Query 012533
Match_columns 461
No_of_seqs 181 out of 1711
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.5 3.9E-16 8.5E-21 139.8 -2.7 169 18-210 98-272 (419)
2 KOG4341 F-box protein containi 99.3 3.3E-14 7.2E-19 133.1 -5.8 341 19-429 73-435 (483)
3 smart00579 FBD domain in FBox 99.2 2.5E-11 5.4E-16 89.2 6.6 67 390-456 1-72 (72)
4 PF08387 FBD: FBD; InterPro: 99.1 8.1E-11 1.8E-15 79.4 4.0 49 381-429 1-51 (51)
5 PF12937 F-box-like: F-box-lik 98.7 1.5E-08 3.3E-13 67.4 3.8 36 18-53 1-36 (47)
6 PF00646 F-box: F-box domain; 98.3 4.3E-07 9.3E-12 60.7 2.1 37 18-54 3-39 (48)
7 PLN00113 leucine-rich repeat r 98.2 2.3E-06 5.1E-11 95.3 6.9 35 174-208 185-222 (968)
8 smart00256 FBOX A Receptor for 98.1 2.4E-06 5.1E-11 54.9 2.8 33 21-53 1-33 (41)
9 PLN00113 leucine-rich repeat r 98.0 5.7E-06 1.2E-10 92.2 5.8 220 122-371 332-582 (968)
10 cd00116 LRR_RI Leucine-rich re 98.0 1.5E-06 3.2E-11 83.9 0.4 35 175-210 79-120 (319)
11 PLN03210 Resistant to P. syrin 97.9 2E-05 4.4E-10 88.8 7.8 59 152-210 609-669 (1153)
12 KOG4194 Membrane glycoprotein 97.9 5.7E-06 1.2E-10 81.8 2.1 24 395-418 440-467 (873)
13 PLN03210 Resistant to P. syrin 97.9 4.5E-05 9.8E-10 86.0 9.0 82 150-232 630-714 (1153)
14 KOG4341 F-box protein containi 97.4 8.6E-06 1.9E-10 77.4 -4.5 255 95-370 166-436 (483)
15 KOG4194 Membrane glycoprotein 97.3 4.4E-05 9.5E-10 75.7 -0.1 129 143-276 114-252 (873)
16 cd00116 LRR_RI Leucine-rich re 97.3 2.2E-05 4.8E-10 75.6 -3.2 34 177-210 108-149 (319)
17 KOG1909 Ran GTPase-activating 97.2 0.00021 4.6E-09 66.7 2.6 241 81-370 19-280 (382)
18 PF14580 LRR_9: Leucine-rich r 96.8 0.00074 1.6E-08 58.5 2.6 66 296-370 83-150 (175)
19 KOG3207 Beta-tubulin folding c 96.7 0.00051 1.1E-08 66.1 0.4 71 292-371 163-233 (505)
20 KOG3207 Beta-tubulin folding c 96.6 0.0001 2.2E-09 70.7 -4.8 81 151-232 143-232 (505)
21 KOG1947 Leucine rich repeat pr 96.6 0.00013 2.7E-09 74.6 -4.8 180 175-362 186-389 (482)
22 KOG1947 Leucine rich repeat pr 96.6 8.3E-05 1.8E-09 76.0 -6.1 40 15-54 42-81 (482)
23 KOG1259 Nischarin, modulator o 96.2 0.0026 5.5E-08 58.5 2.2 201 144-370 172-409 (490)
24 PRK15370 E3 ubiquitin-protein 96.2 0.0068 1.5E-07 64.7 5.4 185 143-370 190-377 (754)
25 KOG2982 Uncharacterized conser 96.2 0.0016 3.4E-08 59.8 0.5 219 174-417 68-307 (418)
26 PRK15387 E3 ubiquitin-protein 96.1 0.019 4.1E-07 61.3 8.2 102 143-261 213-315 (788)
27 KOG2120 SCF ubiquitin ligase, 95.9 0.00035 7.6E-09 64.0 -4.9 149 95-258 212-373 (419)
28 PRK15370 E3 ubiquitin-protein 95.6 0.0077 1.7E-07 64.3 2.8 35 336-370 389-425 (754)
29 PF13855 LRR_8: Leucine rich r 95.4 0.016 3.4E-07 40.6 3.0 35 174-208 22-59 (61)
30 KOG3665 ZYG-1-like serine/thre 95.2 0.0056 1.2E-07 64.7 0.2 153 248-428 122-283 (699)
31 KOG0444 Cytoskeletal regulator 95.1 0.00061 1.3E-08 68.4 -6.7 18 297-314 169-186 (1255)
32 KOG0618 Serine/threonine phosp 95.1 0.0011 2.4E-08 69.6 -5.2 68 110-188 254-321 (1081)
33 KOG3665 ZYG-1-like serine/thre 95.1 0.0041 8.8E-08 65.7 -1.3 113 245-368 170-283 (699)
34 KOG2982 Uncharacterized conser 94.8 0.013 2.7E-07 54.1 1.4 68 292-370 88-156 (418)
35 PF07723 LRR_2: Leucine Rich R 94.7 0.023 5E-07 32.1 1.8 21 178-198 1-26 (26)
36 PRK15387 E3 ubiquitin-protein 94.0 0.056 1.2E-06 57.8 4.2 54 198-261 302-355 (788)
37 KOG2123 Uncharacterized conser 94.0 0.0027 5.8E-08 57.8 -4.8 101 249-368 20-125 (388)
38 KOG0444 Cytoskeletal regulator 93.7 0.00069 1.5E-08 68.0 -9.8 86 143-232 162-255 (1255)
39 KOG2997 F-box protein FBX9 [Ge 93.5 0.05 1.1E-06 50.4 2.3 37 15-51 104-145 (366)
40 PF14580 LRR_9: Leucine-rich r 93.1 0.067 1.5E-06 46.3 2.5 108 299-429 40-149 (175)
41 PF13855 LRR_8: Leucine rich r 92.7 0.18 3.9E-06 35.1 3.8 56 123-187 2-59 (61)
42 KOG0281 Beta-TrCP (transducin 92.3 0.065 1.4E-06 50.1 1.3 37 15-51 72-112 (499)
43 PLN03215 ascorbic acid mannose 91.9 0.11 2.4E-06 50.4 2.5 37 18-54 4-41 (373)
44 KOG2739 Leucine-rich acidic nu 91.1 0.079 1.7E-06 48.1 0.6 66 193-261 38-104 (260)
45 KOG1909 Ran GTPase-activating 90.6 0.59 1.3E-05 44.4 5.8 39 392-430 239-280 (382)
46 KOG1259 Nischarin, modulator o 89.8 0.59 1.3E-05 43.4 5.1 57 175-232 180-247 (490)
47 KOG0617 Ras suppressor protein 89.2 0.013 2.8E-07 49.6 -5.6 59 149-207 28-88 (264)
48 PLN03150 hypothetical protein; 88.8 0.44 9.5E-06 50.4 4.0 78 155-233 419-501 (623)
49 PF12799 LRR_4: Leucine Rich r 88.0 0.37 7.9E-06 31.1 1.8 33 177-209 1-35 (44)
50 KOG0618 Serine/threonine phosp 86.1 0.086 1.9E-06 56.0 -3.0 65 144-208 81-147 (1081)
51 COG5238 RNA1 Ran GTPase-activa 85.7 1.1 2.3E-05 41.3 4.0 172 174-369 89-281 (388)
52 KOG4658 Apoptotic ATPase [Sign 84.2 0.45 9.7E-06 52.1 1.2 67 143-209 584-653 (889)
53 KOG1644 U2-associated snRNP A' 82.3 2.8 6.1E-05 36.9 5.0 56 153-209 63-124 (233)
54 PF12799 LRR_4: Leucine Rich r 82.3 0.94 2E-05 29.2 1.7 34 155-188 2-35 (44)
55 KOG4658 Apoptotic ATPase [Sign 82.2 0.15 3.3E-06 55.6 -3.3 123 151-279 542-678 (889)
56 KOG0274 Cdc4 and related F-box 81.2 0.75 1.6E-05 47.4 1.4 40 12-51 102-141 (537)
57 COG4886 Leucine-rich repeat (L 80.9 0.5 1.1E-05 46.9 0.0 165 153-345 115-287 (394)
58 KOG0617 Ras suppressor protein 79.7 0.11 2.3E-06 44.2 -4.4 61 122-191 56-117 (264)
59 KOG2739 Leucine-rich acidic nu 79.5 0.63 1.4E-05 42.4 0.2 70 294-372 84-155 (260)
60 smart00367 LRR_CC Leucine-rich 79.4 0.71 1.5E-05 25.8 0.3 14 197-210 1-14 (26)
61 PLN03150 hypothetical protein; 78.3 1.9 4.1E-05 45.7 3.3 81 178-260 419-502 (623)
62 PRK15386 type III secretion pr 78.2 6.4 0.00014 39.0 6.6 68 122-206 52-120 (426)
63 KOG3864 Uncharacterized conser 77.7 0.26 5.7E-06 43.1 -2.7 37 174-210 122-163 (221)
64 PRK15386 type III secretion pr 76.7 4 8.7E-05 40.4 4.8 31 335-369 156-186 (426)
65 KOG2123 Uncharacterized conser 76.5 0.063 1.4E-06 49.2 -7.0 77 223-310 20-97 (388)
66 PF13013 F-box-like_2: F-box-l 75.1 2 4.3E-05 33.9 1.8 30 17-46 21-50 (109)
67 KOG1644 U2-associated snRNP A' 70.8 8.4 0.00018 34.0 4.8 16 245-260 110-125 (233)
68 KOG3864 Uncharacterized conser 64.2 0.44 9.6E-06 41.7 -4.2 64 193-257 120-185 (221)
69 COG5238 RNA1 Ran GTPase-activa 62.1 23 0.0005 32.9 6.0 123 292-429 83-223 (388)
70 PF08387 FBD: FBD; InterPro: 59.7 10 0.00022 25.2 2.6 34 335-368 14-50 (51)
71 KOG0472 Leucine-rich repeat pr 54.9 2.5 5.5E-05 41.1 -1.3 36 333-370 503-538 (565)
72 KOG4237 Extracellular matrix p 52.3 7.7 0.00017 37.8 1.4 45 143-187 79-125 (498)
73 COG4886 Leucine-rich repeat (L 48.2 6.9 0.00015 38.8 0.4 154 143-313 128-289 (394)
74 PF13516 LRR_6: Leucine Rich r 47.7 7.2 0.00016 21.0 0.3 13 197-209 1-13 (24)
75 PF13504 LRR_7: Leucine rich r 46.8 8.4 0.00018 19.0 0.4 11 199-209 2-12 (17)
76 KOG4408 Putative Mg2+ and Co2+ 42.6 8 0.00017 36.6 -0.1 39 18-56 8-46 (386)
77 smart00579 FBD domain in FBox 41.8 34 0.00073 24.4 3.2 37 335-371 5-44 (72)
78 PF09372 PRANC: PRANC domain; 41.3 21 0.00046 27.3 2.1 25 16-40 70-94 (97)
79 PF13306 LRR_5: Leucine rich r 36.7 57 0.0012 25.9 4.2 54 153-207 11-67 (129)
80 KOG0472 Leucine-rich repeat pr 35.2 3.5 7.7E-05 40.2 -3.6 110 143-259 195-308 (565)
81 KOG4237 Extracellular matrix p 28.6 8.9 0.00019 37.4 -2.2 51 156-207 69-124 (498)
82 KOG1859 Leucine-rich repeat pr 28.3 1.9 4E-05 45.3 -7.1 103 198-313 187-291 (1096)
83 KOG3926 F-box proteins [Amino 24.2 56 0.0012 30.1 2.1 49 15-63 199-254 (332)
84 COG4829 CatC1 Muconolactone de 23.9 22 0.00047 26.3 -0.4 35 21-55 11-47 (98)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.9e-16 Score=139.80 Aligned_cols=169 Identities=16% Similarity=0.176 Sum_probs=93.8
Q ss_pred cCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhccCCeeEeeccccccCCCCCCCcccchHHHHHHHHHhcCcCCcce
Q 012533 18 ISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISK 97 (461)
Q Consensus 18 is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~i~~ 97 (461)
+..|||||+..||+.|+.+|+.+.+.|||||+++-..-. ++...+. .+ ..--.+...+++ ++ | |..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~-lW~~lDl-------~~---r~i~p~~l~~l~-~r-g-V~v 163 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES-LWQTLDL-------TG---RNIHPDVLGRLL-SR-G-VIV 163 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc-ceeeecc-------CC---CccChhHHHHHH-hC-C-eEE
Confidence 678999999999999999999999999999997543221 1111100 00 000122333333 22 2 334
Q ss_pred EEEEeccCCCCcchHHHHHHHHHhCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEeccc-ccccCCCCcccC
Q 012533 98 FSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETD-FVFKSPSSGICF 176 (461)
Q Consensus 98 l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~~~~~p~~~~~~ 176 (461)
|++. ....+...+..... ..+.+++++++.+. ....-.+.-.+..|..|+.|+|.+. .+..+....+.-
T Consensus 164 ~Rla--r~~~~~prlae~~~-~frsRlq~lDLS~s-------~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN 233 (419)
T KOG2120|consen 164 FRLA--RSFMDQPRLAEHFS-PFRSRLQHLDLSNS-------VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN 233 (419)
T ss_pred EEcc--hhhhcCchhhhhhh-hhhhhhHHhhcchh-------heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc
Confidence 4433 21122222222211 13346788887764 2223334444455777777777621 111001112456
Q ss_pred cccceEEeceee-cCC--c--ccCCCCccceEEEEeecC
Q 012533 177 PRVKKFHVEIYK-PNM--P--DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 177 ~~L~~L~L~~~~-~~~--~--lls~cp~Le~L~L~~c~~ 210 (461)
.+|+.|+|+.+. ..+ + ++++|..|.+|+|..|..
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 778888888887 332 2 788888888888888865
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.31 E-value=3.3e-14 Score=133.12 Aligned_cols=341 Identities=15% Similarity=0.077 Sum_probs=192.4
Q ss_pred CCCChHHHHHHHcCCChHhHhhhcccchhhHHHh------ccCCeeEeeccccccCCCCCCCcccchH-HHHHHHHHhcC
Q 012533 19 SCMPDSILCHILSFLSTEDAVRTSILSSRWKLVW------ASLPNLMFNDKLCYRRDGTSDNGALTRF-ENFVDRMLLSN 91 (461)
Q Consensus 19 s~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw------~~~p~l~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~ 91 (461)
-.||+|++..|||+|+++...|++++|+.|..+. ....-.+|.. +. -..|..++.+.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r----------------Dv~g~VV~~~~~Rc 136 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR----------------DVDGGVVENMISRC 136 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh----------------cCCCcceehHhhhh
Confidence 3599999999999999999999999999998653 2222222211 11 12344444444
Q ss_pred cCCcceEEEEeccCCCCcchHHHHHHHHH--hCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEeccc---cc
Q 012533 92 SVSISKFSLHCQKKPRYLSRLKFWVALAI--MRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETD---FV 166 (461)
Q Consensus 92 ~~~i~~l~l~~~~~~~~~~~~~~wl~~a~--~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~---~~ 166 (461)
.+.++.++++......+.. +..+. .+++++|.+..+....+. ....+. -.|.+|++|.|... .+
T Consensus 137 gg~lk~LSlrG~r~v~~ss-----lrt~~~~CpnIehL~l~gc~~iTd~---s~~sla---~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSS-----LRTFASNCPNIEHLALYGCKKITDS---SLLSLA---RYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred ccccccccccccccCCcch-----hhHHhhhCCchhhhhhhcceeccHH---HHHHHH---HhcchhhhhhhcccchhHH
Confidence 4449999998876433211 22222 368888866553210000 011111 12777777777621 11
Q ss_pred ccCCCCcccCcccceEEeceee--cCC-c--ccCCCCccceEEEEeecCCCCCcee-Eee--cccccEEEEeeccccccc
Q 012533 167 FKSPSSGICFPRVKKFHVEIYK--PNM-P--DFSICPVLEDLSIDYSLNFDWDADI-SIS--SQTLKRLNLMIGGPIVFA 238 (461)
Q Consensus 167 ~~~p~~~~~~~~L~~L~L~~~~--~~~-~--lls~cp~Le~L~L~~c~~~~~~~~l-~i~--~~~L~~L~l~~~~~~~~~ 238 (461)
..+-..+.+||+|+.|+++++. .++ + +..+|..|+.+.+++|... ..+.+ .+. ++-+.++.+..|..+.+.
T Consensus 206 ~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 206 VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-ELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-cHHHHHHHhccChHhhccchhhhccccch
Confidence 1111233678888888888888 332 3 8888888888888888662 12222 111 222333343333222222
Q ss_pred CceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhcccc
Q 012533 239 NEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGE 318 (461)
Q Consensus 239 ~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~ 318 (461)
+...+.-.+-.|+.|.+.+... .....+..+-..+++|+.|.+..+..-.
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~---------------------------~~d~~l~aLg~~~~~L~~l~l~~c~~fs--- 334 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTD---------------------------ITDEVLWALGQHCHNLQVLELSGCQQFS--- 334 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCC---------------------------CchHHHHHHhcCCCceEEEeccccchhh---
Confidence 2222222334444444443210 0112567788889999999998765220
Q ss_pred chhhhhccccccC-CCCCCeeEEEEEEeccCcch-hhHHhhcCCCCceeEEEeeecCCCcccccCccCCcccccccccce
Q 012533 319 AYRHLYDAHQYFL-PTFSNLSFLEVRIREYGWWI-LPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNV 396 (461)
Q Consensus 319 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~L 396 (461)
-..+. ++ .....|+.|++..++...+. +.++-.+||.|++|.++......+ . ....-....|-..+|
T Consensus 335 ----d~~ft--~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD----~-gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 335 ----DRGFT--MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD----E-GIRHLSSSSCSLEGL 403 (483)
T ss_pred ----hhhhh--hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh----h-hhhhhhhcccccccc
Confidence 00000 22 34578888999988775555 899999999999999985432111 0 011111224556778
Q ss_pred EEEEEEeCCCCchHHHHHHHhcCcCCceEEEEe
Q 012533 397 KKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 397 k~v~i~~g~~~e~~l~~~ll~~a~~Le~~~i~~ 429 (461)
...|+.....-..+..++ +.+++.||++.+.-
T Consensus 404 ~~lEL~n~p~i~d~~Le~-l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEH-LSICRNLERIELID 435 (483)
T ss_pred ceeeecCCCCchHHHHHH-HhhCcccceeeeec
Confidence 888887222222334444 47788999977665
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.23 E-value=2.5e-11 Score=89.24 Aligned_cols=67 Identities=34% Similarity=0.556 Sum_probs=59.7
Q ss_pred cccccceEEEEEE--eCCCCchHHHHHHHhcCcCCceEEEEeecCC--h-HHHHHHHhcCCCCCceeEEEEc
Q 012533 390 YCLQFNVKKIEIL--YGDDDPLEPVKYLLKNCGVLDKMIFRYVGES--S-NELCKELLMFPRGSKTCEVELR 456 (461)
Q Consensus 390 ~c~~~~Lk~v~i~--~g~~~e~~l~~~ll~~a~~Le~~~i~~~~~~--~-~~~~~~l~~~~r~s~~~~~~~~ 456 (461)
+|+.++|++|+|. .|..+|++|++||++||+.||+|+|..++.. + ..+.++|..++|||++|++.|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 4788899999999 8999999999999999999999999996432 2 6778999999999999999874
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.10 E-value=8.1e-11 Score=79.45 Aligned_cols=49 Identities=45% Similarity=0.753 Sum_probs=45.8
Q ss_pred CccCCcccccccccceEEEEEE--eCCCCchHHHHHHHhcCcCCceEEEEe
Q 012533 381 GWIEPQFVPYCLQFNVKKIEIL--YGDDDPLEPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 381 ~w~~~~~~~~c~~~~Lk~v~i~--~g~~~e~~l~~~ll~~a~~Le~~~i~~ 429 (461)
+|.++..+|+|+.+|||.|+|. .|..+|++|++||++||++||+|+|..
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 4878888999999999999999 899999999999999999999999963
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.71 E-value=1.5e-08 Score=67.44 Aligned_cols=36 Identities=39% Similarity=0.748 Sum_probs=31.5
Q ss_pred cCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhc
Q 012533 18 ISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWA 53 (461)
Q Consensus 18 is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~ 53 (461)
|+.||+||+.+||++|+.+|.++++.|||+|+.+..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998653
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.27 E-value=4.3e-07 Score=60.75 Aligned_cols=37 Identities=43% Similarity=0.744 Sum_probs=31.3
Q ss_pred cCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhcc
Q 012533 18 ISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWAS 54 (461)
Q Consensus 18 is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~~ 54 (461)
+++||+|++.+||++|+.+|.++++.|||+|+.+...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 6789999999999999999999999999999987654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.19 E-value=2.3e-06 Score=95.28 Aligned_cols=35 Identities=6% Similarity=0.090 Sum_probs=15.4
Q ss_pred ccCcccceEEeceee-cCCc--ccCCCCccceEEEEee
Q 012533 174 ICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYS 208 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c 208 (461)
..+++|++|+|.++. .+.. .+..+++|+.|.|.++
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 344444444444444 3322 3344444444444444
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.10 E-value=2.4e-06 Score=54.88 Aligned_cols=33 Identities=39% Similarity=0.634 Sum_probs=31.2
Q ss_pred CChHHHHHHHcCCChHhHhhhcccchhhHHHhc
Q 012533 21 MPDSILCHILSFLSTEDAVRTSILSSRWKLVWA 53 (461)
Q Consensus 21 LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~ 53 (461)
||+|++.+||++|+.+|.++++.+||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998764
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.02 E-value=5.7e-06 Score=92.22 Aligned_cols=220 Identities=14% Similarity=0.089 Sum_probs=108.3
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSIC 197 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~c 197 (461)
.+++.|.+.... -...+|..+....+|+.|+|+. ...-..|.....+++|+.|++.+.. .+.. .+..|
T Consensus 332 ~~L~~L~L~~n~--------l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 332 PRLQVLQLWSNK--------FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred CCCCEEECcCCC--------CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 467888776531 1224555555567777777762 1111223333445566666666655 4433 45556
Q ss_pred CccceEEEEeecCC-----------------------CCC-ceeEeecccccEEEEeecccccccCceeEEEecCCceEE
Q 012533 198 PVLEDLSIDYSLNF-----------------------DWD-ADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHL 253 (461)
Q Consensus 198 p~Le~L~L~~c~~~-----------------------~~~-~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L 253 (461)
+.|+.|.+.+|..- .+. .......++|+.|.+.++... +...-....++|+.|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~---~~~p~~~~~~~L~~L 480 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF---GGLPDSFGSKRLENL 480 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee---eecCcccccccceEE
Confidence 66666666555430 000 000011344555554443221 000011233455556
Q ss_pred EEecceece---eeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhcccccc
Q 012533 254 HVNDGTLVS---YLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYF 330 (461)
Q Consensus 254 ~l~~~~~~~---~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~ 330 (461)
++++..... ..+.++++|+.+.+..+.-.+ .+..-+..+++++.|.|+.+.+. ... +..
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~Ls~N~l~-------~~~---p~~ 542 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG--------EIPDELSSCKKLVSLDLSHNQLS-------GQI---PAS 542 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCCccee--------eCChHHcCccCCCEEECCCCccc-------ccC---Chh
Confidence 555443321 123345555555554432110 11223456777778877766554 111 113
Q ss_pred CCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeee
Q 012533 331 LPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 331 ~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
+..+++|+.|+|..+... ..+...+...++|+.|.|....
T Consensus 543 ~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLS-GEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred HhCcccCCEEECCCCccc-ccCChhHhcCcccCEEeccCCc
Confidence 445677888888765432 1244556677889999887653
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.00 E-value=1.5e-06 Score=83.86 Aligned_cols=35 Identities=6% Similarity=-0.101 Sum_probs=19.8
Q ss_pred cCcccceEEeceee-cCCc------ccCCCCccceEEEEeecC
Q 012533 175 CFPRVKKFHVEIYK-PNMP------DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~~~~------lls~cp~Le~L~L~~c~~ 210 (461)
.+++|+.|+|+++. .++. +... |.|++|++.+|..
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~ 120 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGL 120 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCcc
Confidence 35567777776666 4322 2333 5577777766643
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.92 E-value=2e-05 Score=88.76 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=27.7
Q ss_pred ccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc-ccCCCCccceEEEEeecC
Q 012533 152 NSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 152 ~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~~ 210 (461)
...+|+.|++....--.+|.....+++|+.|+|+++. ...+ -++.+++|+.|.|.+|..
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSS 669 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCC
Confidence 3455666655521111123333445555555555544 3333 344555555555555543
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.88 E-value=5.7e-06 Score=81.80 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=14.9
Q ss_pred ceEEEEEE----eCCCCchHHHHHHHhc
Q 012533 395 NVKKIEIL----YGDDDPLEPVKYLLKN 418 (461)
Q Consensus 395 ~Lk~v~i~----~g~~~e~~l~~~ll~~ 418 (461)
+||++.+. -++.+-..|...+.++
T Consensus 440 ~Lk~Lv~nSssflCDCql~Wl~qWl~~~ 467 (873)
T KOG4194|consen 440 ELKELVMNSSSFLCDCQLKWLAQWLYRR 467 (873)
T ss_pred hhhhhhhcccceEEeccHHHHHHHHHhc
Confidence 78888887 3445555566665554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=4.5e-05 Score=86.01 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=36.4
Q ss_pred ccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEeecccccE
Q 012533 150 IYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISISSQTLKR 226 (461)
Q Consensus 150 l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~ 226 (461)
+..+.+|+.|+|+....+...|....+++|++|+|.+|. ...+ -+..++.|+.|.+.+|..+..+.. .+..++|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCE
Confidence 334555555555522111111222345555555555555 3333 445555555555555544211111 113345555
Q ss_pred EEEeec
Q 012533 227 LNLMIG 232 (461)
Q Consensus 227 L~l~~~ 232 (461)
|.+.+|
T Consensus 709 L~Lsgc 714 (1153)
T PLN03210 709 LNLSGC 714 (1153)
T ss_pred EeCCCC
Confidence 555544
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.37 E-value=8.6e-06 Score=77.44 Aligned_cols=255 Identities=16% Similarity=0.046 Sum_probs=155.8
Q ss_pred cceEEEEeccCCCCcchHHHHHHHHH-hCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccc---cCC
Q 012533 95 ISKFSLHCQKKPRYLSRLKFWVALAI-MRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVF---KSP 170 (461)
Q Consensus 95 i~~l~l~~~~~~~~~~~~~~wl~~a~-~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~---~~p 170 (461)
|..+.+.+...-++ ......+. .++++++.+..+. .+....|-...-+|++|.+|.++..+.. .+-
T Consensus 166 IehL~l~gc~~iTd----~s~~sla~~C~~l~~l~L~~c~------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 166 IEHLALYGCKKITD----SSLLSLARYCRKLRHLNLHSCS------SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred hhhhhhhcceeccH----HHHHHHHHhcchhhhhhhcccc------hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch
Confidence 77777766542221 12222222 2578888876642 2222233333345999999999822111 112
Q ss_pred CCcccCcccceEEeceee-cCC-c---ccCCCCccceEEEEeecCCCCCceeEee--cccccEEEEeecccccccCceeE
Q 012533 171 SSGICFPRVKKFHVEIYK-PNM-P---DFSICPVLEDLSIDYSLNFDWDADISIS--SQTLKRLNLMIGGPIVFANEHQA 243 (461)
Q Consensus 171 ~~~~~~~~L~~L~L~~~~-~~~-~---lls~cp~Le~L~L~~c~~~~~~~~l~i~--~~~L~~L~l~~~~~~~~~~~~~~ 243 (461)
+...++..|+.+.+.+|. .++ . +-..|+.+-++++..|..+.+...+.+. +..|+.|...++...++.....+
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL 315 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL 315 (483)
T ss_pred HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence 234677889999899988 443 3 7788999999999999764433333333 67788888887765444444445
Q ss_pred EEecCCceEEEEecceec-----eeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhcccc
Q 012533 244 TIEAPKLEHLHVNDGTLV-----SYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGE 318 (461)
Q Consensus 244 ~i~ap~L~~L~l~~~~~~-----~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~ 318 (461)
--.+++|..|.+.++.-. ...-.+.+.|++..+.-+..... ..+..+-..++.++.|.++-+... +++
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d------~tL~sls~~C~~lr~lslshce~i-tD~ 388 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD------GTLASLSRNCPRLRVLSLSHCELI-TDE 388 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh------hhHhhhccCCchhccCChhhhhhh-hhh
Confidence 557899999999876421 11224677777777665533211 146777788999999999833222 011
Q ss_pred chhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 319 AYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
-+..+.. ..-....|..|++..+....+...+.+..||+||.+++...
T Consensus 389 gi~~l~~----~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 389 GIRHLSS----SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhhhhhh----ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 0001111 11234667777777777788888999999999999666553
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.34 E-value=4.4e-05 Score=75.72 Aligned_cols=129 Identities=18% Similarity=0.144 Sum_probs=53.9
Q ss_pred cccCCCcccccCcccEEEecc--cccccCCCCcccCcccceEEeceee-cC-Cc-ccCCCCccceEEEEeecCCCCCcee
Q 012533 143 PVELPDCIYNSETLEILKLET--DFVFKSPSSGICFPRVKKFHVEIYK-PN-MP-DFSICPVLEDLSIDYSLNFDWDADI 217 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~--~~~~~~p~~~~~~~~L~~L~L~~~~-~~-~~-lls~cp~Le~L~L~~c~~~~~~~~l 217 (461)
...+|.......+|+.|.|.. ..... ......+|.|++|+|+.-. .. .. -+..-+.+++|.|.+-+. .+++.=
T Consensus 114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~-se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~ 191 (873)
T KOG4194|consen 114 LTRIPRFGHESGHLEKLDLRHNLISSVT-SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI-TTLETG 191 (873)
T ss_pred hhhcccccccccceeEEeeecccccccc-HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc-cccccc
Confidence 344554433355566666651 11100 0011345666666665554 22 11 445555666666655432 222111
Q ss_pred Eee-cccccEEEEeecccccccCceeEEE-ecCCceEEEEecceec---eeeeeCCCCceEEEE
Q 012533 218 SIS-SQTLKRLNLMIGGPIVFANEHQATI-EAPKLEHLHVNDGTLV---SYLVYELHSLCDARL 276 (461)
Q Consensus 218 ~i~-~~~L~~L~l~~~~~~~~~~~~~~~i-~ap~L~~L~l~~~~~~---~~~l~~~~~L~~~~i 276 (461)
... ..+|-.|.+..... .......+ .-|+|++|++...... ...+..+++|+.+.+
T Consensus 192 ~F~~lnsL~tlkLsrNri---ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRI---TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred cccccchheeeecccCcc---cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 111 13555555554322 11111112 2566666666543321 223344444444433
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.26 E-value=2.2e-05 Score=75.60 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=19.7
Q ss_pred cccceEEeceee-cCCc------ccCCC-CccceEEEEeecC
Q 012533 177 PRVKKFHVEIYK-PNMP------DFSIC-PVLEDLSIDYSLN 210 (461)
Q Consensus 177 ~~L~~L~L~~~~-~~~~------lls~c-p~Le~L~L~~c~~ 210 (461)
++|++|++.++. .++. .+..+ |.|++|.+.+|..
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 347777777666 4321 23444 6777777777653
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.20 E-value=0.00021 Score=66.71 Aligned_cols=241 Identities=18% Similarity=0.165 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCcCCcceEEEEeccCCCCcchHHHHHHHHHhC--CceEEEEEccCCCCCCCCCccccCCCcccccCcccE
Q 012533 81 ENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMR--NVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEI 158 (461)
Q Consensus 81 ~~~v~~~L~~~~~~i~~l~l~~~~~~~~~~~~~~wl~~a~~~--~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~ 158 (461)
..-|...+..... +..+.+.. .+...-..+|++...+. .+++..+..-.. ......+|..+-.
T Consensus 19 ~~~v~~~~~~~~s-~~~l~lsg---nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ft-----GR~~~Ei~e~L~~------ 83 (382)
T KOG1909|consen 19 EKDVEEELEPMDS-LTKLDLSG---NTFGTEAARAIAKVLASKKELREVNLSDMFT-----GRLKDEIPEALKM------ 83 (382)
T ss_pred hhhHHHHhcccCc-eEEEeccC---CchhHHHHHHHHHHHhhcccceeeehHhhhc-----CCcHHHHHHHHHH------
Confidence 3444455544444 66666654 33455678898887663 344443322100 0012233322100
Q ss_pred EEecccccccCCCCcccCcccceEEeceee--cCCc-----ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEee
Q 012533 159 LKLETDFVFKSPSSGICFPRVKKFHVEIYK--PNMP-----DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMI 231 (461)
Q Consensus 159 L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~--~~~~-----lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~ 231 (461)
| ... ..++|+|++|+|++.. .+.. +++.|..|++|.|.+|.. .....-++ ..-|..|..
T Consensus 84 l----~~a------L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l-~~al~~l~~-- 149 (382)
T KOG1909|consen 84 L----SKA------LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRL-GRALFELAV-- 149 (382)
T ss_pred H----HHH------HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHH-HHHHHHHHH--
Confidence 0 011 1566778888887766 3222 889999999999999965 11000000 000000000
Q ss_pred cccccccCceeEEEecCCceEEEEecceece-------eeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCce
Q 012533 232 GGPIVFANEHQATIEAPKLEHLHVNDGTLVS-------YLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLK 304 (461)
Q Consensus 232 ~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-------~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 304 (461)
..-.-+.|.|+.|......... -.+...|.|+++.+..+... +........-+..+++++
T Consensus 150 ---------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~----~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 150 ---------NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR----PEGVTALAEALEHCPHLE 216 (382)
T ss_pred ---------HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc----CchhHHHHHHHHhCCcce
Confidence 0011234555555554332221 12233466666666554211 111224566777899999
Q ss_pred EEEEecchhhccccchhhhhccccc-cCCCCCCeeEEEEEEeccCc---ch-hhHHhhcCCCCceeEEEee
Q 012533 305 SLYLSCGTIYALGEAYRHLYDAHQY-FLPTFSNLSFLEVRIREYGW---WI-LPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 305 ~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~-l~~lL~~~P~Le~L~l~~~ 370 (461)
.|.|..+++.. -....-. .+|.|++|+.|.+..|-... .. +..+-+..|+|+.|.+.+.
T Consensus 217 vLdl~DNtft~-------egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 217 VLDLRDNTFTL-------EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred eeecccchhhh-------HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 99999988762 2111111 77889999999999884322 22 3445557899999998885
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.83 E-value=0.00074 Score=58.45 Aligned_cols=66 Identities=24% Similarity=0.184 Sum_probs=31.9
Q ss_pred HhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEecc--CcchhhHHhhcCCCCceeEEEee
Q 012533 296 LLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREY--GWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 296 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
+...+++++.|.++...+. -+.... .+..+++|+.|++..+.. ....=..++..+|+|+.|+=...
T Consensus 83 l~~~lp~L~~L~L~~N~I~-------~l~~l~--~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKIS-------DLNELE--PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS----------SCCCCG--GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCcCC-------ChHHhH--HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 3356788889998887766 222211 455678888888875532 22334466778999999876554
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00051 Score=66.05 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=58.7
Q ss_pred HHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeee
Q 012533 292 HALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 292 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
.+.+++..+|+|+.|.|+...+.. ..+.. ..-.++.||.|.|..|+.+|..+..++..||+|+.|++....
T Consensus 163 ~v~~i~eqLp~Le~LNls~Nrl~~------~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 163 PVLKIAEQLPSLENLNLSSNRLSN------FISSN---TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred HHHHHHHhcccchhcccccccccC------Ccccc---chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 678899999999999999887661 11110 223678999999999999999999999999999999998863
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0001 Score=70.71 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=40.8
Q ss_pred cccCcccEEEeccc--ccc-cCCCCcccCcccceEEeceee-c--CCc-ccCCCCccceEEEEeecCCCC--CceeEeec
Q 012533 151 YNSETLEILKLETD--FVF-KSPSSGICFPRVKKFHVEIYK-P--NMP-DFSICPVLEDLSIDYSLNFDW--DADISISS 221 (461)
Q Consensus 151 ~~~~~L~~L~L~~~--~~~-~~p~~~~~~~~L~~L~L~~~~-~--~~~-lls~cp~Le~L~L~~c~~~~~--~~~l~i~~ 221 (461)
-.|++++.|+|+.. ..+ .+...+..+|+|+.|+|+.-. . .+. ..-..+.|+.|.|..|.. .+ +..+....
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl-s~k~V~~~~~~f 221 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL-SWKDVQWILLTF 221 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC-CHHHHHHHHHhC
Confidence 34777777777610 000 000122467777777776655 2 111 333556666777777754 22 12223345
Q ss_pred ccccEEEEeec
Q 012533 222 QTLKRLNLMIG 232 (461)
Q Consensus 222 ~~L~~L~l~~~ 232 (461)
|+|+.|.+...
T Consensus 222 Psl~~L~L~~N 232 (505)
T KOG3207|consen 222 PSLEVLYLEAN 232 (505)
T ss_pred CcHHHhhhhcc
Confidence 66666666543
No 21
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.57 E-value=0.00013 Score=74.60 Aligned_cols=180 Identities=20% Similarity=0.143 Sum_probs=86.8
Q ss_pred cCcccceEEeceee-cCC--c--ccCCCCccceEEEEee-cCCCC----CceeEeecccccEEEEeecccccccCceeEE
Q 012533 175 CFPRVKKFHVEIYK-PNM--P--DFSICPVLEDLSIDYS-LNFDW----DADISISSQTLKRLNLMIGGPIVFANEHQAT 244 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~~~--~--lls~cp~Le~L~L~~c-~~~~~----~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~ 244 (461)
.++.|+.|.+.++. ..+ . +...||.|++|.+.+| ..... ...+...+++|+.|.+..+..+++.+...+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35666666666665 332 2 6666666666666653 11100 0111222456666666655433333333333
Q ss_pred EecCCceEEEEeccee-ce----eeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecch----hhc
Q 012533 245 IEAPKLEHLHVNDGTL-VS----YLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGT----IYA 315 (461)
Q Consensus 245 i~ap~L~~L~l~~~~~-~~----~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~----~~~ 315 (461)
-.+|+|++|.+.++.. .+ .....+++|+++.+..+.... ...+..+...+++++.|.+.... +..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~------d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT------DSGLEALLKNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch------HHHHHHHHHhCcchhhhhhhhcCCCccHHH
Confidence 3466677666544331 11 112345666666666553321 11345556667777766644332 110
Q ss_pred cccchhhhhccc----cc-cCCCCCCeeEEEEEEeccCcchhhHHhhcCCCC
Q 012533 316 LGEAYRHLYDAH----QY-FLPTFSNLSFLEVRIREYGWWILPIIFNCSPNL 362 (461)
Q Consensus 316 ~~~~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~L 362 (461)
. ......... .. ....+++|+++.+..++....++..+++.||+|
T Consensus 340 ~--~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 340 L--SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred H--HHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 0 000000000 00 233566777777776664444556777778877
No 22
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.57 E-value=8.3e-05 Score=75.95 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=31.9
Q ss_pred ccccCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhcc
Q 012533 15 KDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWAS 54 (461)
Q Consensus 15 ~D~is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~~ 54 (461)
.+.....|+.....+....+..+...+..++++|......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 3556778888999999998888888888888888765544
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.23 E-value=0.0026 Score=58.47 Aligned_cols=201 Identities=18% Similarity=0.118 Sum_probs=96.4
Q ss_pred ccCCCcccccCcccEEEecc---ccc------ccCCCCcccCcccceEEeceee-cCCc-ccCCCCccceEEEEeecCCC
Q 012533 144 VELPDCIYNSETLEILKLET---DFV------FKSPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSLNFD 212 (461)
Q Consensus 144 ~~lp~~l~~~~~L~~L~L~~---~~~------~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~~~~ 212 (461)
+.+...+--|..|.+|..++ .++ -.+|-...-|.+|+++.++.|. ..-. +...-|.|+++++.+... .
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~-~ 250 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTI-Q 250 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccc-c
Confidence 33333333367788888771 111 1122233467788888887777 3322 666678888888877533 0
Q ss_pred CCce---------------------e--Eeec-ccccEEEEeecccccccCceeEEEecCCceEEEEecceecee-eeeC
Q 012533 213 WDAD---------------------I--SISS-QTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY-LVYE 267 (461)
Q Consensus 213 ~~~~---------------------l--~i~~-~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~l~~ 267 (461)
.... + .+.. +-|+.|.+++.....++ .-+--+|.++.|.++......+ .+..
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~nLa~ 327 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQNLAE 327 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehhhhh
Confidence 0000 0 0111 22444444433211000 0011246666666654332111 2344
Q ss_pred CCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEecc
Q 012533 268 LHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREY 347 (461)
Q Consensus 268 ~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 347 (461)
+++|+.++++.+.- ..+..+-..+-|+++|.|..+.++ .++ .+.++.+|..|++..+..
T Consensus 328 L~~L~~LDLS~N~L---------s~~~Gwh~KLGNIKtL~La~N~iE-------~LS-----GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLL---------AECVGWHLKLGNIKTLKLAQNKIE-------TLS-----GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred cccceEeecccchh---------HhhhhhHhhhcCEeeeehhhhhHh-------hhh-----hhHhhhhheeccccccch
Confidence 55555555554411 122334445556666666666555 222 333455566666655432
Q ss_pred -CcchhhHHhhcCCCCceeEEEee
Q 012533 348 -GWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 348 -~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
..+.+ .-+.+.|+||.|.+...
T Consensus 387 e~ldeV-~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 387 EELDEV-NHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhHHHh-cccccccHHHHHhhcCC
Confidence 22222 23456788888777663
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.18 E-value=0.0068 Score=64.71 Aligned_cols=185 Identities=15% Similarity=0.207 Sum_probs=93.0
Q ss_pred cccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEee-
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISIS- 220 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~- 220 (461)
...+|..+ .++|+.|.|+...-..+|.. .+++|++|+|.+.. .. +-....+.|+.|.|.+|.. ..+...
T Consensus 190 LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N~Lts-LP~~l~~~L~~L~Ls~N~L----~~LP~~l 260 (754)
T PRK15370 190 LTTIPACI--PEQITTLILDNNELKSLPEN--LQGNIKTLYANSNQLTS-IPATLPDTIQEMELSINRI----TELPERL 260 (754)
T ss_pred cCcCCccc--ccCCcEEEecCCCCCcCChh--hccCCCEEECCCCcccc-CChhhhccccEEECcCCcc----CcCChhH
Confidence 34566544 24688888883221123432 24689999988776 42 2011124788888888764 222111
Q ss_pred cccccEEEEeecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHh-hc
Q 012533 221 SQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLL-KK 299 (461)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l-~~ 299 (461)
..+|+.|.+.++... .... .-.++|+.|.++++....++..-.++|+.+.+..+.- ..+. ..
T Consensus 261 ~s~L~~L~Ls~N~L~---~LP~--~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L------------t~LP~~l 323 (754)
T PRK15370 261 PSALQSLDLFHNKIS---CLPE--NLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL------------TALPETL 323 (754)
T ss_pred hCCCCEEECcCCccC---cccc--ccCCCCcEEECCCCccccCcccchhhHHHHHhcCCcc------------ccCCccc
Confidence 246888888755331 1100 0125788888887654332211112343333332210 0000 01
Q ss_pred CCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 300 LTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 300 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
.++++.|.++.+.+. .+.. .+| .+|+.|++..+... .+..-+ .++|++|+|...
T Consensus 324 ~~sL~~L~Ls~N~Lt-------~LP~----~l~--~sL~~L~Ls~N~L~--~LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 324 PPGLKTLEAGENALT-------SLPA----SLP--PELQVLDVSKNQIT--VLPETL--PPTITTLDVSRN 377 (754)
T ss_pred cccceeccccCCccc-------cCCh----hhc--CcccEEECCCCCCC--cCChhh--cCCcCEEECCCC
Confidence 246777777766554 2211 122 57788877765321 121111 267888887663
No 25
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0016 Score=59.78 Aligned_cols=219 Identities=16% Similarity=0.193 Sum_probs=111.8
Q ss_pred ccCcccceEEeceee-cCC--c--ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecC
Q 012533 174 ICFPRVKKFHVEIYK-PNM--P--DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAP 248 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~--~--lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap 248 (461)
..+..++.|+|.+.. ++. + ++.+.|+|+.|+|..-..-..+..+.....+|++|.+.+.+. +........-+-|
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L-~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL-SWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC-Chhhhhhhhhcch
Confidence 356667777777766 543 2 777778888888776543112223333445677777754422 1122223334556
Q ss_pred CceEEEEecceeceeeeeC------CCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhh
Q 012533 249 KLEHLHVNDGTLVSYLVYE------LHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRH 322 (461)
Q Consensus 249 ~L~~L~l~~~~~~~~~l~~------~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 322 (461)
.+..|+++......+.+.+ -+.+..+...-+.... -.+..++.+.+||+..+.++.+.++ .
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~------w~~~~~l~r~Fpnv~sv~v~e~PlK-------~ 213 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL------WLNKNKLSRIFPNVNSVFVCEGPLK-------T 213 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH------HHHHHhHHhhcccchheeeecCccc-------c
Confidence 6666665543221111100 0111111111111100 1156778888999999999988777 3
Q ss_pred hhccccc-cCCCCCCeeEEEEEEecc-CcchhhHHhhcCCCCceeEEEeeecCCCcccccCccCCcccccccccceEEEE
Q 012533 323 LYDAHQY-FLPTFSNLSFLEVRIREY-GWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIE 400 (461)
Q Consensus 323 ~~~~~~~-~~~~~~~L~~L~l~~~~~-~~~~l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~ 400 (461)
.+..... .+|.|+ .|.|..... +|..+- -|..+|.|..|.+..+.- .+..+. .+...+ +-.+|-+|+
T Consensus 214 ~s~ek~se~~p~~~---~LnL~~~~idswasvD-~Ln~f~~l~dlRv~~~Pl---~d~l~~-~err~l---lIaRL~~v~ 282 (418)
T KOG2982|consen 214 ESSEKGSEPFPSLS---CLNLGANNIDSWASVD-ALNGFPQLVDLRVSENPL---SDPLRG-GERRFL---LIARLTKVQ 282 (418)
T ss_pred hhhcccCCCCCcch---hhhhcccccccHHHHH-HHcCCchhheeeccCCcc---cccccC-CcceEE---EEeeccceE
Confidence 3322222 445444 455655433 455443 456789999998877532 011111 111111 123344555
Q ss_pred EEeC--------CCCchHHHHHHHh
Q 012533 401 ILYG--------DDDPLEPVKYLLK 417 (461)
Q Consensus 401 i~~g--------~~~e~~l~~~ll~ 417 (461)
+-.| ...|..|++|.+.
T Consensus 283 vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 283 VLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred EecCcccchhhhhhhHHHHHHHHhh
Confidence 5422 2568889998776
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.11 E-value=0.019 Score=61.32 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=60.2
Q ss_pred cccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEeec
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISISS 221 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~~ 221 (461)
...+|..+. .+|+.|.+....-..+| ...++|++|+|.+.. .. + =...+.|++|.|.++.. ..+.-..
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP---~lp~~Lk~LdLs~N~Lts-L-P~lp~sL~~L~Ls~N~L----~~Lp~lp 281 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTS-L-PVLPPGLLELSIFSNPL----THLPALP 281 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCcCCCCC---CCCCCCcEEEecCCccCc-c-cCcccccceeeccCCch----hhhhhch
Confidence 446777654 47888988832111233 235889999998876 42 2 11236888888887653 2222223
Q ss_pred ccccEEEEeecccccccCceeEEEecCCceEEEEecceec
Q 012533 222 QTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLV 261 (461)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~ 261 (461)
.+|+.|.+.++.. ..+-...|+|+.|++++....
T Consensus 282 ~~L~~L~Ls~N~L------t~LP~~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 282 SGLCKLWIFGNQL------TSLPVLPPGLQELSVSDNQLA 315 (788)
T ss_pred hhcCEEECcCCcc------ccccccccccceeECCCCccc
Confidence 5677777766543 112123477888888776443
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.00035 Score=63.97 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=79.5
Q ss_pred cceEEEEeccCCCCcchHHHHHHHHHhCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEec-cccc---ccCC
Q 012533 95 ISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLE-TDFV---FKSP 170 (461)
Q Consensus 95 i~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~-~~~~---~~~p 170 (461)
++.+++..-.- .+++.. ..|...+++++.+..+.+ +....+-..+-+|..|..|+|+ ++.. .+..
T Consensus 212 Lk~lSlEg~~L---dD~I~~--~iAkN~~L~~lnlsm~sG------~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 212 LKNLSLEGLRL---DDPIVN--TIAKNSNLVRLNLSMCSG------FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred hhhcccccccc---CcHHHH--HHhccccceeeccccccc------cchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 66666654331 122222 233456888888887642 2223333334558888888888 2111 1000
Q ss_pred CCcccCcccceEEeceee--c--CCc--ccCCCCccceEEEEeecCCCCCcee--EeecccccEEEEeecccccccCcee
Q 012533 171 SSGICFPRVKKFHVEIYK--P--NMP--DFSICPVLEDLSIDYSLNFDWDADI--SISSQTLKRLNLMIGGPIVFANEHQ 242 (461)
Q Consensus 171 ~~~~~~~~L~~L~L~~~~--~--~~~--lls~cp~Le~L~L~~c~~~~~~~~l--~i~~~~L~~L~l~~~~~~~~~~~~~ 242 (461)
..---+.|++|+|+++. - .++ +...||.|.+|+|+.|..+.+ ..+ -...+.|++|.+..|+.+. ....
T Consensus 281 -V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~--p~~~ 356 (419)
T KOG2120|consen 281 -VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDII--PETL 356 (419)
T ss_pred -HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCC--hHHe
Confidence 01124778888888887 2 233 888899999998888866322 111 1124566666666665421 1111
Q ss_pred EEE-ecCCceEEEEecc
Q 012533 243 ATI-EAPKLEHLHVNDG 258 (461)
Q Consensus 243 ~~i-~ap~L~~L~l~~~ 258 (461)
+.+ ..|.|.+|++.|.
T Consensus 357 ~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccCcceEEEEeccc
Confidence 221 3455555555554
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.60 E-value=0.0077 Score=64.31 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=20.4
Q ss_pred CeeEEEEEEecc-Cc-chhhHHhhcCCCCceeEEEee
Q 012533 336 NLSFLEVRIREY-GW-WILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 336 ~L~~L~l~~~~~-~~-~~l~~lL~~~P~Le~L~l~~~ 370 (461)
+|+.|++..+.. .. ..+..++..+|++..|.|...
T Consensus 389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 455566555432 11 235566666788888877664
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.40 E-value=0.016 Score=40.58 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=21.3
Q ss_pred ccCcccceEEeceee-cC-Cc-ccCCCCccceEEEEee
Q 012533 174 ICFPRVKKFHVEIYK-PN-MP-DFSICPVLEDLSIDYS 208 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~-~~-lls~cp~Le~L~L~~c 208 (461)
.++++|++|++.+.. .. +. .+..+|.|+.|.+.++
T Consensus 22 ~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 22 SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 456666666666555 32 11 6667777777776655
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.21 E-value=0.0056 Score=64.70 Aligned_cols=153 Identities=23% Similarity=0.247 Sum_probs=85.3
Q ss_pred CCceEEEEecceec--ee---eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhh
Q 012533 248 PKLEHLHVNDGTLV--SY---LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRH 322 (461)
Q Consensus 248 p~L~~L~l~~~~~~--~~---~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 322 (461)
-+|++|++.|.... ++ .-.-+|+|+.+.+....-. .+.+.++..++|||..|.+++..+. -
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-------~~dF~~lc~sFpNL~sLDIS~TnI~-------n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-------NDDFSQLCASFPNLRSLDISGTNIS-------N 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-------chhHHHHhhccCccceeecCCCCcc-------C
Confidence 45666666653211 11 1123566666666654221 1157888889999999999887766 2
Q ss_pred hhccccccCCCCCCeeEEEEEEecc-CcchhhHHhhcCCCCceeEEEeeecCCCc-ccccCccCCcccccc--cccceEE
Q 012533 323 LYDAHQYFLPTFSNLSFLEVRIREY-GWWILPIIFNCSPNLESFVLIMDVNGPEY-YVEAGWIEPQFVPYC--LQFNVKK 398 (461)
Q Consensus 323 ~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~l~~lL~~~P~Le~L~l~~~~~~~~~-~~~~~w~~~~~~~~c--~~~~Lk~ 398 (461)
++ .+..++||+.|.+..-.. ++..+..++ +..+|+.|+|......... ... . -.+| ...+||.
T Consensus 188 l~-----GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~----q---Ylec~~~LpeLrf 254 (699)
T KOG3665|consen 188 LS-----GISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIE----Q---YLECGMVLPELRF 254 (699)
T ss_pred cH-----HHhccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHH----H---HHHhcccCccccE
Confidence 22 333456666666654332 334444444 4688888888876442111 000 0 0122 1346776
Q ss_pred EEEEeCCCCchHHHHHHHhcCcCCceEEEE
Q 012533 399 IEILYGDDDPLEPVKYLLKNCGVLDKMIFR 428 (461)
Q Consensus 399 v~i~~g~~~e~~l~~~ll~~a~~Le~~~i~ 428 (461)
+.. .|..-.-+++.-+++.=|.|+++.+.
T Consensus 255 LDc-SgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 255 LDC-SGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred Eec-CCcchhHHHHHHHHHhCccHhhhhhh
Confidence 655 45555566777777777777776644
No 31
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.11 E-value=0.00061 Score=68.41 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=10.3
Q ss_pred hhcCCCceEEEEecchhh
Q 012533 297 LKKLTNLKSLYLSCGTIY 314 (461)
Q Consensus 297 l~~l~~l~~L~l~~~~~~ 314 (461)
++++.++++|.|+.+.+.
T Consensus 169 ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred HHHHhhhhhhhcCCChhh
Confidence 344556666666665544
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.09 E-value=0.0011 Score=69.56 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=41.3
Q ss_pred chHHHHHHHHHhCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee
Q 012533 110 SRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK 188 (461)
Q Consensus 110 ~~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~ 188 (461)
..+..|+..+ .+++.+..... ....+|..++...+|++|.....---.+|+...++.+|++|.|....
T Consensus 254 ~~lp~wi~~~--~nle~l~~n~N---------~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 254 SNLPEWIGAC--ANLEALNANHN---------RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred hcchHHHHhc--ccceEecccch---------hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 3445777653 35666655442 23566766677777777766511111245555778889999888776
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.07 E-value=0.0041 Score=65.74 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=57.4
Q ss_pred EecCCceEEEEecceeceee-eeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhh
Q 012533 245 IEAPKLEHLHVNDGTLVSYL-VYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHL 323 (461)
Q Consensus 245 i~ap~L~~L~l~~~~~~~~~-l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~ 323 (461)
-+-|||.+|+++|....... +.++.+|+.+.+..-....+ ..+..+ -.+.+|+.|.++...... ....+
T Consensus 170 ~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~------~~l~~L-F~L~~L~vLDIS~~~~~~---~~~ii 239 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESY------QDLIDL-FNLKKLRVLDISRDKNND---DTKII 239 (699)
T ss_pred hccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCch------hhHHHH-hcccCCCeeecccccccc---chHHH
Confidence 35567777777665433221 12344444443322111111 123333 357788888887643221 00022
Q ss_pred hccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEE
Q 012533 324 YDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLI 368 (461)
Q Consensus 324 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~ 368 (461)
..|..+. -.+++|+.|+.+...-+.+.+..+++.-|+|+.+.+-
T Consensus 240 ~qYlec~-~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 240 EQYLECG-MVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHhc-ccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 2222220 1256788887775555666777888888888777644
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.013 Score=54.08 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=56.6
Q ss_pred HHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCC-CCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 292 HALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLP-TFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 292 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
.+..++..+|.++.|.|+++.+.+ .|. .+| ...||+.|.|...+..|..+.+++...|.++.|++...
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s------~I~-----~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSS------DIK-----SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCC------ccc-----cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 467789999999999999987762 121 555 66899999999888899999999999999999988775
No 35
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=94.72 E-value=0.023 Score=32.06 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.0
Q ss_pred ccceEEeceee-cCC-c---ccCCCC
Q 012533 178 RVKKFHVEIYK-PNM-P---DFSICP 198 (461)
Q Consensus 178 ~L~~L~L~~~~-~~~-~---lls~cp 198 (461)
+||+|+|..+. .++ . ++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 58999999999 665 2 999998
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.02 E-value=0.056 Score=57.84 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=29.0
Q ss_pred CccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceec
Q 012533 198 PVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLV 261 (461)
Q Consensus 198 p~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~ 261 (461)
|.|+.|++.++.. ..+.....+|+.|.+.++... .... -.++|++|++++....
T Consensus 302 ~~L~~LdLS~N~L----~~Lp~lp~~L~~L~Ls~N~L~---~LP~---lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 302 PGLQELSVSDNQL----ASLPALPSELCKLWAYNNQLT---SLPT---LPSGLQELSVSDNQLA 355 (788)
T ss_pred cccceeECCCCcc----ccCCCCcccccccccccCccc---cccc---cccccceEecCCCccC
Confidence 6788888887643 222112345777776655331 1110 1136777777765443
No 37
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.98 E-value=0.0027 Score=57.77 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=56.9
Q ss_pred CceEEEEecceeceeee-eCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccc
Q 012533 249 KLEHLHVNDGTLVSYLV-YELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAH 327 (461)
Q Consensus 249 ~L~~L~l~~~~~~~~~l-~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~ 327 (461)
+.+.|+++|+...++++ ..||.|+.+.++++.- .-..-+..|++|+.|.|..+.+. .+.+..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkI----------ssL~pl~rCtrLkElYLRkN~I~-------sldEL~ 82 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKI----------SSLAPLQRCTRLKELYLRKNCIE-------SLDELE 82 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeecccc----------ccchhHHHHHHHHHHHHHhcccc-------cHHHHH
Confidence 34455555555444444 3566666666666532 12335566777777777766665 333221
Q ss_pred cccCCCCCCeeEEEEEEecc----CcchhhHHhhcCCCCceeEEE
Q 012533 328 QYFLPTFSNLSFLEVRIREY----GWWILPIIFNCSPNLESFVLI 368 (461)
Q Consensus 328 ~~~~~~~~~L~~L~l~~~~~----~~~~l~~lL~~~P~Le~L~l~ 368 (461)
.+..+++|+.|-|..+.+ .-..=...|+..|||++|+=.
T Consensus 83 --YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 83 --YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred --HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 444566677776665422 222344677888888888643
No 38
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.70 E-value=0.00069 Score=68.03 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=38.9
Q ss_pred cccCCCcccccCcccEEEeccc----ccccCCCCcccCcccceEEeceee-cC-Cc--ccCCCCccceEEEEeecCCCCC
Q 012533 143 PVELPDCIYNSETLEILKLETD----FVFKSPSSGICFPRVKKFHVEIYK-PN-MP--DFSICPVLEDLSIDYSLNFDWD 214 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~----~~~~~p~~~~~~~~L~~L~L~~~~-~~-~~--lls~cp~Le~L~L~~c~~~~~~ 214 (461)
...||+.+-+..+|++|.|++. +.++ ...++.+|.+|++++.. +- .+ -+....+|.+++++.-.. ..+
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr---QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~v 237 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLR---QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIV 237 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHh---cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-Ccc
Confidence 4456666666666667766621 1121 01233444555555544 22 12 444555666666655322 111
Q ss_pred ceeEeecccccEEEEeec
Q 012533 215 ADISISSQTLKRLNLMIG 232 (461)
Q Consensus 215 ~~l~i~~~~L~~L~l~~~ 232 (461)
...-...++|++|.+++.
T Consensus 238 Pecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hHHHhhhhhhheeccCcC
Confidence 111112355666666543
No 39
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.46 E-value=0.05 Score=50.44 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=31.6
Q ss_pred ccccCCCChHHHHHHHcC-----CChHhHhhhcccchhhHHH
Q 012533 15 KDRISCMPDSILCHILSF-----LSTEDAVRTSILSSRWKLV 51 (461)
Q Consensus 15 ~D~is~LPd~vL~~Ils~-----L~~rd~~rts~lSrrWr~l 51 (461)
-+.|+.||||||..||.. |+.++..++|+|||.|+..
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 355789999999999864 4679999999999999864
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=93.10 E-value=0.067 Score=46.34 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=44.2
Q ss_pred cCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhh-HHhhcCCCCceeEEEeeecCCCcc
Q 012533 299 KLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILP-IIFNCSPNLESFVLIMDVNGPEYY 377 (461)
Q Consensus 299 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~-~lL~~~P~Le~L~l~~~~~~~~~~ 377 (461)
.+.+++.|.++.+.+. .+. .++.+.+|+.|.+....- ..+. .+.+++|+|++|.+....-
T Consensus 40 ~l~~L~~L~Ls~N~I~-------~l~-----~l~~L~~L~~L~L~~N~I--~~i~~~l~~~lp~L~~L~L~~N~I----- 100 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQIT-------KLE-----GLPGLPRLKTLDLSNNRI--SSISEGLDKNLPNLQELYLSNNKI----- 100 (175)
T ss_dssp T-TT--EEE-TTS--S---------T-----T----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS-------
T ss_pred hhcCCCEEECCCCCCc-------ccc-----CccChhhhhhcccCCCCC--CccccchHHhCCcCCEEECcCCcC-----
Confidence 4678888888888776 222 566778888887775432 2222 3445789999998865311
Q ss_pred cccCccCCcccccccccceEEEEEE-eCCCCchHHHHHHHhcCcCCceEEEEe
Q 012533 378 VEAGWIEPQFVPYCLQFNVKKIEIL-YGDDDPLEPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 378 ~~~~w~~~~~~~~c~~~~Lk~v~i~-~g~~~e~~l~~~ll~~a~~Le~~~i~~ 429 (461)
..|.+...... ..+|+.+.+. ..-...-..=.+++...|.|+.+--..
T Consensus 101 --~~l~~l~~L~~--l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 101 --SDLNELEPLSS--LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ---SCCCCGGGGG---TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred --CChHHhHHHHc--CCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 12222111111 3568888776 333344556667888888888765444
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.67 E-value=0.18 Score=35.06 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=38.2
Q ss_pred CceEEEEEccCCCCCCCCCccccCCCcccc-cCcccEEEecc-cccccCCCCcccCcccceEEecee
Q 012533 123 NVHEIEVNLPVDDPFEEGYEPVELPDCIYN-SETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIY 187 (461)
Q Consensus 123 ~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~-~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~ 187 (461)
++++|.+... ....+|...|. +++|++|+++. ....-.|....++++|+.|++++.
T Consensus 2 ~L~~L~l~~n---------~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN---------KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS---------TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC---------CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5677777653 24567766655 99999999992 222212234579999999999874
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.26 E-value=0.065 Score=50.09 Aligned_cols=37 Identities=32% Similarity=0.594 Sum_probs=34.7
Q ss_pred ccccCCCC----hHHHHHHHcCCChHhHhhhcccchhhHHH
Q 012533 15 KDRISCMP----DSILCHILSFLSTEDAVRTSILSSRWKLV 51 (461)
Q Consensus 15 ~D~is~LP----d~vL~~Ils~L~~rd~~rts~lSrrWr~l 51 (461)
.|-|..|| |+|...||++|+..++..+-.+||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 48899999 99999999999999999999999999864
No 43
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.90 E-value=0.11 Score=50.36 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.1
Q ss_pred cCCCChHHHHHHHcCCC-hHhHhhhcccchhhHHHhcc
Q 012533 18 ISCMPDSILCHILSFLS-TEDAVRTSILSSRWKLVWAS 54 (461)
Q Consensus 18 is~LPd~vL~~Ils~L~-~rd~~rts~lSrrWr~lw~~ 54 (461)
-++||+|+|..|..+|+ .-|.+|-+.|||.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 57899999999999996 77999999999999986543
No 44
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.11 E-value=0.079 Score=48.06 Aligned_cols=66 Identities=20% Similarity=0.043 Sum_probs=41.1
Q ss_pred ccCCCCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceec
Q 012533 193 DFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLV 261 (461)
Q Consensus 193 lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~ 261 (461)
+....-.|+.|++.+|.. ...... ..|.|++|.++........+...+...||+|+++++++....
T Consensus 38 l~d~~~~le~ls~~n~gl---tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGL---TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccccchhhhhhhccce---eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 455555666666666654 222222 256778888776533333455666778899999999987653
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.57 E-value=0.59 Score=44.36 Aligned_cols=39 Identities=8% Similarity=0.069 Sum_probs=30.4
Q ss_pred cccceEEEEEE---eCCCCchHHHHHHHhcCcCCceEEEEee
Q 012533 392 LQFNVKKIEIL---YGDDDPLEPVKYLLKNCGVLDKMIFRYV 430 (461)
Q Consensus 392 ~~~~Lk~v~i~---~g~~~e~~l~~~ll~~a~~Le~~~i~~~ 430 (461)
...||+.+.+. -....-..|++.+-+.+|.|+.+.+-++
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 35578888877 3446668999999999999999988773
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=89.84 E-value=0.59 Score=43.43 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=44.9
Q ss_pred cCcccceEEeceee-c-CC--c-------ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeec
Q 012533 175 CFPRVKKFHVEIYK-P-NM--P-------DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIG 232 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~-~~--~-------lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~ 232 (461)
.+.+|+.|....+. . +. + -++.+.+|..+.++.|.. .++..+...-|+|.++.+.+.
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeecCchhheeeeecc
Confidence 46789999998887 3 21 1 567889999999999987 666677777899999998865
No 47
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=89.18 E-value=0.013 Score=49.63 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=41.5
Q ss_pred cccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc-ccCCCCccceEEEEe
Q 012533 149 CIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDY 207 (461)
Q Consensus 149 ~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~ 207 (461)
.+|..++.+.|.|+...-...||..+.+.+|+.|++.+-. .+-- -+|..|.|+.|++.-
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM 88 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch
Confidence 4677888888888833333356666788888888888777 3332 777788888877754
No 48
>PLN03150 hypothetical protein; Provisional
Probab=88.77 E-value=0.44 Score=50.42 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=52.4
Q ss_pred cccEEEec-ccccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCC-CceeEeecccccEEEE
Q 012533 155 TLEILKLE-TDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDW-DADISISSQTLKRLNL 229 (461)
Q Consensus 155 ~L~~L~L~-~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~-~~~l~i~~~~L~~L~l 229 (461)
.++.|.|. ....-.+|+....+++|+.|+|++.. .+.+ .+..++.|+.|+|.++.. .+ +...--..++|+.|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-NGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC-CCCCchHHhcCCCCCEEEC
Confidence 36777777 22222345555778999999999888 7665 788899999999988765 11 1111112578888888
Q ss_pred eecc
Q 012533 230 MIGG 233 (461)
Q Consensus 230 ~~~~ 233 (461)
.++.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 7654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=87.95 E-value=0.37 Score=31.11 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=18.9
Q ss_pred cccceEEeceeecCCc--ccCCCCccceEEEEeec
Q 012533 177 PRVKKFHVEIYKPNMP--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 177 ~~L~~L~L~~~~~~~~--lls~cp~Le~L~L~~c~ 209 (461)
++|++|+|.+..-.++ .++.||.|+.|.+.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 3566666666651133 36677777777777664
No 50
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=86.12 E-value=0.086 Score=55.95 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=38.9
Q ss_pred ccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc-ccCCCCccceEEEEee
Q 012533 144 VELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYS 208 (461)
Q Consensus 144 ~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c 208 (461)
..+|..+....+|++|.|.+-.-..+|.+...+.+|..|+++.-. ..-- .+..|..++++...+-
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 445555555666777777644444456566667777777777666 3222 6666666666666553
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.71 E-value=1.1 Score=41.30 Aligned_cols=172 Identities=17% Similarity=0.024 Sum_probs=95.5
Q ss_pred ccCcccceEEeceee-cCC----c--ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEe
Q 012533 174 ICFPRVKKFHVEIYK-PNM----P--DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIE 246 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~----~--lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ 246 (461)
..||+|++.+|+... ... + +++....|++|.+.+|.. .....-+|. .-|..|-. .+ =.-+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rig-kal~~la~----------nK-Kaa~ 155 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIG-KALFHLAY----------NK-KAAD 155 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHH-HHHHHHHH----------Hh-hhcc
Confidence 456777777776555 221 2 889999999999999864 111111110 00100000 01 1236
Q ss_pred cCCceEEEEecceeceee-------eeCCCCceEEEEEeeeecccCCccchhHHH--HHhhcCCCceEEEEecchhhccc
Q 012533 247 APKLEHLHVNDGTLVSYL-------VYELHSLCDARLDIDYSRVRSDPVRADHAL--QLLKKLTNLKSLYLSCGTIYALG 317 (461)
Q Consensus 247 ap~L~~L~l~~~~~~~~~-------l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~--~~l~~l~~l~~L~l~~~~~~~~~ 317 (461)
+|.|+.+..-.......+ +.....|.++.+..+-- .+. +.... -=+..+.+++.|.|..+++..
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgI----rpe-gv~~L~~~gl~y~~~LevLDlqDNtft~-- 228 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGI----RPE-GVTMLAFLGLFYSHSLEVLDLQDNTFTL-- 228 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCc----Ccc-hhHHHHHHHHHHhCcceeeeccccchhh--
Confidence 778887776544332211 22234566666655421 111 11112 223457899999999887662
Q ss_pred cchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcC-----CCCceeEEEe
Q 012533 318 EAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCS-----PNLESFVLIM 369 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~-----P~Le~L~l~~ 369 (461)
..+.+....++.+++|+.|.+.-|-....+..++++.+ |+|..|-.+.
T Consensus 229 ----~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 229 ----EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred ----hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 12222111678889999999998876667777777654 6666665544
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=84.20 E-value=0.45 Score=52.12 Aligned_cols=67 Identities=18% Similarity=0.074 Sum_probs=45.7
Q ss_pred cccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeec
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~ 209 (461)
...||..+...-+|++|+|+...--.+|.+...+..|.+|++.... -.-. +....++|+.|.+....
T Consensus 584 l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 584 LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 5678888777888888888733222456666677777777777666 3322 56667888888887754
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=82.34 E-value=2.8 Score=36.89 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=36.2
Q ss_pred cCcccEEEecc--cccccCCCCcccCcccceEEeceee---cCCc-ccCCCCccceEEEEeec
Q 012533 153 SETLEILKLET--DFVFKSPSSGICFPRVKKFHVEIYK---PNMP-DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 153 ~~~L~~L~L~~--~~~~~~p~~~~~~~~L~~L~L~~~~---~~~~-lls~cp~Le~L~L~~c~ 209 (461)
.+.|.+|.|+. .... -|.....+|+|++|.|.+-+ -+|+ =+..||.|+.|++.+-.
T Consensus 63 l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 56677777761 1111 12233567888888888766 4566 77788888888887744
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=82.33 E-value=0.94 Score=29.17 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=17.5
Q ss_pred cccEEEecccccccCCCCcccCcccceEEeceee
Q 012533 155 TLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK 188 (461)
Q Consensus 155 ~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~ 188 (461)
+|++|.+....-..+|+....+++|+.|+|++..
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4666666621111123323667777777777665
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=82.23 E-value=0.15 Score=55.64 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred cccCcccEEEeccccc-c-cCCC-CcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEeec---
Q 012533 151 YNSETLEILKLETDFV-F-KSPS-SGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISISS--- 221 (461)
Q Consensus 151 ~~~~~L~~L~L~~~~~-~-~~p~-~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i~~--- 221 (461)
..|+.|++|-+..... . .++. ....+|.|+.|+|+++. .+.+ .++..-+|+.|++.++.. ..+...-
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I----~~LP~~l~~L 617 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI----SHLPSGLGNL 617 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc----cccchHHHHH
Confidence 3466788888773211 1 1111 13678999999999877 5655 888899999999998754 3333332
Q ss_pred ccccEEEEeecccccccCceeEEEecCCceEEEEeccee--ceee---eeCCCCceEEEEEee
Q 012533 222 QTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTL--VSYL---VYELHSLCDARLDID 279 (461)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~--~~~~---l~~~~~L~~~~i~~~ 279 (461)
..|.+|++...... .....+.-..++|++|.+..... .... +.++.+|+..++...
T Consensus 618 k~L~~Lnl~~~~~l--~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRL--ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred Hhhheecccccccc--ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 35666666543321 11112223367888888875431 1122 234555555555443
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=81.17 E-value=0.75 Score=47.40 Aligned_cols=40 Identities=28% Similarity=0.576 Sum_probs=36.7
Q ss_pred CCCccccCCCChHHHHHHHcCCChHhHhhhcccchhhHHH
Q 012533 12 INKKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLV 51 (461)
Q Consensus 12 ~~~~D~is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~l 51 (461)
....|.++.||-++..+||++|+.|+...++.+|+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3456999999999999999999999999999999999864
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=80.90 E-value=0.5 Score=46.90 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=92.2
Q ss_pred cCcccEEEecccccccCCCCcccCc-ccceEEeceee-cCCc-ccCCCCccceEEEEeecCCCCCceeEeecccccEEEE
Q 012533 153 SETLEILKLETDFVFKSPSSGICFP-RVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNL 229 (461)
Q Consensus 153 ~~~L~~L~L~~~~~~~~p~~~~~~~-~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l 229 (461)
...++.|.+.......+++....+. +|+.|++.+-. ..-. -+..+|.|+.|.+.++.. .++.......+.|+.|.+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheec
Confidence 3567777777444444455545553 88888888777 4322 578888899998888865 222222225677777777
Q ss_pred eecccccccCceeEE--EecCC-ceEEEEeccee-c-eeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCce
Q 012533 230 MIGGPIVFANEHQAT--IEAPK-LEHLHVNDGTL-V-SYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLK 304 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~--i~ap~-L~~L~l~~~~~-~-~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 304 (461)
.+... ..+. +..++ |++|.+.+... . ...+.+...+....+...... .+...+..+++++
T Consensus 194 s~N~i------~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~---------~~~~~~~~l~~l~ 258 (394)
T COG4886 194 SGNKI------SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE---------DLPESIGNLSNLE 258 (394)
T ss_pred cCCcc------ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee---------eccchhccccccc
Confidence 76542 1111 12344 77777766521 1 112233333333332211110 1134667777888
Q ss_pred EEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEe
Q 012533 305 SLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR 345 (461)
Q Consensus 305 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 345 (461)
.|.++...+. .+. .+..+.++++|++...
T Consensus 259 ~L~~s~n~i~-------~i~-----~~~~~~~l~~L~~s~n 287 (394)
T COG4886 259 TLDLSNNQIS-------SIS-----SLGSLTNLRELDLSGN 287 (394)
T ss_pred eecccccccc-------ccc-----cccccCccCEEeccCc
Confidence 8888877655 111 3445677777777653
No 58
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=79.66 E-value=0.11 Score=44.24 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNM 191 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~ 191 (461)
.+++.|.+.+. ....+|.++.+.++|+.|.++..--..+|...++||.|+.|+|..-. .+.
T Consensus 56 ~nlevln~~nn---------qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 56 KNLEVLNLSNN---------QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred hhhhhhhcccc---------hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence 35555655542 35678888888888888888722122246666888888888888776 443
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.47 E-value=0.63 Score=42.37 Aligned_cols=70 Identities=24% Similarity=0.047 Sum_probs=48.4
Q ss_pred HHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEecc--CcchhhHHhhcCCCCceeEEEeee
Q 012533 294 LQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREY--GWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 294 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
..+...+|++++|.++.+.+. .++... .++.+.||+.|++..|.. -...=..+++..|.|..|+-.-..
T Consensus 84 ~vl~e~~P~l~~l~ls~Nki~-------~lstl~--pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 84 EVLAEKAPNLKVLNLSGNKIK-------DLSTLR--PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred eehhhhCCceeEEeecCCccc-------cccccc--hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 336667799999999998877 444322 677889999999998853 222234566677888888665544
Q ss_pred c
Q 012533 372 N 372 (461)
Q Consensus 372 ~ 372 (461)
.
T Consensus 155 ~ 155 (260)
T KOG2739|consen 155 G 155 (260)
T ss_pred C
Confidence 3
No 60
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.35 E-value=0.71 Score=25.81 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=12.0
Q ss_pred CCccceEEEEeecC
Q 012533 197 CPVLEDLSIDYSLN 210 (461)
Q Consensus 197 cp~Le~L~L~~c~~ 210 (461)
||.|+.|+|.+|..
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 78888888888876
No 61
>PLN03150 hypothetical protein; Provisional
Probab=78.31 E-value=1.9 Score=45.71 Aligned_cols=81 Identities=14% Similarity=-0.002 Sum_probs=50.3
Q ss_pred ccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEE
Q 012533 178 RVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLH 254 (461)
Q Consensus 178 ~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~ 254 (461)
.++.|+|.+.. .+.. -+..++.|+.|.|.++..-..+...--..++|+.|.+.++...+. .....-..++|+.|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~--iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC--CchHHhcCCCCCEEE
Confidence 47788888777 6555 677889999999988754111111112257888888887644210 111123568899998
Q ss_pred Eeccee
Q 012533 255 VNDGTL 260 (461)
Q Consensus 255 l~~~~~ 260 (461)
+.+...
T Consensus 497 Ls~N~l 502 (623)
T PLN03150 497 LNGNSL 502 (623)
T ss_pred CcCCcc
Confidence 887643
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=78.18 E-value=6.4 Score=39.00 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=32.8
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCcc
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVL 200 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~L 200 (461)
++.+.|.+..+ ....+|. + -++|++|.++....+...|.. -.++|++|.+.+|. ... --+.|
T Consensus 52 ~~l~~L~Is~c---------~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~s----LP~sL 114 (426)
T PRK15386 52 RASGRLYIKDC---------DIESLPV-L--PNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISG----LPESV 114 (426)
T ss_pred cCCCEEEeCCC---------CCcccCC-C--CCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccc----ccccc
Confidence 56777777654 1233441 1 234777777633322111111 12467777777664 221 11346
Q ss_pred ceEEEE
Q 012533 201 EDLSID 206 (461)
Q Consensus 201 e~L~L~ 206 (461)
+.|.|.
T Consensus 115 e~L~L~ 120 (426)
T PRK15386 115 RSLEIK 120 (426)
T ss_pred ceEEeC
Confidence 666654
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.66 E-value=0.26 Score=43.07 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=25.7
Q ss_pred ccCcccceEEeceee-cCCc----ccCCCCccceEEEEeecC
Q 012533 174 ICFPRVKKFHVEIYK-PNMP----DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~----lls~cp~Le~L~L~~c~~ 210 (461)
..+++++.|.+.+|. -+|- +-.-.|+|++|.|++|..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe
Confidence 456777777777777 4442 555677888888887766
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=76.75 E-value=4 Score=40.39 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=18.8
Q ss_pred CCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEe
Q 012533 335 SNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 335 ~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
.+|++|.+..|.... +.. .--++|+.|++..
T Consensus 156 sSLk~L~Is~c~~i~--LP~--~LP~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNII--LPE--KLPESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCccc--Ccc--cccccCcEEEecc
Confidence 589999998765321 010 0115888888865
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.52 E-value=0.063 Score=49.18 Aligned_cols=77 Identities=23% Similarity=0.263 Sum_probs=39.1
Q ss_pred cccEEEEeecccccccCceeEEEecCCceEEEEecceece-eeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCC
Q 012533 223 TLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVS-YLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLT 301 (461)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~ 301 (461)
+.++|+.++|+. ...++....|.||-|.++-....+ .++..|.+|.++.+.-+.-..+ +-...+.++|
T Consensus 20 ~vkKLNcwg~~L----~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sl-------dEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGCGL----DDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESL-------DELEYLKNLP 88 (388)
T ss_pred HhhhhcccCCCc----cHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccH-------HHHHHHhcCc
Confidence 344555555543 112233356666666666443322 2344566666555433311111 2355777888
Q ss_pred CceEEEEec
Q 012533 302 NLKSLYLSC 310 (461)
Q Consensus 302 ~l~~L~l~~ 310 (461)
+|++|.|..
T Consensus 89 sLr~LWL~E 97 (388)
T KOG2123|consen 89 SLRTLWLDE 97 (388)
T ss_pred hhhhHhhcc
Confidence 888888754
No 66
>PF13013 F-box-like_2: F-box-like domain
Probab=75.09 E-value=2 Score=33.89 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=26.2
Q ss_pred ccCCCChHHHHHHHcCCChHhHhhhcccch
Q 012533 17 RISCMPDSILCHILSFLSTEDAVRTSILSS 46 (461)
Q Consensus 17 ~is~LPd~vL~~Ils~L~~rd~~rts~lSr 46 (461)
.+.+||+||+..|+.+-+..+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 588999999999999999888877777666
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=70.80 E-value=8.4 Score=34.02 Aligned_cols=16 Identities=31% Similarity=0.438 Sum_probs=10.7
Q ss_pred EecCCceEEEEeccee
Q 012533 245 IEAPKLEHLHVNDGTL 260 (461)
Q Consensus 245 i~ap~L~~L~l~~~~~ 260 (461)
..||.|++|.+.|...
T Consensus 110 a~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccCCccceeeecCCch
Confidence 3577777777776543
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.19 E-value=0.44 Score=41.69 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=38.5
Q ss_pred ccCCCCccceEEEEeecCCCCC--ceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEec
Q 012533 193 DFSICPVLEDLSIDYSLNFDWD--ADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVND 257 (461)
Q Consensus 193 lls~cp~Le~L~L~~c~~~~~~--~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~ 257 (461)
-+.+++.++.|.+.+|..+++. ..+.-..++|+.|.|+.|..+++.+...+ ...++|+.|.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYD 185 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcC
Confidence 5667899999999999886442 22222367777777777655443332211 2345555555554
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=62.14 E-value=23 Score=32.90 Aligned_cols=123 Identities=15% Similarity=0.031 Sum_probs=72.3
Q ss_pred HHHHHhhcCCCceEEEEecchhhccccchhhhhcccc-c--cCCCCCCeeEEEEEEeccCc-------chhhHHh-----
Q 012533 292 HALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQ-Y--FLPTFSNLSFLEVRIREYGW-------WILPIIF----- 356 (461)
Q Consensus 292 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~L~~L~l~~~~~~~-------~~l~~lL----- 356 (461)
.+.+.+-+||++++..|+.+.+.. .+.. . .+..-.+|+||-++.++... .++.++.
T Consensus 83 ~Ll~aLlkcp~l~~v~LSDNAfg~---------~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKa 153 (388)
T COG5238 83 MLLKALLKCPRLQKVDLSDNAFGS---------EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKA 153 (388)
T ss_pred HHHHHHhcCCcceeeeccccccCc---------ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhh
Confidence 466777889999999998776541 1111 1 34455789999999885421 1222222
Q ss_pred hcCCCCceeEEEeeecCCCcccccCccCCcccccccccceEEEEEE-eCCCCc--hHHHHHHHhcCcCCceEEEEe
Q 012533 357 NCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEIL-YGDDDP--LEPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 357 ~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~-~g~~~e--~~l~~~ll~~a~~Le~~~i~~ 429 (461)
..-|.||++...-.... ..+...|.. ..+ ....|+.|.|. .|-..+ -.++-+=+..+..||-+-+.-
T Consensus 154 a~kp~Le~vicgrNRle--ngs~~~~a~---~l~-sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 154 ADKPKLEVVICGRNRLE--NGSKELSAA---LLE-SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred ccCCCceEEEeccchhc--cCcHHHHHH---HHH-hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 35688888776553221 011122321 011 12469999999 565555 555656667788888776664
No 70
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=59.70 E-value=10 Score=25.23 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=27.4
Q ss_pred CCeeEEEEEEe-cc--CcchhhHHhhcCCCCceeEEE
Q 012533 335 SNLSFLEVRIR-EY--GWWILPIIFNCSPNLESFVLI 368 (461)
Q Consensus 335 ~~L~~L~l~~~-~~--~~~~l~~lL~~~P~Le~L~l~ 368 (461)
.+|+.+.+... +. ....+..++++++.|+++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 68999988744 32 556688999999999999985
No 71
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=54.91 E-value=2.5 Score=41.10 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 333 TFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
.+.+|+.|++.. ++...++.++.+|.+|+.|+|++.
T Consensus 503 nm~nL~tLDL~n--Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 503 NMRNLTTLDLQN--NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhhcceeccCC--CchhhCChhhccccceeEEEecCC
Confidence 456777777663 467778889999999999999885
No 72
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=52.29 E-value=7.7 Score=37.83 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=29.0
Q ss_pred cccCCCcccc-cCcccEEEec-ccccccCCCCcccCcccceEEecee
Q 012533 143 PVELPDCIYN-SETLEILKLE-TDFVFKSPSSGICFPRVKKFHVEIY 187 (461)
Q Consensus 143 ~~~lp~~l~~-~~~L~~L~L~-~~~~~~~p~~~~~~~~L~~L~L~~~ 187 (461)
...+|...|. ..+|+.|+|+ ....+.-|....++++|.+|.+.+-
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 5567776666 6778888887 3333434445567777777777663
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=48.15 E-value=6.9 Score=38.75 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=88.9
Q ss_pred cccCCCcccccC-cccEEEecccccccCCCCcccCcccceEEeceee-cCCc-ccCCCCccceEEEEeecCCCCCceeEe
Q 012533 143 PVELPDCIYNSE-TLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSLNFDWDADISI 219 (461)
Q Consensus 143 ~~~lp~~l~~~~-~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~~~~~~~~l~i 219 (461)
...+|....... +|+.|++..-.--.+|.....+++|+.|.+.+.. .+-. .....+.|+.|.+.+... ..+..
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i----~~l~~ 203 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI----SDLPP 203 (394)
T ss_pred cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcc----ccCch
Confidence 456666555553 8999999832222222334789999999999888 4433 555889999999998654 33333
Q ss_pred e--c-ccccEEEEeecccccccCceeEEEecCCceEEEEecceece--eeeeCCCCceEEEEEeeeecccCCccchhHHH
Q 012533 220 S--S-QTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVS--YLVYELHSLCDARLDIDYSRVRSDPVRADHAL 294 (461)
Q Consensus 220 ~--~-~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~--~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~ 294 (461)
. . ..|++|.+.+... .......-...++..+.+.+..... -.+...++++.+.+....-. .+.
T Consensus 204 ~~~~~~~L~~l~~~~N~~---~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~---------~i~ 271 (394)
T COG4886 204 EIELLSALEELDLSNNSI---IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS---------SIS 271 (394)
T ss_pred hhhhhhhhhhhhhcCCcc---eecchhhhhcccccccccCCceeeeccchhccccccceecccccccc---------ccc
Confidence 2 2 3477777765521 0011112234455555544443322 33455666666666554321 112
Q ss_pred HHhhcCCCceEEEEecchh
Q 012533 295 QLLKKLTNLKSLYLSCGTI 313 (461)
Q Consensus 295 ~~l~~l~~l~~L~l~~~~~ 313 (461)
. +..+.+++.|.+++...
T Consensus 272 ~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred c-ccccCccCEEeccCccc
Confidence 2 66777888888887544
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.67 E-value=7.2 Score=21.03 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=6.2
Q ss_pred CCccceEEEEeec
Q 012533 197 CPVLEDLSIDYSL 209 (461)
Q Consensus 197 cp~Le~L~L~~c~ 209 (461)
||.|++|+|.+|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 4666666666654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=46.76 E-value=8.4 Score=19.03 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=4.7
Q ss_pred ccceEEEEeec
Q 012533 199 VLEDLSIDYSL 209 (461)
Q Consensus 199 ~Le~L~L~~c~ 209 (461)
+|+.|+|.+|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555553
No 76
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=42.60 E-value=8 Score=36.56 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=34.7
Q ss_pred cCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhccCC
Q 012533 18 ISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLP 56 (461)
Q Consensus 18 is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~~~p 56 (461)
+..+|+++++.|++++..++++++|.+|+|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 567899999999999999999999999999987665555
No 77
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=41.81 E-value=34 Score=24.39 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=28.6
Q ss_pred CCeeEEEEEEec-c--CcchhhHHhhcCCCCceeEEEeee
Q 012533 335 SNLSFLEVRIRE-Y--GWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 335 ~~L~~L~l~~~~-~--~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
.+|+.+.+.... . ....+..||+++|.||++.|....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 458888887553 2 455688999999999999998863
No 78
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=41.27 E-value=21 Score=27.35 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.3
Q ss_pred cccCCCChHHHHHHHcCCChHhHhh
Q 012533 16 DRISCMPDSILCHILSFLSTEDAVR 40 (461)
Q Consensus 16 D~is~LPd~vL~~Ils~L~~rd~~r 40 (461)
...+.||.|+-..||++|+-+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5789999999999999999988753
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=36.72 E-value=57 Score=25.88 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=23.3
Q ss_pred cCcccEEEecc-cccccCCCCcccCcccceEEeceee--cCCcccCCCCccceEEEEe
Q 012533 153 SETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK--PNMPDFSICPVLEDLSIDY 207 (461)
Q Consensus 153 ~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~--~~~~lls~cp~Le~L~L~~ 207 (461)
|.+|+.+.+.. .... ......++++|+.+++..-. .++..+..|+.|+.+.+..
T Consensus 11 ~~~l~~i~~~~~~~~I-~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 11 CSNLESITFPNTIKKI-GENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -TT--EEEETST--EE--TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCEEEECCCeeEe-Chhhcccccccccccccccccccceeeeecccccccccccc
Confidence 66777777651 1111 01122456667777766422 2333677777777777743
No 80
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=35.15 E-value=3.5 Score=40.16 Aligned_cols=110 Identities=18% Similarity=0.109 Sum_probs=59.3
Q ss_pred cccCCCcccccCcccEEEec-ccccccCCCCcccCcccceEEeceee-c-CCc-ccCCCCccceEEEEeecCCCCCceeE
Q 012533 143 PVELPDCIYNSETLEILKLE-TDFVFKSPSSGICFPRVKKFHVEIYK-P-NMP-DFSICPVLEDLSIDYSLNFDWDADIS 218 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~-~~~~~~~p~~~~~~~~L~~L~L~~~~-~-~~~-lls~cp~Le~L~L~~c~~~~~~~~l~ 218 (461)
...+|+.+.+..+|..|.|. ....+ .|...+|..|++||+..-. . -.+ +.+..++|..|+++.-.. ..+..-.
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~ 271 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEI 271 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHH
Confidence 45677777777777777766 21111 1244677778888776555 2 233 677777888887777543 1111111
Q ss_pred eecccccEEEEeecccccccCceeEEEecCCceEEEEecce
Q 012533 219 ISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGT 259 (461)
Q Consensus 219 i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 259 (461)
+-..+|++|.+++... .+ -......-.|+.|.+.|.+
T Consensus 272 clLrsL~rLDlSNN~i---s~-Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDI---SS-LPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred HHhhhhhhhcccCCcc---cc-CCcccccceeeehhhcCCc
Confidence 1135677777776543 11 1122222256666666643
No 81
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=28.56 E-value=8.9 Score=37.40 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=30.0
Q ss_pred ccEEEec-ccccccCCC-CcccCcccceEEeceee-cC--CcccCCCCccceEEEEe
Q 012533 156 LEILKLE-TDFVFKSPS-SGICFPRVKKFHVEIYK-PN--MPDFSICPVLEDLSIDY 207 (461)
Q Consensus 156 L~~L~L~-~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~--~~lls~cp~Le~L~L~~ 207 (461)
-+.++|. ..... +|+ ....+++||+|+|++-. .. .--+.+.+.|-+|.+-+
T Consensus 69 tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 69 TVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred ceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 3555555 22222 233 45689999999999877 32 11556666666665555
No 82
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=28.30 E-value=1.9 Score=45.26 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=0.0
Q ss_pred CccceEEEEeecCCCCCceeEee-cccccEEEEeecccccccCceeEEEecCCceEEEEecceeceeee-eCCCCceEEE
Q 012533 198 PVLEDLSIDYSLNFDWDADISIS-SQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLV-YELHSLCDAR 275 (461)
Q Consensus 198 p~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l-~~~~~L~~~~ 275 (461)
|.||.|+|+.-.. ...-.+. ++.|++|.|..++. .....+...+-+|..|.+++.......- .++.+|..++
T Consensus 187 ~ale~LnLshNk~---~~v~~Lr~l~~LkhLDlsyN~L---~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LD 260 (1096)
T KOG1859|consen 187 PALESLNLSHNKF---TKVDNLRRLPKLKHLDLSYNCL---RHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLD 260 (1096)
T ss_pred HHhhhhccchhhh---hhhHHHHhcccccccccccchh---ccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccc
Q ss_pred EEeeeecccCCccchhHHHHHhhcCCCceEEEEecchh
Q 012533 276 LDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTI 313 (461)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 313 (461)
+.++.-.++ .-..++..+..+..|.|.++.+
T Consensus 261 lsyNll~~h-------seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLSEH-------SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhhcc-------hhhhHHHHHHHHHHHhhcCCcc
No 83
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=24.16 E-value=56 Score=30.13 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=36.2
Q ss_pred ccccCCCChHHHHHHHcCCC-hHhHhhhcccchhh------HHHhccCCeeEeecc
Q 012533 15 KDRISCMPDSILCHILSFLS-TEDAVRTSILSSRW------KLVWASLPNLMFNDK 63 (461)
Q Consensus 15 ~D~is~LPd~vL~~Ils~L~-~rd~~rts~lSrrW------r~lw~~~p~l~~~~~ 63 (461)
+--+.+||.+++..|+.+|+ -+|+..++.+-..- |.+|..+-...|...
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~er 254 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNER 254 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44689999999999999996 89999888763222 456666555666653
No 84
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.86 E-value=22 Score=26.33 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=25.2
Q ss_pred CChHHHHHHHcCCChHhHhhhcccch--hhHHHhccC
Q 012533 21 MPDSILCHILSFLSTEDAVRTSILSS--RWKLVWASL 55 (461)
Q Consensus 21 LPd~vL~~Ils~L~~rd~~rts~lSr--rWr~lw~~~ 55 (461)
+||+.=.....++-+++.++..-|-+ .|+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 45555566666777888888876654 599999943
Done!