Query 012534
Match_columns 461
No_of_seqs 313 out of 1877
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02851 3-hydroxyisobutyryl-C 100.0 1.4E-67 3E-72 540.8 39.9 354 64-460 40-397 (407)
2 PLN02988 3-hydroxyisobutyryl-C 100.0 1.4E-67 3E-72 539.4 37.2 347 66-455 9-359 (381)
3 KOG1684 Enoyl-CoA hydratase [L 100.0 4E-68 8.7E-73 517.0 30.5 357 64-461 36-393 (401)
4 PLN02157 3-hydroxyisobutyryl-C 100.0 1.6E-66 3.4E-71 533.3 37.9 354 65-461 36-393 (401)
5 PLN02874 3-hydroxyisobutyryl-C 100.0 5.1E-64 1.1E-68 514.8 36.2 352 63-460 8-363 (379)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 6.2E-64 1.3E-68 508.3 33.8 339 67-451 4-342 (342)
7 KOG1680 Enoyl-CoA hydratase [L 100.0 4.8E-55 1E-59 414.3 21.1 252 68-434 38-289 (290)
8 PRK05862 enoyl-CoA hydratase; 100.0 2.8E-53 6E-58 415.3 28.1 255 65-435 3-257 (257)
9 PRK05809 3-hydroxybutyryl-CoA 100.0 5.7E-53 1.2E-57 413.8 28.9 258 64-434 2-259 (260)
10 PRK05980 enoyl-CoA hydratase; 100.0 5.9E-53 1.3E-57 413.7 28.7 257 67-432 4-260 (260)
11 PLN02600 enoyl-CoA hydratase 100.0 5.3E-53 1.2E-57 411.8 27.9 250 74-435 2-251 (251)
12 PRK09076 enoyl-CoA hydratase; 100.0 1E-52 2.2E-57 411.5 29.7 254 67-434 4-257 (258)
13 PRK06494 enoyl-CoA hydratase; 100.0 7E-53 1.5E-57 412.9 28.6 255 64-434 2-258 (259)
14 PRK06127 enoyl-CoA hydratase; 100.0 7.8E-53 1.7E-57 414.7 28.7 261 64-435 9-269 (269)
15 PRK09674 enoyl-CoA hydratase-i 100.0 7.9E-53 1.7E-57 411.6 27.9 252 67-434 3-254 (255)
16 PRK07657 enoyl-CoA hydratase; 100.0 1.3E-52 2.7E-57 411.3 28.2 258 66-435 3-260 (260)
17 PRK08150 enoyl-CoA hydratase; 100.0 1.2E-52 2.5E-57 410.3 27.7 254 66-435 2-255 (255)
18 PRK07799 enoyl-CoA hydratase; 100.0 2.1E-52 4.7E-57 410.4 28.6 260 65-435 4-263 (263)
19 PRK06142 enoyl-CoA hydratase; 100.0 2.2E-52 4.8E-57 412.2 28.3 267 65-434 5-272 (272)
20 PLN02664 enoyl-CoA hydratase/d 100.0 3.6E-52 7.7E-57 411.2 29.4 260 73-434 14-274 (275)
21 PRK08138 enoyl-CoA hydratase; 100.0 2.7E-52 5.8E-57 409.2 28.2 255 65-434 6-260 (261)
22 PRK08139 enoyl-CoA hydratase; 100.0 4.1E-52 8.8E-57 408.9 29.3 258 63-434 8-265 (266)
23 PRK07658 enoyl-CoA hydratase; 100.0 3.7E-52 8E-57 407.4 28.2 254 67-434 3-256 (257)
24 PRK08140 enoyl-CoA hydratase; 100.0 5E-52 1.1E-56 407.6 29.0 259 64-434 2-261 (262)
25 PRK08252 enoyl-CoA hydratase; 100.0 4.5E-52 9.6E-57 406.1 28.5 250 67-434 4-253 (254)
26 PRK06563 enoyl-CoA hydratase; 100.0 2.3E-52 5.1E-57 408.3 26.1 252 69-434 2-254 (255)
27 TIGR02280 PaaB1 phenylacetate 100.0 4.8E-52 1E-56 406.3 28.1 254 69-434 2-255 (256)
28 PRK05995 enoyl-CoA hydratase; 100.0 3.7E-52 7.9E-57 408.5 27.1 260 64-435 2-262 (262)
29 PRK08258 enoyl-CoA hydratase; 100.0 1E-51 2.2E-56 408.4 29.1 258 67-434 18-276 (277)
30 PRK09245 enoyl-CoA hydratase; 100.0 9.1E-52 2E-56 406.6 28.3 261 67-434 4-265 (266)
31 TIGR03210 badI 2-ketocyclohexa 100.0 4.6E-52 9.9E-57 406.4 25.9 255 65-434 1-255 (256)
32 PRK07468 enoyl-CoA hydratase; 100.0 9.7E-52 2.1E-56 405.5 28.2 259 65-434 3-261 (262)
33 TIGR01929 menB naphthoate synt 100.0 6.2E-52 1.3E-56 406.1 26.3 257 66-434 2-258 (259)
34 PRK06143 enoyl-CoA hydratase; 100.0 1.2E-51 2.5E-56 403.5 27.9 250 65-426 5-254 (256)
35 PRK07659 enoyl-CoA hydratase; 100.0 1.5E-51 3.2E-56 403.8 27.6 255 65-434 5-259 (260)
36 PRK05981 enoyl-CoA hydratase; 100.0 1.5E-51 3.3E-56 405.0 27.8 263 64-434 2-265 (266)
37 PRK05674 gamma-carboxygeranoyl 100.0 9.2E-52 2E-56 406.2 26.0 260 64-434 3-263 (265)
38 PRK11423 methylmalonyl-CoA dec 100.0 9.8E-52 2.1E-56 405.1 26.1 257 64-434 2-260 (261)
39 PRK06144 enoyl-CoA hydratase; 100.0 1.8E-51 3.8E-56 403.6 27.6 255 64-434 6-261 (262)
40 PRK03580 carnitinyl-CoA dehydr 100.0 2E-51 4.3E-56 403.0 27.8 253 67-434 4-260 (261)
41 PRK07327 enoyl-CoA hydratase; 100.0 2.1E-51 4.6E-56 404.3 27.6 259 64-434 9-267 (268)
42 PRK07511 enoyl-CoA hydratase; 100.0 4E-51 8.7E-56 400.7 28.5 255 68-433 5-259 (260)
43 PLN02888 enoyl-CoA hydratase 100.0 4.7E-51 1E-55 401.0 28.6 259 60-434 3-263 (265)
44 PRK09120 p-hydroxycinnamoyl Co 100.0 5.5E-51 1.2E-55 402.6 29.1 253 64-424 6-261 (275)
45 PRK06210 enoyl-CoA hydratase; 100.0 2.8E-51 6.1E-56 404.4 26.3 267 63-434 2-271 (272)
46 PRK05864 enoyl-CoA hydratase; 100.0 7E-51 1.5E-55 402.2 28.0 266 64-435 7-275 (276)
47 PRK07396 dihydroxynaphthoic ac 100.0 5.7E-51 1.2E-55 402.2 27.2 258 64-434 11-268 (273)
48 PRK06495 enoyl-CoA hydratase; 100.0 8.4E-51 1.8E-55 397.7 27.9 254 65-434 3-256 (257)
49 PRK06688 enoyl-CoA hydratase; 100.0 5.6E-51 1.2E-55 399.5 26.3 254 66-434 5-258 (259)
50 PRK08260 enoyl-CoA hydratase; 100.0 1.1E-50 2.4E-55 404.6 26.9 275 65-435 3-278 (296)
51 PRK07509 enoyl-CoA hydratase; 100.0 2.7E-50 5.9E-55 395.3 28.9 260 65-433 2-261 (262)
52 PRK06072 enoyl-CoA hydratase; 100.0 3.3E-50 7.1E-55 391.6 28.7 247 68-435 2-248 (248)
53 PRK07260 enoyl-CoA hydratase; 100.0 3.2E-50 7E-55 393.2 27.5 252 66-426 2-253 (255)
54 PRK08259 enoyl-CoA hydratase; 100.0 2.5E-50 5.4E-55 393.7 25.2 247 68-430 5-251 (254)
55 TIGR03189 dienoyl_CoA_hyt cycl 100.0 4.8E-50 1E-54 390.9 26.9 246 68-434 3-250 (251)
56 PLN02921 naphthoate synthase 100.0 5.8E-50 1.3E-54 402.8 27.3 259 64-434 63-322 (327)
57 COG1024 CaiD Enoyl-CoA hydrata 100.0 8.2E-50 1.8E-54 390.8 27.6 253 65-432 4-257 (257)
58 PRK07854 enoyl-CoA hydratase; 100.0 6.8E-50 1.5E-54 388.1 25.6 241 68-434 2-242 (243)
59 PRK06023 enoyl-CoA hydratase; 100.0 7.3E-50 1.6E-54 389.8 25.5 243 67-423 4-249 (251)
60 PRK05870 enoyl-CoA hydratase; 100.0 6.3E-50 1.4E-54 389.8 24.2 244 67-424 4-248 (249)
61 PRK12478 enoyl-CoA hydratase; 100.0 6.9E-50 1.5E-54 398.7 24.7 271 64-437 3-283 (298)
62 PRK07938 enoyl-CoA hydratase; 100.0 1.6E-49 3.4E-54 387.0 26.2 245 70-430 5-249 (249)
63 PRK07827 enoyl-CoA hydratase; 100.0 4.3E-49 9.4E-54 386.3 27.8 255 65-433 5-259 (260)
64 PLN03214 probable enoyl-CoA hy 100.0 4.1E-49 8.8E-54 389.6 25.8 253 63-424 8-262 (278)
65 PRK07112 polyketide biosynthes 100.0 1.2E-48 2.5E-53 382.1 26.9 253 64-434 2-254 (255)
66 PRK08321 naphthoate synthase; 100.0 1.6E-48 3.4E-53 389.8 27.3 269 65-435 22-298 (302)
67 PF00378 ECH: Enoyl-CoA hydrat 100.0 5.2E-49 1.1E-53 382.4 23.0 244 70-426 2-245 (245)
68 PRK07110 polyketide biosynthes 100.0 4.6E-48 1E-52 376.7 26.5 244 65-423 4-247 (249)
69 PRK06190 enoyl-CoA hydratase; 100.0 8.6E-48 1.9E-52 376.3 26.6 246 64-423 2-250 (258)
70 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.3E-46 2.7E-51 400.1 25.3 260 65-436 259-549 (550)
71 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-46 3.7E-51 397.9 25.8 259 65-436 255-545 (546)
72 KOG1679 Enoyl-CoA hydratase [L 100.0 4.6E-46 1E-50 339.1 16.7 263 65-435 26-291 (291)
73 PRK05869 enoyl-CoA hydratase; 100.0 3.3E-45 7.1E-50 350.6 22.6 187 65-282 2-192 (222)
74 PRK08290 enoyl-CoA hydratase; 100.0 1E-44 2.2E-49 360.0 23.5 260 64-414 2-262 (288)
75 PRK11730 fadB multifunctional 100.0 5.1E-44 1.1E-48 393.8 27.5 289 67-425 7-296 (715)
76 PRK08788 enoyl-CoA hydratase; 100.0 2.5E-43 5.4E-48 348.7 27.7 252 64-423 13-274 (287)
77 KOG1681 Enoyl-CoA isomerase [L 100.0 8.1E-45 1.8E-49 333.8 15.2 272 64-433 17-290 (292)
78 TIGR03200 dearomat_oah 6-oxocy 100.0 5.1E-43 1.1E-47 350.3 26.5 286 77-424 38-327 (360)
79 PRK08272 enoyl-CoA hydratase; 100.0 1.7E-43 3.6E-48 353.9 22.7 208 64-282 8-217 (302)
80 PRK11154 fadJ multifunctional 100.0 6.5E-43 1.4E-47 385.0 27.8 284 68-426 7-294 (708)
81 PRK06213 enoyl-CoA hydratase; 100.0 1E-42 2.2E-47 335.1 22.9 223 67-405 4-227 (229)
82 COG0447 MenB Dihydroxynaphthoi 100.0 5.2E-44 1.1E-48 326.2 13.1 261 63-434 15-277 (282)
83 TIGR02440 FadJ fatty oxidation 100.0 1E-41 2.3E-46 374.6 30.1 281 70-426 4-289 (699)
84 TIGR02437 FadB fatty oxidation 100.0 8.4E-42 1.8E-46 375.6 28.1 291 67-426 7-297 (714)
85 TIGR02441 fa_ox_alpha_mit fatt 100.0 2.2E-40 4.8E-45 365.1 28.1 299 59-426 6-321 (737)
86 PLN02267 enoyl-CoA hydratase/i 100.0 5.9E-40 1.3E-44 317.6 22.2 185 68-282 2-190 (239)
87 KOG0016 Enoyl-CoA hydratase/is 100.0 1.3E-39 2.8E-44 306.4 22.2 258 64-426 5-263 (266)
88 cd06558 crotonase-like Crotona 100.0 1.1E-37 2.5E-42 291.9 19.9 192 69-289 2-193 (195)
89 KOG1682 Enoyl-CoA isomerase [L 100.0 1.8E-37 3.9E-42 280.8 19.0 253 68-434 34-286 (287)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 3.3E-37 7.2E-42 327.1 22.3 201 63-290 8-225 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.1E-36 2.4E-41 324.0 21.3 200 63-289 12-228 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 99.9 4.5E-24 9.7E-29 184.1 11.3 117 317-450 2-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 1.4E-18 3E-23 160.9 11.3 142 94-281 22-173 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.8 6.8E-18 1.5E-22 157.6 13.3 145 78-278 2-166 (187)
95 cd07019 S49_SppA_1 Signal pept 99.6 1.8E-15 4E-20 143.9 10.8 101 77-221 2-104 (211)
96 TIGR00705 SppA_67K signal pept 99.5 7.2E-14 1.6E-18 151.3 11.3 160 74-281 307-515 (584)
97 cd07022 S49_Sppa_36K_type Sign 99.5 5.9E-13 1.3E-17 127.0 13.7 96 83-223 13-109 (214)
98 cd00394 Clp_protease_like Case 99.5 6.6E-13 1.4E-17 120.8 12.5 135 91-274 8-161 (161)
99 cd07016 S14_ClpP_1 Caseinolyti 99.4 1.4E-12 3.1E-17 118.6 11.6 95 179-274 50-160 (160)
100 cd07023 S49_Sppa_N_C Signal pe 99.4 4.7E-12 1E-16 120.2 13.0 100 77-222 2-101 (208)
101 TIGR00706 SppA_dom signal pept 99.3 5.7E-11 1.2E-15 112.7 13.9 138 96-281 15-199 (207)
102 cd07021 Clp_protease_NfeD_like 99.2 3.4E-10 7.3E-15 104.8 13.6 142 78-277 2-171 (178)
103 cd07018 S49_SppA_67K_type Sign 99.1 4.1E-10 8.9E-15 108.1 11.3 90 90-224 25-114 (222)
104 KOG1683 Hydroxyacyl-CoA dehydr 98.7 6.9E-09 1.5E-13 103.7 2.9 171 76-277 66-240 (380)
105 cd07015 Clp_protease_NfeD Nodu 98.5 3.1E-06 6.6E-11 77.9 13.9 139 90-277 9-165 (172)
106 cd07013 S14_ClpP Caseinolytic 98.4 2.2E-06 4.7E-11 78.3 11.0 136 91-274 9-162 (162)
107 PRK12319 acetyl-CoA carboxylas 98.4 5.3E-05 1.2E-09 74.0 20.4 139 88-277 76-214 (256)
108 PRK10949 protease 4; Provision 98.4 6E-06 1.3E-10 90.2 15.3 164 74-287 325-539 (618)
109 PRK00277 clpP ATP-dependent Cl 98.3 3.5E-06 7.5E-11 79.6 10.8 136 89-277 38-196 (200)
110 CHL00198 accA acetyl-CoA carbo 98.3 7.2E-05 1.6E-09 74.9 20.3 138 88-276 132-269 (322)
111 TIGR00513 accA acetyl-CoA carb 98.2 0.00012 2.6E-09 73.4 19.6 139 88-277 129-267 (316)
112 PLN03230 acetyl-coenzyme A car 98.2 0.00019 4.1E-09 73.8 21.0 138 89-277 200-337 (431)
113 PRK05724 acetyl-CoA carboxylas 98.2 0.00028 6E-09 70.8 20.3 139 88-277 129-267 (319)
114 cd07017 S14_ClpP_2 Caseinolyti 98.1 1.6E-05 3.5E-10 73.2 10.3 134 91-274 18-171 (171)
115 PRK12553 ATP-dependent Clp pro 98.1 2.9E-05 6.3E-10 73.7 12.3 136 90-277 43-202 (207)
116 PF01972 SDH_sah: Serine dehyd 98.1 5E-05 1.1E-09 73.8 13.9 97 89-235 70-166 (285)
117 PLN03229 acetyl-coenzyme A car 98.1 0.00044 9.6E-09 75.3 21.3 139 88-277 220-358 (762)
118 COG0616 SppA Periplasmic serin 98.0 6.2E-05 1.3E-09 76.1 12.6 139 96-281 82-266 (317)
119 PF00574 CLP_protease: Clp pro 98.0 5.6E-05 1.2E-09 70.1 10.4 98 179-277 66-181 (182)
120 PRK11778 putative inner membra 98.0 4.7E-05 1E-09 76.8 10.2 99 181-281 148-290 (330)
121 PRK14512 ATP-dependent Clp pro 97.9 0.00013 2.8E-09 68.7 12.5 98 179-277 73-188 (197)
122 TIGR03133 malonate_beta malona 97.8 0.00086 1.9E-08 66.1 16.8 153 76-279 60-219 (274)
123 CHL00028 clpP ATP-dependent Cl 97.8 0.00023 5.1E-09 67.1 12.0 138 90-278 38-197 (200)
124 TIGR00493 clpP ATP-dependent C 97.8 0.00037 8E-09 65.4 12.5 137 90-276 34-190 (191)
125 PRK07189 malonate decarboxylas 97.6 0.00093 2E-08 66.6 13.2 153 76-279 69-228 (301)
126 PRK12551 ATP-dependent Clp pro 97.5 0.0011 2.4E-08 62.3 12.1 139 90-278 33-191 (196)
127 PRK14513 ATP-dependent Clp pro 97.5 0.0017 3.8E-08 61.2 12.3 98 179-279 77-194 (201)
128 PRK14514 ATP-dependent Clp pro 97.5 0.0016 3.4E-08 62.3 11.9 98 179-277 104-219 (221)
129 TIGR00515 accD acetyl-CoA carb 97.3 0.0087 1.9E-07 59.5 15.6 151 77-285 122-273 (285)
130 PRK05654 acetyl-CoA carboxylas 97.3 0.011 2.4E-07 58.9 16.3 152 74-283 119-272 (292)
131 TIGR03134 malonate_gamma malon 97.2 0.016 3.4E-07 56.2 16.2 158 75-280 31-192 (238)
132 PF01343 Peptidase_S49: Peptid 97.1 0.0003 6.6E-09 63.6 2.9 99 183-282 2-145 (154)
133 CHL00174 accD acetyl-CoA carbo 97.1 0.015 3.3E-07 57.8 14.4 152 77-286 135-288 (296)
134 TIGR00705 SppA_67K signal pept 97.0 0.0091 2E-07 65.4 13.2 85 94-222 76-160 (584)
135 COG1030 NfeD Membrane-bound se 96.9 0.014 3.1E-07 60.5 13.3 147 74-276 25-187 (436)
136 TIGR01117 mmdA methylmalonyl-C 96.8 0.036 7.9E-07 59.7 15.9 156 80-282 319-486 (512)
137 PRK12552 ATP-dependent Clp pro 96.7 0.028 6.1E-07 53.8 12.5 96 179-277 99-214 (222)
138 COG0740 ClpP Protease subunit 96.6 0.022 4.8E-07 53.4 10.8 99 179-280 77-195 (200)
139 PF01039 Carboxyl_trans: Carbo 96.1 0.064 1.4E-06 57.7 12.5 141 77-279 59-207 (493)
140 COG0825 AccA Acetyl-CoA carbox 96.1 0.031 6.7E-07 54.9 9.0 88 178-277 179-266 (317)
141 PLN02820 3-methylcrotonyl-CoA 96.1 0.086 1.9E-06 57.4 13.5 110 77-222 131-241 (569)
142 PRK10949 protease 4; Provision 95.8 0.13 2.8E-06 56.7 13.1 85 94-222 95-179 (618)
143 TIGR01117 mmdA methylmalonyl-C 95.7 0.11 2.3E-06 56.1 12.0 143 77-278 84-229 (512)
144 COG0777 AccD Acetyl-CoA carbox 95.4 0.59 1.3E-05 45.8 14.6 148 77-282 124-272 (294)
145 PLN02157 3-hydroxyisobutyryl-C 92.7 0.17 3.8E-06 52.8 5.4 68 358-437 228-298 (401)
146 COG4799 Acetyl-CoA carboxylase 91.4 0.67 1.5E-05 49.7 7.9 102 77-218 93-194 (526)
147 PLN02820 3-methylcrotonyl-CoA 90.7 3.6 7.7E-05 45.1 12.9 146 89-281 380-544 (569)
148 PF01039 Carboxyl_trans: Carbo 86.5 3.3 7.1E-05 44.6 9.1 162 74-282 292-469 (493)
149 KOG0840 ATP-dependent Clp prot 85.3 5.2 0.00011 38.9 8.7 133 90-277 100-257 (275)
150 PF02601 Exonuc_VII_L: Exonucl 74.0 6.7 0.00015 39.5 5.9 81 92-218 53-136 (319)
151 COG1570 XseA Exonuclease VII, 71.5 7 0.00015 41.2 5.3 37 178-217 216-253 (440)
152 COG0074 SucD Succinyl-CoA synt 70.8 13 0.00028 36.9 6.7 21 100-120 189-209 (293)
153 TIGR00237 xseA exodeoxyribonuc 68.8 9.6 0.00021 40.3 5.8 81 91-218 167-248 (432)
154 COG4799 Acetyl-CoA carboxylase 61.1 48 0.001 35.9 9.3 116 77-235 326-442 (526)
155 PF13607 Succ_CoA_lig: Succiny 60.1 26 0.00056 31.0 6.0 24 98-121 41-64 (138)
156 PRK00286 xseA exodeoxyribonucl 58.4 17 0.00037 38.4 5.5 39 177-218 214-253 (438)
157 PLN02522 ATP citrate (pro-S)-l 52.0 36 0.00079 37.6 6.7 23 99-121 210-233 (608)
158 KOG0540 3-Methylcrotonyl-CoA c 49.7 1.1E+02 0.0024 32.4 9.4 150 80-281 353-511 (536)
159 PTZ00187 succinyl-CoA syntheta 43.5 59 0.0013 33.0 6.2 15 185-199 250-264 (317)
160 smart00250 PLEC Plectin repeat 32.6 35 0.00076 22.9 1.9 19 254-273 17-35 (38)
161 TIGR01019 sucCoAalpha succinyl 31.0 83 0.0018 31.4 5.0 13 186-198 224-236 (286)
162 PLN00125 Succinyl-CoA ligase [ 29.9 1E+02 0.0022 31.1 5.4 12 187-198 233-244 (300)
163 PRK05678 succinyl-CoA syntheta 29.5 94 0.002 31.1 5.1 14 186-199 226-239 (291)
164 TIGR02717 AcCoA-syn-alpha acet 27.8 84 0.0018 33.4 4.7 48 181-230 225-272 (447)
165 PRK06091 membrane protein FdrA 25.1 1.4E+02 0.0031 32.6 5.8 22 178-199 270-291 (555)
166 COG0793 Prc Periplasmic protea 24.9 50 0.0011 34.7 2.3 52 77-135 205-258 (406)
167 PF03464 eRF1_2: eRF1 domain 2 24.8 1.1E+02 0.0025 26.4 4.3 45 77-121 25-83 (133)
168 PF06833 MdcE: Malonate decarb 23.5 2E+02 0.0044 27.8 6.0 105 172-287 90-197 (234)
169 PF09905 DUF2132: Uncharacteri 23.2 1.3E+02 0.0028 23.0 3.6 28 326-362 34-61 (64)
170 COG4565 CitB Response regulato 23.2 4.3E+02 0.0092 25.4 7.9 59 229-288 55-115 (224)
171 PF00549 Ligase_CoA: CoA-ligas 21.5 91 0.002 28.1 3.0 24 98-121 60-83 (153)
172 PF00681 Plectin: Plectin repe 20.7 35 0.00077 23.9 0.2 20 254-274 17-36 (45)
No 1
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.4e-67 Score=540.80 Aligned_cols=354 Identities=34% Similarity=0.602 Sum_probs=305.2
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
..+.+.++. .+++++||||||+++||||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 40 ~~~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~-- 115 (407)
T PLN02851 40 LQDQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEG-- 115 (407)
T ss_pred CCCCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhcccc--
Confidence 345677777 689999999999999999999999999999999999999999999998 8999999999986522110
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
.......++..++.+.+.|.++|||+||+|||+|+|||++|+++|||||++++++|++|
T Consensus 116 ---------------------~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famP 174 (407)
T PLN02851 116 ---------------------NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHP 174 (407)
T ss_pred ---------------------chHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecc
Confidence 00123446777888889999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|+|++|. .+++|+|||++|+ |+||+++||++++||++++..+.+.+.... ..+...+...
T Consensus 175 E~~iGl~PdvG~s~~L~rl~g~--~g~~L~LTG~~i~-a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~--~~~~~~~~~~ 249 (407)
T PLN02851 175 EVQMGFHPDAGASYYLSRLPGY--LGEYLALTGQKLN-GVEMIACGLATHYCLNARLPLIEERLGKLL--TDDPAVIEDS 249 (407)
T ss_pred hhccCCCCCccHHHHHHHhcCH--HHHHHHHhCCcCC-HHHHHHCCCceeecCHhhHHHHHHHHHhhc--cCCHHHHHHH
Confidence 9999999999999999999994 6999999999999 999999999999999999866555554432 2345568889
Q ss_pred HHhhcCCC-CCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 304 LAKYSSDP-EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 304 l~~~~~~~-~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
|++|...+ +....+....+.|++||+.+ |+++|+++|+.+.+.. ..+||+++++.|.++||+|+++|+++++++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~~~I~~~F~~~-sv~~I~~~L~~~~~~~---~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~ 325 (407)
T PLN02851 250 LAQYGDLVYPDKSSVLHKIETIDKCFGHD-TVEEIIEALENEAASS---YDEWCKKALKKIKEASPLSLKVTLQSIREGR 325 (407)
T ss_pred HHHhccccCCCcccHHHHHHHHHHHhCCC-CHHHHHHHHHhccccc---chHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99997542 22345556688999999988 9999999999753210 1489999999999999999999999999987
Q ss_pred hhcCCCccccCCHHHHHHHHHHHHHhhc---CCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCCCCCc
Q 012534 383 SAHGKTDNELSKLSGVMKYEYRVALRSS---LRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEEL 459 (461)
Q Consensus 383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~---~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~~~~~ 459 (461)
..++.+|+++|+++..+++ .++||.|||+|.|+||+++|+|+|++++||+++.|+++|+|++.+.-+|
T Consensus 326 ---------~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l 396 (407)
T PLN02851 326 ---------FQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESEL 396 (407)
T ss_pred ---------cCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccc
Confidence 5699999999999999987 5899999999999999999999999999999999999999985421145
Q ss_pred C
Q 012534 460 K 460 (461)
Q Consensus 460 ~ 460 (461)
+
T Consensus 397 ~ 397 (407)
T PLN02851 397 E 397 (407)
T ss_pred c
Confidence 4
No 2
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.4e-67 Score=539.35 Aligned_cols=347 Identities=36% Similarity=0.635 Sum_probs=299.9
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (461)
Q Consensus 66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (461)
..|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++........
T Consensus 9 ~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~~--- 83 (381)
T PLN02988 9 SQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQGN--- 83 (381)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcccc---
Confidence 3467776 789999999999999999999999999999999999999999999998 89999999999863211100
Q ss_pred CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534 146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 225 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~ 225 (461)
......++...+.+...|.++|||+||+|||+|+|||++|+++|||||++++++|++||+
T Consensus 84 --------------------~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~ 143 (381)
T PLN02988 84 --------------------WRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPET 143 (381)
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhh
Confidence 001223555566677789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
++|++|++|++++|+|++|. .+++|+|||++++ |.||+++|||+++||++++...+.+++.. ...+...+...++
T Consensus 144 ~iGl~Pd~G~s~~L~rl~G~--~~~~l~LTG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~la~~--~~~~p~~~~~~~~ 218 (381)
T PLN02988 144 ALGLFPDVGASYFLSRLPGF--FGEYVGLTGARLD-GAEMLACGLATHFVPSTRLTALEADLCRI--GSNDPTFASTILD 218 (381)
T ss_pred hcCcCCCccHHHHHHHHHHH--HHHHHHHcCCCCC-HHHHHHcCCceEecCHhHHHHHHHHHHHh--hccCHHHHHHHHH
Confidence 99999999999999999993 7999999999999 99999999999999999999988888743 2234444677777
Q ss_pred hhcCCCC-CCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 306 KYSSDPE-GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 306 ~~~~~~~-~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
.|...+. ....+....+.|++||+.+ |+++|+++|+.+.+.. ..+|++++++.|.++||+|+++|+++++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~I~~~f~~~-~~~~i~~~L~~~~~~~---~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~-- 292 (381)
T PLN02988 219 AYTQHPRLKPQSAYHRLDVIDRCFSRR-TVEEIISALEREATQE---ADGWISATIQALKKASPASLKISLRSIREGR-- 292 (381)
T ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCC-CHHHHHHHHHhhcccc---ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--
Confidence 7765542 1234445688999999988 9999999999852100 1489999999999999999999999999987
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcC---CCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTG 455 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~ 455 (461)
..++.+|+++|+++..+++. ++||.|||||.|+||+++|+|+|++++||+++.|+++|+|.+.+
T Consensus 293 -------~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~ 359 (381)
T PLN02988 293 -------LQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEE 359 (381)
T ss_pred -------cCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCcc
Confidence 56999999999999999988 69999999999999999999999999999999999999998654
No 3
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4e-68 Score=516.99 Aligned_cols=357 Identities=49% Similarity=0.790 Sum_probs=326.3
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
..+.|.++. ++....||||||+++||||.+|...+...|..|+.++.+++||+.|+|+++||||+|++.......++.
T Consensus 36 ~~~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~- 113 (401)
T KOG1684|consen 36 SKDQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKE- 113 (401)
T ss_pred cCCceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCC-
Confidence 345677877 789999999999999999999999999999999999999999999998899999999996655433221
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
......+|..+|.+++.|.++.||+||.+||..||||++|+++.-||||||++.|+||
T Consensus 114 ----------------------~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmP 171 (401)
T KOG1684|consen 114 ----------------------TPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMP 171 (401)
T ss_pred ----------------------chHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceeccc
Confidence 1245679999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+.||++||+|++|+|+|++| ..+.||.|||.+++ +.||+..||++|+|+++++..+.++|. ...+.+|...+.+.
T Consensus 172 Et~IGlfPDVG~Sy~lsrlpg--~lg~YLgLTG~rl~-GaD~~~~GlATHyv~S~~l~~Lee~L~-~~l~~dp~~~I~~~ 247 (401)
T KOG1684|consen 172 ETGIGLFPDVGASYFLSRLPG--YLGLYLGLTGQRLS-GADALRCGLATHYVPSEKLPSLEERLL-KNLNDDPQSVINET 247 (401)
T ss_pred ccccccccCccceeehhhCcc--HHHHhhhhccceec-chHHHHhcchhhccchhhhhHHHHHHh-hhcCCCcHHHHHHH
Confidence 999999999999999999999 48999999999999 899999999999999999999999998 56788999999999
Q ss_pred HHhhcCCCCCCch-hhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 304 LAKYSSDPEGEAP-LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 304 l~~~~~~~~~~~~-~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
|.+|...+.++.. +....++|++||+.+ ||+|||+.|++.++ ..++.+||+++++.|.+.||+|+++|.++++.+.
T Consensus 248 l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~-tVeeIie~lk~~q~--~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs 324 (401)
T KOG1684|consen 248 LEKYASPAKDESFSLSLKLDVINKCFSAN-TVEEIIEALKNYQQ--SADGSEWAKETLKTLKKMSPTSLKVTLRQIREGS 324 (401)
T ss_pred HHHhcccCCCccccchhhHHHHHHhhccc-cHHHHHHHHHHHhh--hhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhh
Confidence 9999998755544 455788999999999 99999999988876 3345799999999999999999999999999887
Q ss_pred hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCCCCCcCC
Q 012534 383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 461 (461)
Q Consensus 383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~~~~~~~ 461 (461)
..++.+|+.+|+++..+.+.++||.||++|.|+||+++|+|+|.+++||++++|+.+|.|.+. +++|++
T Consensus 325 ---------~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~-~~eLkl 393 (401)
T KOG1684|consen 325 ---------KQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPS-KSELKL 393 (401)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCC-cccccC
Confidence 679999999999999999999999999999999999999999999999999999999999554 577775
No 4
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.6e-66 Score=533.30 Aligned_cols=354 Identities=32% Similarity=0.574 Sum_probs=296.8
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
.+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus 36 ~~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~-- 111 (401)
T PLN02157 36 DYQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGS-- 111 (401)
T ss_pred CCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccc--
Confidence 34467776 789999999999999999999999999999999999999999999998 89999999999864221100
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
......++...+.++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||
T Consensus 112 ---------------------~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE 170 (401)
T PLN02157 112 ---------------------PDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPE 170 (401)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChh
Confidence 00122355666777888999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++| . .+++|+|||+.|+ |+||+++||||++||++++... .+++..... .+...+....
T Consensus 171 ~~iGl~Pd~G~s~~L~rl~G-~-~a~~L~LTG~~i~-A~eA~~~GLv~~vVp~~~l~~~-~~~~~~i~~-~~p~av~~~k 245 (401)
T PLN02157 171 TIIGFHPDAGASFNLSHLPG-R-LGEYLGLTGLKLS-GAEMLACGLATHYIRSEEIPVM-EEQLKKLLT-DDPSVVESCL 245 (401)
T ss_pred hhcCCCCCccHHHHHHHhhh-H-HHHHHHHcCCcCC-HHHHHHcCCceEEeCHhHHHHH-HHHHHHHHc-CCHHHHHHHH
Confidence 99999999999999999999 3 8999999999999 9999999999999999998544 455444332 2333444444
Q ss_pred HhhcCCC-CCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 305 AKYSSDP-EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 305 ~~~~~~~-~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
+.+.... .....+......|.+||+.+ +++||+++|+.+.+.. -.+|++++++.|.++||+|+++|.++++++.
T Consensus 246 ~~~~~~~~~~~~~l~~~~~~i~~~f~~~-d~~ei~~al~~~~~kr---~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~- 320 (401)
T PLN02157 246 EKCAEVAHPEKTGVIRRIDLLEKCFSHD-TVEEIIDSLEIEAGRR---KDTWCITTLRRLKESSPLSLKVALRSIREGR- 320 (401)
T ss_pred HHHhcccCCcchhHHHHHHHHHHHhcCC-CHHHHHHHHHhhhccc---chHHHHHHHHHHHhcCcHHHHHHHHHHHHhh-
Confidence 4443321 22344555678999999987 9999999997642211 1489999999999999999999999999987
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcC---CCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCCCCCcC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELK 460 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~~~~~~ 460 (461)
..++.+|+++|+++..+++. ++||.|||+|.|+||+++|+|+|++++||+++.|++||+|+.++.++|+
T Consensus 321 --------~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~ 392 (401)
T PLN02157 321 --------LQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLD 392 (401)
T ss_pred --------cCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccc
Confidence 56999999999999999885 6999999999999999999999999999999999999999864445565
Q ss_pred C
Q 012534 461 V 461 (461)
Q Consensus 461 ~ 461 (461)
+
T Consensus 393 ~ 393 (401)
T PLN02157 393 L 393 (401)
T ss_pred c
Confidence 3
No 5
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=5.1e-64 Score=514.76 Aligned_cols=352 Identities=35% Similarity=0.633 Sum_probs=300.4
Q ss_pred CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (461)
Q Consensus 63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~ 142 (461)
++++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++.......
T Consensus 8 ~~~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~- 84 (379)
T PLN02874 8 PAEEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESD- 84 (379)
T ss_pred CCCCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccc-
Confidence 3456688876 789999999999999999999999999999999999999999999998 8999999999875321000
Q ss_pred CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
.....++...+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus 85 ------------------------~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~ 140 (379)
T PLN02874 85 ------------------------DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFAT 140 (379)
T ss_pred ------------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEec
Confidence 00112333445567789999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
||+++|++|++|++++|++++| . .+++|+|||+.|+ |+||+++|||+++||++++.+.+.++.+. ...+...+++
T Consensus 141 pe~~iGl~p~~g~~~~L~rl~g-~-~a~~l~ltG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~l~~l--~~~~~~~~~~ 215 (379)
T PLN02874 141 PEASVGFHTDCGFSYILSRLPG-H-LGEYLALTGARLN-GKEMVACGLATHFVPSEKLPELEKRLLNL--NSGDESAVQE 215 (379)
T ss_pred cccccCcCCChhHHHHHHhhhH-H-HHHHHHHcCCccc-HHHHHHcCCccEEeCHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 9999999999999999999988 4 8999999999999 99999999999999999888755566443 3345677899
Q ss_pred HHHhhcCCC-CCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534 303 LLAKYSSDP-EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV 381 (461)
Q Consensus 303 ~l~~~~~~~-~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~ 381 (461)
+|++|.... .....+....+.|.+||+.+ ++.+|+++|++..+... .+||.+++++|+++||+|++.+|++++.+
T Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~~~eii~al~~~~~~~~---~~~A~~~a~~l~~~sP~al~~tk~~~~~~ 291 (379)
T PLN02874 216 AIEEFSKDVQADEDSILNKQSWINECFSKD-TVEEIIKAFESEASKTG---NEWIKETLKGLRRSSPTGLKITLRSIREG 291 (379)
T ss_pred HHHHhhcccCCCcchhHHHHHHHHHHhCCC-CHHHHHHHHhhcccccc---cHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 999988653 23345555688999999987 99999999997543222 48999999999999999999999999987
Q ss_pred hhhcCCCccccCCHHHHHHHHHHHHHhhcC---CCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccCCCCCCCC
Q 012534 382 ASAHGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEE 458 (461)
Q Consensus 382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p~~~~~~~ 458 (461)
. ..++.++++.|++....++. ++||+||++||++||+|+|+|+++++++|++++|+++|.|...+ .|
T Consensus 292 ~---------~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~~-~~ 361 (379)
T PLN02874 292 R---------KQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKAR-EE 361 (379)
T ss_pred c---------cCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCCCc-cc
Confidence 6 56899999999999888777 99999999999878889999999999999999999999996432 34
Q ss_pred cC
Q 012534 459 LK 460 (461)
Q Consensus 459 ~~ 460 (461)
|+
T Consensus 362 ~~ 363 (379)
T PLN02874 362 LQ 363 (379)
T ss_pred cC
Confidence 54
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=6.2e-64 Score=508.25 Aligned_cols=339 Identities=43% Similarity=0.729 Sum_probs=297.9
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.........
T Consensus 4 ~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~--- 79 (342)
T PRK05617 4 EVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDP--- 79 (342)
T ss_pred eEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCc---
Confidence 467776 7899999999999999999999999999999999999999999999987899999999987542111000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
.....++...+.++..+..+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 80 --------------------~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~ 139 (342)
T PRK05617 80 --------------------LAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETG 139 (342)
T ss_pred --------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccc
Confidence 000123344456778899999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++| . .+++|+|||+.++ |+||+++|||+++||++++....+++++..+ .+..+.++.+|.+
T Consensus 140 lGl~P~~g~~~~L~r~~g-~-~a~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (342)
T PRK05617 140 IGFFPDVGGTYFLSRAPG-A-LGTYLALTGARIS-AADALYAGLADHFVPSADLPALLDALISLRW-DSGADVVDAALAA 215 (342)
T ss_pred cCcCCCccceeEehhccc-H-HHHHHHHcCCCCC-HHHHHHcCCcceecCHHHHHHHHHHHHhcCC-ccchhHHHHHHHH
Confidence 999999999999999977 5 8999999999999 9999999999999999988876667765544 3334567889999
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
|...++. ..+......|++||+.. ++++|+++|+++. ++||.+++++|+++||.|++.+|+++++..
T Consensus 216 ~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~~~~l~~~~-------~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~---- 282 (342)
T PRK05617 216 FATPAPA-SELAAQRAWIDECFAGD-TVEDIIAALEADG-------GEFAAKTADTLRSRSPTSLKVTLEQLRRAR---- 282 (342)
T ss_pred hccCCCc-chhHHHHHHHHHHhCCC-CHHHHHHHHHhcc-------HHHHHHHHHHHHhCCcHHHHHHHHHHHHhc----
Confidence 8887554 47778889999999997 9999999999995 489999999999999999999999999876
Q ss_pred CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhccccC
Q 012534 387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEP 451 (461)
Q Consensus 387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~p 451 (461)
..++.++++.|...+..++.++|++||+++|+++|+|.|+|++++++||++++|+++|+|
T Consensus 283 -----~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 283 -----GLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred -----CCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 568999999999999999999999999999975665899999999999999999999998
No 7
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-55 Score=414.28 Aligned_cols=252 Identities=26% Similarity=0.398 Sum_probs=223.5
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (461)
+.....+++|+.|+||||+++|||+..|+.+|.++|..+++|+.+.++||||.| ++||+|+||+++......+....
T Consensus 38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~-- 114 (290)
T KOG1680|consen 38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDG-- 114 (290)
T ss_pred eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccccc--
Confidence 333334789999999999999999999999999999999999999999999998 99999999999986433221110
Q ss_pred CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534 148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227 (461)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l 227 (461)
.+. ..+..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++
T Consensus 115 ------------------------~~~---~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~ 167 (290)
T KOG1680|consen 115 ------------------------IFL---RVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRM 167 (290)
T ss_pred ------------------------ccc---chhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeeccccccc
Confidence 111 22333458999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534 228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307 (461)
Q Consensus 228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~ 307 (461)
|++|.+|||++|+|++|.+ +|+++++||++++ |+||+++||||+|||.+++.. ++.
T Consensus 168 Gi~p~~GGT~rl~r~vG~s-~Ale~~ltg~~~~-AqeA~~~GlVn~Vvp~~~~l~--eAv-------------------- 223 (290)
T KOG1680|consen 168 GIIPSWGGTQRLPRIVGKS-RALEMILTGRRLG-AQEAKKIGLVNKVVPSGDALG--EAV-------------------- 223 (290)
T ss_pred CCccCCCchhhHHHHhChH-HHHHHHHhcCccc-HHHHHhCCceeEeecchhHHH--HHH--------------------
Confidence 9999999999999999997 9999999999999 999999999999999988664 222
Q ss_pred cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534 308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 387 (461)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~ 387 (461)
+|++ +|+++||.+++..|+.++.+.
T Consensus 224 ----------------------------------------------~l~~----~Ia~~~~~~v~~~K~svn~~~----- 248 (290)
T KOG1680|consen 224 ----------------------------------------------KLAE----QIAKNSPLVVRADKESVNAAY----- 248 (290)
T ss_pred ----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh-----
Confidence 6666 899999999999999999976
Q ss_pred CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.+..|...+...+..+|-.|||.+|. +| |+|+|+.
T Consensus 249 ----e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~-~k-r~~~~~k 289 (290)
T KOG1680|consen 249 ----ETTLFEGLELERDLFGSTFATEDRLEGMTAFA-EK-RKPKFSK 289 (290)
T ss_pred ----hccHHHHHHhhhhhhhhhhhhHHHHHHHHHhc-cc-CCccccc
Confidence 67999999999999999999999999999998 67 8999984
No 8
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-53 Score=415.32 Aligned_cols=255 Identities=24% Similarity=0.289 Sum_probs=224.6
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
++.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~---- 76 (257)
T PRK05862 3 YETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSFM---- 76 (257)
T ss_pred CceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccchh----
Confidence 45577776 689999999999999999999999999999999999999999999997 899999999987531000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
..+......++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus 77 -------------------------~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 131 (257)
T PRK05862 77 -------------------------DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPE 131 (257)
T ss_pred -------------------------HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCch
Confidence 0012223346678999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 132 ~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------- 190 (257)
T PRK05862 132 IKLGVLPGMGGSQRLTRAVGKA-KAMDLCLTGRMMD-AAEAERAGLVSRVVPADKLLDEAL------------------- 190 (257)
T ss_pred hccCcCCCccHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCCCEeeCHhHHHHHHH-------------------
Confidence 9999999999999999999997 9999999999999 999999999999999877664222
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
+|++ +|++.+|.+++.+|++++...
T Consensus 191 -------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~-- 215 (257)
T PRK05862 191 -------------------------------------------------AAAT----TIASFSLPAVMMAKEAVNRAY-- 215 (257)
T ss_pred -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh--
Confidence 4444 788999999999999999875
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
..++.+++..|.+.+..++.++|++||+++|+ +| |+|.|+++
T Consensus 216 -------~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~-~k-r~p~~~~~ 257 (257)
T PRK05862 216 -------ETTLAEGLLFERRLFHSLFATEDQKEGMAAFV-EK-RKPVFKHR 257 (257)
T ss_pred -------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cc-CCCCCCCC
Confidence 46899999999999999999999999999999 77 89999863
No 9
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=5.7e-53 Score=413.79 Aligned_cols=258 Identities=26% Similarity=0.335 Sum_probs=227.3
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++......
T Consensus 2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~--- 77 (260)
T PRK05809 2 ELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEE--- 77 (260)
T ss_pred CcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChH---
Confidence 456788876 7899999999999999999999999999999999999999999999986899999999987531100
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
....+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 78 ------------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~p 133 (260)
T PRK05809 78 ------------------------EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQP 133 (260)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCc
Confidence 01112233345777899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+
T Consensus 134 e~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a------------------- 192 (260)
T PRK05809 134 EVGLGITPGFGGTQRLARIVGPG-KAKELIYTGDMIN-AEEALRIGLVNKVVEPEKLMEEA------------------- 192 (260)
T ss_pred ccccCCCCCccHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCCCcccChHHHHHHH-------------------
Confidence 99999999999999999999997 9999999999999 99999999999999987765321
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
.++++ +|+++||.+++.+|++++...
T Consensus 193 -------------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~- 218 (260)
T PRK05809 193 -------------------------------------------------KALAN----KIAANAPIAVKLCKDAINRGM- 218 (260)
T ss_pred -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh-
Confidence 14444 799999999999999999876
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus 219 --------~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~-~~-r~p~~~~ 259 (260)
T PRK05809 219 --------QVDIDTAVAIEAEDFGECFSTEDQTEGMTAFV-EK-REKNFKN 259 (260)
T ss_pred --------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCC
Confidence 56899999999999999999999999999999 67 8999975
No 10
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-53 Score=413.67 Aligned_cols=257 Identities=25% Similarity=0.362 Sum_probs=224.8
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++........
T Consensus 4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~---- 78 (260)
T PRK05980 4 TVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA---- 78 (260)
T ss_pred eEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc----
Confidence 477776 789999999999999999999999999999999999999999999998679999999998754211000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
......++.....++..|..+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 79 -------------------~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~ 139 (260)
T PRK05980 79 -------------------DVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIR 139 (260)
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccc
Confidence 0011224444456777899999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 140 ~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------- 196 (260)
T PRK05980 140 LGMPPTFGGTQRLPRLAGRK-RALELLLTGDAFS-AERALEIGLVNAVVPHEELLPAAR--------------------- 196 (260)
T ss_pred cCCCCCchHhhHHHhhcCHH-HHHHHHHcCCccC-HHHHHHcCCCCcccCHHHHHHHHH---------------------
Confidence 99999999999999999997 9999999999999 999999999999999877654222
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
++|+ +|++.+|.+++.+|++++...
T Consensus 197 -----------------------------------------------~~a~----~la~~~p~a~~~~K~~~~~~~---- 221 (260)
T PRK05980 197 -----------------------------------------------ALAR----RIIRHSPVAVAAILTAVTRGL---- 221 (260)
T ss_pred -----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh----
Confidence 4444 789999999999999999875
Q ss_pred CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534 387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 432 (461)
Q Consensus 387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w 432 (461)
..++.+++..|...+...+.++|++||+++|+ +| |+|+|
T Consensus 222 -----~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k-r~p~~ 260 (260)
T PRK05980 222 -----NLSIAEGLLIESEQFARMAGSADLREGLAAWI-ER-RRPAY 260 (260)
T ss_pred -----cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cc-CCCCC
Confidence 46799999999999999999999999999999 67 79988
No 11
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=5.3e-53 Score=411.84 Aligned_cols=250 Identities=23% Similarity=0.368 Sum_probs=222.1
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCC
Q 012534 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLK 153 (461)
Q Consensus 74 ~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (461)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.....
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-------------- 67 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-------------- 67 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh--------------
Confidence 578999999999999999999999999999999999999999999986589999999998753100
Q ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCc
Q 012534 154 CGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV 233 (461)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~ 233 (461)
.....+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++
T Consensus 68 -------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~ 134 (251)
T PLN02600 68 -------------SEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGA 134 (251)
T ss_pred -------------HHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCc
Confidence 0111234445567788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCC
Q 012534 234 GFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 313 (461)
Q Consensus 234 G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (461)
|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 135 g~~~~l~~~~G~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~~~~a~---------------------------- 184 (251)
T PLN02600 135 GGTQRLPRLVGRS-RAKELIFTGRRIG-AREAASMGLVNYCVPAGEAYEKAL---------------------------- 184 (251)
T ss_pred hHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCCcEeeChhHHHHHHH----------------------------
Confidence 9999999999998 9999999999999 999999999999999887654221
Q ss_pred CchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccC
Q 012534 314 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS 393 (461)
Q Consensus 314 ~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~ 393 (461)
++|+ +|+++||.+++.+|++++... ..
T Consensus 185 ----------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~---------~~ 211 (251)
T PLN02600 185 ----------------------------------------ELAQ----EINQKGPLAIKMAKKAINEGS---------EV 211 (251)
T ss_pred ----------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHc---------cC
Confidence 4444 799999999999999999765 56
Q ss_pred CHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 394 KLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 394 ~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
++.+.++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus 212 ~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p~~~~~ 251 (251)
T PLN02600 212 DMASGLEIEEECYEQVLKTKDRLEGLAAFA-EK-RKPVYTGK 251 (251)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-cC-CCCCCCCC
Confidence 899999999999999999999999999999 77 89999753
No 12
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-52 Score=411.55 Aligned_cols=254 Identities=23% Similarity=0.304 Sum_probs=223.3
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++......
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~------ 75 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKA------ 75 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChh------
Confidence 467776 78999999999986 9999999999999999999999999999999986799999999987431000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
....+...+..++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||++
T Consensus 76 ---------------------~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 134 (258)
T PRK09076 76 ---------------------VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEAS 134 (258)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccc
Confidence 01112333446777899999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 135 ~Gl~p~~g~~~~l~~~iG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------- 191 (258)
T PRK09076 135 VGLLPCAGGTQNLPWLVGEG-WAKRMILCGERVD-AATALRIGLVEEVVEKGEAREAAL--------------------- 191 (258)
T ss_pred cCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHCCCCceecCchhHHHHHH---------------------
Confidence 99999999999999999997 9999999999999 999999999999999887654221
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
++|+ +|+++||.+++.+|++++...
T Consensus 192 -----------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---- 216 (258)
T PRK09076 192 -----------------------------------------------ALAQ----KVANQSPSAVAACKTLIQAAR---- 216 (258)
T ss_pred -----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh----
Confidence 3444 799999999999999999765
Q ss_pred CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.++.|...+..++.++|++||+++|+ +| |+|+|++
T Consensus 217 -----~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~~ 257 (258)
T PRK09076 217 -----NGPRAAALALERELFVDLFDTEDQREGVNAFL-EK-RAPQWKN 257 (258)
T ss_pred -----cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 45799999999999999999999999999999 67 8999974
No 13
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-53 Score=412.87 Aligned_cols=255 Identities=24% Similarity=0.396 Sum_probs=219.9
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......
T Consensus 2 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-- 78 (259)
T PRK06494 2 ALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-- 78 (259)
T ss_pred CCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch--
Confidence 356688876 78999999999999999999999999999999999999999999999867999999999875311000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
. ....+.. +..+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 79 ------------------------~---~~~~~~~-~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~p 130 (259)
T PRK06494 79 ------------------------W---PESGFGG-LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALP 130 (259)
T ss_pred ------------------------h---hhHHHHH-HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCc
Confidence 0 0001111 23345899999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 131 e~~~Gl~p~~g~~~~l~~~vg~~-~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a------------------- 189 (259)
T PRK06494 131 EPRVGLAALAGGLHRLPRQIGLK-RAMGMILTGRRVT-AREGLELGFVNEVVPAGELLAAA------------------- 189 (259)
T ss_pred ccccCCCCCchHHHHHHHHcCHH-HHHHHHHcCCcCC-HHHHHHcCCCcEecCHhHHHHHH-------------------
Confidence 99999999999999999999998 9999999999999 99999999999999987765422
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
.+||+ +|+++||.+++.+|++++...
T Consensus 190 -------------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~- 215 (259)
T PRK06494 190 -------------------------------------------------ERWAD----DILACSPLSIRASKQAVYRGL- 215 (259)
T ss_pred -------------------------------------------------HHHHH----HHHhcCHHHHHHHHHHHHHhc-
Confidence 24454 799999999999999999865
Q ss_pred hcCCCccccCCHHHHHHHH--HHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYE--YRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E--~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.++.| ...+..++.++|++||+++|+ +| |+|+|++
T Consensus 216 --------~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 258 (259)
T PRK06494 216 --------EVSLEEAITAQRDYPAVEARRASQDYIEGPKAFA-EK-RPPRWKG 258 (259)
T ss_pred --------cCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH-cc-CCCCCCC
Confidence 56799999999 557788899999999999999 67 8999975
No 14
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-53 Score=414.68 Aligned_cols=261 Identities=22% Similarity=0.291 Sum_probs=228.7
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
+.+.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.......
T Consensus 9 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~-- 85 (269)
T PRK06127 9 PTGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDA-- 85 (269)
T ss_pred CCCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccch--
Confidence 456688887 78999999999999999999999999999999999999999999999867999999999875311000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
.....+......++..|..+||||||+|||+|+|||++|+++||+||++++++|++|
T Consensus 86 -----------------------~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~p 142 (269)
T PRK06127 86 -----------------------EAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIP 142 (269)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCc
Confidence 011123344456778899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 143 e~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a------------------- 201 (269)
T PRK06127 143 AARLGLGYGYDGVKNLVDLVGPS-AAKDLFYTARRFD-AAEALRIGLVHRVTAADDLETAL------------------- 201 (269)
T ss_pred hhhhCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCCCEeeCHHHHHHHH-------------------
Confidence 99999999999999999999998 9999999999999 99999999999999987776422
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
.+||+ ++++.||.+++.+|++++...
T Consensus 202 -------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~- 227 (269)
T PRK06127 202 -------------------------------------------------ADYAA----TIAGNAPLTLRAAKRAIAELL- 227 (269)
T ss_pred -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhc-
Confidence 24554 788999999999999999865
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
..++.+.++.|...+..++.++|++||+.+|+ +| |+|+|+++
T Consensus 228 --------~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek-r~p~~~~~ 269 (269)
T PRK06127 228 --------KDEPERDMAACQALVAACFDSEDYREGRAAFM-EK-RKPVFKGR 269 (269)
T ss_pred --------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHh-cC-CCCCCCCC
Confidence 46799999999999999999999999999999 67 89999763
No 15
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=7.9e-53 Score=411.62 Aligned_cols=252 Identities=21% Similarity=0.316 Sum_probs=222.5
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus 3 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~--- 74 (255)
T PRK09674 3 ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKD---LA--- 74 (255)
T ss_pred eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccc---hh---
Confidence 466776 789999999999999999999999999999999999999999999998 8999999999875310 00
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
..+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||++
T Consensus 75 -----------------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 131 (255)
T PRK09674 75 -----------------------ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEIT 131 (255)
T ss_pred -----------------------hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhh
Confidence 001122234667889999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. ++++|+++|+.++ |+||+++||||++||++++.+.+
T Consensus 132 ~Gl~p~~g~~~~l~~~ig~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a---------------------- 187 (255)
T PRK09674 132 LGIMPGAGGTQRLIRSVGKS-LASQMVLTGESIT-AQQAQQAGLVSEVFPPELTLERA---------------------- 187 (255)
T ss_pred cCCCCCccHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHH----------------------
Confidence 99999999999999999997 9999999999999 99999999999999987765321
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
.+||+ +|+++||.+++.+|++++...
T Consensus 188 ----------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~---- 213 (255)
T PRK09674 188 ----------------------------------------------LQLAS----KIARHSPLALRAAKQALRQSQ---- 213 (255)
T ss_pred ----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh----
Confidence 14444 799999999999999999875
Q ss_pred CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus 214 -----~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~-~k-r~p~~~~ 254 (255)
T PRK09674 214 -----EVDLQAGLAQERQLFTLLAATEDRHEGISAFL-EK-RTPDFKG 254 (255)
T ss_pred -----cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCC
Confidence 56899999999999999999999999999999 67 8999975
No 16
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-52 Score=411.33 Aligned_cols=258 Identities=23% Similarity=0.342 Sum_probs=227.0
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (461)
Q Consensus 66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (461)
+.+.+++.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... .
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~-~----- 76 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMN-E----- 76 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCC-h-----
Confidence 3577775468999999999999999999999999999999999999999999999856999999999874310 0
Q ss_pred CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534 146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 225 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~ 225 (461)
.....++.....++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus 77 ---------------------~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~ 135 (260)
T PRK07657 77 ---------------------EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTET 135 (260)
T ss_pred ---------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchh
Confidence 01112344455677889999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 136 ~~G~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------- 193 (260)
T PRK07657 136 TLAIIPGAGGTQRLPRLIGVG-RAKELIYTGRRIS-AQEAKEIGLVEFVVPAHLLEEKAI-------------------- 193 (260)
T ss_pred ccCcCCCccHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCCCeecCHHHHHHHHH--------------------
Confidence 999999999999999999998 9999999999999 999999999999999877754222
Q ss_pred hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
+|++ +|+.++|.+++.+|++++...
T Consensus 194 ------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~--- 218 (260)
T PRK07657 194 ------------------------------------------------EIAE----KIASNGPIAVRQAKEAISNGI--- 218 (260)
T ss_pred ------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc---
Confidence 4444 799999999999999999865
Q ss_pred CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
..++.+.++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus 219 ------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~~-r~~~~~~~ 260 (260)
T PRK07657 219 ------QVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFK-EK-RKPMYKGE 260 (260)
T ss_pred ------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHh-cC-CCCCCCCC
Confidence 46799999999999999999999999999999 67 89999753
No 17
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=410.33 Aligned_cols=254 Identities=23% Similarity=0.308 Sum_probs=222.4
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (461)
Q Consensus 66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (461)
+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++ +++|+|||||.| ++||+|+|++++......
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~----- 72 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAG----- 72 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccch-----
Confidence 3577776 7899999999999999999999999999999998 789999999998 799999999987531100
Q ss_pred CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534 146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 225 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~ 225 (461)
.........+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus 73 ----------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~ 130 (255)
T PRK08150 73 ----------------------EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEG 130 (255)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEecccc
Confidence 0011233345677789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.
T Consensus 131 ~~Gl~p~~g~~~~l~~~iG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------- 188 (255)
T PRK08150 131 QRGIFVGGGGSVRVPRLIGVA-RMTDMMLTGRVYD-AQEGERLGLAQYLVPAGEALDKAM-------------------- 188 (255)
T ss_pred ccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHcCCccEeeCchHHHHHHH--------------------
Confidence 999999999999999999997 9999999999999 999999999999999888764222
Q ss_pred hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
+||+ +|+++||.+++.+|++++...
T Consensus 189 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~--- 213 (255)
T PRK08150 189 ------------------------------------------------ELAR----RIAQNAPLTNFAVLNALPRIA--- 213 (255)
T ss_pred ------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc---
Confidence 4444 799999999999999999765
Q ss_pred CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
..++.+.++.|...+...+.++|++||+++|+ +| |+|+|++.
T Consensus 214 ------~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-~k-r~p~~~~~ 255 (255)
T PRK08150 214 ------DMSADDGLFVESLMAAVAQSAPEAKERLRAFL-EK-KAAKVKPP 255 (255)
T ss_pred ------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCCC
Confidence 46799999999998888999999999999999 67 89999763
No 18
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-52 Score=410.37 Aligned_cols=260 Identities=22% Similarity=0.298 Sum_probs=222.9
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
++.+.++. +++|++||||||+++|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~- 80 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGDSF- 80 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccchh-
Confidence 45688886 789999999999999999999999999999999999999999999998 899999999997642100000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.. ... ..... ..+..+..+||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus 81 ------------------~~---~~~-~~~~~-~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe 137 (263)
T PRK07799 81 ------------------KD---GSY-DPSRI-DALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISE 137 (263)
T ss_pred ------------------hh---hhh-hhhHH-HHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcc
Confidence 00 000 00111 12335789999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 138 ~~~Gl~p~~g~~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------- 196 (263)
T PRK07799 138 AKWSLFPMGGSAVRLVRQIPYT-VACDLLLTGRHIT-AAEAKEIGLIGHVVPDGQALDKAL------------------- 196 (263)
T ss_pred cccCcCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCccEecCcchHHHHHH-------------------
Confidence 9999999999999999999998 9999999999999 999999999999999887654211
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
++++ +|++.||.+++.+|++++...
T Consensus 197 -------------------------------------------------~~a~----~~~~~~~~a~~~~K~~l~~~~-- 221 (263)
T PRK07799 197 -------------------------------------------------ELAE----LINANGPLAVQAILRTIRETE-- 221 (263)
T ss_pred -------------------------------------------------HHHH----HHHhcChHHHHHHHHHHHHhh--
Confidence 4444 799999999999999999865
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
..++.++++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus 222 -------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~~-r~p~~~~~ 263 (263)
T PRK07799 222 -------GMHENEAFKIDTKIGIPVFLSEDAKEGPRAFA-EK-RAPNFQGR 263 (263)
T ss_pred -------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHH-cc-CCCCCCCC
Confidence 56899999999999999999999999999999 67 89999763
No 19
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-52 Score=412.23 Aligned_cols=267 Identities=20% Similarity=0.288 Sum_probs=227.3
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06142 5 YESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQLGKD 82 (272)
T ss_pred cceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhccccccc
Confidence 56688886 789999999999999999999999999999999999999999999998 8999999999975421100000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.. .........+...+.+++..|..+||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus 83 ~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 146 (272)
T PRK06142 83 GL----------------ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVRE 146 (272)
T ss_pred cc----------------ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchh
Confidence 00 00001122233444567788999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHhcccCCChHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||+ +++.+.+
T Consensus 147 ~~~Gl~p~~g~~~~l~~~~G~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~~l~~~a------------------- 205 (272)
T PRK06142 147 VDLGMVADVGSLQRLPRIIGDG-HLRELALTGRDID-AAEAEKIGLVNRVYDDADALLAAA------------------- 205 (272)
T ss_pred hhhCCCCCchHHHHHHHHhCHH-HHHHHHHhCCCcC-HHHHHHcCCccEecCCHHHHHHHH-------------------
Confidence 9999999999999999999998 9999999999999 9999999999999985 5555322
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
.+||+ +|++.||.+++.+|++++...
T Consensus 206 -------------------------------------------------~~~a~----~ia~~~~~a~~~~K~~l~~~~- 231 (272)
T PRK06142 206 -------------------------------------------------HATAR----EIAAKSPLAVRGTKEVLDYMR- 231 (272)
T ss_pred -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh-
Confidence 24454 799999999999999999865
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+++..|...+..++.++|++||+.+|+ +| |+|+|++
T Consensus 232 --------~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~-~k-r~p~~~~ 272 (272)
T PRK06142 232 --------DHRVADGLRYVATWNAAMLPSKDLTEAIAAHM-EK-RPPEFTG 272 (272)
T ss_pred --------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHh-cC-CCCCCCC
Confidence 45799999999999999999999999999999 67 7999974
No 20
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=3.6e-52 Score=411.25 Aligned_cols=260 Identities=22% Similarity=0.333 Sum_probs=220.8
Q ss_pred ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCC
Q 012534 73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPL 152 (461)
Q Consensus 73 ~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (461)
++++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 14 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~-------- 84 (275)
T PLN02664 14 PNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSG-------- 84 (275)
T ss_pred CCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccc--------
Confidence 3689999999999999999999999999999999999999999999998 8999999999875421100000
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCC
Q 012534 153 KCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD 232 (461)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~ 232 (461)
+ ..........++.....++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+
T Consensus 85 ---~-----~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~ 156 (275)
T PLN02664 85 ---D-----RGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITAD 156 (275)
T ss_pred ---c-----chhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCC
Confidence 0 00000112223334456777899999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHhcccCCChHHHHHHHHHhhcCCC
Q 012534 233 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP 311 (461)
Q Consensus 233 ~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~ 311 (461)
+|++++|++++|.. ++++|++||+.++ |+||+++||||++||+ +++.+.+
T Consensus 157 ~g~~~~l~~~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~~--------------------------- 207 (275)
T PLN02664 157 LGTLQRLPSIVGYG-NAMELALTGRRFS-GSEAKELGLVSRVFGSKEDLDEGV--------------------------- 207 (275)
T ss_pred ccHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCCceeeCChhHHHHHH---------------------------
Confidence 99999999999998 9999999999999 9999999999999985 5554311
Q ss_pred CCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccc
Q 012534 312 EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNE 391 (461)
Q Consensus 312 ~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~ 391 (461)
.++|+ +|+++||.+++.+|++++...
T Consensus 208 -----------------------------------------~~~a~----~ia~~~p~a~~~~K~~l~~~~--------- 233 (275)
T PLN02664 208 -----------------------------------------RLIAE----GIAAKSPLAVTGTKAVLLRSR--------- 233 (275)
T ss_pred -----------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh---------
Confidence 13444 799999999999999999875
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 392 LSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 392 ~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.++.|...+...+.++|++||+++|+ +| |+|.|++
T Consensus 234 ~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p~~~~ 274 (275)
T PLN02664 234 ELSVEQGLDYVATWNSAMLVSDDLNEAVSAQI-QK-RKPVFAK 274 (275)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHHHHHHHh-cc-CCCCCCC
Confidence 46899999999999999999999999999999 67 8999975
No 21
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-52 Score=409.22 Aligned_cols=255 Identities=22% Similarity=0.335 Sum_probs=225.0
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
.+.+.++..+++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.... .
T Consensus 6 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~---~-- 79 (261)
T PRK08138 6 TDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAG---A-- 79 (261)
T ss_pred CCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccc---h--
Confidence 456777765689999999999999999999999999999999999999999999997 7999999999875310 0
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
...+......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus 80 ------------------------~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe 135 (261)
T PRK08138 80 ------------------------IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPE 135 (261)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcc
Confidence 00122334456778999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 136 ~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a-------------------- 193 (261)
T PRK08138 136 IKVGLMPGAGGTQRLVRAVGKF-KAMRMALTGCMVP-APEALAIGLVSEVVEDEQTLPRA-------------------- 193 (261)
T ss_pred cccccCCCCcHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHH--------------------
Confidence 9999999999999999999998 9999999999999 99999999999999987765422
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
.+||+ +|++.+|.+++.+|++++...
T Consensus 194 ------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~-- 219 (261)
T PRK08138 194 ------------------------------------------------LELAR----EIARMPPLALAQIKEVVLAGA-- 219 (261)
T ss_pred ------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh--
Confidence 14454 688899999999999999765
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+++..|.+.+..++.++|+++|+++|+ +| |+|+|++
T Consensus 220 -------~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~-~k-r~~~~~~ 260 (261)
T PRK08138 220 -------DAPLDAALALERKAFQLLFDSEDQKEGMDAFL-EK-RKPAYKG 260 (261)
T ss_pred -------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCC
Confidence 56799999999999999999999999999999 67 8999975
No 22
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.1e-52 Score=408.88 Aligned_cols=258 Identities=24% Similarity=0.368 Sum_probs=225.8
Q ss_pred CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (461)
Q Consensus 63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~ 142 (461)
+..+.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus 8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-- 83 (266)
T PRK08139 8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGL-- 83 (266)
T ss_pred ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccch--
Confidence 4566788886 799999999999999999999999999999999999999999999998 899999999987531100
Q ss_pred CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
.....++.....++.+|.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus 84 ------------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~ 139 (266)
T PRK08139 84 ------------------------AYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAV 139 (266)
T ss_pred ------------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeC
Confidence 01112344455677889999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
||+++|++|++| +++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 140 pe~~~Gl~p~~~-~~~l~r~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~----------------- 199 (266)
T PRK08139 140 PGVNIGLFCSTP-MVALSRNVPRK-QAMEMLLTGEFID-AATAREWGLVNRVVPADALDAAVA----------------- 199 (266)
T ss_pred cccCcCCCCCcc-HHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCccEeeChhHHHHHHH-----------------
Confidence 999999999775 56899999998 9999999999999 999999999999999877764222
Q ss_pred HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
+||+ +|+++||.+++.+|++++...
T Consensus 200 ---------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~ 224 (266)
T PRK08139 200 ---------------------------------------------------RLAA----VIAAKSPAAVRIGKEAFYRQA 224 (266)
T ss_pred ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc
Confidence 4444 799999999999999999875
Q ss_pred hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.++++.|...+..++.++|++||+++|+ +| |+|+|.+
T Consensus 225 ---------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 265 (266)
T PRK08139 225 ---------EMPLADAYAYAGDVMAENMMAEDAEEGIDAFL-EK-RPPEWRG 265 (266)
T ss_pred ---------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 56799999999999999999999999999999 67 8999975
No 23
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-52 Score=407.40 Aligned_cols=254 Identities=26% Similarity=0.357 Sum_probs=223.3
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 3 ~i~~~~-~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~------ 73 (257)
T PRK07658 3 FLSVRV-EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEA------ 73 (257)
T ss_pred eEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCch------
Confidence 467776 78999999999986 999999999999999999999999999999998 899999999987531100
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
.....+......++.+|..+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 74 --------------------~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~ 133 (257)
T PRK07658 74 --------------------EQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELN 133 (257)
T ss_pred --------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccc
Confidence 001113333455778899999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 134 ~Gl~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------- 190 (257)
T PRK07658 134 LGLIPGFAGTQRLPRYVGKA-KALEMMLTSEPIT-GAEALKWGLVNGVFPEETLLDDAK--------------------- 190 (257)
T ss_pred cCCCCCCcHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHcCCcCeecChhHHHHHHH---------------------
Confidence 99999999999999999997 9999999999999 999999999999999877754222
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
++|+ +|+++||.+++.+|++++...
T Consensus 191 -----------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---- 215 (257)
T PRK07658 191 -----------------------------------------------KLAK----KIAGKSPATTRAVLELLQTTK---- 215 (257)
T ss_pred -----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh----
Confidence 3444 789999999999999999765
Q ss_pred CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.++.|...+..++.++|++||+++|+ +| |+|+|++
T Consensus 216 -----~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~~ 256 (257)
T PRK07658 216 -----SSSYYEGVKREAKIFGEVFTSEDAKEGVQAFL-EK-RKPSFSG 256 (257)
T ss_pred -----cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCC
Confidence 45799999999999999999999999999999 67 8999975
No 24
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-52 Score=407.55 Aligned_cols=259 Identities=24% Similarity=0.351 Sum_probs=223.7
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++ |+++++|||+|.| ++||+|+|++++.......
T Consensus 2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-- 76 (262)
T PRK08140 2 MYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGA-- 76 (262)
T ss_pred CCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhcccccc--
Confidence 355678886 7899999999999999999999999999999999 9999999999998 8999999999874311000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHH-HHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFT-AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
. ......+. ....++..+.++||||||+|||+|+|||++|+++|||||++++++|++
T Consensus 77 ~----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~ 134 (262)
T PRK08140 77 M----------------------PDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQ 134 (262)
T ss_pred c----------------------hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEec
Confidence 0 00000111 123466788999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 135 pe~~~G~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a------------------ 194 (262)
T PRK08140 135 AFVKIGLVPDSGGTWFLPRLVGMA-RALGLALLGEKLS-AEQAEQWGLIWRVVDDAALADEA------------------ 194 (262)
T ss_pred cccccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHcCCccEeeChHHHHHHH------------------
Confidence 999999999999999999999997 9999999999999 99999999999999987765322
Q ss_pred HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
.++|+ +|+++||.+++.+|++++...
T Consensus 195 --------------------------------------------------~~~a~----~ia~~~~~a~~~~K~~l~~~~ 220 (262)
T PRK08140 195 --------------------------------------------------QQLAA----HLATQPTRGLALIKQAMNASA 220 (262)
T ss_pred --------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh
Confidence 14444 799999999999999999765
Q ss_pred hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.++++.|...+..++.++|++||+++|+ +| |+|.|.+
T Consensus 221 ---------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k-r~p~~~~ 261 (262)
T PRK08140 221 ---------TNTLDAQLDLERDLQREAGRSADYAEGVSAFL-EK-RAPRFTG 261 (262)
T ss_pred ---------hCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCCC
Confidence 56899999999999999999999999999999 67 7999975
No 25
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-52 Score=406.09 Aligned_cols=250 Identities=21% Similarity=0.264 Sum_probs=217.6
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... . .
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~--~--~-- 75 (254)
T PRK08252 4 EVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGE--R--P-- 75 (254)
T ss_pred eEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhccc--c--h--
Confidence 467776 789999999999999999999999999999999999999999999998 8999999999875310 0 0
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
. . ....+..++ ...+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 76 ------------------~--~---~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 130 (254)
T PRK08252 76 ------------------S--I---PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVK 130 (254)
T ss_pred ------------------h--h---hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhh
Confidence 0 0 001111111 24799999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. ++++|++||++++ |+||+++||||++||++++.+
T Consensus 131 ~Gl~p~~g~~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~------------------------ 184 (254)
T PRK08252 131 RGLVAAGGGLLRLPRRIPYH-IAMELALTGDMLT-AERAHELGLVNRLTEPGQALD------------------------ 184 (254)
T ss_pred cCCCCCchHHHHHHHHcCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCcchHHH------------------------
Confidence 99999999999999999998 9999999999999 999999999999999887653
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
.+.+.+++|+++||.+++.+|++++...
T Consensus 185 ------------------------------------------------~a~~~a~~l~~~~~~a~~~~K~~l~~~~---- 212 (254)
T PRK08252 185 ------------------------------------------------AALELAERIAANGPLAVAASKRIVVESG---- 212 (254)
T ss_pred ------------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhh----
Confidence 2223334799999999999999999865
Q ss_pred CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.++++.|...+..++.++|++||+++|+ +| |+|+|..
T Consensus 213 -----~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~~ 253 (254)
T PRK08252 213 -----DWSEDEMFARQRELIAPVFTSADAKEGATAFA-EK-RAPVWTG 253 (254)
T ss_pred -----cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 45799999999999999999999999999999 67 8999975
No 26
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-52 Score=408.32 Aligned_cols=252 Identities=20% Similarity=0.246 Sum_probs=218.3
Q ss_pred EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (461)
Q Consensus 69 ~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 148 (461)
.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .
T Consensus 2 ~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~-~----- 73 (255)
T PRK06563 2 SRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAG-G----- 73 (255)
T ss_pred eEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccc-h-----
Confidence 4555 689999999999999999999999999999999999999999999998 8999999999875411000 0
Q ss_pred CCCCCCCCcchhhhhhhhHHHHHHHHHHHH-HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534 149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227 (461)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l 227 (461)
..+...... +...+.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus 74 ---------------------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~ 132 (255)
T PRK06563 74 ---------------------FPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQR 132 (255)
T ss_pred ---------------------hhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhc
Confidence 001111112 2235789999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534 228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307 (461)
Q Consensus 228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~ 307 (461)
|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 133 Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a----------------------- 187 (255)
T PRK06563 133 GILPFGGATLRFPQAAGWG-NAMRYLLTGDEFD-AQEALRLGLVQEVVPPGEQLERA----------------------- 187 (255)
T ss_pred CCCCCccHHHHHHHHhhHH-HHHHHHHcCCCcC-HHHHHHcCCCcEeeCHHHHHHHH-----------------------
Confidence 9999999999999999998 9999999999999 99999999999999987765422
Q ss_pred cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534 308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 387 (461)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~ 387 (461)
.+||+ +|+++||.+++.+|++++...
T Consensus 188 ---------------------------------------------~~~a~----~la~~~~~a~~~~K~~~~~~~----- 213 (255)
T PRK06563 188 ---------------------------------------------IELAE----RIARAAPLGVQATLASARAAV----- 213 (255)
T ss_pred ---------------------------------------------HHHHH----HHHhcCHHHHHHHHHHHHHhh-----
Confidence 14554 789999999999999999765
Q ss_pred CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.++++.|...+..++.++|++||+++|+ +| |+|+|++
T Consensus 214 ----~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 254 (255)
T PRK06563 214 ----REGEAAAAAQLPPELRPLFTSEDAKEGVQAFL-ER-RPARFKG 254 (255)
T ss_pred ----cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 46899999999999999999999999999999 67 8999975
No 27
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=4.8e-52 Score=406.33 Aligned_cols=254 Identities=25% Similarity=0.361 Sum_probs=220.3
Q ss_pred EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (461)
Q Consensus 69 ~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 148 (461)
.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||||.| ++||+|+|++++..... . .
T Consensus 2 ~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~-~--~---- 71 (256)
T TIGR02280 2 LSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPG-G--A---- 71 (256)
T ss_pred eEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccc-c--c----
Confidence 4565 7899999999999999999999999999999999999 9999999998 89999999998753110 0 0
Q ss_pred CCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccC
Q 012534 149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG 228 (461)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lG 228 (461)
... ...+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|
T Consensus 72 ---------------~~~--~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG 134 (256)
T TIGR02280 72 ---------------PDL--GRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIG 134 (256)
T ss_pred ---------------hhH--HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcC
Confidence 000 000111123466789999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhc
Q 012534 229 LFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS 308 (461)
Q Consensus 229 l~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~ 308 (461)
++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 135 ~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~----------------------- 189 (256)
T TIGR02280 135 LIPDSGGTWSLPRLVGRA-RAMGLAMLGEKLD-ARTAASWGLIWQVVDDAALMDEAQ----------------------- 189 (256)
T ss_pred CCCCccHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCcceeeChHHHHHHHH-----------------------
Confidence 999999999999999997 9999999999999 999999999999999877654222
Q ss_pred CCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCC
Q 012534 309 SDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKT 388 (461)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~ 388 (461)
+||+ +|++.||.+++.+|++++...
T Consensus 190 ---------------------------------------------~~a~----~la~~~~~~~~~~K~~l~~~~------ 214 (256)
T TIGR02280 190 ---------------------------------------------ALAV----HLAAQPTRGLALTKRAIQAAA------ 214 (256)
T ss_pred ---------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh------
Confidence 4454 799999999999999999865
Q ss_pred ccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 389 DNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 389 ~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
...+.+.++.|.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus 215 ---~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 255 (256)
T TIGR02280 215 ---TNSLDTQLDLERDLQRELGRSADYAEGVTAFL-DK-RNPQFTG 255 (256)
T ss_pred ---cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHH-cC-CCCCCCC
Confidence 46799999999999999999999999999999 67 8999975
No 28
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-52 Score=408.52 Aligned_cols=260 Identities=21% Similarity=0.305 Sum_probs=223.0
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus 2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 2 MYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCch
Confidence 356688886 789999999999999999999999999999999999999999999998 899999999987532110000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
...........++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 80 ------------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~p 135 (262)
T PRK05995 80 ------------------------ENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLS 135 (262)
T ss_pred ------------------------hhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCc
Confidence 00011233456778899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++ +|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.
T Consensus 136 e~~~Gl~p~~g~~-~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------ 194 (262)
T PRK05995 136 EVRLGLIPATISP-YVIRAMGER-AARRYFLTAERFD-AAEALRLGLVHEVVPAEALDAKVD------------------ 194 (262)
T ss_pred ccccccCccchHH-HHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCCeecCHHHHHHHHH------------------
Confidence 9999999988876 488999998 9999999999999 999999999999999877654222
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
++|+ +|++.||.+++.+|++++...
T Consensus 195 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~- 219 (262)
T PRK05995 195 --------------------------------------------------ELLA----ALVANSPQAVRAGKRLVRDVA- 219 (262)
T ss_pred --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh-
Confidence 4444 789999999999999999765
Q ss_pred hcCCCccccCCHHHH-HHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~-l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
..++.+. ++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus 220 --------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-~k-r~p~~~~~ 262 (262)
T PRK05995 220 --------GRPIDAALIADTASRIALIRATEEAREGVAAFL-EK-RKPAWRGR 262 (262)
T ss_pred --------cCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCCCC
Confidence 4578888 8888888888999999999999999 67 89999864
No 29
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-51 Score=408.42 Aligned_cols=258 Identities=22% Similarity=0.315 Sum_probs=224.9
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~---- 91 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMD---- 91 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccC----
Confidence 677877 789999999999999999999999999999999999999999999998 89999999998743110000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
......+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 92 -------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~ 152 (277)
T PRK08258 92 -------------------MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTR 152 (277)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccc
Confidence 0011123333456778899999999999999999999999999999999999999999999
Q ss_pred cCCCC-CchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 227 IGLFP-DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 227 lGl~P-~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
+|++| ++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 153 ~Gl~p~~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a--------------------- 209 (277)
T PRK08258 153 VGLAGADMGACALLPRIIGQG-RASELLYTGRSMS-AEEGERWGFFNRLVEPEELLAEA--------------------- 209 (277)
T ss_pred cCcCCCCchHHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHcCCCcEecCHHHHHHHH---------------------
Confidence 99995 789999999999998 9999999999999 99999999999999987765322
Q ss_pred hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
.++|+ +|+++||.+++.+|++++...
T Consensus 210 -----------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~--- 235 (277)
T PRK08258 210 -----------------------------------------------QALAR----RLAAGPTFAHGMTKTMLHQEW--- 235 (277)
T ss_pred -----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhc---
Confidence 14444 799999999999999999865
Q ss_pred CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.++.|...+..++.++|++||+++|+ +| |+|+|++
T Consensus 236 ------~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~~~~ 276 (277)
T PRK08258 236 ------DMGLEEAIEAEAQAQAICMQTEDFRRAYEAFV-AK-RKPVFEG 276 (277)
T ss_pred ------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 56899999999999999999999999999999 67 8999975
No 30
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.1e-52 Score=406.57 Aligned_cols=261 Identities=21% Similarity=0.297 Sum_probs=223.5
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNL-DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~-~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (461)
.+.++. +++|++||||||+++|+||. +|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...........
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (266)
T PRK09245 4 FLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGSP 81 (266)
T ss_pred ceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhccccccccc
Confidence 477776 78999999999999999995 9999999999999999999999999998 89999999999753211000000
Q ss_pred CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534 146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 225 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~ 225 (461)
......+...+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus 82 --------------------~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~ 141 (266)
T PRK09245 82 --------------------ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFV 141 (266)
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEccccc
Confidence 000011222234567789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 142 ~~G~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a--------------------- 198 (266)
T PRK09245 142 KLGLIPGDGGAWLLPRIIGMA-RAAEMAFTGDAID-AATALEWGLVSRVVPADQLLPAA--------------------- 198 (266)
T ss_pred ccCcCCCcchhhhHHHHhhHH-HHHHHHHcCCCcC-HHHHHHcCCcceecCHHHHHHHH---------------------
Confidence 999999999999999999997 9999999999999 99999999999999987765422
Q ss_pred hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
.+|++ +|+++||.+++.+|++++...
T Consensus 199 -----------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~--- 224 (266)
T PRK09245 199 -----------------------------------------------RALAE----RIAANPPHALRLTKRLLREGQ--- 224 (266)
T ss_pred -----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh---
Confidence 24444 799999999999999999865
Q ss_pred CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.+..|......++.++|++||+++|+ +| |+|.|++
T Consensus 225 ------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 265 (266)
T PRK09245 225 ------HASLDTLLELSAAYQALAHHTADHREAVDAFL-EK-RPPVFTG 265 (266)
T ss_pred ------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHH-cC-CCCCCCC
Confidence 45799999999999999999999999999999 67 8999975
No 31
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=4.6e-52 Score=406.41 Aligned_cols=255 Identities=20% Similarity=0.232 Sum_probs=213.7
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
|+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++... ....
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~---~~~~ 76 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG---YDGR 76 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc---ccch
Confidence 34577776 7899999999999999999999999999999999999999999999986799999999987421 0000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
..+......++..|.++||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus 77 -------------------------~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe 131 (256)
T TIGR03210 77 -------------------------GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVG 131 (256)
T ss_pred -------------------------hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEeccc
Confidence 0011223456778999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 132 ~~~G~~~~~~~~~~l~~~vG~~-~A~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------- 190 (256)
T TIGR03210 132 PKVGSVDPGYGTALLARVVGEK-KAREIWYLCRRYT-AQEALAMGLVNAVVPHDQLDAEVQ------------------- 190 (256)
T ss_pred ccccccCCccHHHHHHHHhCHH-HHHHHHHhCCCcC-HHHHHHcCCceeeeCHHHHHHHHH-------------------
Confidence 9999998888899999999998 9999999999999 999999999999999877654222
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
++|+ +|+++||.+++.+|++++....
T Consensus 191 -------------------------------------------------~~a~----~ia~~~~~a~~~~K~~l~~~~~- 216 (256)
T TIGR03210 191 -------------------------------------------------KWCD----EIVEKSPTAIAIAKRSFNMDTA- 216 (256)
T ss_pred -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhhc-
Confidence 4444 7999999999999999987541
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
...-.+. .|...+..++.++|++||+++|+ +| |+|+|++
T Consensus 217 -------~~~~~~~--~~~~~~~~~~~~~d~~e~~~af~-~k-r~p~~~~ 255 (256)
T TIGR03210 217 -------HQRGIAG--MGMYALKLYYDTAESREGVKAFQ-EK-RKPEFRK 255 (256)
T ss_pred -------ccchHHH--HHHHHHHHHccChhHHHHHHHHh-cc-CCCCCCC
Confidence 1111112 24456677889999999999999 67 8999975
No 32
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-52 Score=405.48 Aligned_cols=259 Identities=23% Similarity=0.349 Sum_probs=220.9
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
++.+.+++.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.........
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~- 80 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADRA- 80 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccchh-
Confidence 456778763468999999999999999999999999999999999999999999998 899999999987532110000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
........+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus 81 -----------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe 137 (262)
T PRK07468 81 -----------------------TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTE 137 (262)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCch
Confidence 001122334557788999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|+++++++ +|.. ++++|++||++++ |+||+++||||++||.+++.+.+.
T Consensus 138 ~~~Gl~p~~g~~~~~~~-vG~~-~a~~lll~g~~~~-a~eA~~~Glv~~v~~~~~l~~~~~------------------- 195 (262)
T PRK07468 138 TRLGLIPATISPYVVAR-MGEA-NARRVFMSARLFD-AEEAVRLGLLSRVVPAERLDAAVE------------------- 195 (262)
T ss_pred hccCCCcccchhhHHhh-ccHH-HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHH-------------------
Confidence 99999999999986654 8997 9999999999999 999999999999999876653222
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
++|+ +|++++|.+++.+|++++...
T Consensus 196 -------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~-- 220 (262)
T PRK07468 196 -------------------------------------------------AEVT----PYLSCAPGAVAAAKALVRALG-- 220 (262)
T ss_pred -------------------------------------------------HHHH----HHHhcCHHHHHHHHHHHHhhh--
Confidence 3444 789999999999999998754
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
...+.+.++.|...+..++.++|++||+++|+ +| |+|+|+.
T Consensus 221 -------~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~-~k-r~~~~~~ 261 (262)
T PRK07468 221 -------APIDEAVIDATIEALADTWETEEAREGIAAFF-DK-RAPAWRG 261 (262)
T ss_pred -------ccChHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCCC
Confidence 44678999999999999999999999999999 67 8999964
No 33
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=6.2e-52 Score=406.13 Aligned_cols=257 Identities=20% Similarity=0.263 Sum_probs=216.8
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (461)
Q Consensus 66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (461)
+.+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++....... .
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~-- 78 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYID-D-- 78 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccc-h--
Confidence 3466665368999999999999999999999999999999999999999999999867999999999864210000 0
Q ss_pred CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534 146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 225 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~ 225 (461)
.. . .. .....++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus 79 ------------------~~---~-~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~ 135 (259)
T TIGR01929 79 ------------------SG---V-HR-LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGP 135 (259)
T ss_pred ------------------hh---H-HH-HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCccc
Confidence 00 0 00 1123466788999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 136 ~~G~~p~~~~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a--------------------- 192 (259)
T TIGR01929 136 KVGSFDGGYGSSYLARIVGQK-KAREIWFLCRQYD-AEQALDMGLVNTVVPLADLEKET--------------------- 192 (259)
T ss_pred ccccCCCccHHHHHHHHhHHH-HHHHHHHhCCccC-HHHHHHcCCcccccCHHHHHHHH---------------------
Confidence 999999999999999999998 9999999999999 99999999999999987765322
Q ss_pred hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
.++|+ +|++.||.+++.+|++++...
T Consensus 193 -----------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~--- 218 (259)
T TIGR01929 193 -----------------------------------------------VRWCR----EILQKSPMAIRMLKAALNADC--- 218 (259)
T ss_pred -----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh---
Confidence 24444 799999999999999998754
Q ss_pred CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
. .....+..|...+...+.++|++||+++|+ +| |+|+|+.
T Consensus 219 ------~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~~~~ 258 (259)
T TIGR01929 219 ------D-GQAGLQELAGNATMLFYMTEEGQEGRNAFL-EK-RQPDFSK 258 (259)
T ss_pred ------c-cchHHHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCC
Confidence 2 234556667788888999999999999999 67 8999974
No 34
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-51 Score=403.45 Aligned_cols=250 Identities=21% Similarity=0.287 Sum_probs=219.8
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
...+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... .
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~---- 79 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLD-Q---- 79 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcC-h----
Confidence 34577776578999999999999999999999999999999999999999999999867999999999875311 0
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.....+...+..++..|.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus 80 ----------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 137 (256)
T PRK06143 80 ----------------------ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPE 137 (256)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCc
Confidence 0111234445667888999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|+ |++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 138 ~~~G~-p~~~~~~~l~~~iG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------- 195 (256)
T PRK06143 138 VRVGI-PSVIHAALLPRLIGWA-RTRWLLLTGETID-AAQALAWGLVDRVVPLAELDAAVE------------------- 195 (256)
T ss_pred cccCC-CCccHHHHHHHhcCHH-HHHHHHHcCCcCC-HHHHHHCCCcCeecCHHHHHHHHH-------------------
Confidence 99998 8888899999999998 9999999999999 999999999999999877654222
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
++|+ +|+.+||.+++.+|++++...
T Consensus 196 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-- 220 (256)
T PRK06143 196 -------------------------------------------------RLAA----SLAGCGPQALRQQKRLLREWE-- 220 (256)
T ss_pred -------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHHc--
Confidence 4444 799999999999999999865
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 426 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K 426 (461)
..++.+.+..|...+..++.++|++||+++|+ +|
T Consensus 221 -------~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek 254 (256)
T PRK06143 221 -------DMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFL-NR 254 (256)
T ss_pred -------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHH-hh
Confidence 56899999999999999999999999999999 66
No 35
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-51 Score=403.77 Aligned_cols=255 Identities=28% Similarity=0.370 Sum_probs=223.9
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
++.+.++. +++|++||||||+++|++|.+|+.+|.++++.+ .|+++|+|||+|.| ++||+|+|++++......
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~---- 77 (260)
T PRK07659 5 MESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDE---- 77 (260)
T ss_pred CceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCc----
Confidence 35588887 789999999999999999999999999999999 58899999999998 899999999987531100
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.....++....+++..+..+||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus 78 ----------------------~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe 135 (260)
T PRK07659 78 ----------------------SKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNF 135 (260)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCch
Confidence 0112244555667888999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++| ++++.+.+
T Consensus 136 ~~~Gl~p~~g~~~~L~~~vg~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv-~~~~~~~a-------------------- 192 (260)
T PRK07659 136 IGIGLIPDGGGHFFLQKRVGEN-KAKQIIWEGKKLS-ATEALDLGLIDEVI-GGDFQTAA-------------------- 192 (260)
T ss_pred hhcCCCCCCchhhhHHHhcCHH-HHHHHHHhCCccC-HHHHHHcCChHHHh-hhHHHHHH--------------------
Confidence 9999999999999999999998 9999999999999 99999999999999 66665322
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
.++++ +|+++||.+++.+|++++...
T Consensus 193 ------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~~-- 218 (260)
T PRK07659 193 ------------------------------------------------KQKIS----EWLQKPLKAMIETKQIYCELN-- 218 (260)
T ss_pred ------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh--
Confidence 13444 799999999999999999765
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.++.|.+.+...+.++|++||+.+|+ +| |+|+|++
T Consensus 219 -------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~~ 259 (260)
T PRK07659 219 -------RSQLEQVLQLEKRAQYAMRQTADHKEGIRAFL-EK-RLPVFKG 259 (260)
T ss_pred -------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHh-cC-CCCCCCC
Confidence 56899999999999999999999999999999 67 8999975
No 36
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-51 Score=404.97 Aligned_cols=263 Identities=23% Similarity=0.367 Sum_probs=225.8
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP-RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~-~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~ 142 (461)
.|+.+.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+ ++|+|||||.| ++||+|+|++++........
T Consensus 2 ~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 2 QFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhccccccc
Confidence 467788887 6899999999999999999999999999999999876 49999999998 89999999998753110000
Q ss_pred CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
.. ......+...+..++.+|.++||||||+|||+|+|||++|+++||||||+++++|++
T Consensus 80 ~~---------------------~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~ 138 (266)
T PRK05981 80 SG---------------------GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQ 138 (266)
T ss_pred cc---------------------chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEec
Confidence 00 000011223345677889999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++|||+++||++++.+.+
T Consensus 139 ~e~~lG~~p~~g~~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a------------------ 198 (266)
T PRK05981 139 AFRRIGLVPDGGSTWLLPRLVGKA-RAMELSLLGEKLP-AETALQWGLVNRVVDDAELMAEA------------------ 198 (266)
T ss_pred hHhhcCCCCCccHHHHHHHHhHHH-HHHHHHHhCCCcC-HHHHHHcCCceEeeCHhHHHHHH------------------
Confidence 999999999999999999999997 9999999999999 99999999999999987765422
Q ss_pred HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
.+||+ +|+..||.+++.+|++++...
T Consensus 199 --------------------------------------------------~~~a~----~l~~~~~~a~~~~K~~~~~~~ 224 (266)
T PRK05981 199 --------------------------------------------------MKLAH----ELANGPTVALGLIRKLYWDSP 224 (266)
T ss_pred --------------------------------------------------HHHHH----HHHcCCHHHHHHHHHHHHHhh
Confidence 14554 788999999999999998765
Q ss_pred hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.++.|...+..++.++|++||+.+|+ +| |+|+|++
T Consensus 225 ---------~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~-~k-r~~~~~~ 265 (266)
T PRK05981 225 ---------ENDFEEQLNLEREAQRIAGKTEDFKEGVGAFL-QK-RPAQFKG 265 (266)
T ss_pred ---------hcCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCCC
Confidence 46799999999999999999999999999999 67 8999975
No 37
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.2e-52 Score=406.17 Aligned_cols=260 Identities=23% Similarity=0.329 Sum_probs=219.6
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.|+.|.++.++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .
T Consensus 3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~ 80 (265)
T PRK05674 3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLD-Y 80 (265)
T ss_pred CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhccccc-c
Confidence 3677888874478999999999999999999999999999999999999999999998 8999999999875311000 0
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
. ........+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 81 ~-----------------------~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~p 137 (265)
T PRK05674 81 N-----------------------TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLS 137 (265)
T ss_pred h-----------------------hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCc
Confidence 0 00011223346777899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++ ++++++|.. ++++|+|||+.|+ |+||+++|||+++||++++.+.+
T Consensus 138 e~~~Gi~p~~~~~-~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a------------------- 195 (265)
T PRK05674 138 EVRIGLAPAVISP-FVVKAIGER-AARRYALTAERFD-GRRARELGLLAESYPAAELEAQV------------------- 195 (265)
T ss_pred ccccCCCcchhHH-HHHHHhCHH-HHHHHHHhCcccC-HHHHHHCCCcceecCHHHHHHHH-------------------
Confidence 9999999988766 488999998 9999999999999 99999999999999987765422
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
.+||+ +|+++||.+++.+|++++...
T Consensus 196 -------------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~- 221 (265)
T PRK05674 196 -------------------------------------------------EAWIA----NLLLNSPQALRASKDLLREVG- 221 (265)
T ss_pred -------------------------------------------------HHHHH----HHHhcCHHHHHHHHHHHHHhh-
Confidence 24554 799999999999999999876
Q ss_pred hcCCCccccCCHHHHHHH-HHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKY-EYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~-E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.+.+.. +...+..++.++|++||+++|+ +| |+|+|+.
T Consensus 222 --------~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~-~k-r~p~~~~ 263 (265)
T PRK05674 222 --------DGELSPALRRYCENAIARIRVSAEGQEGLRAFL-EK-RTPAWQT 263 (265)
T ss_pred --------ccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cc-CCCCCCC
Confidence 4567777765 4466777889999999999999 67 8999974
No 38
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=9.8e-52 Score=405.08 Aligned_cols=257 Identities=17% Similarity=0.238 Sum_probs=221.9
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecC-CCccccCCChhhHHHHhhhcC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG-PRAFCAGMDIKGVVAEIQKDR 142 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G-~~~FcaG~Dl~~~~~~~~~~~ 142 (461)
+++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||||.| +++||+|+|++++.... ..
T Consensus 2 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~-~~- 77 (261)
T PRK11423 2 SMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG-RD- 77 (261)
T ss_pred CccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc-cc-
Confidence 466788887 7899999999999999999999999999999999988 9999999974 48999999999874310 00
Q ss_pred CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++
T Consensus 78 --------------------------~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~ 131 (261)
T PRK11423 78 --------------------------PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAM 131 (261)
T ss_pred --------------------------HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecC
Confidence 001223345677889999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
||+++|++|++|+++++++++|.. ++++|+++|++++ |+||+++||||+|||++++.+
T Consensus 132 pe~~~Gl~~~~g~~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~l~~-------------------- 189 (261)
T PRK11423 132 TPANLGVPYNLSGILNFTNDAGFH-IVKEMFFTASPIT-AQRALAVGILNHVVEVEELED-------------------- 189 (261)
T ss_pred chhhcCCCCCccHHHHHHHHhHHH-HHHHHHHcCCCcC-HHHHHHcCCcCcccCHHHHHH--------------------
Confidence 999999999999999999999998 9999999999999 999999999999999877653
Q ss_pred HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
.+.+++++|+++||.+++.+|++++...
T Consensus 190 ----------------------------------------------------~a~~~a~~l~~~~~~a~~~~K~~~~~~~ 217 (261)
T PRK11423 190 ----------------------------------------------------FTLQMAHHISEKAPLAIAVIKEQLRVLG 217 (261)
T ss_pred ----------------------------------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 2333344799999999999999998653
Q ss_pred hhcCCCccccCCH-HHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 383 SAHGKTDNELSKL-SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 383 ~~~~~~~~~~~~l-~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
....+ .++++.|.+....++.++|++||+.+|+ +| |+|+|++
T Consensus 218 --------~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~-~k-r~p~~~~ 260 (261)
T PRK11423 218 --------EAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFL-EK-RKPVFVG 260 (261)
T ss_pred --------ccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHh-cc-CCCCCCC
Confidence 11233 6888889899899999999999999999 67 8999975
No 39
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-51 Score=403.57 Aligned_cols=255 Identities=24% Similarity=0.333 Sum_probs=218.3
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
..+.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......
T Consensus 6 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~-- 82 (262)
T PRK06144 6 STDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAE-- 82 (262)
T ss_pred CCCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchh--
Confidence 455688886 78999999999999999999999999999999999999999999999867999999999875311000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
....+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 83 ------------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~p 138 (262)
T PRK06144 83 ------------------------DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFP 138 (262)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeech
Confidence 01113333456777899999999999999999999999999999999999999999
Q ss_pred ccc-cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 224 ENG-IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 224 e~~-lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
|++ +|++|++|++++|++++|.. +++++++||+.++ |+||+++||||++||++++.+.+.
T Consensus 139 e~~~~G~~p~~g~~~~l~~~vG~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~----------------- 199 (262)
T PRK06144 139 IARTLGNCLSMSNLARLVALLGAA-RVKDMLFTARLLE-AEEALAAGLVNEVVEDAALDARAD----------------- 199 (262)
T ss_pred hHHhccCCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHcCCcCeecCHHHHHHHHH-----------------
Confidence 997 99999999999999999998 9999999999999 999999999999999877654221
Q ss_pred HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
+||+ +|+++||.+++.+|+.++...
T Consensus 200 ---------------------------------------------------~~a~----~i~~~~~~a~~~~K~~l~~~~ 224 (262)
T PRK06144 200 ---------------------------------------------------ALAE----LLAAHAPLTLRATKEALRRLR 224 (262)
T ss_pred ---------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh
Confidence 4444 799999999999999998754
Q ss_pred hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
...+ +.+.+.+..++.++|++||+++|+ +| |+|+|++
T Consensus 225 ---------~~~l----~~~~~~~~~~~~~~~~~e~~~af~-~k-r~p~~~~ 261 (262)
T PRK06144 225 ---------REGL----PDGDDLIRMCYMSEDFREGVEAFL-EK-RPPKWKG 261 (262)
T ss_pred ---------hcCH----HHHHHHHHHHhcChHHHHHHHHHh-cC-CCCCCCC
Confidence 2233 445567777889999999999999 67 8999975
No 40
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2e-51 Score=403.03 Aligned_cols=253 Identities=23% Similarity=0.386 Sum_probs=219.0
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......
T Consensus 4 ~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~----- 76 (261)
T PRK03580 4 SLHTTR-NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD----- 76 (261)
T ss_pred eEEEEE-ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-----
Confidence 477776 7899999999996 599999999999999999999999999999999867999999999875311000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
. .+....+..+.++..+||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 77 -----------------~------~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 133 (261)
T PRK03580 77 -----------------A------DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAK 133 (261)
T ss_pred -----------------h------hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccc
Confidence 0 01111234566789999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. +++++++||+.++ |+||+++|||+++||++++.+.+.
T Consensus 134 ~G~~p~~g~~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------- 190 (261)
T PRK03580 134 LGIVPDSGGVLRLPKRLPPA-IANEMVMTGRRMD-AEEALRWGIVNRVVPQAELMDRAR--------------------- 190 (261)
T ss_pred cCcCCCccHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCCcEecCHhHHHHHHH---------------------
Confidence 99999999999999999998 9999999999999 999999999999999877764222
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
+||+ +|++++|.+++.+|++++...
T Consensus 191 -----------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---- 215 (261)
T PRK03580 191 -----------------------------------------------ELAQ----QLVNSAPLAIAALKEIYRETS---- 215 (261)
T ss_pred -----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh----
Confidence 4444 799999999999999999865
Q ss_pred CCccccCCHHHHHHHHHH----HHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 387 KTDNELSKLSGVMKYEYR----VALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 387 ~~~~~~~~l~~~l~~E~~----~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.++++.|.. .+..++.++|++||+++|+ +| |+|+|+.
T Consensus 216 -----~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~-ek-r~~~~~~ 260 (261)
T PRK03580 216 -----EMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFA-EK-RDPVWKG 260 (261)
T ss_pred -----cCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHh-cC-CCCCCCC
Confidence 5679999998874 6677899999999999999 67 8999975
No 41
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-51 Score=404.29 Aligned_cols=259 Identities=20% Similarity=0.248 Sum_probs=217.7
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.|+.|.++.++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus 9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--- 84 (268)
T PRK07327 9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADD--- 84 (268)
T ss_pred CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCc---
Confidence 4677888864578999999999999999999999999999999999999999999998 899999999987531100
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
......++...+.++..|..+||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 85 ----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~p 142 (268)
T PRK07327 85 ----------------------FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDG 142 (268)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCc
Confidence 0011123444456778899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|++++|.. ++++|++||++++ |+||+++|||+++||++++.+.+.
T Consensus 143 e~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------ 202 (268)
T PRK07327 143 HTRLGVAAGDHAAIVWPLLCGMA-KAKYYLLLCEPVS-GEEAERIGLVSLAVDDDELLPKAL------------------ 202 (268)
T ss_pred ccccCCCCCcchhhHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHH------------------
Confidence 99999999999999999999998 9999999999999 999999999999999877654222
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
++|+ +|+++||.+++.+|++++....
T Consensus 203 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~~ 228 (268)
T PRK07327 203 --------------------------------------------------EVAE----RLAAGSQTAIRWTKYALNNWLR 228 (268)
T ss_pred --------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhhh
Confidence 3444 7999999999999999996531
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
. ....+.+.+..| ...+.++|++||+.+|+ +| |+|+|++
T Consensus 229 ~------~~~~~~~~~~~~----~~~~~~~d~~eg~~af~-ek-r~p~~~~ 267 (268)
T PRK07327 229 M------AGPTFDTSLALE----FMGFSGPDVREGLASLR-EK-RAPDFPG 267 (268)
T ss_pred h------hhhhHHHHHHHH----HHHccChhHHHHHHHHH-hc-CCCCCCC
Confidence 0 012355555544 34678999999999999 67 8999975
No 42
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-51 Score=400.71 Aligned_cols=255 Identities=24% Similarity=0.328 Sum_probs=224.9
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (461)
+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~----- 77 (260)
T PRK07511 5 LLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPP----- 77 (260)
T ss_pred eEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccc-----
Confidence 66776 789999999999999999999999999999999999999999999997 89999999998754110000
Q ss_pred CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534 148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227 (461)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l 227 (461)
.....++...+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 78 -------------------~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~ 138 (260)
T PRK07511 78 -------------------SVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKV 138 (260)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEecccccc
Confidence 0112244555677888999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534 228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307 (461)
Q Consensus 228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~ 307 (461)
|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+
T Consensus 139 Gl~p~~g~~~~l~~~vg~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~~~~a----------------------- 193 (260)
T PRK07511 139 GLTPDGGGSWFLARALPRQ-LATELLLEGKPIS-AERLHALGVVNRLAEPGQALAEA----------------------- 193 (260)
T ss_pred CcCCCchHHHHHHHHhCHH-HHHHHHHhCCCCC-HHHHHHcCCccEeeCchHHHHHH-----------------------
Confidence 9999999999999999997 9999999999999 99999999999999987765421
Q ss_pred cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534 308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 387 (461)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~ 387 (461)
.+||+ +|+++||.+++.+|++++...
T Consensus 194 ---------------------------------------------~~~a~----~l~~~~~~~~~~~K~~l~~~~----- 219 (260)
T PRK07511 194 ---------------------------------------------LALAD----QLAAGSPNALARIKSLIADAP----- 219 (260)
T ss_pred ---------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh-----
Confidence 14554 788999999999999999875
Q ss_pred CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534 388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 433 (461)
Q Consensus 388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~ 433 (461)
..++.++++.|...+..++.++|+++|+++|+ +| ++|+|+
T Consensus 220 ----~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~-~~-r~~~~~ 259 (260)
T PRK07511 220 ----EATLAAQLEAERDHFVASLHHADALEGIAAFL-EK-RAPDYK 259 (260)
T ss_pred ----cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cc-CCCCCC
Confidence 56899999999999999999999999999999 66 799996
No 43
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=4.7e-51 Score=401.01 Aligned_cols=259 Identities=20% Similarity=0.286 Sum_probs=221.7
Q ss_pred cccCCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhh
Q 012534 60 AAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ 139 (461)
Q Consensus 60 ~~~~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~ 139 (461)
+.+.+.+.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....
T Consensus 3 ~~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~ 81 (265)
T PLN02888 3 TQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFK 81 (265)
T ss_pred cccCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhcc
Confidence 33445677888754689999999999999999999999999999999999999999999998 89999999998643110
Q ss_pred hcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCce
Q 012534 140 KDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL 219 (461)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~ 219 (461)
.. .......++..|..+||||||+|||+|+|||++|+++|||||++++++
T Consensus 82 ~~------------------------------~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~ 131 (265)
T PLN02888 82 GD------------------------------VKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAK 131 (265)
T ss_pred ch------------------------------hhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCE
Confidence 00 000113455678899999999999999999999999999999999999
Q ss_pred EeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHH
Q 012534 220 LAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD 299 (461)
Q Consensus 220 f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~ 299 (461)
|++||+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+
T Consensus 132 f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a--------------- 194 (265)
T PLN02888 132 FIDTHAKFGIFPSWGLSQKLSRIIGAN-RAREVSLTAMPLT-AETAERWGLVNHVVEESELLKKA--------------- 194 (265)
T ss_pred ecCccccccCCCCccHhhHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCccEeeChHHHHHHH---------------
Confidence 999999999999999999999999997 9999999999999 99999999999999987765322
Q ss_pred HHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 012534 300 IVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFS 379 (461)
Q Consensus 300 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~ 379 (461)
.++|+ +|++.+|.+++.+|++++
T Consensus 195 -----------------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~ 217 (265)
T PLN02888 195 -----------------------------------------------------REVAE----AIIKNNQGMVLRYKSVIN 217 (265)
T ss_pred -----------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHH
Confidence 14444 799999999999999999
Q ss_pred HHhhhcCCCccccCCHHHHHHHHHHHHHhhc--CCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 380 KVASAHGKTDNELSKLSGVMKYEYRVALRSS--LRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~--~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
... ..++.+.+..|...+..++ .++|++||+++|+ +| |+|+-.+
T Consensus 218 ~~~---------~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~-ek-r~~~~~~ 263 (265)
T PLN02888 218 DGL---------KLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFI-AG-RSSKKPS 263 (265)
T ss_pred Hhh---------cCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-hc-CCCCCCC
Confidence 765 4678999999988777764 5999999999999 67 6776544
No 44
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=5.5e-51 Score=402.63 Aligned_cols=253 Identities=25% Similarity=0.312 Sum_probs=216.7
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.|+.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus 6 ~~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~- 82 (275)
T PRK09120 6 RWDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDAQP- 82 (275)
T ss_pred ccccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccccch-
Confidence 367788887 789999999999999999999999999999999999999999999998 89999999998753211000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
. ..........+.++..|..+||||||+|||+|+|||++|+++||+||++++++|++|
T Consensus 83 ---------------------~-~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~p 140 (275)
T PRK09120 83 ---------------------E-ILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLS 140 (275)
T ss_pred ---------------------h-HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCC
Confidence 0 001112223345677899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++|||+++||++++.+.+.
T Consensus 141 e~~~Gl~p~~g~~~~l~~~iG~~-~a~~llltg~~~~-A~eA~~~Glv~~vv~~~~l~~~a~------------------ 200 (275)
T PRK09120 141 EINWGIPPGGGVSKAMADTVGHR-DALYYIMTGETFT-GRKAAEMGLVNESVPLAQLRARTR------------------ 200 (275)
T ss_pred ccccCCCCCcchHHHHHHHcCHH-HHHHHHhcCCccC-HHHHHHcCCcceecCHHHHHHHHH------------------
Confidence 99999999999999999999998 9999999999999 999999999999999888764222
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
++|+ +|+++||.+++.+|++++...
T Consensus 201 --------------------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~- 225 (275)
T PRK09120 201 --------------------------------------------------ELAA----KLLEKNPVVLRAAKDGFKRVR- 225 (275)
T ss_pred --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHH-
Confidence 4444 799999999999999999876
Q ss_pred hcCCCccccCCHHHHHHHHHHH--HHhhcCCC-cHHHHHHhhhc
Q 012534 384 AHGKTDNELSKLSGVMKYEYRV--ALRSSLRS-DFAEGVRAVLV 424 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~--~~~~~~s~-d~~egv~afl~ 424 (461)
..++.+.++.|... ....+.++ |++||+++|++
T Consensus 226 --------~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~ 261 (275)
T PRK09120 226 --------ELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLD 261 (275)
T ss_pred --------hCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 56789998887644 44568888 89999999995
No 45
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-51 Score=404.37 Aligned_cols=267 Identities=25% Similarity=0.368 Sum_probs=224.9
Q ss_pred CCccceEEEEecC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534 63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141 (461)
Q Consensus 63 ~~~~~i~~~~~~~-~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~ 141 (461)
+.|+.+.+++ ++ +|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSD 79 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCccc
Confidence 3467788887 67 8999999999999999999999999999999999999999999998 8999999999875421100
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhHHH-HHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534 142 RNTPLVPKVPLKCGDVKEISTQNQLSEM-IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 220 (461)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f 220 (461)
.... ...... .......+.++..|.++||||||+|||+|+|||++|+++||+||++++++|
T Consensus 80 ~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f 141 (272)
T PRK06210 80 GRRD------------------TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKF 141 (272)
T ss_pred cccc------------------ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEE
Confidence 0000 000000 001111234567899999999999999999999999999999999999999
Q ss_pred eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534 221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI 300 (461)
Q Consensus 221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~ 300 (461)
++||+++|++|++|++++|++++|.. ++++|+|||+.++ |+||+++||||++||++++.+.+
T Consensus 142 ~~pe~~~Gl~p~~g~~~~l~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a---------------- 203 (272)
T PRK06210 142 TTAFARRGLIAEHGISWILPRLVGHA-NALDLLLSARTFY-AEEALRLGLVNRVVPPDELMERT---------------- 203 (272)
T ss_pred echHHhcCCCCCCchhhhhHhhhCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHH----------------
Confidence 99999999999999999999999998 9999999999999 99999999999999987765322
Q ss_pred HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Q 012534 301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFS 379 (461)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~-sp~al~~tk~~l~ 379 (461)
.+||+ +|+++ +|.++..+|++++
T Consensus 204 ----------------------------------------------------~~~a~----~i~~~~~p~a~~~~K~~l~ 227 (272)
T PRK06210 204 ----------------------------------------------------LAYAE----DLARNVSPASMAVIKRQLY 227 (272)
T ss_pred ----------------------------------------------------HHHHH----HHHhcCCHHHHHHHHHHHH
Confidence 24554 68875 9999999999999
Q ss_pred HHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 380 KVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
... ..++.+.++.|...+...+.++|++||+++|+ +| |+|.|..
T Consensus 228 ~~~---------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~~ 271 (272)
T PRK06210 228 EDA---------FQTLAEATARANREMHESLQRPDFIEGVASFL-EK-RPPRFPG 271 (272)
T ss_pred hcc---------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCC
Confidence 765 56899999999999999999999999999999 67 8999974
No 46
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-51 Score=402.23 Aligned_cols=266 Identities=22% Similarity=0.292 Sum_probs=220.9
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.++.+.++..+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus 7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~~~ 85 (276)
T PRK05864 7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVEGL 85 (276)
T ss_pred CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhcccccccc
Confidence 3566777764689999999999999999999999999999999999999999999997 899999999986421100000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
. ........+..+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++|
T Consensus 86 ~--------------------~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~p 145 (276)
T PRK05864 86 T--------------------RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAA 145 (276)
T ss_pred c--------------------chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCc
Confidence 0 00001112333455677889999999999999999999999999999999999999999
Q ss_pred ccccCCCC-CchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 224 ENGIGLFP-DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 224 e~~lGl~P-~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
|+++|++| ++|++++|++++|.. ++++|++||++++ |+||+++||||++||++++.+.+
T Consensus 146 e~~~Gl~p~~~g~~~~l~~~vG~~-~A~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a------------------ 205 (276)
T PRK05864 146 GINNGLTASELGLSYLLPRAIGSS-RAFEIMLTGRDVD-AEEAERIGLVSRQVPDEQLLDTC------------------ 205 (276)
T ss_pred ccccCCCCCCcchheehHhhhCHH-HHHHHHHcCCccC-HHHHHHcCCcceeeCHHHHHHHH------------------
Confidence 99999997 789999999999997 9999999999999 99999999999999987765422
Q ss_pred HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
.+||+ +|+..||.+++.+|++++...
T Consensus 206 --------------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~ 231 (276)
T PRK05864 206 --------------------------------------------------YAIAA----RMAGFSRPGIELTKRTLWSGL 231 (276)
T ss_pred --------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhc
Confidence 24555 799999999999999998754
Q ss_pred hhcCCCccccC-CHHHHHHHHHHHH-HhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 383 SAHGKTDNELS-KLSGVMKYEYRVA-LRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 383 ~~~~~~~~~~~-~l~~~l~~E~~~~-~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
.. ++.+.+..|.... ...+.++|++||+++|+ +| |+|+|++.
T Consensus 232 ---------~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~-~k-r~p~~~~~ 275 (276)
T PRK05864 232 ---------DAASLEAHMQAEGLGQLFVRLLTANFEEAVAARA-EK-RPPVFTDD 275 (276)
T ss_pred ---------ccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHh-cc-CCCCCCCC
Confidence 32 6888888887543 23578999999999999 67 89999864
No 47
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=5.7e-51 Score=402.20 Aligned_cols=258 Identities=19% Similarity=0.235 Sum_probs=219.2
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... ..
T Consensus 11 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~- 87 (273)
T PRK07396 11 EYEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGY-VD- 87 (273)
T ss_pred CCcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccc-cc-
Confidence 356688876 789999999999999999999999999999999999999999999998569999999998642100 00
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
. .. . ..+ ....++..+.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 88 ~-------------------~~---~-~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~p 143 (273)
T PRK07396 88 D-------------------DG---V-PRL-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQT 143 (273)
T ss_pred h-------------------hh---h-hhh-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecc
Confidence 0 00 0 011 1234566789999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|++++|.. ++++|++||+.|+ |+||+++||||+|||++++.+.+
T Consensus 144 e~~~Gl~p~~~~~~~l~~~vG~~-~a~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a------------------- 202 (273)
T PRK07396 144 GPKVGSFDGGYGASYLARIVGQK-KAREIWFLCRQYD-AQEALDMGLVNTVVPLADLEKET------------------- 202 (273)
T ss_pred cccccccCCchHHHHHHHHhhHH-HHHHHHHhCCCcC-HHHHHHcCCcCeecCHHHHHHHH-------------------
Confidence 99999999999999999999997 9999999999999 99999999999999987765422
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
.+||+ +|++++|.+++.+|++++...
T Consensus 203 -------------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~- 228 (273)
T PRK07396 203 -------------------------------------------------VRWCR----EMLQNSPMALRCLKAALNADC- 228 (273)
T ss_pred -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh-
Confidence 24444 799999999999999998754
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
. .+....+.|...+...+.++|++||+.+|+ +| |+|+|+.
T Consensus 229 --------~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~~~~ 268 (273)
T PRK07396 229 --------D-GQAGLQELAGNATMLFYMTEEAQEGRNAFN-EK-RQPDFSK 268 (273)
T ss_pred --------c-cHHHHHHHHHHHHHHHhcChhHHHHHHHHh-CC-CCCCCCC
Confidence 2 355556678888888999999999999999 67 8999986
No 48
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-51 Score=397.75 Aligned_cols=254 Identities=24% Similarity=0.392 Sum_probs=220.3
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
|+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~--- 76 (257)
T PRK06495 3 MSQLKLEV-SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGP--- 76 (257)
T ss_pred cceEEEEe-eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCc---
Confidence 55688876 7899999999998 5999999999999999999999999999999998 8999999999875311000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.....+......++.++.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus 77 ----------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 134 (257)
T PRK06495 77 ----------------------GDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPE 134 (257)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChh
Confidence 0011123334567778999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++ |++++|++++|.. ++++|+++|+.++ |+||+++||||++||++++.+.+.
T Consensus 135 ~~~Gl~---~~~~~l~~~~g~~-~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~~~~~a~------------------- 190 (257)
T PRK06495 135 IDVGLA---GGGKHAMRLFGHS-LTRRMMLTGYRVP-AAELYRRGVIEACLPPEELMPEAM------------------- 190 (257)
T ss_pred hccCcc---ccHHHHHHHhCHH-HHHHHHHcCCeeC-HHHHHHcCCcceecCHHHHHHHHH-------------------
Confidence 999996 5577899999997 9999999999999 999999999999999877654222
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
+|++ +|+++||.+++.+|++++...
T Consensus 191 -------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~-- 215 (257)
T PRK06495 191 -------------------------------------------------EIAR----EIASKSPLATRLAKDALNTIE-- 215 (257)
T ss_pred -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh--
Confidence 4444 799999999999999999865
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++.++++.|...+...+.++|++||+++|+ +| |+|+|+.
T Consensus 216 -------~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~-~k-r~p~~~~ 256 (257)
T PRK06495 216 -------NMSLRDGYRYEQDITAKLAKTEDAKEAQRAFL-EK-RPPVFKG 256 (257)
T ss_pred -------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHh-cc-CCCCCCC
Confidence 56899999999999999999999999999999 67 8999975
No 49
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-51 Score=399.48 Aligned_cols=254 Identities=26% Similarity=0.374 Sum_probs=225.0
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (461)
Q Consensus 66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (461)
..|.+++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~---- 78 (259)
T PRK06688 5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP---- 78 (259)
T ss_pred CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch----
Confidence 3477776 789999999999999999999999999999999999999999999998 8999999999875411000
Q ss_pred CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534 146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 225 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~ 225 (461)
..+....+.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus 79 ------------------------~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~ 134 (259)
T PRK06688 79 ------------------------PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA 134 (259)
T ss_pred ------------------------HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchh
Confidence 11344456677889999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+
T Consensus 135 ~~G~~p~~g~~~~l~~~~G~~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a--------------------- 191 (259)
T PRK06688 135 KLGLCPDAGGSALLPRLIGRA-RAAEMLLLGEPLS-AEEALRIGLVNRVVPAAELDAEA--------------------- 191 (259)
T ss_pred hcCCCCCcchhhHHHHHhhHH-HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHH---------------------
Confidence 999999999999999999997 9999999999999 99999999999999977665322
Q ss_pred hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
.++|+ +|++.||.+++.+|++++...
T Consensus 192 -----------------------------------------------~~~a~----~i~~~~~~a~~~~K~~l~~~~--- 217 (259)
T PRK06688 192 -----------------------------------------------DAQAA----KLAAGPASALRYTKRAINAAT--- 217 (259)
T ss_pred -----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh---
Confidence 14444 788999999999999999875
Q ss_pred CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++++++..|.+.+..++.++|+++|+++|+ +| ++|+|++
T Consensus 218 ------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~-~~-~~p~~~~ 258 (259)
T PRK06688 218 ------LTELEEALAREAAGFGRLLRTPDFREGATAFI-EK-RKPDFTG 258 (259)
T ss_pred ------hCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCCC
Confidence 45899999999999999999999999999999 67 7999975
No 50
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-50 Score=404.59 Aligned_cols=275 Identities=23% Similarity=0.322 Sum_probs=219.2
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (296)
T PRK08260 3 YETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAPR 80 (296)
T ss_pred cceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhcccccccc
Confidence 45678876 789999999999999999999999999999999999999999999998 8999999999875311000000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.... ........ .....+......++..|..+||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus 81 ~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe 150 (296)
T PRK08260 81 TPVE--------ADEEDRAD--PSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVF 150 (296)
T ss_pred cccc--------cccccccc--hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecch
Confidence 0000 00000000 0001122223456778999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 151 ~~~Gl~p~~g~~~~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~------------------- 209 (296)
T PRK08260 151 GRRGIVPEAASSWFLPRLVGLQ-TALEWVYSGRVFD-AQEALDGGLVRSVHPPDELLPAAR------------------- 209 (296)
T ss_pred hhcCcCCCcchhhhHHHhhCHH-HHHHHHHcCCccC-HHHHHHCCCceeecCHHHHHHHHH-------------------
Confidence 9999999999999999999998 9999999999999 999999999999999877653221
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVAS 383 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~-sp~al~~tk~~l~~~~~ 383 (461)
++|+ +|+++ +|.+++.+|++++....
T Consensus 210 -------------------------------------------------~~a~----~i~~~~~~~a~~~~K~~l~~~~~ 236 (296)
T PRK08260 210 -------------------------------------------------ALAR----EIADNTSPVSVALTRQMMWRMAG 236 (296)
T ss_pred -------------------------------------------------HHHH----HHHhcCChHHHHHHHHHHHhccc
Confidence 4444 78885 99999999999987530
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
....+. ....|...+..++.++|++||+++|+ +| |+|.|+++
T Consensus 237 -------~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~f~~~ 278 (296)
T PRK08260 237 -------ADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFL-EK-RPAVFPGK 278 (296)
T ss_pred -------CCCcHH-HHHHHHHHHHHHccChhHHHHHHHHh-cC-CCCCCCCC
Confidence 012333 34568888888899999999999999 67 89999986
No 51
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-50 Score=395.28 Aligned_cols=260 Identities=22% Similarity=0.299 Sum_probs=220.8
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
++.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... .....
T Consensus 2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~-~~~~~ 78 (262)
T PRK07509 2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSP-GNAVK 78 (262)
T ss_pred CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhccc-chhhh
Confidence 35677887 789999999999999999999999999999999999999999999998 8999999999875321 00000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
...............++..+.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus 79 -------------------~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 139 (262)
T PRK07509 79 -------------------LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIME 139 (262)
T ss_pred -------------------hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecch
Confidence 0000011111223345667889999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++|++ +.+ ++
T Consensus 140 ~~~Gl~p~~g~~~~l~~~~g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~--~~~--~a------------------ 195 (262)
T PRK07509 140 AKWGLVPDMAGTVSLRGLVRKD-VARELTYTARVFS-AEEALELGLVTHVSDD--PLA--AA------------------ 195 (262)
T ss_pred hccCCCCCchHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHcCChhhhhch--HHH--HH------------------
Confidence 9999999999999999999998 9999999999999 9999999999999953 321 11
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
.+||+ +|++++|.+++.+|++++...
T Consensus 196 ------------------------------------------------~~~a~----~l~~~~~~~~~~~K~~l~~~~-- 221 (262)
T PRK07509 196 ------------------------------------------------LALAR----EIAQRSPDAIAAAKRLINRSW-- 221 (262)
T ss_pred ------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh--
Confidence 24555 799999999999999999876
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 433 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~ 433 (461)
..++.+++..|.+.+..++.++|++||+++|+ +| |+|.|+
T Consensus 222 -------~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek-r~p~~~ 261 (262)
T PRK07509 222 -------TASVRALLARESVEQIRLLLGKNQKIAVKAQM-KK-RAPKFL 261 (262)
T ss_pred -------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence 46789999999999999999999999999999 67 799996
No 52
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-50 Score=391.56 Aligned_cols=247 Identities=27% Similarity=0.429 Sum_probs=215.6
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (461)
|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~-------- 71 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDFA-------- 71 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhhH--------
Confidence 45665 789999999999999999999999999999999999999999999998 89999999998753110
Q ss_pred CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534 148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227 (461)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l 227 (461)
..+...++.++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus 72 ----------------------~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~ 129 (248)
T PRK06072 72 ----------------------IDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRL 129 (248)
T ss_pred ----------------------HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhc
Confidence 0122334556778999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534 228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307 (461)
Q Consensus 228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~ 307 (461)
|++|++|+++++++++| . +++++++||+.|+ |+||+++||||.+ +++.+ ++
T Consensus 130 Gl~p~~g~~~~l~~~~g-~-~a~~lll~g~~~~-a~eA~~~Glv~~~---~~~~~--~a--------------------- 180 (248)
T PRK06072 130 GLASDTGVAYFLLKLTG-Q-RFYEILVLGGEFT-AEEAERWGLLKIS---EDPLS--DA--------------------- 180 (248)
T ss_pred CcCCCchHHHHHHHHhh-H-HHHHHHHhCCccC-HHHHHHCCCcccc---chHHH--HH---------------------
Confidence 99999999999999999 4 8999999999999 9999999999953 23322 11
Q ss_pred cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534 308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 387 (461)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~ 387 (461)
.++|+ +|++.||.+++.+|++++...
T Consensus 181 ---------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~----- 206 (248)
T PRK06072 181 ---------------------------------------------EEMAN----RISNGPFQSYIAAKRMINLVL----- 206 (248)
T ss_pred ---------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh-----
Confidence 14444 899999999999999999865
Q ss_pred CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
..++++.++.|.+.+..++.++|++||+++|+ +| |+|+|+++
T Consensus 207 ----~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~~ 248 (248)
T PRK06072 207 ----YNDLEEFLEYESAIQGYLGKTEDFKEGISSFK-EK-REPKFKGI 248 (248)
T ss_pred ----hcCHHHHHHHHHHHHHHHhCChhHHHHHHHHh-cC-CCCCCCCC
Confidence 45799999999999999999999999999999 67 89999863
No 53
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-50 Score=393.23 Aligned_cols=252 Identities=24% Similarity=0.355 Sum_probs=219.7
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCC
Q 012534 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (461)
Q Consensus 66 ~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~ 145 (461)
+.+.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus 2 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~--- 76 (255)
T PRK07260 2 EHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDD--- 76 (255)
T ss_pred CceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccc---
Confidence 4577776 789999999999999999999999999999999999999999999998 89999999999764211100
Q ss_pred CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccc
Q 012534 146 LVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 225 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~ 225 (461)
......+....+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||+
T Consensus 77 --------------------~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~ 136 (255)
T PRK07260 77 --------------------VQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV 136 (255)
T ss_pred --------------------hhhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHh
Confidence 001112333445677789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
++|++|++|++++|++++|.. ++++|++||++++ |+||+++||||++||++++.+.+.
T Consensus 137 ~~Gl~p~~g~~~~l~~~vg~~-~a~~l~l~g~~~s-a~eA~~~Glv~~vv~~~~l~~~a~-------------------- 194 (255)
T PRK07260 137 GVGLAPDAGGLFLLTRAIGLN-RATHLAMTGEALT-AEKALEYGFVYRVAESEKLEKTCE-------------------- 194 (255)
T ss_pred hcCCCCCCchhhhhHHhhCHH-HHHHHHHhCCccC-HHHHHHcCCcceecCHhHHHHHHH--------------------
Confidence 999999999999999999998 9999999999999 999999999999999877653222
Q ss_pred hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
++++ +|++.+|.+++.+|+.++...
T Consensus 195 ------------------------------------------------~~a~----~la~~~~~a~~~~K~~~~~~~--- 219 (255)
T PRK07260 195 ------------------------------------------------QLLK----KLRRGSSNSYAAIKSLVWESF--- 219 (255)
T ss_pred ------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHHh---
Confidence 3343 799999999999999999875
Q ss_pred CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534 386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 426 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K 426 (461)
..++++.+..|...+..++.++|++||+++|+ +|
T Consensus 220 ------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k 253 (255)
T PRK07260 220 ------FKGWEDYAKLELALQESLAFKEDFKEGVRAFS-ER 253 (255)
T ss_pred ------hcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hc
Confidence 46799999999999999999999999999999 56
No 54
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-50 Score=393.67 Aligned_cols=247 Identities=18% Similarity=0.192 Sum_probs=211.3
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (461)
|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... .. .
T Consensus 5 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~-~~--~--- 76 (254)
T PRK08259 5 VRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGR-GN--R--- 76 (254)
T ss_pred EEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhccc-ch--h---
Confidence 67776 789999999999999999999999999999999999999999999997 8999999999875311 00 0
Q ss_pred CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534 148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227 (461)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l 227 (461)
... .... .+...+.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus 77 ------------------~~~--~~~~---~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~ 133 (254)
T PRK08259 77 ------------------LHP--SGDG---PMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRW 133 (254)
T ss_pred ------------------hhh--hhcc---hhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCccccc
Confidence 000 0000 11122347999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534 228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307 (461)
Q Consensus 228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~ 307 (461)
|++|++|++++|++++|.. ++++|+++|+.|+ |+||+++||||++||++++.+.+.
T Consensus 134 Gl~p~~g~~~~l~~~iG~~-~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------- 189 (254)
T PRK08259 134 GVPLIDGGTVRLPRLIGHS-RAMDLILTGRPVD-ADEALAIGLANRVVPKGQARAAAE---------------------- 189 (254)
T ss_pred CCCCCccHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCCEeeChhHHHHHHH----------------------
Confidence 9999999999999999997 9999999999999 999999999999999887764222
Q ss_pred cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534 308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 387 (461)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~ 387 (461)
+||+ +|++.||.+++.+|++++...
T Consensus 190 ----------------------------------------------~~a~----~la~~~~~a~~~~K~~~~~~~----- 214 (254)
T PRK08259 190 ----------------------------------------------ELAA----ELAAFPQTCLRADRLSALEQW----- 214 (254)
T ss_pred ----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh-----
Confidence 4444 799999999999999999765
Q ss_pred CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCC
Q 012534 388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNP 430 (461)
Q Consensus 388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P 430 (461)
..++.+.++.|...+...+. +|++||+++|+ +|+++|
T Consensus 215 ----~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~-~~~~~~ 251 (254)
T PRK08259 215 ----GLPEEAALANEFAHGLAVLA-AEALEGAARFA-AGAGRH 251 (254)
T ss_pred ----cCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHH-hhhccc
Confidence 46799999999988777777 99999999999 555666
No 55
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=4.8e-50 Score=390.89 Aligned_cols=246 Identities=19% Similarity=0.267 Sum_probs=211.1
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (461)
|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 3 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~--------- 70 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPDQ--------- 70 (251)
T ss_pred EEEEe-eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCchh---------
Confidence 55666 6889999999997 5999999999999999999999999999999998 7999999999752100
Q ss_pred CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534 148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227 (461)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l 227 (461)
...++.....++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus 71 ---------------------~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~ 129 (251)
T TIGR03189 71 ---------------------CAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVL 129 (251)
T ss_pred ---------------------HHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhc
Confidence 00123344567788999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534 228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307 (461)
Q Consensus 228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~ 307 (461)
|++|+ |++++|++++|.. ++++|+|||+.++ |+||+++|||++++|+.+ . .++
T Consensus 130 Gl~p~-~~~~~l~~~vg~~-~a~~l~ltg~~~~-a~eA~~~Glv~~v~~~~~--~--~a~-------------------- 182 (251)
T TIGR03189 130 GVFAP-AASCLLPERMGRV-AAEDLLYSGRSID-GAEGARIGLANAVAEDPE--N--AAL-------------------- 182 (251)
T ss_pred CCCCC-chHHHHHHHhCHH-HHHHHHHcCCCCC-HHHHHHCCCcceecCcHH--H--HHH--------------------
Confidence 99987 4678999999998 9999999999999 999999999999997532 1 111
Q ss_pred cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHH-HHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQW-ADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~-A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
++ ++ +|+++||.+++.+|++++...
T Consensus 183 ----------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~---- 208 (251)
T TIGR03189 183 ----------------------------------------------AWFDE----HPAKLSASSLRFAVRAARLGM---- 208 (251)
T ss_pred ----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh----
Confidence 22 33 799999999999999999765
Q ss_pred CCccccCCHHHHH-HHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 387 KTDNELSKLSGVM-KYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 387 ~~~~~~~~l~~~l-~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..++++.+ ..|......++.++|++||+++|+ +| |+|.|++
T Consensus 209 -----~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~~~~ 250 (251)
T TIGR03189 209 -----NERVKAKIAEVEALYLEELMATHDAVEGLNAFL-EK-RPALWED 250 (251)
T ss_pred -----cccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH-hc-CCCCCCC
Confidence 45777766 477788888999999999999999 67 8999975
No 56
>PLN02921 naphthoate synthase
Probab=100.00 E-value=5.8e-50 Score=402.78 Aligned_cols=259 Identities=19% Similarity=0.222 Sum_probs=217.9
Q ss_pred CccceEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534 64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (461)
Q Consensus 64 ~~~~i~~~~~-~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~ 142 (461)
.++.|.+++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.... .
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~---~ 139 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG---Y 139 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc---c
Confidence 5677888863 58999999999999999999999999999999999999999999999867999999999764210 0
Q ss_pred CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
.. ..... .+ ....++..|.++||||||+|||+|+|||++|+++||||||+++++|++
T Consensus 140 ~~---------------------~~~~~-~~-~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~ 196 (327)
T PLN02921 140 VG---------------------PDDAG-RL-NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQ 196 (327)
T ss_pred cc---------------------hhHHH-HH-HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeC
Confidence 00 00000 11 123456788999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
||+++|++|++|++++|++++|.. ++++|+++|+.++ |+||+++||||++||.+++.+.+
T Consensus 197 pe~~~Gl~p~~gg~~~L~rliG~~-~A~ellltG~~~~-A~eA~~~GLV~~vv~~~~l~~~a------------------ 256 (327)
T PLN02921 197 TGPKVGSFDAGYGSSIMARLVGQK-KAREMWFLARFYT-ASEALKMGLVNTVVPLDELEGET------------------ 256 (327)
T ss_pred cccccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHCCCceEEeCHHHHHHHH------------------
Confidence 999999999999999999999998 9999999999999 99999999999999987776422
Q ss_pred HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
.+||+ +|+++||.+++.+|++++...
T Consensus 257 --------------------------------------------------~~~a~----~la~~~p~al~~~K~~l~~~~ 282 (327)
T PLN02921 257 --------------------------------------------------VKWCR----EILRNSPTAIRVLKSALNAAD 282 (327)
T ss_pred --------------------------------------------------HHHHH----HHHccCHHHHHHHHHHHHHhh
Confidence 24555 799999999999999998764
Q ss_pred hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
. ........|...+..++.++|++||+++|+ +| |+|+|+.
T Consensus 283 ---------~-~~~~~~~~~~~~~~~~~~s~d~~egi~Af~-ek-r~p~f~~ 322 (327)
T PLN02921 283 ---------D-GHAGLQELGGNATLLFYGSEEGNEGRTAYL-EG-RAPDFSK 322 (327)
T ss_pred ---------c-chhHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCC
Confidence 2 233333444577777889999999999999 67 8999985
No 57
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=8.2e-50 Score=390.82 Aligned_cols=253 Identities=31% Similarity=0.463 Sum_probs=221.2
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
+..+.++. .++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+||+++.. . ...
T Consensus 4 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~-~-~~~-- 77 (257)
T COG1024 4 YETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLS-P-EDG-- 77 (257)
T ss_pred CCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhc-c-cch--
Confidence 45567776 566999999999999999999999999999999999999999999998 99999999999875 1 000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.....++...+.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||
T Consensus 78 ----------------------~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe 135 (257)
T COG1024 78 ----------------------NAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPE 135 (257)
T ss_pred ----------------------hHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcc
Confidence 0011366666788999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHhcccCCChHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
+++|++|++|++++|+|++|.. ++++|++||+.++ |+||+++|||+++|+. +++.+.+.
T Consensus 136 ~~iGl~Pg~g~~~~l~r~~G~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~------------------ 195 (257)
T COG1024 136 VNLGLLPGDGGTQRLPRLLGRG-RAKELLLTGEPIS-AAEALELGLVDEVVPDAEELLERAL------------------ 195 (257)
T ss_pred cccccCCCCcHHHHHHHhcCHH-HHHHHHHcCCcCC-HHHHHHcCCcCeeeCCHHHHHHHHH------------------
Confidence 9999999889999999999998 9999999999999 9999999999999985 45553222
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
++++ +++. +|.++..+|+.++...
T Consensus 196 --------------------------------------------------~~a~----~~a~-~~~a~~~~k~~~~~~~- 219 (257)
T COG1024 196 --------------------------------------------------ELAR----RLAA-PPLALAATKRLVRAAL- 219 (257)
T ss_pred --------------------------------------------------HHHH----HHcc-CHHHHHHHHHHHHHhh-
Confidence 4444 5555 9999999999999876
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 432 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w 432 (461)
...+.+.+..|...+...+.++|++||+++|+ + |+|.|
T Consensus 220 --------~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~-~--r~p~~ 257 (257)
T COG1024 220 --------EADLAEALEAEALAFARLFSSEDFREGVRAFL-E--RKPVF 257 (257)
T ss_pred --------hccHHHHHHHHHHHHHHHhcChhHHHHHHHHH-c--cCCCC
Confidence 33499999999999998889999999999999 4 78988
No 58
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-50 Score=388.11 Aligned_cols=241 Identities=20% Similarity=0.316 Sum_probs=212.7
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (461)
|.++. +++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||.| ++||+|+|+++... .
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~---~------- 68 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY---A------- 68 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh---H-------
Confidence 45666 689999999999999999999999999999999965 89999999998 89999999985211 0
Q ss_pred CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534 148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227 (461)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l 227 (461)
..+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 69 ----------------------~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~ 126 (243)
T PRK07854 69 ----------------------DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKY 126 (243)
T ss_pred ----------------------HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEecccccc
Confidence 0133334567778999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534 228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307 (461)
Q Consensus 228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~ 307 (461)
|++|++|++++|++++|.. ++++|++||+.++ |+||+++|||++|++ +. ++
T Consensus 127 G~~p~~g~~~~l~~~~G~~-~a~~l~ltg~~~~-a~eA~~~Glv~~v~~---~~---~a--------------------- 177 (243)
T PRK07854 127 GIALDNWTIRRLSSLVGGG-RARAMLLGAEKLT-AEQALATGMANRIGT---LA---DA--------------------- 177 (243)
T ss_pred ccCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHCCCcccccC---HH---HH---------------------
Confidence 9999999999999999997 9999999999999 999999999999974 21 11
Q ss_pred cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534 308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 387 (461)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~ 387 (461)
.+||+ +|+++||.+++.+|++++..
T Consensus 178 ---------------------------------------------~~~a~----~l~~~~~~a~~~~K~~l~~~------ 202 (243)
T PRK07854 178 ---------------------------------------------QAWAA----EIAGLAPLALQHAKRVLNDD------ 202 (243)
T ss_pred ---------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHcc------
Confidence 25665 79999999999999999863
Q ss_pred CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..+++.++.|...+..++.++|+.||+++|+ +| |+|.|++
T Consensus 203 -----~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 242 (243)
T PRK07854 203 -----GAIEEAWPAHKELFDKAWASQDAIEAQVARI-EK-RPPKFQG 242 (243)
T ss_pred -----CCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-CC-CCCCCCC
Confidence 3589999999999999999999999999999 67 8999975
No 59
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-50 Score=389.80 Aligned_cols=243 Identities=20% Similarity=0.266 Sum_probs=212.5
Q ss_pred ceEEEEecC---cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 67 FVKGNVHPN---GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 67 ~i~~~~~~~---~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.|.++. ++ +|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++.......
T Consensus 4 ~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~-- 79 (251)
T PRK06023 4 HILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMGG-- 79 (251)
T ss_pred eEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhccccc--
Confidence 477776 44 5999999999999999999999999999999999999999999997 8999999999875311000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
..+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 80 --------------------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~p 133 (251)
T PRK06023 80 --------------------------TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTP 133 (251)
T ss_pred --------------------------hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCc
Confidence 002223345677899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|++++|.. +++++++||+.++ |+||+++|||+++||.+++.+.+.
T Consensus 134 e~~~Gl~p~~g~~~~l~~~~g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------ 193 (251)
T PRK06023 134 FVDLALVPEAGSSLLAPRLMGHQ-RAFALLALGEGFS-AEAAQEAGLIWKIVDEEAVEAETL------------------ 193 (251)
T ss_pred ccccCCCCCchHHHHHHHHHhHH-HHHHHHHhCCCCC-HHHHHHcCCcceeeCHHHHHHHHH------------------
Confidence 99999999999999999999997 9999999999999 999999999999999877654221
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
++|+ +|++.||.+++.+|++++...
T Consensus 194 --------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~- 218 (251)
T PRK06023 194 --------------------------------------------------KAAE----ELAAKPPQALQIARDLMRGPR- 218 (251)
T ss_pred --------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhch-
Confidence 4444 799999999999999998643
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL 423 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl 423 (461)
..+.+.++.|.+.+...+.++|++||+++|+
T Consensus 219 ---------~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~ 249 (251)
T PRK06023 219 ---------EDILARIDEEAKHFAARLKSAEARAAFEAFM 249 (251)
T ss_pred ---------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 3588899999998889999999999999999
No 60
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-50 Score=389.82 Aligned_cols=244 Identities=22% Similarity=0.324 Sum_probs=214.3
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~----- 76 (249)
T PRK05870 4 PVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRP----- 76 (249)
T ss_pred cEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccc-----
Confidence 367776 789999999999999999999999999999999999999999999998 8999999999875421000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
....+...+..+..+.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 77 ----------------------~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~ 134 (249)
T PRK05870 77 ----------------------AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQK 134 (249)
T ss_pred ----------------------hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccc
Confidence 0113334455667899999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++| +++.+.+
T Consensus 135 ~G~~p~~g~~~~l~~~~G~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv--~~l~~~a---------------------- 188 (249)
T PRK05870 135 LGLHPGGGATWMLQRAVGPQ-VARAALLFGMRFD-AEAAVRHGLALMVA--DDPVAAA---------------------- 188 (249)
T ss_pred cCcCCCCcceeeHHhhhCHH-HHHHHHHhCCccC-HHHHHHcCCHHHHH--hhHHHHH----------------------
Confidence 99999999999999999998 9999999999999 99999999999999 4554321
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
.+||+ +|+++||.+++.+|++++...
T Consensus 189 ----------------------------------------------~~~a~----~la~~~~~a~~~~K~~~~~~~---- 214 (249)
T PRK05870 189 ----------------------------------------------LELAA----GPAAAPRELVLATKASMRATA---- 214 (249)
T ss_pred ----------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHhcc----
Confidence 14444 799999999999999999765
Q ss_pred CCcccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534 387 KTDNEL-SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV 424 (461)
Q Consensus 387 ~~~~~~-~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~ 424 (461)
. .+++++++.|...+...+.++|++||+++|++
T Consensus 215 -----~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~ 248 (249)
T PRK05870 215 -----SLAQHAAAVEFELGPQAASVQSPEFAARLAAAQR 248 (249)
T ss_pred -----ccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhc
Confidence 4 57999999999999999999999999999993
No 61
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-50 Score=398.71 Aligned_cols=271 Identities=18% Similarity=0.168 Sum_probs=215.5
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHH-HhhhcC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA-EIQKDR 142 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~-~~~~~~ 142 (461)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+||++... ......
T Consensus 3 ~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 3 DFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence 356688876 789999999999999999999999999999999999999999999998 89999999986321 000000
Q ss_pred CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
...... ..................+..|.++||||||+|||+|+|||++|+++||+||++++++|++
T Consensus 81 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~ 147 (298)
T PRK12478 81 TDGRWD-------------PGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGT 147 (298)
T ss_pred cccccC-------------chhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEec
Confidence 000000 0000000000000112345568899999999999999999999999999999999999999
Q ss_pred ccccc-CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534 223 PENGI-GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV 301 (461)
Q Consensus 223 pe~~l-Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~ 301 (461)
||+++ |++| |+++. +.+|.. ++++|++||+.|+ |+||+++||||++||++++.+.+
T Consensus 148 pe~~l~G~~~--~~~~~--~~vG~~-~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a----------------- 204 (298)
T PRK12478 148 PYSRMWGAYL--TGMWL--YRLSLA-KVKWHSLTGRPLT-GVQAAEAELINEAVPFERLEARV----------------- 204 (298)
T ss_pred cccccccCCc--hhHHH--HHhhHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHH-----------------
Confidence 99997 8875 33332 458997 9999999999999 99999999999999988876422
Q ss_pred HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534 302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV 381 (461)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~ 381 (461)
.+||+ +|+.+||.+++.+|++++..
T Consensus 205 ---------------------------------------------------~~~a~----~la~~~p~a~~~~K~~l~~~ 229 (298)
T PRK12478 205 ---------------------------------------------------AEVAT----ELARIPLSQLQAQKLIVNQA 229 (298)
T ss_pred ---------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHH
Confidence 24555 79999999999999999986
Q ss_pred hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHH--------HHHHhhhcCCCCCCCCCCCCc
Q 012534 382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFA--------EGVRAVLVDKDQNPKWNPASL 437 (461)
Q Consensus 382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~--------egv~afl~~K~r~P~w~~~~~ 437 (461)
. ...++.+.+..|...+..++.++|++ ||++||+ +| |+|+|+.-+.
T Consensus 230 ~--------~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~~ 283 (298)
T PRK12478 230 Y--------ENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAV-ER-RDGPFGDYSQ 283 (298)
T ss_pred H--------HhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH-Hh-cCCcccccCc
Confidence 5 12469999999999999999999997 5999999 77 8999998665
No 62
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-49 Score=386.96 Aligned_cols=245 Identities=19% Similarity=0.264 Sum_probs=210.5
Q ss_pred EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCC
Q 012534 70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK 149 (461)
Q Consensus 70 ~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 149 (461)
+..++++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus 5 ~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~--------- 73 (249)
T PRK07938 5 STTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPGF--------- 73 (249)
T ss_pred ecccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccch---------
Confidence 334478999999999985 999999999999999999999999999999998 899999999986431000
Q ss_pred CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534 150 VPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL 229 (461)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl 229 (461)
............++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+
T Consensus 74 -----------------~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~ 136 (249)
T PRK07938 74 -----------------TALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGA 136 (249)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecC
Confidence 001112233345677899999999999999999999999999999999999999999999998
Q ss_pred CCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcC
Q 012534 230 FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS 309 (461)
Q Consensus 230 ~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~ 309 (461)
+ |++++|++++|.. ++++|++||+.|+ |+||+++||||++||++++.+.+.
T Consensus 137 ~---g~~~~l~~~vg~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------ 187 (249)
T PRK07938 137 L---GAATHLQRLVPQH-LMRALFFTAATIT-AAELHHFGSVEEVVPRDQLDEAAL------------------------ 187 (249)
T ss_pred c---hhHHHHHHhcCHH-HHHHHHHhCCcCC-HHHHHHCCCccEEeCHHHHHHHHH------------------------
Confidence 5 5677899999997 9999999999999 999999999999999877654222
Q ss_pred CCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCc
Q 012534 310 DPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTD 389 (461)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~ 389 (461)
+||+ +|+.+||.+++.+|++++...
T Consensus 188 --------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~------- 212 (249)
T PRK07938 188 --------------------------------------------EVAR----KIAAKDTRVIRAAKEALNGID------- 212 (249)
T ss_pred --------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhc-------
Confidence 4444 799999999999999999765
Q ss_pred cccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCC
Q 012534 390 NELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNP 430 (461)
Q Consensus 390 ~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P 430 (461)
..++.+.++.|.......+.++|++||+++|+ +| |+|
T Consensus 213 --~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p 249 (249)
T PRK07938 213 --PQDVERSYRWEQGFTFELNLAGVSDEHRDAFV-EK-RKA 249 (249)
T ss_pred --cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHH-hc-CCC
Confidence 46789999999999999999999999999999 67 666
No 63
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-49 Score=386.33 Aligned_cols=255 Identities=23% Similarity=0.339 Sum_probs=219.2
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
+..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 5 ~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~-~-~~ 80 (260)
T PRK07827 5 DTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGG-D-PY 80 (260)
T ss_pred CcceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhccc-C-ch
Confidence 34577776 789999999999999999999999999999999999999999999998 89999999998753100 0 00
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.....++..+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||
T Consensus 81 ----------------------~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe 138 (260)
T PRK07827 81 ----------------------DAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTE 138 (260)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcc
Confidence 0011234445667888999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|+++++++++| . ++++|+++|+.++ |+||+++|||+++++ ++.+
T Consensus 139 ~~~Gl~p~~g~~~~l~~l~~-~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~--~l~~---------------------- 191 (260)
T PRK07827 139 ARIGVAPAIISLTLLPRLSP-R-AAARYYLTGEKFG-AAEAARIGLVTAAAD--DVDA---------------------- 191 (260)
T ss_pred cccCCCCCcccchhHHhhhH-H-HHHHHHHhCCccC-HHHHHHcCCcccchH--HHHH----------------------
Confidence 99999999999999998854 5 8999999999999 999999999999974 3432
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
.+.+++++|++.||.+++.+|++++...
T Consensus 192 --------------------------------------------------~a~~~a~~la~~~~~a~~~~K~~l~~~~-- 219 (260)
T PRK07827 192 --------------------------------------------------AVAALLADLRRGSPQGLAESKALTTAAV-- 219 (260)
T ss_pred --------------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHhhh--
Confidence 2333334799999999999999999875
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 433 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~ 433 (461)
...+.+.++.|...+..++.++|+++|+++|+ +| |+|+|+
T Consensus 220 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~-~k-r~p~~~ 259 (260)
T PRK07827 220 -------LAGFDRDAEELTEESARLFVSDEAREGMTAFL-QK-RPPRWA 259 (260)
T ss_pred -------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence 56799999999999999999999999999999 67 789996
No 64
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=4.1e-49 Score=389.64 Aligned_cols=253 Identities=19% Similarity=0.237 Sum_probs=216.6
Q ss_pred CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCC-CccccCCChhhHHHHhhhc
Q 012534 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-RAFCAGMDIKGVVAEIQKD 141 (461)
Q Consensus 63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~-~~FcaG~Dl~~~~~~~~~~ 141 (461)
.+.+.|.++..+++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+ ++||+|+|++++.... .
T Consensus 8 ~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~--~ 84 (278)
T PLN03214 8 GATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPK--T 84 (278)
T ss_pred CCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccc--c
Confidence 345678887645899999999985 69999999999999999999999999999999873 6999999999874210 0
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534 142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 221 (461)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~ 221 (461)
. ......++.....++..|.++||||||+|||+|+|||++|+++|||||++++++|+
T Consensus 85 -~----------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~ 141 (278)
T PLN03214 85 -S----------------------AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMG 141 (278)
T ss_pred -c----------------------hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEec
Confidence 0 00011233333456778999999999999999999999999999999999999999
Q ss_pred ccccccCC-CCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534 222 MPENGIGL-FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI 300 (461)
Q Consensus 222 ~pe~~lGl-~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~ 300 (461)
+||+++|+ +|++|++++|++++|.. ++++|++||+.|+ |+||+++||||++||.+++.+.+.
T Consensus 142 ~pe~~lGl~~p~~~~~~~l~~~~G~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------- 204 (278)
T PLN03214 142 LNEVALGIPVPKFWARLFMGRVIDRK-VAESLLLRGRLVR-PAEAKQLGLIDEVVPAAALMEAAA--------------- 204 (278)
T ss_pred CcHHHhCCCCCChhHHHHHHHhcCHH-HHHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHH---------------
Confidence 99999999 59999999999999998 9999999999999 999999999999999877653221
Q ss_pred HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534 301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK 380 (461)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~ 380 (461)
+|++ +|++.+|.+++.+|++++.
T Consensus 205 -----------------------------------------------------~~a~----~l~~~~~~a~~~~K~~l~~ 227 (278)
T PLN03214 205 -----------------------------------------------------SAME----RALKLPSAARAATKALLRE 227 (278)
T ss_pred -----------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHh
Confidence 4444 7999999999999999998
Q ss_pred HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534 381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV 424 (461)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~ 424 (461)
.. ..+++++++.|.+.+...+.++|++||+++|++
T Consensus 228 ~~---------~~~l~~~~~~e~~~~~~~~~s~d~~egi~afle 262 (278)
T PLN03214 228 EF---------SAAWEAYYEEEAKGGWKMLSEPSIIKALGGVME 262 (278)
T ss_pred hH---------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 75 457899999999999999999999999999994
No 65
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.2e-48 Score=382.13 Aligned_cols=253 Identities=16% Similarity=0.199 Sum_probs=215.0
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.|+.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++. ++|+|||+|.| ++||+|+|++++........
T Consensus 2 ~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~--~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~- 76 (255)
T PRK07112 2 DYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEH--AATIVVLEGLP-EVFCFGADFSAIAEKPDAGR- 76 (255)
T ss_pred CCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhc--CceEEEEEcCC-CCcccCcCHHHHhhccccch-
Confidence 356688887 78999999999999999999999999999999983 59999999997 89999999998753111000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
.........+.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 77 ------------------------~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~p 132 (255)
T PRK07112 77 ------------------------ADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLS 132 (255)
T ss_pred ------------------------hhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCc
Confidence 00001222345777899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++| +.+|++++|.. ++++|+++|+.++ |+||+++||||++||+++.. +
T Consensus 133 e~~~Gl~p~~~-~~~l~~~vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~--~------------------- 188 (255)
T PRK07112 133 ELLFGLIPACV-LPFLIRRIGTQ-KAHYMTLMTQPVT-AQQAFSWGLVDAYGANSDTL--L------------------- 188 (255)
T ss_pred hhhhccCcchh-hHHHHHHhCHH-HHHHHHHhCCccc-HHHHHHcCCCceecCcHHHH--H-------------------
Confidence 99999999865 46799999998 9999999999999 99999999999999864421 0
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
.++++ +|++.+|.+++.+|++++...
T Consensus 189 -------------------------------------------------~~~a~----~l~~~~p~a~~~~K~~~~~~~- 214 (255)
T PRK07112 189 -------------------------------------------------RKHLL----RLRCLNKAAVARYKSYASTLD- 214 (255)
T ss_pred -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh-
Confidence 24444 799999999999999998643
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..+.+.++.|......++.++|++||+.+|+ +| |+|.|+.
T Consensus 215 ---------~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~~ 254 (255)
T PRK07112 215 ---------DTVAAARPAALAANIEMFADPENLRKIARYV-ET-GKFPWEA 254 (255)
T ss_pred ---------hhHHHHHHHHHHHHHHHHcChHHHHHHHHHH-cC-CCCCCCC
Confidence 3688999999999999999999999999999 67 8999974
No 66
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.6e-48 Score=389.83 Aligned_cols=269 Identities=20% Similarity=0.231 Sum_probs=217.2
Q ss_pred ccceEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCC------CccccCCChhhHHHH
Q 012534 65 EEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAGMDIKGVVAE 137 (461)
Q Consensus 65 ~~~i~~~~~-~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~------~~FcaG~Dl~~~~~~ 137 (461)
++.|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+ ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 445777752 5789999999999999999999999999999999999999999999973 699999999976321
Q ss_pred hhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc-C
Q 012534 138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-E 216 (461)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~-e 216 (461)
........ +. ......... ......+...+..+||||||+|||+|+|||++|+++|||||++ +
T Consensus 102 ~~~~~~~~----------~~----~~~~~~~~~--~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~ 165 (302)
T PRK08321 102 GYQYAEGD----------EA----DTVDPARAG--RLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASRE 165 (302)
T ss_pred cccccccc----------cc----cchhhhHHH--HHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecC
Confidence 00000000 00 000000000 0112245567889999999999999999999999999999999 6
Q ss_pred CceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCCh
Q 012534 217 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP 296 (461)
Q Consensus 217 ~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~ 296 (461)
+++|++||+++|++|++|++++|++++|.. ++++|++||+.++ |+||+++|||+++||++++.+.+.
T Consensus 166 ~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~----------- 232 (302)
T PRK08321 166 HARFKQTDADVGSFDGGYGSAYLARQVGQK-FAREIFFLGRTYS-AEEAHDMGAVNAVVPHAELETEAL----------- 232 (302)
T ss_pred CCEEECCccccccCCCchHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHCCCceEeeCHHHHHHHHH-----------
Confidence 999999999999999999999999999997 9999999999999 999999999999999877764222
Q ss_pred HHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHH
Q 012534 297 HQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQK 376 (461)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~ 376 (461)
++|+ +|++++|.+++.+|+
T Consensus 233 ---------------------------------------------------------~~a~----~la~~~~~a~~~~K~ 251 (302)
T PRK08321 233 ---------------------------------------------------------EWAR----EINGKSPTAMRMLKY 251 (302)
T ss_pred ---------------------------------------------------------HHHH----HHHhCCHHHHHHHHH
Confidence 4444 799999999999999
Q ss_pred HHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 377 YFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
+++... . .+.+....|.+.+..++.++|++||+.+|+ +| |+|.|+..
T Consensus 252 ~l~~~~---------~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~-ek-r~p~~~~~ 298 (302)
T PRK08321 252 AFNLTD---------D-GLVGQQLFAGEATRLAYMTDEAQEGRDAFL-EK-RDPDWSDF 298 (302)
T ss_pred HHHhhh---------c-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCCC
Confidence 998754 2 344445568888888999999999999999 67 89999763
No 67
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=5.2e-49 Score=382.40 Aligned_cols=244 Identities=32% Similarity=0.488 Sum_probs=221.3
Q ss_pred EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCC
Q 012534 70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK 149 (461)
Q Consensus 70 ~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 149 (461)
++. +|+|++|+||||++.|+||.+|+.+|.++|+.++.|+++|+||++|.| ++||+|+|++++.....
T Consensus 2 ~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~~~---------- 69 (245)
T PF00378_consen 2 YEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNSDE---------- 69 (245)
T ss_dssp EEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHHHH----------
T ss_pred EEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhcccc----------
Confidence 565 799999999999999999999999999999999999999999999986 89999999999987511
Q ss_pred CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534 150 VPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL 229 (461)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl 229 (461)
.....+....+.++.++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+
T Consensus 70 -----------------~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~ 132 (245)
T PF00378_consen 70 -----------------EEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGI 132 (245)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTS
T ss_pred -----------------ccccccchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCc
Confidence 123446777788999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcC
Q 012534 230 FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSS 309 (461)
Q Consensus 230 ~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~ 309 (461)
+|++|++++|++++|.. .++++++||+.++ |+||+++||||+++|++++.+
T Consensus 133 ~p~~g~~~~l~r~~g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~--------------------------- 183 (245)
T PF00378_consen 133 FPGAGGTFRLPRLIGPS-RARELLLTGEPIS-AEEALELGLVDEVVPDEELDE--------------------------- 183 (245)
T ss_dssp SSTSTHHHHHHHHHHHH-HHHHHHHHTCEEE-HHHHHHTTSSSEEESGGGHHH---------------------------
T ss_pred ccccccccccceeeecc-cccccccccccch-hHHHHhhcceeEEcCchhhhH---------------------------
Confidence 99999999999999997 9999999999999 999999999999999988764
Q ss_pred CCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCc
Q 012534 310 DPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTD 389 (461)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~ 389 (461)
.+.+.+++++..+|.+++.+|+.+++..
T Consensus 184 ---------------------------------------------~a~~~a~~l~~~~~~a~~~~K~~~~~~~------- 211 (245)
T PF00378_consen 184 ---------------------------------------------EALELAKRLAAKPPSALRATKKALNRAL------- 211 (245)
T ss_dssp ---------------------------------------------HHHHHHHHHHTSCHHHHHHHHHHHHHHH-------
T ss_pred ---------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Confidence 2333334799999999999999999875
Q ss_pred cccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534 390 NELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 426 (461)
Q Consensus 390 ~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K 426 (461)
...+.+.++.|.+.+..++.++|++||+++|+ +|
T Consensus 212 --~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~-eK 245 (245)
T PF00378_consen 212 --EQSLEEALEFEQDLFAECFKSEDFQEGIAAFL-EK 245 (245)
T ss_dssp --HSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT
T ss_pred --HhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHh-Cc
Confidence 56899999999999999999999999999999 56
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.6e-48 Score=376.67 Aligned_cols=244 Identities=17% Similarity=0.224 Sum_probs=215.8
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCC
Q 012534 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (461)
Q Consensus 65 ~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 144 (461)
++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 4 ~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~--- 78 (249)
T PRK07110 4 KVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQTGK--- 78 (249)
T ss_pred CceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccchh---
Confidence 45677776 789999999999999999999999999999999999999999999998 8999999999875321000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 145 PLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
..+.. ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||
T Consensus 79 --------------------------~~~~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe 131 (249)
T PRK07110 79 --------------------------GTFTE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANF 131 (249)
T ss_pred --------------------------hhHhh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCch
Confidence 01111 456778999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. +++++++||+.++ |+||+++|||+++||++++.+.+.
T Consensus 132 ~~~Gl~p~~g~~~~l~~~~g~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------- 190 (249)
T PRK07110 132 MKYGFTPGMGATAILPEKLGLA-LGQEMLLTARYYR-GAELKKRGVPFPVLPRAEVLEKAL------------------- 190 (249)
T ss_pred hccCCCCCchHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCeEEeChHHHHHHHH-------------------
Confidence 9999999999999999999998 9999999999999 999999999999999877654222
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
++|+ +|+++||.+++.+|++++...
T Consensus 191 -------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~-- 215 (249)
T PRK07110 191 -------------------------------------------------ELAR----SLAEKPRHSLVLLKDHLVADR-- 215 (249)
T ss_pred -------------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh--
Confidence 3443 799999999999999999876
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL 423 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl 423 (461)
...+.+.++.|...+...+.++|++||++++-
T Consensus 216 -------~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 216 -------RRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred -------hccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 56899999999999999999999999999864
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.6e-48 Score=376.28 Aligned_cols=246 Identities=23% Similarity=0.303 Sum_probs=211.3
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
+++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus 2 ~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~--- 76 (258)
T PRK06190 2 TEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSA--- 76 (258)
T ss_pred CCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccch---
Confidence 466788887 789999999999999999999999999999999999999999999997 899999999987531000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
. . .......++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 77 ---------------------~--~---~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~p 130 (258)
T PRK06190 77 ---------------------Y--G---AQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADT 130 (258)
T ss_pred ---------------------h--h---HHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECc
Confidence 0 0 0122345677899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|++|++|++++|++++|.. ++++|++||++++ |+||+++||||+++|++++.+.+.
T Consensus 131 e~~~Gl~p~~g~~~~l~r~vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~------------------ 190 (258)
T PRK06190 131 HARVGILPGWGLSVRLPQKVGIG-RARRMSLTGDFLD-AADALRAGLVTEVVPHDELLPRAR------------------ 190 (258)
T ss_pred ccccCcCCCccHHHHHHHHhCHH-HHHHHHHhCCccC-HHHHHHcCCCeEecCHhHHHHHHH------------------
Confidence 99999999999999999999997 9999999999999 999999999999999877654221
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
+||+ +|+++||.+++.+|++++...
T Consensus 191 --------------------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~- 215 (258)
T PRK06190 191 --------------------------------------------------RLAA----SIAGNNPAAVRALKASYDDGA- 215 (258)
T ss_pred --------------------------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh-
Confidence 4444 799999999999999999865
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCC--CcHHHHH-Hhhh
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLR--SDFAEGV-RAVL 423 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s--~d~~egv-~afl 423 (461)
..++.+.++.|...+...+.+ +++...+ .+|+
T Consensus 216 --------~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~ 250 (258)
T PRK06190 216 --------AAQTGDALALEAEAARAHNRSVSPDGIAARREAVM 250 (258)
T ss_pred --------cCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 568999999999999988877 4444333 3344
No 70
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.3e-46 Score=400.11 Aligned_cols=260 Identities=12% Similarity=0.030 Sum_probs=221.4
Q ss_pred ccceEEEEe-cCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEecCCCccccCC
Q 012534 65 EEFVKGNVH-PNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWES-DPRVKCVLIEGSGPRAFCAGM 129 (461)
Q Consensus 65 ~~~i~~~~~-~~~V~~ItLnrP~~~-------------Nal~~~m~~eL~~~l~~~~~-d~~vr~vVltg~G~~~FcaG~ 129 (461)
|+.+.++.+ +++|++||||||+++ |+||.+|+.+|.++++.++. |+++|+|||||.|+++||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 455566542 578999999999988 68999999999999999986 799999999999734999999
Q ss_pred ChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeC-Cccchhh-hHhhh
Q 012534 130 DIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD-GVTMGFG-IGISG 207 (461)
Q Consensus 130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavn-G~a~GgG-~~Lal 207 (461)
|++.+.. . +. ............++.+|.++||||||+|| |+|+||| ++|++
T Consensus 339 Dl~~~~~-~--~~------------------------~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLal 391 (550)
T PRK08184 339 DATLLAH-K--DH------------------------WLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELAL 391 (550)
T ss_pred Chhhhcc-c--ch------------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHH
Confidence 9883211 0 00 00011223334567789999999999997 9999999 99999
Q ss_pred cCCeEEEc-------CCceEeccccccCCCCCchHHHHHhcC-CCchHHHHHH--hhcCCCCCcHHHHHHcCccceecCC
Q 012534 208 HGRYRIVT-------EKTLLAMPENGIGLFPDVGFSYIAAKG-PGGGSVGAYL--GMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 208 acD~ria~-------e~a~f~~pe~~lGl~P~~G~~~~L~rl-vG~~~~a~~l--~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
+||+||++ ++++|++||+++|++|++|++++|+++ +|.. +++++ ++||+.|+ |+||+++||||++||+
T Consensus 392 acD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~-~A~~~~l~~tg~~i~-A~eA~~~GLv~~vv~~ 469 (550)
T PRK08184 392 AADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEP-DPLAAVRAKIGQPLD-ADAAEELGLVTAAPDD 469 (550)
T ss_pred HCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChH-HHHHHHHHHhCCcCC-HHHHHHcCCcccccCh
Confidence 99999999 999999999999999999999999988 7998 99997 58999999 9999999999999998
Q ss_pred CChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHH
Q 012534 278 GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWAD 357 (461)
Q Consensus 278 ~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~ 357 (461)
+++.+.+. ++|+
T Consensus 470 ~~l~~~a~--------------------------------------------------------------------~~a~ 481 (550)
T PRK08184 470 IDWEDEVR--------------------------------------------------------------------IALE 481 (550)
T ss_pred HHHHHHHH--------------------------------------------------------------------HHHH
Confidence 88764222 4444
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHHHH-HHHHHHHHHhhcCCCcHHH---HHHhhhcCCCCCCCCC
Q 012534 358 EALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---GVRAVLVDKDQNPKWN 433 (461)
Q Consensus 358 ~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~-l~~E~~~~~~~~~s~d~~e---gv~afl~~K~r~P~w~ 433 (461)
+|+.+||.+++.+|++++... ..++++. +..|.+.+..++.++|.+| |+++|+ +| |+|+|+
T Consensus 482 ----~ia~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~-ek-r~~~f~ 546 (550)
T PRK08184 482 ----ERASLSPDALTGMEANLRFAG---------PETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYG-TG-QKAQFD 546 (550)
T ss_pred ----HHHhCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhc-cC-CCCCCC
Confidence 799999999999999999876 5789999 9999999999999999999 999999 77 899998
Q ss_pred CCC
Q 012534 434 PAS 436 (461)
Q Consensus 434 ~~~ 436 (461)
..+
T Consensus 547 ~~~ 549 (550)
T PRK08184 547 WNR 549 (550)
T ss_pred CCC
Confidence 764
No 71
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-46 Score=397.87 Aligned_cols=259 Identities=13% Similarity=0.045 Sum_probs=220.8
Q ss_pred ccceEEEE-ecCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEecCCCc-cccC
Q 012534 65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRA-FCAG 128 (461)
Q Consensus 65 ~~~i~~~~-~~~~V~~ItLnrP~~~-------------Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~G~~~-FcaG 128 (461)
|.+|.+.. ++++|++||||||+++ |+||.+|+.+|.+++..++ +|+++|+|||||.| ++ ||+|
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~F~aG 333 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAELVLA 333 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCceecC
Confidence 45555543 3689999999999999 9999999999999999998 56999999999998 66 9999
Q ss_pred CChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEe-CCccchhh-hHhh
Q 012534 129 MDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLM-DGVTMGFG-IGIS 206 (461)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav-nG~a~GgG-~~La 206 (461)
+|++.+.. .+. ......+.....++.+|..++|||||+| ||+|+||| ++|+
T Consensus 334 ~Dl~~~~~---~~~------------------------~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLa 386 (546)
T TIGR03222 334 ADALLEAH---KDH------------------------WFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELA 386 (546)
T ss_pred cCcccccc---ccc------------------------hhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHH
Confidence 99983210 000 0001122233456778999999999999 89999999 9999
Q ss_pred hcCCeEEE-------cCCceEeccccccCCCCCchHHHHHhcCC-CchHHH--HHHhhcCCCCCcHHHHHHcCccceecC
Q 012534 207 GHGRYRIV-------TEKTLLAMPENGIGLFPDVGFSYIAAKGP-GGGSVG--AYLGMTGKRISTPSDALFAGLGTDYVP 276 (461)
Q Consensus 207 lacD~ria-------~e~a~f~~pe~~lGl~P~~G~~~~L~rlv-G~~~~a--~~l~LtG~~i~~A~eA~~~GLv~~vv~ 276 (461)
++||+||+ +++++|++||+++|++|++|++++|++++ |.. ++ +++++||+.|+ |+||+++|||++++|
T Consensus 387 lacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~-~a~~~~~~ltg~~i~-A~eA~~~Glv~~vv~ 464 (546)
T TIGR03222 387 FAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEP-APVAAVRDKIGQALD-AEEAERLGLVTAAPD 464 (546)
T ss_pred HhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCch-hHHHHHHHHhCCCCC-HHHHHHcCCcccccC
Confidence 99999999 89999999999999999999999999998 987 88 55999999999 999999999999999
Q ss_pred CCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHH
Q 012534 277 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWA 356 (461)
Q Consensus 277 ~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A 356 (461)
++++.+.+. +||
T Consensus 465 ~~~l~~~a~--------------------------------------------------------------------~~a 476 (546)
T TIGR03222 465 DIDWEDEIR--------------------------------------------------------------------IAL 476 (546)
T ss_pred chHHHHHHH--------------------------------------------------------------------HHH
Confidence 888764222 444
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHHHH-HHHHHHHHHhhcCCCcHHH---HHHhhhcCCCCCCCC
Q 012534 357 DEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---GVRAVLVDKDQNPKW 432 (461)
Q Consensus 357 ~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~-l~~E~~~~~~~~~s~d~~e---gv~afl~~K~r~P~w 432 (461)
+ +|+.+||.+++.+|++++... ..++++. +..|...+..++.++|.+| |+++|+ +| |+|+|
T Consensus 477 ~----~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~-ek-r~p~f 541 (546)
T TIGR03222 477 E----ERASFSPDALTGLEANLRFAG---------PETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYG-SG-KKAQF 541 (546)
T ss_pred H----HHHhcCHHHHHHHHHHHhhcC---------CcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHc-cC-CCCCC
Confidence 4 799999999999999999876 5789999 9999999999999999999 999999 77 89999
Q ss_pred CCCC
Q 012534 433 NPAS 436 (461)
Q Consensus 433 ~~~~ 436 (461)
+-.+
T Consensus 542 ~~~~ 545 (546)
T TIGR03222 542 DMER 545 (546)
T ss_pred CccC
Confidence 8543
No 72
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-46 Score=339.08 Aligned_cols=263 Identities=20% Similarity=0.270 Sum_probs=231.6
Q ss_pred ccceEEEE---ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534 65 EEFVKGNV---HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141 (461)
Q Consensus 65 ~~~i~~~~---~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~ 141 (461)
...+.++. .+.||.+|-+|||.+.|+|+.-|+++|.++++.+..|+.+|+|+|++.-++.||+|+||++-..+..
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~-- 103 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSP-- 103 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCH--
Confidence 34455553 3568999999999999999999999999999999999999999999988899999999999776432
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534 142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 221 (461)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~ 221 (461)
.+...|......++..|.++|.||||+|+|.|+|||++|+++||+|+++++++|+
T Consensus 104 -------------------------~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmG 158 (291)
T KOG1679|consen 104 -------------------------SEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMG 158 (291)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhcccc
Confidence 2345588888889999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534 222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV 301 (461)
Q Consensus 222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~ 301 (461)
++|++++++|+.||+++|+|++|.. .++||++||+.++ +.||...||||++|...+-.+.+.
T Consensus 159 LvET~laiiPGaGGtQRLpR~vg~a-laKELIftarvl~-g~eA~~lGlVnhvv~qneegdaa~---------------- 220 (291)
T KOG1679|consen 159 LVETKLAIIPGAGGTQRLPRIVGVA-LAKELIFTARVLN-GAEAAKLGLVNHVVEQNEEGDAAY---------------- 220 (291)
T ss_pred ccccceeeecCCCccchhHHHHhHH-HHHhHhhhheecc-chhHHhcchHHHHHhcCccccHHH----------------
Confidence 9999999999999999999999997 9999999999999 899999999999997654222111
Q ss_pred HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534 302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV 381 (461)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~ 381 (461)
+-|.+++++|.-+.|.+++++|..++.+
T Consensus 221 ----------------------------------------------------~kal~lA~eilp~gPiavr~aKlAIn~G 248 (291)
T KOG1679|consen 221 ----------------------------------------------------QKALELAREILPQGPIAVRLAKLAINLG 248 (291)
T ss_pred ----------------------------------------------------HHHHHHHHHhccCCchhhhHHHHHhccC
Confidence 3344445589999999999999999998
Q ss_pred hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCC
Q 012534 382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 435 (461)
Q Consensus 382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~ 435 (461)
. ..++...+..|-.-......+.|-.||+.+|- +| |+|.+++.
T Consensus 249 ~---------evdiasgl~iEe~CYaq~i~t~drLeglaaf~-ek-r~p~y~G~ 291 (291)
T KOG1679|consen 249 M---------EVDIASGLSIEEMCYAQIIPTKDRLEGLAAFK-EK-RKPEYKGE 291 (291)
T ss_pred c---------eecccccccHHHHHHHhcCcHHHHHHHHHHHH-hh-cCCCcCCC
Confidence 7 56888899888888888999999999999999 67 89998863
No 73
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.3e-45 Score=350.55 Aligned_cols=187 Identities=20% Similarity=0.275 Sum_probs=163.6
Q ss_pred ccceEEEEe----cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhh
Q 012534 65 EEFVKGNVH----PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK 140 (461)
Q Consensus 65 ~~~i~~~~~----~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~ 140 (461)
+++|.++.. +++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~ 79 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQ 79 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChh
Confidence 345555542 58999999999986 999999999999999999999999999999997 899999999987531100
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534 141 DRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 220 (461)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f 220 (461)
.....+.....++.++.++||||||+|||+|+|||++|+++|||||++++++|
T Consensus 80 ---------------------------~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f 132 (222)
T PRK05869 80 ---------------------------EADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKF 132 (222)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEE
Confidence 00112333456778899999999999999999999999999999999999999
Q ss_pred eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534 221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 282 (461)
Q Consensus 221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~ 282 (461)
++||+++|++|++|++++|++++|.. +++++++||+.++ |+||+++||||+++|++++.+
T Consensus 133 ~~pe~~~Gl~p~~g~~~~l~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~ 192 (222)
T PRK05869 133 GATEILAGLAPSGDGMARLTRAAGPS-RAKELVFSGRFFD-AEEALALGLIDEMVAPDDVYD 192 (222)
T ss_pred cCchhccCCCCCccHHHHHHHHhCHH-HHHHHHHcCCCcC-HHHHHHCCCCCEeeCchHHHH
Confidence 99999999999999999999999997 9999999999999 999999999999999877654
No 74
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-44 Score=359.99 Aligned_cols=260 Identities=19% Similarity=0.276 Sum_probs=203.2
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
+++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus 2 ~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 2 EYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCccccccccccccc
Confidence 466788887 789999999999999999999999999999999999999999999998 899999999986421110000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
.. ......|....... ...........+..++..|.++||||||+|||+|+|||++|+++|||||++++++|++|
T Consensus 80 ~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~p 154 (288)
T PRK08290 80 PD--QHPTLWWDGATKPG---VEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDP 154 (288)
T ss_pred cc--cccccccccccccc---hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCc
Confidence 00 00000000000000 00001112223345667889999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHH
Q 012534 224 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 303 (461)
Q Consensus 224 e~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~ 303 (461)
|+++|+ |+ ++++++++++|.. ++++|+|||+.|+ |+||+++||||++||++++.+.+
T Consensus 155 e~~lGl-~~-~~~~~l~~~iG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a------------------- 211 (288)
T PRK08290 155 VVRMGI-PG-VEYFAHPWELGPR-KAKELLFTGDRLT-ADEAHRLGMVNRVVPRDELEAET------------------- 211 (288)
T ss_pred ccccCc-Cc-chHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHH-------------------
Confidence 999998 54 4567789999998 9999999999999 99999999999999987765422
Q ss_pred HHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 304 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
.+|++ +|+++||.+++.+|++++...
T Consensus 212 -------------------------------------------------~~~a~----~la~~~~~a~~~~K~~~~~~~- 237 (288)
T PRK08290 212 -------------------------------------------------LELAR----RIAAMPPFGLRLTKRAVNQTL- 237 (288)
T ss_pred -------------------------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHH-
Confidence 24444 799999999999999999865
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhc-CCCc
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSS-LRSD 414 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~-~s~d 414 (461)
...++++++..|.+.....+ ++++
T Consensus 238 -------~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 238 -------DAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred -------hhccHHHHHHHHHHHHHHccccchh
Confidence 13369999999999998877 5555
No 75
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.1e-44 Score=393.77 Aligned_cols=289 Identities=20% Similarity=0.238 Sum_probs=223.3
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++.......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~----- 80 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAP----- 80 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCC-----
Confidence 4666644689999999999999999999999999999999999999999999998 8999999999875311000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
......+......++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 81 -------------------~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~ 141 (715)
T PRK11730 81 -------------------EEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETK 141 (715)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhh
Confidence 0011224445566778899999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.+++......... .
T Consensus 142 lGl~p~~g~~~~L~rlvG~~-~A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~--------~ 211 (715)
T PRK11730 142 LGIMPGFGGTVRLPRLIGAD-NALEWIAAGKDVR-AEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLD--------W 211 (715)
T ss_pred cCCCCCchHHHHHHHhcCHH-HHHHHHHcCCcCC-HHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCc--------c
Confidence 99999999999999999998 9999999999999 999999999999999999887777665431100000 0
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEAL-QGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~-~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
.....+...++.. ..+.++|. -..+++.+ ++.....|..+ .++++++...
T Consensus 212 ~~~~~~~~~p~a~--~~~~~~~~-----------------------~~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~--- 262 (715)
T PRK11730 212 KARRQPKLEPLKL--SKIEAMMS-----------------------FTTAKGMVAQKAGKHYPAPM-TAVKTIEAAA--- 262 (715)
T ss_pred ccccCcccccccc--cchhHHHH-----------------------HHHHHHHHHHhhccCCccHH-HHHHHHHHHh---
Confidence 0000000000000 00222221 12333322 34455566555 7778888776
Q ss_pred CCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcC
Q 012534 386 GKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVD 425 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~ 425 (461)
..+++++++.|.+.+..++.++|++||+++|+++
T Consensus 263 ------~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~ 296 (715)
T PRK11730 263 ------GLGRDEALELEAKGFVKLAKTNVARALVGIFLND 296 (715)
T ss_pred ------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999953
No 76
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.5e-43 Score=348.71 Aligned_cols=252 Identities=13% Similarity=0.079 Sum_probs=199.3
Q ss_pred CccceEEEE-ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEecCCCccccCCChhhHHHH
Q 012534 64 AEEFVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137 (461)
Q Consensus 64 ~~~~i~~~~-~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~-----d~~vr~vVltg~G~~~FcaG~Dl~~~~~~ 137 (461)
.++.++++. .+++|++|+|| |+++|+||.+|+.+|.+++++++. |+++|+|||+|.|+++||+|+|++++...
T Consensus 13 ~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~ 91 (287)
T PRK08788 13 ELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAEL 91 (287)
T ss_pred ccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhh
Confidence 455555543 26889999996 999999999999999999999998 89999999999944899999999987531
Q ss_pred hhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHh---hCCCcEEEEeCCccchhhhHhhhcCCeEEE
Q 012534 138 IQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIV 214 (461)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~kPvIAavnG~a~GgG~~LalacD~ria 214 (461)
..... ......+....+..+..+. .+||||||+|||+|+|||++|+++|||||+
T Consensus 92 ~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria 148 (287)
T PRK08788 92 IRAGD-----------------------RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIA 148 (287)
T ss_pred ccccc-----------------------hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEe
Confidence 10000 0001112222222333333 799999999999999999999999999999
Q ss_pred cCCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCC
Q 012534 215 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE 294 (461)
Q Consensus 215 ~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~ 294 (461)
+++++|++||+++|++|++|++++|++++|.. ++++|++||+.++ |+||++|||||++||++++.+.+
T Consensus 149 ~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~-~A~ellltG~~l~-A~eA~~~GLV~~vv~~~el~~~a---------- 216 (287)
T PRK08788 149 ERGAKMGFPEILFNLFPGMGAYSFLARRVGPK-LAEELILSGKLYT-AEELHDMGLVDVLVEDGQGEAAV---------- 216 (287)
T ss_pred cCCCEeeCchhhhCcCCCchHHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHH----------
Confidence 99999999999999999999999999999997 9999999999999 99999999999999988776422
Q ss_pred ChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHH
Q 012534 295 DPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLT 374 (461)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~t 374 (461)
.+|++ +|+++ |.++..+
T Consensus 217 ----------------------------------------------------------~~~a~----~ia~~-~~~~~a~ 233 (287)
T PRK08788 217 ----------------------------------------------------------RTFIR----KSKRK-LNGWRAM 233 (287)
T ss_pred ----------------------------------------------------------HHHHH----HHhcC-ccHHHHH
Confidence 24444 67776 7777777
Q ss_pred HHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHhhh
Q 012534 375 QKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLR-SDFAEGVRAVL 423 (461)
Q Consensus 375 k~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s-~d~~egv~afl 423 (461)
|+.++... ..++.+.++.|......++.. ..-++-|..|.
T Consensus 234 k~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (287)
T PRK08788 234 LRARRRVN---------PLSLEELMDITEIWVDAALQLEEKDLRTMERLV 274 (287)
T ss_pred HHHHHhhc---------cCCHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 77777654 357899999988777765543 34567777777
No 77
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=8.1e-45 Score=333.82 Aligned_cols=272 Identities=20% Similarity=0.311 Sum_probs=229.6
Q ss_pred CccceEEE--EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhc
Q 012534 64 AEEFVKGN--VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141 (461)
Q Consensus 64 ~~~~i~~~--~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~ 141 (461)
+|+.+.+. ..+..|.++.||||.|+||||..|+.|+.++|+.+..||+||+|||.|+| +.||+|+|+..+.......
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~~ 95 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRILQ 95 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhccc
Confidence 46655555 34567999999999999999999999999999999999999999999998 9999999988876542211
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534 142 RNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 221 (461)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~ 221 (461)
... + +..+.-..+.++...+++.+..|.+||||||++|||+|+|||+.|..+||+|+|+++|.|.
T Consensus 96 ~~~-----------d----d~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffs 160 (292)
T KOG1681|consen 96 PEG-----------D----DVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFS 160 (292)
T ss_pred ccc-----------c----hHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceee
Confidence 110 0 0112233455567777888999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHH
Q 012534 222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIV 301 (461)
Q Consensus 222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~ 301 (461)
.-|+.+|+..+.|...+||+++|..+.++++.+|++.|. |.||++.|||.+|+|+.+-.- ..+
T Consensus 161 vkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~-a~EAl~~GLvSrvf~dk~~ll-~~~--------------- 223 (292)
T KOG1681|consen 161 VKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFS-ADEALDSGLVSRVFPDKEELL-NGA--------------- 223 (292)
T ss_pred eeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcc-hhhhhhcCcchhhcCCHHHHH-hhh---------------
Confidence 999999999999999999999996669999999999999 999999999999998643210 011
Q ss_pred HHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012534 302 ALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV 381 (461)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~ 381 (461)
...|+ .|+.+||.+++.||+.|...
T Consensus 224 ---------------------------------------------------l~mA~----~Ia~KSpvaVqgTK~~L~ys 248 (292)
T KOG1681|consen 224 ---------------------------------------------------LPMAE----LIASKSPVAVQGTKENLLYS 248 (292)
T ss_pred ---------------------------------------------------HHHHH----HhccCCceeeechHHHHHHH
Confidence 14444 89999999999999999998
Q ss_pred hhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCC
Q 012534 382 ASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 433 (461)
Q Consensus 382 ~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~ 433 (461)
. ..+.++.|.+-..+....+.+.|+.+++.+-+ .|.+++.|.
T Consensus 249 r---------ehsv~~sLnyvatwNms~L~s~Dl~~av~a~m-~k~k~~tfs 290 (292)
T KOG1681|consen 249 R---------EHSVEESLNYVATWNMSMLLSDDLVKAVMAQM-EKLKTVTFS 290 (292)
T ss_pred h---------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCcc
Confidence 7 67999999999999999999999999999999 563344465
No 78
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=5.1e-43 Score=350.29 Aligned_cols=286 Identities=19% Similarity=0.156 Sum_probs=215.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
+++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++........
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~-------------- 103 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNP-------------- 103 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccCh--------------
Confidence 566999999999999999999999999999999999999999998679999999998754211000
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHH
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 236 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~ 236 (461)
.....+...++.++..|..++|||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 104 ----------~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt 173 (360)
T TIGR03200 104 ----------QEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGAT 173 (360)
T ss_pred ----------hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHH
Confidence 0111233344567788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhhcCCCCCC--
Q 012534 237 YIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGE-- 314 (461)
Q Consensus 237 ~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~~-- 314 (461)
++|++++|.. +|+++++||+.++ |+||+++|||+++||+.++.. .|..+|.-...+++..|......+
T Consensus 174 ~rLprlvG~~-rA~~llltGe~~s-A~EA~~~GLVd~VVp~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~ 243 (360)
T TIGR03200 174 DFLPLMIGCE-QAMVSGTLCEPWS-AHKAKRLGIIMDVVPALKVDG--------KFVANPLVVTDRYLDEFGRIVHGEFK 243 (360)
T ss_pred HHHHHhhCHH-HHHHHHHhCCcCc-HHHHHHcCChheecCchhcCc--------chhcCcccchHHHHHHHhHHhcCCCc
Confidence 9999999997 9999999999999 999999999999999877641 244455544445555544322222
Q ss_pred --chhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCcccc
Q 012534 315 --APLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL 392 (461)
Q Consensus 315 --~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~ 392 (461)
..+...+..+..+=. + ...+++-.+++..++...-|.++.-++..||... .
T Consensus 244 ~~~~~~~~k~~~~~~~~----------------~--~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~ 296 (360)
T TIGR03200 244 AGDELKAGKELIKQGTI----------------D--LSLLDEAVEALCAKLLNTFPECLTKSIEELRKPK---------L 296 (360)
T ss_pred chhHHHHHHHHHhcccc----------------h--HhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhHH---------H
Confidence 122222222222100 0 0001122223344688888999999999999876 4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhc
Q 012534 393 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV 424 (461)
Q Consensus 393 ~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~ 424 (461)
..+...-..-...+...+. .+..+|++||-+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 327 (360)
T TIGR03200 297 FAWNQNKENSRAWLALNMM-NEARTGFRAFNE 327 (360)
T ss_pred HHHHhhhhhhHHHHHhhcc-cccchhhHHHhc
Confidence 4555555555556655555 889999999984
No 79
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-43 Score=353.92 Aligned_cols=208 Identities=20% Similarity=0.259 Sum_probs=161.8
Q ss_pred CccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCC
Q 012534 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 143 (461)
.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus 8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhccccccc
Confidence 466788887 789999999999999999999999999999999999999999999998 899999999998642211000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhHH--HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534 144 TPLVPKVPLKCGDVKEISTQNQLSE--MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 221 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~ 221 (461)
.... .++.............. ...++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|+
T Consensus 86 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~ 161 (302)
T PRK08272 86 GGAY----PGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIG 161 (302)
T ss_pred cccc----ccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEec
Confidence 0000 00000000000000000 00123444567778899999999999999999999999999999999999999
Q ss_pred ccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534 222 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 282 (461)
Q Consensus 222 ~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~ 282 (461)
+||+++|.+|+. ..+++++|.. +|++|+|||+.|+ |+||+++||||++||++++.+
T Consensus 162 ~pe~~~gg~~~~---~~~~~~vG~~-~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~ 217 (302)
T PRK08272 162 YPPTRVWGVPAT---GMWAYRLGPQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAVPPEELDE 217 (302)
T ss_pred CcchhcccCChH---HHHHHHhhHH-HHHHHHHcCCccC-HHHHHHcCCCceecCHHHHHH
Confidence 999998666643 3567789997 9999999999999 999999999999999877654
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=6.5e-43 Score=384.96 Aligned_cols=284 Identities=20% Similarity=0.236 Sum_probs=222.1
Q ss_pred eEEEEecCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP-~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
+.++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++......
T Consensus 7 ~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~------ 80 (708)
T PRK11154 7 FTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTA------ 80 (708)
T ss_pred EEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCH------
Confidence 555655689999999999 6899999999999999999999999999999999766899999999987531100
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC--ceEeccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPE 224 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~--a~f~~pe 224 (461)
.....+......++.+|.++||||||+|||+|+|||++|+++|||||++++ ++|++||
T Consensus 81 --------------------~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe 140 (708)
T PRK11154 81 --------------------QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPE 140 (708)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCcc
Confidence 001113334456778899999999999999999999999999999999986 5899999
Q ss_pred cccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHH
Q 012534 225 NGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL 304 (461)
Q Consensus 225 ~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l 304 (461)
+++|++|++|++++|++++|.. +|++|++||+.++ |+||+++||||++||++++.+.+.+++...+...+.....
T Consensus 141 ~~lGl~p~~gg~~~L~r~vG~~-~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~--- 215 (708)
T PRK11154 141 VQLGLLPGSGGTQRLPRLIGVS-TALDMILTGKQLR-AKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVR--- 215 (708)
T ss_pred ccCCCCCCccHHhHHHhhcCHH-HHHHHHHhCCcCC-HHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCch---
Confidence 9999999999999999999998 9999999999999 9999999999999999998887777765411000000000
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCC-ccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSE-KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 383 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~-~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~ 383 (461)
. .+ .+.. .....+ -+.+++.+.+-.+..-.|+..+|++++.+.
T Consensus 216 ----------~-------~~---~~~~p~~~~~~---------------~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~- 259 (708)
T PRK11154 216 ----------E-------RL---LEGNPLGRALL---------------FKQARKKTLAKTQGNYPAPERILDVVRTGL- 259 (708)
T ss_pred ----------h-------hh---cccCchhHHHH---------------HHHHHHHHHHhcccCChHHHHHHHHHHHHh-
Confidence 0 00 0000 000111 122332222333444579999999999876
Q ss_pred hcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534 384 AHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 426 (461)
Q Consensus 384 ~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K 426 (461)
..++.+++..|.+.+..++.++|+++|+++|+.++
T Consensus 260 --------~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~ 294 (708)
T PRK11154 260 --------EKGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294 (708)
T ss_pred --------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999643
No 81
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-42 Score=335.10 Aligned_cols=223 Identities=22% Similarity=0.210 Sum_probs=190.7
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++ +++++|||+|.| ++||+|+|++++.... .
T Consensus 4 ~i~~~~-~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~~-~------ 71 (229)
T PRK06213 4 LVSYTL-EDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSGA-Q------ 71 (229)
T ss_pred eEEEEe-cCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcch-H------
Confidence 477776 7899999999985 69999999999999999998 457999999998 8999999999875310 0
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEecccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPEN 225 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~ 225 (461)
....++.....++.++.++||||||+|||+|+|||++|+++|||||++++ ++|++||+
T Consensus 72 ---------------------~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~ 130 (229)
T PRK06213 72 ---------------------AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEV 130 (229)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchh
Confidence 11224455567788899999999999999999999999999999999999 99999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA 305 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~ 305 (461)
++|++|+.|+..++++.+|.. .++++++||+.++ |+||+++||||+++|++++.+.+
T Consensus 131 ~~Gl~~~~~~~~~l~~~~g~~-~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a--------------------- 187 (229)
T PRK06213 131 AIGMTMPHAAIELARDRLTPS-AFQRAVINAEMFD-PEEAVAAGFLDEVVPPEQLLARA--------------------- 187 (229)
T ss_pred hhCCcCChHHHHHHHHHcCHH-HHHHHHHcCcccC-HHHHHHCCCceeccChHHHHHHH---------------------
Confidence 999998888888899999997 9999999999999 99999999999999987765322
Q ss_pred hhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhc
Q 012534 306 KYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH 385 (461)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~ 385 (461)
.+||+ +|++.+|.+++.+|++++...
T Consensus 188 -----------------------------------------------~~~a~----~la~~~~~a~~~~K~~l~~~~--- 213 (229)
T PRK06213 188 -----------------------------------------------QAAAR----ELAGLNMGAHAATKLKVRAAA--- 213 (229)
T ss_pred -----------------------------------------------HHHHH----HHhcCCHHHHHHHHHHHHHHH---
Confidence 14444 799999999999999999865
Q ss_pred CCCccccCCHHHHHHHHHHH
Q 012534 386 GKTDNELSKLSGVMKYEYRV 405 (461)
Q Consensus 386 ~~~~~~~~~l~~~l~~E~~~ 405 (461)
...+.+.++.|.+.
T Consensus 214 ------~~~l~~~~~~~~~~ 227 (229)
T PRK06213 214 ------LEAIRAAIEGDAAE 227 (229)
T ss_pred ------HHHHHhchhhhhhh
Confidence 45677777777654
No 82
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.2e-44 Score=326.24 Aligned_cols=261 Identities=23% Similarity=0.293 Sum_probs=216.9
Q ss_pred CCccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEec--CCCccccCCChhhHHHHhhh
Q 012534 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGMDIKGVVAEIQK 140 (461)
Q Consensus 63 ~~~~~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~--G~~~FcaG~Dl~~~~~~~~~ 140 (461)
..|+.|++++..++|+.||+|||+++||+.+..+.||.++|..+..|++|.+|||||. |+++||+|+|-+-.......
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY 94 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY 94 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence 3588899998558999999999999999999999999999999999999999999975 78899999998864431100
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE
Q 012534 141 DRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 220 (461)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f 220 (461)
....... .-...++.+.|+.+||||||.|+|+|+|||-.|-+.||+-||+++|+|
T Consensus 95 -~~d~~~~------------------------rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~F 149 (282)
T COG0447 95 -VDDDGIP------------------------RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIF 149 (282)
T ss_pred -cCCccCc------------------------ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchh
Confidence 0000000 011234566799999999999999999999999999999999999999
Q ss_pred eccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHH
Q 012534 221 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI 300 (461)
Q Consensus 221 ~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~ 300 (461)
++...++|-+-++.++.+|.|++|.. +|+|+.+.++.++ |+||+++|+||.|||.++|++ +.+
T Consensus 150 gQTgp~VGSFD~G~Gs~ylar~VGqK-kArEIwfLcR~Y~-A~eal~MGlVN~Vvp~~~LE~--e~v------------- 212 (282)
T COG0447 150 GQTGPKVGSFDGGYGSSYLARIVGQK-KAREIWFLCRQYD-AEEALDMGLVNTVVPHADLEK--ETV------------- 212 (282)
T ss_pred cCCCCCcccccCcccHHHHHHHhhhh-hhHHhhhhhhhcc-HHHHHhcCceeeeccHHHHHH--HHH-------------
Confidence 99999999988777788899999998 9999999999999 999999999999999999875 222
Q ss_pred HHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012534 301 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK 380 (461)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~ 380 (461)
+||+ .|.++||+|++..|..++.
T Consensus 213 -----------------------------------------------------~W~~----E~l~kSP~AlR~LK~Afna 235 (282)
T COG0447 213 -----------------------------------------------------QWAR----EMLAKSPTALRMLKAAFNA 235 (282)
T ss_pred -----------------------------------------------------HHHH----HHHhcChHHHHHHHHHhcC
Confidence 8888 7999999999999999986
Q ss_pred HhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 381 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
-. ..+.-.-+..-+...-.+.+++.+||..||+ +| |+|.|+.
T Consensus 236 d~----------DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~-eK-R~Pdf~~ 277 (282)
T COG0447 236 DC----------DGLAGLQELAGNATLLYYMTDEAQEGRDAFL-EK-RKPDFSK 277 (282)
T ss_pred CC----------chhhHHHHhcccceEEEEechhhhhhHHHHh-hc-cCCChHh
Confidence 33 3443333333333344568999999999999 78 8999864
No 83
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1e-41 Score=374.63 Aligned_cols=281 Identities=17% Similarity=0.223 Sum_probs=220.5
Q ss_pred EEEecCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534 70 GNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLI-EGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (461)
Q Consensus 70 ~~~~~~~V~~ItLnrP-~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVl-tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (461)
++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+||| +|.| ++||+|+|++++......
T Consensus 4 ~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~------- 75 (699)
T TIGR02440 4 LTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTA------- 75 (699)
T ss_pred EEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCCh-------
Confidence 3444789999999999 68999999999999999999999999999997 5665 899999999987531100
Q ss_pred CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC--ceEecccc
Q 012534 148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPEN 225 (461)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~--a~f~~pe~ 225 (461)
.....+....+.++..|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+
T Consensus 76 -------------------~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev 136 (699)
T TIGR02440 76 -------------------GEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEV 136 (699)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhh
Confidence 011123444566778899999999999999999999999999999999986 79999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhccc-CCChHHHHHHHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTF-SEDPHQDIVALL 304 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~-~~~~~~~~~~~l 304 (461)
++|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.+++.... ...|. ...
T Consensus 137 ~lGl~p~~g~~~~L~r~vG~~-~A~~llltG~~~~-a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~-~~~--- 210 (699)
T TIGR02440 137 QLGLLPGSGGTQRLPRLIGVS-TALDMILTGKQLR-AKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL-SLQ--- 210 (699)
T ss_pred cccCCCCccHHHHHHHhcCHH-HHHHHHHcCCcCC-HHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc-cch---
Confidence 999999999999999999998 9999999999999 9999999999999999999887777764300 00000 000
Q ss_pred HhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 012534 305 AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~ 384 (461)
.+....++ .....++ +++.+.+++-....-.|...+|++++.+.
T Consensus 211 ~~~~~~~~-------------------~a~~~~~---------------~~~~k~~~~~~~~~~~a~~~~~~~i~~~~-- 254 (699)
T TIGR02440 211 ERLLEGTP-------------------LGRALLF---------------DQAAKKTAKKTQGNYPAAERILDVVRQGL-- 254 (699)
T ss_pred hhhcccCc-------------------hhHHHHH---------------HHHHHHHHHhcccCChhHHHHHHHHHHHh--
Confidence 00000000 0111111 22333333344556788999999999887
Q ss_pred cCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534 385 HGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 426 (461)
Q Consensus 385 ~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K 426 (461)
..++.++++.|.+.+..++.++|+++++++|+.++
T Consensus 255 -------~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~ 289 (699)
T TIGR02440 255 -------AQGMQKGLDAEARAFGELVMTPESAALRSIFFATT 289 (699)
T ss_pred -------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999644
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=8.4e-42 Score=375.55 Aligned_cols=291 Identities=19% Similarity=0.221 Sum_probs=222.7
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 67 ~i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
.+.++..+++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~----- 80 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALP----- 80 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCC-----
Confidence 5777755789999999999999999999999999999999999999999999998 7999999999985311000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG 226 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~ 226 (461)
......++.....++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||++
T Consensus 81 -------------------~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~ 141 (714)
T TIGR02437 81 -------------------DAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETK 141 (714)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhh
Confidence 0011123344456778899999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHh
Q 012534 227 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK 306 (461)
Q Consensus 227 lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~ 306 (461)
+|++|++|++++|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+.+++.......+ ..
T Consensus 142 lGl~Pg~Ggt~rL~rliG~~-~A~~llltG~~~~-A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~--------~~ 211 (714)
T TIGR02437 142 LGIMPGFGGTVRLPRVIGAD-NALEWIASGKENR-AEDALKVGAVDAVVTADKLGAAALQLLKDAINGKL--------DW 211 (714)
T ss_pred cCCCCCccHHHHHHHHhCHH-HHHHHHHcCCcCC-HHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCC--------cc
Confidence 99999999999999999998 9999999999999 99999999999999999988877777543111000 00
Q ss_pred hcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcC
Q 012534 307 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 386 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~ 386 (461)
......+...+ ....+.++|.. +++++.+.+.......+...+.+.++.+.
T Consensus 212 ~~~~~~~~~~~--~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~pap~~~~~~v~~~~---- 262 (714)
T TIGR02437 212 KAKRQPKLEPL--KLSKIEAMMSF-----------------------TTAKGMVAQVAGPHYPAPMTAVKTIEKAA---- 262 (714)
T ss_pred cccCCCCcccc--cccchHHHHHH-----------------------HHHHHHHHHhhcCCCCCHHHHHHHHHHHh----
Confidence 00000000000 01123333221 22232222233443344545556777765
Q ss_pred CCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534 387 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 426 (461)
Q Consensus 387 ~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K 426 (461)
..+++++++.|.+.+..++.|++.+..++.|+.++
T Consensus 263 -----~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r 297 (714)
T TIGR02437 263 -----RFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQ 297 (714)
T ss_pred -----cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhH
Confidence 46799999999999999999999999999999653
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2.2e-40 Score=365.09 Aligned_cols=299 Identities=19% Similarity=0.204 Sum_probs=217.4
Q ss_pred ccccCCccceEEEEecCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEecCCCccccCCChhhHHH
Q 012534 59 MAAAGAEEFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCV-LIEGSGPRAFCAGMDIKGVVA 136 (461)
Q Consensus 59 ~~~~~~~~~i~~~~~~~~V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~v-Vltg~G~~~FcaG~Dl~~~~~ 136 (461)
+.+.+.++.+.++. +++|++||||||+ +.|+||.+|+.+|.++++.++.|+++|+| |++|.| ++||+|+|++++..
T Consensus 6 ~~~~~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~ 83 (737)
T TIGR02441 6 SAALMARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAA 83 (737)
T ss_pred CCCCCCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhc
Confidence 33345677788887 7999999999998 58999999999999999999999999965 568987 89999999999853
Q ss_pred HhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcC
Q 012534 137 EIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 216 (461)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e 216 (461)
.... .....+......++.+|.++||||||+|||+|+|||++|+++||||||++
T Consensus 84 ~~~~--------------------------~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~ 137 (737)
T TIGR02441 84 CKTA--------------------------QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATK 137 (737)
T ss_pred cCCh--------------------------HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcC
Confidence 1000 01122344456678899999999999999999999999999999999998
Q ss_pred C--ceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC-------------CChH
Q 012534 217 K--TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-------------GNLG 281 (461)
Q Consensus 217 ~--a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~-------------~~l~ 281 (461)
+ ++|++||+++|++|++|++++|++++|.. +|++|++||++++ |+||+++||||++||+ +++.
T Consensus 138 ~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~-~A~~l~ltG~~i~-a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~ 215 (737)
T TIGR02441 138 DRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVP-AALDMMLTGKKIR-ADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLE 215 (737)
T ss_pred CCCCeEecchhhhCCCCCccHhhhHHHhhCHH-HHHHHHHcCCcCC-HHHHHHCCCCeEecCCcccccccchhhhHHHHH
Confidence 7 58999999999999999999999999998 9999999999999 9999999999999986 2233
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHH
Q 012534 282 SLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQ 361 (461)
Q Consensus 282 ~~~~ala~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~ 361 (461)
+.+.+++....... ...+++...+++..... .........++ +.+++.+.
T Consensus 216 ~~A~~~a~~l~~~~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~---------------~~~~~~~~ 265 (737)
T TIGR02441 216 EVAVKFAQGLANGK------LSINRDKGLVHKITQYV---------MTNPFVRQQVY---------------KTAEDKVM 265 (737)
T ss_pred HHHHHHHHHhhccc------CCccccccccCccchhh---------cccchhHHHHH---------------HHHHHHHH
Confidence 33333321100000 00000000000000000 00000001111 22222222
Q ss_pred HHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534 362 GMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 426 (461)
Q Consensus 362 ~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K 426 (461)
+-.+....|...+.+++..+. ..+++++++.|.+.+..++.|++.+.-++.|+.++
T Consensus 266 ~~~~g~~~Ap~~~l~~v~~~~---------~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~ 321 (737)
T TIGR02441 266 KQTKGLYPAPLKILDVVRTGY---------DQGPDAGYEAESKAFGELSMTFESKALIGLFHGQT 321 (737)
T ss_pred HhccCCCccHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 223343556666777888766 56899999999999999999999999999998643
No 86
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=5.9e-40 Score=317.61 Aligned_cols=185 Identities=16% Similarity=0.166 Sum_probs=153.5
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEecCCCccccCCChhhHHHHhhhcCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK-CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr-~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 146 (461)
+.++. +++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++.... . .
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~--~-~--- 72 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAG--S-A--- 72 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccc--c-C---
Confidence 45665 78999999999986 9999999999999999999999875 77778887 8999999999864210 0 0
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEc-CCceEecccc
Q 012534 147 VPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPEN 225 (461)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~-e~a~f~~pe~ 225 (461)
......+...+..++.+|.++||||||+|||+|+|||++|+++||+||++ ++++|++||+
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~ 133 (239)
T PLN02267 73 -------------------PSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEV 133 (239)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEecccc
Confidence 00111133344567788999999999999999999999999999999998 5689999999
Q ss_pred ccCCCCCchHHHHHhcCCCchHHH-HHHhhcCCCCCcHHHHHHcCccceecCC-CChHH
Q 012534 226 GIGLFPDVGFSYIAAKGPGGGSVG-AYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGS 282 (461)
Q Consensus 226 ~lGl~P~~G~~~~L~rlvG~~~~a-~~l~LtG~~i~~A~eA~~~GLv~~vv~~-~~l~~ 282 (461)
++|++|+++++.+|++++|.. ++ ++|++||+.++ |+||+++||||+++|+ +++.+
T Consensus 134 ~~Gl~~p~~~~~~l~~~vG~~-~a~~~llltG~~~~-a~eA~~~Glv~~vv~~~~~l~~ 190 (239)
T PLN02267 134 DIGLPLPDYFMALLRAKIGSP-AARRDVLLRAAKLT-AEEAVEMGIVDSAHDSAEETVE 190 (239)
T ss_pred ccCCCCChHHHHHHHHHcChH-HHHHHHHHcCCcCC-HHHHHHCCCcceecCCHHHHHH
Confidence 999974444578999999987 88 69999999999 9999999999999985 45543
No 87
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=306.36 Aligned_cols=258 Identities=20% Similarity=0.279 Sum_probs=223.6
Q ss_pred CccceEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcC
Q 012534 64 AEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (461)
Q Consensus 64 ~~~~i~~~~~~~~V~~ItLn-rP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~ 142 (461)
.+..+.+++ +||+.+|.+| ||++.|+|+.+|+.++..+|+.+.+|+++..++++|.| ++||+|.|++.+......+.
T Consensus 5 ~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 5 RYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred cccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCCCcc
Confidence 356677776 7999999999 99999999999999999999999999999999999998 89999999999886543322
Q ss_pred CCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 143 NTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
... ....-.+...+-.+...+..+|||+||.|||+|+|-|+.+...||+++|+|++.|..
T Consensus 83 ~~~--------------------~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~T 142 (266)
T KOG0016|consen 83 NEE--------------------SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQT 142 (266)
T ss_pred ccc--------------------chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEec
Confidence 111 011111222223466788999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHH
Q 012534 223 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA 302 (461)
Q Consensus 223 pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~ 302 (461)
|++++|..|++|+++.||+++|.. .|.||++.|++++ |+||++.|||+++++.+++.+
T Consensus 143 Pfa~lGq~PEG~Ss~t~p~imG~~-~A~E~ll~~~klt-A~Ea~~~glVskif~~~tf~~-------------------- 200 (266)
T KOG0016|consen 143 PFAKLGQSPEGCSSVTLPKIMGSA-SANEMLLFGEKLT-AQEACEKGLVSKIFPAETFNE-------------------- 200 (266)
T ss_pred cchhcCCCCCcceeeeehHhhchh-hHHHHHHhCCccc-HHHHHhcCchhhhcChHHHHH--------------------
Confidence 999999999999999999999997 9999999999999 999999999999999877653
Q ss_pred HHHhhcCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 012534 303 LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 382 (461)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~ 382 (461)
-+.+.++++++.+|.+++..|++++...
T Consensus 201 ----------------------------------------------------~v~~~ikq~s~l~p~sl~~~K~L~rs~~ 228 (266)
T KOG0016|consen 201 ----------------------------------------------------EVLKKIKQYSKLSPESLLGMKKLLRSNI 228 (266)
T ss_pred ----------------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 2223345788999999999999999877
Q ss_pred hhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCC
Q 012534 383 SAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 426 (461)
Q Consensus 383 ~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K 426 (461)
...+..+.+.|.......|.++|+...+.+|+.++
T Consensus 229 ---------k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 229 ---------KEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred ---------HHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 56899999999999999999999999999999543
No 88
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=1.1e-37 Score=291.86 Aligned_cols=192 Identities=32% Similarity=0.452 Sum_probs=172.6
Q ss_pred EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (461)
Q Consensus 69 ~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 148 (461)
.+++ +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||.| +.||+|+|++++.......
T Consensus 2 ~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~------- 72 (195)
T cd06558 2 LVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAG------- 72 (195)
T ss_pred EEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccc-------
Confidence 4555 679999999999999999999999999999999999999999999995 8999999999987532110
Q ss_pred CCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccC
Q 012534 149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG 228 (461)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lG 228 (461)
.....++...+.++.++..++||+||+|||+|+|+|++++++||+||++++++|++||+++|
T Consensus 73 ------------------~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G 134 (195)
T cd06558 73 ------------------EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLG 134 (195)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcC
Confidence 01334677778889999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHh
Q 012534 229 LFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 289 (461)
Q Consensus 229 l~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~ 289 (461)
++|+.|++++|++++|.. .+.+++++|+.++ |+||+++|||+++++.+++.+.+.+++.
T Consensus 135 ~~p~~g~~~~l~~~~g~~-~a~~~~l~g~~~~-a~ea~~~Glv~~~~~~~~l~~~a~~~a~ 193 (195)
T cd06558 135 LVPGGGGTQRLPRLVGPA-RARELLLTGRRIS-AEEALELGLVDEVVPDEELLAAALELAR 193 (195)
T ss_pred CCCCCcHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHcCCCCeecChhHHHHHHHHHHh
Confidence 999999999999999987 9999999999999 9999999999999999888876666543
No 89
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=280.85 Aligned_cols=253 Identities=24% Similarity=0.356 Sum_probs=217.9
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCC
Q 012534 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (461)
Q Consensus 68 i~~~~~~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (461)
.+++. +++|-.|+||+|+++|.|+.+|+.+|.+.|....++.++|+|||+..| +.||+|.||+++......
T Consensus 34 g~~~~-~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~------- 104 (287)
T KOG1682|consen 34 GLVKE-HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGS------- 104 (287)
T ss_pred ccccc-ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccc-------
Confidence 34444 589999999999999999999999999999999999999999999998 899999999999753211
Q ss_pred CCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecccccc
Q 012534 148 PKVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 227 (461)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~l 227 (461)
+.-.+.|...-+++..|+++|+|||+-|||+|..+||.|...||++|++++++|..|...+
T Consensus 105 -------------------d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~v 165 (287)
T KOG1682|consen 105 -------------------DIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGV 165 (287)
T ss_pred -------------------hHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCce
Confidence 1123467777788899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHhcccCCChHHHHHHHHHhh
Q 012534 228 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 307 (461)
Q Consensus 228 Gl~P~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala~~~~~~~~~~~~~~~l~~~ 307 (461)
|++...-| .-|.|.+.+. .+.+|++||.+|+ ++||+..|||+++||.++++..++.+
T Consensus 166 GlFCSTPG-vAlaRavpRk-va~~ML~Tg~Pi~-~eeAl~sGlvskvVp~~el~~e~~~i-------------------- 222 (287)
T KOG1682|consen 166 GLFCSTPG-VALARAVPRK-VAAYMLMTGLPIT-GEEALISGLVSKVVPAEELDKEIEEI-------------------- 222 (287)
T ss_pred eeEecCcc-hhHhhhcchh-HHHHHHHhCCCCc-hHHHHHhhhhhhcCCHHHHHHHHHHH--------------------
Confidence 98643322 2478888887 9999999999999 99999999999999999987543333
Q ss_pred cCCCCCCchhhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCC
Q 012534 308 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 387 (461)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~ 387 (461)
+ .+|...|...+.+-|+.+....
T Consensus 223 ------------------------------------------------~----~~i~~~srav~slgk~f~y~q~----- 245 (287)
T KOG1682|consen 223 ------------------------------------------------T----NAIKAKSRAVISLGKEFYYKQL----- 245 (287)
T ss_pred ------------------------------------------------H----HHHhhhHHHHHHHHHHHHHHHH-----
Confidence 2 2577888888888999888765
Q ss_pred CccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCC
Q 012534 388 TDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 434 (461)
Q Consensus 388 ~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~ 434 (461)
..+-.+++....+.....+.-.|.+||+.+|+ +| |+|+|++
T Consensus 246 ----~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~-~k-rp~~~~h 286 (287)
T KOG1682|consen 246 ----AMSQAEAFSAAQEKMCENFQLGDTKEGIASFF-EK-RPPNWKH 286 (287)
T ss_pred ----HHhHHHHHHHHHHHHhhcccccchHHHHHHHh-cc-CCCCcCC
Confidence 56778899999999999999999999999999 78 8999987
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=3.3e-37 Score=327.07 Aligned_cols=201 Identities=15% Similarity=0.183 Sum_probs=167.6
Q ss_pred CCccceEEEEecCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEecCCCccccCCCh
Q 012534 63 GAEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI 131 (461)
Q Consensus 63 ~~~~~i~~~~~~~~V~~ItLnrP~----------~~Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~G~~~FcaG~Dl 131 (461)
..++.+.++. +++|++||||||+ ++|+||.+|+.+|.++++.++ .|+++|+|||||.|+++||+|+|+
T Consensus 8 ~~~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL 86 (546)
T TIGR03222 8 SQYRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI 86 (546)
T ss_pred CCCceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence 4567888887 6899999999976 899999999999999999999 799999999999755899999999
Q ss_pred hhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHH-HHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC
Q 012534 132 KGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTA-EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 210 (461)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD 210 (461)
+++....... . . ....+... ...+...+.++||||||+|||+|+|||++|+++||
T Consensus 87 ~~~~~~~~~~--~-------------------~---~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD 142 (546)
T TIGR03222 87 FMLGLSTHAW--K-------------------V---NFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACD 142 (546)
T ss_pred HHHhccccch--h-------------------h---hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCC
Confidence 9874210000 0 0 00011111 12244567889999999999999999999999999
Q ss_pred eEEEcCC--ceEeccccc-cCCCCCchHHHHHh--cCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHH
Q 012534 211 YRIVTEK--TLLAMPENG-IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKE 285 (461)
Q Consensus 211 ~ria~e~--a~f~~pe~~-lGl~P~~G~~~~L~--rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ 285 (461)
+||++++ ++|++||++ +|++|++|++.+++ +.+|.. +|++|++||+.|+ |+||++|||||++||++++.+.+.
T Consensus 143 ~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~ 220 (546)
T TIGR03222 143 EIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRD-HADIFCTIEEGVR-GKRAKEWRLVDEVVKPSQFDAAIA 220 (546)
T ss_pred EEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHH-HHHHHHHcCCCcc-HHHHHHcCCceEEeChHHHHHHHH
Confidence 9999986 799999997 99999999999997 689997 9999999999999 999999999999999998887766
Q ss_pred HHHhc
Q 012534 286 ALLAV 290 (461)
Q Consensus 286 ala~~ 290 (461)
++++.
T Consensus 221 ~lA~~ 225 (546)
T TIGR03222 221 ERAAE 225 (546)
T ss_pred HHHHH
Confidence 66544
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.1e-36 Score=324.04 Aligned_cols=200 Identities=16% Similarity=0.214 Sum_probs=166.3
Q ss_pred CCccceEEEEecCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEecCCCccccCCCh
Q 012534 63 GAEEFVKGNVHPNGVAVITLDRP-------K---ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI 131 (461)
Q Consensus 63 ~~~~~i~~~~~~~~V~~ItLnrP-------~---~~Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~G~~~FcaG~Dl 131 (461)
++++.+.++. +++|++|||||| + ++|+||.+|+.+|.++++.++ .|+++|+|||||.|+++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 5678899987 689999999965 4 899999999999999999999 789999999999866899999999
Q ss_pred hhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHH-HHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC
Q 012534 132 KGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 210 (461)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD 210 (461)
+++....... .. ....+.... ..+...+.++||||||+|||+|+|||++|+++||
T Consensus 91 ~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD 146 (550)
T PRK08184 91 FMLGGSSHAW-----------------------KV-NFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACD 146 (550)
T ss_pred HhHhccccch-----------------------hh-hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCC
Confidence 9864311000 00 000011111 1234467889999999999999999999999999
Q ss_pred eEEEcCC--ceEeccccc-cCCCCCchHHHHHh--cCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHH
Q 012534 211 YRIVTEK--TLLAMPENG-IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKE 285 (461)
Q Consensus 211 ~ria~e~--a~f~~pe~~-lGl~P~~G~~~~L~--rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ 285 (461)
|||++++ ++|++||++ +|++|++|++++|+ +.+|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 147 ~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~-~A~~llltG~~i~-AeeA~~~GLVd~vv~~d~l~~~a~ 224 (550)
T PRK08184 147 EIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRD-LADIFCTIEEGVR-GKRAVDWRLVDEVVKPSKFDAKVA 224 (550)
T ss_pred EEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHH
Confidence 9999987 899999997 99999999999998 779987 9999999999999 999999999999999988877665
Q ss_pred HHHh
Q 012534 286 ALLA 289 (461)
Q Consensus 286 ala~ 289 (461)
+++.
T Consensus 225 ~~A~ 228 (550)
T PRK08184 225 ERAA 228 (550)
T ss_pred HHHH
Confidence 5543
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.91 E-value=4.5e-24 Score=184.13 Aligned_cols=117 Identities=44% Similarity=0.760 Sum_probs=101.0
Q ss_pred hhhchhHHHhhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHH
Q 012534 317 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS 396 (461)
Q Consensus 317 ~~~~~~~i~~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~ 396 (461)
+..+.+.|++||+.+ |+++|+++|+... .+||.++++.|.++||+|+++|.++++++. ..++.
T Consensus 2 L~~~~~~I~~~F~~~-s~~eI~~~L~~~~-------~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~---------~~sl~ 64 (118)
T PF13766_consen 2 LAEHLEAIDRCFSAD-SVEEIIEALEADG-------DEWAQKTLETLRSGSPLSLKVTFEQLRRGR---------NLSLA 64 (118)
T ss_dssp CHHCHHHHHHHTTSS-SHHHHHHHHHHHS--------HHHHHHHHHHCCS-HHHHHHHHHHHHCCT---------TS-HH
T ss_pred hHHHHHHHHHHhCCC-CHHHHHHHHHccC-------cHHHHHHHHHHHHCCHHHHHHHHHHHHHhh---------hCCHH
Confidence 566788999999988 9999999999965 499999999999999999999999999987 68999
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHhhhcCCCCCCCCCCCCccCCCHHHHhcccc
Q 012534 397 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFE 450 (461)
Q Consensus 397 ~~l~~E~~~~~~~~~s~d~~egv~afl~~K~r~P~w~~~~~~~v~~~~v~~~f~ 450 (461)
+|+++|+++..+++.++||.|||+|.|+||++.|+|+|++++||+++.|++||+
T Consensus 65 e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 65 ECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999995
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.77 E-value=1.4e-18 Score=160.90 Aligned_cols=142 Identities=15% Similarity=0.015 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHH
Q 012534 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF 173 (461)
Q Consensus 94 ~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (461)
-.+.+|.++++.+++|+++++|||++ ||.|+|+.....
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~~------------------------------------- 59 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASEV------------------------------------- 59 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHHH-------------------------------------
Confidence 35789999999999999999999986 688888765321
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHH--------HHhcCCC-
Q 012534 174 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY--------IAAKGPG- 244 (461)
Q Consensus 174 ~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~--------~L~rlvG- 244 (461)
...++..+.+++|||||+|||.|.|||+.|+++||++++++.+.|+.+.+..+..+...... .+++..|
T Consensus 60 --~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~ 137 (177)
T cd07014 60 --IRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHS 137 (177)
T ss_pred --HHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 12345567789999999999999999999999999999999999999987766433222222 4455555
Q ss_pred -chHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534 245 -GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 281 (461)
Q Consensus 245 -~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~ 281 (461)
.. ..++++..|..++ |++|++.||||++.+.+++.
T Consensus 138 ~~~-~~~~~l~~g~~~~-a~~A~~~GLVD~v~~~~e~~ 173 (177)
T cd07014 138 TPE-QQIDKIAQGGVWT-GQDAKANGLVDSLGSFDDAV 173 (177)
T ss_pred CHH-HhHHHhcCcCeEe-HHHHHHcCCcccCCCHHHHH
Confidence 54 6788999999999 99999999999999876654
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.76 E-value=6.8e-18 Score=157.62 Aligned_cols=145 Identities=12% Similarity=0.014 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-ecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 78 ~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVlt-g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
++|.++ ..++..+...+.+.|+.+.+|+ ++.|+|. .+ -|+++..-.
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS------pGG~v~~~~--------------------- 48 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDT------PGGLLDSTR--------------------- 48 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC------CCCCHHHHH---------------------
Confidence 456665 3466778889999999998765 7877775 33 133333211
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeC---CccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCc
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV 233 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavn---G~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~ 233 (461)
.++..|..+|||||++|+ |+|.|||+.|+++||++|++++++|+++++..|..+..
T Consensus 49 ---------------------~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~ 107 (187)
T cd07020 49 ---------------------EIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGG 107 (187)
T ss_pred ---------------------HHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCc
Confidence 234456789999999999 99999999999999999999999999999985554432
Q ss_pred --------------hHHHHHhcCCCc--hHHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534 234 --------------GFSYIAAKGPGG--GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 278 (461)
Q Consensus 234 --------------G~~~~L~rlvG~--~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~ 278 (461)
+....+++..|. . .+++++++|+.|+ |+||+++||||+++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~G~~~~-~a~~~l~~g~~~~-a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 108 SDPVMEKKILNDAVAYIRSLAELRGRNAE-WAEKAVRESLSLT-AEEALKLGVIDLIAADL 166 (187)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHcCCeec-HHHHHHcCCcccccCCH
Confidence 245578888887 4 7899999999999 99999999999999875
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.62 E-value=1.8e-15 Score=143.89 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=81.4
Q ss_pred EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCC
Q 012534 77 VAVITLDRP--KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKC 154 (461)
Q Consensus 77 V~~ItLnrP--~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (461)
|++|.++-| +..+..+..++.+|.++|+.+..||++++|||+ .||+|+|+..+..
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~~------------------ 58 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASEV------------------ 58 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHHH------------------
Confidence 555555543 222344556789999999999999999999996 7999999977532
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEe
Q 012534 155 GDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 221 (461)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~ 221 (461)
. ++.+..+..++|||||+++|+|.|+|+.|+++||++++++.+.|+
T Consensus 59 -----------------~----~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g 104 (211)
T cd07019 59 -----------------I----RAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG 104 (211)
T ss_pred -----------------H----HHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence 1 223456788999999999999999999999999999999998876
No 96
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.50 E-value=7.2e-14 Score=151.28 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=120.6
Q ss_pred cCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEec--CCCccccCCChhhHHHHhhhcCCCCCCCC
Q 012534 74 PNGVAVITLDRPK--ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGMDIKGVVAEIQKDRNTPLVPK 149 (461)
Q Consensus 74 ~~~V~~ItLnrP~--~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~--G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 149 (461)
++.|++|.++.+= ..|..+....+.+.+.|+.+..|++|++|||+-. |+.+||+ ..+
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e~i--------------- 367 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----EII--------------- 367 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----HHH---------------
Confidence 5789999999763 2344444456788899999999999999999953 3234443 111
Q ss_pred CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceE------ecc
Q 012534 150 VPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL------AMP 223 (461)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f------~~p 223 (461)
++.+.++...+||||+.++|+|.+||+.++++||.++|++.+.+ +++
T Consensus 368 ---------------------------~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~ 420 (584)
T TIGR00705 368 ---------------------------RRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVL 420 (584)
T ss_pred ---------------------------HHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEc
Confidence 12334466778999999999999999999999999999999876 665
Q ss_pred c------cccCCCCCchHHHHHhc----------------------------CCCchHH-----HHHHhhcCCCCCcHHH
Q 012534 224 E------NGIGLFPDVGFSYIAAK----------------------------GPGGGSV-----GAYLGMTGKRISTPSD 264 (461)
Q Consensus 224 e------~~lGl~P~~G~~~~L~r----------------------------lvG~~~~-----a~~l~LtG~~i~~A~e 264 (461)
. .++|+.|+...+..+.. .++.. + ..+.+.+|+.++ |+|
T Consensus 421 ~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~-R~l~~e~v~~ia~Grv~t-g~e 498 (584)
T TIGR00705 421 PTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAG-RNLTPTQVDKVAQGRVWT-GED 498 (584)
T ss_pred cCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHhCCCcC-HHH
Confidence 3 58999988776655443 34433 4 678889999999 999
Q ss_pred HHHcCccceecCCCChH
Q 012534 265 ALFAGLGTDYVPSGNLG 281 (461)
Q Consensus 265 A~~~GLv~~vv~~~~l~ 281 (461)
|+++||||++..-++..
T Consensus 499 A~~~GLVD~ig~~~~Ai 515 (584)
T TIGR00705 499 AVSNGLVDALGGLDEAV 515 (584)
T ss_pred HHHcCCcccCCCHHHHH
Confidence 99999999996443333
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.47 E-value=5.9e-13 Score=126.98 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=74.2
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhh
Q 012534 83 DRPKALNA-MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEIS 161 (461)
Q Consensus 83 nrP~~~Na-l~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (461)
++|...|+ ++..++.+|.++|+.++.|+++++|||+. +|.|+++.....
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~~~------------------------- 62 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGVFE------------------------- 62 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHHHH-------------------------
Confidence 55655565 45789999999999999999999999975 455666543211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEecc
Q 012534 162 TQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 223 (461)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~p 223 (461)
+...+..+.. +|||||+++|+|.|||+.|+++||++++++.+.|+..
T Consensus 63 --------------l~~~l~~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 63 --------------LADAIRAARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred --------------HHHHHHHHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 1122333444 6999999999999999999999999999999987544
No 98
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.46 E-value=6.6e-13 Score=120.77 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHH
Q 012534 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMI 170 (461)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (461)
++..++.+|.+.|+.++.|+.+++|+|.. .|.|+|+....
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~~~----------------------------------- 47 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDAGM----------------------------------- 47 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHHHH-----------------------------------
Confidence 55688999999999999999999999975 35677665432
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHH-------------H
Q 012534 171 EVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS-------------Y 237 (461)
Q Consensus 171 ~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~-------------~ 237 (461)
.+...|..++||||+.++|.|.++|+.|+++||.|++.+++.|++..+..+.....+-. .
T Consensus 48 -------~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (161)
T cd00394 48 -------NIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIA 120 (161)
T ss_pred -------HHHHHHHHhCCCEEEEECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHH
Confidence 23335667889999999999999999999999999999999999988876553321000 0
Q ss_pred HHhc------CCCchHHHHHHhhcCCCCCcHHHHHHcCcccee
Q 012534 238 IAAK------GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 274 (461)
Q Consensus 238 ~L~r------lvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~v 274 (461)
.+.. -+... ...+++..|..++ |+||+++||||++
T Consensus 121 ~~~~~v~~~r~~~~~-~~~~~~~~~~~~~-a~eA~~~GLvD~i 161 (161)
T cd00394 121 RFISLVAENRGQTTE-KLEEDIEKDLVLT-AQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHHHhcCCCHH-HHHHHhcCCcEEc-HHHHHHcCCcCcC
Confidence 1111 11222 3567788899999 9999999999975
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.41 E-value=1.4e-12 Score=118.57 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=76.8
Q ss_pred HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCch---------------HHHHHhcCC
Q 012534 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG---------------FSYIAAKGP 243 (461)
Q Consensus 179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G---------------~~~~L~rlv 243 (461)
+...|..++||||+.++|.|.|+|+.|+++||+|+++++++|+++....|..+... ....+.+..
T Consensus 50 i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 129 (160)
T cd07016 50 IYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKT 129 (160)
T ss_pred HHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567788999999999999999999999999999999999999877766544432 223367777
Q ss_pred Cch-HHHHHHhhcCCCCCcHHHHHHcCcccee
Q 012534 244 GGG-SVGAYLGMTGKRISTPSDALFAGLGTDY 274 (461)
Q Consensus 244 G~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~v 274 (461)
|.. ....+++.++..++ |+||+++||||++
T Consensus 130 g~~~~~i~~~~~~~~~l~-a~eA~~~GliD~v 160 (160)
T cd07016 130 GLSEEEISALMDAETWLT-AQEAVELGFADEI 160 (160)
T ss_pred CCCHHHHHHHHhCCeECc-HHHHHHcCCCCcC
Confidence 842 26677777777899 9999999999975
No 100
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.38 E-value=4.7e-12 Score=120.18 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=78.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
|++|.++.+=... ...++.+|.++|+.++.|+++++|||++ +|.|+|+.....
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~~-------------------- 54 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASEE-------------------- 54 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHHH--------------------
Confidence 4555555431000 3688999999999999999999999987 467888865321
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
+++.+..+..++|||||+++|+|.|+|+.|+++||++++++.+.|+.
T Consensus 55 -------------------i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 55 -------------------IYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred -------------------HHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 12345567788999999999999999999999999999999998753
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.28 E-value=5.7e-11 Score=112.75 Aligned_cols=138 Identities=16% Similarity=0.122 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHH
Q 012534 96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTA 175 (461)
Q Consensus 96 ~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (461)
..+|.++|+.+.+|+++++|||++. |.|+|+.....
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~~~~--------------------------------------- 50 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVASEE--------------------------------------- 50 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHHHHH---------------------------------------
Confidence 5789999999999999999999864 66777654321
Q ss_pred HHHHHHHHhhCC--CcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc------------cCCCCC---------
Q 012534 176 EYSLICKISEYK--KPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGLFPD--------- 232 (461)
Q Consensus 176 ~~~~~~~l~~~~--kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~------------lGl~P~--------- 232 (461)
+...|..++ |||||+++|.|.|+|+.|+++||.+++++++.|+..-+. +|+-+.
T Consensus 51 ---l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~ 127 (207)
T TIGR00706 51 ---IYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD 127 (207)
T ss_pred ---HHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence 223455555 999999999999999999999999999999876653322 333210
Q ss_pred ---c--hHH----H------------H---HhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534 233 ---V--GFS----Y------------I---AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 281 (461)
Q Consensus 233 ---~--G~~----~------------~---L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~ 281 (461)
. ..+ . + ..+--|......+=++.|+.++ +++|++.||||++...+++.
T Consensus 128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~-~~~A~~~gLvD~i~~~~~~~ 199 (207)
T TIGR00706 128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFT-GRQALKLRLVDKLGTEDDAL 199 (207)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCccc-HHHHHHcCCCcccCCHHHHH
Confidence 0 000 0 0 0111122111122346789998 99999999999998765554
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.18 E-value=3.4e-10 Score=104.80 Aligned_cols=142 Identities=16% Similarity=0.181 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCc
Q 012534 78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDV 157 (461)
Q Consensus 78 ~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (461)
.+|.++. .+++.+...|.+.|+.+.+++ ++.|+|.=.. -|+++...
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~ins-----pGG~v~~~----------------------- 47 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDIDT-----PGGRVDSA----------------------- 47 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEEC-----cCCCHHHH-----------------------
Confidence 4455543 466788889999999999886 6666664221 22333322
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchH--
Q 012534 158 KEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF-- 235 (461)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~-- 235 (461)
..+...|..+++|||+.|+|.|.++|+.|+++||++++++++.|+.+.+- +..|+
T Consensus 48 -------------------~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~ 104 (178)
T cd07021 48 -------------------LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGA 104 (178)
T ss_pred -------------------HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccc
Confidence 23455688899999999999999999999999999999999999998554 22222
Q ss_pred ------HHH------HhcCCCchH-HHHHHhhcC-------------CCCCcHHHHHHcCccceecCC
Q 012534 236 ------SYI------AAKGPGGGS-VGAYLGMTG-------------KRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 236 ------~~~------L~rlvG~~~-~a~~l~LtG-------------~~i~~A~eA~~~GLv~~vv~~ 277 (461)
+.. +.+.-|+.. .+..|+--. -.++ ++||++.|++|.++++
T Consensus 105 ~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lt-a~eA~~~g~~d~ia~~ 171 (178)
T cd07021 105 ADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLT-ADEALKVGYAEGIAGS 171 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeC-HHHHHHhCCeEEEECC
Confidence 111 232334432 334444333 2698 9999999999999863
No 103
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.12 E-value=4.1e-10 Score=108.06 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHH
Q 012534 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM 169 (461)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (461)
.-+..++.+|.+.|+++..|+.|++|||+..+ ..| ++.++.++..
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s-~gg-~~~~~~el~~--------------------------------- 69 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDG-LSG-GLAKLEELRQ--------------------------------- 69 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCC-CCC-CHHHHHHHHH---------------------------------
Confidence 34567789999999999999999999999987 455 7777766543
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc
Q 012534 170 IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE 224 (461)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe 224 (461)
.+..+...+|||||.++| |.+||+.|+++||.+++.+.+.|+..-
T Consensus 70 ---------~i~~~~~~~kpVia~~~~-~~sggy~lasaad~I~a~p~~~vg~iG 114 (222)
T cd07018 70 ---------ALERFRASGKPVIAYADG-YSQGQYYLASAADEIYLNPSGSVELTG 114 (222)
T ss_pred ---------HHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCEEEECCCceEEeec
Confidence 233455679999999998 889999999999999999999988853
No 104
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.70 E-value=6.9e-09 Score=103.68 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=141.4
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534 76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG 155 (461)
Q Consensus 76 ~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (461)
++..+.++ |++ |..|.++..+|...|+.++.+..+++.++|+.....|+||.|..++.-....
T Consensus 66 ~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~--------------- 128 (380)
T KOG1683|consen 66 GFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHF--------------- 128 (380)
T ss_pred ccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccc---------------
Confidence 78888888 776 9999999999999999999999889999999877899999999998753211
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhh--hHhhhcCCeEEEcC--CceEeccccccCCCC
Q 012534 156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFG--IGISGHGRYRIVTE--KTLLAMPENGIGLFP 231 (461)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG--~~LalacD~ria~e--~a~f~~pe~~lGl~P 231 (461)
....++.++.+++...++++.|+.+++||.+--|| |-++.+|+|++... .-..+..+...|+..
T Consensus 129 ------------fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~ 196 (380)
T KOG1683|consen 129 ------------FSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGA 196 (380)
T ss_pred ------------cCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCC
Confidence 11237778889999999999999999999999888 99999999999984 444467888888543
Q ss_pred CchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 232 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 232 ~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
+..-.-.+....|.+ .+-.-+--|.-++ -.||++-|+++.+.|.
T Consensus 197 ~p~~iD~~~t~fGf~-~g~~~L~d~~gfd-v~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 197 DPWLIDSLITKFGFR-VGERALADGVGFD-VAEALAVGLGDEIGPR 240 (380)
T ss_pred CHHHHHHHHHhcCcc-ccHHHHhhccCcc-HHHHHhhccchhccch
Confidence 343444455566877 7777778889999 8999999999999984
No 105
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.49 E-value=3.1e-06 Score=77.90 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHH
Q 012534 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM 169 (461)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (461)
.+++.+..-|.+.++.+++| .++.|+|.=. |-|+++....
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~~~---------------------------------- 48 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAAG---------------------------------- 48 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHHHH----------------------------------
Confidence 36677888899999999876 4677777422 2233333221
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeC---CccchhhhHhhhcCCeEEEcCCceEeccccccCCCCC----c---h-HHHH
Q 012534 170 IEVFTAEYSLICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD----V---G-FSYI 238 (461)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~kPvIAavn---G~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~----~---G-~~~~ 238 (461)
.++..|...++||++.|+ |.|..+|.-|+++||.+++.+++.++...+-.|..+. . - -+..
T Consensus 49 --------~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~ 120 (172)
T cd07015 49 --------NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYF 120 (172)
T ss_pred --------HHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHH
Confidence 233456678999999999 9999999999999999999999999987775433220 0 0 0111
Q ss_pred ------HhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 239 ------AAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 239 ------L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
+.+.-|+. ..+..++-....++ |+||+++|++|.++..
T Consensus 121 ~~~~r~~A~~~Gr~~~~a~~~v~~~~~lt-a~EA~~~G~iD~ia~~ 165 (172)
T cd07015 121 IAYIKSLAQESGRNATIAEEFITKDLSLT-PEEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHhhcCcC-HHHHHHcCCceeeeCC
Confidence 12222321 25566677778899 9999999999999964
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.42 E-value=2.2e-06 Score=78.30 Aligned_cols=136 Identities=14% Similarity=0.069 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHH
Q 012534 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMI 170 (461)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (461)
++..+..++.+.|..++.++..+.|+|.=. |.|+++..-
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~~~------------------------------------ 47 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVFAG------------------------------------ 47 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHHHH------------------------------------
Confidence 467889999999999998877676666422 122332221
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHHH-----------
Q 012534 171 EVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY----------- 237 (461)
Q Consensus 171 ~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~~----------- 237 (461)
..++..|..+++|+++.+.|.|.++|.-|+++|| .|++.++++|.+....-|......-..
T Consensus 48 ------~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~ 121 (162)
T cd07013 48 ------MAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEG 121 (162)
T ss_pred ------HHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHH
Confidence 2344456778899999999999999999999999 688888888776443222111000000
Q ss_pred ----HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCcccee
Q 012534 238 ----IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDY 274 (461)
Q Consensus 238 ----~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~v 274 (461)
.+.+.-|.. ....+++-.+.-++ |+||+++||||++
T Consensus 122 ~~~~~~a~~tg~~~~~i~~~~~~~~~~s-a~eA~~~GliD~i 162 (162)
T cd07013 122 NLVSAYAHKTGQSEEELHADLERDTWLS-AREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHHHhCcCHHHHHHHHcCCcccc-HHHHHHcCCCCcC
Confidence 112222321 13344555556668 9999999999975
No 107
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.38 E-value=5.3e-05 Score=74.01 Aligned_cols=139 Identities=18% Similarity=0.119 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.-+++++-.+...+.++.+.+.. +-+|-|.-.+ +++. |.+-.+-
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtp-Ga~~-g~~aE~~--------------------------------- 119 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTA-GAYP-GVGAEER--------------------------------- 119 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CcCC-CHhHHhc---------------------------------
Confidence 46788999999999999887754 4455554332 3443 3321100
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 247 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~ 247 (461)
.....+...+..+....+|+|++|-|.|.|||......||+++|.+++.|+. +.|.+.....+... ....
T Consensus 120 ---G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~-~~a~ 189 (256)
T PRK12319 120 ---GQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDG-SRAT 189 (256)
T ss_pred ---cHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCc-ccHH
Confidence 0233445566778889999999999999999998889999999999988765 22333333332221 1111
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 248 VGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
.+.+.+ .++ +.++.+.|+||+|+|.
T Consensus 190 ~aa~~~----~~~-a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 190 EAAELM----KIT-AGELLEMGVVDKVIPE 214 (256)
T ss_pred HHHHHc----CCC-HHHHHHCCCCcEecCC
Confidence 333433 678 9999999999999974
No 108
>PRK10949 protease 4; Provisional
Probab=98.38 E-value=6e-06 Score=90.18 Aligned_cols=164 Identities=17% Similarity=0.144 Sum_probs=103.9
Q ss_pred cCcEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCC
Q 012534 74 PNGVAVITLDRP-----KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (461)
Q Consensus 74 ~~~V~~ItLnrP-----~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 148 (461)
.+.|++|.++.+ ...+.++. +.+.+.|+.+..|++||+|||+=..| |+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a--------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA--------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH---------------
Confidence 467888888642 22234544 46778899999999999999986543 221111
Q ss_pred CCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccc----
Q 012534 149 KVPLKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE---- 224 (461)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe---- 224 (461)
-..+++.+.+++...|||||.+.|.|.-||..++++||.++|.+.+..+---
T Consensus 382 ------------------------se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~ 437 (618)
T PRK10949 382 ------------------------SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGV 437 (618)
T ss_pred ------------------------HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEE
Confidence 1112333444566789999999999999999999999999999876433211
Q ss_pred --------cccCCCCCchHHH-----------------------------HH-----hcCCCchHHHHHHhhcCCCCCcH
Q 012534 225 --------NGIGLFPDVGFSY-----------------------------IA-----AKGPGGGSVGAYLGMTGKRISTP 262 (461)
Q Consensus 225 --------~~lGl~P~~G~~~-----------------------------~L-----~rlvG~~~~a~~l~LtG~~i~~A 262 (461)
-++|+-++...+- ++ .|-+.. ...+-+..|+.++ +
T Consensus 438 ~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~--~~v~~ia~Grv~t-g 514 (618)
T PRK10949 438 INTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTP--EQIDKIAQGHVWT-G 514 (618)
T ss_pred ccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH--HHHHHHhcCCccc-H
Confidence 1244432211110 11 011111 1123356899999 9
Q ss_pred HHHHHcCccceecCCCChHHHHHHH
Q 012534 263 SDALFAGLGTDYVPSGNLGSLKEAL 287 (461)
Q Consensus 263 ~eA~~~GLv~~vv~~~~l~~~~~al 287 (461)
++|++.||||++-.-+++.+.+.++
T Consensus 515 ~~A~~~GLVD~lG~~~~ai~~a~~~ 539 (618)
T PRK10949 515 QDAKANGLVDSLGDFDDAVAKAAEL 539 (618)
T ss_pred HHHHHcCCCccCCCHHHHHHHHHHH
Confidence 9999999999998655554444443
No 109
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.34 E-value=3.5e-06 Score=79.62 Aligned_cols=136 Identities=14% Similarity=0.062 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhh
Q 012534 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQL 166 (461)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (461)
..++.++...+...|..++.++..+-|.| -+.| +|+..-
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG-------G~v~~g-------------------------------- 78 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG-------GSVTAG-------------------------------- 78 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CcHHHH--------------------------------
Confidence 34778999999999998876543333333 3444 233221
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHH--------
Q 012534 167 SEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFS-------- 236 (461)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~-------- 236 (461)
..++..|...+.|+++.+.|.|.++|..|+++++ .|++.++++|.+....-|. .|-.
T Consensus 79 ----------~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~ 145 (200)
T PRK00277 79 ----------LAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAR 145 (200)
T ss_pred ----------HHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHH
Confidence 1233456677889999999999999999999853 4666666666554332111 1111
Q ss_pred ----------HHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 237 ----------YIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 237 ----------~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
..+...-|.. .....++-.+.-++ |+||+++||||+|+..
T Consensus 146 ~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ls-a~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 146 EILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMS-AEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcccc-HHHHHHcCCccEEeec
Confidence 1122222331 13445555667788 9999999999999964
No 110
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.33 E-value=7.2e-05 Score=74.93 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.-+++++-++...+.++.++... +-+|-|.-. +++++ |.+-.+..
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDT-pGA~~-G~~AE~~G-------------------------------- 176 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDT-PGAWA-GVKAEKLG-------------------------------- 176 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCc-CHHHHHHh--------------------------------
Confidence 46788999999999999888754 444444333 23554 43222111
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 247 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~ 247 (461)
....+...+..+....+|+|++|-|.|.|||.-....||+++|.+++.|+. +.|.++++..+... +
T Consensus 177 ----~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~----~ 242 (322)
T CHL00198 177 ----QGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDS----K 242 (322)
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcch----h
Confidence 223334455667889999999999999888876666799999999998864 33444444433322 2
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCccceecC
Q 012534 248 VGAYLGMTGKRISTPSDALFAGLGTDYVP 276 (461)
Q Consensus 248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~ 276 (461)
++.+. -..-+++ |++.++.|+||+|+|
T Consensus 243 ~a~~a-A~~~~it-a~dL~~~giiD~ii~ 269 (322)
T CHL00198 243 KSLDA-AEALKIT-SEDLKVLGIIDEIIP 269 (322)
T ss_pred hHHHH-HHHcCCC-HHHHHhCCCCeEecc
Confidence 44443 3445798 999999999999997
No 111
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.24 E-value=0.00012 Score=73.36 Aligned_cols=139 Identities=13% Similarity=0.040 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.-+++++-.+...+.++.++.-. +-+|-|.-.. ++++ |.+..+..
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDTp-Ga~~-g~~aE~~G-------------------------------- 173 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDTP-GAYP-GIGAEERG-------------------------------- 173 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CCCC-CHHHHHHH--------------------------------
Confidence 46788999999999998888753 4445554332 3433 43322211
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 247 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~ 247 (461)
....+...+..+....+|+|++|-|.|.|||......||++++.+++.++. +.|.++.+..+... .
T Consensus 174 ----~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~-~--- 239 (316)
T TIGR00513 174 ----QSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDA-S--- 239 (316)
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccch-h---
Confidence 223344566678889999999999999888776555799999999988764 23434333333221 1
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 248 VGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
++.+..- -..++ |.++++.|+||.|+|.
T Consensus 240 ~a~~aae-~~~~t-a~~l~~~G~iD~II~e 267 (316)
T TIGR00513 240 KAPKAAE-AMKIT-APDLKELGLIDSIIPE 267 (316)
T ss_pred hHHHHHH-HccCC-HHHHHHCCCCeEeccC
Confidence 2322222 26788 9999999999999973
No 112
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.23 E-value=0.00019 Score=73.83 Aligned_cols=138 Identities=15% Similarity=0.101 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE 168 (461)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (461)
.+++++-++...+.++.++... +=+|-|.-.. +++ .|.+-.+..
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTp-GA~-pG~~AEe~G--------------------------------- 243 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTP-GAY-AGIKAEELG--------------------------------- 243 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcC-CCHHHHHHh---------------------------------
Confidence 5688999999999999888754 4444444332 233 343333211
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHH
Q 012534 169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 248 (461)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~ 248 (461)
....+...+..+..+.+|+|++|-|.+.|||.....+||+++|.+++.++. +.|.+.++..+....-.. .
T Consensus 244 ---qa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~-e 313 (431)
T PLN03230 244 ---QGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAP-K 313 (431)
T ss_pred ---HHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchH-H
Confidence 223344566778899999999999999666655555789999999987654 234444444443332111 3
Q ss_pred HHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 249 GAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 249 a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
+.+ .-.++ |.++++.|+||+|+|.
T Consensus 314 AAe----alkit-A~dL~~~GiID~II~E 337 (431)
T PLN03230 314 AAE----ALRIT-AAELVKLGVVDEIVPE 337 (431)
T ss_pred HHH----HcCCC-HHHHHhCCCCeEeccC
Confidence 333 33899 9999999999999973
No 113
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.16 E-value=0.00028 Score=70.81 Aligned_cols=139 Identities=15% Similarity=0.086 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.-+++++-.+...+.++.++.-. +-+|-|.-.. ++++ |.+-.+-
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f~-lPIVtlvDTp-Ga~~-G~~aE~~--------------------------------- 172 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKFG-LPIITFIDTP-GAYP-GIGAEER--------------------------------- 172 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CCCC-CHHHHhc---------------------------------
Confidence 45688999999999988887753 4555554432 3443 4322210
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 247 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~ 247 (461)
.....+...+..+....+|+|++|-|.|.|||.-....||+++|.+++.|+ ++++-|+...|-+-. .
T Consensus 173 ---G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~---~ 239 (319)
T PRK05724 173 ---GQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDA---S 239 (319)
T ss_pred ---cHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCc---h
Confidence 023444556777889999999999999988887666679999999888775 333344444443322 1
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 248 VGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
++.+..- ...++ +.++++.|+||+|+|.
T Consensus 240 ~a~~aae-~~~it-a~~l~~~g~iD~II~E 267 (319)
T PRK05724 240 KAPEAAE-AMKIT-AQDLKELGIIDEIIPE 267 (319)
T ss_pred hHHHHHH-HcCCC-HHHHHHCCCceEeccC
Confidence 3443333 55688 9999999999999973
No 114
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.14 E-value=1.6e-05 Score=73.19 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534 91 MNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE 168 (461)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (461)
++.++..++...|..+..++..+.|+| .+.| +|+..-.
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG-------G~v~~~~--------------------------------- 57 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPG-------GSVTAGL--------------------------------- 57 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECCC-------CCHHHHH---------------------------------
Confidence 567889999999999988765555554 3444 2332211
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchH-----------
Q 012534 169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGF----------- 235 (461)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~----------- 235 (461)
.++..|...+.|+++.+.|.|.++|.-++++|| .|++.+++.|.+.+...+..-...-
T Consensus 58 ---------~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~ 128 (171)
T cd07017 58 ---------AIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRL 128 (171)
T ss_pred ---------HHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHH
Confidence 233446667899999999999999999999999 7999999999888776554322100
Q ss_pred ----HHHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCcccee
Q 012534 236 ----SYIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDY 274 (461)
Q Consensus 236 ----~~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~v 274 (461)
...+...-|.. .....++-.+.-++ |+||+++||||+|
T Consensus 129 ~~~~~~~~~~~tg~~~~~i~~~~~~~~~lt-a~EA~e~GiiD~V 171 (171)
T cd07017 129 RRRLNEILAKHTGQPLEKIEKDTDRDRYMS-AEEAKEYGLIDKI 171 (171)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhhCCcccc-HHHHHHcCCCccC
Confidence 00112222332 14455555777888 9999999999975
No 115
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.14 E-value=2.9e-05 Score=73.73 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.++..+..++.+.|..++..+..+.|.| .+.| +++..-
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~~g--------------------------------- 82 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYINSPG-------GSVTAG--------------------------------- 82 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC-------CcHHHH---------------------------------
Confidence 4788999999999999987543343333 4444 333221
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEecccccc-CCCCCchHH--------
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGI-GLFPDVGFS-------- 236 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~l-Gl~P~~G~~-------- 236 (461)
..++..|..++.|+++.+.|.|.+.|.-|+++|| .|++.+++.|.+..... |. ..|-.
T Consensus 83 ---------~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~ 151 (207)
T PRK12553 83 ---------DAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAR 151 (207)
T ss_pred ---------HHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHH
Confidence 1244456778889999999999999999999999 59999999998876543 21 11211
Q ss_pred ----------HHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 237 ----------YIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 237 ----------~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
..+...-|.. ....+++-.+.-++ |+||+++||||++++.
T Consensus 152 ~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lt-a~EA~e~GliD~I~~~ 202 (207)
T PRK12553 152 EILRMRERLERILAEHTGQSVEKIRKDTDRDKWLT-AEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccc-HHHHHHcCCccEEcCc
Confidence 1223333432 14455666788898 9999999999999964
No 116
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.14 E-value=5e-05 Score=73.77 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE 168 (461)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (461)
+.++.+...++.++++....+..+- ++|...|+ ++.
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~Id-Lii~TpGG-------~v~------------------------------------ 105 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPID-LIIHTPGG-------LVD------------------------------------ 105 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceE-EEEECCCC-------cHH------------------------------------
Confidence 6789999999999999998876654 44555442 211
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534 169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 235 (461)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~ 235 (461)
...++...|.+.+.|+++.|+.+|+.||.-+|++||-++|++.+.+|--+.++|-.|..+.
T Consensus 106 ------AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 106 ------AAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred ------HHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence 1134555678899999999999999999999999999999999999999999999886543
No 117
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.09 E-value=0.00044 Score=75.35 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=94.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.-+++++-++...+.++.++... +-+|-|.=.. ++++ |.+..+..
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTp-GA~p-G~~AEe~G-------------------------------- 264 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTP-GAYA-DLKSEELG-------------------------------- 264 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CcCC-CchhHHHh--------------------------------
Confidence 45788888999999888887754 4444443332 3443 43333321
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchH
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 247 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~ 247 (461)
....+...+..+....+|+|++|-|.|.|||.-....||+++|.+++.|+. +.|.++++ .|-+-..
T Consensus 265 ----q~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAs-ILwkd~~--- 330 (762)
T PLN03229 265 ----QGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAA-ILWKSAK--- 330 (762)
T ss_pred ----HHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHH-HHhcCcc---
Confidence 223344566678899999999999999988888888899999999887653 23444444 4433322
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 248 VGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 248 ~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
++.+ +-..-.|+ |++.+++|+||+|+|.
T Consensus 331 ~A~e-AAe~lkiT-a~dL~~lGiiD~IIpE 358 (762)
T PLN03229 331 AAPK-AAEKLRIT-AQELCRLQIADGIIPE 358 (762)
T ss_pred cHHH-HHHHcCCC-HHHHHhCCCCeeeccC
Confidence 3333 34456799 9999999999999973
No 118
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.02 E-value=6.2e-05 Score=76.11 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHH
Q 012534 96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVFTA 175 (461)
Q Consensus 96 ~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (461)
.+.+.+.|+.+..|+.+++|+|.=..| |+... -...
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~---------------------------------------as~~ 117 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVV---------------------------------------ASEL 117 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchh---------------------------------------HHHH
Confidence 556666788889999999998863221 11111 1122
Q ss_pred HHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHH------------------
Q 012534 176 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY------------------ 237 (461)
Q Consensus 176 ~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~------------------ 237 (461)
+++.+.++..-. ||++.|+++|+-||..+|++||.+||++.+..|=--+..+ .|......
T Consensus 118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~-~~~~~~l~~k~Gv~~~~~~ag~~k~~ 195 (317)
T COG0616 118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG-APNFEELLEKLGVEKEVITAGEYKDI 195 (317)
T ss_pred HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe-cCCHHHHHHhcCCceeeeeccccccc
Confidence 233444555555 9999999999999999999999999999986654333333 12221111
Q ss_pred ----------------------------HHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534 238 ----------------------------IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 281 (461)
Q Consensus 238 ----------------------------~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~ 281 (461)
.+..--+.......-+.+|+-++ +++|++.||||++...++..
T Consensus 196 ~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~-g~~A~~~gLVDelg~~~~av 266 (317)
T COG0616 196 LSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWT-GQQALELGLVDELGGLDDAV 266 (317)
T ss_pred cCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceec-HHHhhhcCCchhcCCHHHHH
Confidence 00000011112234667899999 99999999999998654443
No 119
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.97 E-value=5.6e-05 Score=70.12 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=67.0
Q ss_pred HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH---------------HHhc
Q 012534 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAK 241 (461)
Q Consensus 179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~---------------~L~r 241 (461)
+...|..++.|+++.+.|.|.+.|.-++++|+. |++.+++.|.+.+...+......-.. .+..
T Consensus 66 i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~ 145 (182)
T PF00574_consen 66 IYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAE 145 (182)
T ss_dssp HHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999999999 89999999999888655432111100 1111
Q ss_pred CCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 242 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 242 lvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
.-|.. ..-.+++-...-++ |+||+++||||+|+..
T Consensus 146 ~tg~~~~~i~~~~~~~~~l~-a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 146 RTGLSKEEIEELMDRDTWLS-AEEALEYGIIDEIIES 181 (182)
T ss_dssp HHTS-HHHHHHHCSSTEEEE-HHHHHHHTSSSEEESS
T ss_pred HhCCcHHHHHHHHhCCcccc-HHHHHHcCCCCEeccC
Confidence 11321 13344444555677 9999999999999853
No 120
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.95 E-value=4.7e-05 Score=76.84 Aligned_cols=99 Identities=13% Similarity=0.004 Sum_probs=67.1
Q ss_pred HHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHH-----------------------
Q 012534 181 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY----------------------- 237 (461)
Q Consensus 181 ~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~----------------------- 237 (461)
.++....||+|+.+++.|.-||..+|++||-+++.+.+.++.-.+-.. .|......
T Consensus 148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 346677899999999999999999999999999999886654433211 12221110
Q ss_pred -------------------HHhcCC--CchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534 238 -------------------IAAKGP--GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 281 (461)
Q Consensus 238 -------------------~L~rlv--G~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~ 281 (461)
.+...+ +++....+-+.+|+.+. |++|++.||||++...+++.
T Consensus 227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~-g~~Al~~GLVD~Ig~~dd~i 290 (330)
T PRK11778 227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWY-GQQALELGLVDEIQTSDDYL 290 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcC-HHHHHHCCCCCcCCCHHHHH
Confidence 000000 11001234456899999 99999999999998766654
No 121
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.94 E-value=0.00013 Score=68.73 Aligned_cols=98 Identities=15% Similarity=-0.015 Sum_probs=65.9
Q ss_pred HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHH---------------HHHhc
Q 012534 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS---------------YIAAK 241 (461)
Q Consensus 179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~---------------~~L~r 241 (461)
++..|...+.||++.+.|.|.+.|.-|+++||- |++.++++|.+....-|+.....-. ..+..
T Consensus 73 I~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~ 152 (197)
T PRK14512 73 IFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAK 152 (197)
T ss_pred HHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566789999999999999999999999985 9999999886654432221111100 01111
Q ss_pred CCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 242 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 242 lvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
.-|.. .....++-...-++ |+||+++||+|+|++.
T Consensus 153 ~tg~~~~~i~~~~~~d~~lt-a~EA~~yGliD~I~~~ 188 (197)
T PRK14512 153 ETGQELDKVEKDTDRDFWLD-SSSAVKYGLVFEVVET 188 (197)
T ss_pred HhCcCHHHHHHhhhcCcccC-HHHHHHcCCccEeecC
Confidence 22321 13344444556788 9999999999999964
No 122
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.85 E-value=0.00086 Score=66.11 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=95.7
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCC
Q 012534 76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD----PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVP 151 (461)
Q Consensus 76 ~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d----~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 151 (461)
.|.++..+.--..-+++...-..+..+++.+.+| ..+-+|.|.-+| ++ .+.+-...
T Consensus 60 ~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-Ga-----RlqEg~~~-------------- 119 (274)
T TIGR03133 60 PVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-GV-----RLQEANAG-------------- 119 (274)
T ss_pred EEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-Cc-----ChhhhHHH--------------
Confidence 3555666655556789888889999999998762 123456665444 23 22221100
Q ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCc--cchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534 152 LKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGL 229 (461)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~--a~GgG~~LalacD~ria~e~a~f~~pe~~lGl 229 (461)
+. .+...+..+..+... .|+|++|-|+ |.||+..++..||++||++++++++.-..
T Consensus 120 -----------------L~-~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~--- 177 (274)
T TIGR03133 120 -----------------LI-AIAEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPE--- 177 (274)
T ss_pred -----------------HH-HHHHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHH---
Confidence 00 111122233344444 9999999999 89999999999999999998877762211
Q ss_pred CCCchHHHHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534 230 FPDVGFSYIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN 279 (461)
Q Consensus 230 ~P~~G~~~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~ 279 (461)
..-...|.. -...+-.|.-+.+. +......|++|.+++++.
T Consensus 178 --------VIe~~~G~e~~~~~d~~l~~~~lG-G~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 178 --------VIEQEAGVEEFDSRDRALVWRTTG-GKHRFLSGDADVLVEDDV 219 (274)
T ss_pred --------HHHHhcCCCccCHHHhcccccccc-hHhHhhcccceEEeCCHH
Confidence 112222310 02444455566677 678888999999998643
No 123
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.82 E-value=0.00023 Score=67.11 Aligned_cols=138 Identities=11% Similarity=0.042 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEE--EEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 90 AMNLDMDIKYKSFLDEWESDPRVKCVL--IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vV--ltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.++.++..++...|-.++.++..+-|. |-+.| +|+..-
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG-------G~v~~g--------------------------------- 77 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG-------GSVISG--------------------------------- 77 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------cchhhH---------------------------------
Confidence 389999999999999987544334333 34444 222211
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCCCCchHHH--------
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY-------- 237 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~P~~G~~~-------- 237 (461)
..++..|...+.||...+.|.|.+.|.-|++++| -|++.++++|.+.....|+.-+- .+.
T Consensus 78 ---------~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l 147 (200)
T CHL00028 78 ---------LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEEL 147 (200)
T ss_pred ---------HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHH
Confidence 2344567788999999999999999999999999 69999999988877655521111 111
Q ss_pred ---------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534 238 ---------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 278 (461)
Q Consensus 238 ---------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~ 278 (461)
.+...-|.. ....+++-...-++ |+||+++||||+|+.+.
T Consensus 148 ~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lt-a~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 148 LKLRETITRVYAQRTGKPLWVISEDMERDVFMS-ATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCC-HHHHHHcCCCcEEeecC
Confidence 111122321 13344445556688 99999999999999654
No 124
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.78 E-value=0.00037 Score=65.38 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.++..+...+...|..++.++..+-|+| .+.| +|+..-
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG-------G~v~~g--------------------------------- 73 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG-------GSITAG--------------------------------- 73 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CCHHHH---------------------------------
Confidence 3677888888888888886554444444 3333 343221
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCC--eEEEcCCceEeccccccCCC---CCchH-H-----
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLF---PDVGF-S----- 236 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD--~ria~e~a~f~~pe~~lGl~---P~~G~-~----- 236 (461)
..++..|..++.|+...+.|.|.+.|.-|++++| .|++.++++|.+....-|.. -+..- .
T Consensus 74 ---------~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~ 144 (191)
T TIGR00493 74 ---------LAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILR 144 (191)
T ss_pred ---------HHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHH
Confidence 1233346666777888888999999999999776 59999999998866543321 11110 0
Q ss_pred ------HHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecC
Q 012534 237 ------YIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVP 276 (461)
Q Consensus 237 ------~~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~ 276 (461)
..+.+.-|.. ....+++-.+.-++ |+||+++||||+++.
T Consensus 145 ~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lt-a~EA~~~GliD~ii~ 190 (191)
T TIGR00493 145 LKGLLNDILANHTGQSLEQIEKDTERDFFMS-AEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhhCCccCc-HHHHHHcCCccEEec
Confidence 0122223431 14455666677788 999999999999974
No 125
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.62 E-value=0.00093 Score=66.63 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=93.1
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCC
Q 012534 76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP----RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVP 151 (461)
Q Consensus 76 ~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~----~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 151 (461)
.|.++..+.--..-+++......+..+++.+.++. -+-+|+|.-+| ++ .+.+-..
T Consensus 69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-Ga-----RlqEg~~--------------- 127 (301)
T PRK07189 69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-GV-----RLQEANA--------------- 127 (301)
T ss_pred EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-Cc-----CccchHH---------------
Confidence 36666666655678899999999999999997765 24566665444 22 2222110
Q ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCc--cchhhhHhhhcCCeEEEcCCceEeccccccCC
Q 012534 152 LKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGL 229 (461)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~--a~GgG~~LalacD~ria~e~a~f~~pe~~lGl 229 (461)
.+. .+...+..+..+... +|+|++|-|. |+||+..++.+||++||++++.+++.-..
T Consensus 128 ----------------~L~-~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~--- 186 (301)
T PRK07189 128 ----------------GLA-AIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPE--- 186 (301)
T ss_pred ----------------HHH-HHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHH---
Confidence 000 111122233344555 9999999999 99999999999999999998877762211
Q ss_pred CCCchHHHHHhcCCCc-hHHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534 230 FPDVGFSYIAAKGPGG-GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN 279 (461)
Q Consensus 230 ~P~~G~~~~L~rlvG~-~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~ 279 (461)
..-...|. .-...+..+..+.+. +......|++|.+++++.
T Consensus 187 --------VIe~~~G~e~~d~~d~~~vw~~lG-G~h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 187 --------VIEQEAGVEEFDSRDRALVWRTTG-GKHRYLSGLADALVDDDV 228 (301)
T ss_pred --------HHHHhcCCcccCHHHhcccccccC-cceeeecccceEEeCCHH
Confidence 11111221 002233333333343 344556899999998643
No 126
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.55 E-value=0.0011 Score=62.31 Aligned_cols=139 Identities=13% Similarity=0.023 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhH
Q 012534 90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLS 167 (461)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
.++.++..++...|..++.+...+-|.| -+.| +|+..-
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG-------G~v~~g--------------------------------- 72 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG-------GSVYDG--------------------------------- 72 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC-------cchhhH---------------------------------
Confidence 4888999999999999875443333333 4444 222221
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH--------
Q 012534 168 EMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-------- 237 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~-------- 237 (461)
..++..|..++-||...+.|.|.+.|.-|++++|- |++.++++|.+....-|..-...-..
T Consensus 73 ---------~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~ 143 (196)
T PRK12551 73 ---------LGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILF 143 (196)
T ss_pred ---------HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHH
Confidence 12344567788899999999999999999999985 88999999887665433211110000
Q ss_pred -------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCC
Q 012534 238 -------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 278 (461)
Q Consensus 238 -------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~ 278 (461)
.+.+.-|.. ....+++-...-++ |+||+++||||+|++..
T Consensus 144 ~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ms-a~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 144 LKERLNTELSERTGQPLERIQEDTDRDFFMS-PSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhhcCcCCC-HHHHHHcCCCcEEeccC
Confidence 112222321 12334444455677 99999999999999754
No 127
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.47 E-value=0.0017 Score=61.21 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=68.4
Q ss_pred HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH-----------------HH
Q 012534 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-----------------IA 239 (461)
Q Consensus 179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~L 239 (461)
++..|...+-||...+.|.|.+.|.-|++++|- |++.+++++-+.....|+. +.... .+
T Consensus 77 Iyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iy 154 (201)
T PRK14513 77 IYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIY 154 (201)
T ss_pred HHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999999999995 9999999988866654431 11111 11
Q ss_pred hcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCCCC
Q 012534 240 AKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN 279 (461)
Q Consensus 240 ~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~ 279 (461)
.+.-|.. ..-.+++-...-++ |+||+++||||+|+++..
T Consensus 155 a~~Tg~~~~~I~~~~~rd~~ms-a~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 155 HRHTDLPHEKLLRDMERDYFMS-PEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHHCcCHHHHHHHhccCcccC-HHHHHHcCCCcEEeccCC
Confidence 2222321 02233444445677 999999999999997644
No 128
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.45 E-value=0.0016 Score=62.31 Aligned_cols=98 Identities=9% Similarity=-0.034 Sum_probs=67.0
Q ss_pred HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH---------------HHhc
Q 012534 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAK 241 (461)
Q Consensus 179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~---------------~L~r 241 (461)
++..|...+-||...+.|.|.+.|.-|++++|. |++.++++|.+....-|......-.. .+.+
T Consensus 104 Iyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 183 (221)
T PRK14514 104 IYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIAD 183 (221)
T ss_pred HHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788899999999999999999999996 89999999887665433321111000 1122
Q ss_pred CCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 242 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 242 lvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
.-|.. ....+.+-...-++ |+||+++||||+|+..
T Consensus 184 ~TG~~~e~I~~~~~rd~wmt-A~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 184 HSGTPFDKVWADSDRDYWMT-AQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHCcCHHHHHHHhhcCccCC-HHHHHHcCCccEEeec
Confidence 22431 12334444556687 9999999999999863
No 129
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.31 E-value=0.0087 Score=59.51 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=96.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
|+++..|-.-..-+++....+.+.++++.+... .+-+|.|...| ++ -+.+-..
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSg-Ga-----RmqEg~~-------------------- 174 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASG-GA-----RMQEALL-------------------- 174 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----ccccchh--------------------
Confidence 444444444456789999999999999998765 46677776655 33 1111000
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhH-hhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 235 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~-LalacD~ria~e~a~f~~pe~~lGl~P~~G~ 235 (461)
.+. ........+.++.....|.|+++-|+|.||+.. +++.+|++||.++|.+++--.+
T Consensus 175 -----------sL~-~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr--------- 233 (285)
T TIGR00515 175 -----------SLM-QMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR--------- 233 (285)
T ss_pred -----------HHH-hHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH---------
Confidence 000 111222234456667899999999999999654 5679999999999988773332
Q ss_pred HHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHH
Q 012534 236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKE 285 (461)
Q Consensus 236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ 285 (461)
.+...+|.. +. +.+.+|+-+.+.|+||.||++.++.....
T Consensus 234 --Vie~ti~e~-------lp-e~~q~ae~~~~~G~vD~iv~~~~~r~~l~ 273 (285)
T TIGR00515 234 --VIEQTVREK-------LP-EGFQTSEFLLEHGAIDMIVHRPEMKKTLA 273 (285)
T ss_pred --HHHHHhcCc-------cc-hhcCCHHHHHhCCCCcEEECcHHHHHHHH
Confidence 112222221 12 22433666888999999999988765333
No 130
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.30 E-value=0.011 Score=58.94 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=95.6
Q ss_pred cCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCC
Q 012534 74 PNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPL 152 (461)
Q Consensus 74 ~~~V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (461)
+|.-..|.-|.|. ..-+++....+.+.++++.+... .+-+|.|.-.| ++ .+.+-..
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-Ga-----rmqEgi~---------------- 175 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-GA-----RMQEGLL---------------- 175 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----chhhhhh----------------
Confidence 4433344445554 56889999999999999999876 46677776554 22 2221000
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhH-hhhcCCeEEEcCCceEeccccccCCCC
Q 012534 153 KCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFP 231 (461)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~-LalacD~ria~e~a~f~~pe~~lGl~P 231 (461)
.+. ........+.++.....|.|+++-|+|.||+.. .++.+|++||.++|.+++--.+
T Consensus 176 ---------------sL~-~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr----- 234 (292)
T PRK05654 176 ---------------SLM-QMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR----- 234 (292)
T ss_pred ---------------HHH-hHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----
Confidence 001 112222344456667899999999999999655 5677999999998887763221
Q ss_pred CchHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHH
Q 012534 232 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSL 283 (461)
Q Consensus 232 ~~G~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~ 283 (461)
.+...+|. ++ . +.+.+++-+.+.|+||.||++.++...
T Consensus 235 ------vie~~~~e-----~l--p-e~~~~ae~~~~~G~vD~Vv~~~e~r~~ 272 (292)
T PRK05654 235 ------VIEQTVRE-----KL--P-EGFQRAEFLLEHGAIDMIVHRRELRDT 272 (292)
T ss_pred ------HHHhhhhh-----hh--h-hhhcCHHHHHhCCCCcEEECHHHHHHH
Confidence 11111121 11 1 224337778899999999999887653
No 131
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.24 E-value=0.016 Score=56.21 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=94.2
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCC
Q 012534 75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLK 153 (461)
Q Consensus 75 ~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~-~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (461)
|.-..|.=|.|.. .++.+-...+...+... +++..+-+|.|.=.. .|-.|..-.+...
T Consensus 31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G~----------------- 89 (238)
T TIGR03134 31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLGI----------------- 89 (238)
T ss_pred CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHHH-----------------
Confidence 4333344455543 78888888888888885 455666666665542 3555544333221
Q ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh-cCCeEEEcCCceEeccccccCCCCC
Q 012534 154 CGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG-HGRYRIVTEKTLLAMPENGIGLFPD 232 (461)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal-acD~ria~e~a~f~~pe~~lGl~P~ 232 (461)
..........+......+.|+|+.|-|.++|||+.-.. .+|.++|-+++. ++..+.
T Consensus 90 ----------------~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~-------i~vm~~ 146 (238)
T TIGR03134 90 ----------------NQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAM-------VHVMDL 146 (238)
T ss_pred ----------------HHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcE-------EEecCH
Confidence 11222222333344566699999999999988765543 477776665554 455555
Q ss_pred chHHHHHhcCCCchHHHHHHhhcCC--CCCcHHHHHHcCccceecCCCCh
Q 012534 233 VGFSYIAAKGPGGGSVGAYLGMTGK--RISTPSDALFAGLGTDYVPSGNL 280 (461)
Q Consensus 233 ~G~~~~L~rlvG~~~~a~~l~LtG~--~i~~A~eA~~~GLv~~vv~~~~l 280 (461)
-|++..+-+-. +...++.-+=. ..+ ...+.+.|+||.|+++.+-
T Consensus 147 e~aa~I~~~~~---~~~~e~a~~~~~~a~~-~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 147 ESMARVTKRSV---EELEALAKSSPVFAPG-IENFVKLGGVHALLDVADA 192 (238)
T ss_pred HHHHHHHccCH---hHHHHHHHhhhhhccC-HHHHHhCCCccEEeCCCCc
Confidence 55554444333 24444433322 344 6789999999999986664
No 132
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.12 E-value=0.0003 Score=63.57 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=59.9
Q ss_pred HhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccc------------cCC---------CCCch-----HH
Q 012534 183 ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGL---------FPDVG-----FS 236 (461)
Q Consensus 183 l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~------------lGl---------~P~~G-----~~ 236 (461)
..+..|||||.++|.|..+|+-|+.+||-+++.+.+.++..-+. +|+ .-..+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 34679999999999999999999999999999998866554333 222 11111 00
Q ss_pred H----HHh-----------cCC----CchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534 237 Y----IAA-----------KGP----GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 282 (461)
Q Consensus 237 ~----~L~-----------rlv----G~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~ 282 (461)
- .+. ..| |......+-++.|..++ |++|++.||||++-..+++..
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~-~~~A~~~GLiD~i~~~~~~~~ 145 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFT-AQQALELGLIDEIGTFDEAIA 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEE-HHHHHHTTSSSEETSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhcccc-HHHHHHcCchhhcCCHHHHHH
Confidence 0 000 000 11101122356899998 999999999999986655543
No 133
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.07 E-value=0.015 Score=57.77 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
|+++..+--=..-++....-+.+.++++.+.... +-+|+|..+| ++ -+.+-..
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG-GA-----RmQEg~~-------------------- 187 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG-GA-----RMQEGSL-------------------- 187 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-Cc-----cccccch--------------------
Confidence 5555555444567899999999999999997754 5677776655 22 2221100
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHH-HhhCCCcEEEEeCCccchhhhHh-hhcCCeEEEcCCceEeccccccCCCCCch
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICK-ISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVG 234 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~kPvIAavnG~a~GgG~~L-alacD~ria~e~a~f~~pe~~lGl~P~~G 234 (461)
.+..+.. ....+.. ...-..|.|+++.|+|.||+... ++.||++|+.+++.+++.-.+
T Consensus 188 -----------sL~qmak-~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-------- 247 (296)
T CHL00174 188 -----------SLMQMAK-ISSALYDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-------- 247 (296)
T ss_pred -----------hhhhhHH-HHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH--------
Confidence 0001111 1111122 22456999999999999998776 566999999888876653221
Q ss_pred HHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHHHHHH
Q 012534 235 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEA 286 (461)
Q Consensus 235 ~~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~a 286 (461)
.....+|.. +. +.|-+|+-.++.|+||.+|+..++......
T Consensus 248 ---VIe~t~ge~-------lp-e~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ 288 (296)
T CHL00174 248 ---VIEQTLNKT-------VP-EGSQAAEYLFDKGLFDLIVPRNLLKGVLSE 288 (296)
T ss_pred ---HHHHhcCCc-------CC-cccccHHHHHhCcCceEEEcHHHHHHHHHH
Confidence 111122221 22 224447778899999999998777654333
No 134
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.98 E-value=0.0091 Score=65.39 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHH
Q 012534 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF 173 (461)
Q Consensus 94 ~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (461)
-.+.++.++|+.+..|+.|++|||.-.+. .|+++..+.
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~~-------------------------------------- 113 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHLV-------------------------------------- 113 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHHH--------------------------------------
Confidence 35779999999999999999999986531 133333221
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 174 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 174 ~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
.+++.+..+....|||||..++++ -+|.-||.+||-+++.+.+.+++
T Consensus 114 -ei~~ai~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 114 -EIGSALSEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred -HHHHHHHHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence 122334445667899999998876 68999999999999999877644
No 135
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.014 Score=60.47 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=105.1
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE--ecCCCccccCCChhhHHHHhhhcCCCCCCCCCC
Q 012534 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVP 151 (461)
Q Consensus 74 ~~~V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVlt--g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 151 (461)
++.|..|.++ +++++.+.+.+.+.++.++++.. -+|||. -.|+
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG----------------------------- 69 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPGG----------------------------- 69 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc-----------------------------
Confidence 4567777775 46999999999999999998763 344443 3331
Q ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeC---CccchhhhHhhhcCCeEEEcCCceEeccccccC
Q 012534 152 LKCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG 228 (461)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavn---G~a~GgG~~LalacD~ria~e~a~f~~pe~~lG 228 (461)
....+.++++.|.+.+.||+..|. ++|.-+|.-++++||+..|.+.+.++--..-.+
T Consensus 70 --------------------l~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~ 129 (436)
T COG1030 70 --------------------LLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAG 129 (436)
T ss_pred --------------------hHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecC
Confidence 334455678889999999888875 359999999999999999999999887554322
Q ss_pred C--CCC-ch-HHH------HHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecC
Q 012534 229 L--FPD-VG-FSY------IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVP 276 (461)
Q Consensus 229 l--~P~-~G-~~~------~L~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~ 276 (461)
- .+. .. ... -+.+.-|+. ..|.+++-....++ ++||++.|++|-+..
T Consensus 130 ~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~-a~eA~~~~vid~iA~ 187 (436)
T COG1030 130 GGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLT-AEEALRQGVIDLIAR 187 (436)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCC-hhHHHhcCccccccC
Confidence 2 111 11 111 123333432 15677888889999 999999999998874
No 136
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.81 E-value=0.036 Score=59.70 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=96.7
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcc
Q 012534 80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVK 158 (461)
Q Consensus 80 ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (461)
|.=|+|. ..-+++..-.+...++++.+.+. .+-+|.|.-.+ .|..|.+-..
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~--G~~~g~~~E~------------------------- 370 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVP--GFLPGVNQEY------------------------- 370 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCc--CccccHHHHH-------------------------
Confidence 3345553 34579999999999999988764 46666666553 2655543221
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh----cCCeEEEcCCceEeccccccCCCCCch
Q 012534 159 EISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVG 234 (461)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal----acD~ria~e~a~f~~pe~~lGl~P~~G 234 (461)
...+.....++.++.....|.|+.|-|.+.|||..-+. .+|+++|.+++.++. .++-+
T Consensus 371 -----------~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~ 432 (512)
T TIGR01117 371 -----------GGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAG 432 (512)
T ss_pred -----------HHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHH
Confidence 01334445667778889999999999999888554432 288888877776654 33333
Q ss_pred HHHHH-hcCCC---chHHHHH--Hh-hcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534 235 FSYIA-AKGPG---GGSVGAY--LG-MTGKRISTPSDALFAGLGTDYVPSGNLGS 282 (461)
Q Consensus 235 ~~~~L-~rlvG---~~~~a~~--l~-LtG~~i~~A~eA~~~GLv~~vv~~~~l~~ 282 (461)
+...+ .+.+. ....+.. +. +.-+..+ +..+.+.|+||.|+++.++..
T Consensus 433 a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~g~vD~VI~P~~tR~ 486 (512)
T TIGR01117 433 AANIIFRKDIKEAKDPAATRKQKIAEYREEFAN-PYKAAARGYVDDVIEPKQTRP 486 (512)
T ss_pred HHHHHhhhhcccccCHHHHHHHHHHHHHHhhcC-HHHHHhcCCCCeeEChHHHHH
Confidence 33222 22111 0001111 11 1223446 889999999999999988754
No 137
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.71 E-value=0.028 Score=53.80 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=64.8
Q ss_pred HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCe--EEEcCCceEeccccccCCCCCchHHH-----------------HH
Q 012534 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-----------------IA 239 (461)
Q Consensus 179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~--ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~L 239 (461)
++..|...+-||...+-|.|.+.|.-|++++|- |++.++++|-+.....|.. +-.+- .+
T Consensus 99 IyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iy 176 (222)
T PRK12552 99 ICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEIL 176 (222)
T ss_pred HHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778899999999999999999999995 9999999988766654431 11111 11
Q ss_pred hcCCCch-HHHHHHhhcCCCCCcHHHHHHcCccceecCC
Q 012534 240 AKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 240 ~rlvG~~-~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~ 277 (461)
...-|.. ..-.+++-...-++ |+||+++||||+|+.+
T Consensus 177 a~~TG~~~e~I~~d~~rd~wms-A~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 177 SRNTGQTVEKLSKDTDRMFYLT-PQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHCCCHHHHHHHhcCCCcCC-HHHHHHcCCCcEEecc
Confidence 1112221 01122222334577 9999999999999965
No 138
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.61 E-value=0.022 Score=53.44 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=63.2
Q ss_pred HHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeE--EEcCCceEeccccccCCCCCchHHH----------------HHh
Q 012534 179 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYR--IVTEKTLLAMPENGIGLFPDVGFSY----------------IAA 240 (461)
Q Consensus 179 ~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~r--ia~e~a~f~~pe~~lGl~P~~G~~~----------------~L~ 240 (461)
.+..|...+.||...+-|.|...|.-|++++|.. ++.+++++-..-.. |.+-+...=. .+.
T Consensus 77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777899999999999999999999999874 77777776554443 3221111000 111
Q ss_pred cCCCchHHH--HHHhhcCCCCCcHHHHHHcCccceecCCCCh
Q 012534 241 KGPGGGSVG--AYLGMTGKRISTPSDALFAGLGTDYVPSGNL 280 (461)
Q Consensus 241 rlvG~~~~a--~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l 280 (461)
..-|.. .- ...+-...-++ |+||+++||+|+|+...+.
T Consensus 156 ~~TGq~-~e~i~~d~drd~~ms-a~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 156 EHTGQT-LEKIEKDTDRDTWMS-AEEAKEYGLIDKVIESREA 195 (200)
T ss_pred HHcCCC-HHHHHHhhcccccCC-HHHHHHcCCcceecccccc
Confidence 122322 11 11222344678 9999999999999976543
No 139
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.10 E-value=0.064 Score=57.68 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
|.++..+.--...+++......+..+++.+..+. +-+|.|.-.| ++| + ++.+.....
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~dsg-Ga~--~-r~~eg~~~l------------------ 115 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDSG-GAF--L-RMQEGVESL------------------ 115 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEES-SBC--G-GGGGHHHHH------------------
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecccc-ccc--c-ccchhhhhh------------------
Confidence 4444445555678899999999999999998764 4455554433 221 1 455433211
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEeccccccCCCCCchH
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGF 235 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~pe~~lGl~P~~G~ 235 (461)
. .+...+..+..+.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++.
T Consensus 116 -------------~-~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~------------ 168 (493)
T PF01039_consen 116 -------------M-GMGRIFRAIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA------------ 168 (493)
T ss_dssp -------------H-HHHHHHHHHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS------------
T ss_pred -------------h-hhHHHHHHHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec------------
Confidence 0 12223333445666 9999999999999999999999999999987 776542
Q ss_pred HHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------HHcCccceecCCCC
Q 012534 236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDA-------LFAGLGTDYVPSGN 279 (461)
Q Consensus 236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA-------~~~GLv~~vv~~~~ 279 (461)
|+ ...+ ..+|+.++ .++. ...|++|.++++++
T Consensus 169 --------GP--~vv~-~~~Ge~~~-~~~lgG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 169 --------GP--RVVE-SATGEEVD-SEELGGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp --------TH--HHHH-HHHSSCTS-HHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred --------cc--cccc-cccCcccc-chhhhhhhhhcccCCCceEEEechH
Confidence 21 1112 24467777 5542 46899999998653
No 140
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.10 E-value=0.031 Score=54.87 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred HHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHHHHHHhhcCC
Q 012534 178 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 257 (461)
Q Consensus 178 ~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~~l~LtG~ 257 (461)
.-+..+.++++|+||.|=|---+||+-=...+|.+.|-++++|+. +.|.+.++..|..- +++.+. -...
T Consensus 179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~----~ka~eA-Ae~m 247 (317)
T COG0825 179 RNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA----SKAKEA-AEAM 247 (317)
T ss_pred HHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh----hhhHHH-HHHc
Confidence 344568899999999999987777766666789999999999985 55666666555332 355554 3445
Q ss_pred CCCcHHHHHHcCccceecCC
Q 012534 258 RISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 258 ~i~~A~eA~~~GLv~~vv~~ 277 (461)
.|+ |++.+++||||.|+|.
T Consensus 248 kit-a~dLk~lgiID~II~E 266 (317)
T COG0825 248 KIT-AHDLKELGIIDGIIPE 266 (317)
T ss_pred CCC-HHHHHhCCCcceeccC
Confidence 798 9999999999999973
No 141
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.10 E-value=0.086 Score=57.40 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=69.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
|.++.-+.-=+..+++....+.+.++++.+.+.. +-+|.|.-.| +++-.+ ....+..
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSg-Garl~~-q~e~~~~-------------------- 187 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSG-GANLPR-QAEVFPD-------------------- 187 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcCCcc-cccccch--------------------
Confidence 4444444334568999999999999999988764 5566665444 333211 0000000
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCC-ceEec
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM 222 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~-a~f~~ 222 (461)
...+...+.....+.....|.|++|-|.|.|||..+..+||++|+++. +.+++
T Consensus 188 -------------~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~ 241 (569)
T PLN02820 188 -------------RDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL 241 (569)
T ss_pred -------------HhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence 001112222233455667999999999999999999999999999874 54544
No 142
>PRK10949 protease 4; Provisional
Probab=95.77 E-value=0.13 Score=56.75 Aligned_cols=85 Identities=7% Similarity=0.072 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHH
Q 012534 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMIEVF 173 (461)
Q Consensus 94 ~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (461)
-.+.++.++|+.+..|+.|++|||.-.++. |..+..+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a~~--------------------------------------- 131 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQPSM--------------------------------------- 131 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHHHH---------------------------------------
Confidence 345689999999999999999999876421 2222111
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEec
Q 012534 174 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 222 (461)
Q Consensus 174 ~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~ 222 (461)
..+.+.+..+....|||||..+.++ -+|.-||.+||-+++.+.+.+++
T Consensus 132 ~eI~~ai~~fk~sGKpVvA~~~~~~-s~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 132 QYIGKALREFRDSGKPVYAVGDSYS-QGQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCcc-chhhhhhhhCCEEEECCCceEEE
Confidence 1122334445667899999755554 67999999999999988755443
No 143
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.69 E-value=0.11 Score=56.10 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=82.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
|.++..+--=..-+++....+.+..+++.+.++. +-+|.|.-+| +++ +.+-...
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-Gar-----m~eg~~~------------------- 137 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-GAR-----IQEAVDA------------------- 137 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-CCC-----ccccchh-------------------
Confidence 4444444433567899999999999999998765 4455554443 232 2110000
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCc-eEeccccccCCCCCchH
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LLAMPENGIGLFPDVGF 235 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a-~f~~pe~~lGl~P~~G~ 235 (461)
+..+ ...+... ....-..|.|++|-|.|.||+......|||+|+++++ .+++. |
T Consensus 138 ------------l~~~-~~~~~~~-~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------G 192 (512)
T TIGR01117 138 ------------LKGY-GDIFYRN-TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------G 192 (512)
T ss_pred ------------hhhH-HHHHHHH-HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------C
Confidence 0001 1111111 1223458999999999999998888899999999964 34431 1
Q ss_pred HHHHhcCCCchHHHHHHhhcCCCCCcHHHHH--HcCccceecCCC
Q 012534 236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDAL--FAGLGTDYVPSG 278 (461)
Q Consensus 236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~--~~GLv~~vv~~~ 278 (461)
...+....|.. ++.+.+. +.+.+ .-|++|.+++++
T Consensus 193 P~vv~~~~Ge~-------v~~e~lG-Ga~~h~~~sGv~d~~~~de 229 (512)
T TIGR01117 193 PQVIKTVTGEE-------VTAEQLG-GAMAHNSVSGVAHFIAEDD 229 (512)
T ss_pred hHHHHhhcCcc-------cchhhcc-hHHHhccccceeEEecCCh
Confidence 11112222322 2334444 34443 589999998754
No 144
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.42 E-value=0.59 Score=45.79 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=98.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
|+...++--=-.-+|..-.-+.+..+++.+-.+. +.+|+++.+|+ +-+.|-.-
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSGG------ARMQEg~l-------------------- 176 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASGG------ARMQEGIL-------------------- 176 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCcc------hhHhHHHH--------------------
Confidence 5556665544456788888899999999987764 78999988873 22222110
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchh-hhHhhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGF-GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 235 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~Gg-G~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~ 235 (461)
.++++ ......+.++.....|+|+.+..+..|| -+.+++..|+.||-++|.+|+.-.++
T Consensus 177 -----------SLMQM-aktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------- 236 (294)
T COG0777 177 -----------SLMQM-AKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------- 236 (294)
T ss_pred -----------HHHHH-HHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh--------
Confidence 01111 1223455667888999999999999988 67899999999998888776654331
Q ss_pred HHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChHH
Q 012534 236 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 282 (461)
Q Consensus 236 ~~~L~rlvG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~~ 282 (461)
+-..+| +-+--| +..++-.++.|+||.||+..++..
T Consensus 237 ---IEQTir------e~LPeg--fQ~aEfLlehG~iD~iv~R~elr~ 272 (294)
T COG0777 237 ---IEQTIR------EKLPEG--FQTAEFLLEHGMIDMIVHRDELRT 272 (294)
T ss_pred ---hhhhhc------ccCCcc--hhhHHHHHHcCCceeeecHHHHHH
Confidence 111111 112222 323788899999999999877654
No 145
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=92.72 E-value=0.17 Score=52.82 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=53.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhcCCCcHHHHHHhh---hcCCCCCCCCCC
Q 012534 358 EALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAV---LVDKDQNPKWNP 434 (461)
Q Consensus 358 ~~~~~l~~~sp~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egv~af---l~~K~r~P~w~~ 434 (461)
+.+++++..+|.++..+|+.++... ......+..+......++.++|+.|++.+| + +| +.|.|--
T Consensus 228 ~~~~~i~~~~p~av~~~k~~~~~~~----------~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~-~k-r~~~wa~ 295 (401)
T PLN02157 228 EQLKKLLTDDPSVVESCLEKCAEVA----------HPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEA-GR-RKDTWCI 295 (401)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccc----------CCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhh-cc-cchHHHH
Confidence 4445788899999999999987532 234567777888888999999999999999 6 56 6788865
Q ss_pred CCc
Q 012534 435 ASL 437 (461)
Q Consensus 435 ~~~ 437 (461)
..+
T Consensus 296 ~~~ 298 (401)
T PLN02157 296 TTL 298 (401)
T ss_pred HHH
Confidence 544
No 146
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=91.39 E-value=0.67 Score=49.67 Aligned_cols=102 Identities=16% Similarity=0.046 Sum_probs=67.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGD 156 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (461)
+..+.-+-+.+.-++..-....+..+.+.+.++....+.+..+.| +.+.+-...
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG-------ari~~~v~~------------------- 146 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG-------ARIQEGVPS------------------- 146 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc-------cccccCccc-------------------
Confidence 333333455677888888888899988888876554555555544 222221000
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCc
Q 012534 157 VKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 218 (461)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a 218 (461)
.+.+...+....++... +|.|++|-|.|.|||.-+...||++|+.++.
T Consensus 147 -------------l~g~g~iF~~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 147 -------------LAGYGRIFYRNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred -------------cccchHHHHHHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 00222333333445555 9999999999999999999999999999985
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=90.68 E-value=3.6 Score=45.06 Aligned_cols=146 Identities=12% Similarity=0.129 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE 168 (461)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (461)
-+++.+-.+...+.++..+. -++-+|.|.-.. .|..|.+-..-
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~~---------------------------------- 422 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT--GFMVGSRSEAS---------------------------------- 422 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC--CCCCCHHHHHh----------------------------------
Confidence 46888888888888888876 456777776542 47666544431
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhh----cCCeEEEcCCceEeccccccCCCCCchHHHHHhcC-C
Q 012534 169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P 243 (461)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lal----acD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rl-v 243 (461)
...+...+++.++.....|.|++|=|.|+|+|..-+. ..|++++. |...+|..+.-|+...+.+. +
T Consensus 423 --G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~aw-------p~A~i~vmg~e~aa~il~~~e~ 493 (569)
T PLN02820 423 --GIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMW-------PNARIGVMGGAQAAGVLAQIER 493 (569)
T ss_pred --hHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEEC-------CCCeEEecCHHHHHHHHHHHHh
Confidence 1445556788889999999999999999998765553 44565555 45555665555555544321 1
Q ss_pred ------C----chHH-H-HH-H-hhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534 244 ------G----GGSV-G-AY-L-GMTGKRISTPSDALFAGLGTDYVPSGNLG 281 (461)
Q Consensus 244 ------G----~~~~-a-~~-l-~LtG~~i~~A~eA~~~GLv~~vv~~~~l~ 281 (461)
| .... + ++ + -..-+..+ +..|-..|++|.|+++.+.-
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~aa~~~~vD~VIdP~dTR 544 (569)
T PLN02820 494 ENKKRQGIQWSKEEEEAFKAKTVEAYEREAN-PYYSTARLWDDGVIDPADTR 544 (569)
T ss_pred hhhhhccccCCccHHHHHHHHHHHHHHHhCC-HHHHHHcCCcCcccCHHHHH
Confidence 1 0001 0 01 1 11122445 77888999999999987654
No 148
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=86.53 E-value=3.3 Score=44.64 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=92.7
Q ss_pred cCcEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCC
Q 012534 74 PNGVAVITLDRPKALN-AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPL 152 (461)
Q Consensus 74 ~~~V~~ItLnrP~~~N-al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (461)
.|.-.-|.=|+|.... +++.+-.....+.+...+. -++-+|.|.-. ..|..|-.-..-
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt--pGf~~g~~~E~~------------------ 350 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT--PGFMPGPEAERA------------------ 350 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE--CEB--SHHHHHT------------------
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec--ccccccchhhhc------------------
Confidence 3333334446665322 7999999999999998887 45777777655 246555432210
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcC----CeEEEcCCceEeccccccC
Q 012534 153 KCGDVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG----RYRIVTEKTLLAMPENGIG 228 (461)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~Lalac----D~ria~e~a~f~~pe~~lG 228 (461)
......-+++.++..+..|+|..|=|.+.|||....... |+++|.++++ +|
T Consensus 351 ------------------g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~-------~~ 405 (493)
T PF01039_consen 351 ------------------GIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAE-------IG 405 (493)
T ss_dssp ------------------THHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-E-------EE
T ss_pred ------------------chHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcce-------ee
Confidence 155566678889999999999999999999877444444 5665555555 45
Q ss_pred CCCCchHHHHHhc-CC------Cc--hH-HHHHHhhcCC-CCCcHHHHHHcCccceecCCCChHH
Q 012534 229 LFPDVGFSYIAAK-GP------GG--GS-VGAYLGMTGK-RISTPSDALFAGLGTDYVPSGNLGS 282 (461)
Q Consensus 229 l~P~~G~~~~L~r-lv------G~--~~-~a~~l~LtG~-~i~~A~eA~~~GLv~~vv~~~~l~~ 282 (461)
+.++-|+...+-+ .. |. .. ....+--.-+ ..+ +..+...|++|.++++.+...
T Consensus 406 vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~D~ii~p~~tR~ 469 (493)
T PF01039_consen 406 VMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSS-PYRAASRGYVDDIIDPAETRK 469 (493)
T ss_dssp SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSS-HHHHHHTTSSSEESSGGGHHH
T ss_pred ecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCC-HHHHHhcCCCCCccCHHHHHH
Confidence 5544444333221 10 10 00 0111111111 245 889999999999999887653
No 149
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.26 E-value=5.2 Score=38.92 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHH
Q 012534 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEM 169 (461)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (461)
.++.++.+.+...|-.++.+++-|-|.+.=.+ -|+++..-
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINS-----PGG~vtag----------------------------------- 139 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINS-----PGGSVTAG----------------------------------- 139 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeC-----CCCccchh-----------------------------------
Confidence 47888888888888888776666766664322 23333211
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHHH
Q 012534 170 IEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 249 (461)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a 249 (461)
...+..+.-++-||-...=|.|.+-|.-|..+ .+..-+|++|..++=+.-+.|+.. .......-.+
T Consensus 140 -------lAIYDtMq~ik~~V~Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~--Gqa~Di~i~a 205 (275)
T KOG0840|consen 140 -------LAIYDTMQYIKPDVSTICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAG--GQATDIVIQA 205 (275)
T ss_pred -------hhHHHHHHhhCCCceeeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcC--ccchHHHHHH
Confidence 11223344455565555556666555444432 345667888888876642222221 0000000122
Q ss_pred HHHhh------------cC-------------CCCCcHHHHHHcCccceecCC
Q 012534 250 AYLGM------------TG-------------KRISTPSDALFAGLGTDYVPS 277 (461)
Q Consensus 250 ~~l~L------------tG-------------~~i~~A~eA~~~GLv~~vv~~ 277 (461)
+|++. || +-++ |+||++.||+|.|++.
T Consensus 206 kE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fms-a~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 206 KELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMS-AEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCC-HHHHHHhcchhhhhcC
Confidence 22221 44 3577 9999999999999863
No 150
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=74.03 E-value=6.7 Score=39.53 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHHhcCC---CceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 012534 92 NLDMDIKYKSFLDEWESDP---RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSE 168 (461)
Q Consensus 92 ~~~m~~eL~~~l~~~~~d~---~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (461)
+.....++..+|+.++... .+-+|||. .||+ .+.++..
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~-RGGG------s~eDL~~-------------------------------- 93 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIII-RGGG------SIEDLWA-------------------------------- 93 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEe-cCCC------ChHHhcc--------------------------------
Confidence 3445788889999998664 56777773 2312 2233221
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCc
Q 012534 169 MIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 218 (461)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a 218 (461)
| ....+.++|+.++.|||++| ||-.-- .-.=+.||+|..|+++
T Consensus 94 ----F-N~e~varai~~~~~PvisaI-GHe~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 94 ----F-NDEEVARAIAASPIPVISAI-GHETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred ----c-ChHHHHHHHHhCCCCEEEec-CCCCCc-hHHHHHHHhhCCCHHH
Confidence 1 12457788999999999987 444321 1122666777777654
No 151
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=71.51 E-value=7 Score=41.17 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=24.5
Q ss_pred HHHHHHhhCCCcEEEEeCCccchhhhHhh-hcCCeEEEcCC
Q 012534 178 SLICKISEYKKPYISLMDGVTMGFGIGIS-GHGRYRIVTEK 217 (461)
Q Consensus 178 ~~~~~l~~~~kPvIAavnG~a~GgG~~La-lacD~ria~e~ 217 (461)
.+.++|+.++.|+|++| ||-. =+.|+ +.+|+|-.|++
T Consensus 216 ~vaRAi~~s~iPvISAV-GHEt--D~tL~DfVAD~RApTPT 253 (440)
T COG1570 216 IVARAIAASRIPVISAV-GHET--DFTLADFVADLRAPTPT 253 (440)
T ss_pred HHHHHHHhCCCCeEeec-ccCC--CccHHHhhhhccCCCch
Confidence 46788999999999988 3322 12233 55666666654
No 152
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=70.83 E-value=13 Score=36.86 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCceEEEEEec
Q 012534 100 KSFLDEWESDPRVKCVLIEGS 120 (461)
Q Consensus 100 ~~~l~~~~~d~~vr~vVltg~ 120 (461)
.++|+.+++||..++||+-|.
T Consensus 189 id~L~~fe~Dp~T~~ivmiGE 209 (293)
T COG0074 189 IDALEMFEADPETEAIVMIGE 209 (293)
T ss_pred HHHHHHHhcCccccEEEEEec
Confidence 367888888999999999887
No 153
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=68.76 E-value=9.6 Score=40.35 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcchhhhhhhhHHHH
Q 012534 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVKEISTQNQLSEMI 170 (461)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (461)
-......++..+|+.++..+++.+|||. .|+++ +.++..
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~-RGGGs------~eDL~~---------------------------------- 205 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVG-RGGGS------LEDLWS---------------------------------- 205 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEe-cCCCC------HHHhhh----------------------------------
Confidence 3445578888888888876667777773 33222 222221
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhh-hcCCeEEEcCCc
Q 012534 171 EVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS-GHGRYRIVTEKT 218 (461)
Q Consensus 171 ~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~La-lacD~ria~e~a 218 (461)
|+ ...+.++|+.||.|||++| ||-.- +.|+ +.+|.|..|+.+
T Consensus 206 --Fn-~e~~~rai~~~~~Pvis~i-GHe~D--~ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 206 --FN-DEKVARAIFLSKIPIISAV-GHETD--FTISDFVADLRAPTPSA 248 (432)
T ss_pred --cC-cHHHHHHHHcCCCCEEEec-CcCCC--ccHHHHhhhccCCCcHH
Confidence 11 1357788999999999977 33221 1222 566777776643
No 154
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=61.12 E-value=48 Score=35.88 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=77.9
Q ss_pred EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCC
Q 012534 77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCG 155 (461)
Q Consensus 77 V~~ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (461)
|++ .=|.|. ..-+|+.+-.+.-.+.+ ++.+-.++-.|.|.-. ..|.-|-|-..-.
T Consensus 326 VGi-IANqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~--pGFm~G~~~E~~g-------------------- 381 (526)
T COG4799 326 VGI-IANQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDT--PGFMPGTDQEYGG-------------------- 381 (526)
T ss_pred EEE-EecCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCC--CCCCCChhHHhCh--------------------
Confidence 443 345554 45689999999998888 4554556788888665 4698887654311
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534 156 DVKEISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 235 (461)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~P~~G~ 235 (461)
..+....++.++..+.+|.|..|-|.++|||.-.+..-.+ ..+-.|+.|..++|+.-+-|+
T Consensus 382 ----------------iik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~---~~~~~~AwP~a~iaVMG~egA 442 (526)
T COG4799 382 ----------------IIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKAL---GPDFNYAWPTAEIAVMGPEGA 442 (526)
T ss_pred ----------------HHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccC---CCceeEecCcceeeecCHHHH
Confidence 4555567888999999999999999999998654422211 134455566666665433333
No 155
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=60.09 E-value=26 Score=31.02 Aligned_cols=24 Identities=17% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC
Q 012534 98 KYKSFLDEWESDPRVKCVLIEGSG 121 (461)
Q Consensus 98 eL~~~l~~~~~d~~vr~vVltg~G 121 (461)
.+.+.++.+.+||++++|++.-.|
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~ 64 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG 64 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC
Confidence 457778889999999999998875
No 156
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=58.44 E-value=17 Score=38.39 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=25.6
Q ss_pred HHHHHHHhhCCCcEEEEeCCccchhhhHh-hhcCCeEEEcCCc
Q 012534 177 YSLICKISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKT 218 (461)
Q Consensus 177 ~~~~~~l~~~~kPvIAavnG~a~GgG~~L-alacD~ria~e~a 218 (461)
..+.++|+.|+.|||++| ||-.- ..| =+.||.|..|+++
T Consensus 214 e~v~~ai~~~~~Pvis~I-GHE~D--~tl~D~vAd~ra~TPta 253 (438)
T PRK00286 214 EAVARAIAASRIPVISAV-GHETD--FTIADFVADLRAPTPTA 253 (438)
T ss_pred HHHHHHHHcCCCCEEEec-cCCCC--ccHHHHhhhccCCChHH
Confidence 457788999999999977 33321 112 2566777776643
No 157
>PLN02522 ATP citrate (pro-S)-lyase
Probab=52.00 E-value=36 Score=37.60 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCceEEEEEec-C
Q 012534 99 YKSFLDEWESDPRVKCVLIEGS-G 121 (461)
Q Consensus 99 L~~~l~~~~~d~~vr~vVltg~-G 121 (461)
+.+.|+.+++||++++|++.|. |
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiG 233 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELG 233 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecC
Confidence 4555666777777777777776 5
No 158
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=49.74 E-value=1.1e+02 Score=32.43 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=95.6
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEecCCCccccCCChhhHHHHhhhcCCCCCCCCCCCCCCCcc
Q 012534 80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVPLKCGDVK 158 (461)
Q Consensus 80 ItLnrP~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (461)
|.-|+|+ ..-.|..+.-....+.++...+ ..+-.|.|...+ + |--|.+.....
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~-G-fm~g~~~e~~g----------------------- 406 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNIT-G-FMVGRAAEAGG----------------------- 406 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccC-C-ccccchhhhhc-----------------------
Confidence 4556776 3467777777777777766654 467788888775 3 98888876533
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcEEEEeCCccchhhhH---hhhcCCeEEEcCCceEeccccccCCCCCchH
Q 012534 159 EISTQNQLSEMIEVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG---ISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 235 (461)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~---LalacD~ria~e~a~f~~pe~~lGl~P~~G~ 235 (461)
.......+..+....+.|-|..+-|.++||-.. -++.-||.++-+.|++++--.+ ++
T Consensus 407 -------------IaK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a 466 (536)
T KOG0540|consen 407 -------------IAKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QA 466 (536)
T ss_pred -------------hhhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------ch
Confidence 222333566677888999999999999997655 4466677777777766553321 21
Q ss_pred HHHHhcC-----CCchHHHHHHhhcCCCCCcHHHHHHcCccceecCCCChH
Q 012534 236 SYIAAKG-----PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 281 (461)
Q Consensus 236 ~~~L~rl-----vG~~~~a~~l~LtG~~i~~A~eA~~~GLv~~vv~~~~l~ 281 (461)
.-.+.+. +...+...|.+ |.++. |...|++|.++++.+..
T Consensus 467 ~~Vi~q~~~e~a~~~~~~~~E~f--~npy~----a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 467 ANVIFQITLEKAVALKAPYIEKF--GNPYY----AAARGWDDGIIDPSDTR 511 (536)
T ss_pred hhhhhhhhhhhhhhhcchHHHHh--cCccH----HHHhhccccccChhHhh
Confidence 1122222 11111333433 66666 46789999999987654
No 159
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=43.50 E-value=59 Score=33.02 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=12.2
Q ss_pred hCCCcEEEEeCCccc
Q 012534 185 EYKKPYISLMDGVTM 199 (461)
Q Consensus 185 ~~~kPvIAavnG~a~ 199 (461)
...||||+.+-|..-
T Consensus 250 ~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 250 PIKKPVVSFIAGITA 264 (317)
T ss_pred cCCCcEEEEEecCCC
Confidence 368999999998763
No 160
>smart00250 PLEC Plectin repeat.
Probab=32.55 E-value=35 Score=22.90 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=17.1
Q ss_pred hcCCCCCcHHHHHHcCccce
Q 012534 254 MTGKRISTPSDALFAGLGTD 273 (461)
Q Consensus 254 LtG~~i~~A~eA~~~GLv~~ 273 (461)
.||++++ -.||++.||++.
T Consensus 17 ~t~~~ls-v~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLS-VEEALRRGLIDP 35 (38)
T ss_pred CCCCCcC-HHHHHHcCCCCc
Confidence 3899999 999999999975
No 161
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=31.01 E-value=83 Score=31.41 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=11.3
Q ss_pred CCCcEEEEeCCcc
Q 012534 186 YKKPYISLMDGVT 198 (461)
Q Consensus 186 ~~kPvIAavnG~a 198 (461)
..||+|+..-|..
T Consensus 224 ~~KPVV~lk~Grs 236 (286)
T TIGR01019 224 MSKPVVGFIAGAT 236 (286)
T ss_pred CCCCEEEEEecCC
Confidence 6899999998875
No 162
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=29.91 E-value=1e+02 Score=31.08 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=10.6
Q ss_pred CCcEEEEeCCcc
Q 012534 187 KKPYISLMDGVT 198 (461)
Q Consensus 187 ~kPvIAavnG~a 198 (461)
.||||+..-|..
T Consensus 233 ~KPVV~lk~Grs 244 (300)
T PLN00125 233 EKPVVAFIAGLT 244 (300)
T ss_pred CCCEEEEEecCC
Confidence 899999988875
No 163
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=29.49 E-value=94 Score=31.14 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=11.6
Q ss_pred CCCcEEEEeCCccc
Q 012534 186 YKKPYISLMDGVTM 199 (461)
Q Consensus 186 ~~kPvIAavnG~a~ 199 (461)
..||||+.--|..-
T Consensus 226 ~~KPVV~lk~Grs~ 239 (291)
T PRK05678 226 VTKPVVGYIAGVTA 239 (291)
T ss_pred CCCCEEEEEecCCC
Confidence 48999999999843
No 164
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=27.76 E-value=84 Score=33.41 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=26.4
Q ss_pred HHHhhCCCcEEEEeCCccchhhhHhhhcCCeEEEcCCceEeccccccCCC
Q 012534 181 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF 230 (461)
Q Consensus 181 ~~l~~~~kPvIAavnG~a~GgG~~LalacD~ria~e~a~f~~pe~~lGl~ 230 (461)
++... .||||+..-|..- .|...+...-=-++.++..|.--.-+.|++
T Consensus 225 ~~a~~-~KPVv~~k~Grs~-~g~~aa~sHtgalag~~~~~~a~~~~~Gv~ 272 (447)
T TIGR02717 225 REISK-KKPIVVLKSGTSE-AGAKAASSHTGALAGSDEAYDAAFKQAGVI 272 (447)
T ss_pred HHHcC-CCCEEEEecCCCh-hhhhhhhhccccccChHHHHHHHHHHCCeE
Confidence 34444 8999999999874 344443333233444444444444455543
No 165
>PRK06091 membrane protein FdrA; Validated
Probab=25.12 E-value=1.4e+02 Score=32.61 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.0
Q ss_pred HHHHHHhhCCCcEEEEeCCccc
Q 012534 178 SLICKISEYKKPYISLMDGVTM 199 (461)
Q Consensus 178 ~~~~~l~~~~kPvIAavnG~a~ 199 (461)
+++..++++.||||+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 3444555679999999999654
No 166
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=24.86 E-value=50 Score=34.70 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=39.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EecCCCccccCCChhhHH
Q 012534 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVV 135 (461)
Q Consensus 77 V~~ItLnrP~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~ 135 (461)
|+.|.| +.|+.....+|..++..++++. ++++|| ++++++......++..+.
T Consensus 205 IGyI~I------~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f 258 (406)
T COG0793 205 IGYIRI------PSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLF 258 (406)
T ss_pred EEEEEe------cccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcc
Confidence 888888 4577777888999999999876 888887 566556666666665543
No 167
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=24.80 E-value=1.1e+02 Score=26.44 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--hcCCCceEEEEEecC
Q 012534 77 VAVITLDRPKALNAM--N----------LDMDIKYKSFLDEW--ESDPRVKCVLIEGSG 121 (461)
Q Consensus 77 V~~ItLnrP~~~Nal--~----------~~m~~eL~~~l~~~--~~d~~vr~vVltg~G 121 (461)
+..|+.+-|.|...= + ...+.++.+.+... .+.+.++.|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 466778889887642 1 35667777777776 566789999999987
No 168
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=23.52 E-value=2e+02 Score=27.83 Aligned_cols=105 Identities=13% Similarity=-0.063 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeCCccchhhhH-hhhcCCeEEEcCCceEeccccccCCCCCchHHHHHhcCCCchHHHH
Q 012534 172 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA 250 (461)
Q Consensus 172 ~~~~~~~~~~~l~~~~kPvIAavnG~a~GgG~~-LalacD~ria~e~a~f~~pe~~lGl~P~~G~~~~L~rlvG~~~~a~ 250 (461)
++......+..-+.-.-|||+.|-|.|++|||- -.+.+|-+|+-+ ++.+-..+-. +..+..++. .. .-.
T Consensus 90 alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~-------ga~i~vM~~~-s~ARVTk~~-ve-~Le 159 (234)
T PF06833_consen 90 ALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALP-------GAMIHVMGKP-SAARVTKRP-VE-ELE 159 (234)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCC-------CCeeecCChH-HhHHHhhcC-HH-HHH
Confidence 444444455566778899999999999999874 447777777655 3333222222 223444432 22 344
Q ss_pred HHhhcCCC--CCcHHHHHHcCccceecCCCChHHHHHHH
Q 012534 251 YLGMTGKR--ISTPSDALFAGLGTDYVPSGNLGSLKEAL 287 (461)
Q Consensus 251 ~l~LtG~~--i~~A~eA~~~GLv~~vv~~~~l~~~~~al 287 (461)
+|.-|--. .+ .+--.++|.++++++.+......+++
T Consensus 160 ~la~s~PvfA~g-i~ny~~lG~l~~l~~~~~~~~~~~~~ 197 (234)
T PF06833_consen 160 ELAKSVPVFAPG-IENYAKLGALDELWDGDLADQPAEAL 197 (234)
T ss_pred HHhhcCCCcCCC-HHHHHHhccHHHHhcccccccccHHH
Confidence 45444433 33 45667899999999854444333333
No 169
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=23.24 E-value=1.3e+02 Score=22.98 Aligned_cols=28 Identities=29% Similarity=0.714 Sum_probs=20.4
Q ss_pred hhcCCCccHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 012534 326 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQG 362 (461)
Q Consensus 326 ~~F~~~~s~~~i~~~l~~~~~~~~~~~~~~A~~~~~~ 362 (461)
+||..+.|++.=+.=|.+. .||++-.+.
T Consensus 34 ~CF~~~PsikSSLkFLRkT---------pWAR~KVE~ 61 (64)
T PF09905_consen 34 NCFKNNPSIKSSLKFLRKT---------PWAREKVEN 61 (64)
T ss_dssp SSTTSS--HHHHHHHHHHS---------HHHHHHHHH
T ss_pred ccCCCCCchHHHHHHHhcC---------HhHHHHHHH
Confidence 6999998999888878777 799865444
No 170
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=23.17 E-value=4.3e+02 Score=25.42 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=37.4
Q ss_pred CCCCchHHHHHhcCCCchHHHHHHhh-cC-CCCCcHHHHHHcCccceecCCCChHHHHHHHH
Q 012534 229 LFPDVGFSYIAAKGPGGGSVGAYLGM-TG-KRISTPSDALFAGLGTDYVPSGNLGSLKEALL 288 (461)
Q Consensus 229 l~P~~G~~~~L~rlvG~~~~a~~l~L-tG-~~i~~A~eA~~~GLv~~vv~~~~l~~~~~ala 288 (461)
..|++-|..+|+.+.... ..-+.++ |. ..+.+-++|++.|.+|.++.|=..+.+.++|-
T Consensus 55 YmPd~~Gi~lL~~ir~~~-~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~ 115 (224)
T COG4565 55 YMPDGNGIELLPELRSQH-YPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALT 115 (224)
T ss_pred ccCCCccHHHHHHHHhcC-CCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHH
Confidence 357777777777665433 3333332 21 22233579999999999998877766666653
No 171
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=21.55 E-value=91 Score=28.14 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC
Q 012534 98 KYKSFLDEWESDPRVKCVLIEGSG 121 (461)
Q Consensus 98 eL~~~l~~~~~d~~vr~vVltg~G 121 (461)
...++|..+.+||++++|+|-+.+
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~ 83 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVG 83 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEES
T ss_pred HHHHHHHHHhcCCCccEEEEEecc
Confidence 346668888889999999998876
No 172
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=20.72 E-value=35 Score=23.85 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=16.3
Q ss_pred hcCCCCCcHHHHHHcCcccee
Q 012534 254 MTGKRISTPSDALFAGLGTDY 274 (461)
Q Consensus 254 LtG~~i~~A~eA~~~GLv~~v 274 (461)
-||++++ -.+|++.||+|.-
T Consensus 17 ~tg~~ls-v~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLS-VEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEE-HHHHHHTTSS-HH
T ss_pred CCCeEEc-HHHHHHCCCcCHH
Confidence 3789999 9999999999753
Done!