (461)
-.+++++|.|+|+.|...+.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~ 209 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALL 209 (371)
T ss_pred CCCCEEEEECCCHHHHHHHH
Confidence 35689999999876665443
No 407
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.80 E-value=3.8e+02 Score=28.50 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=56.1
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHh-----
Q 012532 303 KRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFL----- 377 (461)
Q Consensus 303 ~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~----- 377 (461)
.|++=+|-.+++.+-++.+++.|||+.+.-+---.. ...++.++-+.+-+-|-|-.++-+ -++...|++.+
T Consensus 72 ~~iSWdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~--~~~~~~~~~~~lGt~n~~~~~~~c--~~~~~~~~~~~~g~~~ 147 (454)
T cd02755 72 REASWDEALQYIASKLKEIKEQHGPESVLFGGHGGC--YSPFFKHFAAAFGSPNIFSHESTC--LASKNLAWKLVIDSFG 147 (454)
T ss_pred EEeCHHHHHHHHHHHHHHHHHhcCCcEEEEEecCCc--ccHHHHHHHHHhCCCCCCCccccc--hhHHHHHHHHHhhccC
Confidence 466656666666677778888999998876543322 112333333222222212111110 11111122111
Q ss_pred CCC---CCC-ceEEEeCcchHHHH---HHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 378 GGS---LAD-QRFLFLGAGEAGTG---IAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 378 g~~---L~d-~rivf~GAGsAgiG---IA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
..+ +.+ ..||++|+-.+-.. .+..+.++. +.| .+|+.||..-
T Consensus 148 ~~~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~--~~g-------~kiivIdPr~ 196 (454)
T cd02755 148 GEVNPDFENARYIILFGRNLAEAIIVVDARRLMKAL--ENG-------AKVVVVDPRF 196 (454)
T ss_pred CCCCcchhcCCEEEEECcCcccccccHHHHHHHHHH--HCC-------CeEEEECCCC
Confidence 112 222 57899999755442 345555442 234 3799999864
No 408
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.78 E-value=63 Score=32.35 Aligned_cols=41 Identities=32% Similarity=0.506 Sum_probs=34.1
Q ss_pred ccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhHHHHh
Q 012532 136 TVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLL 179 (461)
Q Consensus 136 ~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll 179 (461)
+|.=.|-|++|....++.++..+.+ ||+.-..|+++||+++
T Consensus 39 tVSLve~ql~r~R~~~~~Le~~l~~---L~~~A~~N~~lf~r~~ 79 (218)
T COG3159 39 TVSLVERQLARLRNRIRELEEELAA---LMENARANERLFYRLH 79 (218)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHH
Confidence 3444678999999999988877766 8899999999999984
No 409
>PRK06057 short chain dehydrogenase; Provisional
Probab=29.64 E-value=1e+02 Score=29.14 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.+++++++|.||.. ||...++..+.+ .|. +++++|+
T Consensus 4 ~~~~~~vlItGasg---gIG~~~a~~l~~-~G~-------~v~~~~r 39 (255)
T PRK06057 4 RLAGRVAVITGGGS---GIGLATARRLAA-EGA-------TVVVGDI 39 (255)
T ss_pred cCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------EEEEEeC
Confidence 47789999999932 455555555554 353 4666664
No 410
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=29.59 E-value=2.4e+02 Score=26.52 Aligned_cols=79 Identities=10% Similarity=0.078 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHc-CCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcch
Q 012532 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYG-TTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE 393 (461)
Q Consensus 315 dEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr-~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGs 393 (461)
+++++++.+.+ |+++| +-|.+.+. ..++. ++ ..--.++ +|+-..++.+.++|--.. ....|+|.|=|+
T Consensus 2 ~~~~~~l~~~l-~d~ii-v~d~G~~~-~~~~~-~~~~~~~~~~---~gsmG~~lpaAiGa~la~----~~~Vv~i~GDG~ 70 (181)
T TIGR03846 2 IDAIRAIASYL-EDELV-VSNIGVPS-KELYA-IRDRPLNFYM---LGSMGLASSIGLGLALAT----DRTVIVIDGDGS 70 (181)
T ss_pred HHHHHHHHHhC-CCCEE-EecCCHhH-HHHHh-hhcCCCCeee---ccccccHHHHHHHHHHcC----CCcEEEEEcchH
Confidence 57888888888 65555 56777543 33333 32 1111222 788888888888765443 456888999999
Q ss_pred HHHHHHHHHHH
Q 012532 394 AGTGIAELIAL 404 (461)
Q Consensus 394 AgiGIA~li~~ 404 (461)
...++.++...
T Consensus 71 f~m~~~el~ta 81 (181)
T TIGR03846 71 LLMNLGVLPTI 81 (181)
T ss_pred HHhhhhHHHHH
Confidence 99998776654
No 411
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=29.38 E-value=69 Score=34.48 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=23.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHH-hCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISK-QTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~-~~Gls~eeAr~~i~lvDs~ 427 (461)
.||+|+||||+ -.-.|+..+.+ ...++ -..|||+|-+
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did 38 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID 38 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC
Confidence 38999999995 34344444433 22343 4689999954
No 412
>PLN02827 Alcohol dehydrogenase-like
Probab=29.36 E-value=1.5e+02 Score=30.53 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=17.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li 402 (461)
--.+++++|+|+|..|...+.+.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqla 213 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGA 213 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH
Confidence 34589999999988777765544
No 413
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=29.20 E-value=73 Score=34.93 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=28.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
...|||+|||..|+.+|..|.+. .+. .+|.++|+..
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~----~~~------~~V~VlEk~~ 80 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKF----TNL------KKIALIERRS 80 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhh----CCC------CEEEEEecCc
Confidence 35899999999999999998654 232 3688888864
No 414
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=29.17 E-value=93 Score=29.29 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=17.6
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHH
Q 012532 380 SLADQRFLFLGA-GEAGTGIAELIA 403 (461)
Q Consensus 380 ~L~d~rivf~GA-GsAgiGIA~li~ 403 (461)
++++++++|.|| |..|..+|+.++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~ 31 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLA 31 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHH
Confidence 577899999997 556666666654
No 415
>PRK05866 short chain dehydrogenase; Provisional
Probab=29.10 E-value=1e+02 Score=30.40 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=23.6
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
+..+++.++||.||++ ||...++..+.+ .|. ++++++++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G~-------~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RGA-------TVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CCC-------EEEEEECC
Confidence 4557788999999832 344444444444 353 57777764
No 416
>PLN02576 protoporphyrinogen oxidase
Probab=29.08 E-value=50 Score=34.84 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~ 405 (461)
.+|+|+|||-||+..|..|..+
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~ 34 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASK 34 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHh
Confidence 4799999999999999888654
No 417
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=28.98 E-value=1.5e+02 Score=29.33 Aligned_cols=45 Identities=31% Similarity=0.324 Sum_probs=27.3
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 371 laAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
+.|++.....-.+.++++.|+|+.|...+.+... .|. ++++++++
T Consensus 164 ~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~-----~G~------~~v~~~~~ 208 (350)
T cd08240 164 YSAVKKLMPLVADEPVVIIGAGGLGLMALALLKA-----LGP------ANIIVVDI 208 (350)
T ss_pred HHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHH-----cCC------CeEEEEeC
Confidence 3455544432367899999988877776555432 364 35666654
No 418
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=28.87 E-value=2.2e+02 Score=28.46 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=16.7
Q ss_pred cchHHHHHhcCCCCCceEEEEecCce
Q 012532 219 KGKVLEVLRNWPEKNIQVIVVTDGER 244 (461)
Q Consensus 219 ~g~i~~il~Nwp~~~v~viVVTDGer 244 (461)
..++.+.+..+-.++.++|||+-|..
T Consensus 33 i~~~~~~I~~~~~~g~~vvlV~Sga~ 58 (266)
T PRK12314 33 IEQLVFVISDLMNKGKEVILVSSGAI 58 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeeCcc
Confidence 34444555555556678999988754
No 419
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=28.87 E-value=1e+02 Score=28.40 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=34.0
Q ss_pred CeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeE
Q 012532 276 ACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQ 332 (461)
Q Consensus 276 ~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIq 332 (461)
..||++||+=.+ .....+.++..+.+..|++.+++..|-+.+|-
T Consensus 83 ~~~~~~lD~E~~-------------~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~iY 126 (181)
T PF01183_consen 83 GDLPPALDVEDD-------------KSNNPSKSDNTAWVKAFLDEVEKAAGYKPGIY 126 (181)
T ss_dssp SCS-EEEEE-S--------------GGCCSSHHHHHHHHHHHHHHHHHHCTSEEEEE
T ss_pred CcceEEEecccc-------------ccCCCCHHHHHHHHHHHHHHHHHHhCCceeEe
Confidence 478999998532 45567889999999999999999898777774
No 420
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=28.75 E-value=5.1e+02 Score=24.55 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHH-c--CCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 012532 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKY-G--TTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391 (461)
Q Consensus 315 dEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rY-r--~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GA 391 (461)
++++.++.+...++.+| +-|.+++ . ....+| + .....++.--.|+=..++++.++|--.. | ....|+|.|=
T Consensus 2 ~~~~~~l~~~l~~~~iv-v~d~G~~-~-~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~--p-~~~vv~i~GD 75 (205)
T cd02003 2 TEVLGALNEAIGDDDVV-INAAGSL-P-GDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAK--P-DREVYVLVGD 75 (205)
T ss_pred hhHHHHHHHhCCCCCEE-EECCCcc-h-HHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhC--C-CCeEEEEEcc
Confidence 35777788888666655 4565543 2 233333 2 2233444445677777777777765332 1 3357889999
Q ss_pred chHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 392 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 392 GsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
|+...++.++.... + .+++ =.++++|-.|+
T Consensus 76 Gsf~m~~~eL~Ta~--~-~~lp-----v~ivV~NN~~~ 105 (205)
T cd02003 76 GSYLMLHSEIVTAV--Q-EGLK-----IIIVLFDNHGF 105 (205)
T ss_pred chhhccHHHHHHHH--H-cCCC-----CEEEEEECCcc
Confidence 99999887766532 3 4664 25777777765
No 421
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=28.63 E-value=1.4e+02 Score=29.23 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=18.7
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 012532 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAE 400 (461)
Q Consensus 371 laAlrv~g~~L~d~rivf~GAGsAgiGIA~ 400 (461)
+.++...+.. +++++++.|+|+.|..++.
T Consensus 155 ~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~ 183 (339)
T cd08232 155 LHAVNRAGDL-AGKRVLVTGAGPIGALVVA 183 (339)
T ss_pred HHHHHhcCCC-CCCEEEEECCCHHHHHHHH
Confidence 3445555555 8999999887655555443
No 422
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=28.59 E-value=90 Score=29.88 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMP 413 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls 413 (461)
.|+++|-|-||.-|++.+.+.|.++.|++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~ 29 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGIN 29 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBT
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccc
Confidence 47899999999999999999888888774
No 423
>PRK07890 short chain dehydrogenase; Provisional
Probab=28.58 E-value=87 Score=29.33 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
+++.+++|.||++ ||...++..+.+ .|. +++++|+
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeC
Confidence 5678999999843 445555555544 364 5777775
No 424
>PRK14727 putative mercuric reductase; Provisional
Probab=28.43 E-value=78 Score=33.79 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=25.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.-.++|+|||+||+..|..+.+. |. ++.++|+.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~-----g~-------~v~~ie~~ 48 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEH-----GA-------RVTIIEGA 48 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEcc
Confidence 34699999999999999988653 53 57777765
No 425
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.40 E-value=84 Score=29.99 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=17.7
Q ss_pred CCCCceEEEeCcc---hHHHHHHHHHH
Q 012532 380 SLADQRFLFLGAG---EAGTGIAELIA 403 (461)
Q Consensus 380 ~L~d~rivf~GAG---sAgiGIA~li~ 403 (461)
.++++++||.||+ ..|.++|+.++
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la 30 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIK 30 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHH
Confidence 3788999999996 45666666664
No 426
>PLN02661 Putative thiazole synthesis
Probab=28.39 E-value=76 Score=33.76 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=16.2
Q ss_pred CceEEEeCcchHHHHHHHHHH
Q 012532 383 DQRFLFLGAGEAGTGIAELIA 403 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~ 403 (461)
|-.|+|+|||.||+..|-.+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La 112 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELS 112 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHH
Confidence 567788888888888777765
No 427
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.22 E-value=80 Score=32.41 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.||.|+|||..|..+|-.++. .|+ ...|.|+|.+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~ 37 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVV 37 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCC
Confidence 499999999999999987753 255 3579999973
No 428
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=28.21 E-value=1.5e+02 Score=28.04 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=37.0
Q ss_pred cCCCCC-CeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEE
Q 012532 270 GGIRPS-ACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQF 333 (461)
Q Consensus 270 gGI~P~-~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqf 333 (461)
++..|. ..||++||+=.++. -+.. ...+.++..+++.+|++.|+++.|-+.+|--
T Consensus 80 ~~~~~~~~~lp~~lD~E~~~~--------~~~~-~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 135 (199)
T cd06412 80 GGWSPDGRTLPGVLDLEYNPY--------GATC-YGLSPAQMVSWIKDFSDTYKARTGRDPVIYT 135 (199)
T ss_pred ccccCCCCCCCeEEEEecCCC--------CCcc-CCCCHHHHHHHHHHHHHHHHHHHCCCcEEEe
Confidence 444443 47999999864321 1111 2345677889999999999998887777753
No 429
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=28.17 E-value=65 Score=36.63 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~ 404 (461)
--|+|+|||.||+..|-.++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR 25 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAAR 25 (618)
T ss_pred ceEEEECchHHHHHHHHHHHH
Confidence 458999999999999977654
No 430
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=28.14 E-value=1.9e+02 Score=25.45 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=43.3
Q ss_pred CCCCccccchhhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCee
Q 012532 251 LGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL 330 (461)
Q Consensus 251 lG~~GmgI~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~l 330 (461)
.|++|-...-+-..+-..+...+|+. |+|-+|||+-. ...+-++|.+-+.++++.+++. |++++
T Consensus 42 ~g~~G~~~~~~~~~l~~~~~~~~pd~---v~i~~G~ND~~------------~~~~~~~~~~~l~~li~~~~~~-~~~vi 105 (177)
T cd01822 42 AGVSGDTTAGGLARLPALLAQHKPDL---VILELGGNDGL------------RGIPPDQTRANLRQMIETAQAR-GAPVL 105 (177)
T ss_pred cCcCCcccHHHHHHHHHHHHhcCCCE---EEEeccCcccc------------cCCCHHHHHHHHHHHHHHHHHC-CCeEE
Confidence 56666544443334445555567763 57889997521 1245678888899999999887 67766
Q ss_pred eE
Q 012532 331 IQ 332 (461)
Q Consensus 331 Iq 332 (461)
+.
T Consensus 106 l~ 107 (177)
T cd01822 106 LV 107 (177)
T ss_pred EE
Confidence 54
No 431
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=28.01 E-value=1.2e+02 Score=30.56 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=15.9
Q ss_pred CCCceEEEeCcchHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li 402 (461)
-.+++++|.|+|+.|...+.+.
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~a 196 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGA 196 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHH
Confidence 3578999999987776655443
No 432
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.99 E-value=5.8e+02 Score=27.90 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=60.8
Q ss_pred ccccchhhhHHHHHHHHHHHHHhcCCCeeeEE-eeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCC-
Q 012532 302 QKRAIGQEYAELLHEFMTAVKQNYGERILIQF-EDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGG- 379 (461)
Q Consensus 302 ~~R~~geeY~~fvdEfv~av~~~fGp~~lIqf-EDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~- 379 (461)
-+|++=++-.+.|.+=+..+++.|||+.+.-+ ......+.+ +++|+-..+-+-|-+-++ ..+..++..+.....|.
T Consensus 76 ~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~~~~~-~~~r~~~~~Gs~~~~~~~-~~c~~~~~~~~~~~~g~~ 153 (523)
T cd02757 76 FVPISWDEALDTIADKIRALRKENEPHKIMLHRGRYGHNNSI-LYGRFTKMIGSPNNISHS-SVCAESEKFGRYYTEGGW 153 (523)
T ss_pred eeEecHHHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCccch-HHHHHHHHhCcCCCcCCc-chhhhHHHHHHHHHhCCC
Confidence 46777777777777777788889999887544 344444433 444443222221111122 12222222222222322
Q ss_pred --C---CCC-ceEEEeCcchHHHH----HHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 380 --S---LAD-QRFLFLGAGEAGTG----IAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 380 --~---L~d-~rivf~GAGsAgiG----IA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+ +.+ ..||++|+-.+..+ .+..+.++ ++.| .+|+.||..=
T Consensus 154 ~~~~~D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a--~~~g-------akliviDPr~ 203 (523)
T cd02757 154 DYNSYDYANAKYILFFGADPLESNRQNPHAQRIWGG--KMDQ-------AKVVVVDPRL 203 (523)
T ss_pred CCCCcchhcCcEEEEECCChHHhCCCcHHHHHHHHH--HHCC-------CEEEEECCCC
Confidence 2 233 57899998765542 33444444 2223 3799999853
No 433
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.86 E-value=77 Score=32.52 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=26.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
||.|+|||..|.-+|-.|+. .|+ .+.+.|+|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCC
Confidence 68999999999999998764 255 2479999973
No 434
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=27.79 E-value=83 Score=34.07 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=24.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-CCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQ-TNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~-~Gls~eeAr~~i~lvDs~G 428 (461)
.||+|+||||+ -.-.|+..+.+. ..++ -..|+|+|-+.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~ 39 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA 39 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH
Confidence 48999999996 444454544432 2342 46899999654
No 435
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=27.50 E-value=86 Score=33.43 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=22.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
||.|+|||+.|.+.|- +..+.....+ +-..++|+|.+
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did 38 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDID 38 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCC
Confidence 7999999998887663 1111110011 23479999964
No 436
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=27.43 E-value=1.6e+02 Score=29.68 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=16.0
Q ss_pred CCCceEEEeCcchHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li 402 (461)
-.+++++|.|+|+.|...+.+.
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~a 207 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGA 207 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHH
Confidence 4678999999987776655443
No 437
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=27.24 E-value=68 Score=30.56 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~ 404 (461)
++.||.|+|+|..|..+|..+..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~ 25 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLK 25 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh
Confidence 45789999999999999988864
No 438
>PRK10083 putative oxidoreductase; Provisional
Probab=27.23 E-value=1.8e+02 Score=28.55 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=16.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHH
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li 402 (461)
+.-.+++++|+|+|+.|..++.+.
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a 180 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVL 180 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH
Confidence 344578999999887666554443
No 439
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=27.15 E-value=2.1e+02 Score=27.87 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=15.7
Q ss_pred CCCceEEEeCcchHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li 402 (461)
..+++++|.|+|+.|..++++.
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la 179 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLL 179 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHH
Confidence 4578999999876666655544
No 440
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=27.11 E-value=64 Score=34.25 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.5
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 012532 386 FLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~ 405 (461)
|||+|||-+|+..|..|..+
T Consensus 1 vvVIGaG~~GL~aA~~La~~ 20 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA 20 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC
Confidence 58999999999999988654
No 441
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=27.10 E-value=3.6e+02 Score=28.20 Aligned_cols=95 Identities=16% Similarity=0.284 Sum_probs=61.3
Q ss_pred HHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccC-cchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 012532 322 KQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDD-IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE 400 (461)
Q Consensus 322 ~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDD-IQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~ 400 (461)
-.+| .++++ +-.+. +.+.+.+.+| ..+||.|-+ -.-=-+=+||=++.-.+..|++|++.+|+++|-+.- ++|+
T Consensus 98 ls~y-~D~iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~--~v~~ 171 (334)
T PRK01713 98 LGRM-YDAIE-YRGFK-QSIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN--NMGN 171 (334)
T ss_pred HHHh-CCEEE-EEcCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc--CHHH
Confidence 3456 55444 33443 3344445555 468999942 222234467777777677777899999999998753 4788
Q ss_pred HHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 401 LIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 401 li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
-++.++.+ .|+ .|.++-.+++.
T Consensus 172 Sl~~~~~~-~g~-------~v~~~~P~~~~ 193 (334)
T PRK01713 172 SLLLIGAK-LGM-------DVRICAPKALL 193 (334)
T ss_pred HHHHHHHH-cCC-------EEEEECCchhc
Confidence 77777666 475 48888877773
No 442
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.00 E-value=1.1e+02 Score=28.38 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=23.1
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 380 ~L~d~rivf~GA-GsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+++.+++|.|| |..|..+|+.++ + .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467789999998 455555555553 3 253 47777664
No 443
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=26.97 E-value=86 Score=31.38 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999888543 43 1257777764
No 444
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=26.93 E-value=64 Score=32.43 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
-+..+|+|+|||+.|..+|-.+..+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC
Confidence 3456899999999999999888654
No 445
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.91 E-value=1.1e+02 Score=31.43 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHH
Q 012532 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIAL 404 (461)
Q Consensus 362 TaaV~LAgllaAlrv~g~~L~d~rivf~GAG-sAgiGIA~li~~ 404 (461)
-.-+|-+|++.=++-.+.+++++++|++|.+ ..|.-+|.|+..
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~ 179 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN 179 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH
Confidence 3567788889999999999999999999998 889999998853
No 446
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=26.65 E-value=48 Score=30.46 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=12.5
Q ss_pred hhcCCCcccccccC
Q 012532 205 IYSRPQGVFISLKD 218 (461)
Q Consensus 205 i~r~p~GlYis~~d 218 (461)
-+|||.|.||..+|
T Consensus 68 ~~rR~DGs~i~Fdd 81 (122)
T COG0093 68 EVRRPDGSYIKFDD 81 (122)
T ss_pred ceEcCCCCEEEeCC
Confidence 48999999998887
No 447
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=26.63 E-value=4.7e+02 Score=23.70 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCeeeEEeeCCC-ccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcch
Q 012532 315 HEFMTAVKQNYGERILIQFEDFAN-HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE 393 (461)
Q Consensus 315 dEfv~av~~~fGp~~lIqfEDF~~-~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGs 393 (461)
..++.++.+...++.+| +-|-++ ..-...+-+++.....+..=- |+=...+++.++|--.. + ....++|.|=|+
T Consensus 4 ~~~~~~l~~~l~~~~~i-v~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~--~-~~~vv~i~GDG~ 78 (178)
T cd02002 4 EYLAAALAAALPEDAII-VDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALAN--P-DRKVVAIIGDGS 78 (178)
T ss_pred HHHHHHHHhhCCCCeEE-EecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcC--C-CCeEEEEEcCch
Confidence 45777888888666555 455543 222222222333333343322 44444555555554322 1 346788999999
Q ss_pred HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 394 AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 394 AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
...++.++.... + .+++ =.+.++|-.|+
T Consensus 79 f~~~~~el~ta~--~-~~~p-----~~~iV~nN~~~ 106 (178)
T cd02002 79 FMYTIQALWTAA--R-YGLP-----VTVVILNNRGY 106 (178)
T ss_pred hhccHHHHHHHH--H-hCCC-----eEEEEEcCccH
Confidence 999986655432 3 2543 24566666543
No 448
>PRK02106 choline dehydrogenase; Validated
Probab=26.39 E-value=52 Score=35.87 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=18.3
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
-++|+|+|+||.-+|..|.+
T Consensus 7 D~iIVG~G~aG~vvA~rLae 26 (560)
T PRK02106 7 DYIIIGAGSAGCVLANRLSE 26 (560)
T ss_pred cEEEECCcHHHHHHHHHHHh
Confidence 58999999999999999865
No 449
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.24 E-value=1e+02 Score=29.44 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=24.6
Q ss_pred CCCCCceEEEeCcch---HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 379 GSLADQRFLFLGAGE---AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 379 ~~L~d~rivf~GAGs---AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
.+++++++||.||++ .|.++|+.+++ +|. +++++|++
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~-----~G~-------~v~l~~r~ 45 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRA-----LGA-------ELAVTYLN 45 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 457788999999864 55566666543 353 47777654
No 450
>PTZ00052 thioredoxin reductase; Provisional
Probab=26.17 E-value=72 Score=34.49 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=24.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
--++|+|||+||+-.|..+... | .++.++|+
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~-----G-------~~V~lie~ 36 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAH-----G-------KKVALFDY 36 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 3689999999999999876543 5 37889995
No 451
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=26.15 E-value=61 Score=34.79 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+|||+|+|+||.-.|-.|...... .-+|.++.+.=
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~---------~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPD---------ALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTC---------SSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCC---------CcEEEEEecCC
Confidence 699999999999999998776421 03688888873
No 452
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=25.97 E-value=2.4e+02 Score=26.69 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=17.0
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHH
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
...-+.++++|.|+|+.|..++.+.
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a 117 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLA 117 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH
Confidence 3344678999999887666654443
No 453
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.88 E-value=61 Score=35.26 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.6
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHH
Q 012532 378 GGSLADQRFLFLGAGEAGTGIAELIALEI 406 (461)
Q Consensus 378 g~~L~d~rivf~GAGsAgiGIA~li~~~m 406 (461)
..+++|++||++|+|..|+=||..|+...
T Consensus 181 ~e~f~~k~VlVIG~g~SG~DIs~d~~~~a 209 (448)
T KOG1399|consen 181 PEKFRDKVVLVVGCGNSGMDISLDLLRVA 209 (448)
T ss_pred cccccCceEEEECCCccHHHHHHHHHHhc
Confidence 34444599999999999999999987653
No 454
>PRK08374 homoserine dehydrogenase; Provisional
Probab=25.87 E-value=1.4e+02 Score=31.04 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=33.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHHhCCCChhhhcCcEEEEcCCCccccCC
Q 012532 384 QRFLFLGAGEAGTGIAELIAL---EISKQTNMPLEETRKKIWLVDSKGLIVSSR 434 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~---~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R 434 (461)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-+...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~ 52 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPE 52 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCC
Confidence 589999999999999999976 3333345321 1244569988887654
No 455
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.83 E-value=93 Score=33.60 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+.+++++|+|.|..|++.++++..
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~ 33 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR 33 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH
Confidence 357899999999999999986643
No 456
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=25.70 E-value=88 Score=31.89 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.||.|+|||..|.++|-.++.. |+ + .+.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeC
Confidence 3799999999999999987542 54 2 4889997
No 457
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=25.59 E-value=4e+02 Score=32.17 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=21.9
Q ss_pred ceEEEeCcchHHHH-----HHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 384 QRFLFLGAGEAGTG-----IAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 384 ~rivf~GAGsAgiG-----IA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.-|||+|+-.+-.+ .++++.++..+ .| -++++||-.-
T Consensus 287 ~~il~~G~Np~~s~~~~~~~~~~l~~ar~~-gg-------~k~VVVDPr~ 328 (1031)
T PRK14991 287 EFALFIGTSPAQSGNPFKRQARQLANARTR-GN-------FEYVVVAPAL 328 (1031)
T ss_pred cEEEEeCcChhHhCCchHHHHHHHHHHHHc-CC-------CEEEEECCCC
Confidence 45699999776543 34445555322 12 2688888743
No 458
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=25.38 E-value=44 Score=36.11 Aligned_cols=20 Identities=25% Similarity=0.647 Sum_probs=17.7
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 012532 386 FLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~ 405 (461)
++|+|+|+||.-+|..|.+.
T Consensus 2 ~iIVG~G~aG~vvA~rLs~~ 21 (532)
T TIGR01810 2 YIIIGGGSAGSVLAGRLSED 21 (532)
T ss_pred EEEECCCchHHHHHHHhccC
Confidence 78999999999999988653
No 459
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=25.33 E-value=79 Score=34.24 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=24.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
+.-|||+|+| ||+..|-.+.+ .|. ++.++++...
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~-----~G~-------~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAR-----EGL-------SVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHH-----CCC-------cEEEEecCCC
Confidence 5579999999 99888766643 364 4778886544
No 460
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=25.30 E-value=89 Score=34.38 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
+..|||+|+|.||+..|-.+.+ .|. ++.++++...+
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~-----~G~-------~v~llEk~~~~ 44 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARK-----LGL-------DVVVLEKEPVF 44 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEecCCCC
Confidence 5679999999999988766543 353 57788877654
No 461
>PRK08265 short chain dehydrogenase; Provisional
Probab=25.27 E-value=1.3e+02 Score=28.65 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=22.4
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
++++++++|.||.. ||...|+..+.+ .|. +++++|+
T Consensus 3 ~~~~k~vlItGas~---gIG~~ia~~l~~-~G~-------~V~~~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGAT---LIGAAVARALVA-AGA-------RVAIVDI 38 (261)
T ss_pred CCCCCEEEEECCCC---hHHHHHHHHHHH-CCC-------EEEEEeC
Confidence 47789999999832 444455555544 363 4666665
No 462
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=25.27 E-value=88 Score=34.91 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~ 431 (461)
.++|+|+|.+|.-.|..+... |+ ++.++++++.+-
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~-----g~-------~v~~~e~~~~~~ 36 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDA-----GL-------KVAMVEIGAADS 36 (544)
T ss_pred cEEEECCchHHHHHHHHHHHC-----CC-------eEEEEeccCccC
Confidence 478999999999999888643 54 689999988775
No 463
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.23 E-value=99 Score=31.97 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=28.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 385 rivf~GA-GsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
||.|.|| |..|..+|..++. .|+-.|.-.-.+.|+|.+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCC
Confidence 7999999 9999999987753 2553222333699999864
No 464
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=25.22 E-value=1.1e+02 Score=31.01 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.+++++||+|+|..|+-+|..+... |. +++.+++++.
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~~~-----g~------~~Vtvi~~~~ 206 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAVLL-----GA------EKVYLAYRRT 206 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeecc
Confidence 4578999999999999888766432 42 2477776654
No 465
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=25.18 E-value=1.6e+02 Score=29.85 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=15.6
Q ss_pred CCCceEEEeCcchHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li 402 (461)
-..++++|.|+|+.|...+.+.
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~a 206 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGA 206 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHH
Confidence 3578999999887666655444
No 466
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.12 E-value=1.1e+02 Score=32.00 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcc
Q 012532 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (461)
Q Consensus 366 ~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi 430 (461)
.+|-+..-+...-++.+.+.+||=|+|+ |+.++|+..+.+. |. +--+|=++++|.-
T Consensus 21 ~~s~~~~~l~~~~k~v~g~~vLITGgg~---GlGr~ialefa~r-g~-----~~vl~Din~~~~~ 76 (300)
T KOG1201|consen 21 LESLIKLLLPKPLKSVSGEIVLITGGGS---GLGRLIALEFAKR-GA-----KLVLWDINKQGNE 76 (300)
T ss_pred HHHHHHHhcccchhhccCCEEEEeCCCc---hHHHHHHHHHHHh-CC-----eEEEEeccccchH
Confidence 3333344444456778889999999865 7888998888774 52 2235555555543
No 467
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=24.84 E-value=80 Score=33.62 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=24.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
--++|+|+|+||+..|-.+... | .++.++|+
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~-----g-------~~v~lie~ 35 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQL-----G-------LKVACIEA 35 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 4689999999999998876543 5 36888886
No 468
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=24.70 E-value=2e+02 Score=28.58 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=17.5
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHH
Q 012532 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAEL 401 (461)
Q Consensus 371 laAlrv~g~~L~d~rivf~GAGsAgiGIA~l 401 (461)
+.++.. ..--.+++++|.|+|+.|...+.+
T Consensus 162 ~~~l~~-~~~~~g~~vlI~g~g~vG~~a~q~ 191 (351)
T cd08233 162 WHAVRR-SGFKPGDTALVLGAGPIGLLTILA 191 (351)
T ss_pred HHHHHh-cCCCCCCEEEEECCCHHHHHHHHH
Confidence 444433 233357899999987655554433
No 469
>PRK11702 hypothetical protein; Provisional
Probab=24.69 E-value=78 Score=28.54 Aligned_cols=32 Identities=9% Similarity=0.318 Sum_probs=22.5
Q ss_pred cchhhhHHHHHHHHH-HHHHh---cCCCeeeEEeeC
Q 012532 305 AIGQEYAELLHEFMT-AVKQN---YGERILIQFEDF 336 (461)
Q Consensus 305 ~~geeY~~fvdEfv~-av~~~---fGp~~lIqfEDF 336 (461)
++-++||.|+|+|+. +|.+. ||.....+||=|
T Consensus 33 ~~~e~~D~~vD~fIde~Ie~ngL~f~G~G~~~~eG~ 68 (108)
T PRK11702 33 TSEEQIDATVDAFIDEVIEPNGLAFDGSGYLAWEGL 68 (108)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCceecCCcceeEEEE
Confidence 566889999999996 67763 555444566644
No 470
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=24.68 E-value=2.1e+02 Score=28.34 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=20.0
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 371 laAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
+.|++.. .--.+++++|.|+|+.|..++.+.
T Consensus 153 ~~~~~~~-~~~~~~~vlV~g~g~iG~~~~~~a 183 (333)
T cd08296 153 FNALRNS-GAKPGDLVAVQGIGGLGHLAVQYA 183 (333)
T ss_pred HHHHHhc-CCCCCCEEEEECCcHHHHHHHHHH
Confidence 3345444 334578999999887776655444
No 471
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=24.64 E-value=80 Score=33.91 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
+++|+|||-||+..|..+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~ 20 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD 20 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 58999999999999988854
No 472
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=24.55 E-value=55 Score=34.96 Aligned_cols=50 Identities=38% Similarity=0.581 Sum_probs=32.3
Q ss_pred ccccCcchHHHHHhcCCCCCceE-----EEEecCceeecc-CCCCCCccccchhhhh
Q 012532 214 ISLKDKGKVLEVLRNWPEKNIQV-----IVVTDGERILGL-GDLGCHGMGIPVGKLS 264 (461)
Q Consensus 214 is~~d~g~i~~il~Nwp~~~v~v-----iVVTDGerILGL-GDlG~~GmgI~iGKl~ 264 (461)
+|-++..++.+|+-. |.+-|.| +.||--.+-|-| ||+|-.|.|||++.+.
T Consensus 42 L~~~e~eklaeI~~~-p~k~VsVe~G~Ev~vt~D~Gt~rldgdqgnsg~gip~sRl~ 97 (466)
T PF09505_consen 42 LSADEMEKLAEILMM-PSKMVSVEQGNEVPVTHDIGTLRLDGDQGNSGVGIPSSRLV 97 (466)
T ss_pred CCHHHHHHHHHHHhC-CCceeeeccCcccceeeccceEEeccccCCCccCcchhhhh
Confidence 444556666666643 4443322 445555555666 9999999999998874
No 473
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=24.41 E-value=6.4e+02 Score=26.45 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCC-CceEEE
Q 012532 310 YAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLA-DQRFLF 388 (461)
Q Consensus 310 Y~~fvdEfv~av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~-d~rivf 388 (461)
+--|+..++..++++ |-+++|..-|+ ....+||+.|.-.+.++...--+.-.-.++.+.-..++...-.+ +-. |+
T Consensus 12 hvhfFk~~I~eL~~~-GheV~it~R~~--~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pD-v~ 87 (335)
T PF04007_consen 12 HVHFFKNIIRELEKR-GHEVLITARDK--DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPD-VA 87 (335)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEEecc--chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-EE
Confidence 345677777777776 67899999998 58899999999898888876644444445544444443322111 123 34
Q ss_pred eCcchH-HHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 389 LGAGEA-GTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 389 ~GAGsA-giGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
+|.|+. +.-+|..+ |+ ..|.+.|..-
T Consensus 88 is~~s~~a~~va~~l--------gi------P~I~f~D~e~ 114 (335)
T PF04007_consen 88 ISFGSPEAARVAFGL--------GI------PSIVFNDTEH 114 (335)
T ss_pred EecCcHHHHHHHHHh--------CC------CeEEEecCch
Confidence 455443 33355443 54 4699999743
No 474
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=24.36 E-value=97 Score=31.78 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=23.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 386 ivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
|||+|+|.||+..|-.+.+ .|. ++.++++...
T Consensus 2 VvVIG~G~AGl~AA~~Aae-----~G~-------~V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAE-----AGA-------KVLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHH-----TTT--------EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhh-----hcC-------eEEEEEeecc
Confidence 7999999999988876644 364 6888888776
No 475
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=24.33 E-value=1e+02 Score=34.73 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=30.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCcccc
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~ 432 (461)
++.+|++|+|.||+--|--+.+. |. +.+||-+..-|--
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~-----G~-------~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM-----GF-------KVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc-----CC-------eEEEEecCCcccc
Confidence 46789999999999988777654 77 5899988877643
No 476
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=23.97 E-value=1.9e+02 Score=29.94 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=21.2
Q ss_pred HHHHHHHhCCC-CCCceEEEeCcchHHHHHHHHH
Q 012532 370 LISAMKFLGGS-LADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 370 llaAlrv~g~~-L~d~rivf~GAGsAgiGIA~li 402 (461)
.+.|++..+.. -.++++++.|+|..|...+.+.
T Consensus 165 a~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~A 198 (375)
T PLN02178 165 VYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIG 198 (375)
T ss_pred HHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHH
Confidence 34555554433 3578999999987776654433
No 477
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=23.89 E-value=1.5e+02 Score=34.13 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCCeeeEEeeCCCc----cHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeC
Q 012532 315 HEFMTAVKQNYGERILIQFEDFANH----NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLG 390 (461)
Q Consensus 315 dEfv~av~~~fGp~~lIqfEDF~~~----nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~G 390 (461)
.+|++.++..+ .+-+ .||.+.. =--.+++||..++-.|+-... .++.|-. ..++.||+++|
T Consensus 72 ~~V~Eli~~L~-~nGF--VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG 136 (637)
T TIGR03693 72 KRVFEIGEILY-KNGF--VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAG 136 (637)
T ss_pred HHHHHHHHHHH-hCCc--eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEe
Confidence 44555555544 3333 3554321 223478999877655544321 1222221 22899999999
Q ss_pred cchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 391 AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 391 AGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
.|..|.-+.-.|+. .|+ .+|..+|.+=.
T Consensus 137 ~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v 164 (637)
T TIGR03693 137 SGDFLTKLVRSLID-----SGF------PRFHAIVTDAE 164 (637)
T ss_pred cCchHHHHHHHHHh-----cCC------CcEEEEecccc
Confidence 99987777666644 376 47888876555
No 478
>PLN02976 amine oxidase
Probab=23.88 E-value=78 Score=39.86 Aligned_cols=59 Identities=24% Similarity=0.314 Sum_probs=39.2
Q ss_pred HHHcCCCceeccCcchHHHHHHHHHHHHHHHh--------CC-------CCCCceEEEeCcchHHHHHHHHHHH
Q 012532 346 EKYGTTHLVFNDDIQGTASVVLAGLISAMKFL--------GG-------SLADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 346 ~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~--------g~-------~L~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+-....-.+=+-|+++|+.|.--.|-+-+.-. +. .-...+|+|+|||.||+..|..|..
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV~IIGAG~AGLaAA~~L~~ 714 (1713)
T PLN02976 641 DALSASPSSSVLDSPETLSVIKPELRNELQSVQSNSCIEMGGNHCVLCDSVDRKKIIVVGAGPAGLTAARHLQR 714 (1713)
T ss_pred hhhccCCccccccCcccccccchhhhcccccchhhhHHhcCCCCCccCCcCCCCcEEEECchHHHHHHHHHHHH
Confidence 33344556667788999888765555433221 11 1223679999999999999988854
No 479
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=23.85 E-value=69 Score=37.43 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=30.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCccccCC
Q 012532 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR 434 (461)
Q Consensus 383 d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R 434 (461)
.+||||+|+|.||+..|+.|...... ..-.|.+++..--+.-+|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~--------~~~~Itvi~~e~~~~Y~r 46 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADA--------ANFDITVFCEEPRIAYDR 46 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCC--------CCCeEEEEECCCCCcccC
Confidence 36899999999999999988643211 113688887765543333
No 480
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=23.83 E-value=97 Score=32.93 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=86.2
Q ss_pred CCCccc-cchhhhhhHhh---------hcCCC------CCCeeeEEeecCCCccccccCcc---cccccccc-----cch
Q 012532 252 GCHGMG-IPVGKLSLYTA---------LGGIR------PSACLPVTIDVGTNNEKLLDDEF---YIGLRQKR-----AIG 307 (461)
Q Consensus 252 G~~Gmg-I~iGKl~LYta---------~gGI~------P~~~LPV~LDvGTnNe~LL~Dpl---YlGlr~~R-----~~g 307 (461)
|-+|.| +|+.--.||.. .|||- |.. =.+-.|+|--|- |=|.+ +.|.+-.+ .+|
T Consensus 138 GGqGAPLvP~~~~~lf~~~~~~~~~lNIGGIaNiT~l~~~~-~~~~fDtGPGN~--liD~~~~~~~~~~yD~~G~~A~~G 214 (364)
T PF03702_consen 138 GGQGAPLVPFFHQLLFRHPKKPRAVLNIGGIANITFLPPGG-DVIGFDTGPGNM--LIDAWIQRHTGLPYDKDGEWAASG 214 (364)
T ss_dssp TS-S---CHHHHHHHH--TTS-EEEEEESSEEEEEEE-TTS---EEEEEEESSH--HHHHHHHHHCS-SS-GGGHHHHCS
T ss_pred cCCCCCcccHHHHHHhCCCCCCEEEEecCCceEEEEecCCC-CceeeccCcHHH--HHHHHHHHHhCCCcCcCcHhhCcC
Confidence 444556 57777777754 35552 222 134668776653 23333 23322222 256
Q ss_pred hhhHHHHHHHHH--HHHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHH-HHHHHHHHHHHhCCCCCCc
Q 012532 308 QEYAELLHEFMT--AVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASV-VLAGLISAMKFLGGSLADQ 384 (461)
Q Consensus 308 eeY~~fvdEfv~--av~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV-~LAgllaAlrv~g~~L~d~ 384 (461)
+-..+++++|++ ..++.. |+. .=-|+|+.....++|+++.. =..|++-|-.- +...+..+++....+ ..
T Consensus 215 ~v~~~ll~~ll~~pyf~~~p-PKS-tGrE~F~~~~l~~~l~~~~~----~~~D~~aTlt~~TA~sI~~~i~~~~~~--~~ 286 (364)
T PF03702_consen 215 KVNEELLDRLLSHPYFKRPP-PKS-TGREDFGLEWLQQILDKFSL----SPEDILATLTEFTAQSIADAIRRFPPQ--PD 286 (364)
T ss_dssp ---HHHHHHHHTSHHHHS-S-S-----TTTSSHHHHHHHCTTSTT-----HHHHHHHHHHHHHHHHHHHHHHH-TT---E
T ss_pred CCCHHHHHHHhcCccccCCC-CCc-CCccccCHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHHhcCCC--Cc
Confidence 777788888886 233333 653 33689987776666666654 27888888654 445555677766544 67
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCCc
Q 012532 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~GL 429 (461)
++++.|.|+=+.-+-+.|.+.+. + -+|...|.-|+
T Consensus 287 ~v~v~GGGa~N~~L~~~L~~~l~---~-------~~v~~~~~~gi 321 (364)
T PF03702_consen 287 EVYVCGGGARNPFLMERLQERLP---G-------IPVKTTDELGI 321 (364)
T ss_dssp EEEEESGGGG-HHHHHHHHHH-T---T-------CEEEEGGGGTS
T ss_pred eEEEECCCcCCHHHHHHHHhhCC---C-------CEEecHHHcCC
Confidence 99999999999999888876642 1 24666666665
No 481
>PRK12828 short chain dehydrogenase; Provisional
Probab=23.80 E-value=1.3e+02 Score=27.46 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=16.5
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHH
Q 012532 380 SLADQRFLFLGA-GEAGTGIAELIA 403 (461)
Q Consensus 380 ~L~d~rivf~GA-GsAgiGIA~li~ 403 (461)
.+++.+++|.|| |..|..+|+.++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~ 28 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA 28 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH
Confidence 467789999998 555555555553
No 482
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=23.69 E-value=91 Score=33.37 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=29.1
Q ss_pred HHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHH
Q 012532 347 KYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELI 402 (461)
Q Consensus 347 rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GA-GsAgiGIA~li 402 (461)
+|....+.+.|=..||+ .++++++++|.|| |..|..+|+.+
T Consensus 157 ~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~L 198 (406)
T PRK07424 157 AYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKEL 198 (406)
T ss_pred ceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHH
Confidence 35667788999888888 2567789999998 44444455544
No 483
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=23.68 E-value=91 Score=30.83 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012532 385 RFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 385 rivf~GAGsAgiGIA~li~~ 404 (461)
+|.|+|+|..|.+||..+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~ 20 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK 20 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH
Confidence 57899999999999998864
No 484
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=23.67 E-value=1e+02 Score=32.55 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
..|+|+|||-+|+.+|-.|.+.- .|. ++.++|++
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~---~G~-------~V~vlE~~ 58 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQR---PAL-------DVLVLEAD 58 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhC---CCC-------eEEEEeCC
Confidence 46999999999999998876530 143 58888875
No 485
>PRK06849 hypothetical protein; Provisional
Probab=23.60 E-value=1e+02 Score=31.79 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=26.9
Q ss_pred CceEEEeCcch-HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCCC
Q 012532 383 DQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (461)
Q Consensus 383 d~rivf~GAGs-AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~G 428 (461)
.++|||.|++. .|+++|+.+..+ |. +++++|++.
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~-----G~-------~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNA-----GH-------TVILADSLK 38 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-----CC-------EEEEEeCCc
Confidence 47999999987 688888877543 65 689999874
No 486
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=23.56 E-value=50 Score=28.11 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=28.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCchhH----HHHHHHHHhhh
Q 012532 136 TVISQELQVKKMLHNIRQYQVPLQK----YMAMMDLQERN 171 (461)
Q Consensus 136 ~v~t~e~Q~~R~~~~~~~~~~~l~K----y~~L~~L~~rN 171 (461)
.|..+|++++||...++.++-.+.| -+||..|-..-
T Consensus 27 svgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkE 66 (79)
T PF09036_consen 27 SVGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKE 66 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567999999999999998877664 46777776553
No 487
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=23.48 E-value=77 Score=32.69 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 012532 381 LADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 381 L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
|++.+|.|+|+|..|-++|..+...
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 5788999999999999999998653
No 488
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=23.18 E-value=3.1e+02 Score=28.00 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=16.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHH
Q 012532 380 SLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li 402 (461)
--.+++++|.|+|+.|...+.+.
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA 223 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALA 223 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH
Confidence 34578999999987777654443
No 489
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.16 E-value=1.5e+02 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=19.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhCCC
Q 012532 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNM 412 (461)
Q Consensus 380 ~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gl 412 (461)
+|++.++||.||+. ||...|+..+.+ .|.
T Consensus 12 ~l~~k~vlItGas~---gIG~~ia~~l~~-~G~ 40 (258)
T PRK06935 12 SLDGKVAIVTGGNT---GLGQGYAVALAK-AGA 40 (258)
T ss_pred cCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC
Confidence 36788999999854 455555555554 364
No 490
>PLN02529 lysine-specific histone demethylase 1
Probab=23.16 E-value=98 Score=35.86 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+..+|+|+|||.||+..|..+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~ 181 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLS 181 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH
Confidence 45689999999999999998865
No 491
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.14 E-value=1e+02 Score=32.41 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=19.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~ 404 (461)
+|-.|+|+|.|-.|+++|+++..
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~ 27 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR 27 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh
Confidence 57789999999999998888764
No 492
>PRK07576 short chain dehydrogenase; Provisional
Probab=23.14 E-value=1.3e+02 Score=28.72 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCCCCceEEEeCc-chHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 379 GSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 379 ~~L~d~rivf~GA-GsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
+++++.+++|.|| |..|..+|+.++ + .|. +++++|+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~----~-~G~-------~V~~~~r 41 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFA----R-AGA-------NVAVASR 41 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEEeC
Confidence 3578889999998 445555555543 3 353 4777765
No 493
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.96 E-value=15 Score=38.89 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=73.4
Q ss_pred HhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhHHHHhhhChhccCCcccchhh--------
Q 012532 124 RNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTV-------- 195 (461)
Q Consensus 124 R~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll~~~~ee~lPIvYTPtV-------- 195 (461)
|..-|||-|+|+-+.-+.+|+.+-+.++..+.|-+.-|--|- .|..+| +.-++..+||-+.|=-+
T Consensus 223 r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL----~N~~iF---vdPY~hqlmPSilTcliakklg~~p 295 (450)
T COG5095 223 RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL----KNKYIF---VDPYLHQLMPSILTCLIAKKLGNVP 295 (450)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----cCCcee---ecHHHHHHHHHHHHHHHHHHhcCCC
Confidence 566799999999999999999999888876666444322111 133333 22345555665555444
Q ss_pred ----------------HHHHHHHhhhhcC--CCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCCccc
Q 012532 196 ----------------GEACQKYGSIYSR--PQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMG 257 (461)
Q Consensus 196 ----------------G~aC~~~s~i~r~--p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~Gmg 257 (461)
+-+|.+||+.|.. || -.+.+++-|-.++ =.--|-=+++-||-=++-..+-
T Consensus 296 ~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPR----------vtrTllKafLD~~--k~~sT~YGalkgls~l~ke~ir 363 (450)
T COG5095 296 DDHEHYALRDVAADLLKYVFSNFSSSYKTLKPR----------VTRTLLKAFLDRE--KTESTQYGALKGLSILSKEVIR 363 (450)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhHhhhhhchH----------HHHHHHHHHHhcc--cccchhhhhhhhhhhhchhhee
Confidence 4578888877654 43 3556666663211 1122333445555444444444
Q ss_pred cchh-hhhhHhhh
Q 012532 258 IPVG-KLSLYTAL 269 (461)
Q Consensus 258 I~iG-Kl~LYta~ 269 (461)
.-++ ++..|...
T Consensus 364 ~~i~pn~~~y~rl 376 (450)
T COG5095 364 TVIKPNADYYVRL 376 (450)
T ss_pred eeeccchHHHHHH
Confidence 4444 55555443
No 494
>PRK10262 thioredoxin reductase; Provisional
Probab=22.96 E-value=1.3e+02 Score=29.93 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 012532 382 ADQRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 382 ~d~rivf~GAGsAgiGIA~li~~ 404 (461)
.+++++|+|+|..|+-+|..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~ 167 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSN 167 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh
Confidence 57899999999999999888754
No 495
>PLN02602 lactate dehydrogenase
Probab=22.94 E-value=1.1e+02 Score=32.21 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcC
Q 012532 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs 426 (461)
.||.|+|||..|..+|-.|+. .|+. ..|.|+|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDLA-----DELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeC
Confidence 499999999999999998753 2552 47999997
No 496
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=22.90 E-value=1.8e+02 Score=28.38 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHH
Q 012532 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 402 (461)
Q Consensus 366 ~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li 402 (461)
.+++.+++++.. .--+++++++.|+|+.|..++++.
T Consensus 140 ~~~~~~~~~~~~-~~~~g~~vlV~g~g~vg~~~~q~a 175 (319)
T cd08242 140 PLAAALEILEQV-PITPGDKVAVLGDGKLGLLIAQVL 175 (319)
T ss_pred HHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHH
Confidence 344445555443 334678999999887666655443
No 497
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=22.88 E-value=1e+02 Score=31.17 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.0
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012532 384 QRFLFLGAGEAGTGIAELIAL 404 (461)
Q Consensus 384 ~rivf~GAGsAgiGIA~li~~ 404 (461)
.||+|+|||+.|.=+|-.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~ 23 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR 23 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 479999999999988887754
No 498
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=22.84 E-value=1.1e+02 Score=32.48 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHH
Q 012532 379 GSLADQRFLFLGAGEAGTGIAELIALE 405 (461)
Q Consensus 379 ~~L~d~rivf~GAGsAgiGIA~li~~~ 405 (461)
..|++.+|.|+|-|+.|.++|+.+...
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~ 38 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS 38 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 457899999999999999999998654
No 499
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.83 E-value=1.2e+02 Score=29.42 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCCceEEEeCcch---HHHHHHHHHHHHHHHhCCCChhhhcCcEEEEcCC
Q 012532 381 LADQRFLFLGAGE---AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (461)
Q Consensus 381 L~d~rivf~GAGs---AgiGIA~li~~~m~~~~Gls~eeAr~~i~lvDs~ 427 (461)
++++++||-||++ .|.+||+.+++ +|. ++.++|++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~-----~G~-------~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHR-----EGA-------ELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHH-----CCC-------EEEEEecc
Confidence 7788999999975 44446666643 363 46666653
No 500
>PRK12939 short chain dehydrogenase; Provisional
Probab=22.78 E-value=1.5e+02 Score=27.48 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=18.3
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHH
Q 012532 380 SLADQRFLFLGA-GEAGTGIAELIAL 404 (461)
Q Consensus 380 ~L~d~rivf~GA-GsAgiGIA~li~~ 404 (461)
.+++.+++|.|| |..|..+|+.++.
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~ 29 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAE 29 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHH
Confidence 366789999997 6677777777653
Done!