Query 012533
Match_columns 461
No_of_seqs 181 out of 1711
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 2E-20 6.9E-25 194.6 2.8 362 15-430 6-446 (592)
2 2p1m_B Transport inhibitor res 99.7 3.9E-19 1.3E-23 184.9 5.4 170 15-209 3-195 (594)
3 2ast_B S-phase kinase-associat 99.7 1.8E-18 6.2E-23 166.8 2.3 188 15-258 6-205 (336)
4 4fcg_A Uncharacterized protein 99.0 1.3E-09 4.4E-14 104.3 9.0 82 118-210 77-162 (328)
5 3ogk_B Coronatine-insensitive 98.8 1.2E-09 4.1E-14 113.2 3.7 214 150-370 266-498 (592)
6 2p1m_B Transport inhibitor res 98.7 5.9E-10 2E-14 115.5 -2.0 226 174-423 286-534 (594)
7 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 1E-08 3.4E-13 69.3 3.9 39 15-53 6-44 (53)
8 2z80_A TOLL-like receptor 2, v 98.7 9E-08 3.1E-12 92.3 11.4 222 122-370 52-287 (353)
9 4fmz_A Internalin; leucine ric 98.6 3.2E-08 1.1E-12 95.2 6.5 226 95-370 68-297 (347)
10 3zyi_A Leucine-rich repeat-con 98.6 2.2E-08 7.6E-13 100.1 5.2 199 149-371 94-301 (452)
11 2id5_A Lingo-1, leucine rich r 98.6 2.4E-08 8.4E-13 100.5 4.6 64 297-371 268-331 (477)
12 4fmz_A Internalin; leucine ric 98.6 5.3E-08 1.8E-12 93.6 6.7 254 121-430 65-321 (347)
13 4fcg_A Uncharacterized protein 98.6 6.3E-08 2.1E-12 92.5 7.1 196 153-370 80-287 (328)
14 1o6v_A Internalin A; bacterial 98.5 1.6E-07 5.6E-12 94.2 9.5 206 174-429 131-340 (466)
15 1o6v_A Internalin A; bacterial 98.5 2.4E-07 8.2E-12 93.0 10.7 249 122-430 68-319 (466)
16 3zyj_A Leucine-rich repeat-con 98.5 2.1E-08 7.2E-13 100.0 2.7 199 150-372 84-291 (440)
17 3o6n_A APL1; leucine-rich repe 98.5 2.1E-07 7.3E-12 91.0 9.9 143 247-429 204-348 (390)
18 3t6q_A CD180 antigen; protein- 98.5 1E-08 3.4E-13 106.6 -0.3 204 145-370 292-510 (606)
19 1ogq_A PGIP-2, polygalacturona 98.5 9E-08 3.1E-12 90.8 5.1 203 145-370 67-278 (313)
20 1ozn_A Reticulon 4 receptor; N 98.5 3.4E-08 1.1E-12 92.3 1.6 197 154-371 32-236 (285)
21 3oja_B Anopheles plasmodium-re 98.5 2.9E-07 1E-11 95.4 8.7 36 333-370 299-334 (597)
22 2z63_A TOLL-like receptor 4, v 98.5 5.2E-07 1.8E-11 92.8 10.5 34 175-208 323-357 (570)
23 3o6n_A APL1; leucine-rich repe 98.4 1.3E-07 4.3E-12 92.7 5.4 231 150-429 89-327 (390)
24 2id5_A Lingo-1, leucine rich r 98.4 3.1E-07 1.1E-11 92.4 8.3 199 150-370 76-282 (477)
25 3v47_A TOLL-like receptor 5B a 98.4 4E-07 1.4E-11 90.9 9.0 64 296-370 294-357 (455)
26 3rgz_A Protein brassinosteroid 98.4 6.8E-08 2.3E-12 103.2 2.8 156 144-312 90-258 (768)
27 1xku_A Decorin; proteoglycan, 98.4 1.1E-07 3.9E-12 90.7 3.4 61 297-369 212-272 (330)
28 3j0a_A TOLL-like receptor 5; m 98.4 2.2E-06 7.6E-11 92.5 13.4 61 297-370 476-536 (844)
29 2z81_A CD282 antigen, TOLL-lik 98.4 2.4E-06 8.1E-11 87.4 12.6 223 122-370 26-261 (549)
30 3t6q_A CD180 antigen; protein- 98.3 9.4E-08 3.2E-12 99.2 1.9 209 145-370 268-486 (606)
31 1h6u_A Internalin H; cell adhe 98.3 3.6E-07 1.2E-11 86.4 5.5 138 122-277 41-181 (308)
32 2ast_B S-phase kinase-associat 98.3 2.6E-08 8.9E-13 95.3 -2.6 228 113-369 37-281 (336)
33 2z66_A Variable lymphocyte rec 98.3 1.7E-07 6E-12 88.3 2.8 206 143-370 19-233 (306)
34 3oja_B Anopheles plasmodium-re 98.3 3E-07 1E-11 95.3 4.4 208 122-370 75-288 (597)
35 2z63_A TOLL-like receptor 4, v 98.3 4.5E-07 1.6E-11 93.2 5.6 202 146-369 274-479 (570)
36 1h6u_A Internalin H; cell adhe 98.3 1.3E-06 4.5E-11 82.5 8.3 185 153-370 40-227 (308)
37 2ca6_A RAN GTPase-activating p 98.3 1.8E-08 6E-13 98.7 -5.4 35 175-209 92-133 (386)
38 1ogq_A PGIP-2, polygalacturona 98.3 5.2E-08 1.8E-12 92.4 -2.1 238 95-370 52-301 (313)
39 2z80_A TOLL-like receptor 2, v 98.3 3.1E-06 1.1E-10 81.4 10.4 88 143-233 43-135 (353)
40 2z66_A Variable lymphocyte rec 98.3 3.3E-08 1.1E-12 93.4 -3.5 205 145-371 42-259 (306)
41 4ecn_A Leucine-rich repeat pro 98.3 2.9E-07 1E-11 98.7 3.4 130 146-278 440-604 (876)
42 3oja_A Leucine-rich immune mol 98.3 5.8E-07 2E-11 90.7 5.3 53 174-232 77-130 (487)
43 3rgz_A Protein brassinosteroid 98.3 2.6E-07 8.9E-12 98.7 2.7 145 122-279 100-257 (768)
44 3v47_A TOLL-like receptor 5B a 98.3 2.6E-07 8.8E-12 92.3 2.5 142 248-418 275-423 (455)
45 2o6q_A Variable lymphocyte rec 98.3 1E-06 3.5E-11 81.5 6.3 57 154-210 37-97 (270)
46 3zyi_A Leucine-rich repeat-con 98.3 1.9E-06 6.5E-11 86.0 8.8 202 122-357 99-316 (452)
47 3o53_A Protein LRIM1, AGAP0063 98.2 5.8E-07 2E-11 85.3 4.1 166 174-370 55-224 (317)
48 3vq2_A TLR4, TOLL-like recepto 98.2 6.3E-07 2.2E-11 92.9 4.6 124 150-278 281-408 (606)
49 4eco_A Uncharacterized protein 98.2 4.8E-07 1.6E-11 94.5 3.6 225 122-370 206-467 (636)
50 1ozn_A Reticulon 4 receptor; N 98.2 6.8E-07 2.3E-11 83.3 4.0 194 122-345 32-235 (285)
51 4ecn_A Leucine-rich repeat pro 98.2 6.9E-07 2.4E-11 95.9 4.6 221 122-369 548-785 (876)
52 3zyj_A Leucine-rich repeat-con 98.2 8.8E-07 3E-11 88.1 4.9 203 122-358 88-306 (440)
53 1z7x_W Ribonuclease inhibitor; 98.2 3.8E-08 1.3E-12 98.5 -5.2 235 121-370 27-294 (461)
54 3vq2_A TLR4, TOLL-like recepto 98.2 4.4E-07 1.5E-11 94.2 2.5 211 122-369 285-506 (606)
55 3bz5_A Internalin-J, INLJ; leu 98.2 1.7E-06 5.7E-11 86.5 6.4 158 174-368 103-262 (457)
56 2z62_A TOLL-like receptor 4, v 98.2 1.7E-06 5.8E-11 80.2 5.9 179 174-375 49-239 (276)
57 1p9a_G Platelet glycoprotein I 98.2 7.1E-07 2.4E-11 83.5 3.0 17 298-314 145-161 (290)
58 3j0a_A TOLL-like receptor 5; m 98.1 5.6E-06 1.9E-10 89.4 10.3 80 152-232 288-372 (844)
59 1ziw_A TOLL-like receptor 3; i 98.1 5.4E-07 1.9E-11 94.8 2.1 79 122-209 329-416 (680)
60 3oja_A Leucine-rich immune mol 98.1 6.5E-07 2.2E-11 90.3 2.0 34 175-208 56-90 (487)
61 2ca6_A RAN GTPase-activating p 98.1 4.4E-08 1.5E-12 95.8 -6.6 216 143-370 21-284 (386)
62 4eco_A Uncharacterized protein 98.1 9E-07 3.1E-11 92.4 2.9 221 122-369 305-545 (636)
63 2z7x_B TOLL-like receptor 1, v 98.1 1.1E-05 3.9E-10 81.8 11.0 36 394-429 348-383 (520)
64 2ft3_A Biglycan; proteoglycan, 98.1 3.7E-07 1.3E-11 87.2 -0.0 62 297-370 213-274 (332)
65 1xku_A Decorin; proteoglycan, 98.1 3.7E-06 1.3E-10 80.1 7.0 214 122-370 76-303 (330)
66 2xwt_C Thyrotropin receptor; s 98.1 4.9E-06 1.7E-10 75.3 7.2 55 155-209 32-91 (239)
67 3g06_A SSPH2 (leucine-rich rep 98.1 5.4E-06 1.8E-10 85.8 8.1 14 175-188 99-112 (622)
68 2z81_A CD282 antigen, TOLL-lik 98.1 2.4E-06 8.1E-11 87.4 5.3 206 143-370 17-233 (549)
69 3bz5_A Internalin-J, INLJ; leu 98.1 2.4E-06 8.4E-11 85.3 5.2 200 122-371 42-244 (457)
70 2ft3_A Biglycan; proteoglycan, 98.1 1.4E-06 4.9E-11 83.1 3.1 213 122-370 78-304 (332)
71 2ra8_A Uncharacterized protein 98.0 1.1E-06 3.8E-11 84.7 2.0 79 174-256 136-227 (362)
72 1ziw_A TOLL-like receptor 3; i 98.0 1.6E-06 5.6E-11 91.1 3.3 69 297-376 556-625 (680)
73 3rfs_A Internalin B, repeat mo 98.0 1.3E-06 4.5E-11 80.8 1.9 78 122-210 41-121 (272)
74 3g06_A SSPH2 (leucine-rich rep 98.0 9.4E-06 3.2E-10 84.0 8.1 199 122-371 81-295 (622)
75 2z7x_B TOLL-like receptor 1, v 98.0 4.3E-05 1.5E-09 77.5 12.0 63 298-370 321-384 (520)
76 1z7x_W Ribonuclease inhibitor; 97.9 1.6E-07 5.6E-12 93.8 -6.1 234 123-370 86-351 (461)
77 4glp_A Monocyte differentiatio 97.9 4.2E-06 1.4E-10 79.0 3.9 105 95-209 66-180 (310)
78 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 0.00019 6.5E-09 73.5 16.4 77 122-209 76-157 (562)
79 4ezg_A Putative uncharacterize 97.9 5.9E-06 2E-10 72.4 4.4 78 122-210 44-124 (197)
80 1wwl_A Monocyte differentiatio 97.9 7.1E-07 2.4E-11 84.5 -2.6 173 175-369 93-283 (312)
81 1h6t_A Internalin B; cell adhe 97.9 1.1E-05 3.9E-10 75.3 5.5 100 152-259 44-145 (291)
82 2e31_A FBS1, F-box only protei 97.9 8.2E-06 2.8E-10 75.3 4.2 37 16-52 49-86 (297)
83 2o6q_A Variable lymphocyte rec 97.9 1.2E-05 4.2E-10 74.2 5.4 173 122-345 37-215 (270)
84 3o53_A Protein LRIM1, AGAP0063 97.9 8.8E-06 3E-10 77.1 4.4 166 174-370 31-201 (317)
85 2xwt_C Thyrotropin receptor; s 97.9 3E-05 1E-09 70.0 7.9 100 122-232 31-140 (239)
86 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 1.7E-05 5.8E-10 81.4 6.8 76 122-209 100-180 (562)
87 2z62_A TOLL-like receptor 4, v 97.8 1.6E-05 5.4E-10 73.6 5.4 125 177-314 28-162 (276)
88 3l2o_B F-box only protein 4; s 97.8 5.3E-06 1.8E-10 75.6 1.8 34 17-50 4-37 (312)
89 3rfs_A Internalin B, repeat mo 97.8 1.1E-05 3.7E-10 74.6 3.8 167 174-369 60-231 (272)
90 1h6t_A Internalin B; cell adhe 97.8 2.5E-05 8.5E-10 73.0 6.2 164 122-345 46-210 (291)
91 1m9s_A Internalin B; cell inva 97.8 9E-06 3.1E-10 84.0 2.9 164 152-345 41-207 (605)
92 1m9s_A Internalin B; cell inva 97.7 1.8E-05 6.3E-10 81.6 4.5 148 150-314 61-210 (605)
93 3e4g_A ATP synthase subunit S, 97.7 4.6E-06 1.6E-10 71.0 -0.3 80 178-258 62-149 (176)
94 3goz_A Leucine-rich repeat-con 97.7 2E-06 6.9E-11 83.1 -3.3 73 292-370 186-263 (362)
95 1wwl_A Monocyte differentiatio 97.7 1.1E-05 3.6E-10 76.3 1.6 193 122-369 95-305 (312)
96 4ezg_A Putative uncharacterize 97.7 4.6E-05 1.6E-09 66.6 5.6 123 122-259 66-192 (197)
97 1p9a_G Platelet glycoprotein I 97.6 1.8E-05 6.1E-10 73.9 2.9 194 143-360 22-224 (290)
98 3goz_A Leucine-rich repeat-con 97.6 6.8E-06 2.3E-10 79.4 -0.9 68 293-366 216-287 (362)
99 1jl5_A Outer protein YOPM; leu 97.6 5.7E-05 2E-09 75.3 5.4 122 145-279 145-267 (454)
100 3m19_A Variable lymphocyte rec 97.6 5.7E-05 1.9E-09 68.8 5.0 159 143-345 26-189 (251)
101 1xeu_A Internalin C; cellular 97.6 0.00015 5.2E-09 66.5 7.8 144 151-345 38-182 (263)
102 1xeu_A Internalin C; cellular 97.6 7.6E-05 2.6E-09 68.5 5.7 144 174-371 38-183 (263)
103 4ay9_X Follicle-stimulating ho 97.5 0.00016 5.4E-09 69.4 7.9 215 122-369 30-255 (350)
104 2ell_A Acidic leucine-rich nuc 97.5 3.4E-05 1.2E-09 65.5 2.3 81 122-210 24-107 (168)
105 3cvr_A Invasion plasmid antige 97.5 0.00024 8.3E-09 72.6 8.5 182 121-346 58-241 (571)
106 3v7d_B Cell division control p 97.4 4E-05 1.4E-09 76.1 2.4 41 14-54 11-51 (464)
107 1jl5_A Outer protein YOPM; leu 97.4 9.8E-05 3.3E-09 73.6 5.1 50 301-370 317-367 (454)
108 2ell_A Acidic leucine-rich nuc 97.4 7E-05 2.4E-09 63.5 2.9 133 154-314 24-160 (168)
109 3m19_A Variable lymphocyte rec 97.4 0.00013 4.5E-09 66.3 4.8 127 122-260 35-167 (251)
110 3e4g_A ATP synthase subunit S, 97.4 4.6E-05 1.6E-09 64.9 1.3 91 143-234 50-151 (176)
111 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00019 6.6E-09 70.8 4.3 39 13-51 14-52 (445)
112 3e6j_A Variable lymphocyte rec 97.2 0.00041 1.4E-08 62.1 6.0 110 143-258 31-145 (229)
113 2je0_A Acidic leucine-rich nuc 97.2 4E-05 1.4E-09 63.6 -0.8 65 145-210 33-100 (149)
114 2je0_A Acidic leucine-rich nuc 97.1 8.2E-05 2.8E-09 61.7 0.7 36 174-209 39-75 (149)
115 4g8a_A TOLL-like receptor 4; l 97.1 0.0012 4.2E-08 68.2 9.4 81 151-232 73-158 (635)
116 1p22_A F-BOX/WD-repeat protein 97.1 0.00012 4E-09 72.3 1.5 38 14-51 7-48 (435)
117 3cvr_A Invasion plasmid antige 97.1 0.0017 5.9E-08 66.3 10.0 70 178-260 121-192 (571)
118 2ra8_A Uncharacterized protein 97.1 0.00023 8E-09 68.4 3.1 127 80-208 93-229 (362)
119 4glp_A Monocyte differentiatio 97.1 8.7E-05 3E-09 69.8 -0.0 148 122-278 117-281 (310)
120 4ay9_X Follicle-stimulating ho 96.9 0.0012 4.2E-08 63.1 6.8 87 143-234 21-116 (350)
121 2o6s_A Variable lymphocyte rec 96.9 0.0011 3.8E-08 58.1 5.6 87 143-232 19-110 (208)
122 1a9n_A U2A', U2A'; complex (nu 96.8 0.00023 7.8E-09 60.8 0.8 66 296-370 83-150 (176)
123 4g8a_A TOLL-like receptor 4; l 96.8 0.00026 9E-09 73.2 0.9 57 152-208 369-430 (635)
124 3e6j_A Variable lymphocyte rec 96.8 0.0012 4.1E-08 59.0 5.1 126 122-259 40-170 (229)
125 2v9t_B SLIT homolog 2 protein 96.8 0.001 3.6E-08 59.0 4.4 87 143-232 23-114 (220)
126 2o6s_A Variable lymphocyte rec 96.7 0.0016 5.4E-08 57.1 5.0 101 122-232 28-134 (208)
127 2v9t_B SLIT homolog 2 protein 96.7 0.0015 5.2E-08 57.9 5.0 102 122-233 32-139 (220)
128 2v70_A SLIT-2, SLIT homolog 2 96.6 0.0016 5.3E-08 57.9 4.4 103 174-279 54-163 (220)
129 1ds9_A Outer arm dynein; leuci 96.6 0.00015 5E-09 63.4 -2.4 60 149-209 43-104 (198)
130 1a9n_A U2A', U2A'; complex (nu 96.6 0.00037 1.3E-08 59.5 0.1 59 151-209 16-75 (176)
131 1ds9_A Outer arm dynein; leuci 96.6 7.8E-05 2.7E-09 65.2 -4.3 36 174-210 45-82 (198)
132 3un9_A NLR family member X1; l 96.3 0.00011 3.7E-09 71.2 -5.5 73 292-370 174-249 (372)
133 4fdw_A Leucine rich hypothetic 96.3 0.0017 5.7E-08 63.4 2.9 14 193-206 221-234 (401)
134 2xot_A Amphoterin-induced prot 96.2 0.0024 8.3E-08 61.3 3.6 58 152-209 62-123 (361)
135 2v70_A SLIT-2, SLIT homolog 2 96.2 0.0033 1.1E-07 55.7 4.1 32 178-209 33-68 (220)
136 2wfh_A SLIT homolog 2 protein 96.0 0.0063 2.2E-07 52.6 4.7 66 143-210 22-90 (193)
137 2o6r_A Variable lymphocyte rec 95.9 0.0087 3E-07 50.8 5.5 65 144-210 20-88 (177)
138 1w8a_A SLIT protein; signaling 95.9 0.0058 2E-07 52.8 4.1 66 143-210 20-90 (192)
139 1dce_A Protein (RAB geranylger 95.8 0.0062 2.1E-07 62.2 4.5 77 123-210 442-520 (567)
140 2wfh_A SLIT homolog 2 protein 95.8 0.011 3.7E-07 51.1 5.4 80 122-210 31-114 (193)
141 2o6r_A Variable lymphocyte rec 95.3 0.025 8.7E-07 47.8 6.1 80 122-210 28-112 (177)
142 4fdw_A Leucine rich hypothetic 95.0 0.044 1.5E-06 53.3 7.4 30 178-207 158-189 (401)
143 4b8c_D Glucose-repressible alc 94.8 0.0064 2.2E-07 64.1 1.0 58 151-209 221-281 (727)
144 1w8a_A SLIT protein; signaling 94.8 0.023 7.8E-07 48.9 4.3 79 123-210 30-114 (192)
145 3sb4_A Hypothetical leucine ri 94.7 0.02 7E-07 53.9 4.1 98 247-367 225-328 (329)
146 3g39_A Variable lymphocyte rec 94.7 0.054 1.8E-06 45.5 6.3 65 143-209 21-89 (170)
147 1dce_A Protein (RAB geranylger 94.6 0.019 6.5E-07 58.6 3.6 36 173-209 459-497 (567)
148 2r9u_A Variable lymphocyte rec 94.5 0.063 2.2E-06 45.3 6.3 64 144-209 25-92 (174)
149 4b8c_D Glucose-repressible alc 94.4 0.013 4.5E-07 61.7 2.2 100 122-234 224-328 (727)
150 2xot_A Amphoterin-induced prot 93.5 0.077 2.6E-06 50.6 5.4 80 122-210 64-148 (361)
151 2r9u_A Variable lymphocyte rec 93.4 0.14 4.9E-06 43.1 6.4 80 122-210 33-117 (174)
152 3g39_A Variable lymphocyte rec 93.3 0.16 5.4E-06 42.6 6.4 80 122-210 30-114 (170)
153 2ifg_A High affinity nerve gro 92.2 0.075 2.6E-06 50.2 3.3 88 143-232 21-113 (347)
154 3un9_A NLR family member X1; l 92.1 0.0013 4.4E-08 63.5 -9.4 56 154-209 101-166 (372)
155 1io0_A Tropomodulin; LRR prote 90.1 0.086 3E-06 45.0 1.2 22 293-314 85-106 (185)
156 4fs7_A Uncharacterized protein 88.3 0.24 8.3E-06 47.7 3.1 53 153-205 161-215 (394)
157 3rw6_A Nuclear RNA export fact 87.8 0.16 5.5E-06 46.1 1.4 62 295-366 190-257 (267)
158 3sb4_A Hypothetical leucine ri 86.7 0.61 2.1E-05 43.5 4.7 62 145-206 240-305 (329)
159 2ifg_A High affinity nerve gro 82.4 1.6 5.4E-05 40.9 5.5 80 122-210 31-115 (347)
160 1io0_A Tropomodulin; LRR prote 81.8 0.35 1.2E-05 41.1 0.6 123 292-429 27-160 (185)
161 4gt6_A Cell surface protein; l 70.8 2.4 8.2E-05 40.5 3.2 56 246-312 332-389 (394)
162 4gt6_A Cell surface protein; l 66.3 8.7 0.0003 36.5 6.2 78 151-231 285-366 (394)
163 4fs7_A Uncharacterized protein 58.0 12 0.00042 35.5 5.5 76 151-231 294-375 (394)
164 3rw6_A Nuclear RNA export fact 57.2 4.3 0.00015 36.6 1.9 35 175-209 168-207 (267)
165 4h09_A Hypothetical leucine ri 47.1 21 0.00073 33.4 5.2 55 152-206 261-318 (379)
166 4h09_A Hypothetical leucine ri 34.4 82 0.0028 29.2 7.1 76 150-230 236-318 (379)
167 2lz0_A Uncharacterized protein 22.5 58 0.002 24.0 2.9 15 193-207 38-52 (100)
168 2agh_C Zinc finger protein HRX 21.1 71 0.0024 17.2 2.1 20 406-425 6-25 (31)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2e-20 Score=194.65 Aligned_cols=362 Identities=14% Similarity=0.083 Sum_probs=183.8
Q ss_pred ccccC----CCChHHHHHHHcCC-ChHhHhhhcccchhhHHHhccCCeeEeeccccccCCCCCCCcccchHHHHHHHHHh
Q 012533 15 KDRIS----CMPDSILCHILSFL-STEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLL 89 (461)
Q Consensus 15 ~D~is----~LPd~vL~~Ils~L-~~rd~~rts~lSrrWr~lw~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~ 89 (461)
.|+++ +||||+|.+||+|| +.+|+++++.|||||++++...+...+.. .. +......++.
T Consensus 6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~---------~~------~~~~~~~~~~ 70 (592)
T 3ogk_B 6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA---------LC------YTATPDRLSR 70 (592)
T ss_dssp ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES---------CG------GGSCHHHHHH
T ss_pred hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe---------ec------cccChHHHHH
Confidence 45555 89999999999999 89999999999999999875444222211 00 0112233444
Q ss_pred cCcCCcceEEEEeccC--------CCCcchHHHHHHHHHh--CCceEEEEEccCCCCCCCCCccccCCCcccc-cCc-cc
Q 012533 90 SNSVSISKFSLHCQKK--------PRYLSRLKFWVALAIM--RNVHEIEVNLPVDDPFEEGYEPVELPDCIYN-SET-LE 157 (461)
Q Consensus 90 ~~~~~i~~l~l~~~~~--------~~~~~~~~~wl~~a~~--~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~-~~~-L~ 157 (461)
+... ++.+.+..... .........|+..... +++++|++..+. ..... +..+.. +++ |+
T Consensus 71 ~~~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-------i~~~~-~~~l~~~~~~~L~ 141 (592)
T 3ogk_B 71 RFPN-LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-------VSDLD-LDRLAKARADDLE 141 (592)
T ss_dssp HCTT-CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-------CCHHH-HHHHHHHHGGGCC
T ss_pred hCCC-CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-------ecHHH-HHHHHHhccccCc
Confidence 4444 88888866331 1223445567766553 578888876531 10001 111111 333 77
Q ss_pred EEEecccccc---cCCCCcccCcccceEEeceee-cCC----c--ccCCCCccceEEEEeecCCCC-----CceeEeecc
Q 012533 158 ILKLETDFVF---KSPSSGICFPRVKKFHVEIYK-PNM----P--DFSICPVLEDLSIDYSLNFDW-----DADISISSQ 222 (461)
Q Consensus 158 ~L~L~~~~~~---~~p~~~~~~~~L~~L~L~~~~-~~~----~--lls~cp~Le~L~L~~c~~~~~-----~~~l~i~~~ 222 (461)
+|+|.....+ .++.....+++|++|+|.++. .+. + +...||.|++|++.++.. .. +..+...++
T Consensus 142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIARNCR 220 (592)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCHHHHHHHHHHCT
T ss_pred EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC-CccCHHHHHHHHhhCC
Confidence 7777622111 111112356677777777666 332 2 555666666666655432 10 011111245
Q ss_pred cccEEEEeecccccccCceeEEEecCCceEEEEe---------------------------cceec--eeeeeCCCCceE
Q 012533 223 TLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVN---------------------------DGTLV--SYLVYELHSLCD 273 (461)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~---------------------------~~~~~--~~~l~~~~~L~~ 273 (461)
+|++|.+.++... +........|+|++|.+. +.... ...+..+++|++
T Consensus 221 ~L~~L~L~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 221 SLVSVKVGDFEIL---ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp TCCEEECSSCBGG---GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCcEEeccCccHH---HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 6666666554321 111111233444444443 32111 111233555666
Q ss_pred EEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEE---------
Q 012533 274 ARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRI--------- 344 (461)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------- 344 (461)
+.+..+. . ....+..++..+++++.|.+....... .+.. ....+++|++|++..
T Consensus 298 L~Ls~~~-l------~~~~~~~~~~~~~~L~~L~L~~~~~~~------~l~~----~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 298 LDLLYAL-L------ETEDHCTLIQKCPNLEVLETRNVIGDR------GLEV----LAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp EEETTCC-C------CHHHHHHHHTTCTTCCEEEEEGGGHHH------HHHH----HHHHCTTCCEEEEECCCCSSTTSS
T ss_pred EecCCCc-C------CHHHHHHHHHhCcCCCEEeccCccCHH------HHHH----HHHhCCCCCEEEeecCcccccccc
Confidence 6555432 1 112344567778888888877221110 0000 112356788888873
Q ss_pred -e-ccCcchhhHHhhcCCCCceeEEEeeecCCCcccccCccCCcccccccccceEEEEEE-eCCCCch------HHHHHH
Q 012533 345 -R-EYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEIL-YGDDDPL------EPVKYL 415 (461)
Q Consensus 345 -~-~~~~~~l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~-~g~~~e~------~l~~~l 415 (461)
+ .....++..+.+.||+|++|.+....- .... ...+.. ...+|+.+.+. ....+.+ +-+..+
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l-----~~~~---~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDI-----TNES---LESIGT-YLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCC-----CHHH---HHHHHH-HCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCc-----cHHH---HHHHHh-hCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 3 234455677777788888888833211 0000 000111 13468888875 2111111 235566
Q ss_pred HhcCcCCceEEEEee
Q 012533 416 LKNCGVLDKMIFRYV 430 (461)
Q Consensus 416 l~~a~~Le~~~i~~~ 430 (461)
+.+.+.|+++.+..+
T Consensus 432 ~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHCTTCCEEEEECC
T ss_pred HHhCCCCCEEEEecC
Confidence 788999999999863
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=3.9e-19 Score=184.93 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=94.4
Q ss_pred ccccCCCChHHHHHHHcCCC-hHhHhhhcccchhhHHHhcc-CCeeEeeccccccCCCCCCCcccchHHHHHHHHHhcCc
Q 012533 15 KDRISCMPDSILCHILSFLS-TEDAVRTSILSSRWKLVWAS-LPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNS 92 (461)
Q Consensus 15 ~D~is~LPd~vL~~Ils~L~-~rd~~rts~lSrrWr~lw~~-~p~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~ 92 (461)
.|+++.||||||.+||++|| .+|+++++.|||||+++... ...+.+.. +. ... . ..++.+.+
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~--~~---------~~~-~----~~~~~~~~ 66 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGN--CY---------AVS-P----ATVIRRFP 66 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESS--TT---------SSC-H----HHHHHHCT
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecc--cc---------ccC-H----HHHHhhCC
Confidence 48999999999999999999 99999999999999987322 22333332 10 000 0 12232322
Q ss_pred CCcceEEEEeccCC--------CCcchHHHHHHHHHh--CCceEEEEEccCCCCCCCCCccccCCCccc-ccCcccEEEe
Q 012533 93 VSISKFSLHCQKKP--------RYLSRLKFWVALAIM--RNVHEIEVNLPVDDPFEEGYEPVELPDCIY-NSETLEILKL 161 (461)
Q Consensus 93 ~~i~~l~l~~~~~~--------~~~~~~~~wl~~a~~--~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L 161 (461)
. ++.+.+...... .+...+..|+..... .++++|++..+. .....+ ..+. .+++|++|+|
T Consensus 67 ~-L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-------~~~~~~-~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 67 K-VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-------VTDDCL-ELIAKSFKNFKVLVL 137 (594)
T ss_dssp T-CCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-------CCHHHH-HHHHHHCTTCCEEEE
T ss_pred C-ceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-------EcHHHH-HHHHHhCCCCcEEeC
Confidence 2 888888764321 112455678877654 578888887641 111111 1122 4677777777
Q ss_pred cccccc---cCCCCcccCcccceEEeceee-cCC----c--ccCCCCccceEEEEeec
Q 012533 162 ETDFVF---KSPSSGICFPRVKKFHVEIYK-PNM----P--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 162 ~~~~~~---~~p~~~~~~~~L~~L~L~~~~-~~~----~--lls~cp~Le~L~L~~c~ 209 (461)
.....+ .++.....+++|++|+|.++. .+. + +...||+|++|++.+|.
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 622111 111122357777777777666 331 1 44567777777776664
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.8e-18 Score=166.83 Aligned_cols=188 Identities=12% Similarity=0.071 Sum_probs=108.6
Q ss_pred ccccCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhcc---CCeeEeeccccccCCCCCCCcccchHHHHHHHHHhcC
Q 012533 15 KDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWAS---LPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSN 91 (461)
Q Consensus 15 ~D~is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~~---~p~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~ 91 (461)
...+++||||++.+||++|+.+|+++++.|||+|+.+... ...+++.. ...
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~---------~~~----------------- 59 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTG---------KNL----------------- 59 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTT---------CBC-----------------
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccc---------ccC-----------------
Confidence 3468999999999999999999999999999999998632 11222221 000
Q ss_pred cCCcceEEEEeccCCCCcchHHHHHHHHHhCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEeccc-cc-ccC
Q 012533 92 SVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETD-FV-FKS 169 (461)
Q Consensus 92 ~~~i~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~~-~~~ 169 (461)
. ...+......+++.+.+... .....+..++.+.+|++|+|+.. .. ..+
T Consensus 60 ----------------~----~~~~~~~~~~~l~~L~l~~n---------~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 60 ----------------H----PDVTGRLLSQGVIAFRCPRS---------FMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp ----------------C----HHHHHHHHHTTCSEEECTTC---------EECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred ----------------C----HHHHHhhhhccceEEEcCCc---------cccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 0 12233333456666665432 11222333556788888888721 11 112
Q ss_pred CCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCC--CceeEeecccccEEEEeec-ccccccCceeE
Q 012533 170 PSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDW--DADISISSQTLKRLNLMIG-GPIVFANEHQA 243 (461)
Q Consensus 170 p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~--~~~l~i~~~~L~~L~l~~~-~~~~~~~~~~~ 243 (461)
+.....+++|++|+|.++. .+.. .++.||.|++|.|.+|..+.+ +..+--..++|+.|.+.++ .. ...+....
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~ 189 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF-TEKHVQVA 189 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC-CHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc-ChHHHHHH
Confidence 3334567888888888877 5443 666788888888888754221 1111112566777777655 32 10001111
Q ss_pred EEecC-CceEEEEecc
Q 012533 244 TIEAP-KLEHLHVNDG 258 (461)
Q Consensus 244 ~i~ap-~L~~L~l~~~ 258 (461)
....| +|++|.+.++
T Consensus 190 ~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 190 VAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHSCTTCCEEECCSC
T ss_pred HHhcccCCCEEEeCCC
Confidence 22455 6777776654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.96 E-value=1.3e-09 Score=104.32 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=61.3
Q ss_pred HHHhCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--c
Q 012533 118 LAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--D 193 (461)
Q Consensus 118 ~a~~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--l 193 (461)
.+...++++|++... ....+|..++.+.+|++|+|+. ... .+|.....+++|++|+|++.. . .+ -
T Consensus 77 ~~~~~~l~~L~L~~n---------~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~ 145 (328)
T 4fcg_A 77 DATQPGRVALELRSV---------PLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS 145 (328)
T ss_dssp HHTSTTCCEEEEESS---------CCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG
T ss_pred cccccceeEEEccCC---------CchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH
Confidence 333467888888764 2347888888888999999983 222 456666788999999998887 5 33 6
Q ss_pred cCCCCccceEEEEeecC
Q 012533 194 FSICPVLEDLSIDYSLN 210 (461)
Q Consensus 194 ls~cp~Le~L~L~~c~~ 210 (461)
+..++.|+.|.|.+|..
T Consensus 146 l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 146 IASLNRLRELSIRACPE 162 (328)
T ss_dssp GGGCTTCCEEEEEEETT
T ss_pred HhcCcCCCEEECCCCCC
Confidence 78889999999999865
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.83 E-value=1.2e-09 Score=113.19 Aligned_cols=214 Identities=16% Similarity=0.017 Sum_probs=101.3
Q ss_pred ccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc---ccCCCCccceEEEEeecCCCCCceeEeeccccc
Q 012533 150 IYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP---DFSICPVLEDLSIDYSLNFDWDADISISSQTLK 225 (461)
Q Consensus 150 l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~---lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~ 225 (461)
+..+.+|+.|.++......+|.....+++|++|+|.++. .+.. ++..||+|+.|.|.++-.-..+..+.-.+++|+
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 334555666655522222223333456677777777666 3332 566777777777764322000111111246677
Q ss_pred EEEEee----------cccccccCceeEEEecCCceEEEEecceecee---ee-eCCCCceEEEEEeeeec-ccCCccch
Q 012533 226 RLNLMI----------GGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LV-YELHSLCDARLDIDYSR-VRSDPVRA 290 (461)
Q Consensus 226 ~L~l~~----------~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l-~~~~~L~~~~i~~~~~~-~~~~~~~~ 290 (461)
+|.+.+ +....+.+...+.-.+|+|++|.+.+...... .+ ..+++|+.+.+...... ...+....
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 777763 32211111111112357777777754332211 11 23666777766543200 00000001
Q ss_pred hHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 291 DHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 291 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
..+..++.++++++.|.++.+.-.-.+. .+.. ....+++|++|++..+.....++..+++.||+|++|+|...
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~---~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDL---GLSY----IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHH---HHHH----HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHH---HHHH----HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 1355556667777777775321110000 0000 11124567777776555455556667777777777777664
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.74 E-value=5.9e-10 Score=115.53 Aligned_cols=226 Identities=11% Similarity=0.050 Sum_probs=135.5
Q ss_pred ccCcccceEEeceee-cCC-c--ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeec--------ccccccCce
Q 012533 174 ICFPRVKKFHVEIYK-PNM-P--DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIG--------GPIVFANEH 241 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~-~--lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~--------~~~~~~~~~ 241 (461)
..+++|++|+|.++. .+. . ++..||+|++|.+.+|..-..+..+.-.+++|++|.+..+ ......+..
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 367899999999888 543 3 7889999999999988320011111123688999999542 111111111
Q ss_pred eEEEecCCceEEEEecceeceee---e-eCCCCceEEEEEeee-----ecccCCccchhHHHHHhhcCCCceEEEEecch
Q 012533 242 QATIEAPKLEHLHVNDGTLVSYL---V-YELHSLCDARLDIDY-----SRVRSDPVRADHALQLLKKLTNLKSLYLSCGT 312 (461)
Q Consensus 242 ~~~i~ap~L~~L~l~~~~~~~~~---l-~~~~~L~~~~i~~~~-----~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 312 (461)
.+.-.+|+|++|.+.+....... + ..+++|+.+.+.... ... +......+..++..+++++.|.|+. .
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~--~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT--LEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT--CCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc--CCchhhHHHHHHhhCCCccEEeecC-c
Confidence 12224799999977654433211 1 257899999888421 111 0000125667788999999999976 2
Q ss_pred hhccccchhhhhccccccCC-CCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeeecCCCcccccCccCCcccccc
Q 012533 313 IYALGEAYRHLYDAHQYFLP-TFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYC 391 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c 391 (461)
+.. . .+. .+. .+++|++|+|..+.....++..+++.||+|++|+|.....+ ..... ....
T Consensus 443 l~~--~---~~~-----~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~-----~~~~~---~~~~- 503 (594)
T 2p1m_B 443 LTD--K---VFE-----YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG-----DKALL---ANAS- 503 (594)
T ss_dssp CCH--H---HHH-----HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC-----HHHHH---HTGG-
T ss_pred ccH--H---HHH-----HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc-----HHHHH---HHHH-
Confidence 220 0 010 111 25789999998877666778888889999999999875221 00000 0011
Q ss_pred cccceEEEEEE-eCCCCchHHHHHHHhcCcCCc
Q 012533 392 LQFNVKKIEIL-YGDDDPLEPVKYLLKNCGVLD 423 (461)
Q Consensus 392 ~~~~Lk~v~i~-~g~~~e~~l~~~ll~~a~~Le 423 (461)
...+|+.+.+. +.. ..+-++.+.+..|.|+
T Consensus 504 ~l~~L~~L~l~~~~~--~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 504 KLETMRSLWMSSCSV--SFGACKLLGQKMPKLN 534 (594)
T ss_dssp GGGGSSEEEEESSCC--BHHHHHHHHHHCTTEE
T ss_pred hCCCCCEEeeeCCCC--CHHHHHHHHHhCCCCE
Confidence 13579999887 322 3445566666666664
No 7
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.70 E-value=1e-08 Score=69.34 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=34.1
Q ss_pred ccccCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhc
Q 012533 15 KDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWA 53 (461)
Q Consensus 15 ~D~is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~ 53 (461)
.+.++.||+|++.+||++||.+|+++++.|||+|+.+..
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999998654
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.68 E-value=9e-08 Score=92.35 Aligned_cols=222 Identities=11% Similarity=0.036 Sum_probs=137.6
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.++++|++... ....+|. .+..+++|++|+|+. ...-..|.....+++|++|+|++.. .+-. .+..
T Consensus 52 ~~L~~L~l~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 52 EAVKSLDLSNN---------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp TTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred ccCcEEECCCC---------cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 47788877653 1234444 455688999999982 2221123345678999999999888 5433 6888
Q ss_pred CCccceEEEEeecCCCCCce-eEe-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCCCc
Q 012533 197 CPVLEDLSIDYSLNFDWDAD-ISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELHSL 271 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~~L 271 (461)
++.|++|.+.++.. ..+.. -.+ ..++|+.|.+.++......... ..-..++|++|.+.+...... .+.++++|
T Consensus 123 l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 123 LSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp CTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 99999999988754 22222 112 3678999999876321100000 011357899999987654433 34567788
Q ss_pred eEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccc-cCCCCCCeeEEEEEEecc---
Q 012533 272 CDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQY-FLPTFSNLSFLEVRIREY--- 347 (461)
Q Consensus 272 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~--- 347 (461)
+.+.+..+.-. ..-..++..+++++.|.++...+. .+... .. .......++.+.+.....
T Consensus 201 ~~L~l~~n~l~--------~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~-~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 201 SHLILHMKQHI--------LLLEIFVDVTSSVECLELRDTDLD-------TFHFS-ELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp EEEEEECSCST--------THHHHHHHHTTTEEEEEEESCBCT-------TCCCC-------CCCCCCEEEEESCBCCHH
T ss_pred CeecCCCCccc--------cchhhhhhhcccccEEECCCCccc-------ccccc-ccccccccchhhccccccccccCc
Confidence 88887765321 012335667899999999988766 21110 00 223456777788775533
Q ss_pred CcchhhHHhhcCCCCceeEEEee
Q 012533 348 GWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 348 ~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
....+...+..+|+|++|++...
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSS
T ss_pred chhhhHHHHhcccCCCEEECCCC
Confidence 23346667889999999999774
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.62 E-value=3.2e-08 Score=95.16 Aligned_cols=226 Identities=13% Similarity=0.086 Sum_probs=143.5
Q ss_pred cceEEEEeccCCCCcchHHHHHHHHHhCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcc
Q 012533 95 ISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGI 174 (461)
Q Consensus 95 i~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~ 174 (461)
++.+.+....-. . +.. .....++++|.+.... ...+| .+..+++|++|+++...-...++ ..
T Consensus 68 L~~L~l~~n~i~-~---~~~---~~~l~~L~~L~L~~n~---------i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~ 129 (347)
T 4fmz_A 68 LEYLNLNGNQIT-D---ISP---LSNLVKLTNLYIGTNK---------ITDIS-ALQNLTNLRELYLNEDNISDISP-LA 129 (347)
T ss_dssp CCEEECCSSCCC-C---CGG---GTTCTTCCEEECCSSC---------CCCCG-GGTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred ccEEEccCCccc-c---chh---hhcCCcCCEEEccCCc---------ccCch-HHcCCCcCCEEECcCCcccCchh-hc
Confidence 788877654311 1 111 2223688999887641 22233 35668999999998321111222 46
Q ss_pred cCcccceEEeceee-cCCc-ccCCCCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCce
Q 012533 175 CFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLE 251 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~ 251 (461)
.+++|++|++.++. ..+. .+..++.|++|.+.+|.. ..... + ..++|+.|.+.++.... ... .-..++|+
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~--~~~l~~L~~L~l~~n~l~~---~~~-~~~l~~L~ 202 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP--IANLTDLYSLSLNYNQIED---ISP-LASLTSLH 202 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECTTSCCCC---CGG-GGGCTTCC
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh--hccCCCCCEEEccCCcccc---ccc-ccCCCccc
Confidence 88999999999987 6655 788999999999999875 32222 2 25789999998765421 111 22567888
Q ss_pred EEEEecceeceee-eeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhcccccc
Q 012533 252 HLHVNDGTLVSYL-VYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYF 330 (461)
Q Consensus 252 ~L~l~~~~~~~~~-l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~ 330 (461)
.|.+.+....... +..+++|+.+.+..+.-... . .+..+++++.|.++...+. .+. .
T Consensus 203 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~---------~-~~~~l~~L~~L~l~~n~l~-------~~~-----~ 260 (347)
T 4fmz_A 203 YFTAYVNQITDITPVANMTRLNSLKIGNNKITDL---------S-PLANLSQLTWLEIGTNQIS-------DIN-----A 260 (347)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---------G-GGTTCTTCCEEECCSSCCC-------CCG-----G
T ss_pred eeecccCCCCCCchhhcCCcCCEEEccCCccCCC---------c-chhcCCCCCEEECCCCccC-------CCh-----h
Confidence 8888876544322 56778888888766532110 1 1677888888888877655 111 3
Q ss_pred CCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 331 LPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 331 ~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
+..+++|++|++..+.... + ..+..+|+|+.|++...
T Consensus 261 ~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSS
T ss_pred HhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCC
Confidence 4566788888887653211 1 34667888888888764
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.61 E-value=2.2e-08 Score=100.15 Aligned_cols=199 Identities=14% Similarity=0.073 Sum_probs=95.8
Q ss_pred cccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEe----e
Q 012533 149 CIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISI----S 220 (461)
Q Consensus 149 ~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i----~ 220 (461)
.+..+.+|++|+|+. ......+....++++|++|+|.+.. ..-. .+..++.|++|.|.++.. ..+.. .
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~ 169 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI----ESIPSYAFNR 169 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC----CEECTTTTTT
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc----ceeCHhHHhc
Confidence 344466777777762 1111112233566777777777666 3321 566677777777766543 22111 1
Q ss_pred cccccEEEEeecccccccCceeEEEecCCceEEEEecceecee-eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhc
Q 012533 221 SQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY-LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKK 299 (461)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~ 299 (461)
.++|+.|.+.++.....-... ..-..++|++|.+.+...... .+..+++|+.+.+..+.-.+. ....+.+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~ 240 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI--------RPGSFHG 240 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE--------CGGGGTT
T ss_pred CCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc--------CcccccC
Confidence 356666666543211000000 001245667776665543322 234455666665544321100 0123455
Q ss_pred CCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeee
Q 012533 300 LTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 300 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
+++++.|.|+...+. .+.. ..+..+.+|++|+|..+... ......+..+++|+.|+|....
T Consensus 241 l~~L~~L~L~~n~l~-------~~~~---~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVS-------LIER---NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECTTSCCC-------EECT---TTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred ccCCCEEEeCCCcCc-------eECH---HHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence 666777776665544 1111 13445566666666544221 1112234456667766666543
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.59 E-value=2.4e-08 Score=100.51 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=32.4
Q ss_pred hhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeee
Q 012533 297 LKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 297 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
+..+++++.|.|+...+. .+. +..+..+.+|++|+|..+.... .....+..+|+|++|+|....
T Consensus 268 ~~~l~~L~~L~L~~n~l~-------~~~---~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLA-------VVE---PYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCTTCCEEECCSSCCS-------EEC---TTTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSC
T ss_pred ccccccCCEEECCCCccc-------eEC---HHHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCC
Confidence 345556666666555443 111 1134455666766666542211 112345566777777776643
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.58 E-value=5.3e-08 Score=93.63 Aligned_cols=254 Identities=12% Similarity=0.050 Sum_probs=163.2
Q ss_pred hCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCc
Q 012533 121 MRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPV 199 (461)
Q Consensus 121 ~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~ 199 (461)
..++++|++..+ ....+|. +..+++|++|+|+...-.. .+....+++|++|+|.+.. .+-..+..++.
T Consensus 65 ~~~L~~L~l~~n---------~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~ 133 (347)
T 4fmz_A 65 LTNLEYLNLNGN---------QITDISP-LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDNISDISPLANLTK 133 (347)
T ss_dssp CTTCCEEECCSS---------CCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTSCCCCCGGGTTCTT
T ss_pred cCCccEEEccCC---------ccccchh-hhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCCcccCchhhccCCc
Confidence 368999998764 1233444 5678999999998321111 2234789999999999888 44335889999
Q ss_pred cceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceeceee-eeCCCCceEEEEEe
Q 012533 200 LEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYL-VYELHSLCDARLDI 278 (461)
Q Consensus 200 Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~-l~~~~~L~~~~i~~ 278 (461)
|+.|.+.+|........ --..++|+.|.+.++.... ... .-..++|++|.+.+....... +..+++|+.+.+..
T Consensus 134 L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~---~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD---VTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp CCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC---CGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred eeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC---chh-hccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence 99999999965332222 1125789999998775421 111 235789999999987654332 56788888888766
Q ss_pred eeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhc
Q 012533 279 DYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNC 358 (461)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~ 358 (461)
+.-.+. ..+..+++++.|.++.+.+. .+. .+..+++|++|++..+.... + ..+..
T Consensus 209 n~l~~~----------~~~~~~~~L~~L~l~~n~l~-------~~~-----~~~~l~~L~~L~l~~n~l~~--~-~~~~~ 263 (347)
T 4fmz_A 209 NQITDI----------TPVANMTRLNSLKIGNNKIT-------DLS-----PLANLSQLTWLEIGTNQISD--I-NAVKD 263 (347)
T ss_dssp SCCCCC----------GGGGGCTTCCEEECCSSCCC-------CCG-----GGTTCTTCCEEECCSSCCCC--C-GGGTT
T ss_pred CCCCCC----------chhhcCCcCCEEEccCCccC-------CCc-----chhcCCCCCEEECCCCccCC--C-hhHhc
Confidence 532111 01678999999999987665 111 34567889999988664322 2 34678
Q ss_pred CCCCceeEEEeeecCCCcccccCccCCcccccccccceEEEEEE-eCCCCchHHHHHHHhcCcCCceEEEEee
Q 012533 359 SPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEIL-YGDDDPLEPVKYLLKNCGVLDKMIFRYV 430 (461)
Q Consensus 359 ~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~-~g~~~e~~l~~~ll~~a~~Le~~~i~~~ 430 (461)
+|+|+.|++....-.. +. ... ...+|+.+.+. ..-. ......+.+.+.|+.+.+...
T Consensus 264 l~~L~~L~l~~n~l~~-------~~---~~~--~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISD-------IS---VLN--NLSQLNSLFLNNNQLG---NEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CTTCCEEECCSSCCCC-------CG---GGG--GCTTCSEEECCSSCCC---GGGHHHHHTCTTCSEEECCSS
T ss_pred CCCcCEEEccCCccCC-------Ch---hhc--CCCCCCEEECcCCcCC---CcChhHhhccccCCEEEccCC
Confidence 8999999997742110 00 111 13568877776 2111 122234467788888877763
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.58 E-value=6.3e-08 Score=92.54 Aligned_cols=196 Identities=14% Similarity=0.050 Sum_probs=128.3
Q ss_pred cCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEeecccccEEEE
Q 012533 153 SETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNL 229 (461)
Q Consensus 153 ~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l 229 (461)
..+++.|+|+...-..+|+....+++|++|+|.+.. . .+ .+..++.|++|.|.++.. ..+...--..++|+.|.+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 368999999932222567767789999999999988 6 44 678999999999999865 222111112578999999
Q ss_pred eecccccccCceeE-------EEecCCceEEEEecceecee--eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcC
Q 012533 230 MIGGPIVFANEHQA-------TIEAPKLEHLHVNDGTLVSY--LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKL 300 (461)
Q Consensus 230 ~~~~~~~~~~~~~~-------~i~ap~L~~L~l~~~~~~~~--~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l 300 (461)
.++........... .-..++|++|.+.+.....+ .+..+++|+.+.+..+.-.+ +...+..+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~---------l~~~l~~l 228 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA---------LGPAIHHL 228 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC---------CCGGGGGC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc---------CchhhccC
Confidence 98644221111100 12488999999987654322 35678889888887653211 11136778
Q ss_pred CCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 301 TNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 301 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
++++.|.++.+.... .+ +..+..+.+|++|++..+.. ...+..-+..+|+|+.|+|...
T Consensus 229 ~~L~~L~Ls~n~~~~------~~----p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 229 PKLEELDLRGCTALR------NY----PPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp TTCCEEECTTCTTCC------BC----CCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCCEEECTTC
T ss_pred CCCCEEECcCCcchh------hh----HHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCCEEeCCCC
Confidence 899999998765441 11 11455677888888876532 1123333678899999998774
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.55 E-value=1.6e-07 Score=94.21 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=97.4
Q ss_pred ccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCce
Q 012533 174 ICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLE 251 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~ 251 (461)
..+++|++|+|.++. .+-..+..++.|+.|.+.+... .... + ..++|+.|.+.++... .... ....++|+
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~--~~~~--~~~l~~L~~L~l~~n~l~---~~~~-l~~l~~L~ 202 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT--DLKP--LANLTTLERLDISSNKVS---DISV-LAKLTNLE 202 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC--CCGG--GTTCTTCCEEECCSSCCC---CCGG-GGGCTTCS
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecCCccc--Cchh--hccCCCCCEEECcCCcCC---CChh-hccCCCCC
Confidence 445555555555554 3211344555555555543211 1111 1 1345666666544321 1110 11345666
Q ss_pred EEEEecceecee-eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhcccccc
Q 012533 252 HLHVNDGTLVSY-LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYF 330 (461)
Q Consensus 252 ~L~l~~~~~~~~-~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~ 330 (461)
+|.+.+...... .+..+++|+.+.+..+.-.+ ...+..+++++.|.++...+. .+. .
T Consensus 203 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~----------~~~l~~l~~L~~L~l~~n~l~-------~~~-----~ 260 (466)
T 1o6v_A 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKD----------IGTLASLTNLTDLDLANNQIS-------NLA-----P 260 (466)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCC-------CCG-----G
T ss_pred EEEecCCcccccccccccCCCCEEECCCCCccc----------chhhhcCCCCCEEECCCCccc-------cch-----h
Confidence 666665433221 23445666666554432110 013455666777777665444 111 2
Q ss_pred CCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeeecCCCcccccCccCCcccccccccceEEEEEE-eCCCCch
Q 012533 331 LPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEIL-YGDDDPL 409 (461)
Q Consensus 331 ~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~-~g~~~e~ 409 (461)
+..+.+|++|++..+... .+.. +..+|+|+.|++....-. .. .+-....+|+.+.+. ..-....
T Consensus 261 ~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~----------~~--~~~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQIS--NISP-LAGLTALTNLELNENQLE----------DI--SPISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp GTTCTTCSEEECCSSCCC--CCGG-GTTCTTCSEEECCSSCCS----------CC--GGGGGCTTCSEEECCSSCCSCCG
T ss_pred hhcCCCCCEEECCCCccC--cccc-ccCCCccCeEEcCCCccc----------Cc--hhhcCCCCCCEEECcCCcCCCch
Confidence 344566777766654321 1111 556777777777653110 00 001124568888776 2222222
Q ss_pred HHHHHHHhcCcCCceEEEEe
Q 012533 410 EPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 410 ~l~~~ll~~a~~Le~~~i~~ 429 (461)
. +.+.+.|+++.+..
T Consensus 326 ~-----~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 326 P-----VSSLTKLQRLFFYN 340 (466)
T ss_dssp G-----GGGCTTCCEEECCS
T ss_pred h-----hccCccCCEeECCC
Confidence 1 46788899888865
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.55 E-value=2.4e-07 Score=92.97 Aligned_cols=249 Identities=13% Similarity=0.098 Sum_probs=140.0
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCcc
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVL 200 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~L 200 (461)
.++++|++... ....+|. +..+.+|++|.++...-...++ ...+++|++|+|.++. .+-..+..++.|
T Consensus 68 ~~L~~L~Ls~n---------~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 136 (466)
T 1o6v_A 68 NNLTQINFSNN---------QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNL 136 (466)
T ss_dssp TTCCEEECCSS---------CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred cCCCEEECCCC---------ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCC
Confidence 56777776553 1223333 5567778888877221111222 4667788888887766 332246777888
Q ss_pred ceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee-eeeCCCCceEEEEEee
Q 012533 201 EDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY-LVYELHSLCDARLDID 279 (461)
Q Consensus 201 e~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~l~~~~~L~~~~i~~~ 279 (461)
++|.+.+|.. ..+..+ -..++|+.|.+.+... .... .-..++|++|++.+...... .+..+++|+.+.+..+
T Consensus 137 ~~L~l~~n~l-~~~~~~-~~l~~L~~L~l~~~~~----~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 137 NRLELSSNTI-SDISAL-SGLTSLQQLSFGNQVT----DLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209 (466)
T ss_dssp SEEEEEEEEE-CCCGGG-TTCTTCSEEEEEESCC----CCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CEEECCCCcc-CCChhh-ccCCcccEeecCCccc----Cchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCC
Confidence 8888887764 222211 1246777777754221 1111 12457788888876654332 2456677777776654
Q ss_pred eecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcC
Q 012533 280 YSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCS 359 (461)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~ 359 (461)
.-.+. . .+..+++++.|.++...+. .+. .+..+++|++|++..+... .+.. +..+
T Consensus 210 ~l~~~---------~-~~~~l~~L~~L~l~~n~l~-------~~~-----~l~~l~~L~~L~l~~n~l~--~~~~-~~~l 264 (466)
T 1o6v_A 210 QISDI---------T-PLGILTNLDELSLNGNQLK-------DIG-----TLASLTNLTDLDLANNQIS--NLAP-LSGL 264 (466)
T ss_dssp CCCCC---------G-GGGGCTTCCEEECCSSCCC-------CCG-----GGGGCTTCSEEECCSSCCC--CCGG-GTTC
T ss_pred ccccc---------c-cccccCCCCEEECCCCCcc-------cch-----hhhcCCCCCEEECCCCccc--cchh-hhcC
Confidence 22110 0 1556778888888776555 111 3445677888877765321 1111 6678
Q ss_pred CCCceeEEEeeecCCCcccccCccCCcccccccccceEEEEEE-eCCCCchHHHHHHHhcCcCCceEEEEee
Q 012533 360 PNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEIL-YGDDDPLEPVKYLLKNCGVLDKMIFRYV 430 (461)
Q Consensus 360 P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~-~g~~~e~~l~~~ll~~a~~Le~~~i~~~ 430 (461)
|+|++|++....-. .. .+-....+|+.+.+. ..-..... +.+.+.|+.+.+...
T Consensus 265 ~~L~~L~l~~n~l~----------~~--~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 265 TKLTELKLGANQIS----------NI--SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFN 319 (466)
T ss_dssp TTCSEEECCSSCCC----------CC--GGGTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSS
T ss_pred CCCCEEECCCCccC----------cc--ccccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCC
Confidence 88888888663211 00 001124578888776 22221111 578899999888763
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.54 E-value=2.1e-08 Score=99.95 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=96.8
Q ss_pred ccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeE---e-ec
Q 012533 150 IYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADIS---I-SS 221 (461)
Q Consensus 150 l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~---i-~~ 221 (461)
+..+.+|++|+|+. ......+.....+++|++|+|.+.. .+-. .+..++.|++|.|.++.. ..+. + ..
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~~~~l 159 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI----ESIPSYAFNRI 159 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC----CEECTTTTTTC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc----cccCHHHhhhC
Confidence 34466777777762 1111111223456777777777665 3221 566667777777766543 1111 1 13
Q ss_pred ccccEEEEeecccccccCceeEEEecCCceEEEEecceecee-eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcC
Q 012533 222 QTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY-LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKL 300 (461)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l 300 (461)
++|+.|.+.++......... ..-..++|++|.+.+.....+ .+..+++|+.+.+..+.-.+. ....+.++
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l 230 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI--------RPGSFQGL 230 (440)
T ss_dssp TTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE--------CTTTTTTC
T ss_pred cccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc--------ChhhhccC
Confidence 56666666543211100000 001246677777766543322 234455666666554311100 01244566
Q ss_pred CCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeeec
Q 012533 301 TNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVN 372 (461)
Q Consensus 301 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~~ 372 (461)
++|+.|.|+...+. .+.. ..+..+++|++|+|..+... ......+..+++|+.|+|.....
T Consensus 231 ~~L~~L~L~~n~l~-------~~~~---~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQ-------VIER---NAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECTTCCCC-------EECT---TSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccCCEEECCCCcee-------EECh---hhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence 67777777666554 1111 14445566777766544221 11123345667777777766543
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.54 E-value=2.1e-07 Score=90.99 Aligned_cols=143 Identities=13% Similarity=0.003 Sum_probs=77.0
Q ss_pred cCCceEEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhcc
Q 012533 247 APKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDA 326 (461)
Q Consensus 247 ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~ 326 (461)
.++|++|.+.+...........++|+.+.+..+.-.+ ...+..+++++.|.++...+. .+.
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~----------~~~l~~l~~L~~L~Ls~n~l~-------~~~-- 264 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD----------TAWLLNYPGLVEVDLSYNELE-------KIM-- 264 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCC-------EEE--
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCcc----------cHHHcCCCCccEEECCCCcCC-------CcC--
Confidence 3456666666655444444445566666665542210 125677888888888877655 111
Q ss_pred ccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeeecCCCcccccCccCCcccccc--cccceEEEEEEeC
Q 012533 327 HQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYC--LQFNVKKIEILYG 404 (461)
Q Consensus 327 ~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c--~~~~Lk~v~i~~g 404 (461)
+..+..+++|++|++..+.. ..+......+|+|++|++....-. .+|.. ...+|+.+.+...
T Consensus 265 -~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 265 -YHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-------------HVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp -SGGGTTCSSCCEEECCSSCC--CEEECSSSCCTTCCEEECCSSCCC-------------CCGGGHHHHTTCSEEECCSS
T ss_pred -hhHccccccCCEEECCCCcC--cccCcccCCCCCCCEEECCCCcce-------------ecCccccccCcCCEEECCCC
Confidence 11445667888888775432 122233356788888888764211 11111 1356777777611
Q ss_pred CCCchHHHHHHHhcCcCCceEEEEe
Q 012533 405 DDDPLEPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 405 ~~~e~~l~~~ll~~a~~Le~~~i~~ 429 (461)
.-..+. +...+.|+++.+..
T Consensus 329 ~i~~~~-----~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 329 SIVTLK-----LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCCCCC-----CCTTCCCSEEECCS
T ss_pred ccceeC-----chhhccCCEEEcCC
Confidence 111111 45567777766654
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.52 E-value=1e-08 Score=106.59 Aligned_cols=204 Identities=21% Similarity=0.173 Sum_probs=90.0
Q ss_pred cCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc---ccCCCCccceEEEEeecCCCCCceeE-
Q 012533 145 ELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP---DFSICPVLEDLSIDYSLNFDWDADIS- 218 (461)
Q Consensus 145 ~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~---lls~cp~Le~L~L~~c~~~~~~~~l~- 218 (461)
.+|..+..+++|++|+++. ...-..|.....+++|++|+|.+.. .+.. .+..++.|++|.+.++.. ..+.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~ 367 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI----ETSDC 367 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC----CEEEE
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc----ccccC
Confidence 4454444555555555551 1111111223455555555555554 3322 455556666666655443 1111
Q ss_pred ----e-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee----eeeCCCCceEEEEEeeeecccCCccc
Q 012533 219 ----I-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY----LVYELHSLCDARLDIDYSRVRSDPVR 289 (461)
Q Consensus 219 ----i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~----~l~~~~~L~~~~i~~~~~~~~~~~~~ 289 (461)
+ ..++|+.|.+.++...... .. ..-..++|++|.+.+...... .+..+++|+.+.+..+.-.+
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------ 439 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLK-TE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI------ 439 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEEC-TT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT------
T ss_pred cchhcccCCCCCEEECCCCcCCcCC-HH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC------
Confidence 1 1345666666544221000 00 001245666666655433211 13445566665554432110
Q ss_pred hhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEe
Q 012533 290 ADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 290 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
.....+..+++++.|.++...+. .........+..+.+|++|++..+.... .....+..+|+|++|+|..
T Consensus 440 --~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 440 --SSEQLFDGLPALQHLNLQGNHFP-------KGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp --TCTTTTTTCTTCCEEECTTCBCG-------GGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCS
T ss_pred --cCHHHHhCCCCCCEEECCCCCCC-------ccccccchhhccCCCccEEECCCCccCc-cChhhhccccCCCEEECCC
Confidence 01223455666777777665443 1000000033445666666665442211 1123345567777776655
Q ss_pred e
Q 012533 370 D 370 (461)
Q Consensus 370 ~ 370 (461)
.
T Consensus 510 N 510 (606)
T 3t6q_A 510 N 510 (606)
T ss_dssp S
T ss_pred C
Confidence 3
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.48 E-value=9e-08 Score=90.78 Aligned_cols=203 Identities=14% Similarity=0.026 Sum_probs=91.1
Q ss_pred cCCCcccccCcccEEEecc--cccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEe
Q 012533 145 ELPDCIYNSETLEILKLET--DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISI 219 (461)
Q Consensus 145 ~lp~~l~~~~~L~~L~L~~--~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i 219 (461)
.+|..+..+++|++|+|++ ...-.+|.....+++|++|+|.+.. .+.. .+..++.|++|.|.++..-......--
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4555555566666666651 1121233334555666666666555 4332 455566666666655543000000001
Q ss_pred ecccccEEEEeecccccccCceeEEEec-CCceEEEEecceecee---eeeCCCCceEEEEEeeeecccCCccchhHHHH
Q 012533 220 SSQTLKRLNLMIGGPIVFANEHQATIEA-PKLEHLHVNDGTLVSY---LVYELHSLCDARLDIDYSRVRSDPVRADHALQ 295 (461)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~~~~~~~i~a-p~L~~L~l~~~~~~~~---~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~ 295 (461)
..++|+.|.+.++...+. .+..+ ... ++|++|.+.+...... .+..++ |+.+.+..+.-.+ ....
T Consensus 147 ~l~~L~~L~L~~N~l~~~-~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~--------~~~~ 215 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGA-IPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG--------DASV 215 (313)
T ss_dssp GCTTCCEEECCSSCCEEE-CCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE--------CCGG
T ss_pred cCCCCCeEECcCCcccCc-CCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC--------cCCH
Confidence 134555555554432100 00000 012 2566666655433211 112222 5554444331110 0122
Q ss_pred HhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 296 LLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 296 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
.+..+++++.|.++...+. .... .+..+.+|++|++..+... ..+...+..+|+|+.|++...
T Consensus 216 ~~~~l~~L~~L~L~~N~l~-------~~~~----~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLA-------FDLG----KVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp GCCTTSCCSEEECCSSEEC-------CBGG----GCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSS
T ss_pred HHhcCCCCCEEECCCCcee-------eecC----cccccCCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCC
Confidence 4456677777777765543 1100 2334567777776644321 123344566777777777653
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.46 E-value=3.4e-08 Score=92.33 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=93.5
Q ss_pred CcccEEEecccccccCC-CCcccCcccceEEeceee-cCC-c-ccCCCCccceEEEEeecCCCCCceeEe-ecccccEEE
Q 012533 154 ETLEILKLETDFVFKSP-SSGICFPRVKKFHVEIYK-PNM-P-DFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKRLN 228 (461)
Q Consensus 154 ~~L~~L~L~~~~~~~~p-~~~~~~~~L~~L~L~~~~-~~~-~-lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~ 228 (461)
++|++|.|+...-..++ .....+++|++|+|.+.. .+- . .+..++.|++|.|.++..+..+..-.+ ..++|+.|.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45666666621111112 223456666666666655 322 1 556666677776666642111110011 135566666
Q ss_pred EeecccccccCceeEEEecCCceEEEEecceeceee---eeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceE
Q 012533 229 LMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYL---VYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKS 305 (461)
Q Consensus 229 l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 305 (461)
+.++...... ....-..++|++|.+.+....... +..+++|+.+.+..+.-... ....+..+++++.
T Consensus 112 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 112 LDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV--------PERAFRGLHSLDR 181 (285)
T ss_dssp CTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCE
T ss_pred CCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc--------CHHHhcCccccCE
Confidence 6544321100 000112456666666654433222 33455566555544311000 0113455677777
Q ss_pred EEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeee
Q 012533 306 LYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 306 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
|.++...+. .+. +..+..+++|++|++..+.... .....+..+|+|+.|++....
T Consensus 182 L~l~~n~l~-------~~~---~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 182 LLLHQNRVA-------HVH---PHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECCSSCCC-------EEC---TTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSC
T ss_pred EECCCCccc-------ccC---HhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCC
Confidence 777766544 111 1144456677777766543211 122445667777777776643
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.45 E-value=2.9e-07 Score=95.36 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=19.9
Q ss_pred CCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 333 TFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
.+++|++|+|..+... .+..-+..+|+|+.|+|...
T Consensus 299 ~l~~L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSS
T ss_pred cCCCCcEEECCCCCCC--ccCcccccCCCCCEEECCCC
Confidence 3556666666554321 23333456677777777653
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.45 E-value=5.2e-07 Score=92.76 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=15.3
Q ss_pred cCcccceEEeceee-cCCcccCCCCccceEEEEee
Q 012533 175 CFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYS 208 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c 208 (461)
.+++|++|++.+.. .+..-...+|.|++|.+.++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 34445555544444 32221144555555555544
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.45 E-value=1.3e-07 Score=92.65 Aligned_cols=231 Identities=15% Similarity=0.078 Sum_probs=115.2
Q ss_pred ccccCcccEEEecccccccCCC-CcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEe-ecccc
Q 012533 150 IYNSETLEILKLETDFVFKSPS-SGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISI-SSQTL 224 (461)
Q Consensus 150 l~~~~~L~~L~L~~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L 224 (461)
+..+.+|++|+|+...-...++ ....+++|++|+|.+.. .+-. ++..++.|++|.+.++.. .....-.+ ..++|
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSL 167 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCC
Confidence 3446667777776211111222 23566777777777666 3221 556677777777766643 11111011 13566
Q ss_pred cEEEEeecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCce
Q 012533 225 KRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLK 304 (461)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 304 (461)
+.|.+.++..... . .-..|+|+.|.+.+...... ...++|+++.+..+.-... -....++++
T Consensus 168 ~~L~l~~n~l~~~-~----~~~l~~L~~L~l~~n~l~~~--~~~~~L~~L~l~~n~l~~~-----------~~~~~~~L~ 229 (390)
T 3o6n_A 168 QNLQLSSNRLTHV-D----LSLIPSLFHANVSYNLLSTL--AIPIAVEELDASHNSINVV-----------RGPVNVELT 229 (390)
T ss_dssp CEEECCSSCCSBC-C----GGGCTTCSEEECCSSCCSEE--ECCSSCSEEECCSSCCCEE-----------ECCCCSSCC
T ss_pred CEEECCCCcCCcc-c----cccccccceeeccccccccc--CCCCcceEEECCCCeeeec-----------ccccccccc
Confidence 6666665433110 0 01246666666665543322 2334555555544311100 001235777
Q ss_pred EEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeeecCCCcccccCccC
Q 012533 305 SLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIE 384 (461)
Q Consensus 305 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~ 384 (461)
.|.++...+. ... .+..+++|++|++..+.... .....+..+|+|++|++....-.
T Consensus 230 ~L~l~~n~l~-------~~~-----~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~----------- 285 (390)
T 3o6n_A 230 ILKLQHNNLT-------DTA-----WLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV----------- 285 (390)
T ss_dssp EEECCSSCCC-------CCG-----GGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECCSSCCC-----------
T ss_pred EEECCCCCCc-------ccH-----HHcCCCCccEEECCCCcCCC-cChhHccccccCCEEECCCCcCc-----------
Confidence 7877776554 110 34456778888777553211 12344567788888888663210
Q ss_pred Cccccc--ccccceEEEEEE-eCCCCchHHHHHHHhcCcCCceEEEEe
Q 012533 385 PQFVPY--CLQFNVKKIEIL-YGDDDPLEPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 385 ~~~~~~--c~~~~Lk~v~i~-~g~~~e~~l~~~ll~~a~~Le~~~i~~ 429 (461)
.++. ....+|+.+.+. ..-. .+. . -+...+.|+++.+..
T Consensus 286 --~~~~~~~~l~~L~~L~L~~n~l~-~~~--~-~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 286 --ALNLYGQPIPTLKVLDLSHNHLL-HVE--R-NQPQFDRLENLYLDH 327 (390)
T ss_dssp --EEECSSSCCTTCCEEECCSSCCC-CCG--G-GHHHHTTCSEEECCS
T ss_pred --ccCcccCCCCCCCEEECCCCcce-ecC--c-cccccCcCCEEECCC
Confidence 0111 113578888876 2111 111 0 124457899888865
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.44 E-value=3.1e-07 Score=92.38 Aligned_cols=199 Identities=14% Similarity=0.011 Sum_probs=82.9
Q ss_pred ccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEe-ecccc
Q 012533 150 IYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISI-SSQTL 224 (461)
Q Consensus 150 l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L 224 (461)
+..+.+|++|+|+...-..+|+. ...+++|++|+|.+.. .+.. .+..++.|++|.|.++.. .....-.+ ..++|
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L 154 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSL 154 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCC
Confidence 33455555555552111112221 2345555555555554 2221 455555666666555432 00000001 13455
Q ss_pred cEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCC
Q 012533 225 KRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLT 301 (461)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~ 301 (461)
+.|.+.++..... .....-..++|+.|.+.+...... .+..+++|+.+.+..+...+. +........
T Consensus 155 ~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~~~~~ 224 (477)
T 2id5_A 155 EQLTLEKCNLTSI--PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT--------MTPNCLYGL 224 (477)
T ss_dssp CEEEEESCCCSSC--CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE--------ECTTTTTTC
T ss_pred CEEECCCCcCccc--ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc--------cCcccccCc
Confidence 6666554432100 000011345566666655433221 234455555555554311100 000011123
Q ss_pred CceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 302 NLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 302 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
+++.|.++...+. .+.. ..+..+.+|++|+|..+.... .....+..+++|++|.|...
T Consensus 225 ~L~~L~l~~n~l~-------~~~~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 225 NLTSLSITHCNLT-------AVPY---LAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCSEEEEESSCCC-------SCCH---HHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSS
T ss_pred cccEEECcCCccc-------ccCH---HHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCC
Confidence 5666666655443 1110 023445666666665442211 11123456677777776553
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.44 E-value=4e-07 Score=90.86 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=34.7
Q ss_pred HhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 296 LLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 296 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
.+..+++++.|.++...+. .+. +..+..+.+|++|++..+... ......+..+++|++|+|...
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~-------~~~---~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEIN-------KID---DNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp TTTTCTTCCEEECTTSCCC-------EEC---TTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSS
T ss_pred hcccCCCCCEEECCCCccc-------ccC---hhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCC
Confidence 4556677777777766544 111 113445567777766644321 112334556677777777653
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.42 E-value=6.8e-08 Score=103.25 Aligned_cols=156 Identities=15% Similarity=0.010 Sum_probs=72.0
Q ss_pred ccCCCcccccCcccEEEecc-cccccCCC--CcccCcccceEEeceee-cCCc---ccCCCCccceEEEEeecCCCCCce
Q 012533 144 VELPDCIYNSETLEILKLET-DFVFKSPS--SGICFPRVKKFHVEIYK-PNMP---DFSICPVLEDLSIDYSLNFDWDAD 216 (461)
Q Consensus 144 ~~lp~~l~~~~~L~~L~L~~-~~~~~~p~--~~~~~~~L~~L~L~~~~-~~~~---lls~cp~Le~L~L~~c~~~~~~~~ 216 (461)
..+|..+..+.+|++|+|+. ...-.+|. ....+++|++|+|++.. .+.. +...++.|++|+|.++.. .+...
T Consensus 90 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~ 168 (768)
T 3rgz_A 90 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANV 168 (768)
T ss_dssp EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC-EEETH
T ss_pred CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc-CCcCC
Confidence 34555555666677777661 11111222 33556666666666666 4332 345666666666666543 10000
Q ss_pred eE---e-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceece--eeeeCCCCceEEEEEeeeecccCCccch
Q 012533 217 IS---I-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVS--YLVYELHSLCDARLDIDYSRVRSDPVRA 290 (461)
Q Consensus 217 l~---i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~--~~l~~~~~L~~~~i~~~~~~~~~~~~~~ 290 (461)
.. + ..++|+.|.+.++...+ .... ...++|++|++.+..... ..+.++++|+.+.+..+.-.+
T Consensus 169 ~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~------- 237 (768)
T 3rgz_A 169 VGWVLSDGCGELKHLAISGNKISG---DVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG------- 237 (768)
T ss_dssp HHHHHTTCCTTCCEEECCSSEEES---CCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-------
T ss_pred hhhhhhccCCCCCEEECCCCcccc---cCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-------
Confidence 00 1 13456666665443211 0001 234566666665543221 114455556655554432110
Q ss_pred hHHHHHhhcCCCceEEEEecch
Q 012533 291 DHALQLLKKLTNLKSLYLSCGT 312 (461)
Q Consensus 291 ~~~~~~l~~l~~l~~L~l~~~~ 312 (461)
.+...+..+++++.|.++.+.
T Consensus 238 -~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 238 -DFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp -CHHHHTTTCSSCCEEECCSSC
T ss_pred -cccHHHhcCCCCCEEECCCCc
Confidence 123344555555555555443
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.39 E-value=1.1e-07 Score=90.73 Aligned_cols=61 Identities=23% Similarity=0.132 Sum_probs=27.7
Q ss_pred hhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEe
Q 012533 297 LKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 297 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
+..+++++.|.++...+. .+.. ..+..+.+|++|++..+... .+..-+..+|+|++|++..
T Consensus 212 ~~~l~~L~~L~Ls~n~l~-------~~~~---~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSIS-------AVDN---GSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp GTTCTTCCEEECCSSCCC-------EECT---TTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCS
T ss_pred hcCCCCCCEEECCCCcCc-------eeCh---hhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCC
Confidence 345555666666554433 1100 02333455555555543221 2222344556666666554
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.37 E-value=2.2e-06 Score=92.49 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=28.1
Q ss_pred hhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 297 LKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 297 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
+.++++++.|.|+.+.+. .+. +..+..+.+|+.|+|..+......- ..+. ++|+.|+|...
T Consensus 476 ~~~l~~L~~L~Ls~N~l~-------~~~---~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLN-------SLP---PGVFSHLTALRGLSLNSNRLTVLSH-NDLP--ANLEILDISRN 536 (844)
T ss_dssp SSCBCCEECCCCCHHHHT-------TCC---TTSSSSCCSCSEEEEESCCCSSCCC-CCCC--SCCCEEEEEEE
T ss_pred hcCcccccEEECCCCccc-------ccC---hhHccchhhhheeECCCCCCCccCh-hhhh--ccccEEECCCC
Confidence 344556666666555443 111 1134455666666666543211000 0011 66666666664
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.36 E-value=2.4e-06 Score=87.42 Aligned_cols=223 Identities=10% Similarity=0.008 Sum_probs=134.4
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSIC 197 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~c 197 (461)
..+++|++... .. ....|..+..+.+|++|+|+. ......|.....+++|++|+|++.. .+-. .+..+
T Consensus 26 ~~L~~L~Ls~n-------~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFN-------KI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSS-------CC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCC-------cc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 46778777653 11 122244556688999999982 2222123345678999999999888 5544 68889
Q ss_pred CccceEEEEeecCCCCCce--eEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCCCce
Q 012533 198 PVLEDLSIDYSLNFDWDAD--ISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELHSLC 272 (461)
Q Consensus 198 p~Le~L~L~~c~~~~~~~~--l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~~L~ 272 (461)
+.|++|.+.++.. ..... .--..++|++|.+.++......... ..-..++|++|.+.+...... .+..+++|+
T Consensus 98 ~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 98 SSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCcEEECCCCcc-cccchhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 9999999988764 21111 1112578999999876421100000 011357899999987654432 345567788
Q ss_pred EEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccc-cCCCCCCeeEEEEEEecc---C
Q 012533 273 DARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQY-FLPTFSNLSFLEVRIREY---G 348 (461)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~---~ 348 (461)
.+.+...... ..-..++..+++++.|.++...+. ... ..+. ....+.+|++|++..+.. .
T Consensus 176 ~L~l~~n~~~--------~~~~~~~~~l~~L~~L~L~~n~l~-------~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 176 HLTLHLSESA--------FLLEIFADILSSVRYLELRDTNLA-------RFQ-FSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp EEEEECSBST--------THHHHHHHSTTTBSEEEEESCBCT-------TCC-CCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred eEecccCccc--------ccchhhHhhcccccEEEccCCccc-------ccc-ccccchhhhhhcccceeccccccchhH
Confidence 7777654321 012234567899999999987665 111 0011 223467888888875532 3
Q ss_pred cchhhHHhhcCCCCceeEEEee
Q 012533 349 WWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 349 ~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
...+...+..+++|+.|.+...
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESC
T ss_pred HHHHHHHhhhhccccccccccc
Confidence 3345566677788888877654
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.35 E-value=9.4e-08 Score=99.20 Aligned_cols=209 Identities=18% Similarity=0.103 Sum_probs=128.2
Q ss_pred cCCCc-ccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEe-
Q 012533 145 ELPDC-IYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISI- 219 (461)
Q Consensus 145 ~lp~~-l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i- 219 (461)
.+|.. +..+++|++|+|+...-..+|.....+++|++|+|.+.. .+.. .+..+|.|+.|.+.++.....+..-.+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 34433 344788999998832222456666788899999998887 5432 778889999999988854101111111
Q ss_pred ecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCCCceEEEEEeeeecccCCccchhHHHHH
Q 012533 220 SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELHSLCDARLDIDYSRVRSDPVRADHALQL 296 (461)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~ 296 (461)
..++|+.|.+.++...............++|++|.+.+...... .+..+++|+.+.+..+.-.+. .....
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~ 420 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK-------DAQSP 420 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC-------TTCCT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc-------ccchh
Confidence 25788888887654311000000012457899999987654333 345678888888765532110 01124
Q ss_pred hhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcc--hhhHHhhcCCCCceeEEEee
Q 012533 297 LKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWW--ILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 297 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~l~~lL~~~P~Le~L~l~~~ 370 (461)
+..+++++.|.++...+. ... +..+..+++|++|++..+..... .....+..+++|++|++...
T Consensus 421 ~~~l~~L~~L~l~~n~l~-------~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLD-------ISS---EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TTTCTTCCEEECTTCCCB-------TTC---TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred hhCcccCCEEECCCCccC-------CcC---HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 667889999999887655 111 11455678899998876543221 12245778999999998764
No 31
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.34 E-value=3.6e-07 Score=86.39 Aligned_cols=138 Identities=10% Similarity=0.079 Sum_probs=77.9
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCcc
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVL 200 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~L 200 (461)
.++++|.+... ....+| .+..+++|++|+|+...-..+++ ...+++|+.|+|++.. .+-.-+..++.|
T Consensus 41 ~~L~~L~l~~~---------~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 109 (308)
T 1h6u_A 41 DGITTLSAFGT---------GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSI 109 (308)
T ss_dssp HTCCEEECTTS---------CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTC
T ss_pred CCcCEEEeeCC---------CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCC
Confidence 57888877553 123344 35567888888888221111222 4678888888888877 432267778888
Q ss_pred ceEEEEeecCCCCCceeEee-cccccEEEEeecccccccCceeEEEecCCceEEEEecceeceee-eeCCCCceEEEEE
Q 012533 201 EDLSIDYSLNFDWDADISIS-SQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYL-VYELHSLCDARLD 277 (461)
Q Consensus 201 e~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~-l~~~~~L~~~~i~ 277 (461)
++|.+.+|.. ..+.. +. .++|+.|.+.++... +... .-..++|++|.+.+....... +..+++|+.+.+.
T Consensus 110 ~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~---~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 110 KTLDLTSTQI-TDVTP--LAGLSNLQVLYLDLNQIT---NISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181 (308)
T ss_dssp CEEECTTSCC-CCCGG--GTTCTTCCEEECCSSCCC---CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CEEECCCCCC-CCchh--hcCCCCCCEEECCCCccC---cCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECC
Confidence 8888888764 33222 22 467777777665431 1111 113466666666654332211 3344444444443
No 32
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.33 E-value=2.6e-08 Score=95.34 Aligned_cols=228 Identities=15% Similarity=0.074 Sum_probs=124.0
Q ss_pred HHHHHHHHhC-CceEEEEEccCCCCCCCCCccccCCCccccc--CcccEEEecccccccCCCCcccCcccceEEeceee-
Q 012533 113 KFWVALAIMR-NVHEIEVNLPVDDPFEEGYEPVELPDCIYNS--ETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK- 188 (461)
Q Consensus 113 ~~wl~~a~~~-~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~- 188 (461)
.+|-..+... ..+.+++... . .. |..+... .+++.|++....-...++....+++|++|+|+++.
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~-------~---~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGK-------N---LH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTC-------B---CC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE
T ss_pred HHHHHHhcCchhheeeccccc-------c---CC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCc
Confidence 5677665433 3666666432 1 11 2223333 78999999832222223345679999999999998
Q ss_pred cCC-c--ccCCCCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCceEEEEecc-eece-
Q 012533 189 PNM-P--DFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDG-TLVS- 262 (461)
Q Consensus 189 ~~~-~--lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~-~~~~- 262 (461)
.+. . ++..||.|++|.|.+|.. .+...-.+ ..++|++|.+.++......+...+.-..|+|++|.+.++ ....
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBC-CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCccc-CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 654 4 889999999999999864 21100011 257888888876632111111112234678888888765 3321
Q ss_pred ---eeeeCCC-CceEEEEEeee-ecccCCccchhHHHHHhhcCCCceEEEEecchh-hccccchhhhhccccccCCCCCC
Q 012533 263 ---YLVYELH-SLCDARLDIDY-SRVRSDPVRADHALQLLKKLTNLKSLYLSCGTI-YALGEAYRHLYDAHQYFLPTFSN 336 (461)
Q Consensus 263 ---~~l~~~~-~L~~~~i~~~~-~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 336 (461)
..+..++ +|+.+.+..+. .. ....+...+..+++++.|.++.+.. . .. . ...+..+++
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~------~~~~l~~~~~~~~~L~~L~l~~~~~l~-------~~-~--~~~l~~l~~ 248 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNL------QKSDLSTLVRRCPNLVHLDLSDSVMLK-------ND-C--FQEFFQLNY 248 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGS------CHHHHHHHHHHCTTCSEEECTTCTTCC-------GG-G--GGGGGGCTT
T ss_pred HHHHHHHhcccCCCEEEeCCCcccC------CHHHHHHHHhhCCCCCEEeCCCCCcCC-------HH-H--HHHHhCCCC
Confidence 1234456 66666665542 11 0013444556666666666665542 1 00 0 002334466
Q ss_pred eeEEEEEEecc-CcchhhHHhhcCCCCceeEEEe
Q 012533 337 LSFLEVRIREY-GWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 337 L~~L~l~~~~~-~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
|++|++..+.. ...++ ..+..+|+|++|+|.+
T Consensus 249 L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTT
T ss_pred CCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccC
Confidence 66666655532 22222 2344566666666654
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.32 E-value=1.7e-07 Score=88.34 Aligned_cols=206 Identities=14% Similarity=0.092 Sum_probs=117.6
Q ss_pred cccCCCcccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCC---c-ccCCCCccceEEEEeecCCCCCce
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNM---P-DFSICPVLEDLSIDYSLNFDWDAD 216 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~---~-lls~cp~Le~L~L~~c~~~~~~~~ 216 (461)
...+|..+. ++|++|+|+...-..+|+. ...+++|++|+|.+.. ... . .+..++.|++|.|.++.. ..+..
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~ 95 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSS 95 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChh
Confidence 445555433 5788888883221133443 3678889999988776 421 1 445688899998888754 11111
Q ss_pred eEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCCCceEEEEEeeeecccCCccchhHH
Q 012533 217 ISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELHSLCDARLDIDYSRVRSDPVRADHA 293 (461)
Q Consensus 217 l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~ 293 (461)
.-...++|++|.+.++....... .......++|++|.+.+...... .+..+++|+.+.+..+.-.+. ..
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~ 167 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-------FL 167 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-------EE
T ss_pred hcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-------cc
Confidence 11125788888887553311100 00112457888888877644322 244567788777765422110 01
Q ss_pred HHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 294 LQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 294 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
...+..+++++.|.++...+. .+. +..+..+++|++|++..+..... ....+..+|+|+.|++...
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~-------~~~---~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLE-------QLS---PTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCC-------EEC---TTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTS
T ss_pred hhHHhhCcCCCEEECCCCCcC-------CcC---HHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCC
Confidence 224567788888888877655 111 11455667888888865532111 1112567888998888764
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.30 E-value=3e-07 Score=95.26 Aligned_cols=208 Identities=17% Similarity=0.133 Sum_probs=112.8
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.+++.|.+... ....+|. .+..+.+|++|+|+...-..+|+. ...+++|+.|+|++.. .+-. +++.
T Consensus 75 ~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLNDL---------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC---------CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 56777766543 1223332 444577777777772211122332 3567777777777776 4322 5677
Q ss_pred CCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEE
Q 012533 197 CPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDAR 275 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~ 275 (461)
++.|+.|.|.++.. .....-.+ ..++|+.|.+.++..... . .-..|+|+.|.+.+..... +...++|+.+.
T Consensus 146 l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~l~~n~l~~--l~~~~~L~~L~ 217 (597)
T 3oja_B 146 TPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVSYNLLST--LAIPIAVEELD 217 (597)
T ss_dssp CTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBC-C----GGGCTTCSEEECCSSCCSE--EECCTTCSEEE
T ss_pred CCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCc-C----hhhhhhhhhhhcccCcccc--ccCCchhheee
Confidence 77777777777653 11111011 146677777765543110 0 1134677777776654433 23345566665
Q ss_pred EEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHH
Q 012533 276 LDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPII 355 (461)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l 355 (461)
+..+.-.... ....++++.|.|+...+. .. ..+..+++|+.|+|..+.... .....
T Consensus 218 ls~n~l~~~~-----------~~~~~~L~~L~L~~n~l~-------~~-----~~l~~l~~L~~L~Ls~N~l~~-~~~~~ 273 (597)
T 3oja_B 218 ASHNSINVVR-----------GPVNVELTILKLQHNNLT-------DT-----AWLLNYPGLVEVDLSYNELEK-IMYHP 273 (597)
T ss_dssp CCSSCCCEEE-----------CSCCSCCCEEECCSSCCC-------CC-----GGGGGCTTCSEEECCSSCCCE-EESGG
T ss_pred ccCCcccccc-----------cccCCCCCEEECCCCCCC-------CC-----hhhccCCCCCEEECCCCccCC-CCHHH
Confidence 5443211000 011257888888877655 11 144556788888887653221 12345
Q ss_pred hhcCCCCceeEEEee
Q 012533 356 FNCSPNLESFVLIMD 370 (461)
Q Consensus 356 L~~~P~Le~L~l~~~ 370 (461)
+..+|+|+.|+|...
T Consensus 274 ~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 274 FVKMQRLERLYISNN 288 (597)
T ss_dssp GTTCSSCCEEECTTS
T ss_pred hcCccCCCEEECCCC
Confidence 667899999988764
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.30 E-value=4.5e-07 Score=93.19 Aligned_cols=202 Identities=15% Similarity=0.099 Sum_probs=109.1
Q ss_pred CCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeE-eeccc
Q 012533 146 LPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADIS-ISSQT 223 (461)
Q Consensus 146 lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~-i~~~~ 223 (461)
.|..+..+++|++|++....-..+|.....+ +|++|++.++. . .+-...+|.|+.|.+.++.. . .... ...++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~-~--~~~~~~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKG-G--NAFSEVDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBS-C--CBCCCCBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcc-c--cccccccCCC
Confidence 3444445677777777632222344444555 77777777766 4 33225677788888877765 1 1111 33577
Q ss_pred ccEEEEeecccccccCceeEEEecCCceEEEEecceecee--eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCC
Q 012533 224 LKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY--LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLT 301 (461)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~ 301 (461)
|+.|.+.++...............++|++|.+.+...... .+..+++|+.+.+..+.-.+. .....+..++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~l~ 421 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-------SEFSVFLSLR 421 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC-------TTSCTTTTCT
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc-------cchhhhhcCC
Confidence 8888876554210000000011357788888876544322 256777888777765422110 0011345677
Q ss_pred CceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEe
Q 012533 302 NLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 302 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
+++.|.++...+. ... +..+..+.+|++|++..+......+...+..+|+|++|+|..
T Consensus 422 ~L~~L~l~~n~l~-------~~~---~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 422 NLIYLDISHTHTR-------VAF---NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp TCCEEECTTSCCE-------ECC---TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred CCCEEeCcCCccc-------ccc---hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 7888887766544 110 113445667777776654322222334556677777777755
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.30 E-value=1.3e-06 Score=82.47 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=97.6
Q ss_pred cCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEee-cccccEEEEe
Q 012533 153 SETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISIS-SQTLKRLNLM 230 (461)
Q Consensus 153 ~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~ 230 (461)
.++|++|++....-..++ ....+++|++|+|++.. .+-.-+..++.|+.|.|.++.. ..+.. +. .++|+.|.+.
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL-KNVSA--IAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC-SCCGG--GTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC-CCchh--hcCCCCCCEEECC
Confidence 556777777622111112 33567777777777666 3322366777777777777654 22221 11 4567777776
Q ss_pred ecccccccCceeEEEecCCceEEEEecceeceee-eeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEe
Q 012533 231 IGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYL-VYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLS 309 (461)
Q Consensus 231 ~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~-l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 309 (461)
++... .... .-..++|++|.+.+....... +..+++|+.+.+..+.-.+ +. .+..+++++.|.++
T Consensus 116 ~n~l~---~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~---------~~-~l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 116 STQIT---DVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD---------LT-PLANLSKLTTLKAD 181 (308)
T ss_dssp TSCCC---CCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC---------CG-GGTTCTTCCEEECC
T ss_pred CCCCC---Cchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC---------Ch-hhcCCCCCCEEECC
Confidence 55431 1111 123467777777665443221 4556677766665542110 01 15566777777777
Q ss_pred cchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 310 CGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
...+. .+. .+..+.+|++|++..+... .+.. +..+|+|+.|++...
T Consensus 182 ~n~l~-------~~~-----~l~~l~~L~~L~L~~N~l~--~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 182 DNKIS-------DIS-----PLASLPNLIEVHLKNNQIS--DVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp SSCCC-------CCG-----GGGGCTTCCEEECTTSCCC--BCGG-GTTCTTCCEEEEEEE
T ss_pred CCccC-------cCh-----hhcCCCCCCEEEccCCccC--cccc-ccCCCCCCEEEccCC
Confidence 66544 111 2334566776666654321 1111 466777777777664
No 37
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.28 E-value=1.8e-08 Score=98.67 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=22.3
Q ss_pred cCcccceEEeceee-cCC----c--ccCCCCccceEEEEeec
Q 012533 175 CFPRVKKFHVEIYK-PNM----P--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~~~----~--lls~cp~Le~L~L~~c~ 209 (461)
.+++|++|+|++.. .+. + .+..||.|+.|.|.+|.
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 55677777777666 442 1 45667777777777664
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.27 E-value=5.2e-08 Score=92.42 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=146.8
Q ss_pred cceEEEEeccCCCCcchHHHHHHHHHhCCceEEEEEc-cCCCCCCCCCccccCCCcccccCcccEEEec-ccccccCCCC
Q 012533 95 ISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNL-PVDDPFEEGYEPVELPDCIYNSETLEILKLE-TDFVFKSPSS 172 (461)
Q Consensus 95 i~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~-~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~-~~~~~~~p~~ 172 (461)
|+.+.+....-... ..+...+. .-..+++|++.. . . -...+|..+..+++|++|+|+ ....-..|..
T Consensus 52 l~~L~L~~~~l~~~-~~~~~~l~--~l~~L~~L~L~~~n-------~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 52 VNNLDLSGLNLPKP-YPIPSSLA--NLPYLNFLYIGGIN-------N-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp EEEEEEECCCCSSC-EECCGGGG--GCTTCSEEEEEEET-------T-EESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred EEEEECCCCCccCC-cccChhHh--CCCCCCeeeCCCCC-------c-ccccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 77777775442210 01111111 126899999973 2 1 133577778889999999998 2222234555
Q ss_pred cccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeE--e-ec-ccccEEEEeecccccccCceeEEE
Q 012533 173 GICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADIS--I-SS-QTLKRLNLMIGGPIVFANEHQATI 245 (461)
Q Consensus 173 ~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~--i-~~-~~L~~L~l~~~~~~~~~~~~~~~i 245 (461)
...+++|++|+|++.. .+.. .+..+|.|++|.+.++.. ...+. + .. ++|+.|.+.++...+.. .. .+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l---~~~~p~~l~~l~~~L~~L~L~~N~l~~~~-~~--~~ 194 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI---SGAIPDSYGSFSKLFTSMTISRNRLTGKI-PP--TF 194 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC---EEECCGGGGCCCTTCCEEECCSSEEEEEC-CG--GG
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc---cCcCCHHHhhhhhcCcEEECcCCeeeccC-Ch--HH
Confidence 6789999999999998 6554 788999999999998764 11111 1 12 38999999866431100 00 11
Q ss_pred ecCCceEEEEecceece---eeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhh
Q 012533 246 EAPKLEHLHVNDGTLVS---YLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRH 322 (461)
Q Consensus 246 ~ap~L~~L~l~~~~~~~---~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 322 (461)
....|++|.+.+..... ..+..+++|+.+.+..+.-.+. ...+..+++++.|.++...+..
T Consensus 195 ~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~~~~l~~L~~L~Ls~N~l~~------- 258 (313)
T 1ogq_A 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD---------LGKVGLSKNLNGLDLRNNRIYG------- 258 (313)
T ss_dssp GGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB---------GGGCCCCTTCCEEECCSSCCEE-------
T ss_pred hCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee---------cCcccccCCCCEEECcCCcccC-------
Confidence 22249999998876543 2356788999988876532110 1125678999999999876551
Q ss_pred hhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 323 LYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 323 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
.. +..+..+.+|++|++..+.... .+... ..+|+|+.|.+...
T Consensus 259 ~~---p~~l~~l~~L~~L~Ls~N~l~~-~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 259 TL---PQGLTQLKFLHSLNVSFNNLCG-EIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CC---CGGGGGCTTCCEEECCSSEEEE-ECCCS-TTGGGSCGGGTCSS
T ss_pred cC---ChHHhcCcCCCEEECcCCcccc-cCCCC-ccccccChHHhcCC
Confidence 10 1145567889999988653210 11222 56778888877653
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.27 E-value=3.1e-06 Score=81.43 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=52.8
Q ss_pred cccCCCcccccCcccEEEecccccccCCC-CcccCcccceEEeceee-cCC-c-ccCCCCccceEEEEeecCCCCCceeE
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPS-SGICFPRVKKFHVEIYK-PNM-P-DFSICPVLEDLSIDYSLNFDWDADIS 218 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~~-~-lls~cp~Le~L~L~~c~~~~~~~~l~ 218 (461)
...+|..++ ++|++|+|+...-..+|+ ....+++|++|+|.+.. .+- . .+..++.|++|+|.++.. ..+..-.
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~ 119 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSW 119 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhH
Confidence 445665443 478888888221111232 34678889999998877 432 2 678888999998888754 2111110
Q ss_pred e-ecccccEEEEeecc
Q 012533 219 I-SSQTLKRLNLMIGG 233 (461)
Q Consensus 219 i-~~~~L~~L~l~~~~ 233 (461)
+ ..++|+.|.+.++.
T Consensus 120 ~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNP 135 (353)
T ss_dssp HTTCTTCSEEECTTCC
T ss_pred hCCCccCCEEECCCCC
Confidence 1 14567777776543
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.27 E-value=3.3e-08 Score=93.38 Aligned_cols=205 Identities=17% Similarity=0.124 Sum_probs=96.0
Q ss_pred cCCCcc-cccCcccEEEecc-ccc-cc-CCCCcccCcccceEEeceee-cCCc-ccCCCCccceEEEEeecCCCCCce--
Q 012533 145 ELPDCI-YNSETLEILKLET-DFV-FK-SPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSLNFDWDAD-- 216 (461)
Q Consensus 145 ~lp~~l-~~~~~L~~L~L~~-~~~-~~-~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~~~~~~~~-- 216 (461)
.+|..+ ..+++|++|+|+. ... .. .+.....+++|++|+|++.. ..-. .+..++.|++|.+.++.. .....
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~ 120 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFS 120 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc-cccccch
Confidence 444443 2356666666651 110 00 01122345666666666655 3211 355566666666655432 11111
Q ss_pred eEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceece----eeeeCCCCceEEEEEeeeecccCCccchhH
Q 012533 217 ISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVS----YLVYELHSLCDARLDIDYSRVRSDPVRADH 292 (461)
Q Consensus 217 l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~ 292 (461)
.--..++|+.|.+.++...... ....-..++|++|.+.+..... ..+..+++|+.+.+..+.-.+.
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------- 190 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-------- 190 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECS--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE--------
T ss_pred hhhhccCCCEEECCCCcCCccc--hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc--------
Confidence 0011355666666544221000 0000124667777776654332 2234566676666654321100
Q ss_pred HHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCC-CCceeEEEeee
Q 012533 293 ALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSP-NLESFVLIMDV 371 (461)
Q Consensus 293 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P-~Le~L~l~~~~ 371 (461)
....+..+++++.|.++...+. .+.. ..+..+.+|++|++..+..... ....+..+| +|+.|++....
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~-------~~~~---~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFF-------SLDT---FPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCS-------BCCS---GGGTTCTTCCEEECTTSCCCBC-SSSSCCCCCTTCCEEECTTCC
T ss_pred CHHHhcCCCCCCEEECCCCccC-------ccCh---hhccCcccCCEeECCCCCCccc-CHHHHHhhhccCCEEEccCCC
Confidence 0124456777888888776554 1111 0344567777777765432111 112233443 77777776643
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=2.9e-07 Score=98.74 Aligned_cols=130 Identities=11% Similarity=0.016 Sum_probs=67.8
Q ss_pred CCCcccccCcccEEEeccccccc------------------CCCCcc--cCcccceEEeceee-cCCc--ccCCCCccce
Q 012533 146 LPDCIYNSETLEILKLETDFVFK------------------SPSSGI--CFPRVKKFHVEIYK-PNMP--DFSICPVLED 202 (461)
Q Consensus 146 lp~~l~~~~~L~~L~L~~~~~~~------------------~p~~~~--~~~~L~~L~L~~~~-~~~~--lls~cp~Le~ 202 (461)
+|..+..+++|++|+|+...-.. +|.... .+++|+.|+|+++. .+.+ .+..++.|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67666777777777777211111 455544 67777777777776 5554 6677777777
Q ss_pred EEEEeecCCCC--C----ceeE---eecccccEEEEeecccccccCcee--EEEecCCceEEEEecceecee-eeeCCCC
Q 012533 203 LSIDYSLNFDW--D----ADIS---ISSQTLKRLNLMIGGPIVFANEHQ--ATIEAPKLEHLHVNDGTLVSY-LVYELHS 270 (461)
Q Consensus 203 L~L~~c~~~~~--~----~~l~---i~~~~L~~L~l~~~~~~~~~~~~~--~~i~ap~L~~L~l~~~~~~~~-~l~~~~~ 270 (461)
|.|.++..+.+ + ..+. ...++|+.|.+.++... .... ..-..++|+.|.+++.....+ .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCc
Confidence 77777652111 0 0000 01236666666655431 0000 011345666666665433222 2344555
Q ss_pred ceEEEEEe
Q 012533 271 LCDARLDI 278 (461)
Q Consensus 271 L~~~~i~~ 278 (461)
|+.+.+..
T Consensus 597 L~~L~Ls~ 604 (876)
T 4ecn_A 597 LTDLKLDY 604 (876)
T ss_dssp ESEEECCS
T ss_pred ceEEECcC
Confidence 55555543
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.26 E-value=5.8e-07 Score=90.66 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=23.6
Q ss_pred ccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeec
Q 012533 174 ICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIG 232 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~ 232 (461)
..+++|+.|+|++.. .+ +...|.|+.|.+.+|.. .....-..++|+.|.+.++
T Consensus 77 ~~l~~L~~L~Ls~N~l~~---l~~~~~L~~L~L~~N~l---~~~~~~~l~~L~~L~L~~N 130 (487)
T 3oja_A 77 ESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNI---SRVSCSRGQGKKNIYLANN 130 (487)
T ss_dssp TTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCC---CCEEECCCSSCEEEECCSS
T ss_pred ccCCCCCEEEecCCcCCC---CCCCCCcCEEECcCCcC---CCCCccccCCCCEEECCCC
Confidence 445555555555544 21 11225555555555543 1111112345555555544
No 43
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.26 E-value=2.6e-07 Score=98.73 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC--cccccCcccEEEecc-cccccCCCCc-ccCcccceEEeceee-cCCc----
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD--CIYNSETLEILKLET-DFVFKSPSSG-ICFPRVKKFHVEIYK-PNMP---- 192 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~--~l~~~~~L~~L~L~~-~~~~~~p~~~-~~~~~L~~L~L~~~~-~~~~---- 192 (461)
.++++|++... . -.-.+|. .+..+.+|++|+|+. ......|... ..+++|++|+|++.. .+..
T Consensus 100 ~~L~~L~Ls~n-------~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 100 ASLTSLDLSRN-------S-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp TTCCEEECCSS-------E-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CCCCEEECCCC-------c-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 46777776542 1 1223455 666788888888872 2222223222 567888888887777 4432
Q ss_pred -ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceece---eeeeCC
Q 012533 193 -DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVS---YLVYEL 268 (461)
Q Consensus 193 -lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~l~~~ 268 (461)
.+..|+.|++|.+.++.. .+.... -..++|+.|.+.++.... .....-..++|++|++.+....+ ..+.++
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l-~~~~~~-~~l~~L~~L~Ls~n~l~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 246 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKI-SGDVDV-SRCVNLEFLDVSSNNFST---GIPFLGDCSALQHLDISGNKLSGDFSRAISTC 246 (768)
T ss_dssp HHTTCCTTCCEEECCSSEE-ESCCBC-TTCTTCCEEECCSSCCCS---CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTC
T ss_pred hhhccCCCCCEEECCCCcc-cccCCc-ccCCcCCEEECcCCcCCC---CCcccccCCCCCEEECcCCcCCCcccHHHhcC
Confidence 267777777777777654 111111 124667777766554311 11111234666666666544321 123445
Q ss_pred CCceEEEEEee
Q 012533 269 HSLCDARLDID 279 (461)
Q Consensus 269 ~~L~~~~i~~~ 279 (461)
++|+.+.+..+
T Consensus 247 ~~L~~L~Ls~n 257 (768)
T 3rgz_A 247 TELKLLNISSN 257 (768)
T ss_dssp SSCCEEECCSS
T ss_pred CCCCEEECCCC
Confidence 55555555443
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.26 E-value=2.6e-07 Score=92.28 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=84.3
Q ss_pred CCceEEEEecceecee---eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhh
Q 012533 248 PKLEHLHVNDGTLVSY---LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLY 324 (461)
Q Consensus 248 p~L~~L~l~~~~~~~~---~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 324 (461)
++|++|.+.+...... .+..+++|+.+.+..+.-.+ .....+..+++++.|.|+...+. .+.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~-------~~~ 339 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK--------IDDNAFWGLTHLLKLNLSQNFLG-------SID 339 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCSSCCC-------EEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccc--------cChhHhcCcccCCEEECCCCccC-------CcC
Confidence 6788888887654432 24567889988886652211 01224567899999999987655 111
Q ss_pred ccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeeecCCCcccccCccCCcccccccccceEEEEEE--
Q 012533 325 DAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEIL-- 402 (461)
Q Consensus 325 ~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~-- 402 (461)
+..+..+.+|++|++..+.... .....+..+|+|++|++....-.. ..... . ....+|+.+.+.
T Consensus 340 ---~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~------~--~~l~~L~~L~l~~N 405 (455)
T 3v47_A 340 ---SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKS--VPDGI------F--DRLTSLQKIWLHTN 405 (455)
T ss_dssp ---GGGGTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSC--CCTTT------T--TTCTTCCEEECCSS
T ss_pred ---hhHhcCcccCCEEECCCCcccc-cChhhccccccccEEECCCCcccc--CCHhH------h--ccCCcccEEEccCC
Confidence 1145667889999888654311 123445678999999997742110 00000 0 013578888887
Q ss_pred --eCCCCchHHHHHHHhc
Q 012533 403 --YGDDDPLEPVKYLLKN 418 (461)
Q Consensus 403 --~g~~~e~~l~~~ll~~ 418 (461)
.+....+.+....++.
T Consensus 406 ~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 406 PWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp CBCCCTTTTHHHHHHHHH
T ss_pred CcccCCCcchHHHHHHHh
Confidence 4555556655444443
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.25 E-value=1e-06 Score=81.50 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=32.5
Q ss_pred CcccEEEecccccccCCC-CcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecC
Q 012533 154 ETLEILKLETDFVFKSPS-SGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 154 ~~L~~L~L~~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~ 210 (461)
.+|++|+|+...-..+++ ....+++|++|+|.+.. ..-. ++..++.|++|.|.++..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 457777776211111222 33567777777777666 3221 566777777777776543
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.25 E-value=1.9e-06 Score=86.01 Aligned_cols=202 Identities=15% Similarity=0.106 Sum_probs=132.1
Q ss_pred CCceEEEEEccCCCCCCCCCccccCC-CcccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cC-Cc-ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELP-DCIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PN-MP-DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~-~~-lls~ 196 (461)
.++++|++... ....++ ..+..+.+|++|+|+...-..+|+. ...+++|++|+|++.. .. .. .+..
T Consensus 99 ~~L~~L~Ls~n---------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 169 (452)
T 3zyi_A 99 HHLEVLQLGRN---------SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169 (452)
T ss_dssp TTCCEEECCSS---------CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCEEECCCC---------ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhc
Confidence 57888877653 122333 4445589999999993221123333 4679999999999888 43 22 7899
Q ss_pred CCccceEEEEeecCCCCCceeEe----ecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCC
Q 012533 197 CPVLEDLSIDYSLNFDWDADISI----SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELH 269 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~l~i----~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~ 269 (461)
+|.|+.|.|.+|.. +..+.. ..++|+.|.+.++.... ... ....++|++|++++...... .+.+++
T Consensus 170 l~~L~~L~l~~~~~---l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 170 VPSLMRLDLGELKK---LEYISEGAFEGLFNLKYLNLGMCNIKD---MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp CTTCCEEECCCCTT---CCEECTTTTTTCTTCCEEECTTSCCSS---CCC-CTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred CCcccEEeCCCCCC---ccccChhhccCCCCCCEEECCCCcccc---ccc-ccccccccEEECcCCcCcccCcccccCcc
Confidence 99999999999866 444322 25789999998765421 111 22568999999998765443 356788
Q ss_pred CceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEe----
Q 012533 270 SLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR---- 345 (461)
Q Consensus 270 ~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---- 345 (461)
+|+.+.+..+.-... ....+..+++|+.|.|+...+. .+.. ..+..+.+|++|+|..+
T Consensus 243 ~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~-------~~~~---~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLI--------ERNAFDGLASLVELNLAHNNLS-------SLPH---DLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECTTSCCCEE--------CTTTTTTCTTCCEEECCSSCCS-------CCCT---TSSTTCTTCCEEECCSSCEEC
T ss_pred CCCEEEeCCCcCceE--------CHHHhcCCCCCCEEECCCCcCC-------ccCh---HHhccccCCCEEEccCCCcCC
Confidence 999888765422110 1224677899999999988666 2211 14556789999999854
Q ss_pred ccCcchhhHHhh
Q 012533 346 EYGWWILPIIFN 357 (461)
Q Consensus 346 ~~~~~~l~~lL~ 357 (461)
.....++...++
T Consensus 305 dC~~~~l~~~l~ 316 (452)
T 3zyi_A 305 DCDILWLAWWLR 316 (452)
T ss_dssp STTTHHHHHHHH
T ss_pred CCCchHHHHHHH
Confidence 334444544444
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.22 E-value=5.8e-07 Score=85.28 Aligned_cols=166 Identities=10% Similarity=0.097 Sum_probs=82.6
Q ss_pred ccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceE
Q 012533 174 ICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEH 252 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~ 252 (461)
..+++|++|+|++.. .+..-+..++.|++|.|.++.. ..+. ..++|+.|.+.++... .......++|++
T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l----~~l~-~~~~L~~L~l~~n~l~-----~~~~~~~~~L~~ 124 (317)
T 3o53_A 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV----QELL-VGPSIETLHAANNNIS-----RVSCSRGQGKKN 124 (317)
T ss_dssp TTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEE----EEEE-ECTTCCEEECCSSCCS-----EEEECCCSSCEE
T ss_pred hCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcc----cccc-CCCCcCEEECCCCccC-----CcCccccCCCCE
Confidence 345555555555544 2211245555555555555432 2211 1355555555544321 111112455666
Q ss_pred EEEecceecee---eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccc
Q 012533 253 LHVNDGTLVSY---LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQY 329 (461)
Q Consensus 253 L~l~~~~~~~~---~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~ 329 (461)
|.+.+...... .+..+++|+.+.+..+.-.+. ....+...+++++.|.++...+. .+.
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~l~~L~~L~L~~N~l~-------~~~----- 185 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLEHLNLQYNFIY-------DVK----- 185 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCCEEECTTSCCC-------EEE-----
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-------cHHHHhhccCcCCEEECCCCcCc-------ccc-----
Confidence 66665443221 233455666655544311000 11224456788888888877665 221
Q ss_pred cCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 330 FLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
....+.+|++|++..+... .+..-+..+|+|+.|++...
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 186 GQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp CCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS
T ss_pred cccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCC
Confidence 2223677888887755322 22222567788888888663
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.22 E-value=6.3e-07 Score=92.94 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=55.5
Q ss_pred ccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEe-ecccccEE
Q 012533 150 IYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKRL 227 (461)
Q Consensus 150 l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L 227 (461)
+..+.+|+.|++....-..+| ....+++|++|++.++. ..---+ .+|.|+.|.+.++.. ...+.+ ..++|+.|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~---~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKG---SISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSS---CEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcC---ccchhhccCCCCCEE
Confidence 344566666666622111122 33456666666666665 221122 666666666666643 222211 24556666
Q ss_pred EEeecccccccCceeEEEecCCceEEEEecceecee--eeeCCCCceEEEEEe
Q 012533 228 NLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY--LVYELHSLCDARLDI 278 (461)
Q Consensus 228 ~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~l~~~~~L~~~~i~~ 278 (461)
.+.++...............++|++|.+.+...... .+..+++|+.+.+..
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCC
Confidence 665442200000000001335566666555433221 233455555555543
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.21 E-value=4.8e-07 Score=94.46 Aligned_cols=225 Identities=12% Similarity=0.048 Sum_probs=137.3
Q ss_pred CCceEEEEEccCCCC--CCCCCccc-------cCCCccc--ccCcccEEEecc-cccccCCCCcccCcccceEEeceee-
Q 012533 122 RNVHEIEVNLPVDDP--FEEGYEPV-------ELPDCIY--NSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK- 188 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~--~~~~~~~~-------~lp~~l~--~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~- 188 (461)
.++++|++....-.. ....|.+. .+|..+. .+.+|++|+|+. ...-.+|.....+++|++|+|.+..
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 588999998752000 00001011 1898888 899999999993 3333456667889999999999885
Q ss_pred -cC-Cc--c------cCCCCccceEEEEeecCCCCCcee-Ee-ecccccEEEEeecccccccCceeEEEecCCceEEEEe
Q 012533 189 -PN-MP--D------FSICPVLEDLSIDYSLNFDWDADI-SI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVN 256 (461)
Q Consensus 189 -~~-~~--l------ls~cp~Le~L~L~~c~~~~~~~~l-~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~ 256 (461)
.+ .+ - +..++.|+.|.|.++.. ..+... .+ ..++|+.|.+.++...+. .. ..-..++|++|.+.
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~~ip~~~~l~~l~~L~~L~L~~N~l~g~--ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVETSLQKMKKLGMLECLYNQLEGK--LP-AFGSEIKLASLNLA 361 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-SSCCCHHHHTTCTTCCEEECCSCCCEEE--CC-CCEEEEEESEEECC
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcC-CccCchhhhccCCCCCEEeCcCCcCccc--hh-hhCCCCCCCEEECC
Confidence 33 22 1 34569999999999875 222110 12 257899999987654211 11 12356789999998
Q ss_pred cceecee--eeeCCCC-ceEEEEEeeeecccCCccchhHHHHHhhc--CCCceEEEEecchhhccccchhhhhccccccC
Q 012533 257 DGTLVSY--LVYELHS-LCDARLDIDYSRVRSDPVRADHALQLLKK--LTNLKSLYLSCGTIYALGEAYRHLYDAHQYFL 331 (461)
Q Consensus 257 ~~~~~~~--~l~~~~~-L~~~~i~~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (461)
+.....+ .+..+++ |+.+.+..+.-.. +...+.. +++++.|.++...+. .... ..+
T Consensus 362 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~---------lp~~~~~~~l~~L~~L~Ls~N~l~-------~~~p---~~l 422 (636)
T 4eco_A 362 YNQITEIPANFCGFTEQVENLSFAHNKLKY---------IPNIFDAKSVSVMSAIDFSYNEIG-------SVDG---KNF 422 (636)
T ss_dssp SSEEEECCTTSEEECTTCCEEECCSSCCSS---------CCSCCCTTCSSCEEEEECCSSCTT-------TTTT---CSS
T ss_pred CCccccccHhhhhhcccCcEEEccCCcCcc---------cchhhhhcccCccCEEECcCCcCC-------Ccch---hhh
Confidence 8765432 2455677 8888776653211 0112222 347899999887665 1110 022
Q ss_pred C-------CCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 332 P-------TFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 332 ~-------~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
+ ...+|++|++..+... ..-..+++.+|+|+.|++...
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred cccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence 2 4568888888765433 223355667888998888764
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.20 E-value=6.8e-07 Score=83.35 Aligned_cols=194 Identities=16% Similarity=0.112 Sum_probs=110.5
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEeccc-ccccCCCCcccCcccceEEeceee-cCCc---ccC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLETD-FVFKSPSSGICFPRVKKFHVEIYK-PNMP---DFS 195 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~-~~~~~p~~~~~~~~L~~L~L~~~~-~~~~---lls 195 (461)
.++++|.+... ....+|. .+..+++|++|+|+.. .....|.....+++|++|+|.+.. .... .+.
T Consensus 32 ~~l~~L~l~~n---------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGN---------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeCC---------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 46667666543 1223332 3445777888888721 111123344567788888887774 3322 677
Q ss_pred CCCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceeceee---eeCCCCc
Q 012533 196 ICPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYL---VYELHSL 271 (461)
Q Consensus 196 ~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---l~~~~~L 271 (461)
.++.|++|.+.++.. .....-.+ ..++|+.|.+.++....... ...-..++|++|.+.+....... +..+++|
T Consensus 103 ~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 778888888877654 11111011 14677777777654311000 00113578888888876554332 4567788
Q ss_pred eEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEe
Q 012533 272 CDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR 345 (461)
Q Consensus 272 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 345 (461)
+.+.+..+.-.+. ....+..+++++.|.++...+. .+.. ..+..+.+|++|++..+
T Consensus 180 ~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~-------~~~~---~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 180 DRLLLHQNRVAHV--------HPHAFRDLGRLMTLYLFANNLS-------ALPT---EALAPLRALQYLRLNDN 235 (285)
T ss_dssp CEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCS-------CCCH---HHHTTCTTCCEEECCSS
T ss_pred CEEECCCCccccc--------CHhHccCcccccEeeCCCCcCC-------cCCH---HHcccCcccCEEeccCC
Confidence 8877765421110 1224567889999999987665 1111 03456788999988755
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=6.9e-07 Score=95.89 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=134.8
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC--cccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD--CIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFS 195 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~--~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls 195 (461)
.+++.|.+... . ...+|. .+..+++|+.|.|+. ... .+| ....+++|+.|+|++.. . .+ -+.
T Consensus 548 ~~L~~L~Ls~N-------~--L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~ 615 (876)
T 4ecn_A 548 PKIQIFYMGYN-------N--LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC 615 (876)
T ss_dssp TTCCEEECCSS-------C--CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC
T ss_pred CCccEEEeeCC-------c--CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh
Confidence 47999998764 2 237888 778899999999982 222 455 55789999999999988 6 43 677
Q ss_pred CCCc-cceEEEEeecCCCCCceeE--eecccccEEEEeecccccccCc---eeEEEecCCceEEEEecceeceee---ee
Q 012533 196 ICPV-LEDLSIDYSLNFDWDADIS--ISSQTLKRLNLMIGGPIVFANE---HQATIEAPKLEHLHVNDGTLVSYL---VY 266 (461)
Q Consensus 196 ~cp~-Le~L~L~~c~~~~~~~~l~--i~~~~L~~L~l~~~~~~~~~~~---~~~~i~ap~L~~L~l~~~~~~~~~---l~ 266 (461)
.++. |+.|.|.++.. ..+...- ...++|+.|.+.++...+.... ..-....++|+.|.+.+.....++ +.
T Consensus 616 ~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~ 694 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694 (876)
T ss_dssp EECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH
T ss_pred hccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHc
Confidence 8888 99999999875 2222111 1123489999987654211000 000123458999999876654332 23
Q ss_pred CCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCC--CCCCeeEEEEEE
Q 012533 267 ELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLP--TFSNLSFLEVRI 344 (461)
Q Consensus 267 ~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~ 344 (461)
.+++|+.+.+..+.-..... .........+..+++|+.|.|+.+.+. .+.. .+. .+++|+.|+|..
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~-~~~~~~~~~l~nl~~L~~L~Ls~N~L~-------~lp~----~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPE-NSLKPKDGNYKNTYLLTTIDLRFNKLT-------SLSD----DFRATTLPYLSNMDVSY 762 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCT-TSSSCTTSCCTTGGGCCEEECCSSCCC-------CCCG----GGSTTTCTTCCEEECCS
T ss_pred cCCCCCEEECCCCcCCccCh-HHhccccccccccCCccEEECCCCCCc-------cchH----HhhhccCCCcCEEEeCC
Confidence 67888888876652110000 000000001223458888888877655 2211 232 678888888876
Q ss_pred eccCcchhhHHhhcCCCCceeEEEe
Q 012533 345 REYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 345 ~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
+... .+..-+..+++|+.|+|..
T Consensus 763 N~L~--~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 763 NCFS--SFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp SCCS--SCCCGGGGCTTCCEEECCC
T ss_pred CCCC--ccchhhhcCCCCCEEECCC
Confidence 5332 2444456788888888865
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.20 E-value=8.8e-07 Score=88.14 Aligned_cols=203 Identities=14% Similarity=0.126 Sum_probs=130.6
Q ss_pred CCceEEEEEccCCCCCCCCCccccCC-CcccccCcccEEEecccccccCCC-CcccCcccceEEeceee-cC-Cc-ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELP-DCIYNSETLEILKLETDFVFKSPS-SGICFPRVKKFHVEIYK-PN-MP-DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~-~~-lls~ 196 (461)
.++++|++... ....++ ..+..+.+|++|+|+...-..+|+ ....+++|++|+|.+.. .. .. .+..
T Consensus 88 ~~L~~L~Ls~n---------~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 88 RHLEILQLSRN---------HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp SSCCEEECCSS---------CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCEEECCCC---------cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence 57888887653 122333 334458899999998321112333 34678999999999887 43 22 7889
Q ss_pred CCccceEEEEeecCCCCCceeEe----ecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCC
Q 012533 197 CPVLEDLSIDYSLNFDWDADISI----SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELH 269 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~l~i----~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~ 269 (461)
++.|+.|.|.+|.. +..+.. ..++|+.|.+.++.... ... ....++|++|++++...... .+.+++
T Consensus 159 l~~L~~L~l~~~~~---l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 159 IPSLRRLDLGELKR---LSYISEGAFEGLSNLRYLNLAMCNLRE---IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp CTTCCEEECCCCTT---CCEECTTTTTTCSSCCEEECTTSCCSS---CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred CcccCEeCCCCCCC---cceeCcchhhcccccCeecCCCCcCcc---ccc-cCCCcccCEEECCCCccCccChhhhccCc
Confidence 99999999998765 333322 25789999998765421 111 23567899999998765443 356788
Q ss_pred CceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEe----
Q 012533 270 SLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR---- 345 (461)
Q Consensus 270 ~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---- 345 (461)
+|+.+.+..+.-... ....+..+++|+.|.|+.+.+. .+.. ..+..+.+|+.|+|..+
T Consensus 232 ~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~-------~~~~---~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVI--------ERNAFDNLQSLVEINLAHNNLT-------LLPH---DLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TCCEEECTTCCCCEE--------CTTSSTTCTTCCEEECTTSCCC-------CCCT---TTTSSCTTCCEEECCSSCEEC
T ss_pred cCCEEECCCCceeEE--------ChhhhcCCCCCCEEECCCCCCC-------ccCh---hHhccccCCCEEEcCCCCccC
Confidence 888887765421110 0124567899999999988766 2211 14556789999998754
Q ss_pred ccCcchhhHHhhc
Q 012533 346 EYGWWILPIIFNC 358 (461)
Q Consensus 346 ~~~~~~l~~lL~~ 358 (461)
.....++...++.
T Consensus 294 dC~l~~l~~~~~~ 306 (440)
T 3zyj_A 294 NCDILWLSWWIKD 306 (440)
T ss_dssp SSTTHHHHHHHHT
T ss_pred CCCchHHHHHHHh
Confidence 3445555555543
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.19 E-value=3.8e-08 Score=98.53 Aligned_cols=235 Identities=11% Similarity=0.061 Sum_probs=120.9
Q ss_pred hCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecc-cc-cccCCCCcccCc----ccceEEeceee-cCC--
Q 012533 121 MRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET-DF-VFKSPSSGICFP----RVKKFHVEIYK-PNM-- 191 (461)
Q Consensus 121 ~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~-~~~~p~~~~~~~----~L~~L~L~~~~-~~~-- 191 (461)
.++++.|++..+.-. ......+|..+..+++|++|+|+. .. +.........++ +|++|+|.++. .+.
T Consensus 27 ~~~L~~L~L~~~~l~----~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLT----EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HTTCSEEEEESSCCC----HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred cCCccEEEccCCCCC----HHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 357788877764100 001224555555577788888872 11 100000112233 68888888777 432
Q ss_pred --c--ccCCCCccceEEEEeecCCCCC--ceeE----eecccccEEEEeecccccccCc---eeEEEecCCceEEEEecc
Q 012533 192 --P--DFSICPVLEDLSIDYSLNFDWD--ADIS----ISSQTLKRLNLMIGGPIVFANE---HQATIEAPKLEHLHVNDG 258 (461)
Q Consensus 192 --~--lls~cp~Le~L~L~~c~~~~~~--~~l~----i~~~~L~~L~l~~~~~~~~~~~---~~~~i~ap~L~~L~l~~~ 258 (461)
+ .+..+|.|++|+|.++.. .+. ..+. -..++|++|.+.++.... .+. ....-..|+|++|.+.+.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA-ASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-GGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCH-HHHHHHHHHHhhCCCCCEEECcCC
Confidence 1 677788888888877653 110 0000 012368888887654311 000 001112478888888765
Q ss_pred eeceee---e-----eCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhcccccc
Q 012533 259 TLVSYL---V-----YELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYF 330 (461)
Q Consensus 259 ~~~~~~---l-----~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~ 330 (461)
...... + ...++|+.+.+..+.-. ......+...+..+++++.|.++...+... .+.......
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~----~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~~ 251 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVT----SDNCRDLCGIVASKASLRELALGSNKLGDV-----GMAELCPGL 251 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB----TTHHHHHHHHHHHCTTCCEEECCSSBCHHH-----HHHHHHHHH
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCc----HHHHHHHHHHHHhCCCccEEeccCCcCChH-----HHHHHHHHH
Confidence 433211 1 12457777766554210 011123566667788888888877654410 000000002
Q ss_pred CCCCCCeeEEEEEEeccCcc---hhhHHhhcCCCCceeEEEee
Q 012533 331 LPTFSNLSFLEVRIREYGWW---ILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 331 ~~~~~~L~~L~l~~~~~~~~---~l~~lL~~~P~Le~L~l~~~ 370 (461)
...+.+|++|++..+..... .+...+..+|+|++|++...
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 22456788777776643322 35666677888888877653
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.18 E-value=4.4e-07 Score=94.15 Aligned_cols=211 Identities=16% Similarity=0.174 Sum_probs=111.5
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCcc
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVL 200 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~L 200 (461)
.+++.+.+... ....+| .+..+.+|++|++....-..+|.. .+++|++|++.+.. .+..-+..+|.|
T Consensus 285 ~~L~~L~l~~~---------~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L 352 (606)
T 3vq2_A 285 ANVSAMSLAGV---------SIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSL 352 (606)
T ss_dssp TTCSEEEEESC---------CCCCCC-CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTC
T ss_pred CCCCEEEecCc---------cchhhh-hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchhhccCCCC
Confidence 46667776653 123445 455678889998883222334422 78888888888775 443355678888
Q ss_pred ceEEEEeecCCCCCceeE------eecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee----eeeCCCC
Q 012533 201 EDLSIDYSLNFDWDADIS------ISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY----LVYELHS 270 (461)
Q Consensus 201 e~L~L~~c~~~~~~~~l~------i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~----~l~~~~~ 270 (461)
+.|.+.++.. ..+. ...++|+.|.+.++.... ........++|++|.+.+...... .+..+++
T Consensus 353 ~~L~ls~n~l----~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 353 SYLDLSRNAL----SFSGCCSYSDLGTNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CEEECCSSCE----EEEEECCHHHHCCSCCCEEECCSCSEEE---ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CEEECcCCcc----CCCcchhhhhccCCcccEeECCCCcccc---chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 8888887653 2221 124678888877654211 001112357777777776544322 2345667
Q ss_pred ceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcc
Q 012533 271 LCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWW 350 (461)
Q Consensus 271 L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 350 (461)
|+.+.+..+.-.+ .....+..+++++.|.++...+. . ...+..+..+.+|++|++..+....
T Consensus 426 L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~-------~--~~~~~~~~~l~~L~~L~Ls~n~l~~- 487 (606)
T 3vq2_A 426 LLYLDISYTNTKI--------DFDGIFLGLTSLNTLKMAGNSFK-------D--NTLSNVFANTTNLTFLDLSKCQLEQ- 487 (606)
T ss_dssp CCEEECTTSCCEE--------CCTTTTTTCTTCCEEECTTCEEG-------G--GEECSCCTTCTTCCEEECTTSCCCE-
T ss_pred CCEEECcCCCCCc--------cchhhhcCCCCCCEEECCCCcCC-------C--cchHHhhccCCCCCEEECCCCcCCc-
Confidence 7777665542111 01123455666666666655433 1 0001133344555555554432110
Q ss_pred hhhHHhhcCCCCceeEEEe
Q 012533 351 ILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 351 ~l~~lL~~~P~Le~L~l~~ 369 (461)
.....+..+++|++|+|..
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp ECTTTTTTCTTCCEEECCS
T ss_pred cChhhhcccccCCEEECCC
Confidence 1122334455555555544
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.17 E-value=1.7e-06 Score=86.52 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=78.2
Q ss_pred ccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEee-cccccEEEEeecccccccCceeEEEecCCce
Q 012533 174 ICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISIS-SQTLKRLNLMIGGPIVFANEHQATIEAPKLE 251 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~ 251 (461)
..+++|++|+|.+.. .+ +-+..++.|++|.+.++.. ..+.+. .++|+.|.+..+...+.. . ....++|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l----~~l~l~~l~~L~~L~l~~n~~~~~~---~-~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCARNTL----TEIDVSHNTQLTELDCHLNKKITKL---D-VTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCTTCTTCCEEECTTSCC----SCCCCTTCTTCCEEECTTCSCCCCC---C-CTTCTTCC
T ss_pred CCCCcCCEEECCCCcCCe-ecCCCCCcCCEEECCCCcc----ceeccccCCcCCEEECCCCCccccc---c-cccCCcCC
Confidence 345555555555554 32 1245555666666555543 112222 355666665544221100 0 11346666
Q ss_pred EEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccC
Q 012533 252 HLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFL 331 (461)
Q Consensus 252 ~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (461)
+|.+.+.......+..+++|+.+.+..+.-.+ + -+..+++++.|.++...+. .+ .+
T Consensus 174 ~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~---------~--~l~~l~~L~~L~Ls~N~l~-------~i------p~ 229 (457)
T 3bz5_A 174 TLDCSFNKITELDVSQNKLLNRLNCDTNNITK---------L--DLNQNIQLTFLDCSSNKLT-------EI------DV 229 (457)
T ss_dssp EEECCSSCCCCCCCTTCTTCCEEECCSSCCSC---------C--CCTTCTTCSEEECCSSCCS-------CC------CC
T ss_pred EEECCCCccceeccccCCCCCEEECcCCcCCe---------e--ccccCCCCCEEECcCCccc-------cc------Cc
Confidence 66666655555555566666666655432110 0 1455677777777766554 11 23
Q ss_pred CCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEE
Q 012533 332 PTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLI 368 (461)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~ 368 (461)
..+.+|+.|++..+.... +. +..+++|+.|.+.
T Consensus 230 ~~l~~L~~L~l~~N~l~~--~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTE--LD--VSTLSKLTTLHCI 262 (457)
T ss_dssp TTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECT
T ss_pred cccCCCCEEEeeCCcCCC--cC--HHHCCCCCEEecc
Confidence 345677777776543211 11 3456666666543
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.17 E-value=1.7e-06 Score=80.22 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=84.6
Q ss_pred ccCcccceEEeceee-cCC-c-ccCCCCccceEEEEeecCCCCCceeE---e-ecccccEEEEeecccccccCceeEEEe
Q 012533 174 ICFPRVKKFHVEIYK-PNM-P-DFSICPVLEDLSIDYSLNFDWDADIS---I-SSQTLKRLNLMIGGPIVFANEHQATIE 246 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~-~-lls~cp~Le~L~L~~c~~~~~~~~l~---i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ 246 (461)
..+++|++|+|.+.. .+- . .+..++.|+.|.|.++.. ..+. + ..++|+.|.+.++....... ...-.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 122 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGH 122 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTSCCCCSTT--CCCTT
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc----CccChhhhcCCccccEEECCCCCccccCc--hhccc
Confidence 455666666666555 221 1 455566666666655532 1111 1 13456666655433211000 00113
Q ss_pred cCCceEEEEecceece----eeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCce-EEEEecchhhccccchh
Q 012533 247 APKLEHLHVNDGTLVS----YLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLK-SLYLSCGTIYALGEAYR 321 (461)
Q Consensus 247 ap~L~~L~l~~~~~~~----~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~~~~ 321 (461)
.++|++|.+.+..... ..+.++++|+.+.+..+.-.+. ......-+..++.+. .|.++...+.
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~l~l~L~ls~n~l~------- 190 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDLSLNPMN------- 190 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-----CGGGGHHHHTCTTCCEEEECCSSCCC-------
T ss_pred CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-----CHHHhhhhhhccccceeeecCCCccc-------
Confidence 4666666666544322 1234556666666554321000 001112233344444 6777766554
Q ss_pred hhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeeecCCC
Q 012533 322 HLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPE 375 (461)
Q Consensus 322 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~~~~~ 375 (461)
.+.. ......+|++|++..+... .....++..+|+|++|++......|.
T Consensus 191 ~~~~----~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 191 FIQP----GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp EECT----TSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccCc----cccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccccc
Confidence 1111 1112237888887755321 11224567788999888877554443
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.15 E-value=7.1e-07 Score=83.55 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=8.8
Q ss_pred hcCCCceEEEEecchhh
Q 012533 298 KKLTNLKSLYLSCGTIY 314 (461)
Q Consensus 298 ~~l~~l~~L~l~~~~~~ 314 (461)
..+++++.|.|+...+.
T Consensus 145 ~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLT 161 (290)
T ss_dssp TTCTTCCEEECTTSCCS
T ss_pred ccccCCCEEECCCCcCC
Confidence 34555555555554443
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.15 E-value=5.6e-06 Score=89.36 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=36.3
Q ss_pred ccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEee-cccccE
Q 012533 152 NSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISIS-SQTLKR 226 (461)
Q Consensus 152 ~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~ 226 (461)
.+++|+.|+|+. ......|....++++|++|+|++.. .+.. .+..+|.|+.|.+.++.. ..+..-.+. .++|+.
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC-CCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC-CccChhhhcCCCCCCE
Confidence 355566666551 1111112223455566666665555 3321 555556666666655532 111111111 355666
Q ss_pred EEEeec
Q 012533 227 LNLMIG 232 (461)
Q Consensus 227 L~l~~~ 232 (461)
|.+.++
T Consensus 367 L~Ls~N 372 (844)
T 3j0a_A 367 LDLRDN 372 (844)
T ss_dssp EEEETC
T ss_pred EECCCC
Confidence 666544
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.14 E-value=5.4e-07 Score=94.81 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=37.0
Q ss_pred CCceEEEEEccCCCCCCCCCccccC-CCcccccCcccEEEeccc-cc-ccCCCC---cccCcccceEEeceee-cCCc--
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVEL-PDCIYNSETLEILKLETD-FV-FKSPSS---GICFPRVKKFHVEIYK-PNMP-- 192 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~-~~-~~~p~~---~~~~~~L~~L~L~~~~-~~~~-- 192 (461)
.++++|.+.... ...+ |..+..+++|++|+|+.. .. ..++.. ....++|+.|+|.+.. .+-.
T Consensus 329 ~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 329 KCLEHLNMEDND---------IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp TTCCEEECCSCC---------BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred CCCCEEECCCCc---------cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 578888876531 1122 223344677777777621 00 001110 0112456666665555 3221
Q ss_pred ccCCCCccceEEEEeec
Q 012533 193 DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 193 lls~cp~Le~L~L~~c~ 209 (461)
.+..++.|+.|.|.++.
T Consensus 400 ~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred hhhCCCCCCEEeCCCCc
Confidence 45555666666665543
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.12 E-value=6.5e-07 Score=90.32 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=14.5
Q ss_pred cCcccceEEeceee-cCCcccCCCCccceEEEEee
Q 012533 175 CFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYS 208 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c 208 (461)
.+++|++|+|++.. .+..-+..+|.|+.|.|.++
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSS
T ss_pred CCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCC
Confidence 44444444444443 22112444444444444444
No 61
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.11 E-value=4.4e-08 Score=95.77 Aligned_cols=216 Identities=16% Similarity=0.080 Sum_probs=122.9
Q ss_pred cccCCCcccccCcccEEEeccc-ccc----cCCCCcccCcccceEEeceee-c---CCc---------ccCCCCccceEE
Q 012533 143 PVELPDCIYNSETLEILKLETD-FVF----KSPSSGICFPRVKKFHVEIYK-P---NMP---------DFSICPVLEDLS 204 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~-~~~----~~p~~~~~~~~L~~L~L~~~~-~---~~~---------lls~cp~Le~L~ 204 (461)
...++..+..+++|++|+|+.. ... .++.....+++|++|+|+++. . +.. .+..++.|++|.
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3455656666888999998821 110 011122578999999999875 2 221 357899999999
Q ss_pred EEeecCCCCCc--ee--E-eecccccEEEEeecccccccCceeEE---Eec---------CCceEEEEecceece-----
Q 012533 205 IDYSLNFDWDA--DI--S-ISSQTLKRLNLMIGGPIVFANEHQAT---IEA---------PKLEHLHVNDGTLVS----- 262 (461)
Q Consensus 205 L~~c~~~~~~~--~l--~-i~~~~L~~L~l~~~~~~~~~~~~~~~---i~a---------p~L~~L~l~~~~~~~----- 262 (461)
|.++.. .... .+ . -.+++|++|.+.++.... .+...+. ... |+|++|.+.+.....
T Consensus 101 Ls~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 101 LSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGP-QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp CCSCCC-CTTTHHHHHHHHHHCTTCCEEECCSSCCHH-HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCCCcC-CHHHHHHHHHHHHhCCCCCEEECcCCCCCH-HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 999865 2211 11 1 136889999998765311 0000000 011 899999998765431
Q ss_pred --eeeeCCCCceEEEEEeeeecccCCccchhHHHH-HhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeE
Q 012533 263 --YLVYELHSLCDARLDIDYSRVRSDPVRADHALQ-LLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSF 339 (461)
Q Consensus 263 --~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 339 (461)
..+..+++|+.+.+..+.-. ......+.. .+..+++|+.|.|+.+.+...+. ..+.. .+..+++|++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~----~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~--~~l~~----~l~~~~~L~~ 248 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIR----PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS--SALAI----ALKSWPNLRE 248 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCC----HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH--HHHHH----HGGGCTTCCE
T ss_pred HHHHHHhCCCcCEEECcCCCCC----HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH--HHHHH----HHccCCCcCE
Confidence 12345677887777654210 000112333 56678888888888766531000 01111 3455677888
Q ss_pred EEEEEeccCcc---hhhHHhhc--CCCCceeEEEee
Q 012533 340 LEVRIREYGWW---ILPIIFNC--SPNLESFVLIMD 370 (461)
Q Consensus 340 L~l~~~~~~~~---~l~~lL~~--~P~Le~L~l~~~ 370 (461)
|+|..+..... .+...++. +|+|+.|+|...
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 88776644322 34455544 788888888663
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.11 E-value=9e-07 Score=92.41 Aligned_cols=221 Identities=11% Similarity=0.112 Sum_probs=127.7
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC--cccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc-ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD--CIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP-DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~--~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~ 196 (461)
.++++|.+... . ...+|. .+..+++|++|+|+. ...-.+| ....+++|++|+|.+.. ..-. -+..
T Consensus 305 ~~L~~L~L~~n-------~--l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~ 374 (636)
T 4eco_A 305 EKIQIIYIGYN-------N--LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCG 374 (636)
T ss_dssp GTCCEEECCSS-------C--CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEE
T ss_pred CCCCEEECCCC-------c--CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhh
Confidence 68999998764 2 237887 777889999999982 2221344 55678899999998887 5211 5777
Q ss_pred CCc-cceEEEEeecCCCCCceeEee---cccccEEEEeecccccccCceeE------EEecCCceEEEEecceeceee--
Q 012533 197 CPV-LEDLSIDYSLNFDWDADISIS---SQTLKRLNLMIGGPIVFANEHQA------TIEAPKLEHLHVNDGTLVSYL-- 264 (461)
Q Consensus 197 cp~-Le~L~L~~c~~~~~~~~l~i~---~~~L~~L~l~~~~~~~~~~~~~~------~i~ap~L~~L~l~~~~~~~~~-- 264 (461)
++. |+.|.+.++.. ..+.. .+. .++|+.|.+.++...+. .+..+ .+..++|++|.+.+.....+.
T Consensus 375 l~~~L~~L~Ls~N~l-~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 375 FTEQVENLSFAHNKL-KYIPN-IFDAKSVSVMSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451 (636)
T ss_dssp ECTTCCEEECCSSCC-SSCCS-CCCTTCSSCEEEEECCSSCTTTT-TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred hcccCcEEEccCCcC-cccch-hhhhcccCccCEEECcCCcCCCc-chhhhcccccccccCCCCCEEECcCCccCcCCHH
Confidence 788 99999988765 22221 111 23688888876644211 00111 124568888888876554332
Q ss_pred -eeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccC--CCCCCeeEEE
Q 012533 265 -VYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFL--PTFSNLSFLE 341 (461)
Q Consensus 265 -l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~ 341 (461)
+..+++|+.+.+..+.-.... ..........+..+++++.|.|+...+. .+.. .+ ..+++|++|+
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~lp~----~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLTEIP-KNSLKDENENFKNTYLLTSIDLRFNKLT-------KLSD----DFRATTLPYLVGID 519 (636)
T ss_dssp HHHTTCCCSEEECCSSCCSBCC-SSSSEETTEECTTGGGCCEEECCSSCCC-------BCCG----GGSTTTCTTCCEEE
T ss_pred HHccCCCCCEEECCCCCCCCcC-HHHhccccccccccCCccEEECcCCcCC-------ccCh----hhhhccCCCcCEEE
Confidence 234677887777654221100 0000000001122337888888776555 1211 22 2567788777
Q ss_pred EEEeccCcchhhHHhhcCCCCceeEEEe
Q 012533 342 VRIREYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 342 l~~~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
|..+... .+..-+..+++|+.|+|..
T Consensus 520 Ls~N~l~--~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 520 LSYNSFS--KFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CCSSCCS--SCCCGGGGCSSCCEEECCS
T ss_pred CCCCCCC--CcChhhhcCCCCCEEECCC
Confidence 7755322 2444455678888888754
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.10 E-value=1.1e-05 Score=81.76 Aligned_cols=36 Identities=6% Similarity=0.073 Sum_probs=18.5
Q ss_pred cceEEEEEEeCCCCchHHHHHHHhcCcCCceEEEEe
Q 012533 394 FNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 394 ~~Lk~v~i~~g~~~e~~l~~~ll~~a~~Le~~~i~~ 429 (461)
.+|+.+.+....-..+.-+...+.+.+.|+.+.+..
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 456666665222222222333456667777776654
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.10 E-value=3.7e-07 Score=87.20 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=33.4
Q ss_pred hhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 297 LKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 297 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
+..+++++.|.++...+. .+.. ..+..+++|++|++..+... .+..-+..+|+|+.|++...
T Consensus 213 l~~l~~L~~L~L~~N~l~-------~~~~---~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIR-------MIEN---GSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp STTCTTCSCCBCCSSCCC-------CCCT---TGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCC-------cCCh---hHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCC
Confidence 445666777777665544 1110 02344566777766654322 23333566777777777653
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.10 E-value=3.7e-06 Score=80.05 Aligned_cols=214 Identities=11% Similarity=0.067 Sum_probs=125.9
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICP 198 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp 198 (461)
.++++|.+... .. ....|..+..+++|++|+|+...-..+|.. .+++|++|++.+.. .+-. .+..++
T Consensus 76 ~~L~~L~L~~n-------~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 76 KNLHTLILINN-------KI-SKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLN 145 (330)
T ss_dssp TTCCEEECCSS-------CC-CCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred CCCCEEECCCC-------cC-CeeCHHHhcCCCCCCEEECCCCcCCccChh--hcccccEEECCCCcccccCHhHhcCCc
Confidence 56777777653 11 122255556678888888872211122322 24788888888877 4332 678889
Q ss_pred ccceEEEEeecCCCCCcee--Ee-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCCCce
Q 012533 199 VLEDLSIDYSLNFDWDADI--SI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELHSLC 272 (461)
Q Consensus 199 ~Le~L~L~~c~~~~~~~~l--~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~~L~ 272 (461)
.|+.|.+.++.. ...... .+ ..++|+.|.+.++....... . ..++|++|.+.+...... .+..+++|+
T Consensus 146 ~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 146 QMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNITTIPQ--G---LPPSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp TCCEEECCSSCC-CGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--S---CCTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred cccEEECCCCcC-CccCcChhhccCCCCcCEEECCCCccccCCc--c---ccccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 999999988754 110010 11 25788888887665421111 1 127899999987655433 356788888
Q ss_pred EEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccC---c
Q 012533 273 DARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYG---W 349 (461)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~ 349 (461)
.+.+..+.-.+. ....+..+++++.|.++...+. .+.. .+..+.+|++|++..+... .
T Consensus 220 ~L~Ls~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~-------~lp~----~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 220 KLGLSFNSISAV--------DNGSLANTPHLRELHLNNNKLV-------KVPG----GLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp EEECCSSCCCEE--------CTTTGGGSTTCCEEECCSSCCS-------SCCT----TTTTCSSCCEEECCSSCCCCCCT
T ss_pred EEECCCCcCcee--------ChhhccCCCCCCEEECCCCcCc-------cCCh----hhccCCCcCEEECCCCcCCccCh
Confidence 888876522110 0124567889999999987665 1211 3456688888888765321 1
Q ss_pred chhh--HHhhcCCCCceeEEEee
Q 012533 350 WILP--IIFNCSPNLESFVLIMD 370 (461)
Q Consensus 350 ~~l~--~lL~~~P~Le~L~l~~~ 370 (461)
..+. ......+.|+.|++...
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSS
T ss_pred hhcCCcccccccccccceEeecC
Confidence 1111 11123577888877653
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.09 E-value=4.9e-06 Score=75.29 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=27.0
Q ss_pred cccEEEecccccccCCC-CcccCcccceEEeceee-cCCc---ccCCCCccceEEEEeec
Q 012533 155 TLEILKLETDFVFKSPS-SGICFPRVKKFHVEIYK-PNMP---DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 155 ~L~~L~L~~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~~~---lls~cp~Le~L~L~~c~ 209 (461)
+|++|+|+...-..+|+ ....+++|++|+|.+.. ...+ .+..++.|++|.+.+|.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 56666665211111122 23456666666666553 2221 45566666666666643
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.08 E-value=5.4e-06 Score=85.82 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=7.2
Q ss_pred cCcccceEEeceee
Q 012533 175 CFPRVKKFHVEIYK 188 (461)
Q Consensus 175 ~~~~L~~L~L~~~~ 188 (461)
.+++|++|+|++..
T Consensus 99 ~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 99 LPPGLLELSIFSNP 112 (622)
T ss_dssp CCTTCCEEEECSCC
T ss_pred CCCCCCEEECcCCc
Confidence 44555555555444
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.08 E-value=2.4e-06 Score=87.44 Aligned_cols=206 Identities=15% Similarity=0.129 Sum_probs=124.8
Q ss_pred cccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeE
Q 012533 143 PVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADIS 218 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~ 218 (461)
...+|..++ ++|++|+|+. ......|.....+++|++|+|++.. .+-. .++.++.|++|+|.++.. .....-.
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~ 93 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSW 93 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CSCCHHH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc-CccCHHH
Confidence 456776554 7899999993 2222223345789999999999988 4422 688999999999999865 2221111
Q ss_pred e-ecccccEEEEeecccccccCceeEEEecCCceEEEEecce-ecee---eeeCCCCceEEEEEeeeecccCCccchhHH
Q 012533 219 I-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGT-LVSY---LVYELHSLCDARLDIDYSRVRSDPVRADHA 293 (461)
Q Consensus 219 i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~-~~~~---~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~ 293 (461)
+ ..++|+.|.+.++..... +.....-..++|++|.+.+.. .... .+.++++|+.+.+..+.-.+ ..
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~ 164 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--------YQ 164 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--------EC
T ss_pred hccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc--------cC
Confidence 2 257899999987643210 111112346789999988754 2222 34567778877777642211 01
Q ss_pred HHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcc--hhhHHhhcCCCCceeEEEee
Q 012533 294 LQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWW--ILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 294 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~l~~lL~~~P~Le~L~l~~~ 370 (461)
...+..+++++.|.++..... .+... ....+.+|++|++..+..... .-..+...+++|+.|.+...
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~-------~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESA-------FLLEI---FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBST-------THHHH---HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred hhhhhccccCceEecccCccc-------ccchh---hHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 224566778888888766544 22111 122467888888876532111 11234456788888888764
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.07 E-value=2.4e-06 Score=85.32 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=136.2
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCcc
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVL 200 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~L 200 (461)
.++++|++... . ...+| .+..+++|++|+|+...-..+| ...+++|++|+|++.. .+- -+..++.|
T Consensus 42 ~~L~~L~Ls~n-------~--l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L 108 (457)
T 3bz5_A 42 ATLTSLDCHNS-------S--ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKL 108 (457)
T ss_dssp TTCCEEECCSS-------C--CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTC
T ss_pred CCCCEEEccCC-------C--cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-ecCCCCcC
Confidence 67888888664 1 22345 4677899999999822111122 4678999999999888 443 37789999
Q ss_pred ceEEEEeecCCCCCceeEee-cccccEEEEeecccccccCceeEEEecCCceEEEEecc-eeceeeeeCCCCceEEEEEe
Q 012533 201 EDLSIDYSLNFDWDADISIS-SQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDG-TLVSYLVYELHSLCDARLDI 278 (461)
Q Consensus 201 e~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~-~~~~~~l~~~~~L~~~~i~~ 278 (461)
++|.+.++.. .. +.+. .++|+.|.+..+... +.. .-..++|++|.+.+. ......+..+++|+.+.+..
T Consensus 109 ~~L~L~~N~l-~~---l~~~~l~~L~~L~l~~N~l~---~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKL-TK---LDVSQNPLLTYLNCARNTLT---EID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCC-SC---CCCTTCTTCCEEECTTSCCS---CCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred CEEECCCCcC-Ce---ecCCCCCcCCEEECCCCccc---eec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence 9999999864 22 3343 578999999876542 111 125688999999876 33445567788899888776
Q ss_pred eeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhc
Q 012533 279 DYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNC 358 (461)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~ 358 (461)
+.-.+ +. +..+++++.|.++...+. .+ .+..+.+|++|++..+... .+. +..
T Consensus 180 n~l~~---------l~--l~~l~~L~~L~l~~N~l~-------~~------~l~~l~~L~~L~Ls~N~l~--~ip--~~~ 231 (457)
T 3bz5_A 180 NKITE---------LD--VSQNKLLNRLNCDTNNIT-------KL------DLNQNIQLTFLDCSSNKLT--EID--VTP 231 (457)
T ss_dssp SCCCC---------CC--CTTCTTCCEEECCSSCCS-------CC------CCTTCTTCSEEECCSSCCS--CCC--CTT
T ss_pred Cccce---------ec--cccCCCCCEEECcCCcCC-------ee------ccccCCCCCEEECcCCccc--ccC--ccc
Confidence 52211 11 567889999999887665 11 3456788999988866432 233 678
Q ss_pred CCCCceeEEEeee
Q 012533 359 SPNLESFVLIMDV 371 (461)
Q Consensus 359 ~P~Le~L~l~~~~ 371 (461)
+|+|+.|++....
T Consensus 232 l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 232 LTQLTYFDCSVNP 244 (457)
T ss_dssp CTTCSEEECCSSC
T ss_pred cCCCCEEEeeCCc
Confidence 9999999998753
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.06 E-value=1.4e-06 Score=83.07 Aligned_cols=213 Identities=11% Similarity=0.061 Sum_probs=113.3
Q ss_pred CCceEEEEEccCCCCCCCCCccccC-CCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVEL-PDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSIC 197 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~c 197 (461)
.++++|.+... ....+ |..+..+++|++|+|+...-..+|+.. +++|++|+|.+.. .+-. .+..+
T Consensus 78 ~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l 146 (332)
T 2ft3_A 78 QHLYALVLVNN---------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGL 146 (332)
T ss_dssp TTCCEEECCSS---------CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC--CTTCCEEECCSSCCCCCCSGGGSSC
T ss_pred CCCcEEECCCC---------ccCccCHhHhhCcCCCCEEECCCCcCCccCccc--cccCCEEECCCCccCccCHhHhCCC
Confidence 46777777543 11222 444555788888888722111233322 3788888888777 4322 67888
Q ss_pred CccceEEEEeecCCCC--CceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceecee---eeeCCCCce
Q 012533 198 PVLEDLSIDYSLNFDW--DADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY---LVYELHSLC 272 (461)
Q Consensus 198 p~Le~L~L~~c~~~~~--~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~l~~~~~L~ 272 (461)
+.|+.|.+.++.. .. ...-.+...+|+.|.+.++....... . ..++|++|.+.+...... .+..+++|+
T Consensus 147 ~~L~~L~l~~n~l-~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~--~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 147 RNMNCIEMGGNPL-ENSGFEPGAFDGLKLNYLRISEAKLTGIPK--D---LPETLNELHLDHNKIQAIELEDLLRYSKLY 220 (332)
T ss_dssp SSCCEEECCSCCC-BGGGSCTTSSCSCCCSCCBCCSSBCSSCCS--S---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred ccCCEEECCCCcc-ccCCCCcccccCCccCEEECcCCCCCccCc--c---ccCCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 8888888887653 10 00001111267777776554311100 0 126788887776554433 245567777
Q ss_pred EEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCc---
Q 012533 273 DARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGW--- 349 (461)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--- 349 (461)
.+.+..+.-.+. ....+..+++++.|.++...+. .+.. .+..+++|++|++..+....
T Consensus 221 ~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l~-------~lp~----~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 221 RLGLGHNQIRMI--------ENGSLSFLPTLRELHLDNNKLS-------RVPA----GLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp CCBCCSSCCCCC--------CTTGGGGCTTCCEEECCSSCCC-------BCCT----TGGGCTTCCEEECCSSCCCBCCT
T ss_pred EEECCCCcCCcC--------ChhHhhCCCCCCEEECCCCcCe-------ecCh----hhhcCccCCEEECCCCCCCccCh
Confidence 766655421110 0123567778888888876554 1111 34456777777777553211
Q ss_pred chhhH--HhhcCCCCceeEEEee
Q 012533 350 WILPI--IFNCSPNLESFVLIMD 370 (461)
Q Consensus 350 ~~l~~--lL~~~P~Le~L~l~~~ 370 (461)
..+.. +....+.|+.|.+...
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSS
T ss_pred hHccccccccccccccceEeecC
Confidence 11111 1112566777777653
No 71
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=1.1e-06 Score=84.73 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=49.1
Q ss_pred ccCcccceEEeceee-c---------CCc--ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCce
Q 012533 174 ICFPRVKKFHVEIYK-P---------NMP--DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEH 241 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~---------~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~ 241 (461)
..|++|+.|.+..+. . +++ ++..+|.|++|.|.++.+ .....+..++|++|.+..+.. ......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~---l~l~~~~~~~L~~L~L~~~~l-~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN---LSIGKKPRPNLKSLEIISGGL-PDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT---CBCCSCBCTTCSEEEEECSBC-CHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC---ceeccccCCCCcEEEEecCCC-ChHHHH
Confidence 457777777776543 1 123 788999999999998854 221124478899999975542 111111
Q ss_pred eEE-EecCCceEEEEe
Q 012533 242 QAT-IEAPKLEHLHVN 256 (461)
Q Consensus 242 ~~~-i~ap~L~~L~l~ 256 (461)
.+. ...|+|++|+++
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 111 146888888875
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.04 E-value=1.6e-06 Score=91.13 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=33.0
Q ss_pred hhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhh-cCCCCceeEEEeeecCCC
Q 012533 297 LKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFN-CSPNLESFVLIMDVNGPE 375 (461)
Q Consensus 297 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~-~~P~Le~L~l~~~~~~~~ 375 (461)
+.++++++.|.++...+. .+.. ..+..+.+|+.|++..+...... ...+. .+++|+.|++......|+
T Consensus 556 ~~~l~~L~~L~Ls~N~l~-------~l~~---~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLN-------TLPA---SVFNNQVSLKSLNLQKNLITSVE-KKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTTCTTCCEEECCSSCCC-------CCCT---TTTTTCTTCCEEECTTSCCCBCC-HHHHHHHHTTCSEEECTTCCCCBC
T ss_pred cccccCcceeECCCCCCC-------cCCH---hHhCCCCCCCEEECCCCcCCccC-hhHhcccccccCEEEccCCCcccC
Confidence 445566666666555443 1111 02334556666666544221111 12222 567777777766544444
Q ss_pred c
Q 012533 376 Y 376 (461)
Q Consensus 376 ~ 376 (461)
|
T Consensus 625 c 625 (680)
T 1ziw_A 625 C 625 (680)
T ss_dssp C
T ss_pred C
Confidence 3
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.02 E-value=1.3e-06 Score=80.84 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=48.6
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICP 198 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp 198 (461)
..+++|.+.... ...++ .+..+++|++|+|+...-.. ++....+++|++|+|.+.. .+-. .+..++
T Consensus 41 ~~L~~L~l~~~~---------i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 41 NSIDQIIANNSD---------IKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp TTCCEEECTTSC---------CCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cceeeeeeCCCC---------ccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 577777775531 12222 35567888888887211111 1233677888888888877 4432 677888
Q ss_pred ccceEEEEeecC
Q 012533 199 VLEDLSIDYSLN 210 (461)
Q Consensus 199 ~Le~L~L~~c~~ 210 (461)
.|++|.+.++..
T Consensus 110 ~L~~L~L~~n~l 121 (272)
T 3rfs_A 110 NLKELVLVENQL 121 (272)
T ss_dssp TCCEEECTTSCC
T ss_pred CCCEEECCCCcC
Confidence 888888887754
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.00 E-value=9.4e-06 Score=84.02 Aligned_cols=199 Identities=17% Similarity=0.050 Sum_probs=96.6
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCcc
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVL 200 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~L 200 (461)
.+++.|++... ....+|. ..++|++|+|+...-..+|. .+++|++|+|.+.. .. + -...++|
T Consensus 81 ~~L~~L~Ls~N---------~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-l-p~~l~~L 143 (622)
T 3g06_A 81 PELRTLEVSGN---------QLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-L-PVLPPGL 143 (622)
T ss_dssp TTCCEEEECSC---------CCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-C-CCCCTTC
T ss_pred CCCCEEEcCCC---------cCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-C-CCCCCCC
Confidence 46777777653 1234554 45778888877322112232 56777777777665 32 1 1123667
Q ss_pred ceEEEEeecCCCCCceeEeecccccEEEEeeccccccc--------------CceeEEEecCCceEEEEecceeceeeee
Q 012533 201 EDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFA--------------NEHQATIEAPKLEHLHVNDGTLVSYLVY 266 (461)
Q Consensus 201 e~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~--------------~~~~~~i~ap~L~~L~l~~~~~~~~~l~ 266 (461)
+.|.|.+|.. .. +.-..++|+.|.+.++...... ....+.-..++|+.|.+.+.....+. .
T Consensus 144 ~~L~Ls~N~l-~~---l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~-~ 218 (622)
T 3g06_A 144 QELSVSDNQL-AS---LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP-A 218 (622)
T ss_dssp CEEECCSSCC-SC---CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-C
T ss_pred CEEECcCCcC-CC---cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccC-C
Confidence 7777766643 11 1112234444444433221000 00001011244444444443322211 1
Q ss_pred CCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCC-CCCCeeEEEEEEe
Q 012533 267 ELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLP-TFSNLSFLEVRIR 345 (461)
Q Consensus 267 ~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~ 345 (461)
.+++|+.+.+..+.- ..+...+++++.|.|+.+.+. .+| .+.+|++|++..+
T Consensus 219 ~~~~L~~L~Ls~N~L------------~~lp~~l~~L~~L~Ls~N~L~---------------~lp~~~~~L~~L~Ls~N 271 (622)
T 3g06_A 219 LPSGLKELIVSGNRL------------TSLPVLPSELKELMVSGNRLT---------------SLPMLPSGLLSLSVYRN 271 (622)
T ss_dssp CCTTCCEEECCSSCC------------SCCCCCCTTCCEEECCSSCCS---------------CCCCCCTTCCEEECCSS
T ss_pred CCCCCCEEEccCCcc------------CcCCCCCCcCcEEECCCCCCC---------------cCCcccccCcEEeCCCC
Confidence 234455554443311 111134566777777665444 121 4567887777655
Q ss_pred ccCcchhhHHhhcCCCCceeEEEeee
Q 012533 346 EYGWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 346 ~~~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
... .+..-+..+|+|+.|+|....
T Consensus 272 ~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 272 QLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred CCC--cCCHHHhhccccCEEEecCCC
Confidence 322 344556778888888887643
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.96 E-value=4.3e-05 Score=77.51 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=37.9
Q ss_pred hcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEecc-CcchhhHHhhcCCCCceeEEEee
Q 012533 298 KKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREY-GWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 298 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
..+++++.|.++...+. ... +..+..+.+|+.|++..+.. ....+...+..+++|++|++...
T Consensus 321 ~~l~~L~~L~Ls~n~l~-------~~~---~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLT-------DTV---FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SSCCCCCEEECCSSCCC-------TTT---TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred hhCCcccEEEeECCccC-------hhh---hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 45667777777766544 100 11345567788777765543 23345566777788888877653
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.95 E-value=1.6e-07 Score=93.84 Aligned_cols=234 Identities=15% Similarity=0.057 Sum_probs=136.0
Q ss_pred CceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEeccc-cc-cc---CCC-CcccCcccceEEeceee-cCCc---
Q 012533 123 NVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETD-FV-FK---SPS-SGICFPRVKKFHVEIYK-PNMP--- 192 (461)
Q Consensus 123 ~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~~-~~---~p~-~~~~~~~L~~L~L~~~~-~~~~--- 192 (461)
++++|++..+.- ...+...+|..+..+++|++|+|+.. .. .. +.. .....++|++|+|.++. .+..
T Consensus 86 ~L~~L~L~~n~i----~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 86 KIQKLSLQNCCL----TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp CCCEEECTTSCC----BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred ceeEEEccCCCC----CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 588888866410 00012345666677889999999821 11 00 000 01235679999999988 5432
Q ss_pred ---ccCCCCccceEEEEeecCCCCCceeEe------ecccccEEEEeeccccccc--CceeEEEecCCceEEEEecceec
Q 012533 193 ---DFSICPVLEDLSIDYSLNFDWDADISI------SSQTLKRLNLMIGGPIVFA--NEHQATIEAPKLEHLHVNDGTLV 261 (461)
Q Consensus 193 ---lls~cp~Le~L~L~~c~~~~~~~~l~i------~~~~L~~L~l~~~~~~~~~--~~~~~~i~ap~L~~L~l~~~~~~ 261 (461)
.+..||.|++|.+.++.. .+.....+ ..++|++|.+.++...... ......-..++|++|.+.+....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHhhCCCCCEEECcCCCc-chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 677789999999998763 11111111 1348999999876541100 00111124689999999876543
Q ss_pred ee--------eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCC
Q 012533 262 SY--------LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPT 333 (461)
Q Consensus 262 ~~--------~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (461)
.. ....+++|+.+.+..+.-. ......+...+..+++++.|.++...+...+ ...+... ....
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~----~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~---l~~~ 311 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGIT----AKGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCET---LLEP 311 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCC----HHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHH---HTST
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCC----HHHHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHH---hccC
Confidence 21 1124788888887665211 0111235667778999999999887654100 0001110 1122
Q ss_pred CCCeeEEEEEEeccC---cchhhHHhhcCCCCceeEEEee
Q 012533 334 FSNLSFLEVRIREYG---WWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 334 ~~~L~~L~l~~~~~~---~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
.++|++|++..+... ...+...+..+|+|++|+|...
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 358888888876432 3346777888899999988764
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.94 E-value=4.2e-06 Score=78.98 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=57.6
Q ss_pred cceEEEEeccCCCCcchHHHHHHHHHhCCceEEEEEccCCCCCCCCCccccCCCcc--cccCcccEEEecc-cccccCC-
Q 012533 95 ISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCI--YNSETLEILKLET-DFVFKSP- 170 (461)
Q Consensus 95 i~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~-~~~~~~p- 170 (461)
++.+.+.... .....+..........++++|.+.... . ....|..+ ....+|++|+|+. ......+
T Consensus 66 l~~l~l~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~n~-------l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 66 VRRLTVGAAQ--VPAQLLVGALRVLAYSRLKELTLEDLK-------I-TGTMPPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp CCEEEECSCC--CBHHHHHHHHHHHHHSCCCEEEEESCC-------C-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred eeEEEEeCCc--CCHHHHHHHHHhcccCceeEEEeeCCE-------e-ccchhhhhhhccCCCCCEEEeecccccchhhh
Confidence 5555554321 223344555555555678888887641 1 22334333 4567777777772 1110001
Q ss_pred ---CCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeec
Q 012533 171 ---SSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 171 ---~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~ 209 (461)
.....+++|++|+|.+.. .+.. .++.++.|++|.|.++.
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 011247777777777776 4432 66777777777777765
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.93 E-value=0.00019 Score=73.54 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=44.2
Q ss_pred CCceEEEEEccCCCCCCCCCccccC-CCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cC-Cc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVEL-PDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PN-MP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~-~~--lls~ 196 (461)
.++++|.+... ....+ |..+..+.+|++|+|+...-..+|.. .+++|++|+|++.. .+ .. .+..
T Consensus 76 ~~L~~L~Ls~N---------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 76 SELRVLRLSHN---------RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp TTCCEEECCSC---------CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred CCccEEECCCC---------CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcc
Confidence 46777776543 12223 33344567777777772111123433 67777777777776 43 22 5667
Q ss_pred CCccceEEEEeec
Q 012533 197 CPVLEDLSIDYSL 209 (461)
Q Consensus 197 cp~Le~L~L~~c~ 209 (461)
++.|++|.+.++.
T Consensus 145 l~~L~~L~L~~n~ 157 (562)
T 3a79_B 145 LTKLTFLGLSAAK 157 (562)
T ss_dssp CTTCCEEEEECSB
T ss_pred cCcccEEecCCCc
Confidence 7777777777754
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.93 E-value=5.9e-06 Score=72.39 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=46.8
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCC-c-ccCCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNM-P-DFSICP 198 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~-~-lls~cp 198 (461)
.++++|.+... . ...+| .+..+++|++|.++.. ....++....+++|++|+|.+.. .+. . .++.+|
T Consensus 44 ~~L~~L~l~~n-------~--i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANI-------N--VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HTCCEEEEESS-------C--CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred CCccEEeccCC-------C--ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 46777777653 1 22444 4556777777777732 11222233567777777777766 442 2 666777
Q ss_pred ccceEEEEeecC
Q 012533 199 VLEDLSIDYSLN 210 (461)
Q Consensus 199 ~Le~L~L~~c~~ 210 (461)
.|+.|.+.+|..
T Consensus 113 ~L~~L~Ls~n~i 124 (197)
T 4ezg_A 113 SLTLLDISHSAH 124 (197)
T ss_dssp TCCEEECCSSBC
T ss_pred CCCEEEecCCcc
Confidence 777777777654
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.88 E-value=7.1e-07 Score=84.47 Aligned_cols=173 Identities=15% Similarity=0.070 Sum_probs=91.1
Q ss_pred cCcccceEEeceee-cCCc----ccCCCCccceEEEEeecCCCCCceeEee-----cccccEEEEeecccccccCceeEE
Q 012533 175 CFPRVKKFHVEIYK-PNMP----DFSICPVLEDLSIDYSLNFDWDADISIS-----SQTLKRLNLMIGGPIVFANEHQAT 244 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~~~~----lls~cp~Le~L~L~~c~~~~~~~~l~i~-----~~~L~~L~l~~~~~~~~~~~~~~~ 244 (461)
.+++|++|+|.+.. .+.. ++..++.|++|.|.++.. ......--. .++|+.|.+.++...... .. ..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~-~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-CE-QV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-TT-TC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccch-HH-Hh
Confidence 47778888888777 5433 237778888888887754 221100001 167777777765431110 00 11
Q ss_pred EecCCceEEEEecceec-------eeeeeCCCCceEEEEEeeeecccCCccch-hHHHHHhhcCCCceEEEEecchhhcc
Q 012533 245 IEAPKLEHLHVNDGTLV-------SYLVYELHSLCDARLDIDYSRVRSDPVRA-DHALQLLKKLTNLKSLYLSCGTIYAL 316 (461)
Q Consensus 245 i~ap~L~~L~l~~~~~~-------~~~l~~~~~L~~~~i~~~~~~~~~~~~~~-~~~~~~l~~l~~l~~L~l~~~~~~~~ 316 (461)
-..++|++|++++.... ...+..+++|+.+.+..+.-. .. .....++..+++++.|.++...+.
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~-- 241 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME------TPSGVCSALAAARVQLQGLDLSHNSLR-- 241 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC------CHHHHHHHHHHTTCCCSEEECTTSCCC--
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc------chHHHHHHHHhcCCCCCEEECCCCcCC--
Confidence 24677888887765421 112256677777666554210 00 122345566778888888776655
Q ss_pred ccchhhhhccccccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEe
Q 012533 317 GEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
...... .+..+.+|++|++..+... .+..-+. ++|++|++..
T Consensus 242 -----~~~~~~--~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 242 -----DAAGAP--SCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp -----SSCCCS--CCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCS
T ss_pred -----cccchh--hhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCC
Confidence 111000 2233467777777654321 1111111 6777777765
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.87 E-value=1.1e-05 Score=75.29 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=62.3
Q ss_pred ccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEee-cccccEEEE
Q 012533 152 NSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISIS-SQTLKRLNL 229 (461)
Q Consensus 152 ~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l 229 (461)
.+++|++|.++...-..+ +....+++|++|+|++.. .+-.-++.++.|+.|.+.++.. ..+.. +. .++|+.|.+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV-KDLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCGGG--GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcC-CCChh--hccCCCCCEEEC
Confidence 467899999882211112 234678999999999887 4432588899999999998864 33222 22 467888877
Q ss_pred eecccccccCceeEEEecCCceEEEEecce
Q 012533 230 MIGGPIVFANEHQATIEAPKLEHLHVNDGT 259 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 259 (461)
.++... .... ....++|++|.+.+..
T Consensus 120 ~~n~i~---~~~~-l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 120 EHNGIS---DING-LVHLPQLESLYLGNNK 145 (291)
T ss_dssp TTSCCC---CCGG-GGGCTTCCEEECCSSC
T ss_pred CCCcCC---CChh-hcCCCCCCEEEccCCc
Confidence 765431 1111 1134667777776554
No 82
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.87 E-value=8.2e-06 Score=75.26 Aligned_cols=37 Identities=22% Similarity=0.497 Sum_probs=34.5
Q ss_pred cccCCCChHHHHHHHcCCChHhHh-hhcccchhhHHHh
Q 012533 16 DRISCMPDSILCHILSFLSTEDAV-RTSILSSRWKLVW 52 (461)
Q Consensus 16 D~is~LPd~vL~~Ils~L~~rd~~-rts~lSrrWr~lw 52 (461)
..+..||||+|.+||++||.++++ +++.|||+||.+-
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 478899999999999999999999 9999999999863
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.86 E-value=1.2e-05 Score=74.16 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=97.8
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEecccccccCCCCc-ccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLETDFVFKSPSSG-ICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~p~~~-~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.++++|++... ....+|. .+..+++|++|.|+...-..+|+.. ..+++|++|+|.+.. .+-. .+..
T Consensus 37 ~~l~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 107 (270)
T 2o6q_A 37 ADTKKLDLQSN---------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ 107 (270)
T ss_dssp TTCSEEECCSS---------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEECcCC---------CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc
Confidence 46777777653 1234444 3455889999999832212334433 578999999999887 4432 7888
Q ss_pred CCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEE
Q 012533 197 CPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDAR 275 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~ 275 (461)
++.|+.|.+.++.. ..+..-.+ ..++|+.|.+.++....... ...-..++|++|.+.+.......
T Consensus 108 l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~----------- 173 (270)
T 2o6q_A 108 LVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPK--GVFDKLTSLKELRLYNNQLKRVP----------- 173 (270)
T ss_dssp CSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCC-----------
T ss_pred ccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcCCccCH--hHccCCcccceeEecCCcCcEeC-----------
Confidence 99999999988754 21111011 23566666665543210000 00012355555555543221110
Q ss_pred EEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEe
Q 012533 276 LDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR 345 (461)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 345 (461)
...+..+++++.|.|+...+. .+... .+..+.+|++|++..+
T Consensus 174 ------------------~~~~~~l~~L~~L~L~~N~l~-------~~~~~---~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 174 ------------------EGAFDKLTELKTLKLDNNQLK-------RVPEG---AFDSLEKLKMLQLQEN 215 (270)
T ss_dssp ------------------TTTTTTCTTCCEEECCSSCCS-------CCCTT---TTTTCTTCCEEECCSS
T ss_pred ------------------hhHhccCCCcCEEECCCCcCC-------cCCHH---HhccccCCCEEEecCC
Confidence 113456778888888877665 33321 4455678888888754
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.86 E-value=8.8e-06 Score=77.06 Aligned_cols=166 Identities=14% Similarity=0.061 Sum_probs=114.2
Q ss_pred ccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeEee-cccccEEEEeecccccccCceeEEEecCC
Q 012533 174 ICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADISIS-SQTLKRLNLMIGGPIVFANEHQATIEAPK 249 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~i~ap~ 249 (461)
..+++|++|+|++.. .+-. .+..++.|+.|.|.++.. .....+. .++|+.|.+.++.. ..+ ...|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~l~~L~~L~Ls~n~l------~~l-~~~~~ 100 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YETLDLESLSTLRTLDLNNNYV------QEL-LVGPS 100 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC---EEEEEETTCTTCCEEECCSSEE------EEE-EECTT
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC---CcchhhhhcCCCCEEECcCCcc------ccc-cCCCC
Confidence 457799999999988 5543 789999999999999865 2233343 58899999987643 222 24599
Q ss_pred ceEEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccc
Q 012533 250 LEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQY 329 (461)
Q Consensus 250 L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~ 329 (461)
|++|.+.+..........+++|+.+.+..+.-... ....+..+++++.|.++...+. .+....
T Consensus 101 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~-- 163 (317)
T 3o53_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEID-------TVNFAE-- 163 (317)
T ss_dssp CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSG--------GGBCTGGGSSEEEEECTTSCCC-------EEEGGG--
T ss_pred cCEEECCCCccCCcCccccCCCCEEECCCCCCCCc--------cchhhhccCCCCEEECCCCCCC-------cccHHH--
Confidence 99999999877777777788999888876532110 0113456889999999987665 111100
Q ss_pred cCCCCCCeeEEEEEEecc-CcchhhHHhhcCCCCceeEEEee
Q 012533 330 FLPTFSNLSFLEVRIREY-GWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~-~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
....+.+|++|++..+.. ..... ..+|+|++|++...
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSN 201 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSS
T ss_pred HhhccCcCCEEECCCCcCcccccc----cccccCCEEECCCC
Confidence 223568899998876542 11111 14799999999774
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.86 E-value=3e-05 Score=69.98 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=64.9
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEecccc-cccCCC-CcccCcccceEEeceee-cCCc---cc
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLETDF-VFKSPS-SGICFPRVKKFHVEIYK-PNMP---DF 194 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-~~~~p~-~~~~~~~L~~L~L~~~~-~~~~---ll 194 (461)
.++++|++... ....+|. .+..+++|++|+|+... -..+++ ....+++|++|+|.++. -... .+
T Consensus 31 ~~l~~L~l~~n---------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIET---------HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESC---------CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCC---------cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 47888888764 2344555 34458999999999331 112333 44689999999999844 3222 77
Q ss_pred CCCCccceEEEEeecCCCCCceeEeeccccc---EEEEeec
Q 012533 195 SICPVLEDLSIDYSLNFDWDADISISSQTLK---RLNLMIG 232 (461)
Q Consensus 195 s~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~---~L~l~~~ 232 (461)
..++.|+.|.+.++.. ..+.. --..++|+ .|.+.++
T Consensus 102 ~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp ECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESC
T ss_pred CCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCC
Confidence 8899999999999865 32222 01134555 7777654
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.85 E-value=1.7e-05 Score=81.41 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=47.1
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecc--cccccCCCCcccCcccceEEeceee-cCCcccCCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET--DFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICP 198 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~--~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp 198 (461)
.++++|++... ....+|.. .+.+|++|+|+. ...+..|.....+++|++|+|++.. .+. .+..++
T Consensus 100 ~~L~~L~Ls~N---------~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~ 167 (562)
T 3a79_B 100 QDLEYLDVSHN---------RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVA 167 (562)
T ss_dssp TTCCEEECTTS---------CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TTGGGT
T ss_pred CCCCEEECCCC---------cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-chhhhh
Confidence 57888887653 13356655 678888888882 2222233455678888888888876 432 123334
Q ss_pred cc--ceEEEEeec
Q 012533 199 VL--EDLSIDYSL 209 (461)
Q Consensus 199 ~L--e~L~L~~c~ 209 (461)
.| +.|.+.++.
T Consensus 168 ~L~L~~L~L~~n~ 180 (562)
T 3a79_B 168 HLHLSCILLDLVS 180 (562)
T ss_dssp TSCEEEEEEEESS
T ss_pred hceeeEEEeeccc
Confidence 44 777777763
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.82 E-value=1.6e-05 Score=73.55 Aligned_cols=125 Identities=21% Similarity=0.179 Sum_probs=77.8
Q ss_pred cccceEEeceee-cCC-c-ccCCCCccceEEEEeecCCCCCceeE---e-ecccccEEEEeecccccccCceeEEEecCC
Q 012533 177 PRVKKFHVEIYK-PNM-P-DFSICPVLEDLSIDYSLNFDWDADIS---I-SSQTLKRLNLMIGGPIVFANEHQATIEAPK 249 (461)
Q Consensus 177 ~~L~~L~L~~~~-~~~-~-lls~cp~Le~L~L~~c~~~~~~~~l~---i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~ 249 (461)
++|++|+|++.. .+- . .+..++.|+.|.+.++.. ..+. + ..++|+.|.+.++...... . ...-..++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLA-L-GAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEEC-T-TTTTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcC----CccCHHHccCCcCCCEEECCCCccCccC-h-hhhcCCcc
Confidence 468999998877 432 2 788899999999999854 2222 1 2478999999866431100 0 00124589
Q ss_pred ceEEEEecceece---eeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhh
Q 012533 250 LEHLHVNDGTLVS---YLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIY 314 (461)
Q Consensus 250 L~~L~l~~~~~~~---~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 314 (461)
|++|.+.+..... ..+..+++|+.+.+..+.-... .+...+..+++++.|.++...+.
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-------CCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-------cCchhhccCCCCCEEECCCCCCC
Confidence 9999998765432 2355677777777665421110 01224566777888887776554
No 88
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.80 E-value=5.3e-06 Score=75.62 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=32.2
Q ss_pred ccCCCChHHHHHHHcCCChHhHhhhcccchhhHH
Q 012533 17 RISCMPDSILCHILSFLSTEDAVRTSILSSRWKL 50 (461)
Q Consensus 17 ~is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~ 50 (461)
.++.||+||+.+||+||+++|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999995
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.79 E-value=1.1e-05 Score=74.62 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=74.3
Q ss_pred ccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCce
Q 012533 174 ICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLE 251 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~ 251 (461)
..+++|++|+|.+.. .+-..+..++.|++|.|.++.. .....-.+ ..++|+.|.+.++...... ....-..++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLP--DGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCcCCccC--HHHhccCCCCC
Confidence 445555555555544 3211444555555555555432 11110001 1345555555443321000 00001234555
Q ss_pred EEEEecceeceee---eeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhcccc
Q 012533 252 HLHVNDGTLVSYL---VYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQ 328 (461)
Q Consensus 252 ~L~l~~~~~~~~~---l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~ 328 (461)
+|.+.+....... +..+++|+.+.+..+.-.+. ....+..+++++.|.++...+. .+...
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~-------~~~~~-- 199 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL--------PEGVFDKLTQLKDLRLYQNQLK-------SVPDG-- 199 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCS-------CCCTT--
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCcc--------CHHHhcCCccCCEEECCCCcCC-------ccCHH--
Confidence 5555544332221 23445555555444311100 0123456677777777776655 23321
Q ss_pred ccCCCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEe
Q 012533 329 YFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 329 ~~~~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
.+..+.+|++|++..+... ..||+|+.|.+..
T Consensus 200 -~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 200 -VFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWI 231 (272)
T ss_dssp -TTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHH
T ss_pred -HHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHH
Confidence 3455677777777654221 1356666665544
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.79 E-value=2.5e-05 Score=72.98 Aligned_cols=164 Identities=19% Similarity=0.170 Sum_probs=99.6
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCcc
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVL 200 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~L 200 (461)
.++++|.+..+ ....+|. +..+++|++|.|+...-..+++ ...+++|+.|+|.+.. .+-.-+..++.|
T Consensus 46 ~~L~~L~l~~~---------~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 114 (291)
T 1h6t_A 46 NSIDQIIANNS---------DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKL 114 (291)
T ss_dssp HTCCEEECTTS---------CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTC
T ss_pred CcccEEEccCC---------CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCC
Confidence 57888887653 1233443 5668999999998321111222 4788999999999887 442268889999
Q ss_pred ceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEeee
Q 012533 201 EDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDY 280 (461)
Q Consensus 201 e~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~ 280 (461)
+.|.+.++.. ..+..+ -..++|+.|.+.++... ... ..-..++|+.|.+.+......
T Consensus 115 ~~L~L~~n~i-~~~~~l-~~l~~L~~L~l~~n~l~---~~~-~l~~l~~L~~L~L~~N~l~~~----------------- 171 (291)
T 1h6t_A 115 KSLSLEHNGI-SDINGL-VHLPQLESLYLGNNKIT---DIT-VLSRLTKLDTLSLEDNQISDI----------------- 171 (291)
T ss_dssp CEEECTTSCC-CCCGGG-GGCTTCCEEECCSSCCC---CCG-GGGGCTTCSEEECCSSCCCCC-----------------
T ss_pred CEEECCCCcC-CCChhh-cCCCCCCEEEccCCcCC---cch-hhccCCCCCEEEccCCccccc-----------------
Confidence 9999999865 333211 12578999999876541 111 111346677777665432111
Q ss_pred ecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEe
Q 012533 281 SRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR 345 (461)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 345 (461)
. .+..+++++.|.++...+. .+. .+..+.+|+.|++..+
T Consensus 172 -------------~-~l~~l~~L~~L~L~~N~i~-------~l~-----~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 172 -------------V-PLAGLTKLQNLYLSKNHIS-------DLR-----ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -------------G-GGTTCTTCCEEECCSSCCC-------BCG-----GGTTCTTCSEEEEEEE
T ss_pred -------------h-hhcCCCccCEEECCCCcCC-------CCh-----hhccCCCCCEEECcCC
Confidence 0 1455667777777766554 111 3445566777777655
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.76 E-value=9e-06 Score=83.95 Aligned_cols=164 Identities=21% Similarity=0.218 Sum_probs=97.1
Q ss_pred ccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEee-cccccEEEE
Q 012533 152 NSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISIS-SQTLKRLNL 229 (461)
Q Consensus 152 ~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l 229 (461)
...+|+.|.+....-..+ +....+++|+.|+|++.. .+-.-+..++.|+.|.|.+|.. ..+. .+. .++|+.|.+
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l-~~l~--~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI-KDLS--SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC-CCCT--TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC-CCCh--hhccCCCCCEEEe
Confidence 367788888872211112 234789999999999888 4433588999999999999865 3322 122 578888888
Q ss_pred eecccccccCceeEEEecCCceEEEEecceecee-eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEE
Q 012533 230 MIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY-LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYL 308 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l 308 (461)
.++... .... ....|+|+.|.+++...... .+..+++|+.+.+..+.-.+ +. .+..+++|+.|.|
T Consensus 117 s~N~l~---~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~---------~~-~l~~l~~L~~L~L 182 (605)
T 1m9s_A 117 EHNGIS---DING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---------IV-PLAGLTKLQNLYL 182 (605)
T ss_dssp TTSCCC---CCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC---------CG-GGTTCTTCCEEEC
T ss_pred cCCCCC---CCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC---------ch-hhccCCCCCEEEC
Confidence 766542 1111 12457888888877654332 23456666666665442110 00 1556666666666
Q ss_pred ecchhhccccchhhhhccccccCCCCCCeeEEEEEEe
Q 012533 309 SCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR 345 (461)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 345 (461)
+.+.+. .+. .+..+++|+.|+|..+
T Consensus 183 s~N~i~-------~l~-----~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 183 SKNHIS-------DLR-----ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CSSCCC-------BCG-----GGTTCTTCSEEECCSE
T ss_pred cCCCCC-------CCh-----HHccCCCCCEEEccCC
Confidence 665544 111 3344566666666544
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.71 E-value=1.8e-05 Score=81.62 Aligned_cols=148 Identities=16% Similarity=0.076 Sum_probs=90.1
Q ss_pred ccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEeecccccEEE
Q 012533 150 IYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLN 228 (461)
Q Consensus 150 l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~ 228 (461)
+..+++|+.|.|+...-..+++ ...+++|+.|+|.+.. .+-.-+..++.|+.|.|.+|.. ..+..+ -..++|+.|.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l-~~l~~l-~~l~~L~~L~ 137 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI-SDINGL-VHLPQLESLY 137 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCC-CCCGGG-GGCTTCSEEE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCC-CCCccc-cCCCccCEEE
Confidence 5567788888887211111222 4677888888888777 4322677788888888877764 222211 1256788888
Q ss_pred EeecccccccCceeEEEecCCceEEEEecceecee-eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEE
Q 012533 229 LMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSY-LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLY 307 (461)
Q Consensus 229 l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 307 (461)
+.++... +.. ..-..++|+.|.+++...... .+..+++|+.+.+..+.-.+ + ..+..+++|+.|.
T Consensus 138 Ls~N~l~---~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~---------l-~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 138 LGNNKIT---DIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---------L-RALAGLKNLDVLE 203 (605)
T ss_dssp CCSSCCC---CCG-GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB---------C-GGGTTCTTCSEEE
T ss_pred CCCCccC---Cch-hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC---------C-hHHccCCCCCEEE
Confidence 8766441 111 112457888888877654332 35677888888776652211 1 2367788999999
Q ss_pred Eecchhh
Q 012533 308 LSCGTIY 314 (461)
Q Consensus 308 l~~~~~~ 314 (461)
|+.+.+.
T Consensus 204 L~~N~l~ 210 (605)
T 1m9s_A 204 LFSQECL 210 (605)
T ss_dssp CCSEEEE
T ss_pred ccCCcCc
Confidence 9877654
No 93
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=4.6e-06 Score=71.05 Aligned_cols=80 Identities=8% Similarity=0.032 Sum_probs=34.5
Q ss_pred ccceEEeceee-cCC-c-ccCCCCccceEEEEeecCCCCCceeEee-----cccccEEEEeecccccccCceeEEEecCC
Q 012533 178 RVKKFHVEIYK-PNM-P-DFSICPVLEDLSIDYSLNFDWDADISIS-----SQTLKRLNLMIGGPIVFANEHQATIEAPK 249 (461)
Q Consensus 178 ~L~~L~L~~~~-~~~-~-lls~cp~Le~L~L~~c~~~~~~~~l~i~-----~~~L~~L~l~~~~~~~~~~~~~~~i~ap~ 249 (461)
+|+.|+|+++. ++. + .++.||.|++|+|.+|..+.+...-.+. +++|+.|.+.+|..+++.+...+. .+|+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCC
Confidence 34444444444 222 2 3345555555555555442211111111 124555555544433333333222 4566
Q ss_pred ceEEEEecc
Q 012533 250 LEHLHVNDG 258 (461)
Q Consensus 250 L~~L~l~~~ 258 (461)
|++|.++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666654
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.67 E-value=2e-06 Score=83.14 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=38.7
Q ss_pred HHHHHhhcCC-CceEEEEecchhhccccchhhhhccccccCCC-CCCeeEEEEEEecc---CcchhhHHhhcCCCCceeE
Q 012533 292 HALQLLKKLT-NLKSLYLSCGTIYALGEAYRHLYDAHQYFLPT-FSNLSFLEVRIREY---GWWILPIIFNCSPNLESFV 366 (461)
Q Consensus 292 ~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~---~~~~l~~lL~~~P~Le~L~ 366 (461)
.+...+..++ +++.|.|+.+.+...+.. .+.. .+.. .++|++|+|..+.. ....+..+++.+++|++|+
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~--~l~~----~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYA--ELAY----IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHH--HHHH----HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHH--HHHH----HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 4455666663 777777776655410000 0110 1111 24677777766533 2234556666777777777
Q ss_pred EEee
Q 012533 367 LIMD 370 (461)
Q Consensus 367 l~~~ 370 (461)
+...
T Consensus 260 L~~n 263 (362)
T 3goz_A 260 LDYD 263 (362)
T ss_dssp EEHH
T ss_pred eccC
Confidence 7664
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.67 E-value=1.1e-05 Score=76.31 Aligned_cols=193 Identities=17% Similarity=0.148 Sum_probs=100.5
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcc--cccCcccEEEecccccccCCCCcccC-----cccceEEeceee-cCCc-
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCI--YNSETLEILKLETDFVFKSPSSGICF-----PRVKKFHVEIYK-PNMP- 192 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~p~~~~~~-----~~L~~L~L~~~~-~~~~- 192 (461)
.++++|++.... -...+|..+ ...++|++|+|+...-...|.....+ ++|++|+|++.. .+-.
T Consensus 95 ~~L~~L~L~~n~--------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 95 SGLQELTLENLE--------VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp SCCCEEEEEEEB--------CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred CCccEEEccCCc--------ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 578888876641 122445544 45777888888721111113222333 778888887777 4432
Q ss_pred -ccCCCCccceEEEEeecCCCCCce------eE-eecccccEEEEeecccccccCc-eeEEEecCCceEEEEecceecee
Q 012533 193 -DFSICPVLEDLSIDYSLNFDWDAD------IS-ISSQTLKRLNLMIGGPIVFANE-HQATIEAPKLEHLHVNDGTLVSY 263 (461)
Q Consensus 193 -lls~cp~Le~L~L~~c~~~~~~~~------l~-i~~~~L~~L~l~~~~~~~~~~~-~~~~i~ap~L~~L~l~~~~~~~~ 263 (461)
.+..++.|++|.+.++.. ... +. -..++|+.|.+.++........ ..+.-..++|++|.+++......
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPE---LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp TTCCCCSSCCEEECCSCTT---CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred HHhccCCCCCEEECCCCCc---CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 667778888888877653 111 00 1235666666655432100000 00001225566665554432111
Q ss_pred eeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEE
Q 012533 264 LVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVR 343 (461)
Q Consensus 264 ~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 343 (461)
.. ...+..+++++.|.++...+. .+.. .++ .+|++|++.
T Consensus 244 ~~----------------------------~~~~~~l~~L~~L~Ls~N~l~-------~ip~----~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 244 AG----------------------------APSCDWPSQLNSLNLSFTGLK-------QVPK----GLP--AKLSVLDLS 282 (312)
T ss_dssp CC----------------------------CSCCCCCTTCCEEECTTSCCS-------SCCS----SCC--SEEEEEECC
T ss_pred cc----------------------------hhhhhhcCCCCEEECCCCccC-------hhhh----hcc--CCceEEECC
Confidence 00 002234578888888877655 1111 222 688888887
Q ss_pred EeccCcchhhHHhhcCCCCceeEEEe
Q 012533 344 IREYGWWILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 344 ~~~~~~~~l~~lL~~~P~Le~L~l~~ 369 (461)
.+... .+.. +..+|+|++|++..
T Consensus 283 ~N~l~--~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 283 YNRLD--RNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SSCCC--SCCC-TTTSCEEEEEECTT
T ss_pred CCCCC--CChh-HhhCCCCCEEeccC
Confidence 65331 1222 56788888888865
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.66 E-value=4.6e-05 Score=66.58 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=79.0
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSIC 197 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~c 197 (461)
.++++|.+..+. ...+..+..+++|++|+++. ......|.....+++|++|+|++.. .+.. .++.+
T Consensus 66 ~~L~~L~l~~n~----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 66 HNIKDLTINNIH----------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp TTCSEEEEESCC----------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred CCCCEEEccCCC----------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 589999998741 12223456689999999983 2222234455789999999999998 6543 78899
Q ss_pred CccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecce
Q 012533 198 PVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGT 259 (461)
Q Consensus 198 p~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 259 (461)
|.|++|.|.+|..+..+.. --..++|+.|.+.++.... .. ..-..|+|++|.+.+..
T Consensus 136 ~~L~~L~L~~n~~i~~~~~-l~~l~~L~~L~l~~n~i~~---~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD---YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEECCSCTBCCCCGG-GGGCSSCCEEECTTBCCCC---CT-TGGGCSSCCEEEECBC-
T ss_pred CCCCEEEccCCCCccccHh-hcCCCCCCEEECCCCCCcC---hH-HhccCCCCCEEEeeCcc
Confidence 9999999999974233321 1124678888887654311 11 11234677777776543
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.64 E-value=1.8e-05 Score=73.93 Aligned_cols=194 Identities=15% Similarity=0.091 Sum_probs=106.5
Q ss_pred cccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEee
Q 012533 143 PVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISIS 220 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~ 220 (461)
...+|..+. ++++.|+|+. ......+.....+++|+.|+|.+.. .+-.....+|.|+.|.|.++.. ..+...--.
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~ 98 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQT 98 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCC-SSCCCCTTT
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcC-CcCchhhcc
Confidence 344555443 5677787772 1111112233567788888887766 3222336778888888877654 222111112
Q ss_pred cccccEEEEeecccccccCceeEEEecCCceEEEEecceeceee---eeCCCCceEEEEEeeeecccCCccchhHHHHHh
Q 012533 221 SQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYL---VYELHSLCDARLDIDYSRVRSDPVRADHALQLL 297 (461)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l 297 (461)
.++|+.|.+.++...... ....-..++|++|.+.+....... +..+++|+.+.+..+.-... -...+
T Consensus 99 l~~L~~L~l~~N~l~~l~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l--------~~~~~ 168 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL--------PAGLL 168 (290)
T ss_dssp CTTCCEEECCSSCCCCCC--SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC--------CTTTT
T ss_pred CCCCCEEECCCCcCcccC--HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc--------CHHHh
Confidence 467777777765431100 000113578888888876554332 34567788777765421110 01255
Q ss_pred hcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEec----cCcchhhHHhhcCC
Q 012533 298 KKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIRE----YGWWILPIIFNCSP 360 (461)
Q Consensus 298 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~l~~lL~~~P 360 (461)
..+++++.|.|+...+. .+.. .+....+|++|.|..+. .+..++...++.-+
T Consensus 169 ~~l~~L~~L~L~~N~l~-------~ip~----~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLY-------TIPK----GFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp TTCTTCCEEECCSSCCC-------CCCT----TTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred cCcCCCCEEECCCCcCC-------ccCh----hhcccccCCeEEeCCCCccCcCccHHHHHHHHhCc
Confidence 67899999999988766 2221 23344578888887542 23344555555443
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.59 E-value=6.8e-06 Score=79.39 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=37.1
Q ss_pred HHHHhhc-CCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEec---cCcchhhHHhhcCCCCceeE
Q 012533 293 ALQLLKK-LTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIRE---YGWWILPIIFNCSPNLESFV 366 (461)
Q Consensus 293 ~~~~l~~-l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~l~~lL~~~P~Le~L~ 366 (461)
+...+.. .++++.|.|+...+...+.. .+. ..+..+.+|++|++..+. .....+..+.+.+++++.|.
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~----~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLE--NLK----LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHH--HHH----HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHH--HHH----HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 4455555 45888888887765510000 000 034566788888888764 23444555555555444443
No 99
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.56 E-value=5.7e-05 Score=75.26 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=64.8
Q ss_pred cCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEeeccc
Q 012533 145 ELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISISSQT 223 (461)
Q Consensus 145 ~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~ 223 (461)
.+| .+..+.+|++|+++...-..+| ...++|++|+|.+.. .+-.-+..++.|++|.+.++.. .. +.-..++
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l-~~---l~~~~~~ 216 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL-KK---LPDLPLS 216 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SS---CCCCCTT
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC-Cc---CCCCcCc
Confidence 355 3556777777777722111123 223577777777766 4311467777888888777654 21 1112356
Q ss_pred ccEEEEeecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEee
Q 012533 224 LKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDID 279 (461)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~ 279 (461)
|+.|.+.++... .... ....++|++|.+.+.....+. ...++|+.+.+..+
T Consensus 217 L~~L~l~~n~l~---~lp~-~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 217 LESIVAGNNILE---ELPE-LQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDN 267 (454)
T ss_dssp CCEEECCSSCCS---SCCC-CTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSS
T ss_pred ccEEECcCCcCC---cccc-cCCCCCCCEEECCCCcCCccc-ccccccCEEECCCC
Confidence 777777665431 1111 124567777777665443221 12355666555443
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.56 E-value=5.7e-05 Score=68.77 Aligned_cols=159 Identities=17% Similarity=0.112 Sum_probs=82.9
Q ss_pred cccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeE
Q 012533 143 PVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADIS 218 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~ 218 (461)
...+|..+. ++|+.|.|+. ......+.....+++|++|+|++.. .+-. .+..++.|+.|.|.++.. ..+..-.
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~ 102 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGV 102 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-cccChhH
Confidence 345555443 5788888872 1111112234677888888888877 4432 677788888888877654 1111000
Q ss_pred e-ecccccEEEEeecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHh
Q 012533 219 I-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLL 297 (461)
Q Consensus 219 i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l 297 (461)
+ ..++|+.|.+.++....... ...-..++|+.|.+.+....... ...+
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~-----------------------------~~~~ 151 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQSIP-----------------------------AGAF 151 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCC-----------------------------TTTT
T ss_pred hcccCCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCCccC-----------------------------HHHc
Confidence 1 13455555555443210000 00012344555555443221110 1134
Q ss_pred hcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEe
Q 012533 298 KKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR 345 (461)
Q Consensus 298 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 345 (461)
..+++++.|.|+...+. .+... .+..+.+|++|++..+
T Consensus 152 ~~l~~L~~L~L~~N~l~-------~~~~~---~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQ-------SVPHG---AFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTCTTCCEEECCSSCCS-------CCCTT---TTTTCTTCCEEECCSC
T ss_pred CcCcCCCEEECCCCcCC-------ccCHH---HHhCCCCCCEEEeeCC
Confidence 56778888888877666 33321 4455677888888755
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.56 E-value=0.00015 Score=66.48 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=74.5
Q ss_pred cccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEeecccccEEEE
Q 012533 151 YNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNL 229 (461)
Q Consensus 151 ~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l 229 (461)
..+.+|++|.++...-..++ ....+++|+.|+|++.. .+-.-+..++.|+.|.|.++.. ..+..+. .++|+.|.+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l-~~l~~~~--~~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRL-KNLNGIP--SACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC-SCCTTCC--CSSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCcc-CCcCccc--cCcccEEEc
Confidence 34666777777621111112 33567777777777766 3322367777777777777654 2222111 155555555
Q ss_pred eecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEe
Q 012533 230 MIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLS 309 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 309 (461)
.++.... ... .-..++|+.|.+.+..... + ..+..+++++.|.++
T Consensus 114 ~~N~l~~---~~~-l~~l~~L~~L~Ls~N~i~~------------------------------~-~~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 114 DNNELRD---TDS-LIHLKNLEILSIRNNKLKS------------------------------I-VMLGFLSKLEVLDLH 158 (263)
T ss_dssp CSSCCSB---SGG-GTTCTTCCEEECTTSCCCB------------------------------C-GGGGGCTTCCEEECT
T ss_pred cCCccCC---Chh-hcCcccccEEECCCCcCCC------------------------------C-hHHccCCCCCEEECC
Confidence 5443210 000 0123444444444332110 0 135567778888887
Q ss_pred cchhhccccchhhhhccccccCCCCCCeeEEEEEEe
Q 012533 310 CGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIR 345 (461)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 345 (461)
...+. .+ ..+..+++|+.|++..+
T Consensus 159 ~N~i~-------~~-----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 159 GNEIT-------NT-----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp TSCCC-------BC-----TTSTTCCCCCEEEEEEE
T ss_pred CCcCc-------ch-----HHhccCCCCCEEeCCCC
Confidence 76655 11 14555677777777765
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.55 E-value=7.6e-05 Score=68.54 Aligned_cols=144 Identities=14% Similarity=0.106 Sum_probs=96.3
Q ss_pred ccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCCCceeEee-cccccEEEEeecccccccCceeEEEecCCce
Q 012533 174 ICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISIS-SQTLKRLNLMIGGPIVFANEHQATIEAPKLE 251 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~ 251 (461)
..+++|++|+|.+.. ..-.-+..++.|++|.|.++.. .++.. +. .++|+.|.+.++....... +. .++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i-~~~~~--l~~l~~L~~L~L~~N~l~~l~~---~~--~~~L~ 109 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI-SDLSP--LKDLTKLEELSVNRNRLKNLNG---IP--SACLS 109 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG--GTTCSSCCEEECCSSCCSCCTT---CC--CSSCC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc-CCChh--hccCCCCCEEECCCCccCCcCc---cc--cCccc
Confidence 678999999999887 4322677889999999998865 33333 32 5778888887665422111 11 17777
Q ss_pred EEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccC
Q 012533 252 HLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFL 331 (461)
Q Consensus 252 ~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (461)
+|.+.+...... ..+..+++++.|.++...+. .+. .+
T Consensus 110 ~L~L~~N~l~~~-------------------------------~~l~~l~~L~~L~Ls~N~i~-------~~~-----~l 146 (263)
T 1xeu_A 110 RLFLDNNELRDT-------------------------------DSLIHLKNLEILSIRNNKLK-------SIV-----ML 146 (263)
T ss_dssp EEECCSSCCSBS-------------------------------GGGTTCTTCCEEECTTSCCC-------BCG-----GG
T ss_pred EEEccCCccCCC-------------------------------hhhcCcccccEEECCCCcCC-------CCh-----HH
Confidence 777766532110 13567889999999988766 221 34
Q ss_pred CCCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEeee
Q 012533 332 PTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDV 371 (461)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~~ 371 (461)
..+.+|++|++..+.... + ..+..+++|+.|++....
T Consensus 147 ~~l~~L~~L~L~~N~i~~--~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITN--T-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGCTTCCEEECTTSCCCB--C-TTSTTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEECCCCcCcc--h-HHhccCCCCCEEeCCCCc
Confidence 456889999887654322 2 556789999999998864
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.54 E-value=0.00016 Score=69.39 Aligned_cols=215 Identities=16% Similarity=0.054 Sum_probs=108.2
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCccc-ccCcccEEEeccc--ccccCCC-CcccCcccceEEeceee-cCCc---c
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIY-NSETLEILKLETD--FVFKSPS-SGICFPRVKKFHVEIYK-PNMP---D 193 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~--~~~~~p~-~~~~~~~L~~L~L~~~~-~~~~---l 193 (461)
.++++|++... ....+|...| ++++|++|+|+.. ... +|+ ...++++|+++...+.. -..+ .
T Consensus 30 ~~l~~L~Ls~N---------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLT---------KLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEESC---------CCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccCC---------cCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcccccCchh
Confidence 46777777663 2345665544 4788888888722 121 222 22456666655444443 2222 6
Q ss_pred cCCCCccceEEEEeecCCCCCcee-EeecccccEEEEeecccccccCceeEEEecCCceEEEEecceeceeeee--CCCC
Q 012533 194 FSICPVLEDLSIDYSLNFDWDADI-SISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVY--ELHS 270 (461)
Q Consensus 194 ls~cp~Le~L~L~~c~~~~~~~~l-~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~--~~~~ 270 (461)
+..++.|+.|.+.++.. ...... .....++..|.+..+.....-....+.-....++.|.+.+.....+.-. ...+
T Consensus 100 f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp BCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 77888888888888764 211111 1223455556654332110000000000124577777776554332211 2233
Q ss_pred ceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCcc
Q 012533 271 LCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWW 350 (461)
Q Consensus 271 L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 350 (461)
|.++.+........ .-...+.++++++.|.|+...+. .+ ....|.+|++|.+.... ...
T Consensus 179 L~~l~l~~~n~l~~-------i~~~~f~~l~~L~~LdLs~N~l~-------~l------p~~~~~~L~~L~~l~~~-~l~ 237 (350)
T 4ay9_X 179 LDELNLSDNNNLEE-------LPNDVFHGASGPVILDISRTRIH-------SL------PSYGLENLKKLRARSTY-NLK 237 (350)
T ss_dssp EEEEECTTCTTCCC-------CCTTTTTTEECCSEEECTTSCCC-------CC------CSSSCTTCCEEECTTCT-TCC
T ss_pred hhHHhhccCCcccC-------CCHHHhccCcccchhhcCCCCcC-------cc------ChhhhccchHhhhccCC-CcC
Confidence 44433321111100 00125677889999999987666 11 11246778777654332 222
Q ss_pred hhhHHhhcCCCCceeEEEe
Q 012533 351 ILPIIFNCSPNLESFVLIM 369 (461)
Q Consensus 351 ~l~~lL~~~P~Le~L~l~~ 369 (461)
.+.. +..+++|+.+++..
T Consensus 238 ~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-TTTCCSCCEEECSC
T ss_pred cCCC-chhCcChhhCcCCC
Confidence 2332 46778888888754
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.49 E-value=3.4e-05 Score=65.46 Aligned_cols=81 Identities=16% Similarity=0.049 Sum_probs=47.1
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICP 198 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp 198 (461)
.++++|.+... ......+|..+..+++|++|.|+...-... .....+++|+.|+|++.. .+.. .+..+|
T Consensus 24 ~~L~~L~l~~n-------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNC-------KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSC-------BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCC-------CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 35677766553 111125666555677777777772111111 333567777777777777 5433 556677
Q ss_pred ccceEEEEeecC
Q 012533 199 VLEDLSIDYSLN 210 (461)
Q Consensus 199 ~Le~L~L~~c~~ 210 (461)
.|+.|.|.++..
T Consensus 96 ~L~~L~Ls~N~l 107 (168)
T 2ell_A 96 NLTHLNLSGNKL 107 (168)
T ss_dssp TCCEEECBSSSC
T ss_pred CCCEEeccCCcc
Confidence 777777777654
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.46 E-value=0.00024 Score=72.55 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=104.7
Q ss_pred hCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc-ccCCCC
Q 012533 121 MRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP-DFSICP 198 (461)
Q Consensus 121 ~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp 198 (461)
..+++.|++... ....+|..++ ++|++|+|+...-..+| ..+++|+.|+|++.. .+ + -+ +.
T Consensus 58 ~~~L~~L~Ls~n---------~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l--~~ 120 (571)
T 3cvr_A 58 INQFSELQLNRL---------NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPEL--PA 120 (571)
T ss_dssp HTTCSEEECCSS---------CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCC--CT
T ss_pred cCCccEEEeCCC---------CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchh--hc
Confidence 358899888664 1234776554 78999999832111344 457999999999887 54 3 22 23
Q ss_pred ccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEe
Q 012533 199 VLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDI 278 (461)
Q Consensus 199 ~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~ 278 (461)
+|+.|.|.++.. ..+.. ..++|+.|.+.++... +... ..++|++|.++++....++. -.++|+.+.+..
T Consensus 121 ~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~---~lp~---~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~ 189 (571)
T 3cvr_A 121 SLKHLDVDNNQL-TMLPE---LPALLEYINADNNQLT---MLPE---LPTSLEVLSVRNNQLTFLPE-LPESLEALDVST 189 (571)
T ss_dssp TCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCS---CCCC---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCS
T ss_pred CCCEEECCCCcC-CCCCC---cCccccEEeCCCCccC---cCCC---cCCCcCEEECCCCCCCCcch-hhCCCCEEECcC
Confidence 999999998765 33332 5678999999877542 1111 46789999998765443222 115677666655
Q ss_pred eeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEec
Q 012533 279 DYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIRE 346 (461)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 346 (461)
+.-..... . .. .+....+.++.|.|+.+.+. .+.. .+..+++|+.|+|..+.
T Consensus 190 N~L~~lp~--~-~~--~L~~~~~~L~~L~Ls~N~l~-------~lp~----~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 190 NLLESLPA--V-PV--RNHHSEETEIFFRCRENRIT-------HIPE----NILSLDPTCTIILEDNP 241 (571)
T ss_dssp SCCSSCCC--C-C----------CCEEEECCSSCCC-------CCCG----GGGGSCTTEEEECCSSS
T ss_pred CCCCchhh--H-HH--hhhcccccceEEecCCCcce-------ecCH----HHhcCCCCCEEEeeCCc
Confidence 42110000 0 00 11222233377777776555 2211 22236677777776553
No 106
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.44 E-value=4e-05 Score=76.14 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=37.6
Q ss_pred CccccCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhcc
Q 012533 14 KKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWAS 54 (461)
Q Consensus 14 ~~D~is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~~ 54 (461)
..|.|+.||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999976544
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.44 E-value=9.8e-05 Score=73.56 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=29.4
Q ss_pred CCceEEEEecchhhccccchhhhhccccccCC-CCCCeeEEEEEEeccCcchhhHHhhcCCCCceeEEEee
Q 012533 301 TNLKSLYLSCGTIYALGEAYRHLYDAHQYFLP-TFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 301 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~lL~~~P~Le~L~l~~~ 370 (461)
++++.|.++...+. .+| .+.+|+.|++..+... .+.. .+++|++|++...
T Consensus 317 ~~L~~L~Ls~N~l~---------------~lp~~~~~L~~L~L~~N~l~--~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 317 PSLEELNVSNNKLI---------------ELPALPPRLERLIASFNHLA--EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp TTCCEEECCSSCCS---------------CCCCCCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSS
T ss_pred CcCCEEECCCCccc---------------cccccCCcCCEEECCCCccc--cccc---hhhhccEEECCCC
Confidence 36777777765444 222 2467888887655321 2222 3578888888664
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.38 E-value=7e-05 Score=63.48 Aligned_cols=133 Identities=14% Similarity=-0.065 Sum_probs=67.7
Q ss_pred CcccEEEeccc-cc-ccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeecCCCC-CceeEeecccccEEEE
Q 012533 154 ETLEILKLETD-FV-FKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSLNFDW-DADISISSQTLKRLNL 229 (461)
Q Consensus 154 ~~L~~L~L~~~-~~-~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~~~~~-~~~l~i~~~~L~~L~l 229 (461)
++|++|.|+.. .. -.+|.....+++|+.|+|.++. .+-..+..++.|+.|.+.++.. .. .....-..++|+.|.+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCC-CSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcC-chHHHHHHhhCCCCCEEec
Confidence 56777777722 11 1344444667777777777766 3323566677777777777654 11 1111111445555555
Q ss_pred eecccccccCceeEEEecCCceEEEEecceeceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEe
Q 012533 230 MIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLS 309 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 309 (461)
.++........ ..+..+++|+.+.+..+.-.+. .......+..+++++.|.++
T Consensus 103 s~N~l~~~~~~----------------------~~l~~l~~L~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 103 SGNKLKDISTL----------------------EPLKKLECLKSLDLFNCEVTNL-----NDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp BSSSCCSSGGG----------------------GGGSSCSCCCEEECCSSGGGTS-----TTHHHHHHTTCSSCCEETTE
T ss_pred cCCccCcchhH----------------------HHHhcCCCCCEEEeeCCcCcch-----HHHHHHHHHhCccCcEecCC
Confidence 54432110000 1223445555554443311100 00123477788999999888
Q ss_pred cchhh
Q 012533 310 CGTIY 314 (461)
Q Consensus 310 ~~~~~ 314 (461)
.....
T Consensus 156 ~n~~~ 160 (168)
T 2ell_A 156 DREDQ 160 (168)
T ss_dssp ETTSC
T ss_pred CCChh
Confidence 77655
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.38 E-value=0.00013 Score=66.30 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=74.9
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.+++.|.+... ....++. .+..+++|++|+|+. ......+.....+++|++|+|.+.. .+-. .+..
T Consensus 35 ~~l~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQST---------GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTS---------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCEEEccCC---------CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc
Confidence 35677776543 1222332 344578899999982 2221122234678899999998887 5432 7788
Q ss_pred CCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCCceEEEEeccee
Q 012533 197 CPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTL 260 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 260 (461)
++.|+.|.|.++.. ..+..-.+ ..++|+.|.+.++....... ...-..++|++|.+.+...
T Consensus 106 l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 106 LTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred cCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEECCCCcC
Confidence 89999999988754 22211111 25788888887664311100 0011347888888877644
No 110
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.36 E-value=4.6e-05 Score=64.87 Aligned_cols=91 Identities=13% Similarity=-0.033 Sum_probs=59.2
Q ss_pred cccCCCcccccCcccEEEecc--cccccCCCCcccCcccceEEeceee-cCCc---ccCC----CCccceEEEEeecCCC
Q 012533 143 PVELPDCIYNSETLEILKLET--DFVFKSPSSGICFPRVKKFHVEIYK-PNMP---DFSI----CPVLEDLSIDYSLNFD 212 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~--~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~---lls~----cp~Le~L~L~~c~~~~ 212 (461)
...+|..-.....|++|+|+. ..+.++. ...++++|++|+|++|. .+|. -++. ||.|++|+|.+|..+.
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 345665444456799999982 1221111 22578999999999998 5443 3333 7899999999998743
Q ss_pred CCceeEe-ecccccEEEEeeccc
Q 012533 213 WDADISI-SSQTLKRLNLMIGGP 234 (461)
Q Consensus 213 ~~~~l~i-~~~~L~~L~l~~~~~ 234 (461)
+.....+ .+++|++|.+.+|..
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTT
T ss_pred HHHHHHHhcCCCCCEEECCCCCC
Confidence 3211122 378999999988754
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.21 E-value=0.00019 Score=70.84 Aligned_cols=39 Identities=26% Similarity=0.539 Sum_probs=36.3
Q ss_pred CCccccCCCChHHHHHHHcCCChHhHhhhcccchhhHHH
Q 012533 13 NKKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLV 51 (461)
Q Consensus 13 ~~~D~is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~l 51 (461)
-..|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 356899999999999999999999999999999999864
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.20 E-value=0.00041 Score=62.06 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=58.4
Q ss_pred cccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeE
Q 012533 143 PVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADIS 218 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~ 218 (461)
...+|..+ .++|++|.|+. ...-..|.....+++|+.|+|.+.. ..-. .+..++.|+.|.|.++.. ..+..-.
T Consensus 31 l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TVLPSAV 107 (229)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC-CccChhH
Confidence 34555543 26788888872 2111123334577888888888777 4322 677888888888887653 2111101
Q ss_pred e-ecccccEEEEeecccccccCceeEEEecCCceEEEEecc
Q 012533 219 I-SSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDG 258 (461)
Q Consensus 219 i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~ 258 (461)
+ ..++|+.|.+.++...... .. ....++|+.|.+.+.
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp--~~-~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELP--RG-IERLTHLTHLALDQN 145 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCC--TT-GGGCTTCSEEECCSS
T ss_pred hCcchhhCeEeccCCcccccC--cc-cccCCCCCEEECCCC
Confidence 1 2456666666554331100 00 023455666666554
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.20 E-value=4e-05 Score=63.61 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=39.3
Q ss_pred cCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecC
Q 012533 145 ELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 145 ~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~ 210 (461)
.+|..+..+++|++|+++...-... .....+++|++|+|++.. .+.. .+..+|.|+.|.+.++..
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC
Confidence 4565555677777777772111111 333567777777777777 5534 556677777777777653
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.15 E-value=8.2e-05 Score=61.65 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=16.3
Q ss_pred ccCcccceEEeceee-cCCcccCCCCccceEEEEeec
Q 012533 174 ICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSL 209 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~ 209 (461)
..+++|+.|+|.+.. .+-..+..++.|+.|.+.++.
T Consensus 39 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC
T ss_pred hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc
Confidence 444555555555444 221234444555555554443
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.12 E-value=0.0012 Score=68.17 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=38.4
Q ss_pred cccCcccEEEecccccccCCC-CcccCcccceEEeceee-cC-Cc-ccCCCCccceEEEEeecCCCCCceeEee-ccccc
Q 012533 151 YNSETLEILKLETDFVFKSPS-SGICFPRVKKFHVEIYK-PN-MP-DFSICPVLEDLSIDYSLNFDWDADISIS-SQTLK 225 (461)
Q Consensus 151 ~~~~~L~~L~L~~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~-~~-lls~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~ 225 (461)
.++++|++|+|+...-..+|+ ...++++|++|+|++.. .+ .. .+.++++|++|.|.++.. ..+....+. .++|+
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLK 151 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCC
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC-CCCChhhhhcCcccC
Confidence 336666666666211111222 23456666666666655 32 11 556666666666666543 222211121 34555
Q ss_pred EEEEeec
Q 012533 226 RLNLMIG 232 (461)
Q Consensus 226 ~L~l~~~ 232 (461)
.|.+.++
T Consensus 152 ~L~Ls~N 158 (635)
T 4g8a_A 152 ELNVAHN 158 (635)
T ss_dssp EEECCSS
T ss_pred eeccccC
Confidence 5555544
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.11 E-value=0.00012 Score=72.31 Aligned_cols=38 Identities=26% Similarity=0.546 Sum_probs=35.5
Q ss_pred CccccCCCChH----HHHHHHcCCChHhHhhhcccchhhHHH
Q 012533 14 KKDRISCMPDS----ILCHILSFLSTEDAVRTSILSSRWKLV 51 (461)
Q Consensus 14 ~~D~is~LPd~----vL~~Ils~L~~rd~~rts~lSrrWr~l 51 (461)
..|.|+.||+| |+.+||++|+++++++++.|||+|+.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46899999999 999999999999999999999999953
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.10 E-value=0.0017 Score=66.27 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=33.1
Q ss_pred ccceEEeceee-cCCc-ccCCCCccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEE
Q 012533 178 RVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHV 255 (461)
Q Consensus 178 ~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l 255 (461)
+|+.|+|++.. .+ + - .++.|+.|.|.++.. ..+.. ..++|+.|.+.++... +... +. ++|++|.+
T Consensus 121 ~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~---~lp~--l~-~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLT---FLPE--LP-ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCS---CCCC--CC-TTCCEEEC
T ss_pred CCCEEECCCCcCCC-CCC--cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCC---Ccch--hh-CCCCEEEC
Confidence 56666665555 32 2 2 455666666655543 21111 2355666666554331 1111 11 56666666
Q ss_pred eccee
Q 012533 256 NDGTL 260 (461)
Q Consensus 256 ~~~~~ 260 (461)
++...
T Consensus 188 s~N~L 192 (571)
T 3cvr_A 188 STNLL 192 (571)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 55433
No 118
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.07 E-value=0.00023 Score=68.40 Aligned_cols=127 Identities=14% Similarity=0.022 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCcCC-cceEEEEeccCC-CCc-chHHHHHHHHHh-CCceEEEEEccCCCCCCCCCc-cccCCCcccccC
Q 012533 80 FENFVDRMLLSNSVS-ISKFSLHCQKKP-RYL-SRLKFWVALAIM-RNVHEIEVNLPVDDPFEEGYE-PVELPDCIYNSE 154 (461)
Q Consensus 80 ~~~~v~~~L~~~~~~-i~~l~l~~~~~~-~~~-~~~~~wl~~a~~-~~v~~L~l~~~~~~~~~~~~~-~~~lp~~l~~~~ 154 (461)
+.+.+.++|...... |+.+.+...... ... ..+..++..+.. .+++.|.+........+-.|. ...++..+-.++
T Consensus 93 ~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P 172 (362)
T 2ra8_A 93 GVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP 172 (362)
T ss_dssp TCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT
T ss_pred HHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC
Confidence 344566677666665 788877643211 111 233344432222 689999875421000000000 112333344578
Q ss_pred cccEEEecccccccCCCCcccCcccceEEeceee-cCCc----ccCCCCccceEEEEee
Q 012533 155 TLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP----DFSICPVLEDLSIDYS 208 (461)
Q Consensus 155 ~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~----lls~cp~Le~L~L~~c 208 (461)
+|+.|.|.+..+..+++ ...++|++|.|..+. ..+. ..+.+|+|+.|.|..+
T Consensus 173 ~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~ 229 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG 229 (362)
T ss_dssp TCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECB
T ss_pred CCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecc
Confidence 88888887433333443 247888888887666 4432 2347888888888643
No 119
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.05 E-value=8.7e-05 Score=69.85 Aligned_cols=148 Identities=11% Similarity=0.009 Sum_probs=82.7
Q ss_pred CCceEEEEEccCCCCCCCCCcc--ccCC-CcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCC--c--
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEP--VELP-DCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNM--P-- 192 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~--~~lp-~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~--~-- 192 (461)
.++++|++.... ... ..++ ..+..+++|++|+|+. ......|.....+++|++|+|++.. .++ .
T Consensus 117 ~~L~~L~Ls~n~-------i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (310)
T 4glp_A 117 LALSSLRLRNVS-------WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA 189 (310)
T ss_dssp BCCSSCEEESCC-------CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT
T ss_pred CCCCEEEeeccc-------ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH
Confidence 578888887642 110 0011 1234578899999982 2222222344688999999999887 442 1
Q ss_pred --ccCCCCccceEEEEeecCCCCCcee----EeecccccEEEEeecccccccCceeEE--EecCCceEEEEecceeceee
Q 012533 193 --DFSICPVLEDLSIDYSLNFDWDADI----SISSQTLKRLNLMIGGPIVFANEHQAT--IEAPKLEHLHVNDGTLVSYL 264 (461)
Q Consensus 193 --lls~cp~Le~L~L~~c~~~~~~~~l----~i~~~~L~~L~l~~~~~~~~~~~~~~~--i~ap~L~~L~l~~~~~~~~~ 264 (461)
.+..+|.|++|.|.+|.. ..+... .-..++|+.|.+.++..... .+..+. ...|+|++|.+++.....++
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhccCcCcCCEEECCCCCCCchh
Confidence 456889999999998864 221221 01247888888876654211 011111 11268888888876544322
Q ss_pred eeCCCCceEEEEEe
Q 012533 265 VYELHSLCDARLDI 278 (461)
Q Consensus 265 l~~~~~L~~~~i~~ 278 (461)
-.-.++|+.+.+..
T Consensus 268 ~~~~~~L~~L~Ls~ 281 (310)
T 4glp_A 268 KGLPAKLRVLDLSS 281 (310)
T ss_dssp SCCCSCCSCEECCS
T ss_pred hhhcCCCCEEECCC
Confidence 21224444444443
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.93 E-value=0.0012 Score=63.09 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=54.6
Q ss_pred cccCCCcccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc---ccCCCCccceEEEEeecCCCCCcee
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP---DFSICPVLEDLSIDYSLNFDWDADI 217 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~---lls~cp~Le~L~L~~c~~~~~~~~l 217 (461)
...+|..+ ..++++|+|+.-.-..+|+. ..++++|++|+|++.. .+.+ .+.+++.|+++.+..+.. +..+
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~---l~~l 95 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN---LLYI 95 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT---CCEE
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc---cccc
Confidence 34566554 35788999883211123443 3678899999998876 4432 678888888877777654 3333
Q ss_pred E---e-ecccccEEEEeeccc
Q 012533 218 S---I-SSQTLKRLNLMIGGP 234 (461)
Q Consensus 218 ~---i-~~~~L~~L~l~~~~~ 234 (461)
. + ..++|+.|.+.++..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECC
T ss_pred Cchhhhhcccccccccccccc
Confidence 2 1 246777777776543
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.87 E-value=0.0011 Score=58.08 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=48.4
Q ss_pred cccCCCcccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCceeE
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADIS 218 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l~ 218 (461)
...+|..+ .++|++|+|+...-..+++. ...+++|++|+|.+.. .+-. .+..++.|++|.|.++.. ..+..-.
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~ 95 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGV 95 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHhH
Confidence 34455433 34788888872211122332 3567888888888776 4322 677788888888887654 2111101
Q ss_pred e-ecccccEEEEeec
Q 012533 219 I-SSQTLKRLNLMIG 232 (461)
Q Consensus 219 i-~~~~L~~L~l~~~ 232 (461)
+ ..++|+.|.+.++
T Consensus 96 ~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 96 FDKLTQLKELALNTN 110 (208)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcCccCCCEEEcCCC
Confidence 1 1356666666544
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.84 E-value=0.00023 Score=60.83 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=39.3
Q ss_pred HhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEecc-Cc-chhhHHhhcCCCCceeEEEee
Q 012533 296 LLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREY-GW-WILPIIFNCSPNLESFVLIMD 370 (461)
Q Consensus 296 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~-~~l~~lL~~~P~Le~L~l~~~ 370 (461)
++..+++++.|.++...+. .+.... .+..+++|++|++..+.. .. ..-..++..+|+|+.|++...
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-------~~~~~~--~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-------ELGDLD--PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-------CGGGGG--GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhhcCCCCCEEECCCCcCC-------cchhhH--hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 3456777888888776554 222110 334567777777765532 11 112235778999999988764
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.79 E-value=0.00026 Score=73.23 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=27.7
Q ss_pred ccCcccEEEecc-cc-cc-cCCCCcccCcccceEEeceee-cCCc-ccCCCCccceEEEEee
Q 012533 152 NSETLEILKLET-DF-VF-KSPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYS 208 (461)
Q Consensus 152 ~~~~L~~L~L~~-~~-~~-~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c 208 (461)
.+++|+.|.++. .. .. ..+.......+|+.|++.... .... .+..++.|+.+.+..+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTS
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhc
Confidence 456677777661 11 00 011122345566666665554 2222 4555666666666544
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.78 E-value=0.0012 Score=58.98 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=78.5
Q ss_pred CCceEEEEEccCCCCCCCCCccccC-CCcccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVEL-PDCIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.+++.|.+.... ...+ |..+..+.+|++|.|+...-..+|+. ...+++|+.|+|++.. ..-. .+..
T Consensus 40 ~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQ---------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp TTCSEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEEcCCCc---------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 578888876641 2233 44455688999999993211223433 3678999999999888 5432 7889
Q ss_pred CCccceEEEEeecCCCCCceeEeecccccEEEEeecccccccCceeEEEecCCceEEEEecce
Q 012533 197 CPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGT 259 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 259 (461)
++.|+.|.|.++.. ..+..---..++|+.|.+.++....... ...-..++|+.|.+.+..
T Consensus 111 l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccCCcc-cccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCC
Confidence 99999999998765 2221111235789999998764311100 001134677777777654
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.75 E-value=0.001 Score=59.01 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=47.1
Q ss_pred cccCCCcccccCcccEEEecccccccCCC-CcccCcccceEEeceee-cCC-c-ccCCCCccceEEEEeecCCCCCceeE
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPS-SGICFPRVKKFHVEIYK-PNM-P-DFSICPVLEDLSIDYSLNFDWDADIS 218 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~~-~-lls~cp~Le~L~L~~c~~~~~~~~l~ 218 (461)
...+|..+. ++|+.|.|+...-..+++ ....+++|+.|+|.+.. .+- . .+..++.|+.|.|.++.. ..+..-.
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 99 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSL 99 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhH
Confidence 345555443 567788877211111222 34567788888887776 432 2 677778888888877654 1111100
Q ss_pred e-ecccccEEEEeec
Q 012533 219 I-SSQTLKRLNLMIG 232 (461)
Q Consensus 219 i-~~~~L~~L~l~~~ 232 (461)
+ ..++|+.|.+.++
T Consensus 100 f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 100 FEGLFSLQLLLLNAN 114 (220)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCC
Confidence 1 1355666666544
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.68 E-value=0.0016 Score=57.11 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=60.4
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcc-cccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCI-YNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.++++|++... ....+|... ..+.+|++|+|+...-..+|+. ...+++|++|+|.+.. .+-. .+..
T Consensus 28 ~~l~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 28 AQTTYLDLETN---------SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp TTCSEEECCSS---------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEEcCCC---------ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 36777777553 123445443 3578899999883211123333 3578899999998887 5332 6788
Q ss_pred CCccceEEEEeecCCCCCceeEe-ecccccEEEEeec
Q 012533 197 CPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIG 232 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~ 232 (461)
++.|++|.+.++.. ..+..-.+ ..++|+.|.+.++
T Consensus 99 l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 99 LTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCC
Confidence 89999999988754 21111001 1356666666554
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.68 E-value=0.0015 Score=57.93 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=63.7
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEec-ccccccCCCCcccCcccceEEeceee-cCC-c-ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLE-TDFVFKSPSSGICFPRVKKFHVEIYK-PNM-P-DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~-~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~-~-lls~ 196 (461)
.++++|.+... ....+|. .+..+.+|++|.|+ .......|.....+++|++|+|++.. ..- . ++..
T Consensus 32 ~~l~~L~l~~n---------~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 32 ETITEIRLEQN---------TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp TTCCEEECCSS---------CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCEEECCCC---------cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 46777777553 1234444 34447899999998 22222234455788999999999888 532 2 7888
Q ss_pred CCccceEEEEeecCCCCCceeEe-ecccccEEEEeecc
Q 012533 197 CPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGG 233 (461)
Q Consensus 197 cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~ 233 (461)
++.|+.|.|.++.. ..+..-.+ ..++|+.|.+.++.
T Consensus 103 l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 103 LFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCC-CEeCHHHcCCCCCCCEEECCCCc
Confidence 99999999998764 22111011 13566666666543
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.60 E-value=0.0016 Score=57.86 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=45.4
Q ss_pred ccCcccceEEeceee-cCC-c-ccCCCCccceEEEEeecCCCCCceeEe-ecccccEEEEeecccccccCceeEEEecCC
Q 012533 174 ICFPRVKKFHVEIYK-PNM-P-DFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKRLNLMIGGPIVFANEHQATIEAPK 249 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~-~-lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~i~ap~ 249 (461)
..+++|+.|+|.+.. .+- . .+..++.|+.|.|.++.. ..+..-.+ ..++|++|.+.++...... .. .....++
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~-~~~~l~~ 130 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRITCVG-ND-SFIGLSS 130 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCGGGGTTCSSCCEEECTTSCCCCBC-TT-SSTTCTT
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc-CccCHhHhcCCcCCCEEECCCCcCCeEC-Hh-HcCCCcc
Confidence 345555555555544 221 1 445555555555555432 11111001 1345555555443321100 00 0013466
Q ss_pred ceEEEEecceecee---eeeCCCCceEEEEEee
Q 012533 250 LEHLHVNDGTLVSY---LVYELHSLCDARLDID 279 (461)
Q Consensus 250 L~~L~l~~~~~~~~---~l~~~~~L~~~~i~~~ 279 (461)
|+.|.+.+...... .+..+++|+.+.+...
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 66666665544332 2345666776666554
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.59 E-value=0.00015 Score=63.38 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=26.8
Q ss_pred cccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc-ccCCCCccceEEEEeec
Q 012533 149 CIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 149 ~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~ 209 (461)
.+..+++|++|+|+...-..+| ....+++|+.|+|.+.. ..-. .+..+|.|+.|.+.++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 3444555555555511100122 33445555555555555 3111 33444555555555553
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.57 E-value=0.00037 Score=59.51 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=31.5
Q ss_pred cccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCcccCCCCccceEEEEeec
Q 012533 151 YNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMPDFSICPVLEDLSIDYSL 209 (461)
Q Consensus 151 ~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~lls~cp~Le~L~L~~c~ 209 (461)
..+.+|+.|.++...-..+|.....+++|+.|+|++.. .+-..+..++.|+.|.|.++.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCc
Confidence 34666777777621111123222333477777777665 321255666777777776664
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.57 E-value=7.8e-05 Score=65.16 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=22.0
Q ss_pred ccCcccceEEeceee-cCCc-ccCCCCccceEEEEeecC
Q 012533 174 ICFPRVKKFHVEIYK-PNMP-DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 174 ~~~~~L~~L~L~~~~-~~~~-lls~cp~Le~L~L~~c~~ 210 (461)
..+++|++|+|++.. .+ + .+..++.|+.|.+.++..
T Consensus 45 ~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEE
T ss_pred hcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCc
Confidence 456667777776666 33 3 455566666666666643
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.29 E-value=0.00011 Score=71.15 Aligned_cols=73 Identities=22% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccCc---chhhHHhhcCCCCceeEEE
Q 012533 292 HALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGW---WILPIIFNCSPNLESFVLI 368 (461)
Q Consensus 292 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~l~~lL~~~P~Le~L~l~ 368 (461)
.+...+..+++++.|.|+.+.+...+.. .+.. .+....+|++|+|..+.... ..+...++.+|+|++|+|.
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--~L~~----~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLE--LLAA----QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHH--HHHH----HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHH--HHHH----HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 4566667888999999988766510000 0111 34445689999988775433 3466777788999999987
Q ss_pred ee
Q 012533 369 MD 370 (461)
Q Consensus 369 ~~ 370 (461)
..
T Consensus 248 ~N 249 (372)
T 3un9_A 248 FN 249 (372)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.29 E-value=0.0017 Score=63.42 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=8.2
Q ss_pred ccCCCCccceEEEE
Q 012533 193 DFSICPVLEDLSID 206 (461)
Q Consensus 193 lls~cp~Le~L~L~ 206 (461)
.+.+|+.|+.+.|.
T Consensus 221 aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 221 AFLKTSQLKTIEIP 234 (401)
T ss_dssp TTTTCTTCCCEECC
T ss_pred HhhCCCCCCEEecC
Confidence 55566666666554
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.22 E-value=0.0024 Score=61.27 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=26.9
Q ss_pred ccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCC-c-ccCCCCccceEEEEeec
Q 012533 152 NSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNM-P-DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 152 ~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~-~-lls~cp~Le~L~L~~c~ 209 (461)
.+.+|++|.|+. ......+.....+++|+.|+|++.. ..- . .+..++.|+.|.|.++.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence 455566666551 1111111123455556666665554 221 1 45555666666665543
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.19 E-value=0.0033 Score=55.72 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=15.6
Q ss_pred ccceEEeceee-cCC--c-ccCCCCccceEEEEeec
Q 012533 178 RVKKFHVEIYK-PNM--P-DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 178 ~L~~L~L~~~~-~~~--~-lls~cp~Le~L~L~~c~ 209 (461)
.++.|+|.+.. .+- . .+..++.|+.|.|.++.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 68 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK 68 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc
Confidence 34555555544 221 1 45555556655555543
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.95 E-value=0.0063 Score=52.63 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=42.6
Q ss_pred cccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecC
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~ 210 (461)
...+|..++ .+|++|.|+...-..+|.....+++|+.|+|++.. .+-. .+..++.|++|.|.++..
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 345555443 57888888722111344455678888888888777 4432 677888888888887653
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.95 E-value=0.0087 Score=50.75 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=40.0
Q ss_pred ccCCCcccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecC
Q 012533 144 VELPDCIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 144 ~~lp~~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~ 210 (461)
..+|..+. ++|++|.++...-..+|+. ...+++|++|+|.+.. .+-. .+..++.|+.|.+.++..
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 34554332 5788888872211122332 3567888888888777 4322 567888888888877654
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.87 E-value=0.0058 Score=52.77 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=43.9
Q ss_pred cccCCCcccccCcccEEEecccccccCCCC--cccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecC
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKSPSS--GICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLN 210 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~--~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~ 210 (461)
...+|..++. +|++|.|+...-..+++. ...+++|++|+|++.. .+-. .+...+.|+.|.|.++..
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 3456655443 788888883211122332 4678889999998887 5432 778888999999888654
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.80 E-value=0.0062 Score=62.24 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=47.5
Q ss_pred CceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc-ccCCCCcc
Q 012533 123 NVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP-DFSICPVL 200 (461)
Q Consensus 123 ~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~-lls~cp~L 200 (461)
.++.|.+... ....+|. +..+.+|+.|+|+...-..+|.....+++|+.|+|++.. .+ + -+..++.|
T Consensus 442 ~L~~L~Ls~n---------~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHK---------DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRL 510 (567)
T ss_dssp TCSEEECTTS---------CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSC
T ss_pred CceEEEecCC---------CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCC
Confidence 4666666442 1234565 566777888877722111445555677777777777766 43 3 56677777
Q ss_pred ceEEEEeecC
Q 012533 201 EDLSIDYSLN 210 (461)
Q Consensus 201 e~L~L~~c~~ 210 (461)
+.|.|.++..
T Consensus 511 ~~L~Ls~N~l 520 (567)
T 1dce_A 511 QELLLCNNRL 520 (567)
T ss_dssp CEEECCSSCC
T ss_pred cEEECCCCCC
Confidence 7777777643
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.79 E-value=0.011 Score=51.12 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=57.5
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecccccccCC-CCcccCcccceEEeceee-cCC-c-ccCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSP-SSGICFPRVKKFHVEIYK-PNM-P-DFSIC 197 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~p-~~~~~~~~L~~L~L~~~~-~~~-~-lls~c 197 (461)
.++++|.+... ....+|..+....+|++|+|+...-..++ .....+++|++|+|++.. ..- . .+..+
T Consensus 31 ~~l~~L~L~~n---------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 31 RDVTELYLDGN---------QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp TTCCEEECCSS---------CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCCEEECCCC---------cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 46888887653 23467766777899999999922111223 234688999999999888 443 2 78889
Q ss_pred CccceEEEEeecC
Q 012533 198 PVLEDLSIDYSLN 210 (461)
Q Consensus 198 p~Le~L~L~~c~~ 210 (461)
+.|+.|.|.++..
T Consensus 102 ~~L~~L~L~~N~l 114 (193)
T 2wfh_A 102 KSLRLLSLHGNDI 114 (193)
T ss_dssp TTCCEEECCSSCC
T ss_pred CCCCEEECCCCCC
Confidence 9999999998754
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.35 E-value=0.025 Score=47.79 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=55.4
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcc-cccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCI-YNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.++++|.+... ....+|... ..+.+|++|+|+...-..+|+. ...+++|+.|+|.+.. .+-. .+..
T Consensus 28 ~~l~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 28 SSATRLELESN---------KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp TTCSEEECCSS---------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEEeCCC---------cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence 46788877653 123455544 4588999999983211223433 3689999999999988 5433 6788
Q ss_pred CCccceEEEEeecC
Q 012533 197 CPVLEDLSIDYSLN 210 (461)
Q Consensus 197 cp~Le~L~L~~c~~ 210 (461)
++.|+.|.+.++..
T Consensus 99 l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 99 LTQLKELALDTNQL 112 (177)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CcccCEEECcCCcc
Confidence 99999999998754
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.01 E-value=0.044 Score=53.28 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=15.6
Q ss_pred ccceEEecee-e-cCCcccCCCCccceEEEEe
Q 012533 178 RVKKFHVEIY-K-PNMPDFSICPVLEDLSIDY 207 (461)
Q Consensus 178 ~L~~L~L~~~-~-~~~~lls~cp~Le~L~L~~ 207 (461)
+|+++.|..- . .++-.+.+|+.|+.+.+..
T Consensus 158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CCCEEECCTTCCEECSSTTTTCTTCCEEECTT
T ss_pred CceEEEeCCCccEehHHHhhCcccCCeeecCC
Confidence 4555555431 1 2222566666666666643
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.84 E-value=0.0064 Score=64.14 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=26.3
Q ss_pred cccCcccEEEecccccccCCCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeec
Q 012533 151 YNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 151 ~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~ 209 (461)
..+.+|+.|+|+...-..+|+....+++|++|+|++.. . .+ -+..++.|+.|.|.++.
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 33455555555521111233333445555555555554 3 22 34555555555555544
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.82 E-value=0.023 Score=48.92 Aligned_cols=79 Identities=14% Similarity=0.054 Sum_probs=54.8
Q ss_pred CceEEEEEccCCCCCCCCCccccCCCc--ccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCC
Q 012533 123 NVHEIEVNLPVDDPFEEGYEPVELPDC--IYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 123 ~v~~L~l~~~~~~~~~~~~~~~~lp~~--l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
++++|.+... ....+|.. +...++|++|+|+. ......|.....+++|++|+|++.. .+-. .+..
T Consensus 30 ~l~~L~l~~n---------~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 30 HTTELLLNDN---------ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp TCSEEECCSC---------CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTT
T ss_pred CCCEEECCCC---------cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcC
Confidence 6777777653 12344432 45688999999992 2222224455789999999999988 4432 6888
Q ss_pred CCccceEEEEeecC
Q 012533 197 CPVLEDLSIDYSLN 210 (461)
Q Consensus 197 cp~Le~L~L~~c~~ 210 (461)
.+.|+.|.|.++..
T Consensus 101 l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 101 LHQLKTLNLYDNQI 114 (192)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 99999999998754
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.72 E-value=0.02 Score=53.89 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=62.4
Q ss_pred cCCceEEEEecceec---eeeeeCCCCceEEEEEeeee-cccCCccchhHHHHHhhcCCCce-EEEEecchhhccccchh
Q 012533 247 APKLEHLHVNDGTLV---SYLVYELHSLCDARLDIDYS-RVRSDPVRADHALQLLKKLTNLK-SLYLSCGTIYALGEAYR 321 (461)
Q Consensus 247 ap~L~~L~l~~~~~~---~~~l~~~~~L~~~~i~~~~~-~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~~~~ 321 (461)
+++|+++++.+.... ...+.++++|+++.+..... ++ ...+.+|++|+ .+.+.. .+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~----------~~aF~~~~~L~~~l~l~~-~l~------- 286 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIG----------QRVFSNCGRLAGTLELPA-SVT------- 286 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEEC----------TTTTTTCTTCCEEEEECT-TCC-------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceeh----------HHHhhCChhccEEEEEcc-cce-------
Confidence 789999999874332 23466788999887755311 11 22567899999 999987 333
Q ss_pred hhhccccccCCCCCCeeEEEEEEeccCcchh-hHHhhcCCCCceeEE
Q 012533 322 HLYDAHQYFLPTFSNLSFLEVRIREYGWWIL-PIIFNCSPNLESFVL 367 (461)
Q Consensus 322 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l-~~lL~~~P~Le~L~l 367 (461)
.+... .+..+.+|+.|.+... ....+ ...+..|++|++++.
T Consensus 287 ~I~~~---aF~~c~~L~~l~l~~n--~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 287 AIEFG---AFMGCDNLRYVLATGD--KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTT---TTTTCTTEEEEEECSS--CCCEECTTTTCTTCCCCEEEC
T ss_pred EEchh---hhhCCccCCEEEeCCC--ccCccchhhhcCCcchhhhcc
Confidence 22221 5566788888886432 22111 234678999998863
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=94.71 E-value=0.054 Score=45.52 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=39.7
Q ss_pred cccCCCcccccCcccEEEecccccccC-CCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeec
Q 012533 143 PVELPDCIYNSETLEILKLETDFVFKS-PSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~~~~~~~-p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~ 209 (461)
...+|..+. .+|++|+|+...-..+ |.....+++|++|+|++.. .+-. .+...+.|+.|.|.+..
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 344565443 6778888872211112 2334567888888888777 4322 66777888888887754
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.56 E-value=0.019 Score=58.62 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=18.0
Q ss_pred cccCcccceEEeceee-cCCc--ccCCCCccceEEEEeec
Q 012533 173 GICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 173 ~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~ 209 (461)
...+++|+.|+|++.. . .+ .+..++.|+.|.|.++.
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 3445555555555554 3 22 44555555555555543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.51 E-value=0.063 Score=45.32 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=37.0
Q ss_pred ccCCCcccccCcccEEEecccccccC-CCCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeec
Q 012533 144 VELPDCIYNSETLEILKLETDFVFKS-PSSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 144 ~~lp~~l~~~~~L~~L~L~~~~~~~~-p~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~ 209 (461)
..+|..+. .+|++|.|+...-..+ |.....+++|+.|+|++.. .+-. .+..++.|+.|.|.+..
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 44555443 6677777772111112 2234567777777777766 4322 56677777777777654
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.43 E-value=0.013 Score=61.72 Aligned_cols=100 Identities=10% Similarity=0.060 Sum_probs=69.9
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSIC 197 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~c 197 (461)
..++.|+|... ....+|..++.+.+|++|.|+. ... .+|.....+++|+.|+|++.. . .+ -+..+
T Consensus 224 ~~L~~L~Ls~n---------~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 224 QLWHALDLSNL---------QIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp CCCCEEECTTS---------CCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred CCCcEEECCCC---------CCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 45777776543 2347888888899999999983 222 456666789999999999888 6 33 67888
Q ss_pred CccceEEEEeecCCCCCceeEee-cccccEEEEeeccc
Q 012533 198 PVLEDLSIDYSLNFDWDADISIS-SQTLKRLNLMIGGP 234 (461)
Q Consensus 198 p~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~ 234 (461)
+.|+.|.|.++.. ..+..- +. .++|+.|.+.++..
T Consensus 293 ~~L~~L~L~~N~l-~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 293 FQLKYFYFFDNMV-TTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TTCSEEECCSSCC-CCCCSS-TTSCTTCCCEECTTSCC
T ss_pred CCCCEEECCCCCC-CccChh-hhcCCCccEEeCCCCcc
Confidence 9999999988754 222111 22 46788888876543
No 150
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=93.51 E-value=0.077 Score=50.60 Aligned_cols=80 Identities=10% Similarity=0.028 Sum_probs=55.1
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEecccccccCCC-CcccCcccceEEeceee-cC-Cc-ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLETDFVFKSPS-SGICFPRVKKFHVEIYK-PN-MP-DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~p~-~~~~~~~L~~L~L~~~~-~~-~~-lls~ 196 (461)
.+++.|.+... ....++. .+..+++|++|+|+...-..+++ ....+++|+.|+|.+.. .. .. .+..
T Consensus 64 ~~L~~L~L~~N---------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 64 TNLHSLLLSHN---------HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp TTCCEEECCSS---------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cccCEEECCCC---------cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence 46888887653 1233443 34568999999999321111232 34688999999999888 43 22 7888
Q ss_pred CCccceEEEEeecC
Q 012533 197 CPVLEDLSIDYSLN 210 (461)
Q Consensus 197 cp~Le~L~L~~c~~ 210 (461)
++.|+.|.|.++..
T Consensus 135 l~~L~~L~L~~N~l 148 (361)
T 2xot_A 135 MAQLQKLYLSQNQI 148 (361)
T ss_dssp CTTCCEEECCSSCC
T ss_pred cccCCEEECCCCcC
Confidence 99999999998764
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.41 E-value=0.14 Score=43.07 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCceEEEEEccCCCCCCCCCccccC-CCcccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVEL-PDCIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.+++.|.+... ....+ |..+....+|++|+|+...-..+|+. ...+++|++|+|.+.. .+-. .+..
T Consensus 33 ~~L~~L~Ls~N---------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNN---------QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103 (174)
T ss_dssp TTCSEEECCSS---------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEEeCCC---------CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhcc
Confidence 57788887653 13344 33445689999999993222224444 3689999999999888 5422 6888
Q ss_pred CCccceEEEEeecC
Q 012533 197 CPVLEDLSIDYSLN 210 (461)
Q Consensus 197 cp~Le~L~L~~c~~ 210 (461)
++.|+.|.|.+...
T Consensus 104 l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 104 LKSLTHIYLYNNPW 117 (174)
T ss_dssp CTTCSEEECCSSCB
T ss_pred ccCCCEEEeCCCCc
Confidence 99999999988654
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.25 E-value=0.16 Score=42.59 Aligned_cols=80 Identities=11% Similarity=0.107 Sum_probs=55.6
Q ss_pred CCceEEEEEccCCCCCCCCCccccC-CCcccccCcccEEEecccccccCCCC-cccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVEL-PDCIYNSETLEILKLETDFVFKSPSS-GICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~p~~-~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.+++.|.+... ....+ |..+....+|++|+|+...-..+|+. ...+++|+.|+|.+.. .+-. .+..
T Consensus 30 ~~l~~L~L~~N---------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 100 (170)
T 3g39_A 30 TTTQVLYLYDN---------QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDN 100 (170)
T ss_dssp TTCSEEECCSS---------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEEcCCC---------cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcC
Confidence 56778777653 23344 33445689999999993222234444 3689999999999888 5432 7889
Q ss_pred CCccceEEEEeecC
Q 012533 197 CPVLEDLSIDYSLN 210 (461)
Q Consensus 197 cp~Le~L~L~~c~~ 210 (461)
++.|+.|.|.+...
T Consensus 101 l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 101 LKSLTHIWLLNNPW 114 (170)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCCCCEEEeCCCCC
Confidence 99999999988643
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=92.21 E-value=0.075 Score=50.24 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=50.9
Q ss_pred cccCCCcccccCcccEEEecc-cccccCC-CCcccCcccceEEeceee-cCCc--ccCCCCccceEEEEeecCCCCCcee
Q 012533 143 PVELPDCIYNSETLEILKLET-DFVFKSP-SSGICFPRVKKFHVEIYK-PNMP--DFSICPVLEDLSIDYSLNFDWDADI 217 (461)
Q Consensus 143 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~p-~~~~~~~~L~~L~L~~~~-~~~~--lls~cp~Le~L~L~~c~~~~~~~~l 217 (461)
...+|. +....+|++|+|+. ..-..+| .....+++|+.|+|++.. .+-. .+..++.|+.|.|.+... ..+..-
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWK 98 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCST
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHH
Confidence 345676 66677888888863 2111223 234577888888888777 4322 677788888888877643 111110
Q ss_pred EeecccccEEEEeec
Q 012533 218 SISSQTLKRLNLMIG 232 (461)
Q Consensus 218 ~i~~~~L~~L~l~~~ 232 (461)
.....+|+.|.+.+.
T Consensus 99 ~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQGLSLQELVLSGN 113 (347)
T ss_dssp TTCSCCCCEEECCSS
T ss_pred HcccCCceEEEeeCC
Confidence 111223777776644
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.11 E-value=0.0013 Score=63.54 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=28.4
Q ss_pred CcccEEEecc-cc-cccCCCCcccCcccceEEeceee-cCC-c-----cc-CCCCccceEEEEeec
Q 012533 154 ETLEILKLET-DF-VFKSPSSGICFPRVKKFHVEIYK-PNM-P-----DF-SICPVLEDLSIDYSL 209 (461)
Q Consensus 154 ~~L~~L~L~~-~~-~~~~p~~~~~~~~L~~L~L~~~~-~~~-~-----ll-s~cp~Le~L~L~~c~ 209 (461)
.+|++|+|+. .. +.........+++|++|+|+++. .+. . .+ +.++.|++|+|.+|.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 5677777761 11 10011112345567777777666 332 1 12 456667777776664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=90.06 E-value=0.086 Score=44.99 Aligned_cols=22 Identities=32% Similarity=0.304 Sum_probs=11.5
Q ss_pred HHHHhhcCCCceEEEEecchhh
Q 012533 293 ALQLLKKLTNLKSLYLSCGTIY 314 (461)
Q Consensus 293 ~~~~l~~l~~l~~L~l~~~~~~ 314 (461)
+...+...++++.|.|+.+.+.
T Consensus 85 l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 85 LAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhCCCcCEEECcCCcCC
Confidence 4444555555666666555433
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.28 E-value=0.24 Score=47.70 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=23.9
Q ss_pred cCcccEEEecccccccCCCCcccCcccceEEece-ee-cCCcccCCCCccceEEE
Q 012533 153 SETLEILKLETDFVFKSPSSGICFPRVKKFHVEI-YK-PNMPDFSICPVLEDLSI 205 (461)
Q Consensus 153 ~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~-~~-~~~~lls~cp~Le~L~L 205 (461)
|.+|+.+.+.............++++|+.+.+.. +. .++..+..|+.|+.+.+
T Consensus 161 c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 161 CESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCC
T ss_pred cCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhhccccccceeec
Confidence 5666666664111100011124455666665532 22 22335566666666554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=87.84 E-value=0.16 Score=46.09 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=41.9
Q ss_pred HHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEEeccC------cchhhHHhhcCCCCceeE
Q 012533 295 QLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYG------WWILPIIFNCSPNLESFV 366 (461)
Q Consensus 295 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~l~~lL~~~P~Le~L~ 366 (461)
..+..+++|+.|.|+...+. .+.... .+..+ +|+.|.|..+... ......++..+|+|+.|+
T Consensus 190 ~~~~~l~~L~~L~Ls~N~i~-------~~~~l~--~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNELK-------SERELD--KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp THHHHSTTCCEEECTTSCCC-------SGGGGG--GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hHHhhCCCCCEEECCCCccC-------Cchhhh--hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 36678899999999988776 232211 33334 8888888765321 123457889999999885
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=86.65 E-value=0.61 Score=43.55 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=26.1
Q ss_pred cCCCcccc-cCcccEEEecccccccCCCCcccCcccc-eEEece-ee-cCCcccCCCCccceEEEE
Q 012533 145 ELPDCIYN-SETLEILKLETDFVFKSPSSGICFPRVK-KFHVEI-YK-PNMPDFSICPVLEDLSID 206 (461)
Q Consensus 145 ~lp~~l~~-~~~L~~L~L~~~~~~~~p~~~~~~~~L~-~L~L~~-~~-~~~~lls~cp~Le~L~L~ 206 (461)
.+|...|. |.+|+++.|......-.+....++++|+ .|.|.. +. .++-.+.+|++|+.|.+.
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEEC
T ss_pred eecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeC
Confidence 34443333 5555555554211100011224455555 555543 11 222245555555555553
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=82.39 E-value=1.6 Score=40.90 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=51.4
Q ss_pred CCceEEEEEccCCCCCCCCCccccCCC-cccccCcccEEEecc-cccccCCCCcccCcccceEEeceee-cCCc--ccCC
Q 012533 122 RNVHEIEVNLPVDDPFEEGYEPVELPD-CIYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK-PNMP--DFSI 196 (461)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~-~~~~--lls~ 196 (461)
.++++|.|...+ ....+|. .+..+.+|+.|+|+. ...-..|.....+++|+.|+|++.. .+-. ++..
T Consensus 31 ~~L~~L~l~~~n--------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 31 ENLTELYIENQQ--------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp SCCSEEECCSCS--------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred CCeeEEEccCCC--------CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 368888886311 2344553 345589999999992 2222122234789999999999887 5322 5555
Q ss_pred CCccceEEEEeecC
Q 012533 197 CPVLEDLSIDYSLN 210 (461)
Q Consensus 197 cp~Le~L~L~~c~~ 210 (461)
.+ |+.|.|.+...
T Consensus 103 ~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 103 LS-LQELVLSGNPL 115 (347)
T ss_dssp CC-CCEEECCSSCC
T ss_pred CC-ceEEEeeCCCc
Confidence 55 99999987543
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=81.75 E-value=0.35 Score=41.12 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=73.8
Q ss_pred HHHHHhhcCCCceEEEEecc-hhhccccchhhhhccccccCCCCCCeeEEEEEEeccC---cchhhHHhhcCCCCceeEE
Q 012533 292 HALQLLKKLTNLKSLYLSCG-TIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYG---WWILPIIFNCSPNLESFVL 367 (461)
Q Consensus 292 ~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~l~~lL~~~P~Le~L~l 367 (461)
.+..++...+++++|.|+.. .+...+. ..+.. .+....+|++|+|..+... ...+...++..++|++|+|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~--~~l~~----~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTL--KACAE----ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHH--HHHHH----HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHH--HHHHH----HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 56778888999999999876 5541000 01111 3445678999988876543 3346777888899999998
Q ss_pred EeeecCCCcccccCccCCccccccc--ccceEEEEE--E---eCCCCchHHHHHHHhcCcCCceEEEEe
Q 012533 368 IMDVNGPEYYVEAGWIEPQFVPYCL--QFNVKKIEI--L---YGDDDPLEPVKYLLKNCGVLDKMIFRY 429 (461)
Q Consensus 368 ~~~~~~~~~~~~~~w~~~~~~~~c~--~~~Lk~v~i--~---~g~~~e~~l~~~ll~~a~~Le~~~i~~ 429 (461)
....-+ ...... +.+.+ ..+|+.+.+ . -|......+++ .++..+.|+++.+..
T Consensus 101 ~~N~i~-----~~g~~~---l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 101 ESNFIS-----GSGILA---LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHF 160 (185)
T ss_dssp CSSCCC-----HHHHHH---HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCC
T ss_pred cCCcCC-----HHHHHH---HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccC
Confidence 764221 110000 11111 245888888 4 22233334554 556678899998865
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=70.77 E-value=2.4 Score=40.54 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=25.9
Q ss_pred ecCCceEEEEecce--eceeeeeCCCCceEEEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecch
Q 012533 246 EAPKLEHLHVNDGT--LVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGT 312 (461)
Q Consensus 246 ~ap~L~~L~l~~~~--~~~~~l~~~~~L~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 312 (461)
.|.+|+++.+-... .....+.++.+|+.+.+..... ...-+..+.+++.+.+....
T Consensus 332 ~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~-----------~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 332 GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRS-----------QWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHH-----------HHHTCBCCCCC---------
T ss_pred CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCcee-----------ehhhhhccCCCCEEEeCCCC
Confidence 35667777664321 1234566788888776654311 12334567788888776543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=66.30 E-value=8.7 Score=36.52 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=45.7
Q ss_pred cccCcccEEEeccc-ccccCCCCcccCcccceEEec-eee-cCCcccCCCCccceEEEEeecCCCCCceeEe-ecccccE
Q 012533 151 YNSETLEILKLETD-FVFKSPSSGICFPRVKKFHVE-IYK-PNMPDFSICPVLEDLSIDYSLNFDWDADISI-SSQTLKR 226 (461)
Q Consensus 151 ~~~~~L~~L~L~~~-~~~~~p~~~~~~~~L~~L~L~-~~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~ 226 (461)
..|.+|+.+.+... ... ......+|.+|+++.|. ++. -++-.+.+|.+|+++.|-.. +..+..-.. .|.+|+.
T Consensus 285 ~~c~~L~~i~l~~~i~~I-~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITEL-PESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCTTCCEEECCTTCCEE-CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCE
T ss_pred ccccccccccCCCccccc-CceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCE
Confidence 34888888888621 111 01123567888888884 344 44447888999998888431 111111111 2678888
Q ss_pred EEEee
Q 012533 227 LNLMI 231 (461)
Q Consensus 227 L~l~~ 231 (461)
+.+.+
T Consensus 362 i~~~~ 366 (394)
T 4gt6_A 362 IEYSG 366 (394)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 88764
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=58.03 E-value=12 Score=35.45 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=45.4
Q ss_pred cccCcccEEEecccccccCCCCcccCcccceEEece-ee-cCCcccCCCCccceEEEEeecCCCCCceeE---e-ecccc
Q 012533 151 YNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEI-YK-PNMPDFSICPVLEDLSIDYSLNFDWDADIS---I-SSQTL 224 (461)
Q Consensus 151 ~~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~-~~-~~~~lls~cp~Le~L~L~~c~~~~~~~~l~---i-~~~~L 224 (461)
+.|.+|+.+.+......--.....+|.+|++++|.. +. -++-.+.+|..|+++.|... +..+. . .|.+|
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-----LRKIGANAFQGCINL 368 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-----CCEECTTTBTTCTTC
T ss_pred cccccccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-----ccEehHHHhhCCCCC
Confidence 448888888886211110111235778888888843 33 44447888999998887431 22221 1 25788
Q ss_pred cEEEEee
Q 012533 225 KRLNLMI 231 (461)
Q Consensus 225 ~~L~l~~ 231 (461)
+.+.+-.
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 8888753
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=57.19 E-value=4.3 Score=36.61 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=18.8
Q ss_pred cCcccceEEeceee-cC--Cc--ccCCCCccceEEEEeec
Q 012533 175 CFPRVKKFHVEIYK-PN--MP--DFSICPVLEDLSIDYSL 209 (461)
Q Consensus 175 ~~~~L~~L~L~~~~-~~--~~--lls~cp~Le~L~L~~c~ 209 (461)
.+|+|++|+|++.. .+ .+ .+..+|+|+.|.|.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 45566666666555 33 22 44456666666665543
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=47.11 E-value=21 Score=33.40 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=33.6
Q ss_pred ccCcccEEEecccccccCCCCcccCcccceEEece--ee-cCCcccCCCCccceEEEE
Q 012533 152 NSETLEILKLETDFVFKSPSSGICFPRVKKFHVEI--YK-PNMPDFSICPVLEDLSID 206 (461)
Q Consensus 152 ~~~~L~~L~L~~~~~~~~p~~~~~~~~L~~L~L~~--~~-~~~~lls~cp~Le~L~L~ 206 (461)
.|.+|+.+.+.............+|.+|+++.+.+ +. -++-.+.+|.+|+.+.|-
T Consensus 261 ~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 261 NCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred eeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 37788888876211110011235778888888864 33 344477888888888874
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=34.39 E-value=82 Score=29.21 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=48.0
Q ss_pred ccccCcccEEEecc-cccccCCCCcccCcccceEEeceee--cCCcccCCCCccceEEEEeecCCCCCceeE----eecc
Q 012533 150 IYNSETLEILKLET-DFVFKSPSSGICFPRVKKFHVEIYK--PNMPDFSICPVLEDLSIDYSLNFDWDADIS----ISSQ 222 (461)
Q Consensus 150 l~~~~~L~~L~L~~-~~~~~~p~~~~~~~~L~~L~L~~~~--~~~~lls~cp~Le~L~L~~c~~~~~~~~l~----i~~~ 222 (461)
.+.|..|+.+.+.. .... -......+.+|+.+.+..-. .+...+.+|+.|+.+.+.... +..+. ..|.
T Consensus 236 f~~~~~L~~i~lp~~v~~I-~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~----i~~I~~~aF~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSI-GSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSA----IETLEPRVFMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECTTCCEE-CTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTT----CCEECTTTTTTCT
T ss_pred ccCCccceEEEcCCCccEe-Cccccceeehhccccccccceeccccccccccccccccccccc----cceehhhhhcCCC
Confidence 35588999998862 1111 11123578889998885433 333488999999999997642 22222 1257
Q ss_pred cccEEEEe
Q 012533 223 TLKRLNLM 230 (461)
Q Consensus 223 ~L~~L~l~ 230 (461)
+|+.+.+-
T Consensus 311 ~L~~i~lp 318 (379)
T 4h09_A 311 KLSSVTLP 318 (379)
T ss_dssp TCCEEECC
T ss_pred CCCEEEcC
Confidence 78888774
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.49 E-value=58 Score=23.98 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=9.0
Q ss_pred ccCCCCccceEEEEe
Q 012533 193 DFSICPVLEDLSIDY 207 (461)
Q Consensus 193 lls~cp~Le~L~L~~ 207 (461)
.+.+|.+|+++.+..
T Consensus 38 aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 38 MFSGCTALEKLILTG 52 (100)
T ss_dssp SSTTCTTCCCEEECC
T ss_pred HHhccCCccEEEEcC
Confidence 456666666666644
No 168
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=21.14 E-value=71 Score=17.24 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.0
Q ss_pred CCchHHHHHHHhcCcCCceE
Q 012533 406 DDPLEPVKYLLKNCGVLDKM 425 (461)
Q Consensus 406 ~~e~~l~~~ll~~a~~Le~~ 425 (461)
---..++.|+|+|.|+++-+
T Consensus 6 ilpsdimdfvlkntpsmqal 25 (31)
T 2agh_C 6 ILPSDIMDFVLKNTPSMQAL 25 (31)
T ss_dssp SSCHHHHHHHHHHSCCCCCC
T ss_pred cChHHHHHHHHhCChhHHHH
Confidence 33456888999999988754
Done!