Query 012535
Match_columns 461
No_of_seqs 533 out of 1417
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 03:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.3E-46 2.7E-51 312.0 25.1 308 30-426 110-479 (480)
2 KOG1354 Serine/threonine prote 100.0 7.1E-47 1.5E-51 309.5 21.2 372 10-445 5-376 (433)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-46 2.4E-51 316.2 21.0 285 31-426 171-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 5.9E-42 1.3E-46 284.3 22.3 278 88-444 103-454 (480)
5 KOG0279 G protein beta subunit 100.0 7.7E-40 1.7E-44 260.9 30.2 298 31-428 11-313 (315)
6 KOG0286 G-protein beta subunit 100.0 7.3E-39 1.6E-43 256.9 28.3 285 30-426 50-343 (343)
7 KOG0273 Beta-transducin family 100.0 1.2E-38 2.6E-43 271.5 29.4 283 31-428 231-523 (524)
8 KOG0315 G-protein beta subunit 100.0 2E-38 4.4E-43 248.7 26.4 291 48-444 11-303 (311)
9 COG5170 CDC55 Serine/threonine 100.0 5.6E-40 1.2E-44 266.0 15.5 363 15-429 6-368 (460)
10 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-38 2.5E-43 268.1 19.0 256 113-447 176-436 (459)
11 KOG0295 WD40 repeat-containing 100.0 5.4E-36 1.2E-40 247.5 24.0 285 31-427 104-405 (406)
12 KOG0284 Polyadenylation factor 100.0 5.7E-37 1.2E-41 256.8 17.8 282 34-428 95-380 (464)
13 KOG0263 Transcription initiati 100.0 2.3E-36 4.9E-41 273.9 22.5 263 36-431 379-652 (707)
14 KOG0265 U5 snRNP-specific prot 100.0 1.9E-35 4.1E-40 238.3 24.9 292 31-426 43-336 (338)
15 KOG0286 G-protein beta subunit 100.0 3.8E-35 8.2E-40 235.7 25.9 276 92-449 47-323 (343)
16 KOG0285 Pleiotropic regulator 100.0 1.7E-35 3.6E-40 244.0 23.6 298 16-428 140-439 (460)
17 KOG0318 WD40 repeat stress pro 100.0 1.8E-34 3.9E-39 249.4 30.9 314 33-447 188-579 (603)
18 KOG0282 mRNA splicing factor [ 100.0 3.3E-36 7.2E-41 257.6 18.5 296 25-426 204-503 (503)
19 KOG0273 Beta-transducin family 100.0 5.5E-35 1.2E-39 249.3 25.7 302 31-433 174-487 (524)
20 KOG0645 WD40 repeat protein [G 100.0 3.9E-34 8.5E-39 227.4 28.4 291 31-428 10-311 (312)
21 KOG0319 WD40-repeat-containing 100.0 2.9E-35 6.2E-40 264.2 22.9 376 31-447 101-595 (775)
22 KOG0296 Angio-associated migra 100.0 4.6E-34 1E-38 236.2 27.6 292 30-428 59-398 (399)
23 KOG0293 WD40 repeat-containing 100.0 8.3E-35 1.8E-39 244.2 22.2 290 32-429 221-514 (519)
24 KOG0315 G-protein beta subunit 100.0 1.4E-33 2.9E-38 221.6 25.0 265 32-386 36-303 (311)
25 cd00200 WD40 WD40 domain, foun 100.0 6.5E-33 1.4E-37 246.8 32.5 282 32-426 6-289 (289)
26 KOG0291 WD40-repeat-containing 100.0 2.5E-33 5.5E-38 252.3 29.5 301 36-433 308-617 (893)
27 KOG0279 G protein beta subunit 100.0 1.7E-33 3.6E-38 224.8 23.9 269 14-370 40-313 (315)
28 KOG0291 WD40-repeat-containing 100.0 1.1E-32 2.5E-37 248.1 30.8 324 31-441 141-521 (893)
29 KOG0313 Microtubule binding pr 100.0 2.6E-33 5.6E-38 232.9 23.1 306 20-428 90-418 (423)
30 KOG0281 Beta-TrCP (transducin 100.0 2E-34 4.3E-39 237.0 16.3 275 34-431 196-480 (499)
31 KOG0266 WD40 repeat-containing 100.0 1.3E-32 2.8E-37 256.2 29.6 288 34-428 158-454 (456)
32 KOG0316 Conserved WD40 repeat- 100.0 5.1E-33 1.1E-37 216.7 22.1 255 32-443 14-271 (307)
33 PLN00181 protein SPA1-RELATED; 100.0 1.1E-31 2.3E-36 268.8 36.3 307 31-427 479-792 (793)
34 KOG0319 WD40-repeat-containing 100.0 4E-33 8.7E-38 250.5 22.7 297 31-430 319-621 (775)
35 KOG0318 WD40 repeat stress pro 100.0 7.1E-32 1.5E-36 233.5 29.3 314 31-450 55-372 (603)
36 KOG0283 WD40 repeat-containing 100.0 9.1E-33 2E-37 252.7 24.7 272 33-429 265-577 (712)
37 KOG0295 WD40 repeat-containing 100.0 3.6E-33 7.8E-38 230.8 19.4 270 87-446 95-381 (406)
38 KOG0285 Pleiotropic regulator 100.0 3.9E-33 8.4E-38 230.1 19.1 257 85-432 136-393 (460)
39 KOG1407 WD40 repeat protein [F 100.0 9.1E-32 2E-36 212.9 25.6 286 30-428 15-311 (313)
40 KOG0268 Sof1-like rRNA process 100.0 3.4E-33 7.4E-38 230.8 17.1 298 18-433 49-350 (433)
41 KOG0284 Polyadenylation factor 100.0 1.9E-33 4.2E-38 235.7 14.2 260 112-449 96-358 (464)
42 KOG0263 Transcription initiati 100.0 3.5E-32 7.7E-37 246.8 22.8 248 31-359 447-703 (707)
43 KOG0643 Translation initiation 100.0 3.2E-31 6.9E-36 210.5 23.8 294 30-429 5-318 (327)
44 KOG0276 Vesicle coat complex C 100.0 7.5E-32 1.6E-36 238.0 22.4 249 32-433 10-262 (794)
45 KOG0278 Serine/threonine kinas 100.0 2.8E-32 6E-37 214.5 16.5 289 30-434 9-303 (334)
46 KOG0306 WD40-repeat-containing 100.0 3.6E-31 7.7E-36 238.4 25.7 290 30-429 368-665 (888)
47 KOG0265 U5 snRNP-specific prot 100.0 8.9E-31 1.9E-35 211.4 23.6 276 92-454 39-321 (338)
48 KOG0275 Conserved WD40 repeat- 100.0 2.5E-31 5.5E-36 216.9 19.3 277 32-451 210-489 (508)
49 KOG0266 WD40 repeat-containing 100.0 2.2E-30 4.7E-35 241.3 27.5 257 113-440 160-420 (456)
50 KOG0292 Vesicle coat complex C 100.0 1.9E-30 4.1E-35 237.7 25.9 294 33-430 7-323 (1202)
51 KOG0645 WD40 repeat protein [G 100.0 6.2E-30 1.4E-34 203.6 25.5 247 33-370 59-311 (312)
52 KOG0277 Peroxisomal targeting 100.0 4.9E-31 1.1E-35 207.9 17.8 283 39-427 12-308 (311)
53 KOG0292 Vesicle coat complex C 100.0 1E-29 2.2E-34 233.0 28.1 254 30-371 46-322 (1202)
54 KOG0772 Uncharacterized conser 100.0 5.9E-30 1.3E-34 221.1 24.0 315 31-429 163-488 (641)
55 KOG0640 mRNA cleavage stimulat 100.0 7.8E-31 1.7E-35 212.7 17.3 314 32-428 109-426 (430)
56 PTZ00421 coronin; Provisional 100.0 1.1E-28 2.4E-33 228.6 32.3 283 18-433 5-295 (493)
57 KOG1446 Histone H3 (Lys4) meth 100.0 5E-28 1.1E-32 197.5 31.0 265 34-447 13-281 (311)
58 KOG0305 Anaphase promoting com 100.0 6.6E-29 1.4E-33 221.6 24.5 278 38-430 180-463 (484)
59 KOG0306 WD40-repeat-containing 100.0 1.4E-28 2.9E-33 221.9 26.4 356 14-449 89-600 (888)
60 KOG0288 WD40 repeat protein Ti 100.0 1.9E-29 4.1E-34 212.2 16.5 292 26-426 166-459 (459)
61 KOG0264 Nucleosome remodeling 100.0 4.1E-28 9E-33 207.0 22.6 267 31-429 120-405 (422)
62 KOG0274 Cdc4 and related F-box 100.0 1.7E-27 3.8E-32 220.9 27.9 280 34-436 207-490 (537)
63 KOG0282 mRNA splicing factor [ 100.0 5.8E-29 1.3E-33 213.5 16.4 277 92-455 206-488 (503)
64 KOG0277 Peroxisomal targeting 100.0 1.5E-28 3.2E-33 194.0 17.4 245 34-369 59-308 (311)
65 KOG0281 Beta-TrCP (transducin 100.0 1.2E-29 2.6E-34 208.9 11.3 233 113-432 198-432 (499)
66 cd00200 WD40 WD40 domain, foun 100.0 3.4E-27 7.4E-32 209.8 28.0 256 113-447 10-267 (289)
67 KOG0772 Uncharacterized conser 100.0 2.5E-28 5.3E-33 211.2 18.9 264 113-433 168-450 (641)
68 KOG0289 mRNA splicing factor [ 100.0 4.5E-27 9.8E-32 199.2 25.0 284 34-427 218-505 (506)
69 KOG2096 WD40 repeat protein [G 100.0 7.1E-27 1.5E-31 190.5 24.9 332 15-430 64-404 (420)
70 KOG1408 WD40 repeat protein [F 100.0 3E-27 6.4E-32 212.2 23.9 303 38-429 327-714 (1080)
71 KOG0294 WD40 repeat-containing 100.0 1.2E-26 2.7E-31 188.9 25.3 255 11-430 25-283 (362)
72 KOG0310 Conserved WD40 repeat- 100.0 4.5E-27 9.8E-32 202.2 23.6 285 33-431 24-312 (487)
73 PTZ00420 coronin; Provisional 100.0 6.6E-26 1.4E-30 211.1 32.9 239 53-431 50-296 (568)
74 PLN00181 protein SPA1-RELATED; 100.0 1.2E-26 2.5E-31 232.7 30.0 249 113-431 484-741 (793)
75 KOG1332 Vesicle coat complex C 100.0 8.8E-28 1.9E-32 188.6 16.7 265 31-374 7-290 (299)
76 KOG0647 mRNA export protein (c 100.0 2.8E-26 6.1E-31 185.7 25.0 284 33-416 25-311 (347)
77 KOG0973 Histone transcription 100.0 5.7E-27 1.2E-31 220.5 24.3 306 34-431 12-358 (942)
78 KOG0641 WD40 repeat protein [G 100.0 3.1E-25 6.7E-30 172.5 29.5 309 31-428 28-349 (350)
79 PTZ00421 coronin; Provisional 100.0 1E-25 2.3E-30 208.9 31.7 221 31-381 71-300 (493)
80 KOG0296 Angio-associated migra 100.0 2.1E-26 4.5E-31 191.1 23.6 261 15-370 89-398 (399)
81 KOG0313 Microtubule binding pr 100.0 8.1E-27 1.8E-31 194.4 21.0 270 107-444 100-392 (423)
82 KOG0276 Vesicle coat complex C 100.0 8.5E-27 1.8E-31 206.2 21.7 238 34-424 54-295 (794)
83 KOG0299 U3 snoRNP-associated p 100.0 3E-26 6.5E-31 195.7 24.0 310 31-426 138-454 (479)
84 KOG0639 Transducin-like enhanc 100.0 1.7E-26 3.8E-31 199.2 21.1 288 30-427 414-703 (705)
85 KOG0310 Conserved WD40 repeat- 100.0 2.6E-26 5.6E-31 197.6 21.9 243 33-370 66-309 (487)
86 KOG0293 WD40 repeat-containing 100.0 1.9E-26 4.2E-31 194.2 20.6 259 113-449 225-490 (519)
87 KOG1063 RNA polymerase II elon 99.9 9.8E-26 2.1E-30 201.9 24.5 328 30-430 186-650 (764)
88 KOG0308 Conserved WD40 repeat- 99.9 1.7E-26 3.8E-31 205.2 19.2 261 32-431 18-288 (735)
89 KOG2445 Nuclear pore complex c 99.9 7.8E-25 1.7E-29 177.9 26.8 273 31-430 9-320 (361)
90 KOG2055 WD40 repeat protein [G 99.9 1.4E-25 3E-30 191.7 23.5 295 35-428 213-512 (514)
91 KOG0301 Phospholipase A2-activ 99.9 1.8E-25 3.9E-30 200.2 24.8 277 31-429 10-289 (745)
92 KOG1036 Mitotic spindle checkp 99.9 6.8E-25 1.5E-29 178.4 25.8 281 34-418 12-294 (323)
93 KOG0305 Anaphase promoting com 99.9 3.3E-25 7.2E-30 198.1 23.3 238 35-371 217-462 (484)
94 KOG1273 WD40 repeat protein [G 99.9 1E-24 2.2E-29 177.8 23.1 291 38-429 26-323 (405)
95 KOG1407 WD40 repeat protein [F 99.9 1.1E-24 2.3E-29 173.0 22.5 251 94-433 14-266 (313)
96 KOG0641 WD40 repeat protein [G 99.9 2.5E-24 5.5E-29 167.4 23.9 291 102-451 22-329 (350)
97 KOG0640 mRNA cleavage stimulat 99.9 2.7E-25 5.9E-30 180.7 19.2 287 113-451 113-406 (430)
98 KOG0278 Serine/threonine kinas 99.9 4.2E-26 9.2E-31 179.8 14.0 261 113-451 15-277 (334)
99 KOG0269 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 203.6 18.6 293 35-429 39-341 (839)
100 KOG0973 Histone transcription 99.9 5.5E-25 1.2E-29 207.2 23.3 269 31-371 65-356 (942)
101 KOG4283 Transcription-coupled 99.9 3.2E-24 7E-29 173.3 24.4 314 31-428 39-365 (397)
102 KOG0316 Conserved WD40 repeat- 99.9 4.6E-25 1E-29 172.5 18.8 207 113-442 18-226 (307)
103 KOG0275 Conserved WD40 repeat- 99.9 1.5E-25 3.3E-30 183.3 16.2 246 31-426 259-507 (508)
104 KOG0300 WD40 repeat-containing 99.9 7.3E-25 1.6E-29 178.8 20.1 281 30-431 143-431 (481)
105 KOG2919 Guanine nucleotide-bin 99.9 4.9E-24 1.1E-28 174.4 23.4 288 36-445 50-344 (406)
106 KOG0274 Cdc4 and related F-box 99.9 2.2E-24 4.8E-29 200.3 23.5 261 16-382 232-493 (537)
107 KOG0288 WD40 repeat protein Ti 99.9 1.1E-25 2.3E-30 189.8 13.0 252 113-441 176-429 (459)
108 KOG1539 WD repeat protein [Gen 99.9 1.5E-23 3.3E-28 191.7 27.9 309 38-435 162-613 (910)
109 KOG1539 WD repeat protein [Gen 99.9 3.7E-24 8.1E-29 195.7 23.7 324 31-429 239-649 (910)
110 KOG0283 WD40 repeat-containing 99.9 2E-24 4.3E-29 198.4 21.5 274 111-444 266-547 (712)
111 KOG1274 WD40 repeat protein [G 99.9 1.9E-23 4.2E-28 193.2 28.0 283 32-425 10-297 (933)
112 KOG0321 WD40 repeat-containing 99.9 9.4E-24 2E-28 187.6 24.6 309 40-433 54-396 (720)
113 PTZ00420 coronin; Provisional 99.9 2.1E-23 4.6E-28 194.4 27.8 237 31-352 70-317 (568)
114 KOG0299 U3 snoRNP-associated p 99.9 4.1E-24 8.9E-29 182.8 20.9 259 112-430 142-412 (479)
115 KOG0646 WD40 repeat protein [G 99.9 4.7E-24 1E-28 182.8 20.9 238 34-387 80-323 (476)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-22 2.8E-27 181.9 31.7 283 47-440 1-290 (300)
117 KOG2048 WD40 repeat protein [G 99.9 4.8E-23 1E-27 184.4 27.7 290 35-429 25-320 (691)
118 KOG0264 Nucleosome remodeling 99.9 5.2E-24 1.1E-28 182.1 19.3 231 106-434 118-353 (422)
119 KOG4328 WD40 protein [Function 99.9 1.7E-23 3.7E-28 178.9 21.9 308 31-429 182-496 (498)
120 KOG0300 WD40 repeat-containing 99.9 1.3E-23 2.8E-28 171.6 19.6 286 9-430 167-478 (481)
121 KOG0289 mRNA splicing factor [ 99.9 4.1E-23 8.9E-28 175.4 23.1 248 30-369 256-505 (506)
122 KOG0647 mRNA export protein (c 99.9 2.5E-23 5.4E-28 168.7 20.6 254 15-359 53-311 (347)
123 KOG0302 Ribosome Assembly prot 99.9 2.9E-23 6.2E-28 173.3 21.1 267 31-425 147-435 (440)
124 KOG0650 WD40 repeat nucleolar 99.9 2.7E-23 5.9E-28 183.4 21.1 313 21-425 386-732 (733)
125 KOG0308 Conserved WD40 repeat- 99.9 6.9E-24 1.5E-28 188.8 16.9 334 13-433 48-398 (735)
126 KOG1408 WD40 repeat protein [F 99.9 1.8E-22 3.9E-27 181.8 25.9 358 37-450 262-692 (1080)
127 KOG0268 Sof1-like rRNA process 99.9 1.6E-24 3.5E-29 179.8 11.8 247 92-431 58-305 (433)
128 KOG1332 Vesicle coat complex C 99.9 1.6E-23 3.4E-28 164.9 16.7 252 113-430 12-288 (299)
129 KOG1446 Histone H3 (Lys4) meth 99.9 2.9E-22 6.2E-27 164.0 24.0 246 34-370 55-303 (311)
130 KOG1036 Mitotic spindle checkp 99.9 2.4E-22 5.3E-27 163.6 23.3 249 113-433 14-267 (323)
131 KOG2106 Uncharacterized conser 99.9 3.6E-21 7.8E-26 166.7 31.1 291 31-427 196-520 (626)
132 KOG0301 Phospholipase A2-activ 99.9 6.8E-23 1.5E-27 183.9 20.6 247 88-428 2-249 (745)
133 KOG0267 Microtubule severing p 99.9 2.3E-24 5E-29 194.1 9.8 234 31-361 24-258 (825)
134 KOG2096 WD40 repeat protein [G 99.9 2E-22 4.2E-27 164.8 20.0 286 93-446 79-378 (420)
135 KOG0646 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 173.4 20.0 254 126-445 50-323 (476)
136 KOG2048 WD40 repeat protein [G 99.9 6.1E-21 1.3E-25 171.1 29.6 348 12-433 90-510 (691)
137 KOG2106 Uncharacterized conser 99.9 4.3E-21 9.2E-26 166.3 27.0 332 27-441 96-490 (626)
138 KOG1063 RNA polymerase II elon 99.9 8.5E-22 1.8E-26 176.9 23.1 309 30-428 49-391 (764)
139 KOG0302 Ribosome Assembly prot 99.9 3.8E-22 8.2E-27 166.7 19.0 167 230-430 208-380 (440)
140 KOG1188 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 161.3 20.7 195 48-371 41-243 (376)
141 KOG4283 Transcription-coupled 99.9 3E-21 6.4E-26 156.3 21.6 219 113-371 44-277 (397)
142 KOG0294 WD40 repeat-containing 99.9 3.1E-21 6.6E-26 157.6 21.1 251 49-448 3-256 (362)
143 KOG0269 WD40 repeat-containing 99.9 1.2E-21 2.6E-26 178.1 20.4 212 196-450 101-318 (839)
144 KOG0639 Transducin-like enhanc 99.9 4.3E-22 9.4E-27 172.3 16.2 252 106-433 413-668 (705)
145 KOG0643 Translation initiation 99.9 7.9E-21 1.7E-25 151.7 21.6 273 95-452 5-298 (327)
146 KOG4378 Nuclear protein COP1 [ 99.9 5.7E-21 1.2E-25 165.2 22.4 259 113-449 35-301 (673)
147 KOG0322 G-protein beta subunit 99.9 3.4E-21 7.3E-26 153.5 18.7 300 33-427 12-322 (323)
148 KOG1274 WD40 repeat protein [G 99.9 8.1E-21 1.8E-25 176.0 24.0 247 113-429 14-263 (933)
149 KOG0270 WD40 repeat-containing 99.9 6E-21 1.3E-25 162.9 19.5 267 39-434 177-455 (463)
150 KOG4328 WD40 protein [Function 99.9 1.1E-20 2.4E-25 161.9 21.0 262 112-433 186-455 (498)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-19 2.9E-24 162.4 29.5 255 35-384 30-292 (300)
152 KOG0267 Microtubule severing p 99.9 1.9E-22 4.2E-27 181.8 9.7 230 113-420 29-260 (825)
153 KOG0307 Vesicle coat complex C 99.9 2.2E-21 4.7E-26 184.1 15.9 259 31-431 60-330 (1049)
154 KOG4378 Nuclear protein COP1 [ 99.9 1.5E-20 3.3E-25 162.6 19.0 285 14-410 14-305 (673)
155 KOG1538 Uncharacterized conser 99.9 3.2E-20 7E-25 166.3 21.6 276 37-430 14-295 (1081)
156 KOG1034 Transcriptional repres 99.9 1.2E-20 2.7E-25 155.0 16.2 263 33-428 87-383 (385)
157 KOG1007 WD repeat protein TSSC 99.9 1.5E-19 3.2E-24 146.1 21.4 263 31-429 59-362 (370)
158 KOG1517 Guanine nucleotide bin 99.9 2.5E-19 5.3E-24 168.6 25.8 309 37-431 1066-1384(1387)
159 KOG0307 Vesicle coat complex C 99.9 5.5E-21 1.2E-25 181.4 14.0 169 230-433 113-289 (1049)
160 KOG1445 Tumor-specific antigen 99.9 1.9E-19 4.2E-24 160.5 22.5 125 284-433 629-755 (1012)
161 KOG0303 Actin-binding protein 99.9 3.4E-19 7.3E-24 150.1 21.8 277 18-432 10-298 (472)
162 KOG1587 Cytoplasmic dynein int 99.8 4.5E-19 9.7E-24 163.7 23.9 285 13-370 223-516 (555)
163 KOG2055 WD40 repeat protein [G 99.8 1.3E-19 2.9E-24 155.5 18.8 251 34-370 256-512 (514)
164 KOG0321 WD40 repeat-containing 99.8 2.8E-19 6E-24 159.5 20.0 269 30-371 95-392 (720)
165 KOG0650 WD40 repeat nucleolar 99.8 2.8E-19 6.1E-24 158.3 19.9 260 93-427 393-679 (733)
166 KOG1009 Chromatin assembly com 99.8 2.4E-18 5.3E-23 145.5 24.5 304 35-431 13-375 (434)
167 KOG1034 Transcriptional repres 99.8 2.6E-19 5.7E-24 147.3 18.2 284 32-433 35-342 (385)
168 KOG0642 Cell-cycle nuclear pro 99.8 1.3E-19 2.9E-24 159.4 16.7 275 31-433 290-566 (577)
169 KOG0270 WD40 repeat-containing 99.8 2.6E-19 5.6E-24 153.0 16.0 205 33-371 241-450 (463)
170 KOG4227 WD40 repeat protein [G 99.8 2.7E-18 5.7E-23 144.7 20.3 311 31-428 52-387 (609)
171 KOG2445 Nuclear pore complex c 99.8 5.7E-18 1.2E-22 138.3 21.2 245 31-371 55-319 (361)
172 KOG1334 WD40 repeat protein [G 99.8 6E-19 1.3E-23 152.6 16.3 320 31-430 138-468 (559)
173 KOG1524 WD40 repeat-containing 99.8 1.8E-18 3.9E-23 151.4 18.8 215 126-431 75-289 (737)
174 KOG0649 WD40 repeat protein [G 99.8 9.6E-18 2.1E-22 132.5 20.9 262 36-428 11-274 (325)
175 KOG0644 Uncharacterized conser 99.8 1.8E-19 4E-24 165.3 13.1 282 31-431 186-471 (1113)
176 KOG0290 Conserved WD40 repeat- 99.8 5.8E-18 1.3E-22 137.1 19.7 167 230-430 147-320 (364)
177 PRK11028 6-phosphogluconolacto 99.8 3.4E-16 7.5E-21 141.6 31.5 259 114-428 36-304 (330)
178 KOG2110 Uncharacterized conser 99.8 3.6E-16 7.7E-21 131.1 28.4 238 35-371 5-249 (391)
179 KOG1007 WD repeat protein TSSC 99.8 1.9E-17 4.2E-22 134.0 19.3 224 33-370 121-361 (370)
180 KOG1273 WD40 repeat protein [G 99.8 2.4E-17 5.1E-22 135.1 19.2 256 115-441 26-292 (405)
181 KOG0290 Conserved WD40 repeat- 99.8 3.5E-17 7.6E-22 132.7 19.3 257 31-367 92-362 (364)
182 KOG1963 WD40 repeat protein [G 99.8 1E-16 2.2E-21 148.7 24.8 326 40-433 21-380 (792)
183 KOG1445 Tumor-specific antigen 99.8 1.9E-17 4E-22 148.0 18.8 260 46-444 590-860 (1012)
184 KOG1587 Cytoplasmic dynein int 99.8 1.8E-16 3.9E-21 146.7 25.9 262 113-430 243-518 (555)
185 KOG1310 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 146.5 17.3 184 30-314 45-232 (758)
186 KOG1240 Protein kinase contain 99.8 1.4E-16 3.1E-21 152.6 24.5 293 12-371 1029-1335(1431)
187 KOG0303 Actin-binding protein 99.8 2E-17 4.4E-22 139.5 16.3 226 31-328 77-309 (472)
188 KOG1963 WD40 repeat protein [G 99.8 3.7E-16 8.1E-21 145.1 25.2 319 31-430 201-540 (792)
189 KOG4497 Uncharacterized conser 99.8 1.7E-16 3.6E-21 131.0 19.2 293 40-433 13-396 (447)
190 KOG1538 Uncharacterized conser 99.8 5.3E-16 1.1E-20 139.6 23.5 241 30-314 48-294 (1081)
191 COG2319 FOG: WD40 repeat [Gene 99.7 1.2E-14 2.7E-19 137.2 33.1 292 31-431 61-362 (466)
192 KOG1240 Protein kinase contain 99.7 8.1E-16 1.8E-20 147.5 24.3 289 84-431 1032-1337(1431)
193 KOG2919 Guanine nucleotide-bin 99.7 7.7E-16 1.7E-20 126.8 20.4 249 34-367 103-366 (406)
194 PRK11028 6-phosphogluconolacto 99.7 6.1E-15 1.3E-19 133.5 27.9 265 31-371 30-305 (330)
195 KOG1523 Actin-related protein 99.7 2.8E-15 6E-20 123.5 22.7 226 35-379 10-245 (361)
196 COG2319 FOG: WD40 repeat [Gene 99.7 4.9E-14 1.1E-18 133.1 31.8 287 30-429 150-443 (466)
197 KOG1009 Chromatin assembly com 99.7 3.7E-16 8E-21 132.5 15.1 200 197-417 28-249 (434)
198 PRK01742 tolB translocation pr 99.7 2E-15 4.4E-20 140.8 19.9 208 113-386 204-418 (429)
199 KOG4227 WD40 repeat protein [G 99.7 2.6E-15 5.6E-20 126.9 17.4 269 92-429 48-323 (609)
200 KOG0771 Prolactin regulatory e 99.7 1.4E-15 3E-20 129.9 15.8 201 39-371 148-355 (398)
201 KOG2139 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 121.3 20.7 269 35-430 98-385 (445)
202 KOG1517 Guanine nucleotide bin 99.7 1.1E-14 2.3E-19 137.9 21.4 261 115-432 1067-1337(1387)
203 KOG2111 Uncharacterized conser 99.7 5.5E-13 1.2E-17 110.1 27.3 239 37-371 7-257 (346)
204 KOG0644 Uncharacterized conser 99.7 6.1E-16 1.3E-20 142.6 10.6 251 113-446 191-444 (1113)
205 KOG2110 Uncharacterized conser 99.6 6.7E-14 1.5E-18 117.7 21.6 161 233-431 87-251 (391)
206 KOG2139 WD40 repeat protein [G 99.6 8.1E-14 1.8E-18 116.8 21.0 262 35-370 140-431 (445)
207 KOG1523 Actin-related protein 99.6 1.8E-14 3.9E-19 118.8 16.9 225 113-432 11-240 (361)
208 PF08662 eIF2A: Eukaryotic tra 99.6 1.9E-14 4.2E-19 117.8 16.7 149 238-430 10-181 (194)
209 KOG2321 WD40 repeat protein [G 99.6 1.4E-13 3E-18 122.2 22.3 292 28-429 44-344 (703)
210 PRK01742 tolB translocation pr 99.6 3E-14 6.6E-19 132.9 19.4 225 135-443 183-417 (429)
211 KOG0649 WD40 repeat protein [G 99.6 7.3E-14 1.6E-18 110.8 17.7 217 176-433 15-240 (325)
212 KOG0642 Cell-cycle nuclear pro 99.6 1.3E-14 2.8E-19 128.4 14.9 221 31-316 340-564 (577)
213 KOG3881 Uncharacterized conser 99.6 1E-13 2.2E-18 117.4 19.5 155 247-433 163-325 (412)
214 KOG1272 WD40-repeat-containing 99.6 9E-15 1.9E-19 126.3 12.8 317 6-438 92-419 (545)
215 KOG0771 Prolactin regulatory e 99.6 1.8E-14 4E-19 123.1 14.5 200 176-430 149-356 (398)
216 PF02239 Cytochrom_D1: Cytochr 99.6 4.9E-13 1.1E-17 120.7 24.5 296 48-433 6-352 (369)
217 KOG2394 WD40 protein DMR-N9 [G 99.6 7.3E-14 1.6E-18 123.0 18.4 193 124-387 183-378 (636)
218 KOG1188 WD40 repeat protein [G 99.6 3.1E-14 6.8E-19 118.4 15.1 191 198-433 43-247 (376)
219 KOG1334 WD40 repeat protein [G 99.6 4.8E-14 1E-18 122.7 16.1 293 90-451 132-446 (559)
220 KOG0322 G-protein beta subunit 99.6 2.4E-14 5.1E-19 114.9 12.7 150 197-369 167-322 (323)
221 KOG1524 WD40 repeat-containing 99.6 5.4E-14 1.2E-18 123.8 14.7 182 194-430 74-257 (737)
222 PRK03629 tolB translocation pr 99.6 1.3E-12 2.7E-17 121.8 24.1 206 113-386 199-420 (429)
223 PRK02889 tolB translocation pr 99.6 9.2E-13 2E-17 122.8 22.8 210 113-386 196-417 (427)
224 KOG1272 WD40-repeat-containing 99.6 6.7E-14 1.5E-18 121.0 13.1 227 115-427 132-361 (545)
225 KOG2315 Predicted translation 99.6 6.2E-12 1.4E-16 111.7 25.5 112 281-430 269-392 (566)
226 KOG2111 Uncharacterized conser 99.5 4.1E-12 8.9E-17 105.0 22.4 182 205-431 75-259 (346)
227 PF08662 eIF2A: Eukaryotic tra 99.5 4E-13 8.6E-18 110.1 15.8 116 232-379 58-186 (194)
228 PRK05137 tolB translocation pr 99.5 8.9E-12 1.9E-16 116.9 26.7 153 235-432 247-416 (435)
229 PF10282 Lactonase: Lactonase, 99.5 1.1E-10 2.3E-15 105.8 32.6 259 114-428 38-322 (345)
230 COG2706 3-carboxymuconate cycl 99.5 2.6E-10 5.6E-15 96.7 31.7 291 14-430 18-323 (346)
231 KOG2394 WD40 protein DMR-N9 [G 99.5 2.7E-13 5.8E-18 119.5 14.2 188 242-450 182-383 (636)
232 PRK03629 tolB translocation pr 99.5 7.9E-12 1.7E-16 116.5 24.7 214 136-430 179-408 (429)
233 PRK04922 tolB translocation pr 99.5 2.6E-12 5.5E-17 120.3 21.2 204 113-384 204-423 (433)
234 KOG4497 Uncharacterized conser 99.5 4.5E-11 9.8E-16 99.4 23.3 290 35-421 48-425 (447)
235 PF10282 Lactonase: Lactonase, 99.5 3.3E-10 7.2E-15 102.7 30.6 273 34-371 35-323 (345)
236 KOG3881 Uncharacterized conser 99.5 1.1E-11 2.3E-16 105.4 18.7 118 236-377 205-326 (412)
237 KOG2314 Translation initiation 99.5 4.8E-11 1E-15 106.0 22.9 279 39-430 214-575 (698)
238 KOG1310 WD40 repeat protein [G 99.4 7.5E-13 1.6E-17 117.0 11.0 181 229-428 46-231 (758)
239 KOG1409 Uncharacterized conser 99.4 1.5E-11 3.3E-16 102.8 17.0 240 31-316 20-273 (404)
240 KOG0280 Uncharacterized conser 99.4 7.6E-11 1.6E-15 96.6 20.5 254 113-430 70-335 (339)
241 PRK05137 tolB translocation pr 99.4 4E-11 8.7E-16 112.5 21.9 194 33-370 199-412 (435)
242 PRK04922 tolB translocation pr 99.4 2.4E-11 5.2E-16 113.8 19.3 200 33-315 201-413 (433)
243 KOG0974 WD-repeat protein WDR6 99.4 2.3E-11 5E-16 115.8 18.6 151 239-431 139-291 (967)
244 TIGR02800 propeller_TolB tol-p 99.4 4E-10 8.6E-15 105.9 25.9 149 236-429 236-398 (417)
245 KOG4547 WD40 repeat-containing 99.4 4.1E-11 8.9E-16 107.4 17.5 146 244-429 69-221 (541)
246 KOG2315 Predicted translation 99.4 2.1E-10 4.5E-15 102.3 21.2 287 37-377 75-395 (566)
247 PF02239 Cytochrom_D1: Cytochr 99.4 5.2E-10 1.1E-14 101.2 24.5 260 39-380 40-356 (369)
248 PRK02889 tolB translocation pr 99.3 6.6E-11 1.4E-15 110.4 18.0 162 230-433 192-365 (427)
249 COG5354 Uncharacterized protei 99.3 1.1E-09 2.3E-14 96.7 23.8 296 34-431 31-398 (561)
250 KOG2041 WD40 repeat protein [G 99.3 2.1E-10 4.6E-15 105.1 19.6 278 32-371 11-338 (1189)
251 KOG4547 WD40 repeat-containing 99.3 6.3E-10 1.4E-14 99.9 22.1 140 198-371 73-221 (541)
252 KOG2321 WD40 repeat protein [G 99.3 3.4E-10 7.3E-15 101.2 19.5 265 104-439 43-312 (703)
253 PRK04792 tolB translocation pr 99.3 1E-09 2.2E-14 102.9 22.6 204 113-384 218-437 (448)
254 TIGR02800 propeller_TolB tol-p 99.3 6.4E-10 1.4E-14 104.5 21.2 203 33-381 187-406 (417)
255 PRK01029 tolB translocation pr 99.3 4E-09 8.8E-14 98.0 25.9 199 114-371 186-404 (428)
256 PRK00178 tolB translocation pr 99.3 1.8E-09 3.8E-14 101.6 23.4 202 113-382 199-416 (430)
257 KOG1064 RAVE (regulator of V-A 99.3 9.3E-11 2E-15 117.6 14.5 251 11-362 2184-2438(2439)
258 COG2706 3-carboxymuconate cycl 99.2 2.2E-08 4.8E-13 85.2 25.4 214 176-430 44-276 (346)
259 TIGR02658 TTQ_MADH_Hv methylam 99.2 9.9E-08 2.2E-12 84.5 30.2 258 120-435 53-337 (352)
260 PRK04792 tolB translocation pr 99.2 1.3E-08 2.8E-13 95.4 25.0 190 176-430 222-427 (448)
261 COG5354 Uncharacterized protei 99.2 6.5E-09 1.4E-13 91.9 20.9 282 32-370 69-395 (561)
262 PRK00178 tolB translocation pr 99.2 3.7E-09 8E-14 99.5 21.0 201 32-315 195-408 (430)
263 PF04762 IKI3: IKI3 family; I 99.2 4.9E-08 1.1E-12 98.3 29.7 345 35-429 120-520 (928)
264 KOG1354 Serine/threonine prote 99.2 1E-09 2.2E-14 92.1 14.7 297 31-367 80-431 (433)
265 PRK01029 tolB translocation pr 99.2 7.8E-09 1.7E-13 96.2 22.0 203 35-316 184-406 (428)
266 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.1E-07 2.4E-12 84.2 27.6 255 43-379 53-338 (352)
267 PF04762 IKI3: IKI3 family; I 99.1 8E-08 1.7E-12 96.8 28.8 317 34-430 74-458 (928)
268 KOG0309 Conserved WD40 repeat- 99.1 6.4E-10 1.4E-14 102.4 12.6 302 33-430 22-341 (1081)
269 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.7E-12 97.3 29.9 293 116-432 571-892 (1057)
270 COG4946 Uncharacterized protei 99.1 1.2E-07 2.5E-12 83.5 23.6 149 244-437 331-486 (668)
271 KOG0974 WD-repeat protein WDR6 99.1 2.3E-09 5E-14 102.6 14.3 190 125-371 98-289 (967)
272 KOG4532 WD40-like repeat conta 99.1 6E-08 1.3E-12 78.9 18.9 254 39-370 71-331 (344)
273 PLN02919 haloacid dehalogenase 99.0 4.3E-07 9.2E-12 93.5 29.4 290 39-371 571-889 (1057)
274 KOG4532 WD40-like repeat conta 99.0 1.6E-07 3.4E-12 76.5 20.6 242 126-429 84-332 (344)
275 KOG0280 Uncharacterized conser 99.0 9.3E-09 2E-13 84.6 13.5 192 198-432 88-288 (339)
276 KOG1064 RAVE (regulator of V-A 99.0 3.8E-09 8.3E-14 106.5 13.3 194 113-380 2209-2407(2439)
277 PF15492 Nbas_N: Neuroblastoma 99.0 4.6E-07 9.9E-12 75.0 22.5 194 235-443 45-273 (282)
278 KOG3914 WD repeat protein WDR4 99.0 1.1E-08 2.4E-13 87.8 13.1 158 236-433 65-228 (390)
279 KOG2695 WD40 repeat protein [G 99.0 5.2E-09 1.1E-13 88.0 9.8 161 240-438 218-385 (425)
280 KOG3914 WD repeat protein WDR4 98.9 2.9E-08 6.3E-13 85.3 13.5 79 230-317 148-227 (390)
281 KOG0882 Cyclophilin-related pe 98.9 7E-08 1.5E-12 84.2 15.6 316 33-425 7-369 (558)
282 KOG1409 Uncharacterized conser 98.9 5E-08 1.1E-12 82.2 13.9 258 91-433 15-275 (404)
283 COG5170 CDC55 Serine/threonine 98.9 4.3E-08 9.2E-13 81.5 12.1 148 279-440 169-321 (460)
284 KOG2041 WD40 repeat protein [G 98.8 9.5E-08 2.1E-12 88.2 14.4 248 113-419 15-279 (1189)
285 KOG4190 Uncharacterized conser 98.8 1.1E-08 2.4E-13 91.5 8.2 173 224-430 776-950 (1034)
286 KOG4714 Nucleoporin [Nuclear s 98.8 2.4E-07 5.3E-12 75.1 14.8 190 198-426 104-316 (319)
287 KOG0309 Conserved WD40 repeat- 98.8 1.7E-08 3.6E-13 93.3 9.3 164 234-433 68-237 (1081)
288 KOG2314 Translation initiation 98.8 1.7E-06 3.7E-11 77.8 21.4 114 234-370 446-573 (698)
289 PRK04043 tolB translocation pr 98.8 2.4E-06 5.2E-11 79.1 23.3 111 239-381 282-409 (419)
290 COG4946 Uncharacterized protei 98.8 1.1E-06 2.3E-11 77.6 19.4 145 230-417 356-507 (668)
291 KOG1912 WD40 repeat protein [G 98.8 7E-07 1.5E-11 83.5 19.0 84 33-151 53-150 (1062)
292 KOG4190 Uncharacterized conser 98.8 3.8E-08 8.2E-13 88.1 9.7 255 30-428 730-988 (1034)
293 KOG4714 Nucleoporin [Nuclear s 98.8 1.5E-07 3.3E-12 76.3 12.1 75 234-315 180-256 (319)
294 TIGR03300 assembly_YfgL outer 98.8 3.2E-06 6.9E-11 78.3 22.1 226 126-425 145-376 (377)
295 TIGR03300 assembly_YfgL outer 98.8 9.9E-06 2.1E-10 75.0 25.3 277 46-439 64-348 (377)
296 KOG1912 WD40 repeat protein [G 98.7 3E-06 6.5E-11 79.4 20.6 258 34-429 14-305 (1062)
297 PF08450 SGL: SMP-30/Gluconola 98.7 3.8E-05 8.2E-10 66.4 26.4 226 40-358 4-242 (246)
298 PF15492 Nbas_N: Neuroblastoma 98.7 4.2E-06 9.2E-11 69.4 18.6 36 281-317 228-263 (282)
299 PF00400 WD40: WD domain, G-be 98.7 5.1E-08 1.1E-12 56.8 5.5 33 31-63 7-39 (39)
300 KOG1832 HIV-1 Vpr-binding prot 98.7 6E-08 1.3E-12 91.7 8.0 221 31-359 1097-1319(1516)
301 KOG2695 WD40 repeat protein [G 98.6 2.1E-07 4.6E-12 78.6 9.2 159 119-317 218-380 (425)
302 PF08450 SGL: SMP-30/Gluconola 98.6 4E-05 8.7E-10 66.2 23.5 225 116-415 3-242 (246)
303 PF07433 DUF1513: Protein of u 98.6 6.5E-05 1.4E-09 64.5 23.3 254 37-368 6-283 (305)
304 KOG1832 HIV-1 Vpr-binding prot 98.6 7.4E-08 1.6E-12 91.1 6.0 193 113-376 1102-1296(1516)
305 PF07433 DUF1513: Protein of u 98.6 8.8E-05 1.9E-09 63.7 23.2 243 113-421 5-278 (305)
306 PF00400 WD40: WD domain, G-be 98.6 1.4E-07 3E-12 54.9 4.6 38 374-426 2-39 (39)
307 PRK04043 tolB translocation pr 98.5 6.9E-06 1.5E-10 76.1 17.7 155 235-434 189-363 (419)
308 PF08596 Lgl_C: Lethal giant l 98.5 2.9E-05 6.4E-10 70.8 21.0 282 37-369 3-334 (395)
309 PRK11138 outer membrane biogen 98.5 0.00011 2.4E-09 68.3 24.3 136 245-427 257-393 (394)
310 KOG2114 Vacuolar assembly/sort 98.5 0.00011 2.4E-09 70.2 23.7 128 233-383 125-256 (933)
311 KOG2066 Vacuolar assembly/sort 98.5 1.4E-05 3E-10 75.5 17.3 193 31-370 35-233 (846)
312 KOG2114 Vacuolar assembly/sort 98.4 3.4E-05 7.3E-10 73.5 19.4 209 178-438 30-252 (933)
313 KOG0882 Cyclophilin-related pe 98.4 2E-06 4.4E-11 75.4 10.6 213 196-440 21-243 (558)
314 KOG1920 IkappaB kinase complex 98.4 0.00025 5.4E-09 70.5 25.0 242 36-371 69-323 (1265)
315 PF13360 PQQ_2: PQQ-like domai 98.4 0.0003 6.5E-09 60.5 23.6 230 135-432 2-234 (238)
316 KOG2066 Vacuolar assembly/sort 98.3 3.4E-05 7.3E-10 73.0 16.7 179 196-428 50-233 (846)
317 KOG1008 Uncharacterized conser 98.3 1.6E-06 3.5E-11 79.5 6.9 211 34-371 55-276 (783)
318 PF11768 DUF3312: Protein of u 98.3 1.1E-05 2.3E-10 74.0 12.1 72 281-371 258-330 (545)
319 PF11768 DUF3312: Protein of u 98.2 7E-05 1.5E-09 68.8 14.9 81 342-440 260-341 (545)
320 KOG1645 RING-finger-containing 98.2 0.00038 8.1E-09 60.8 18.1 311 34-428 134-461 (463)
321 KOG1008 Uncharacterized conser 98.2 1.1E-06 2.3E-11 80.6 2.7 192 198-429 73-276 (783)
322 PRK11138 outer membrane biogen 98.2 0.001 2.3E-08 61.9 22.6 231 126-433 120-358 (394)
323 KOG1275 PAB-dependent poly(A) 98.1 7.5E-05 1.6E-09 71.8 13.5 180 196-426 148-340 (1118)
324 PF06433 Me-amine-dh_H: Methyl 98.1 0.0063 1.4E-07 53.3 23.6 165 247-436 150-328 (342)
325 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0017 3.7E-08 59.3 21.0 293 44-416 1-345 (353)
326 KOG1275 PAB-dependent poly(A) 98.0 8.9E-05 1.9E-09 71.3 12.7 184 126-369 147-341 (1118)
327 PF08596 Lgl_C: Lethal giant l 98.0 0.0035 7.5E-08 57.5 22.4 177 229-433 82-295 (395)
328 PF06433 Me-amine-dh_H: Methyl 98.0 0.0042 9.1E-08 54.4 21.4 268 36-384 36-333 (342)
329 KOG1645 RING-finger-containing 98.0 0.00027 6E-09 61.6 14.0 78 32-146 190-268 (463)
330 KOG1920 IkappaB kinase complex 98.0 0.00086 1.9E-08 66.9 18.9 242 113-430 69-324 (1265)
331 KOG3617 WD40 and TPR repeat-co 98.0 0.0006 1.3E-08 65.3 17.2 109 116-263 19-132 (1416)
332 COG0823 TolB Periplasmic compo 97.9 0.00018 3.9E-09 66.4 12.9 158 233-431 192-361 (425)
333 PF06977 SdiA-regulated: SdiA- 97.9 0.006 1.3E-07 51.8 20.9 218 113-367 22-247 (248)
334 PF04053 Coatomer_WDAD: Coatom 97.9 0.0013 2.9E-08 61.0 17.6 138 174-371 35-174 (443)
335 PF06977 SdiA-regulated: SdiA- 97.9 0.0041 8.8E-08 52.8 19.0 211 176-425 26-247 (248)
336 PF04053 Coatomer_WDAD: Coatom 97.9 0.00095 2.1E-08 62.0 16.2 144 231-428 30-173 (443)
337 PRK02888 nitrous-oxide reducta 97.8 0.0076 1.6E-07 57.3 21.5 113 241-371 284-405 (635)
338 PRK02888 nitrous-oxide reducta 97.8 0.00079 1.7E-08 63.7 14.4 72 342-429 321-405 (635)
339 KOG3621 WD40 repeat-containing 97.7 0.00025 5.5E-09 66.4 10.3 122 232-371 32-155 (726)
340 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.026 5.6E-07 51.8 21.9 79 337-433 303-403 (415)
341 PF08553 VID27: VID27 cytoplas 97.6 0.022 4.7E-07 56.4 21.9 213 125-371 492-725 (794)
342 PF13360 PQQ_2: PQQ-like domai 97.6 0.0021 4.6E-08 55.2 13.6 144 252-433 1-145 (238)
343 COG0823 TolB Periplasmic compo 97.5 0.0059 1.3E-07 56.6 15.7 185 115-360 195-388 (425)
344 KOG3621 WD40 repeat-containing 97.4 0.0016 3.4E-08 61.3 10.8 122 282-429 33-155 (726)
345 KOG4640 Anaphase-promoting com 97.4 0.0008 1.7E-08 62.4 8.7 75 234-318 21-97 (665)
346 smart00320 WD40 WD40 repeats. 97.4 0.0003 6.6E-09 40.0 4.1 31 33-63 10-40 (40)
347 KOG3617 WD40 and TPR repeat-co 97.4 0.0046 1E-07 59.6 13.5 77 31-144 55-131 (1416)
348 PF08553 VID27: VID27 cytoplas 97.4 0.0095 2.1E-07 58.8 15.9 102 248-370 545-647 (794)
349 PF14583 Pectate_lyase22: Olig 97.4 0.1 2.2E-06 46.9 22.8 167 233-428 187-381 (386)
350 KOG2395 Protein involved in va 97.3 0.018 3.9E-07 52.7 15.7 100 250-370 399-500 (644)
351 PF04841 Vps16_N: Vps16, N-ter 97.3 0.15 3.2E-06 47.6 25.7 34 282-316 216-249 (410)
352 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0015 3.3E-08 38.9 5.6 32 34-65 10-41 (47)
353 cd00216 PQQ_DH Dehydrogenases 97.2 0.22 4.7E-06 47.9 26.4 28 127-154 111-138 (488)
354 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.011 2.4E-07 42.4 10.8 102 115-258 2-110 (111)
355 smart00320 WD40 WD40 repeats. 97.2 0.0011 2.3E-08 37.5 4.7 25 402-426 16-40 (40)
356 PF04841 Vps16_N: Vps16, N-ter 97.1 0.23 5E-06 46.3 23.7 40 342-382 217-257 (410)
357 KOG4640 Anaphase-promoting com 97.0 0.0037 8E-08 58.2 8.5 92 342-449 21-113 (665)
358 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0028 6E-08 37.8 5.1 32 113-146 12-43 (47)
359 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.064 1.4E-06 38.6 12.8 67 285-370 2-71 (111)
360 PF00780 CNH: CNH domain; Int 96.9 0.24 5.2E-06 43.5 22.9 243 124-434 5-261 (275)
361 COG3490 Uncharacterized protei 96.9 0.2 4.2E-06 42.6 17.1 255 115-428 70-348 (366)
362 PF03178 CPSF_A: CPSF A subuni 96.9 0.15 3.2E-06 46.1 18.2 137 254-429 62-203 (321)
363 KOG2079 Vacuolar assembly/sort 96.9 0.0069 1.5E-07 60.1 9.8 103 296-428 100-203 (1206)
364 COG3391 Uncharacterized conser 96.9 0.37 8E-06 44.6 22.0 200 176-433 78-288 (381)
365 PF03178 CPSF_A: CPSF A subuni 96.8 0.34 7.4E-06 43.7 22.6 115 232-370 87-202 (321)
366 COG3490 Uncharacterized protei 96.8 0.069 1.5E-06 45.2 13.7 119 232-370 224-348 (366)
367 PF00780 CNH: CNH domain; Int 96.8 0.21 4.5E-06 43.9 17.8 158 243-433 5-170 (275)
368 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.0081 1.8E-07 55.0 6.8 117 291-427 1-130 (353)
369 KOG2444 WD40 repeat protein [G 96.4 0.013 2.8E-07 47.7 6.9 107 296-431 71-180 (238)
370 COG3391 Uncharacterized conser 96.4 0.38 8.3E-06 44.5 17.6 155 235-433 75-244 (381)
371 COG3204 Uncharacterized protei 96.4 0.52 1.1E-05 40.4 19.1 215 176-425 90-309 (316)
372 PRK13616 lipoprotein LpqB; Pro 96.3 0.53 1.1E-05 46.1 18.5 126 236-375 399-530 (591)
373 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.51 1.1E-05 39.5 25.5 99 47-211 23-121 (354)
374 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.13 2.8E-06 42.9 11.9 111 289-433 17-128 (354)
375 PF10647 Gmad1: Lipoprotein Lp 96.3 0.37 8E-06 41.6 15.6 155 235-420 25-187 (253)
376 PF05694 SBP56: 56kDa selenium 96.3 0.48 1.1E-05 43.3 16.3 120 253-378 221-350 (461)
377 KOG2444 WD40 repeat protein [G 96.2 0.012 2.6E-07 47.9 5.4 65 245-317 70-136 (238)
378 PF10168 Nup88: Nuclear pore c 96.1 0.29 6.2E-06 48.8 15.5 97 342-438 85-189 (717)
379 PF02897 Peptidase_S9_N: Proly 96.1 1.3 2.8E-05 41.7 24.4 32 37-68 125-161 (414)
380 KOG2395 Protein involved in va 96.1 0.17 3.7E-06 46.7 12.6 118 115-262 378-500 (644)
381 PF02897 Peptidase_S9_N: Proly 96.0 1.3 2.9E-05 41.6 19.7 115 235-371 125-261 (414)
382 PRK13616 lipoprotein LpqB; Pro 95.8 1.2 2.6E-05 43.7 18.2 111 176-309 452-564 (591)
383 PF12234 Rav1p_C: RAVE protein 95.8 0.53 1.2E-05 45.7 15.4 116 236-370 32-156 (631)
384 COG3204 Uncharacterized protei 95.7 1.2 2.7E-05 38.2 16.6 179 230-430 82-265 (316)
385 COG3386 Gluconolactonase [Carb 95.7 1.5 3.2E-05 39.0 22.4 109 230-358 159-272 (307)
386 KOG2079 Vacuolar assembly/sort 95.6 0.061 1.3E-06 53.8 8.6 103 244-369 98-202 (1206)
387 PF10168 Nup88: Nuclear pore c 95.6 3 6.5E-05 41.9 24.1 83 234-316 85-182 (717)
388 PF15390 DUF4613: Domain of un 95.3 2.2 4.7E-05 40.6 16.9 71 238-315 117-188 (671)
389 PF12234 Rav1p_C: RAVE protein 95.3 0.69 1.5E-05 45.0 14.3 114 285-428 32-156 (631)
390 PF10313 DUF2415: Uncharacteri 95.3 0.077 1.7E-06 30.6 4.9 33 283-315 1-35 (43)
391 PF08728 CRT10: CRT10; InterP 95.1 2.1 4.5E-05 42.3 17.0 165 245-427 49-245 (717)
392 PF08728 CRT10: CRT10; InterP 95.1 1.5 3.2E-05 43.3 15.8 112 244-369 113-245 (717)
393 PF10313 DUF2415: Uncharacteri 95.0 0.1 2.3E-06 30.1 4.9 31 36-66 1-34 (43)
394 TIGR03606 non_repeat_PQQ dehyd 95.0 3.3 7.1E-05 39.0 18.0 60 234-294 30-90 (454)
395 KOG1897 Damage-specific DNA bi 94.8 5.2 0.00011 40.6 24.2 194 196-430 596-817 (1096)
396 COG5167 VID27 Protein involved 94.8 3.5 7.6E-05 38.4 16.6 98 252-370 535-632 (776)
397 TIGR02604 Piru_Ver_Nterm putat 94.7 1.7 3.6E-05 40.1 15.0 110 234-358 14-140 (367)
398 KOG2377 Uncharacterized conser 94.6 1.4 3.1E-05 40.2 13.2 160 237-430 26-187 (657)
399 KOG3630 Nuclear pore complex, 94.5 0.43 9.4E-06 48.5 10.9 154 234-416 101-261 (1405)
400 KOG1916 Nuclear protein, conta 94.4 0.068 1.5E-06 52.4 5.1 155 204-371 152-324 (1283)
401 cd00216 PQQ_DH Dehydrogenases 94.3 5.5 0.00012 38.4 23.8 113 247-381 303-434 (488)
402 PF15390 DUF4613: Domain of un 94.0 1.6 3.4E-05 41.4 12.7 122 233-370 56-186 (671)
403 PF07995 GSDH: Glucose / Sorbo 93.7 5.2 0.00011 36.3 21.9 26 37-63 3-28 (331)
404 PF10214 Rrn6: RNA polymerase 93.7 9.5 0.00021 39.2 22.7 74 234-314 204-277 (765)
405 PF14870 PSII_BNR: Photosynthe 93.4 5.2 0.00011 35.4 28.6 158 231-425 142-301 (302)
406 KOG4499 Ca2+-binding protein R 93.4 4 8.6E-05 34.0 15.9 134 233-385 108-255 (310)
407 COG3386 Gluconolactonase [Carb 93.3 5.6 0.00012 35.4 22.4 131 234-385 111-256 (307)
408 PF13449 Phytase-like: Esteras 93.3 6.1 0.00013 35.7 17.6 185 234-430 20-251 (326)
409 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.2 8.9 0.00019 37.3 29.3 28 127-154 121-148 (527)
410 KOG3630 Nuclear pore complex, 93.1 3.5 7.5E-05 42.5 14.0 84 198-294 171-255 (1405)
411 TIGR02604 Piru_Ver_Nterm putat 93.1 3.5 7.6E-05 38.0 13.8 63 234-302 72-142 (367)
412 PF14870 PSII_BNR: Photosynthe 93.0 6.1 0.00013 35.0 22.0 151 243-431 113-263 (302)
413 PF07569 Hira: TUP1-like enhan 92.8 0.99 2.1E-05 37.9 8.9 79 290-371 18-96 (219)
414 PHA02713 hypothetical protein; 92.5 5.8 0.00012 39.0 15.0 64 244-316 463-536 (557)
415 KOG4460 Nuclear pore complex, 92.4 2.3 5E-05 39.7 11.0 87 342-433 104-203 (741)
416 PF05096 Glu_cyclase_2: Glutam 92.0 6.6 0.00014 33.7 12.7 116 283-433 45-162 (264)
417 KOG4499 Ca2+-binding protein R 91.9 6.6 0.00014 32.7 17.0 98 236-351 160-263 (310)
418 KOG1897 Damage-specific DNA bi 91.6 18 0.00038 37.1 27.5 120 283-430 488-615 (1096)
419 KOG2280 Vacuolar assembly/sort 91.5 15 0.00032 36.3 15.7 69 234-310 84-152 (829)
420 PF14583 Pectate_lyase22: Olig 91.5 11 0.00023 34.5 20.3 120 281-431 186-331 (386)
421 PF12657 TFIIIC_delta: Transcr 91.3 4.9 0.00011 32.4 11.0 33 113-145 86-122 (173)
422 COG4590 ABC-type uncharacteriz 91.3 12 0.00026 34.5 14.2 168 231-433 218-391 (733)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 91.2 2.1 4.6E-05 39.7 9.8 95 281-382 306-409 (415)
424 PF10647 Gmad1: Lipoprotein Lp 91.0 9.6 0.00021 33.0 20.0 160 37-258 25-192 (253)
425 PF12657 TFIIIC_delta: Transcr 90.8 3 6.5E-05 33.6 9.3 31 400-430 87-123 (173)
426 PLN00033 photosystem II stabil 90.2 16 0.00034 34.0 17.6 155 236-425 241-396 (398)
427 PF10214 Rrn6: RNA polymerase 89.9 26 0.00057 36.1 19.5 139 232-371 78-233 (765)
428 PRK13684 Ycf48-like protein; P 89.6 16 0.00034 33.2 30.3 159 233-427 172-330 (334)
429 PF07569 Hira: TUP1-like enhan 89.5 1.9 4.1E-05 36.3 7.4 72 241-315 18-97 (219)
430 PHA02713 hypothetical protein; 88.9 13 0.00028 36.6 13.7 25 409-433 512-538 (557)
431 TIGR03118 PEPCTERM_chp_1 conse 88.6 16 0.00035 32.0 19.6 233 176-444 27-295 (336)
432 PF05694 SBP56: 56kDa selenium 88.5 13 0.00028 34.5 12.2 36 234-269 312-349 (461)
433 PF07995 GSDH: Glucose / Sorbo 88.4 19 0.00042 32.6 23.6 71 341-423 252-330 (331)
434 KOG4441 Proteins containing BT 88.2 28 0.00061 34.3 20.1 23 409-431 522-549 (571)
435 COG4590 ABC-type uncharacteriz 88.1 2.2 4.7E-05 39.1 7.1 34 234-267 358-391 (733)
436 KOG3616 Selective LIM binding 87.8 31 0.00067 34.3 15.8 35 34-68 13-47 (1636)
437 TIGR02276 beta_rpt_yvtn 40-res 87.3 3 6.4E-05 23.8 5.3 32 351-383 1-34 (42)
438 PF05096 Glu_cyclase_2: Glutam 87.2 18 0.0004 31.1 17.6 162 231-434 42-209 (264)
439 KOG1916 Nuclear protein, conta 87.0 0.39 8.5E-06 47.5 2.0 133 278-429 128-266 (1283)
440 KOG1900 Nuclear pore complex, 86.9 11 0.00023 39.8 11.9 86 342-430 179-274 (1311)
441 KOG2247 WD40 repeat-containing 86.0 0.16 3.4E-06 46.5 -1.0 136 176-358 39-176 (615)
442 COG3823 Glutamine cyclotransfe 85.9 18 0.00039 29.7 11.3 30 125-154 55-86 (262)
443 KOG2280 Vacuolar assembly/sort 85.6 41 0.00088 33.5 17.9 38 342-380 217-255 (829)
444 KOG2377 Uncharacterized conser 84.8 8.2 0.00018 35.6 8.9 38 31-68 62-99 (657)
445 KOG1900 Nuclear pore complex, 83.8 11 0.00025 39.6 10.4 81 233-314 178-273 (1311)
446 KOG4441 Proteins containing BT 83.6 48 0.001 32.8 15.6 27 125-151 380-411 (571)
447 PF11715 Nup160: Nucleoporin N 82.6 9.1 0.0002 37.6 9.4 40 115-154 217-258 (547)
448 PRK10115 protease 2; Provision 82.5 60 0.0013 33.0 18.2 112 234-370 127-255 (686)
449 PF14761 HPS3_N: Hermansky-Pud 82.0 28 0.00061 28.9 11.6 119 245-371 29-164 (215)
450 PF14727 PHTB1_N: PTHB1 N-term 82.0 45 0.00098 31.3 26.2 58 246-313 145-204 (418)
451 COG5290 IkappaB kinase complex 81.9 28 0.0006 34.9 11.6 31 34-64 111-141 (1243)
452 TIGR03606 non_repeat_PQQ dehyd 81.5 50 0.0011 31.4 13.5 62 282-353 29-90 (454)
453 KOG4460 Nuclear pore complex, 81.5 41 0.00088 32.0 12.0 84 234-317 104-202 (741)
454 PF12341 DUF3639: Protein of u 80.6 5.3 0.00012 20.5 3.6 26 36-63 2-27 (27)
455 KOG2247 WD40 repeat-containing 80.5 0.54 1.2E-05 43.2 0.1 141 117-305 39-180 (615)
456 PF07250 Glyoxal_oxid_N: Glyox 79.9 38 0.00082 29.0 11.2 123 287-432 71-201 (243)
457 PF08801 Nucleoporin_N: Nup133 79.6 23 0.0005 33.4 10.7 30 401-430 192-221 (422)
458 PF11715 Nup160: Nucleoporin N 79.4 11 0.00025 36.9 8.9 34 283-317 215-252 (547)
459 PF13449 Phytase-like: Esteras 78.5 52 0.0011 29.8 18.1 126 235-370 86-249 (326)
460 PF03022 MRJP: Major royal jel 78.3 48 0.001 29.3 15.3 154 255-429 35-216 (287)
461 PF14781 BBS2_N: Ciliary BBSom 78.2 27 0.00059 26.4 12.5 112 240-370 5-125 (136)
462 PHA03098 kelch-like protein; P 78.2 72 0.0016 31.3 16.2 26 125-150 342-372 (534)
463 PF14761 HPS3_N: Hermansky-Pud 77.0 42 0.0009 27.9 17.9 76 233-312 134-213 (215)
464 PF01436 NHL: NHL repeat; Int 76.7 7.1 0.00015 20.1 3.6 25 38-62 4-28 (28)
465 TIGR03118 PEPCTERM_chp_1 conse 76.5 54 0.0012 29.0 20.9 58 252-317 220-283 (336)
466 PF07676 PD40: WD40-like Beta 76.3 8.3 0.00018 21.6 4.3 29 281-310 7-38 (39)
467 PLN00033 photosystem II stabil 76.2 68 0.0015 30.0 16.0 113 233-367 280-396 (398)
468 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.2 82 0.0018 30.9 25.7 31 352-383 471-502 (527)
469 PF11635 Med16: Mediator compl 74.4 1.1E+02 0.0024 31.6 16.9 74 233-308 259-345 (753)
470 KOG1983 Tomosyn and related SN 74.1 53 0.0012 34.9 12.1 26 407-432 243-268 (993)
471 COG4257 Vgb Streptogramin lyas 74.0 59 0.0013 28.2 13.9 159 234-431 62-221 (353)
472 KOG1520 Predicted alkaloid syn 72.9 59 0.0013 29.7 10.4 44 301-361 195-238 (376)
473 PF03022 MRJP: Major royal jel 72.3 70 0.0015 28.3 18.5 67 283-360 186-254 (287)
474 KOG1898 Splicing factor 3b, su 72.3 1.3E+02 0.0029 31.5 22.0 36 32-67 579-620 (1205)
475 smart00564 PQQ beta-propeller 70.8 8.7 0.00019 20.4 3.3 22 412-433 8-29 (33)
476 PRK13684 Ycf48-like protein; P 70.7 84 0.0018 28.6 15.7 71 234-312 260-330 (334)
477 PF03088 Str_synth: Strictosid 70.2 8 0.00017 26.9 3.6 43 301-360 33-75 (89)
478 PF14781 BBS2_N: Ciliary BBSom 70.1 46 0.00099 25.3 11.7 70 288-371 4-82 (136)
479 KOG1983 Tomosyn and related SN 69.9 1.6E+02 0.0035 31.5 19.0 32 35-66 35-66 (993)
480 PF12768 Rax2: Cortical protei 69.7 72 0.0015 28.1 10.2 55 253-316 15-75 (281)
481 PF14727 PHTB1_N: PTHB1 N-term 69.3 1E+02 0.0022 29.0 13.6 112 196-316 38-166 (418)
482 PHA03098 kelch-like protein; P 65.9 1.4E+02 0.003 29.3 15.0 23 409-431 487-514 (534)
483 KOG3616 Selective LIM binding 65.7 76 0.0016 31.8 10.1 34 113-148 15-48 (1636)
484 PF02333 Phytase: Phytase; In 64.1 1.2E+02 0.0026 28.0 20.5 113 198-315 174-292 (381)
485 TIGR02608 delta_60_rpt delta-6 63.4 30 0.00065 21.5 4.8 30 37-66 2-36 (55)
486 PF07250 Glyoxal_oxid_N: Glyox 60.6 40 0.00088 28.8 6.8 68 343-420 68-139 (243)
487 PF13570 PQQ_3: PQQ-like domai 59.8 18 0.0004 20.4 3.3 21 409-429 20-40 (40)
488 PHA02790 Kelch-like protein; P 59.7 1.7E+02 0.0037 28.3 16.1 26 125-150 318-345 (480)
489 PF01011 PQQ: PQQ enzyme repea 59.1 22 0.00047 19.9 3.5 22 412-433 2-23 (38)
490 PF14269 Arylsulfotran_2: Aryl 57.9 52 0.0011 29.3 7.4 74 344-428 146-220 (299)
491 PF03088 Str_synth: Strictosid 57.2 44 0.00094 23.3 5.4 44 199-251 31-74 (89)
492 COG5167 VID27 Protein involved 55.0 23 0.0005 33.4 4.7 60 195-262 573-632 (776)
493 PF01731 Arylesterase: Arylest 54.7 33 0.00071 23.8 4.4 29 39-67 57-86 (86)
494 COG4257 Vgb Streptogramin lyas 52.2 1.6E+02 0.0035 25.7 17.2 163 231-430 101-264 (353)
495 KOG3522 Predicted guanine nucl 51.8 1.1E+02 0.0023 31.3 8.7 166 198-417 550-725 (925)
496 COG5290 IkappaB kinase complex 51.8 2.8E+02 0.0062 28.4 13.6 73 284-371 248-325 (1243)
497 KOG1898 Splicing factor 3b, su 50.2 3.4E+02 0.0074 28.8 14.2 111 288-430 939-1050(1205)
498 KOG2714 SETA binding protein S 49.3 1.9E+02 0.0042 27.0 9.3 46 15-68 206-256 (465)
499 PHA02790 Kelch-like protein; P 49.1 2.6E+02 0.0056 27.1 12.8 24 408-431 445-473 (480)
500 PF08801 Nucleoporin_N: Nup133 49.0 2.4E+02 0.0052 26.7 12.9 31 283-314 190-220 (422)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-46 Score=311.98 Aligned_cols=308 Identities=18% Similarity=0.292 Sum_probs=255.7
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccc--------------
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE-------------- 95 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 95 (461)
...+|.++|.|++|+|+|..||+|+.|.++|+||+.+......+ ..+..+..++.++|+.+.+.+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 46689999999999999999999999999999999987644222 235566778888888766554
Q ss_pred -------ccCCCcchhhccccccccceEEEEEee---cCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCC
Q 012535 96 -------FQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (461)
Q Consensus 96 -------~~~h~~~~~~~~~~~~~~~v~~v~~~p---~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (461)
|.+|. ..|++++|-| .+..++|++++.||+|+|||+..+.+......|..
T Consensus 189 g~~~g~~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-------- 248 (480)
T KOG0271|consen 189 GQQIGRALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-------- 248 (480)
T ss_pred CCcccccccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc--------
Confidence 55666 8899999987 35577999999999999999999998888777643
Q ss_pred CccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeC---
Q 012535 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN--- 242 (461)
Q Consensus 166 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--- 242 (461)
+|. ++.|--+|- +++++.|++|++|+ .. ...+.+. +.+|...|+.++++
T Consensus 249 ~VT-------CvrwGG~gl-------------iySgS~DrtIkvw~-a~------dG~~~r~-lkGHahwvN~lalsTdy 300 (480)
T KOG0271|consen 249 SVT-------CVRWGGEGL-------------IYSGSQDRTIKVWR-AL------DGKLCRE-LKGHAHWVNHLALSTDY 300 (480)
T ss_pred ceE-------EEEEcCCce-------------EEecCCCceEEEEE-cc------chhHHHh-hcccchheeeeeccchh
Confidence 344 566655554 49999999999999 21 1233334 38999999999877
Q ss_pred --------CCC-------------------------CEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEE
Q 012535 243 --------SDG-------------------------ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288 (461)
Q Consensus 243 --------~~~-------------------------~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 288 (461)
|.+ +.|++| +|.++.+|+....++++. .+.+|..-|+.+
T Consensus 301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~-------rmtgHq~lVn~V 373 (480)
T KOG0271|consen 301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT-------RMTGHQALVNHV 373 (480)
T ss_pred hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh-------hhhchhhheeeE
Confidence 222 359999 899999999876665543 688999999999
Q ss_pred EEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEE
Q 012535 289 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLW 367 (461)
Q Consensus 289 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vw 367 (461)
.|+||+ +++|+++.|..|++||.++++. +.+|.+|- .+|+.++|+.|.++|++|+ |.++++|
T Consensus 374 ~fSPd~-r~IASaSFDkSVkLW~g~tGk~----lasfRGHv------------~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 374 SFSPDG-RYIASASFDKSVKLWDGRTGKF----LASFRGHV------------AAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred EECCCc-cEEEEeecccceeeeeCCCcch----hhhhhhcc------------ceeEEEEeccCccEEEEcCCCceEEEE
Confidence 999999 9999999999999999999986 56666554 8999999999999999988 6999999
Q ss_pred EccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 368 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 368 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
|+++ .+....+.+|...+ +++.|+|||..+++|+.|..+++|.
T Consensus 437 ~V~t-kKl~~DLpGh~DEV---------------f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 437 DVRT-KKLKQDLPGHADEV---------------FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred Eeee-eeecccCCCCCceE---------------EEEEecCCCceeecCCCceEEEeec
Confidence 9997 88888999999876 5999999999999999999999995
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-47 Score=309.51 Aligned_cols=372 Identities=68% Similarity=1.081 Sum_probs=325.9
Q ss_pred cccCCceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcc
Q 012535 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (461)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (461)
++...+.|+|+|+|+.. +...+-|.++.|..+|.+||||+.+|.|.+|....... .+
T Consensus 5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~e 61 (433)
T KOG1354|consen 5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GE 61 (433)
T ss_pred Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cc
Confidence 44567889999988743 56778899999999999999999999999998654321 27
Q ss_pred ccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccc
Q 012535 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (461)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (461)
+++...++.|++||+|++++++.+.|+.++|.+..+...++..+.|++|++|.+.....+.. ..+..
T Consensus 62 y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~------------ 128 (433)
T KOG1354|consen 62 YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLP------------ 128 (433)
T ss_pred eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-ccccc------------
Confidence 78999999999999999999999999999999888888999999999999999876543330 00000
Q ss_pred cccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE
Q 012535 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (461)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (461)
..+ ..+.-..+++.- +...+......|++.+..+|...|++|.++.|++.++
T Consensus 129 -----------~~~----------------~~~~~~~lr~p~-~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 129 -----------EEG----------------PPGTITSLRLPV-EGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred -----------ccC----------------CCCccceeecee-eccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 000 011112334443 4555666777889999899999999999999999999
Q ss_pred EeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 250 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 250 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
+++|-.|.+|+++-..+.+.++++||..++....-|++..|+|..+++|+..+..|+|++-|+|...+|..+...++.+.
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
++..+.+|.+....|..+.|+++|+|+++-+.-+|++||+....+++.+++.|......++.+|+++++++-+.++|+.+
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 99999999999999999999999999999998999999998889999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCeEEEEecCCCCccceeeccCCCCCc
Q 012535 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMS 445 (461)
Q Consensus 410 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 445 (461)
+.+++||+..+.+++|++..|..+..+++..+.+.+
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~ 376 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMK 376 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCc
Confidence 999999999999999999999988888888877643
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=316.21 Aligned_cols=285 Identities=19% Similarity=0.288 Sum_probs=249.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
.++-+.+|..+.||.|++.||||+.+|.+++|+..... ....|.+|.
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~---------- 217 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT---------- 217 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc----------
Confidence 45678899999999999999999999999999987653 567899999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
+.|.++.|+|..++..+++|+.||++++|++.+......+..|.. .|. .++|+|+|+++
T Consensus 218 --~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~--------RVs-------~VafHPsG~~L---- 276 (459)
T KOG0272|consen 218 --SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA--------RVS-------RVAFHPSGKFL---- 276 (459)
T ss_pred --cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh--------hhe-------eeeecCCCcee----
Confidence 789999999864567899999999999999998776666665532 233 78999999996
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
.+++.|.+-++|| +........ ..||...|.+++|.++|.++++| -|..-+|||++++....
T Consensus 277 --------~TasfD~tWRlWD-~~tk~ElL~-------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im- 339 (459)
T KOG0272|consen 277 --------GTASFDSTWRLWD-LETKSELLL-------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM- 339 (459)
T ss_pred --------eecccccchhhcc-cccchhhHh-------hcccccccceeEecCCCceeeccCccchhheeecccCcEEE-
Confidence 9999999999999 544332221 38999999999999999999999 79999999999877664
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+.+|...|.+|+|+|+| ..||+|+.|++++|||++.... ++++..|. +-|+.|+|
T Consensus 340 -------~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~------------nlVS~Vk~ 395 (459)
T KOG0272|consen 340 -------FLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE----LYTIPAHS------------NLVSQVKY 395 (459)
T ss_pred -------EecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc----ceeccccc------------chhhheEe
Confidence 478899999999999999 9999999999999999998776 67777765 78999999
Q ss_pred cc-CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 350 AR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 350 s~-~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+| .|.+|++++ |++++||...+ ..+++.+.+|++.+ .++.+++|+.++++++.|+++++|.
T Consensus 396 ~p~~g~fL~TasyD~t~kiWs~~~-~~~~ksLaGHe~kV---------------~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 SPQEGYFLVTASYDNTVKIWSTRT-WSPLKSLAGHEGKV---------------ISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCCeEEEEcccCcceeeecCCC-cccchhhcCCccce---------------EEEEeccCCceEEEeccCceeeecc
Confidence 99 788999988 69999999996 89999999999886 5999999999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-42 Score=284.32 Aligned_cols=278 Identities=15% Similarity=0.243 Sum_probs=227.8
Q ss_pred ccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCc
Q 012535 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (461)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (461)
|-.++...+.||. ++|.|++|+| ++..|++|+.|.++|+||+.+.....+.+.|. ..|
T Consensus 103 pvtrCssS~~GH~------------e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~--------~WV 160 (480)
T KOG0271|consen 103 PVTRCSSSIAGHG------------EAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK--------NWV 160 (480)
T ss_pred ccceeccccCCCC------------CcEEEEEecC--CCceEEecCCCceEEeeccCCCCcceeecCCc--------cEE
Confidence 4556777889999 8999999995 68899999999999999999988777777663 335
Q ss_pred cccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC----
Q 012535 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---- 243 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---- 243 (461)
. +++|+|||+.+ ++|+.||.|++|| .+ ..++....+.+|...|++++|.|
T Consensus 161 l-------cvawsPDgk~i------------ASG~~dg~I~lwd----pk---tg~~~g~~l~gH~K~It~Lawep~hl~ 214 (480)
T KOG0271|consen 161 L-------CVAWSPDGKKI------------ASGSKDGSIRLWD----PK---TGQQIGRALRGHKKWITALAWEPLHLV 214 (480)
T ss_pred E-------EEEECCCcchh------------hccccCCeEEEec----CC---CCCcccccccCcccceeEEeecccccC
Confidence 5 89999999996 9999999999999 22 23333333589999999999976
Q ss_pred -CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccc
Q 012535 244 -DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (461)
Q Consensus 244 -~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (461)
..+.|+++ .||.++|||+..+...+ .+.+|...|+|+.|--+| ++++|+.|++|++|+...+.++.
T Consensus 215 p~~r~las~skDg~vrIWd~~~~~~~~--------~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r-- 282 (480)
T KOG0271|consen 215 PPCRRLASSSKDGSVRIWDTKLGTCVR--------TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCR-- 282 (480)
T ss_pred CCccceecccCCCCEEEEEccCceEEE--------EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHH--
Confidence 47789998 79999999998544333 478999999999999776 99999999999999988765431
Q ss_pred cccccccc-------------------------------------------------------------------CCCcc
Q 012535 322 SKLFEEQE-------------------------------------------------------------------APGTR 334 (461)
Q Consensus 322 ~~~~~~~~-------------------------------------------------------------------~~~~~ 334 (461)
.+.+|. ...+.
T Consensus 283 --~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi 360 (480)
T KOG0271|consen 283 --ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI 360 (480)
T ss_pred --hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch
Confidence 111110 00112
Q ss_pred ccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEE
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (461)
....+|..-|+.+.||||++|+|+++ |+.|++||-++ ++.+..|++|-..+ +.++|+.|.++|
T Consensus 361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------YqvawsaDsRLl 424 (480)
T KOG0271|consen 361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQVAWSADSRLL 424 (480)
T ss_pred hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEEEeccCccEE
Confidence 24578999999999999999999998 79999999996 99999999999887 499999999999
Q ss_pred EEecCCCeEEEEecCCCCccceeeccCCCCC
Q 012535 414 ATGSYSNLFRVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 414 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
++|+.|.++++|++++.+.. .-+.+|.+.+
T Consensus 425 VS~SkDsTLKvw~V~tkKl~-~DLpGh~DEV 454 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLK-QDLPGHADEV 454 (480)
T ss_pred EEcCCCceEEEEEeeeeeec-ccCCCCCceE
Confidence 99999999999999987655 5666776654
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-40 Score=260.89 Aligned_cols=298 Identities=14% Similarity=0.231 Sum_probs=239.3
Q ss_pred ccccccceEEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...|++.|+.++..+. .+.|++++.|.++.+|++...... -....+.|.||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~------------------~G~~~r~~~GHs--------- 63 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK------------------YGVPVRRLTGHS--------- 63 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc------------------cCceeeeeeccc---------
Confidence 5579999999999986 568999999999999998765321 233567788998
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|..+..+ +||++.++++.|+++++||+.+++..+.+..|.. .|. +++|+++.+.+
T Consensus 64 ---H~v~dv~~s--~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~--------dVl-------sva~s~dn~qi--- 120 (315)
T KOG0279|consen 64 ---HFVSDVVLS--SDGNFALSASWDGTLRLWDLATGESTRRFVGHTK--------DVL-------SVAFSTDNRQI--- 120 (315)
T ss_pred ---eEecceEEc--cCCceEEeccccceEEEEEecCCcEEEEEEecCC--------ceE-------EEEecCCCcee---
Confidence 669999999 6788999999999999999999987777777643 244 88999999986
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeec-ccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH-AHDYHINSISNNSD--GETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
++|+.|.+|++|+ ....|..+... .+...|.|+.|+|+ ..+|+++ .|++|++||+++-+
T Consensus 121 ---------vSGSrDkTiklwn--------t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 121 ---------VSGSRDKTIKLWN--------TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred ---------ecCCCcceeeeee--------ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 9999999999999 22334433322 33789999999999 6788888 79999999999554
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
... .+.+|.+.++.++++||| .+.++|+.||.+.+||++.++. +++++.. ..|.
T Consensus 184 l~~--------~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~----lysl~a~-------------~~v~ 237 (315)
T KOG0279|consen 184 LRT--------TFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN----LYSLEAF-------------DIVN 237 (315)
T ss_pred hhh--------ccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce----eEeccCC-------------CeEe
Confidence 332 578899999999999999 9999999999999999999876 5666554 6899
Q ss_pred EEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 346 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
+++|+|+--.|+.+.+..|+|||+.+ +..+..++....... ....+. .-++++|++||..|++|-.|+.|++|
T Consensus 238 sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~s----~~~~~~--~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKLDGIGPS----SKAGDP--ICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred eEEecCCceeEeeccCCceEEEeccc-hhhhhhccccccccc----cccCCc--EEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 99999998888888887899999996 777766653322110 000001 11489999999999999999999999
Q ss_pred ecC
Q 012535 426 GCS 428 (461)
Q Consensus 426 ~~~ 428 (461)
.+.
T Consensus 311 qv~ 313 (315)
T KOG0279|consen 311 QVA 313 (315)
T ss_pred Eee
Confidence 875
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.3e-39 Score=256.93 Aligned_cols=285 Identities=19% Similarity=0.343 Sum_probs=231.6
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...+|.+.|.++.|++|.++|++++.||.+.|||.-+.... ..+.-..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s--------- 97 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS--------- 97 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc---------
Confidence 35689999999999999999999999999999998765432 1111122
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc------eeEEeeeecCCCccCCCCCccccccccCcceeecCC
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (461)
..|..++|+|+ ++++++|+.|+...||++.+.+ ..+.+..| .+-+. +..|.+|+
T Consensus 98 ---~WVMtCA~sPS--g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH--------tgylS-------cC~f~dD~ 157 (343)
T KOG0286|consen 98 ---SWVMTCAYSPS--GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH--------TGYLS-------CCRFLDDN 157 (343)
T ss_pred ---eeEEEEEECCC--CCeEEecCcCceeEEEecccccccccceeeeeecCc--------cceeE-------EEEEcCCC
Confidence 66999999964 6799999999999999998542 12222222 22222 45666766
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEc
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNL 261 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~ 261 (461)
.. ++++.|.+..+|| +. ..+....| .+|.+.|.+++++| +++.|++| .|+..++||+
T Consensus 158 ~i-------------lT~SGD~TCalWD-ie------~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 158 HI-------------LTGSGDMTCALWD-IE------TGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred ce-------------EecCCCceEEEEE-cc------cceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 64 9999999999999 42 23344444 89999999999999 89999999 7999999999
Q ss_pred cCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
+.+ .+.+ ++.+|...|++|.|.|+| .-|++|+.|++.|+||+|..+. +..+..... .
T Consensus 217 R~~-~c~q-------tF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~----~a~ys~~~~----------~ 273 (343)
T KOG0286|consen 217 RSG-QCVQ-------TFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQE----LAVYSHDSI----------I 273 (343)
T ss_pred cCc-ceeE-------eecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcE----EeeeccCcc----------c
Confidence 965 4444 688999999999999999 9999999999999999999876 444443321 2
Q ss_pred cceeEEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCC
Q 012535 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (461)
.+|++++||..|++|++| .|.++.+||.-. ++.+..+.+|++-+ .++..+|||.-|++|+.|.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~vg~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERVGVLAGHENRV---------------SCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccc-cceEEEeeccCCee---------------EEEEECCCCcEEEecchhH
Confidence 689999999999999997 469999999986 89999999999876 4999999999999999999
Q ss_pred eEEEEe
Q 012535 421 LFRVFG 426 (461)
Q Consensus 421 ~i~iw~ 426 (461)
.++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-38 Score=271.53 Aligned_cols=283 Identities=19% Similarity=0.353 Sum_probs=238.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
.......|++++|+.+|..||+|+.||.++||+.... +..+|..|.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~------------------------l~~tl~~Hk---------- 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN------------------------LISTLGQHK---------- 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCch------------------------hhhhhhccC----------
Confidence 4445678999999999999999999999999998765 456889999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
++|.++.|+ ..|++|++++.|+++.+||..++...+.+..+..+. . .+.|-.+..
T Consensus 277 --gPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~--------l-------DVdW~~~~~------ 331 (524)
T KOG0273|consen 277 --GPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA--------L-------DVDWQSNDE------ 331 (524)
T ss_pred --CceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc--------c-------ceEEecCce------
Confidence 899999999 678899999999999999999999888888764321 1 345655555
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+++++.|+.|+++. +.. ..+..++ .+|.+.|.++.|+|.+.+|+++ +|++++||........
T Consensus 332 -------F~ts~td~~i~V~k-v~~------~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~-- 394 (524)
T KOG0273|consen 332 -------FATSSTDGCIHVCK-VGE------DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV-- 394 (524)
T ss_pred -------EeecCCCceEEEEE-ecC------CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch--
Confidence 49999999999998 432 2334444 6799999999999999999999 8999999998744433
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCC--------CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHC--------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
..+.+|...|..+.|+|+|+ ..+++++.|++|++||+..+.. +++|..|.
T Consensus 395 ------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~----i~~f~kH~------------ 452 (524)
T KOG0273|consen 395 ------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP----IHTLMKHQ------------ 452 (524)
T ss_pred ------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce----eEeeccCC------------
Confidence 25788999999999999764 4799999999999999999876 66666655
Q ss_pred cceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCC
Q 012535 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (461)
.+|++++|+|+|+|||+|+ ||.|.+|+.++ ++.++.+.+..+ |+.++|+.+|.+|..+-.||
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~----------------Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGG----------------IFELCWNAAGDKLGACASDG 515 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccc-hheeEeecCCCe----------------EEEEEEcCCCCEEEEEecCC
Confidence 7899999999999999998 79999999997 888888876554 35999999999999999999
Q ss_pred eEEEEecC
Q 012535 421 LFRVFGCS 428 (461)
Q Consensus 421 ~i~iw~~~ 428 (461)
.+.+-|++
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99998875
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-38 Score=248.67 Aligned_cols=291 Identities=14% Similarity=0.249 Sum_probs=229.8
Q ss_pred CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCc
Q 012535 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (461)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 127 (461)
-+||+++.|.+||+|...++. +..+++..+ ..|+.+... +++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-----------------------C~rTiqh~d------------sqVNrLeiT--pdk~ 53 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-----------------------CSRTIQHPD------------SQVNRLEIT--PDKK 53 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-----------------------EEEEEecCc------------cceeeEEEc--CCcc
Confidence 489999999999999999886 445555555 679999998 5565
Q ss_pred EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcE
Q 012535 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (461)
Q Consensus 128 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 207 (461)
.|++++ .-.||+||++++....+.....+ ...|. ++.|..+|+.+ ++|++||.+
T Consensus 54 ~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h------~kNVt-------aVgF~~dgrWM------------yTgseDgt~ 107 (311)
T KOG0315|consen 54 DLAAAG-NQHVRLYDLNSNNPNPVATFEGH------TKNVT-------AVGFQCDGRWM------------YTGSEDGTV 107 (311)
T ss_pred hhhhcc-CCeeEEEEccCCCCCceeEEecc------CCceE-------EEEEeecCeEE------------EecCCCceE
Confidence 666655 45799999998775444444332 23344 78999999996 999999999
Q ss_pred EeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceE
Q 012535 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (461)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (461)
+||| ++. ..+.+.+ .|..+|+++..+|+...|++| .+|.|++||+.......+. ++.....|.
T Consensus 108 kIWd-lR~------~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-------iPe~~~~i~ 171 (311)
T KOG0315|consen 108 KIWD-LRS------LSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-------IPEDDTSIQ 171 (311)
T ss_pred EEEe-ccC------cccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-------CCCCCccee
Confidence 9999 544 3344443 567999999999999999999 7999999999855333322 344568899
Q ss_pred EEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEE
Q 012535 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK 365 (461)
Q Consensus 287 ~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~ 365 (461)
+++..|+| .+++.+...|+..+|++-.... ...+ .+..++..|.+-+..+.+|||++|||+++ |.+++
T Consensus 172 sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~----~s~l------~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 172 SLTVMPDG-SMLAAANNKGNCYVWRLLNHQT----ASEL------EPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred eEEEcCCC-cEEEEecCCccEEEEEccCCCc----cccc------eEhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence 99999999 9999999999999999977542 1111 22344677779999999999999999965 79999
Q ss_pred EEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCC
Q 012535 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 366 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
||+.+..-+.-..+++|..++ |+++||.||+||++|+.|+.+++|++..++++ ....+|.++.
T Consensus 241 iwn~~~~~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v-~qy~gh~K~~ 303 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAGKEV-RQYQGHHKAA 303 (311)
T ss_pred EEecCCceeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccCcee-eecCCccccc
Confidence 999986436667788998876 79999999999999999999999999999877 5566665543
No 9
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-40 Score=265.96 Aligned_cols=363 Identities=56% Similarity=0.850 Sum_probs=303.8
Q ss_pred ceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccc
Q 012535 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (461)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (461)
-.|+|+|+|+........+..+.|+++.|...|.|||+|...|+|.+|...... ..++++.+
T Consensus 6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~------------------~ceykf~t 67 (460)
T COG5170 6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY------------------GCEYKFFT 67 (460)
T ss_pred hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc------------------ccchhhhh
Confidence 469999999999988888999999999999999999999999999999876432 24788999
Q ss_pred cccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccccccc
Q 012535 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (461)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (461)
+|++|++||+|++++++.+.|+.+.|.-..+...++..+.|++|++|.+....++-+.+-....
T Consensus 68 eFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~---------------- 131 (460)
T COG5170 68 EFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD---------------- 131 (460)
T ss_pred hhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc----------------
Confidence 9999999999999999999999999996555668999999999999999877655443332211
Q ss_pred CcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCC
Q 012535 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254 (461)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~ 254 (461)
++. +|.+..+ . .-..+++-. +...+......+.+.+...|...++++.|+.+.+.+++++|-
T Consensus 132 -~~~-~~~~g~~------------~---s~~~l~lpr-ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdL 193 (460)
T COG5170 132 -SFH-SPMGGPL------------T---STKELLLPR-LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDL 193 (460)
T ss_pred -ccc-cccCCCc------------C---CHHHhhccc-ccccceEEEeccceeccccceeEeeeeeecCchheeeeccce
Confidence 111 1111110 0 001111111 111222233344555568899999999999999999999999
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
.|.+|+++.....+.++++||..++....-|++..|+|..+.++...+..|+|++-|+|...+|......++...++...
T Consensus 194 rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~ 273 (460)
T COG5170 194 RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV 273 (460)
T ss_pred eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence 99999999999999999999999998899999999999988999999999999999999998888777788877777788
Q ss_pred ccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEE
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (461)
.++.+....|..+.|+++|+|+++-+..+|++||++....++.++..|......+++.|+++.+++-+.+.||.|.+.++
T Consensus 274 ~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~ 353 (460)
T COG5170 274 DFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVL 353 (460)
T ss_pred hhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccc
Confidence 88999999999999999999999999899999999988999999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEEecCC
Q 012535 415 TGSYSNLFRVFGCSE 429 (461)
Q Consensus 415 s~~~dg~i~iw~~~~ 429 (461)
+|+..+..-+|-..+
T Consensus 354 sgsy~NNfgiyp~~s 368 (460)
T COG5170 354 SGSYSNNFGIYPTDS 368 (460)
T ss_pred ccccccceeeecccc
Confidence 999999988887554
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=268.11 Aligned_cols=256 Identities=17% Similarity=0.236 Sum_probs=218.5
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCC--Ccccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG--GCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g--~~~~~~~ 190 (461)
.+|..+.|+ .|+..|++|+.+|.+++|+..+......+..|.. .+. ++.|+|.. ..
T Consensus 176 rPis~~~fS--~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~--------~v~-------~~~fhP~~~~~~----- 233 (459)
T KOG0272|consen 176 RPISGCSFS--RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS--------RVG-------AAVFHPVDSDLN----- 233 (459)
T ss_pred CcceeeEee--cCCCeEEEeecCCceeEeecCCcceeEEEecccc--------cee-------eEEEccCCCccc-----
Confidence 679999999 6788999999999999999998877777776632 344 67888873 34
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+++|+.||.+++|+ +... .+... +.+|...|..++|+|+|++|+++ .|.+-++||+++.....
T Consensus 234 -------lat~s~Dgtvklw~-~~~e------~~l~~-l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL- 297 (459)
T KOG0272|consen 234 -------LATASADGTVKLWK-LSQE------TPLQD-LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL- 297 (459)
T ss_pred -------eeeeccCCceeeec-cCCC------cchhh-hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-
Confidence 59999999999999 4332 22222 38999999999999999999999 79999999999877664
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
..+||...|.+++|.|+| .++++|+.|..-+|||+++++. +..+. +|...|.+++|
T Consensus 298 -------~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~----im~L~------------gH~k~I~~V~f 353 (459)
T KOG0272|consen 298 -------LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRC----IMFLA------------GHIKEILSVAF 353 (459)
T ss_pred -------hhcccccccceeEecCCC-ceeeccCccchhheeecccCcE----EEEec------------ccccceeeEeE
Confidence 478999999999999999 9999999999999999999986 44444 45589999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec-CCCEEEEecCCCeEEEEec
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~ 427 (461)
+|+|..||+|+ |++++|||++. ...+.++.+|.+.+. .+.|+| .|.+|+|++.|++++||.-
T Consensus 354 sPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS---------------~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 354 SPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVS---------------QVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred CCCceEEeecCCCCcEEEeeecc-cccceecccccchhh---------------heEecccCCeEEEEcccCcceeeecC
Confidence 99999999976 79999999996 788999999999874 899999 6889999999999999999
Q ss_pred CCCCccceeeccCCCCCccc
Q 012535 428 SEGSAESTTLEASKNPMSLF 447 (461)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~ 447 (461)
.+.++. ..+.+|...+-..
T Consensus 418 ~~~~~~-ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 418 RTWSPL-KSLAGHEGKVISL 436 (459)
T ss_pred CCcccc-hhhcCCccceEEE
Confidence 988777 6888888766543
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-36 Score=247.46 Aligned_cols=285 Identities=16% Similarity=0.280 Sum_probs=241.4
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|..+|+.+-|+|+-..+++++.|++|++||..+++ +...++||+
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----------------------~e~~LrGHt---------- 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----------------------LERSLRGHT---------- 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----------------------hhhhhhccc----------
Confidence 45699999999999999999999999999999999876 567899999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC-ceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+.|..|+|+ ..|.++++++.|=.+++||..+. ++.+....+.+ .+. ++.|.|.|.++
T Consensus 151 --~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h--------~vS-------~V~f~P~gd~i--- 208 (406)
T KOG0295|consen 151 --DSVFDISFD--ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH--------GVS-------SVFFLPLGDHI--- 208 (406)
T ss_pred --cceeEEEEe--cCccEEEecCCccchhheeHHHHHHHHHHhcCccc--------cee-------eEEEEecCCee---
Confidence 779999999 56889999999999999999863 33333333322 122 77899998875
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
++++.|.+|+.|+ + ....|.+.+ .+|...|..++.+.||.+++++ .|.+|++|-+.+.+...
T Consensus 209 ---------lS~srD~tik~We-~------~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 209 ---------LSCSRDNTIKAWE-C------DTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred ---------eecccccceeEEe-c------ccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 9999999999999 3 235566666 8999999999999999999999 79999999998654332
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCC--------------CCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPT--------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~--------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
.+.+|...|.+++|-|. +..++++++.|++|++||+.++.. +.++.+|.
T Consensus 272 --------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~ghd----- 334 (406)
T KOG0295|consen 272 --------ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVGHD----- 334 (406)
T ss_pred --------hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE----EEEEeccc-----
Confidence 36678899999999763 125899999999999999999976 67777765
Q ss_pred ccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEE
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (461)
+.|..++|+|.|+||+++. |+++++||+++ .+++.++..|+..+ .++.|+.+..++
T Consensus 335 -------nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hfv---------------t~lDfh~~~p~V 391 (406)
T KOG0295|consen 335 -------NWVRGVAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHFV---------------TSLDFHKTAPYV 391 (406)
T ss_pred -------ceeeeeEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCccee---------------EEEecCCCCceE
Confidence 8999999999999999965 59999999996 99999999999887 489999999999
Q ss_pred EEecCCCeEEEEec
Q 012535 414 ATGSYSNLFRVFGC 427 (461)
Q Consensus 414 ~s~~~dg~i~iw~~ 427 (461)
++|+-|..+++|..
T Consensus 392 vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 392 VTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccccceeeeeec
Confidence 99999999999975
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.7e-37 Score=256.80 Aligned_cols=282 Identities=16% Similarity=0.295 Sum_probs=228.5
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
-...|..+.|.|+|+.|++|+..|.+.+|+..+ +.+...++.|. .
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHD------------s 139 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHD------------S 139 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhc------------c
Confidence 345799999999999999999999999999743 23556788998 8
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
+|.++.|+ .++.++++|+.+|.|++|+..-...+.....+ ...|. .++|+|+...
T Consensus 140 ~Vr~m~ws--~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh--------~eaIR-------dlafSpnDsk-------- 194 (464)
T KOG0284|consen 140 PVRTMKWS--HNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH--------AEAIR-------DLAFSPNDSK-------- 194 (464)
T ss_pred cceeEEEc--cCCCEEEEcCCCceEEecccchhhhHHhhHhh--------hhhhh-------eeccCCCCce--------
Confidence 89999999 67889999999999999998766544433332 12344 7899987665
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+++++.||.|+||| ... .+..+. +.+|...|.+++|+|...+++++ .|..|++||.+++....
T Consensus 195 ----F~t~SdDg~ikiWd-f~~------~kee~v-L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---- 258 (464)
T KOG0284|consen 195 ----FLTCSDDGTIKIWD-FRM------PKEERV-LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---- 258 (464)
T ss_pred ----eEEecCCCeEEEEe-ccC------Cchhhe-eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh----
Confidence 49999999999999 222 111222 38999999999999999999999 79999999999776654
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
++.+|+..|..+.|+|++ ++|++++.|..++++|+++-+. ++++.+|. ..|+++.|+|-
T Consensus 259 ----tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE----l~~~r~Hk------------kdv~~~~WhP~ 317 (464)
T KOG0284|consen 259 ----TLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE----LFTYRGHK------------KDVTSLTWHPL 317 (464)
T ss_pred ----hhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHH----HHHhhcch------------hhheeeccccc
Confidence 678899999999999999 9999999999999999995543 56666665 78999999995
Q ss_pred C-CEEEEe-cCCeEEEEEccCCCCCeeEE-eeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 353 G-RHILSR-DYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 353 g-~~l~s~-~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
. .+|++| .||.|..|.+.. .+++..+ .+|... ||+++|+|-|.+|++|+.|..+++|.-.
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~-~~p~~~i~~AHd~~---------------iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGL-EEPLGEIPPAHDGE---------------IWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cccceeeccCCCceEEEeccc-cccccCCCcccccc---------------eeeeeccccceeEeecCCCcceeeeccC
Confidence 4 455554 589999999984 4554444 355554 3799999999999999999999999764
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-36 Score=273.85 Aligned_cols=263 Identities=20% Similarity=0.317 Sum_probs=211.6
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcc--cccccc-----ccc--ccCCccccccccccCCCcchhhc
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR--RDLEMM-----DYS--MSRHPEFRYKTEFQSHEPEFDYL 106 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~--~~~~~~-----~~~--~~~~~~~~~~~~~~~h~~~~~~~ 106 (461)
..++|..|++|+.+||.|-.|..|++|.+...+... .. ..+... +.. +--....-...++.||.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-LKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhcc-ccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 468999999999999999999999999998543210 00 001100 000 00001112233477888
Q ss_pred cccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
++|....|+ |+.++|++++.|+++|+|.+.+..+.-
T Consensus 452 ------GPVyg~sFs--Pd~rfLlScSED~svRLWsl~t~s~~V------------------------------------ 487 (707)
T KOG0263|consen 452 ------GPVYGCSFS--PDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------------------ 487 (707)
T ss_pred ------Cceeeeeec--ccccceeeccCCcceeeeecccceeEE------------------------------------
Confidence 999999999 557799999999999999987654211
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
. ..||..+|.++.|+|.|-+||++ .|++-++|......
T Consensus 488 ----------------------------------------~-y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 488 ----------------------------------------I-YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred ----------------------------------------E-ecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 1 26888999999999999999999 79999999988644
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
... .+.+|.+.|.|+.|+|+. .++++|+.|.++|+||..++.. ++.|.+| .++|.
T Consensus 527 PlR--------ifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----VRiF~GH------------~~~V~ 581 (707)
T KOG0263|consen 527 PLR--------IFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----VRIFTGH------------KGPVT 581 (707)
T ss_pred chh--------hhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----EEEecCC------------CCceE
Confidence 332 467899999999999998 9999999999999999999876 5555554 48999
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
+++|||+|++|++|+ |+.|.+||+.+ +.++..+.+|.+.+ .++.|+.||..||+|+.|+.|++
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEE
Confidence 999999999999987 59999999996 89999999997765 49999999999999999999999
Q ss_pred EecCCCC
Q 012535 425 FGCSEGS 431 (461)
Q Consensus 425 w~~~~~~ 431 (461)
||+..-.
T Consensus 646 WD~~~~~ 652 (707)
T KOG0263|consen 646 WDLTKVI 652 (707)
T ss_pred EEchhhc
Confidence 9998543
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=238.27 Aligned_cols=292 Identities=15% Similarity=0.189 Sum_probs=234.1
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|..+.|+|+|.+||+|+.|..|.+|++..... -...+.+|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs---------- 90 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS---------- 90 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc----------
Confidence 447999999999999999999999999999999776543 344577998
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
++|..+.|. .|+..+++++.|++|+.||+++|+..+....+.. .+. ++.-..-|..+
T Consensus 91 --gAVM~l~~~--~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~--------~vN-------s~~p~rrg~~l---- 147 (338)
T KOG0265|consen 91 --GAVMELHGM--RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS--------FVN-------SLDPSRRGPQL---- 147 (338)
T ss_pred --ceeEeeeec--cCCCEEEEecCCceEEEEecccceeeehhccccc--------eee-------ecCccccCCeE----
Confidence 899999999 6788999999999999999999988877666532 122 22322233332
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+.+++.|+++++|| ++..+.. ++ ......++++.|...+..+.+| -|+.|++||++......
T Consensus 148 -------v~SgsdD~t~kl~D-~R~k~~~------~t--~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~- 210 (338)
T KOG0265|consen 148 -------VCSGSDDGTLKLWD-IRKKEAI------KT--FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY- 210 (338)
T ss_pred -------EEecCCCceEEEEe-ecccchh------hc--cccceeEEEEEecccccceeeccccCceeeeccccCcceE-
Confidence 57899999999999 5433321 11 1234678899999999999998 79999999998666554
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+.+|.+.|+.+..+|+| ..+.+-+.|.++++||++......+.+..+.++... .......++|
T Consensus 211 -------~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn--------feknlL~csw 274 (338)
T KOG0265|consen 211 -------TLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN--------FEKNLLKCSW 274 (338)
T ss_pred -------EeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh--------hhhhcceeec
Confidence 578999999999999999 999999999999999998765444445555554311 1133567899
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+|+++++.+|+ |..+++||... ...+..+.+|.+.++ .+.|+|...+|.+++.|.+|++=.
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn---------------~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSVN---------------EVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cCCCCccccccccceEEEeeccc-ccEEEEcCCcceeEE---------------EeeecCCCcEEEEeccCceeEeec
Confidence 99999999986 79999999985 789999999999874 999999999999999999998743
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-35 Score=235.68 Aligned_cols=276 Identities=17% Similarity=0.254 Sum_probs=225.1
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (461)
....|++|. ..|.++.|+ +|.+++++++.||.+.|||.-+......++.. ...|.
T Consensus 47 ~rr~LkGH~------------~Ki~~~~ws--~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVM--- 101 (343)
T KOG0286|consen 47 TRRTLKGHL------------NKIYAMDWS--TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVM--- 101 (343)
T ss_pred eEEEecccc------------cceeeeEec--CCcCeEEeeccCCeEEEEEcccccceeEEecC--------ceeEE---
Confidence 346789999 889999999 67889999999999999998776555544443 33455
Q ss_pred cccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe
Q 012535 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (461)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (461)
..+|+|.|..+ +.|+-|+...||+ +...+........+. +.+|.+.+.++.|-+|+.+|.++
T Consensus 102 ----tCA~sPSg~~V------------AcGGLdN~Csiy~-ls~~d~~g~~~v~r~-l~gHtgylScC~f~dD~~ilT~S 163 (343)
T KOG0286|consen 102 ----TCAYSPSGNFV------------ACGGLDNKCSIYP-LSTRDAEGNVRVSRE-LAGHTGYLSCCRFLDDNHILTGS 163 (343)
T ss_pred ----EEEECCCCCeE------------EecCcCceeEEEe-cccccccccceeeee-ecCccceeEEEEEcCCCceEecC
Confidence 66999999986 9999999999999 664433333333344 48999999999999866544444
Q ss_pred CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
.|.++.+||+++++... .+.+|.+.|.++.++|..++.+++|+-|+..+|||+|.+.. .++|.+|+
T Consensus 164 GD~TCalWDie~g~~~~--------~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c----~qtF~ghe-- 229 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQ--------VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC----VQTFEGHE-- 229 (343)
T ss_pred CCceEEEEEcccceEEE--------EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce----eEeecccc--
Confidence 89999999999777654 47899999999999993349999999999999999999875 56776665
Q ss_pred CccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
..|++++|.|+|.-+++|+| ++.++||++. .+.+..+. |.. .+.+|.+++||..|
T Consensus 230 ----------sDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys-~~~------------~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 230 ----------SDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYS-HDS------------IICGITSVAFSKSG 285 (343)
T ss_pred ----------cccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeec-cCc------------ccCCceeEEEcccc
Confidence 88999999999999999986 9999999996 77777776 322 23456799999999
Q ss_pred CEEEEecCCCeEEEEecCCCCccceeeccCCCCCccccc
Q 012535 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLH 449 (461)
Q Consensus 411 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 449 (461)
++|.+|..|..+.+||.-.++.. ..+.+|...+.....
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~v-g~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERV-GVLAGHENRVSCLGV 323 (343)
T ss_pred cEEEeeecCCceeEeeccccceE-EEeeccCCeeEEEEE
Confidence 99999999999999999888666 688899988776544
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=244.03 Aligned_cols=298 Identities=15% Similarity=0.302 Sum_probs=237.5
Q ss_pred eeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccc
Q 012535 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (461)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (461)
.|++..+ ..+|.+.|.|+++.|.+.++++|+.|++|+|||+.+++ +..+
T Consensus 140 pwKl~rV--------i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----------------------Lklt 188 (460)
T KOG0285|consen 140 PWKLYRV--------ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----------------------LKLT 188 (460)
T ss_pred cceehhh--------hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----------------------EEEe
Confidence 3666665 34799999999999999999999999999999999886 5678
Q ss_pred ccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccC
Q 012535 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (461)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (461)
+.||- ..|..+++|+. -.|+++++.|+.|+.||++.++.++....|. +.|+
T Consensus 189 ltGhi------------~~vr~vavS~r--HpYlFs~gedk~VKCwDLe~nkvIR~YhGHl--------S~V~------- 239 (460)
T KOG0285|consen 189 LTGHI------------ETVRGVAVSKR--HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL--------SGVY------- 239 (460)
T ss_pred ecchh------------heeeeeeeccc--CceEEEecCCCeeEEEechhhhhHHHhcccc--------ceeE-------
Confidence 89998 78999999964 4599999999999999999998877666553 3355
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
+++.+|.-..+ ++|+.|..+++|| ++.... ... +.||...|.++.+.|....+++| -|+
T Consensus 240 ~L~lhPTldvl------------~t~grDst~RvWD-iRtr~~------V~~-l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 240 CLDLHPTLDVL------------VTGGRDSTIRVWD-IRTRAS------VHV-LSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred EEeccccceeE------------EecCCcceEEEee-ecccce------EEE-ecCCCCcceeEEeecCCCceEEecCCc
Confidence 67778877764 9999999999999 544332 222 48999999999999988889999 799
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
+|++||++.++... ++..|...+++++.+|.. ..||+++.|. |+-|++..+.. +..+.+|+
T Consensus 300 tvrlWDl~agkt~~--------tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g~f----~~nlsgh~----- 360 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMI--------TLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEGEF----LQNLSGHN----- 360 (460)
T ss_pred eEEEeeeccCceeE--------eeecccceeeEEecCCch-hhhhccCCcc-ceeccCCccch----hhcccccc-----
Confidence 99999999777654 466799999999999998 8899888776 89999988876 34455554
Q ss_pred ccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEE
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (461)
..|++++...|| ++++|+| |.+.+||.++ +...+..+.-..+.. -+.-..|++.+|...|..|
T Consensus 361 -------~iintl~~nsD~-v~~~G~dng~~~fwdwks-g~nyQ~~~t~vqpGS-------l~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 361 -------AIINTLSVNSDG-VLVSGGDNGSIMFWDWKS-GHNYQRGQTIVQPGS-------LESEAGIFASCFDKTGSRL 424 (460)
T ss_pred -------ceeeeeeeccCc-eEEEcCCceEEEEEecCc-CcccccccccccCCc-------cccccceeEEeecccCceE
Confidence 789999998776 5666666 9999999996 554444422111100 0111235689999999999
Q ss_pred EEecCCCeEEEEecC
Q 012535 414 ATGSYSNLFRVFGCS 428 (461)
Q Consensus 414 ~s~~~dg~i~iw~~~ 428 (461)
++|..|.+|++|.-+
T Consensus 425 it~eadKtIk~~keD 439 (460)
T KOG0285|consen 425 ITGEADKTIKMYKED 439 (460)
T ss_pred EeccCCcceEEEecc
Confidence 999999999999755
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-34 Score=249.41 Aligned_cols=314 Identities=16% Similarity=0.294 Sum_probs=232.7
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccccc---CCCcchhhcccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYLKSL 109 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~~~~ 109 (461)
.|..-|.|+.|+|||.++|+++.||.|.|||=.+++.+ .++. +|+
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-----------------------g~l~~~~aHk--------- 235 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-----------------------GELEDSDAHK--------- 235 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-----------------------EEecCCCCcc---------
Confidence 68899999999999999999999999999998888743 3444 777
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+.|.+++|+ ||+..+++++.|.+++|||+.++++.+.......-. ...+ +.-
T Consensus 236 ---GsIfalsWs--PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~----dqqv--------G~l----------- 287 (603)
T KOG0318|consen 236 ---GSIFALSWS--PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE----DQQV--------GCL----------- 287 (603)
T ss_pred ---ccEEEEEEC--CCCceEEEecCCceEEEEEeeccceEEEeecCCchh----ceEE--------EEE-----------
Confidence 889999999 678899999999999999999998877665432100 0000 111
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+..+.|++.+.+|.|.+++ ....+ ..+. ..+|...|+++..++++.+|.+| .||.|.-|+..++....
T Consensus 288 ---Wqkd~lItVSl~G~in~ln-~~d~~------~~~~-i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 288 ---WQKDHLITVSLSGTINYLN-PSDPS------VLKV-ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred ---EeCCeEEEEEcCcEEEEec-ccCCC------hhhe-ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 2234469999999999988 33322 2233 38999999999999999999999 79999999987542110
Q ss_pred ------------------------------eeecc---------------CCCC--------------------CC----
Q 012535 269 ------------------------------NIVDV---------------KPAN--------------------ME---- 279 (461)
Q Consensus 269 ------------------------------~~~~~---------------~~~~--------------------~~---- 279 (461)
+.+.+ .|.. +.
T Consensus 357 ~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~ 436 (603)
T KOG0318|consen 357 LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK 436 (603)
T ss_pred cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc
Confidence 00000 0000 00
Q ss_pred ----CCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCE
Q 012535 280 ----DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (461)
Q Consensus 280 ----~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~ 355 (461)
...-...+++++|++ ..++.|+.|+.|+||.+....+++. . .+..|.++|++++||||+.|
T Consensus 437 ~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee--~------------~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 437 VSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEE--A------------KLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred ceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccce--e------------eeecccCCceEEEECCCCcE
Confidence 011234688899998 8999999999999999988664321 1 22334589999999999999
Q ss_pred EEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccc
Q 012535 356 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (461)
Q Consensus 356 l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 434 (461)
||+++- +.+.+||+.+.......+..|...+ .+++|+|+..++|+|+-|..|.||+++......
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI---------------~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKI---------------NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeE---------------EEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 999985 9999999986333333444566654 499999999999999999999999999766554
Q ss_pred eeeccCCCCCccc
Q 012535 435 TTLEASKNPMSLF 447 (461)
Q Consensus 435 ~~~~~~~~~~~~~ 447 (461)
....+|...+...
T Consensus 567 ~iknAH~~gVn~v 579 (603)
T KOG0318|consen 567 IIKNAHLGGVNSV 579 (603)
T ss_pred EeccccccCceeE
Confidence 5556666655443
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.3e-36 Score=257.64 Aligned_cols=296 Identities=20% Similarity=0.297 Sum_probs=240.8
Q ss_pred cCCcccccccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcch
Q 012535 25 ERTAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF 103 (461)
Q Consensus 25 ~~~~~~~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 103 (461)
++.....-+|+..|+++.|.| .+.+|++|+.|+.|+||++-+.. +++++|.+|.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------------~~lrtf~gH~--- 258 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------------RCLRTFKGHR--- 258 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------------ceehhhhcch---
Confidence 344445668999999999999 89999999999999999987632 4788999999
Q ss_pred hhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCC
Q 012535 104 DYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (461)
Q Consensus 104 ~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (461)
.+|..++|+ .+|..|++++.|+.|++||+++|++...+..... +.++.|+|++
T Consensus 259 ---------k~Vrd~~~s--~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~----------------~~cvkf~pd~ 311 (503)
T KOG0282|consen 259 ---------KPVRDASFN--NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKV----------------PTCVKFHPDN 311 (503)
T ss_pred ---------hhhhhhhcc--ccCCeeeeeecceeeeeeccccceEEEEEecCCC----------------ceeeecCCCC
Confidence 889999999 6789999999999999999999998877665432 2288999999
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEcc
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (461)
..+ +++|+.|+.|+.|| ++..+... .+ ..|-+.|..+.|-+++..++++ +|+.+++|+.+
T Consensus 312 ~n~-----------fl~G~sd~ki~~wD-iRs~kvvq------eY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 312 QNI-----------FLVGGSDKKIRQWD-IRSGKVVQ------EY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred CcE-----------EEEecCCCcEEEEe-ccchHHHH------HH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence 543 68999999999999 65544322 22 6788999999999999999999 89999999998
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
.+-....+ .........++..+|++ .++++-+.|..|.++.+...-.. .....|++|... +
T Consensus 373 ~~v~ik~i-------~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~va----------G 433 (503)
T KOG0282|consen 373 IPVPIKNI-------ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHSVA----------G 433 (503)
T ss_pred CCccchhh-------cchhhccCcceecCCCC-CeehhhccCceEEEEeccccccc-CHhhhhcceecc----------C
Confidence 65443322 22234456789999999 99999999999999987543221 113455565533 5
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC-CEEEEecCCC
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSN 420 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg 420 (461)
.-..+.|||||++|++|+ +|.+.+||.++ .+.+..++.|.... ..+.|+|.. ..+|+++.||
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~c---------------i~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPC---------------IGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcce---------------EEEEecCCCcceeEecccCc
Confidence 577899999999999997 69999999997 89999999997665 489999974 5899999999
Q ss_pred eEEEEe
Q 012535 421 LFRVFG 426 (461)
Q Consensus 421 ~i~iw~ 426 (461)
.|++|+
T Consensus 498 ~Ikiwd 503 (503)
T KOG0282|consen 498 LIKIWD 503 (503)
T ss_pred eeEecC
Confidence 999996
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.5e-35 Score=249.31 Aligned_cols=302 Identities=18% Similarity=0.290 Sum_probs=229.9
Q ss_pred ccccccceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.+.|+.+|.+.+|+|--. .|++|+.|-..++|++............+ +-...+. .++.
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-------------rh~~~~~--------~~s~ 232 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-------------RHCIREG--------GKSV 232 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-------------hhhhhhh--------cccC
Confidence 345999999999999555 99999999999999987521110000000 0000011 1222
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+....|++++|+ .+|..|++|+.||.+++|+...+.. ..+..| .++|. ++.|+.+|.++
T Consensus 233 ~~nkdVT~L~Wn--~~G~~LatG~~~G~~riw~~~G~l~-~tl~~H--------kgPI~-------slKWnk~G~yi--- 291 (524)
T KOG0273|consen 233 PSNKDVTSLDWN--NDGTLLATGSEDGEARIWNKDGNLI-STLGQH--------KGPIF-------SLKWNKKGTYI--- 291 (524)
T ss_pred CccCCcceEEec--CCCCeEEEeecCcEEEEEecCchhh-hhhhcc--------CCceE-------EEEEcCCCCEE---
Confidence 333669999999 7899999999999999999876543 333333 56677 88999999986
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
++++.|+++.+|| . ........+ .-|..+-.++.|-.+.. |+++ .|+.|+++.+....+.
T Consensus 292 ---------lS~~vD~ttilwd-~------~~g~~~q~f-~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~kv~~~~P~- 352 (524)
T KOG0273|consen 292 ---------LSGGVDGTTILWD-A------HTGTVKQQF-EFHSAPALDVDWQSNDE-FATSSTDGCIHVCKVGEDRPV- 352 (524)
T ss_pred ---------EeccCCccEEEEe-c------cCceEEEee-eeccCCccceEEecCce-EeecCCCceEEEEEecCCCcc-
Confidence 9999999999999 2 223333333 55666667788876654 5555 8999999999844433
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
. ++.+|.+.|.++.|+|.+ .+|++++.|++++||.+..... ...+..| ...|..+.
T Consensus 353 ~-------t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~----~~~l~~H------------skei~t~~ 408 (524)
T KOG0273|consen 353 K-------TFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS----VHDLQAH------------SKEIYTIK 408 (524)
T ss_pred e-------eeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc----hhhhhhh------------ccceeeEe
Confidence 2 577899999999999999 9999999999999999877654 3444444 47899999
Q ss_pred EccCC---------CEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 349 FARNG---------RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 349 ~s~~g---------~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
|+|+| ..|+++ .|++|++||+.. +.++..|..|..++ ++++|+|+|++||+|+.
T Consensus 409 wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pV---------------ysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 409 WSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPV---------------YSVAFSPNGRYLASGSL 472 (524)
T ss_pred ecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCce---------------EEEEecCCCcEEEecCC
Confidence 99954 356665 579999999996 99999999999887 49999999999999999
Q ss_pred CCeEEEEecCCCCcc
Q 012535 419 SNLFRVFGCSEGSAE 433 (461)
Q Consensus 419 dg~i~iw~~~~~~~~ 433 (461)
||.|.+|+.++++..
T Consensus 473 dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLV 487 (524)
T ss_pred CCeeEeccccchhee
Confidence 999999999998655
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.9e-34 Score=227.45 Aligned_cols=291 Identities=14% Similarity=0.196 Sum_probs=224.2
Q ss_pred ccccccceEEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccc-cCCCcchhhccc
Q 012535 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 108 (461)
..+|.+.|..++|+|- |..||+++.|..|+||++..+. .+.+...+ .+|+
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk-------- 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK-------- 61 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch--------
Confidence 3468999999999997 8999999999999999987532 12233333 3677
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|.+++|+| .|++|++|+.|.++.||.-..++...+.....++. .|. +++|+++|.++
T Consensus 62 ----rsVRsvAwsp--~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn------EVK-------~Vaws~sG~~L-- 120 (312)
T KOG0645|consen 62 ----RSVRSVAWSP--HGRYLASASFDATVVIWKKEDGEFECVATLEGHEN------EVK-------CVAWSASGNYL-- 120 (312)
T ss_pred ----heeeeeeecC--CCcEEEEeeccceEEEeecCCCceeEEeeeecccc------cee-------EEEEcCCCCEE--
Confidence 7799999995 57899999999999999988777666555554432 233 88999999996
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
++|+.|+.|.+|. +. ......|...+ +.|...|..+.|+|...+|+++ .|++|++|+-.. ...
T Consensus 121 ----------ATCSRDKSVWiWe-~d---eddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-ddd 184 (312)
T KOG0645|consen 121 ----------ATCSRDKSVWIWE-ID---EDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDD 184 (312)
T ss_pred ----------EEeeCCCeEEEEE-ec---CCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCC
Confidence 9999999999999 33 33446676665 9999999999999999999999 899999998763 222
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
.... .++.+|...|.+++|+|.| ..|++++.|++++||.+...-. . .|...+..+
T Consensus 185 W~c~----~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~~------~--------------~~sr~~Y~v 239 (312)
T KOG0645|consen 185 WECV----QTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDLS------G--------------MHSRALYDV 239 (312)
T ss_pred eeEE----EEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCcc------h--------------hcccceEee
Confidence 1111 2688899999999999999 8999999999999998663211 0 123679999
Q ss_pred EEccCCCEEEE-ecCCeEEEEEccCC-CCCee-----EEeeccCccccccccccCCCccceeeEEEecC-CCEEEEecCC
Q 012535 348 KFARNGRHILS-RDYMTLKLWDINMD-SGPVA-----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYS 419 (461)
Q Consensus 348 ~~s~~g~~l~s-~~d~~i~vwd~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d 419 (461)
.|. + ..|++ |+|+.|++|.-... ..+.. .-..|+.. |.+++|+|. ...|++|++|
T Consensus 240 ~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---------------VNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 240 PWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---------------VNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred eec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc---------------cceEEEcCCCCCceeecCCC
Confidence 998 4 46777 46899999987631 11211 12234433 349999995 7799999999
Q ss_pred CeEEEEecC
Q 012535 420 NLFRVFGCS 428 (461)
Q Consensus 420 g~i~iw~~~ 428 (461)
|.|++|.+.
T Consensus 303 G~v~~W~l~ 311 (312)
T KOG0645|consen 303 GIVNFWELE 311 (312)
T ss_pred ceEEEEEec
Confidence 999999875
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-35 Score=264.24 Aligned_cols=376 Identities=16% Similarity=0.209 Sum_probs=253.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcc----hhhc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE----FDYL 106 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----~~~~ 106 (461)
...|+++|.-|+|+|.|.+||+|+.||.+++||+..+...... ..+++...++.|+|......-..+.... +++.
T Consensus 101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence 3359999999999999999999999999999999876543111 2234455567777765542221111100 0000
Q ss_pred ------c-ccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeee----------ec-------------
Q 012535 107 ------K-SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW----------NV------------- 156 (461)
Q Consensus 107 ------~-~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----------~~------------- 156 (461)
. -..|.+.|++++|+ .|+..+++++.|..+.+||+.+.+...+... +.
T Consensus 180 ~~~tcl~~~~~H~S~vtsL~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 180 DKRTCLHTMILHKSAVTSLAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAG 257 (775)
T ss_pred cCchHHHHHHhhhhheeeeeec--cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEec
Confidence 0 01344889999999 5677899999999999999864322111100 00
Q ss_pred ---------CC--------Ccc----C-------------------------------------CCCCcccccccc---C
Q 012535 157 ---------HP--------EKA----A-------------------------------------GNGPIFGSHVSA---I 175 (461)
Q Consensus 157 ---------~~--------~~~----~-------------------------------------~~~~v~~~~~~~---~ 175 (461)
.. .+. . .+..|..+-+-. .
T Consensus 258 ~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~ 337 (775)
T KOG0319|consen 258 GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEES 337 (775)
T ss_pred CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccc
Confidence 00 000 0 000000000000 0
Q ss_pred cceeecCCCcccc------------------ccc--CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccc
Q 012535 176 PKSYMANGGCGER------------------NFG--CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH 235 (461)
Q Consensus 176 ~~~~~~~g~~~~~------------------~~~--~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (461)
-++...+...+.+ +.. ..+.+.+++|+.|.++++|. +... .....+.... .+|...
T Consensus 338 ~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr-~~~~--~~~~~~~a~~-~gH~~s 413 (775)
T KOG0319|consen 338 HLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR-LNNN--CSKSLCVAQA-NGHTNS 413 (775)
T ss_pred eEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEE-ecCC--cchhhhhhhh-cccccc
Confidence 0111111111110 011 13346899999999999998 4111 1122222222 799999
Q ss_pred eeeEEeCCCC-CEEEEe-CCCeEEEEEccCCCCceeeeccCC-CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC
Q 012535 236 INSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 236 v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 312 (461)
|.+++++..+ .+|+++ .|+++++|++...+.....+.+.. .....|...|++++++|+. +++|+|+.|.+.+||++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDL 492 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecc
Confidence 9999997764 567777 799999999986332211111111 2345699999999999998 99999999999999999
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccc
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (461)
..... ..++.+| ...|.++.|+|..+.|++++ |++|+||.+.+ ..++++|.||...+
T Consensus 493 e~~~l----~~vLsGH------------~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~aV----- 550 (775)
T KOG0319|consen 493 EQLRL----LGVLSGH------------TRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSAV----- 550 (775)
T ss_pred cCceE----EEEeeCC------------ccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecCcccee-----
Confidence 96654 4555555 48999999999999999976 79999999996 99999999999886
Q ss_pred cccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCccc
Q 012535 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLF 447 (461)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 447 (461)
+.++|-.+|+.|++++.||.|++|++++++++ .++.+|++.+-..
T Consensus 551 ----------lra~F~~~~~qliS~~adGliKlWnikt~eC~-~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 551 ----------LRASFIRNGKQLISAGADGLIKLWNIKTNECE-MTLDAHNDRVWAL 595 (775)
T ss_pred ----------EeeeeeeCCcEEEeccCCCcEEEEeccchhhh-hhhhhccceeEEE
Confidence 58999999999999999999999999999888 7999998876543
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.6e-34 Score=236.19 Aligned_cols=292 Identities=18% Similarity=0.229 Sum_probs=231.5
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
....|++.|.+++.+|+.+++|||+.|..-.||+..++. ...++.+|+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------------------~~~eltgHK--------- 106 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------------------FAGELTGHK--------- 106 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------------------ceeEecCCC---------
Confidence 355799999999999999999999999999999999886 456889999
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+.|+++.|+ .+|.+|++|..+|.|+||+..++.....+..... .+. -+.|+|.+..+
T Consensus 107 ---DSVt~~~Fs--hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~--------die-------Wl~WHp~a~il--- 163 (399)
T KOG0296|consen 107 ---DSVTCCSFS--HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE--------DIE-------WLKWHPRAHIL--- 163 (399)
T ss_pred ---CceEEEEEc--cCceEEEecCCCccEEEEEcccCceEEEeecccC--------ceE-------EEEecccccEE---
Confidence 889999999 7899999999999999999999887766542211 122 46889988885
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+.|+.||.+.+|. +... ...+. ..+|..++++=.|.|+|+.++++ .||+|++|++.+..+..
T Consensus 164 ---------lAG~~DGsvWmw~-ip~~------~~~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 164 ---------LAGSTDGSVWMWQ-IPSQ------ALCKV-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred ---------EeecCCCcEEEEE-CCCc------ceeeE-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 9999999999999 4221 22333 38999999999999999999999 89999999999875544
Q ss_pred eeec-----cC--------------------------------------CCCCCCCCcceEEEEEeC---CCCCeEEEEe
Q 012535 269 NIVD-----VK--------------------------------------PANMEDLTEVITSAEFHP---THCNMLAYSS 302 (461)
Q Consensus 269 ~~~~-----~~--------------------------------------~~~~~~~~~~v~~v~~~p---~~~~~l~~~~ 302 (461)
.+-. .. |.....+...+.++.+.| .- .+.|+|+
T Consensus 227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~ 305 (399)
T KOG0296|consen 227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGS 305 (399)
T ss_pred EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhccc
Confidence 4320 00 000112223333444433 33 5789999
Q ss_pred cCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEee
Q 012535 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV 381 (461)
Q Consensus 303 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 381 (461)
.||+|.|||+....+ +..-.|. .+|..+.|-+ ..+|+++ .+|.|+.||.++ ++++.++.+
T Consensus 306 vdG~i~iyD~a~~~~-----R~~c~he------------~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~G 366 (399)
T KOG0296|consen 306 VDGTIAIYDLAASTL-----RHICEHE------------DGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTG 366 (399)
T ss_pred ccceEEEEecccchh-----heeccCC------------CceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEec
Confidence 999999999988764 3333333 6799999998 5666665 589999999997 999999999
Q ss_pred ccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
|...+ ++++.+|+.++++++|.|+..+||++.
T Consensus 367 H~~~I---------------l~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGI---------------LDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred Cchhe---------------eEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99876 599999999999999999999999875
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-35 Score=244.25 Aligned_cols=290 Identities=16% Similarity=0.242 Sum_probs=231.3
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|++.|+-+.||++|+|||+++.|.+..||++.... .+++..++.+|.
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~----------- 269 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS----------- 269 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc-----------
Confidence 3699999999999999999999999999999987654 245677889998
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
.+|..+.|| ||.+++++++.|..+++||+.+|.......... .+.+.+.+|.|||..+
T Consensus 270 -~~V~yi~wS--PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~--------------~~S~~sc~W~pDg~~~----- 327 (519)
T KOG0293|consen 270 -QPVSYIMWS--PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL--------------GFSVSSCAWCPDGFRF----- 327 (519)
T ss_pred -CceEEEEEC--CCCCeEEecCchHheeeccCCcchhhhhcccCc--------------CCCcceeEEccCCcee-----
Confidence 889999999 567899999999999999999998665444320 1222377999999985
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
++|+.|+.+..|| + +........ ......|.+++..+||+++++. .|..|++++.++....
T Consensus 328 -------V~Gs~dr~i~~wd-l---Dgn~~~~W~----gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr--- 389 (519)
T KOG0293|consen 328 -------VTGSPDRTIIMWD-L---DGNILGNWE----GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR--- 389 (519)
T ss_pred -------EecCCCCcEEEec-C---Ccchhhccc----ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh---
Confidence 9999999999999 3 322221111 1122568999999999999887 8999999998754322
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.+.....+|+++..+.++ +++++.-.+..|++||+..... ++.+.+|... ..+-.-+|.
T Consensus 390 ------~lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~l----v~kY~Ghkq~----------~fiIrSCFg 448 (519)
T KOG0293|consen 390 ------GLISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKL----VRKYFGHKQG----------HFIIRSCFG 448 (519)
T ss_pred ------ccccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhH----HHHhhccccc----------ceEEEeccC
Confidence 122346789999999999 9999999999999999997665 5666666522 335555666
Q ss_pred c-CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC-CEEEEecCCCeEEEEec
Q 012535 351 R-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGC 427 (461)
Q Consensus 351 ~-~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~ 427 (461)
- +..++++|+ |+.|+||+..+ ++++..+.||...++ +++|+|.. ..+|++|+||+|+||.+
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vN---------------cVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVN---------------CVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCCcceEEecCCCceEEEEEccC-CceeEeecCCcceee---------------EEecCCCCHHHhhccCCCCeEEEecC
Confidence 4 558899998 59999999997 999999999998875 99999965 57899999999999987
Q ss_pred CC
Q 012535 428 SE 429 (461)
Q Consensus 428 ~~ 429 (461)
..
T Consensus 513 ~~ 514 (519)
T KOG0293|consen 513 SD 514 (519)
T ss_pred Cc
Confidence 64
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=221.65 Aligned_cols=265 Identities=17% Similarity=0.281 Sum_probs=210.9
Q ss_pred ccc-ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 32 VQE-VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 32 ~~h-~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
++| ...|+.+.+.||+++||+|+.. .||+||+.++... .+.+|.+|.
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~---------------------Pv~t~e~h~---------- 83 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN---------------------PVATFEGHT---------- 83 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---------------------ceeEEeccC----------
Confidence 344 4579999999999999999866 7999999987643 677899998
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|+++.|. .+|+.+++|++||+++|||++...+.+..... ++|. ++..+|+...+
T Consensus 84 --kNVtaVgF~--~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---------spVn-------~vvlhpnQteL---- 139 (311)
T KOG0315|consen 84 --KNVTAVGFQ--CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---------SPVN-------TVVLHPNQTEL---- 139 (311)
T ss_pred --CceEEEEEe--ecCeEEEecCCCceEEEEeccCcccchhccCC---------CCcc-------eEEecCCcceE----
Confidence 669999998 78999999999999999999986655554442 2233 67778877664
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++|..+|.|++|| +... .+...........|.++...|+|.+++.+ ..|...+|++-+......
T Consensus 140 --------is~dqsg~irvWD-l~~~------~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 140 --------ISGDQSGNIRVWD-LGEN------SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred --------EeecCCCcEEEEE-ccCC------ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence 9999999999999 5332 12222234445789999999999999999 899999999986443333
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+..+ ..++.|...+..+.+||++ ++||+++.|.+++||+...--.. ... +.+|...+..++|
T Consensus 205 l~P~--~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kl---e~~------------l~gh~rWvWdc~F 266 (311)
T KOG0315|consen 205 LEPV--HKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKL---ELV------------LTGHQRWVWDCAF 266 (311)
T ss_pred ceEh--hheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCceee---EEE------------eecCCceEEeeee
Confidence 2222 3578899999999999999 99999999999999998775110 123 3445589999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCcc
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~ 386 (461)
|.||+||++|+ |+.+++||+.. ++.+..+.+|....
T Consensus 267 S~dg~YlvTassd~~~rlW~~~~-~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 267 SADGEYLVTASSDHTARLWDLSA-GKEVRQYQGHHKAA 303 (311)
T ss_pred ccCccEEEecCCCCceeeccccc-CceeeecCCccccc
Confidence 99999999976 79999999996 88899999887653
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.5e-33 Score=246.77 Aligned_cols=282 Identities=21% Similarity=0.353 Sum_probs=225.6
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|.++|++++|+|++++|++++.||.|++|++.+++ ....+..|.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------------------~~~~~~~~~----------- 51 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------------------LLRTLKGHT----------- 51 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------------------cEEEEecCC-----------
Confidence 3689999999999999999999999999999998654 234556676
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..+..+.|+| ++.++++++.||.|++|++.+++.......+ ...+. ++.|++++..+
T Consensus 52 -~~i~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~--------~~~i~-------~~~~~~~~~~~----- 108 (289)
T cd00200 52 -GPVRDVAASA--DGTYLASGSSDKTIRLWDLETGECVRTLTGH--------TSYVS-------SVAFSPDGRIL----- 108 (289)
T ss_pred -cceeEEEECC--CCCEEEEEcCCCeEEEEEcCcccceEEEecc--------CCcEE-------EEEEcCCCCEE-----
Confidence 6688999994 5679999999999999999986544444322 11233 67888887663
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
++++.++.+.+|+ +.. ......+ ..|...+.+++|+|++.+++++ .++.|++||++..+...
T Consensus 109 -------~~~~~~~~i~~~~-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-- 171 (289)
T cd00200 109 -------SSSSRDKTIKVWD-VET------GKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA-- 171 (289)
T ss_pred -------EEecCCCeEEEEE-CCC------cEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce--
Confidence 7777799999999 431 2223333 5788899999999999999988 59999999998554432
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.+..|...+.++.|+|++ +.+++++.|+.|++||++.++. +..+..+. ..+.++.|+
T Consensus 172 ------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~------------~~i~~~~~~ 228 (289)
T cd00200 172 ------TLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKC----LGTLRGHE------------NGVNSVAFS 228 (289)
T ss_pred ------eEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCce----ecchhhcC------------CceEEEEEc
Confidence 244677889999999998 8899999999999999987654 34443333 689999999
Q ss_pred cCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 351 ~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
|++.++++++ ++.|++||+.. ++....+..|...+ .+++|++++++|++++.||.|++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRT-GECVQTLSGHTNSV---------------TSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCC-ceeEEEccccCCcE---------------EEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999988 79999999986 77778887776554 4999999999999999999999996
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=252.29 Aligned_cols=301 Identities=18% Similarity=0.293 Sum_probs=236.4
Q ss_pred cceEEEEEcCCCCEEEEeecC-CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 36 DIISAIEFDKSGDHLATGDRG-GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
.+|..++|+..|++||.|+.. |.+.||+++... ++...++|. ..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----------------------YVlKQQgH~------------~~ 352 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----------------------YVLKQQGHS------------DR 352 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----------------------eeeeccccc------------cc
Confidence 568899999999999999855 899999998765 566778998 77
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
+++++++ +||+++++|+.||.|+|||...+-+..++..|. +.+. .+.|+..|+.+
T Consensus 353 i~~l~YS--pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt--------s~Vt-------~v~f~~~g~~l-------- 407 (893)
T KOG0291|consen 353 ITSLAYS--PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT--------SGVT-------AVQFTARGNVL-------- 407 (893)
T ss_pred eeeEEEC--CCCcEEEeccCCCcEEEEeccCceEEEEeccCC--------CceE-------EEEEEecCCEE--------
Confidence 9999999 679999999999999999999998888777663 3455 78999999986
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeec
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~ 272 (461)
++.+-||+|+.|| +.. ..+.+++.........|++..|.|.++++| +.-.|.+|++.+++..-
T Consensus 408 ----lssSLDGtVRAwD-lkR------YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---- 472 (893)
T KOG0291|consen 408 ----LSSSLDGTVRAWD-LKR------YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---- 472 (893)
T ss_pred ----EEeecCCeEEeee-ecc------cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee----
Confidence 9999999999999 433 344455544455567899999999999988 56789999999776442
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
.+.||.++|.+++|+|.+ ..|++++.|.+||+||+-..... +.+++.. ..+..++|+|+
T Consensus 473 ----iLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---vEtl~i~-------------sdvl~vsfrPd 531 (893)
T KOG0291|consen 473 ----ILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---VETLEIR-------------SDVLAVSFRPD 531 (893)
T ss_pred ----hhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCce---eeeEeec-------------cceeEEEEcCC
Confidence 488999999999999999 89999999999999998665211 3444433 56999999999
Q ss_pred CCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccc--cccccc---cCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP--KLCDLY---ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 353 g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
|+.|+++. ||.|.+||... ...+..+.+-..... ...+.. .+..-...+.+++++||.++++||..+.|.+|+
T Consensus 532 G~elaVaTldgqItf~d~~~-~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKE-AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCeEEEEEecceEEEEEhhh-ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 99999976 79999999985 555555544322111 000000 000011235899999999999999999999999
Q ss_pred cCCCCcc
Q 012535 427 CSEGSAE 433 (461)
Q Consensus 427 ~~~~~~~ 433 (461)
+.++-..
T Consensus 611 v~~~vll 617 (893)
T KOG0291|consen 611 VPEGVLL 617 (893)
T ss_pred Cchhhee
Confidence 9987544
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-33 Score=224.83 Aligned_cols=269 Identities=14% Similarity=0.242 Sum_probs=200.7
Q ss_pred Cceeeeccc---cccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccc
Q 012535 14 PLEWKFSQV---FGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (461)
Q Consensus 14 ~~~w~~~~~---~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
...|++..- |+... ....+|+..|..+..++||++.++++.|+++++||+.+++
T Consensus 40 ii~W~L~~dd~~~G~~~-r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~---------------------- 96 (315)
T KOG0279|consen 40 IIVWKLTSDDIKYGVPV-RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE---------------------- 96 (315)
T ss_pred EEEEEeccCccccCcee-eeeeccceEecceEEccCCceEEeccccceEEEEEecCCc----------------------
Confidence 355777542 22111 1244699999999999999999999999999999999875
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
....|.+|. ..|.+++|+ +|++.+++|+.|++|++|++..+........ .+ ...|.
T Consensus 97 -~t~~f~GH~------------~dVlsva~s--~dn~qivSGSrDkTiklwnt~g~ck~t~~~~-~~------~~WVs-- 152 (315)
T KOG0279|consen 97 -STRRFVGHT------------KDVLSVAFS--TDNRQIVSGSRDKTIKLWNTLGVCKYTIHED-SH------REWVS-- 152 (315)
T ss_pred -EEEEEEecC------------CceEEEEec--CCCceeecCCCcceeeeeeecccEEEEEecC-CC------cCcEE--
Confidence 346789999 679999999 6788999999999999999876543332222 10 23344
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
++.|+|+.... ++++++.|+.|++|| +.+.+. ... ..+|++.++.++++|||.+.++
T Consensus 153 -----cvrfsP~~~~p----------~Ivs~s~DktvKvWn-l~~~~l------~~~-~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 153 -----CVRFSPNESNP----------IIVSASWDKTVKVWN-LRNCQL------RTT-FIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred -----EEEEcCCCCCc----------EEEEccCCceEEEEc-cCCcch------hhc-cccccccEEEEEECCCCCEEec
Confidence 88999985211 259999999999999 544333 222 3789999999999999999999
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
| .||.+.+||++.++.++. .++...|.+++|+|+. ..|+ +..+..|+|||+.++..+......+.+.
T Consensus 210 Ggkdg~~~LwdL~~~k~lys---------l~a~~~v~sl~fspnr-ywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~- 277 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYS---------LEAFDIVNSLCFSPNR-YWLC-AATATSIKIWDLESKAVVEELKLDGIGP- 277 (315)
T ss_pred CCCCceEEEEEccCCceeEe---------ccCCCeEeeEEecCCc-eeEe-eccCCceEEEeccchhhhhhcccccccc-
Confidence 9 899999999997776542 3478899999999986 4444 4556669999999987643221111111
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEcc
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~ 370 (461)
....-.....+++|++||+.|++|- |+.|++|.+.
T Consensus 278 ------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 ------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 0111113467899999999999985 7999999875
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=248.11 Aligned_cols=324 Identities=17% Similarity=0.238 Sum_probs=235.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|-+.|+++.|+.|.++|++|+.|-+++||.++..+.. ....+.+|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------------~~~~l~gHk---------- 189 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------------FTYALNGHK---------- 189 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------------ceEeccCCC----------
Confidence 5679999999999999999999999999999999876532 445688998
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC-----------------------ce-----e--EEeeeecCCCc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-----------------------KV-----K--KVFDWNVHPEK 160 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~-----------------------~~-----~--~~~~~~~~~~~ 160 (461)
+.|.+.-|. .|...+++.+.||.+.+|..... +. . .....-....
T Consensus 190 --d~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~- 264 (893)
T KOG0291|consen 190 --DYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN- 264 (893)
T ss_pred --cceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc-
Confidence 889998888 56778999999999999987611 00 0 0000000000
Q ss_pred cCCCCCccccccccC-------------cceeecCCCcccccc----------cCCCCCccccccC-CCcEEeeeeeccc
Q 012535 161 AAGNGPIFGSHVSAI-------------PKSYMANGGCGERNF----------GCASNDSSFPPGG-VSSLRLPVVVTSQ 216 (461)
Q Consensus 161 ~~~~~~v~~~~~~~~-------------~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~-~~~i~i~~~~~~~ 216 (461)
...+....+++. .+--.|+-..+..+. .+...|-++.|+. -|.+.+|+ |..
T Consensus 265 ---~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe--Wqs 339 (893)
T KOG0291|consen 265 ---SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE--WQS 339 (893)
T ss_pred ---ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE--eec
Confidence 011221111110 000011111111111 1122354555444 48889998 222
Q ss_pred CccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCC
Q 012535 217 ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 295 (461)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 295 (461)
+..... .++|...+.+++++|||+++++| +||.|++||...+ -++. ++..|...|+.+.|+..+
T Consensus 340 EsYVlK------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~v-------TFteHts~Vt~v~f~~~g- 404 (893)
T KOG0291|consen 340 ESYVLK------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFV-------TFTEHTSGVTAVQFTARG- 404 (893)
T ss_pred cceeee------ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEE-------EeccCCCceEEEEEEecC-
Confidence 221111 27899999999999999999999 8999999998844 3443 578899999999999999
Q ss_pred CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C-CeEEEEEccCCC
Q 012535 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDS 373 (461)
Q Consensus 296 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-~~i~vwd~~~~~ 373 (461)
+.+++++.||+|+.||+...+. .++|..+.. ....+++..|.|..+.+|+ | -.|.+|++++ +
T Consensus 405 ~~llssSLDGtVRAwDlkRYrN----fRTft~P~p-----------~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-G 468 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRN----FRTFTSPEP-----------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-G 468 (893)
T ss_pred CEEEEeecCCeEEeeeecccce----eeeecCCCc-----------eeeeEEEEcCCCCEEEeeccceEEEEEEEeec-C
Confidence 9999999999999999988765 567766542 4578899999999999987 5 7899999997 9
Q ss_pred CCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCC
Q 012535 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (461)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 441 (461)
+.+..+.+|++++. +++|+|++..|++||.|.+|++||+-.......+++...
T Consensus 469 qllDiLsGHEgPVs---------------~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s 521 (893)
T KOG0291|consen 469 QLLDILSGHEGPVS---------------GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS 521 (893)
T ss_pred eeeehhcCCCCcce---------------eeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc
Confidence 99999999999974 899999999999999999999999987643334444433
No 29
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.6e-33 Score=232.93 Aligned_cols=306 Identities=18% Similarity=0.241 Sum_probs=230.8
Q ss_pred ccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCC
Q 012535 20 SQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (461)
Q Consensus 20 ~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 99 (461)
-+-+..+.+...+.|.+.|.++... ++++++|+.||.++|||..+. ....+.||
T Consensus 90 v~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk------------------------~~~~~~Gh 143 (423)
T KOG0313|consen 90 VEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK------------------------SIKTIVGH 143 (423)
T ss_pred EEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc------------------------eEEEEecC
Confidence 3444555666778899999999988 779999999999999998765 34578899
Q ss_pred CcchhhccccccccceEEEEEeecC-CCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcce
Q 012535 100 EPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (461)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~v~~~p~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (461)
. ++|.+++|.... ....|++++.|.++++|.++.++.+........ -+...|. +++
T Consensus 144 t------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~----GHk~~V~-------sVs 200 (423)
T KOG0313|consen 144 T------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR----GHKRSVD-------SVS 200 (423)
T ss_pred C------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc----cccccee-------EEE
Confidence 9 889988887422 223699999999999999987653322111100 0123344 667
Q ss_pred eecCCCcccccccCCCCCccccccCCCcEEeeeeecccCcc-------------------ccceeeEeeecccccceeeE
Q 012535 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-------------------LVAGCRRIYAHAHDYHINSI 239 (461)
Q Consensus 179 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~v~~i 239 (461)
..++|... ++|+.|..|++|+ ....... ....+. ..+.+|...|.++
T Consensus 201 v~~sgtr~------------~SgS~D~~lkiWs-~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~-vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 201 VDSSGTRF------------CSGSWDTMLKIWS-VETDEEDELESSSNRRRKKQKREKEGGTRTPL-VTLEGHTEPVSSV 266 (423)
T ss_pred ecCCCCeE------------Eeecccceeeecc-cCCCccccccccchhhhhhhhhhhcccccCce-EEecccccceeeE
Confidence 77777764 9999999999998 3221110 011122 3348999999999
Q ss_pred EeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccc
Q 012535 240 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (461)
Q Consensus 240 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 318 (461)
.|++ ...+.++ .|.+|+.||+.+++..-.+. -+..++++.++|.. ++|++|+.|..|++||.+++.-.
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~---------~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT---------TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeee---------cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCCc
Confidence 9998 4456666 79999999999877664332 35678999999987 99999999999999999987421
Q ss_pred cccccccccccCCCccccccccccceeEEEEccCCCEE-EEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCC
Q 012535 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI-LSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (461)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l-~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (461)
.....|.+|.+.|.++.|+|...++ ++|+ |+++++||+++...++..+.+|...+
T Consensus 336 -------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv---------- 392 (423)
T KOG0313|consen 336 -------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV---------- 392 (423)
T ss_pred -------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE----------
Confidence 1123456677999999999976654 4566 69999999998666999999997665
Q ss_pred CccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+++.|+ ++.++++||.|+.|+|+.-.
T Consensus 393 -----l~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 393 -----LSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -----EEEecc-CCceEEeccCcceEEEeccc
Confidence 589998 67799999999999998654
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-34 Score=236.97 Aligned_cols=275 Identities=16% Similarity=0.290 Sum_probs=215.1
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
..+.|+|+.+. ...+++|..|++|+|||..+.. +...+.||+ +
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------G 238 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------G 238 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------C
Confidence 56789999987 4479999999999999987654 667899999 8
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.|.|+.|. .+.+++|+.|.+|++||++++++..+.-.|... |. .+.|
T Consensus 239 SVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHcea--------VL-------hlrf-------------- 285 (499)
T KOG0281|consen 239 SVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--------VL-------HLRF-------------- 285 (499)
T ss_pred cEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhcce--------eE-------EEEE--------------
Confidence 89999996 569999999999999999999887765554321 11 1122
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+..++++++.|..+.+|| +.. .....+++.+ .||...|+.+.|+. ++++++ .|.+|++|+..+.+...
T Consensus 286 ~ng~mvtcSkDrsiaVWd-m~s---ps~it~rrVL-vGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvR---- 354 (499)
T KOG0281|consen 286 SNGYMVTCSKDRSIAVWD-MAS---PTDITLRRVL-VGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVR---- 354 (499)
T ss_pred eCCEEEEecCCceeEEEe-ccC---chHHHHHHHH-hhhhhheeeecccc--ceEEEecCCceEEEEeccceeeeh----
Confidence 223459999999999999 322 2233344443 89999999999864 489998 89999999998665442
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
++.+|...|-|+++. + +++++|+.|.+|++||+..|.. ++.+++|+ .-|.++.|.
T Consensus 355 ----tl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvLeGHE------------eLvRciRFd-- 409 (499)
T KOG0281|consen 355 ----TLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGHE------------ELVRCIRFD-- 409 (499)
T ss_pred ----hhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHHhchH------------Hhhhheeec--
Confidence 688899999999886 4 8999999999999999999987 67778776 679999995
Q ss_pred CCEEEEec-CCeEEEEEccCCCC--------CeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEE
Q 012535 353 GRHILSRD-YMTLKLWDINMDSG--------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (461)
Q Consensus 353 g~~l~s~~-d~~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (461)
.+.+++|. ||+|++||+...-. ++..+..|.+- |+.+.| |...+++++.|.+|.
T Consensus 410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR---------------VFrLQF--D~fqIvsssHddtIL 472 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR---------------VFRLQF--DEFQIISSSHDDTIL 472 (499)
T ss_pred CceeeeccccceEEEEecccccCCcccccchHHHhhhhccce---------------eEEEee--cceEEEeccCCCeEE
Confidence 67899987 69999999985222 12233334333 357777 567899999999999
Q ss_pred EEecCCCC
Q 012535 424 VFGCSEGS 431 (461)
Q Consensus 424 iw~~~~~~ 431 (461)
|||+.++-
T Consensus 473 iWdFl~~~ 480 (499)
T KOG0281|consen 473 IWDFLNGP 480 (499)
T ss_pred EEEcCCCC
Confidence 99999873
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=256.23 Aligned_cols=288 Identities=18% Similarity=0.339 Sum_probs=233.1
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
|...|.|+.|+++|++|++++.|+.+++|+....+. +....+.+|. .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------~ 204 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------R 204 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------c
Confidence 478899999999999999999999999999865431 2445567888 7
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEc-cCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.|+.++|+ +++.++++++.|++|++||+ ..+...+++..|. ..+. +++|+|+|+.+
T Consensus 205 ~v~~~~fs--~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~--------~~v~-------~~~f~p~g~~i------ 261 (456)
T KOG0266|consen 205 GVSDVAFS--PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS--------TYVT-------SVAFSPDGNLL------ 261 (456)
T ss_pred ceeeeEEC--CCCcEEEEecCCceEEEeeccCCCeEEEEecCCC--------CceE-------EEEecCCCCEE------
Confidence 79999999 56779999999999999999 4556777766653 3344 88999999775
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc-eee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNI 270 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~~ 270 (461)
++|+.|+.|++|| +.. .++.+.+ .+|...|.+++|+++++.|+++ .|+.|++||+.++... ..
T Consensus 262 ------~Sgs~D~tvriWd-~~~------~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~- 326 (456)
T KOG0266|consen 262 ------VSGSDDGTVRIWD-VRT------GECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLK- 326 (456)
T ss_pred ------EEecCCCcEEEEe-ccC------CeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeee-
Confidence 9999999999999 433 5566665 8999999999999999999999 7999999999976632 11
Q ss_pred eccCCCCCCCCCc--ceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 271 VDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 271 ~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
.+.++.. .++++.|+|++ .++++++.|+.+++||++.+.. ...+..+... ...+.+..
T Consensus 327 ------~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~---------~~~~~~~~ 386 (456)
T KOG0266|consen 327 ------LLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNL---------VRCIFSPT 386 (456)
T ss_pred ------cccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcc----eeeecccCCc---------ceeEeccc
Confidence 2333333 59999999999 9999999999999999998865 4555555421 01344555
Q ss_pred EccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec-cCccccccccccCCCccceeeEEEecCCCEEEEec--CCCeEEE
Q 012535 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRV 424 (461)
Q Consensus 349 ~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~i 424 (461)
.++.++++++|+ |+.|++||+.+ +..+..+.+| ...+ ..+++++...++++++ .|+.+++
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~---------------~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSS-GGILQRLEGHSKAAV---------------SDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCc-cchhhhhcCCCCCce---------------eccccCCCcCeeeecCcCCCceEEE
Confidence 578999999987 69999999996 8889999999 4443 4899999999999998 7999999
Q ss_pred EecC
Q 012535 425 FGCS 428 (461)
Q Consensus 425 w~~~ 428 (461)
|...
T Consensus 451 w~~~ 454 (456)
T KOG0266|consen 451 WKYD 454 (456)
T ss_pred ecCC
Confidence 9764
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-33 Score=216.68 Aligned_cols=255 Identities=18% Similarity=0.332 Sum_probs=213.0
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
-.|+++|.++.|+-||+|.++++.|.+|++|+...+. +++++.+|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG----------- 59 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG----------- 59 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC-----------
Confidence 3588999999999999999999999999999987665 668899998
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|..++.+ .|+..|++++.|+.+.+||+.+|+..+.
T Consensus 60 -~EVlD~~~s--~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---------------------------------------- 96 (307)
T KOG0316|consen 60 -HEVLDAALS--SDNSKFASCGGDKAVQVWDVNTGKVDRR---------------------------------------- 96 (307)
T ss_pred -ceeeecccc--ccccccccCCCCceEEEEEcccCeeeee----------------------------------------
Confidence 449999988 7788999999999999999999875331
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCC-cee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~ 269 (461)
+.+|.+.|+.++|+.+...+++| -|.++++||.+.... +++
T Consensus 97 -------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 97 -------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred -------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 27888999999999999999999 699999999986442 232
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+....+.|.++.... ..+++|+.||++|.||++.+.+ ...+-+ .+|++++|
T Consensus 140 -------ildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l----~sDy~g--------------~pit~vs~ 191 (307)
T KOG0316|consen 140 -------ILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTL----SSDYFG--------------HPITSVSF 191 (307)
T ss_pred -------hhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeeccee----ehhhcC--------------CcceeEEe
Confidence 3555678899998884 5799999999999999999986 233333 46999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
++||+.+++++ ++++++.|-.+ +++++.+++|.+...++ +++++.....+++|++||.|++||+.
T Consensus 192 s~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykl-------------dc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKL-------------DCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred cCCCCEEEEeeccceeeecccch-hHHHHHhcccccceeee-------------eeeecccceeEEeccCCceEEEEEec
Confidence 99999988877 79999999997 99999999998765432 68888888899999999999999999
Q ss_pred CCCccceeeccCCCC
Q 012535 429 EGSAESTTLEASKNP 443 (461)
Q Consensus 429 ~~~~~~~~~~~~~~~ 443 (461)
.+... ..++.+..+
T Consensus 258 d~~~~-sk~~~~~~v 271 (307)
T KOG0316|consen 258 DETQI-SKLSVVSTV 271 (307)
T ss_pred cceee-eeeccCCce
Confidence 87654 344444443
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-31 Score=268.82 Aligned_cols=307 Identities=14% Similarity=0.206 Sum_probs=218.4
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|++++|+|+|++||+|+.|+.|+||+.......+.. .......+.++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~---------------~~~~~~~~~~~----------- 532 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD---------------IHYPVVELASR----------- 532 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc---------------cccceEEeccc-----------
Confidence 4558999999999999999999999999999997642110000 00011112222
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeec-CCCccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERN 189 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~g~~~~~~ 189 (461)
..|.+++|+| .++.+|++++.||+|++||+.+++.......+ .+.|. +++|+| ++..+
T Consensus 533 --~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H--------~~~V~-------~l~~~p~~~~~L--- 591 (793)
T PLN00181 533 --SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTEMKEH--------EKRVW-------SIDYSSADPTLL--- 591 (793)
T ss_pred --CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEEecCC--------CCCEE-------EEEEcCCCCCEE---
Confidence 5589999986 34678999999999999999988766555443 33455 788986 56664
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeC-CCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
++|+.|+.|++|| +... .+...+ .. ...+.++.|+ +++..|++| .|+.|++||++.....
T Consensus 592 ---------~Sgs~Dg~v~iWd-~~~~------~~~~~~-~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~ 653 (793)
T PLN00181 592 ---------ASGSDDGSVKLWS-INQG------VSIGTI-KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP 653 (793)
T ss_pred ---------EEEcCCCEEEEEE-CCCC------cEEEEE-ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 9999999999999 4322 222222 22 3578899995 568999999 8999999999865433
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc--ccccccccccccCCCcccccccccccee
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
.. .+.+|...|.++.|. ++ ..|++++.|++|++||++.... ....+.. +.+|...+.
T Consensus 654 ~~-------~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~------------~~gh~~~i~ 712 (793)
T PLN00181 654 LC-------TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHS------------FMGHTNVKN 712 (793)
T ss_pred ce-------EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEE------------EcCCCCCee
Confidence 22 356799999999997 45 7899999999999999975421 0011223 445558899
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeecc-CccccccccccCCCccceeeEEEecCCCEEEEecCCCeEE
Q 012535 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (461)
.++|+|++.+|++|+ |+.|++|+... ..++..+.... .....+. ....-..|.+++|+|++..|++|+.||.|+
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~---~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE---VDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCC-CCceEEEecccCCcccccc---cCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 999999999999987 69999999875 44443332111 1111000 011112356999999999999999999999
Q ss_pred EEec
Q 012535 424 VFGC 427 (461)
Q Consensus 424 iw~~ 427 (461)
||++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9986
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=250.51 Aligned_cols=297 Identities=18% Similarity=0.249 Sum_probs=234.4
Q ss_pred ccccccceEEEEE-cCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEF-DKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~-s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+..+.|..|+| .|+.++||+++..+.+|+|++.+... ..+.||+
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c------------------------~ii~GH~--------- 365 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC------------------------QIIPGHT--------- 365 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce------------------------EEEeCch---------
Confidence 4467788999997 56778999999999999998876542 2688999
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+.|.++... ..|.+|++|+.|+++++|.++++..+......... +.+.+. +++++..+.
T Consensus 366 ---e~vlSL~~~--~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g----H~~svg-------ava~~~~~a----- 424 (775)
T KOG0319|consen 366 ---EAVLSLDVW--SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG----HTNSVG-------AVAGSKLGA----- 424 (775)
T ss_pred ---hheeeeeec--ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc----cccccc-------eeeecccCc-----
Confidence 889999833 34679999999999999999554332222111100 122233 455544443
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCcc-c--cceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETN-L--VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
.++++++.|.++++|+ +...+.. . ...++.. ...|...|++++.+|+..++++| .|.+.++|++++..
T Consensus 425 ------sffvsvS~D~tlK~W~-l~~s~~~~~~~~~~~~~t-~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~ 496 (775)
T KOG0319|consen 425 ------SFFVSVSQDCTLKLWD-LPKSKETAFPIVLTCRYT-ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR 496 (775)
T ss_pred ------cEEEEecCCceEEEec-CCCcccccccceehhhHH-HHhhcccccceEecCCCceEEecccccceeeecccCce
Confidence 3479999999999999 5441111 1 1111111 26899999999999999999999 79999999998333
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
.. ..+.+|...|+++.|+|.. +++++++.|++|+||.+.+... +.+|++|. ..|.
T Consensus 497 -l~-------~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSC----lkT~eGH~------------~aVl 551 (775)
T KOG0319|consen 497 -LL-------GVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSC----LKTFEGHT------------SAVL 551 (775)
T ss_pred -EE-------EEeeCCccceEEEEecccc-ceeEeccCCceEEEEEecccee----eeeecCcc------------ceeE
Confidence 22 2588999999999999998 9999999999999999999876 67777776 8999
Q ss_pred EEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 346 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 346 ~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
.+.|-.+|+.|+++ +||-+++|++++ ++++.++..|...+ |+++-++....+++|+.||.|.+
T Consensus 552 ra~F~~~~~qliS~~adGliKlWnikt-~eC~~tlD~H~Drv---------------WaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWNIKT-NECEMTLDAHNDRV---------------WALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEeccc-hhhhhhhhhcccee---------------EEEeecCccceeEecCCCeEEEE
Confidence 99999999999995 589999999997 99999999999865 79999999999999999999999
Q ss_pred EecCCC
Q 012535 425 FGCSEG 430 (461)
Q Consensus 425 w~~~~~ 430 (461)
|.=.+.
T Consensus 616 wkD~Te 621 (775)
T KOG0319|consen 616 WKDVTE 621 (775)
T ss_pred eecCcH
Confidence 976654
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-32 Score=233.47 Aligned_cols=314 Identities=13% Similarity=0.189 Sum_probs=237.3
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|...++-..|||.|.|+|+|...|+|||||....+.+ +..+++.-.
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi---------------------LKnef~v~a---------- 103 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI---------------------LKNEFQVLA---------- 103 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCccee---------------------eeeeeeecc----------
Confidence 4579999999999999999999999999999998764432 455566555
Q ss_pred cccceEEEEEeecCCCcEEEEEe--CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 111 IEEKINKIRWCQSANSALYLLST--NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
++|..|+|+ .++.+|++.+ .++..+++-.+++.-.-.+..|. ..+. ++.|-|...+-
T Consensus 104 --G~I~Di~Wd--~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhS--------r~in-------s~~~KpsRPfR-- 162 (603)
T KOG0318|consen 104 --GPIKDISWD--FDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHS--------RRIN-------SVDFKPSRPFR-- 162 (603)
T ss_pred --cccccceeC--CCCcEEEEEecCccceeEEEEecCCCccceeeccc--------eeEe-------eeeccCCCceE--
Confidence 889999999 6677777764 44444444434443333333321 1222 45666655542
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
+++|++|+.|.+|+ .+..+....+ +.|...|+++.|+|||++|++. .||++.+||-.+++..
T Consensus 163 ---------i~T~sdDn~v~ffe-------GPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 163 ---------IATGSDDNTVAFFE-------GPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred ---------EEeccCCCeEEEee-------CCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence 59999999999998 4445555554 8899999999999999999998 8999999999988776
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
..+- .-.+|.+.|.+++|+||+ ..|++++.|.+++|||+.+.++ ++++..... ....-..+
T Consensus 226 g~l~-----~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~sl----v~t~~~~~~---------v~dqqvG~ 286 (603)
T KOG0318|consen 226 GELE-----DSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSL----VSTWPMGST---------VEDQQVGC 286 (603)
T ss_pred EEec-----CCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccce----EEEeecCCc---------hhceEEEE
Confidence 5442 245799999999999999 9999999999999999999876 444443221 00234455
Q ss_pred EEccCCCEEEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 348 KFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 348 ~~s~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
.|. ...|++ ..+|.|.+++... ..++..+.+|...+ ++++.++|+++|++|+.||.|.-|+
T Consensus 287 lWq--kd~lItVSl~G~in~ln~~d-~~~~~~i~GHnK~I---------------TaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 287 LWQ--KDHLITVSLSGTINYLNPSD-PSVLKVISGHNKSI---------------TALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEe--CCeEEEEEcCcEEEEecccC-CChhheecccccce---------------eEEEEcCCCCEEEeeccCceEEEEe
Confidence 665 345565 5579999999996 66999999999876 5999999999999999999999999
Q ss_pred cCCCCccceeeccCCCCCcccccc
Q 012535 427 CSEGSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
..++......-+.|...+..+...
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred cCCccccccccccccceEEEEeec
Confidence 999876655557777666655443
No 36
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-33 Score=252.68 Aligned_cols=272 Identities=18% Similarity=0.283 Sum_probs=202.4
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCc-----------------------c-------cccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQ-----------------------R-------RDLEMMDY 82 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~-----------------------~-------~~~~~~~~ 82 (461)
.|.+.|++|.||+||+|||+|+.||.|+||.+...+..... . ...+....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999999999999999999999999998761110000 0 00000000
Q ss_pred --c-----ccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeee
Q 012535 83 --S-----MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (461)
Q Consensus 83 --~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 155 (461)
. ..+.-.-+++.+|.||. +.|..|.|+. +.+|++++.|+|||||++...++..+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccccc---CCeeEeccccccEEeecCCCcceeeE----
Confidence 0 01111235566788998 6699999983 45999999999999999876654432
Q ss_pred cCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccc
Q 012535 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH 235 (461)
Q Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (461)
-.|...
T Consensus 406 --------------------------------------------------------------------------F~Hndf 411 (712)
T KOG0283|consen 406 --------------------------------------------------------------------------FSHNDF 411 (712)
T ss_pred --------------------------------------------------------------------------EecCCe
Confidence 357789
Q ss_pred eeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECC
Q 012535 236 INSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (461)
Q Consensus 236 v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (461)
|+|++|+|. .++|++| -|+.|+||++...+ .. .+.....-|++++|.|+| +..++|+.+|.+++|+..
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-Vv--------~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-VV--------DWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCe-eE--------eehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEcc
Confidence 999999995 7899999 69999999998433 22 234456889999999999 999999999999999998
Q ss_pred CcccccccccccccccCCCccccccccccceeEEEEccCC--CEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccc
Q 012535 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (461)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g--~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (461)
..++.. .+.-+.. ...-..|. .|+++.|.|.. +.|++..|..|||||.+. ..++..|+++......
T Consensus 482 ~lk~~~----~~~I~~~---~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ--- 549 (712)
T KOG0283|consen 482 GLKLVS----DFHIRLH---NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ--- 549 (712)
T ss_pred CCeEEE----eeeEeec---cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc---
Confidence 876521 1111100 00111222 79999999843 488888899999999984 8899999987765432
Q ss_pred cccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
....|+.||++|+++++|..|+||+...
T Consensus 550 ----------~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 550 ----------ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ----------eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 2788999999999999999999999854
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-33 Score=230.83 Aligned_cols=270 Identities=17% Similarity=0.242 Sum_probs=222.0
Q ss_pred CccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCC
Q 012535 87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (461)
Q Consensus 87 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (461)
-|...+...+.+|. .+|+.+-|+| +-...++++.|.+|++||..++++......+.. .
T Consensus 95 ipRp~l~~~l~g~r------------~~vt~v~~hp--~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~--------s 152 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHR------------SSVTRVIFHP--SEALVVSASEDATIKVFDTETGELERSLRGHTD--------S 152 (406)
T ss_pred CCCCCchhhhhccc------------cceeeeeecc--CceEEEEecCCceEEEEEccchhhhhhhhcccc--------c
Confidence 34444555566776 8899999995 455788888999999999999998766666532 2
Q ss_pred ccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC
Q 012535 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (461)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (461)
+. .++|+..|+.+ ++++.|-.+++|| . +.. ..|.+.. .+|...|.+++|-|.|.
T Consensus 153 v~-------di~~~a~Gk~l------------~tcSsDl~~~LWd-~---~~~--~~c~ks~-~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 153 VF-------DISFDASGKYL------------ATCSSDLSAKLWD-F---DTF--FRCIKSL-IGHEHGVSSVFFLPLGD 206 (406)
T ss_pred ee-------EEEEecCccEE------------EecCCccchhhee-H---HHH--HHHHHHh-cCcccceeeEEEEecCC
Confidence 44 78899999885 9999999999999 3 221 3444443 79999999999999999
Q ss_pred EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccc
Q 012535 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
+++++ .|.+|+.|++.++.... ++.+|+..|..++.+.|| .++|+++.|.++++|-+.+++. ...+
T Consensus 207 ~ilS~srD~tik~We~~tg~cv~--------t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~----k~~l 273 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGYCVK--------TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQC----KAEL 273 (406)
T ss_pred eeeecccccceeEEecccceeEE--------eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchh----hhhh
Confidence 99999 79999999999765443 588899999999999999 9999999999999999988754 3344
Q ss_pred ccccCCCccccccccccceeEEEEccC---------------CCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccc
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARN---------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~---------------g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 389 (461)
..|+ -+|.+++|-|. ++++++++ |++|++||+.+ +.++.++.+|.+++.
T Consensus 274 R~hE------------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr-- 338 (406)
T KOG0295|consen 274 REHE------------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVR-- 338 (406)
T ss_pred hccc------------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceee--
Confidence 4443 67888888763 35888888 79999999997 999999999999985
Q ss_pred cccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcc
Q 012535 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSL 446 (461)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 446 (461)
.++|+|.|+||+++.+|+++++||+++++++ .+++.|+.-+..
T Consensus 339 -------------~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~ 381 (406)
T KOG0295|consen 339 -------------GVAFSPGGKYILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTS 381 (406)
T ss_pred -------------eeEEcCCCeEEEEEecCCcEEEEEeccceee-eccCCCcceeEE
Confidence 9999999999999999999999999999888 677777655443
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.9e-33 Score=230.13 Aligned_cols=257 Identities=14% Similarity=0.235 Sum_probs=218.0
Q ss_pred cCCccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCC
Q 012535 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 164 (461)
.|+..+++...+++|. +.|.|+++-|. +.+|++|+.|++++|||+.+++++.....+..
T Consensus 136 eWHapwKl~rVi~gHl------------gWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~LkltltGhi~------- 194 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHL------------GWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQLKLTLTGHIE------- 194 (460)
T ss_pred cccCcceehhhhhhcc------------ceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeEEEeecchhh-------
Confidence 4677899999999999 99999999964 67999999999999999999999888776532
Q ss_pred CCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC
Q 012535 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (461)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (461)
.+. .+++++.-.++ ++++.|+.|+.|| +... +..+.+ .||-..|.+++.+|.
T Consensus 195 -~vr-------~vavS~rHpYl------------Fs~gedk~VKCwD-Le~n------kvIR~Y-hGHlS~V~~L~lhPT 246 (460)
T KOG0285|consen 195 -TVR-------GVAVSKRHPYL------------FSAGEDKQVKCWD-LEYN------KVIRHY-HGHLSGVYCLDLHPT 246 (460)
T ss_pred -eee-------eeeecccCceE------------EEecCCCeeEEEe-chhh------hhHHHh-ccccceeEEEecccc
Confidence 233 67888887775 9999999999999 4332 334444 899999999999999
Q ss_pred CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccc
Q 012535 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (461)
Q Consensus 245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 323 (461)
-..|++| .|.++++||+++..... .+.+|...|.++.+.|.+ -.+++|+.|++|++||++.++. ..
T Consensus 247 ldvl~t~grDst~RvWDiRtr~~V~--------~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt----~~ 313 (460)
T KOG0285|consen 247 LDVLVTGGRDSTIRVWDIRTRASVH--------VLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKT----MI 313 (460)
T ss_pred ceeEEecCCcceEEEeeecccceEE--------EecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCce----eE
Confidence 9999999 89999999999766554 578999999999999988 6899999999999999999875 44
Q ss_pred ccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceee
Q 012535 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (461)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (461)
++..|. ..|.+++.+|....+|+++-..|+-|++.. +..+..+.+|...++ +
T Consensus 314 tlt~hk------------ksvral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~iin---------------t 365 (460)
T KOG0285|consen 314 TLTHHK------------KSVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAIIN---------------T 365 (460)
T ss_pred eeeccc------------ceeeEEecCCchhhhhccCCccceeccCCc-cchhhccccccceee---------------e
Confidence 555444 789999999998888888877999999995 888888999988764 7
Q ss_pred EEEecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
++.+.|+ ++++|++.|.+.+||.++|-.
T Consensus 366 l~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 366 LSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred eeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 7777554 788999999999999998843
No 39
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.1e-32 Score=212.88 Aligned_cols=286 Identities=14% Similarity=0.242 Sum_probs=225.1
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
+..+|...|.+++|+-+|..||+|+.|+++++|++...+.. ......+|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~--------- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT--------- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC---------
Confidence 34578899999999999999999999999999999865432 334567887
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+.|..++|.|. ....|++++.|++|++||++.+++.........+ + .+.|+|+|.++
T Consensus 65 ---~svdql~w~~~-~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en--------i--------~i~wsp~g~~~--- 121 (313)
T KOG1407|consen 65 ---DSVDQLCWDPK-HPDLFATASGDKTIRIWDIRSGKCTARIETKGEN--------I--------NITWSPDGEYI--- 121 (313)
T ss_pred ---cchhhheeCCC-CCcceEEecCCceEEEEEeccCcEEEEeeccCcc--------e--------EEEEcCCCCEE---
Confidence 77999999984 4569999999999999999999877665543221 1 57999999986
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+.++.|..|.+.| ......... ......++.++|+.++.+|+.. ..|.|.|......+..
T Consensus 122 ---------~~~~kdD~it~id-~r~~~~~~~--------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv- 182 (313)
T KOG1407|consen 122 ---------AVGNKDDRITFID-ARTYKIVNE--------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV- 182 (313)
T ss_pred ---------EEecCcccEEEEE-ecccceeeh--------hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc-
Confidence 9999999999988 433332211 2233567788999888887776 7899999988744433
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
.+++.|+....||.|+|+| ++||+|+.|..+.+||+...-. .+.+.... -+|..+.
T Consensus 183 -------~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC----~R~isRld------------wpVRTlS 238 (313)
T KOG1407|consen 183 -------QSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELIC----ERCISRLD------------WPVRTLS 238 (313)
T ss_pred -------cccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhh----heeecccc------------CceEEEE
Confidence 2678899999999999999 9999999999999999977543 44554443 6799999
Q ss_pred EccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC--------
Q 012535 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-------- 419 (461)
Q Consensus 349 ~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-------- 419 (461)
|+.||++||+|+ |..|-|=++++ +..+..+...... +.++|+|...+||-+++|
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vet-Gd~~~eI~~~~~t----------------~tVAWHPk~~LLAyA~ddk~~d~~re 301 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVET-GDRVWEIPCEGPT----------------FTVAWHPKRPLLAYACDDKDGDSNRE 301 (313)
T ss_pred eccCcceeeccCccceEEeEeccc-CCeEEEeeccCCc----------------eeEEecCCCceeeEEecCCCCccccc
Confidence 999999999988 58999999986 7777777643332 499999999999987754
Q ss_pred -CeEEEEecC
Q 012535 420 -NLFRVFGCS 428 (461)
Q Consensus 420 -g~i~iw~~~ 428 (461)
|.+++|-+.
T Consensus 302 ag~vKiFG~~ 311 (313)
T KOG1407|consen 302 AGTVKIFGLS 311 (313)
T ss_pred cceeEEecCC
Confidence 566666543
No 40
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=230.84 Aligned_cols=298 Identities=17% Similarity=0.226 Sum_probs=224.3
Q ss_pred eeccccccCCcccccccccceEEEEEcCCC-CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccc
Q 012535 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF 96 (461)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (461)
++..+|.+++....-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.... +...|
T Consensus 49 KleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----------------------~~~~f 105 (433)
T KOG0268|consen 49 KLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----------------------CIRTF 105 (433)
T ss_pred HHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-----------------------hhhee
Confidence 455678888888888999999999999976 789999999999999998765 55788
Q ss_pred cCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCc
Q 012535 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (461)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (461)
.+|. +.|..|++. . ..+++++.|++|+.|.++... ...... .+.+. .
T Consensus 106 ~AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p-~~tilg---------~s~~~-------g 152 (433)
T KOG0268|consen 106 KAHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP-LHTILG---------KSVYL-------G 152 (433)
T ss_pred eccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc-ceeeec---------ccccc-------c
Confidence 9998 889999997 2 589999999999999987631 111111 11111 1
Q ss_pred ceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCC
Q 012535 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDL 254 (461)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~ 254 (461)
+.-+.. .+.+++|+. .|.||| .... .+...+ .--...|.++.|+|... .|+++ +|+
T Consensus 153 Idh~~~------------~~~FaTcGe--~i~IWD-~~R~------~Pv~sm-swG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 153 IDHHRK------------NSVFATCGE--QIDIWD-EQRD------NPVSSM-SWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred cccccc------------cccccccCc--eeeecc-cccC------Ccccee-ecCCCceeEEecCCCcchheeeeccCC
Confidence 111111 122355444 588999 3222 222222 23346789999999854 55666 899
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
.|.+||+++......++ ....-+.|+|+|.. ..|++|..|..++.||++.... +.
T Consensus 211 sIvLyD~R~~~Pl~KVi---------~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~---------------p~ 265 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVI---------LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR---------------PL 265 (433)
T ss_pred ceEEEecccCCccceee---------eeccccceecCccc-cceeeccccccceehhhhhhcc---------------cc
Confidence 99999999777665442 23445789999976 8899999999999999987432 12
Q ss_pred ccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEE
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (461)
..+.+|.++|.++.|||.|+-+++|+ |.+|+||..+. +|. .+.|+++.+..|+++.||.|.+++
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~---------~~S------RdiYhtkRMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH---------GHS------RDIYHTKRMQHVFCVKYSMDSKYI 330 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccceEEEeecCC---------Ccc------hhhhhHhhhheeeEEEEeccccEE
Confidence 34456669999999999999999998 69999999874 222 356788888889999999999999
Q ss_pred EEecCCCeEEEEecCCCCcc
Q 012535 414 ATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 414 ~s~~~dg~i~iw~~~~~~~~ 433 (461)
++||+|+.|++|.....++.
T Consensus 331 ~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 331 ISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EecCCCcceeeeecchhhhc
Confidence 99999999999999876544
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=235.70 Aligned_cols=260 Identities=15% Similarity=0.237 Sum_probs=210.2
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
...|..|+|. ++|+.|++|+..|.+.+|+...-..+.+...| ...|. ++.|+++|..+
T Consensus 96 kc~V~~v~Wt--PeGRRLltgs~SGEFtLWNg~~fnFEtilQaH--------Ds~Vr-------~m~ws~~g~wm----- 153 (464)
T KOG0284|consen 96 KCPVNVVRWT--PEGRRLLTGSQSGEFTLWNGTSFNFETILQAH--------DSPVR-------TMKWSHNGTWM----- 153 (464)
T ss_pred ccceeeEEEc--CCCceeEeecccccEEEecCceeeHHHHhhhh--------cccce-------eEEEccCCCEE-----
Confidence 3669999999 56899999999999999998554444444443 33355 78999999985
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
++|+.+|.|++|+ . .. ...+.+...|...|++++|+|+...|+++ +||+|+|||....++..
T Consensus 154 -------iSgD~gG~iKyWq-p---nm----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-- 216 (464)
T KOG0284|consen 154 -------ISGDKGGMIKYWQ-P---NM----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-- 216 (464)
T ss_pred -------EEcCCCceEEecc-c---ch----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh--
Confidence 9999999999998 2 11 11122224455899999999999999999 89999999998666553
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.+.+|.-.|.+++|+|.. .++++|+.|..|++||.+++.. +.++..|. ..|..+.|+
T Consensus 217 ------vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~c----l~tlh~HK------------ntVl~~~f~ 273 (464)
T KOG0284|consen 217 ------VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSC----LATLHGHK------------NTVLAVKFN 273 (464)
T ss_pred ------eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcch----hhhhhhcc------------ceEEEEEEc
Confidence 468899999999999998 8999999999999999999986 56666655 889999999
Q ss_pred cCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC-CCEEEEecCCCeEEEEecC
Q 012535 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 351 ~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 428 (461)
|++.+|++++ |..++++|+++ .+.+.++++|...+ +++.|+|- ..+|.+|+.||.|..|.+.
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred CCCCeeEEccCCceEEEEehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccCCCceEEEecc
Confidence 9999999987 69999999995 78899999999876 49999995 5688999999999999998
Q ss_pred CCCccceeeccCCCCCccccc
Q 012535 429 EGSAESTTLEASKNPMSLFLH 449 (461)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ 449 (461)
..+.....-.+|...+-.+..
T Consensus 338 ~~~p~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 338 LEEPLGEIPPAHDGEIWSLAY 358 (464)
T ss_pred ccccccCCCcccccceeeeec
Confidence 555554455555555444433
No 42
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.5e-32 Score=246.79 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=197.3
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|+++|..++|+|+.++|++++.|+++|+|.+.+.. .+..++||.
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-----------------------~~V~y~GH~---------- 493 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-----------------------CLVIYKGHL---------- 493 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccce-----------------------eEEEecCCC----------
Confidence 66899999999999999999999999999999998765 556788999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
.+|..++|+| .|-+||+++.|++.++|........+++..|... +. ++.|+|++.++
T Consensus 494 --~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifaghlsD--------V~-------cv~FHPNs~Y~---- 550 (707)
T KOG0263|consen 494 --APVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD--------VD-------CVSFHPNSNYV---- 550 (707)
T ss_pred --cceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcccccc--------cc-------eEEECCccccc----
Confidence 8899999994 5889999999999999999988777777766432 33 78999999986
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++|+.|.++++|| + ..+...+.| .||.++|.+++|+|+|++|++| .||.|.+||+.++....
T Consensus 551 --------aTGSsD~tVRlWD-v------~~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~- 613 (707)
T KOG0263|consen 551 --------ATGSSDRTVRLWD-V------STGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK- 613 (707)
T ss_pred --------ccCCCCceEEEEE-c------CCCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh-
Confidence 9999999999999 3 234446666 8999999999999999999999 89999999999766554
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccc--ccccccc------ccccCCCccccccccc
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--DTHSKLF------EEQEAPGTRSFFTEII 341 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~h~ 341 (461)
.+.+|.+.|.++.|+.+| .+||+|+.|.+|++||+...... ...+..- +..........+....
T Consensus 614 -------~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~ 685 (707)
T KOG0263|consen 614 -------QLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKN 685 (707)
T ss_pred -------hhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecC
Confidence 577899999999999999 99999999999999998764321 0000000 0001111223344455
Q ss_pred cceeEEEEccCCCEEEEe
Q 012535 342 ASISDIKFARNGRHILSR 359 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~ 359 (461)
.+|.++.|....-.|+.|
T Consensus 686 tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 686 TPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ceEEEEEEeccceeEEec
Confidence 678888888655444443
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-31 Score=210.49 Aligned_cols=294 Identities=14% Similarity=0.157 Sum_probs=233.0
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...+|..+++.+.++.+|++|.+++.|.++.+|-...++ .+-++.||.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------rlGty~GHt--------- 52 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------RLGTYDGHT--------- 52 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------eeeeecCCC---------
Confidence 345799999999999999999999999999999877665 346899999
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+.|.|+... -+..++++|+.|.++++||+++|+.+....... .|. .+.|+++|..+
T Consensus 53 ---GavW~~Did--~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~---------~Vk-------~~~F~~~gn~~--- 108 (327)
T KOG0643|consen 53 ---GAVWCCDID--WDSKHLITGSADQTAKLWDVETGKQLATWKTNS---------PVK-------RVDFSFGGNLI--- 108 (327)
T ss_pred ---ceEEEEEec--CCcceeeeccccceeEEEEcCCCcEEEEeecCC---------eeE-------EEeeccCCcEE---
Confidence 889999988 567799999999999999999999887776542 233 67888888874
Q ss_pred ccCCCCCcccc----ccCCCcEEeeeeecccC-ccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccC
Q 012535 190 FGCASNDSSFP----PGGVSSLRLPVVVTSQE-TNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 190 ~~~~~~~~~~~----~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (461)
+++ -+..+.|.++| +.... .....++...+ ..+...++.+-|.|-+++|++| +||.|..||+++
T Consensus 109 --------l~~tD~~mg~~~~v~~fd-i~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 109 --------LASTDKQMGYTCFVSVFD-IRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------EEEehhhcCcceEEEEEE-ccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 122 13456889998 55433 22233334443 5677889999999999999999 899999999998
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (461)
+.+.+. ....|...|+.++++|+. .++++++.|.+-++||.++-+. ++++... .+
T Consensus 179 g~~~v~-------s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v----~Kty~te-------------~P 233 (327)
T KOG0643|consen 179 GKELVD-------SDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEV----LKTYTTE-------------RP 233 (327)
T ss_pred Cceeee-------chhhhccccccccccCCc-ceEEecccCccceeeeccceee----EEEeeec-------------cc
Confidence 776654 345688899999999998 9999999999999999999776 5666655 57
Q ss_pred eeEEEEccCCCEEEEec--C-CeEEEEEccC-----------CCCCeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 344 ISDIKFARNGRHILSRD--Y-MTLKLWDINM-----------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 344 v~~l~~s~~g~~l~s~~--d-~~i~vwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
|++.+++|...+++.|+ + ..|.-=+.+. ..+.+..+++|-++++ +++|+|+
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN---------------svAfhPd 298 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN---------------SVAFHPD 298 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc---------------eeEECCC
Confidence 99999999777777643 2 3333222221 1345677788888875 9999999
Q ss_pred CCEEEEecCCCeEEEEecCC
Q 012535 410 GGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 410 ~~~l~s~~~dg~i~iw~~~~ 429 (461)
|+..++|++||.|++...+.
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 99999999999999987764
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-32 Score=237.95 Aligned_cols=249 Identities=16% Similarity=0.259 Sum_probs=213.1
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..+++.|.++.|+|...+++++-.+|.|.||+.++..+ ++.+.-.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----------------------VksfeV~~----------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----------------------VKSFEVSE----------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----------------------eeeeeecc-----------
Confidence 35889999999999999999999999999999988763 35555555
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
.+|.+..|.+. .+.+++|+.|..|++|+..+++....
T Consensus 56 -~PvRa~kfiaR--knWiv~GsDD~~IrVfnynt~ekV~~---------------------------------------- 92 (794)
T KOG0276|consen 56 -VPVRAAKFIAR--KNWIVTGSDDMQIRVFNYNTGEKVKT---------------------------------------- 92 (794)
T ss_pred -cchhhheeeec--cceEEEecCCceEEEEecccceeeEE----------------------------------------
Confidence 67999999854 45999999999999999987753321
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
+.+|..-|++++.+|...+++++ +|-.|++||.+..=.+.+
T Consensus 93 -------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q- 134 (794)
T KOG0276|consen 93 -------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ- 134 (794)
T ss_pred -------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee-
Confidence 26788999999999999999999 899999999985544443
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
++++|...|++++|+|...+.+|+++.|++|++|.+.+... ..++++|. ..|+++.|-
T Consensus 135 ------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHe------------kGVN~Vdyy 192 (794)
T KOG0276|consen 135 ------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHE------------KGVNCVDYY 192 (794)
T ss_pred ------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----ceeeeccc------------cCcceEEec
Confidence 58999999999999998889999999999999999977654 45666555 889999998
Q ss_pred cC--CCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 351 RN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 351 ~~--g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
+- ..||++|+| .+|+|||.++ ..+++++++|...+. .+.|+|.-.++++|++||+++||+-
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs---------------~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVS---------------FVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred cCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccce---------------EEEecCCCcEEEEecCCccEEEecC
Confidence 74 469999875 9999999997 999999999998874 8999999999999999999999998
Q ss_pred CCCCcc
Q 012535 428 SEGSAE 433 (461)
Q Consensus 428 ~~~~~~ 433 (461)
.+-+++
T Consensus 257 ~Ty~lE 262 (794)
T KOG0276|consen 257 KTYKLE 262 (794)
T ss_pred cceehh
Confidence 875544
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-32 Score=214.46 Aligned_cols=289 Identities=15% Similarity=0.210 Sum_probs=233.2
Q ss_pred cccccccceEEEEEcC---CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhc
Q 012535 30 EEVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~---~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (461)
.=.+|+.+|-.++||| +|-+|++++.||.-.+-+-+++. .+-+|.+|.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----------------------wigtfeghk------ 59 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----------------------WIGTFEGHK------ 59 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----------------------cEEeeeccC------
Confidence 3457999999999987 88899999999998887777665 556899999
Q ss_pred cccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
+.|.+.... .|..+.++++.|-+-++||.-++.....+.... .|. .++|+.|...+
T Consensus 60 ------gavw~~~l~--~na~~aasaaadftakvw~a~tgdelhsf~hkh---------ivk-------~~af~~ds~~l 115 (334)
T KOG0278|consen 60 ------GAVWSATLN--KNATRAASAAADFTAKVWDAVTGDELHSFEHKH---------IVK-------AVAFSQDSNYL 115 (334)
T ss_pred ------cceeeeecC--chhhhhhhhcccchhhhhhhhhhhhhhhhhhhh---------eee-------eEEecccchhh
Confidence 889998887 566678888999999999988876544433211 122 67899888885
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
++|+.+..+++|| +...+.... . +.+|.+.|..+.|....+.|+++ +|++|++||.+++.
T Consensus 116 ------------ltgg~ekllrvfd-ln~p~App~-----E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt 176 (334)
T KOG0278|consen 116 ------------LTGGQEKLLRVFD-LNRPKAPPK-----E-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT 176 (334)
T ss_pred ------------hccchHHHhhhhh-ccCCCCCch-----h-hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence 9999999999999 554443222 1 48999999999999998899987 89999999999877
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
....+. .+..|+++.++++| ++| +-...+.|.+||..+-.+ ++.++.+ ..|.
T Consensus 177 ~v~sL~---------~~s~VtSlEvs~dG-~il-Tia~gssV~Fwdaksf~~----lKs~k~P-------------~nV~ 228 (334)
T KOG0278|consen 177 EVQSLE---------FNSPVTSLEVSQDG-RIL-TIAYGSSVKFWDAKSFGL----LKSYKMP-------------CNVE 228 (334)
T ss_pred EEEEEe---------cCCCCcceeeccCC-CEE-EEecCceeEEeccccccc----eeeccCc-------------cccc
Confidence 654432 46779999999998 554 455677899999988665 4455544 5799
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEE-eeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEE
Q 012535 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (461)
+..++|+...+++|+ |..++.||..+ ++.+..+ ++|.+++ .++.|+|||...++||.||+|+
T Consensus 229 SASL~P~k~~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred cccccCCCceEEecCcceEEEEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEE
Confidence 999999988888876 69999999997 7777775 7888876 4999999999999999999999
Q ss_pred EEecCCCCccc
Q 012535 424 VFGCSEGSAES 434 (461)
Q Consensus 424 iw~~~~~~~~~ 434 (461)
||....++...
T Consensus 293 lWQt~~~~~~~ 303 (334)
T KOG0278|consen 293 LWQTTPGKTYG 303 (334)
T ss_pred EEEecCCCchh
Confidence 99998876553
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-31 Score=238.42 Aligned_cols=290 Identities=11% Similarity=0.163 Sum_probs=234.8
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
+..+|...|.++++|.+...+++|+ .+.|+||+..+.+. +.++...
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kc-----------------------iRTi~~~---------- 413 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKC-----------------------IRTITCG---------- 413 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcce-----------------------eEEeccc----------
Confidence 4668999999999999988888876 55899999987763 3334333
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
-+.+..|.| .++++++|...|.+.++|+....+......| .|.++ +++.+|+++..
T Consensus 414 ----y~l~~~Fvp--gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH--------dgaIW-------si~~~pD~~g~--- 469 (888)
T KOG0306|consen 414 ----YILASKFVP--GDRYIVLGTKNGELQVFDLASASLVETIRAH--------DGAIW-------SISLSPDNKGF--- 469 (888)
T ss_pred ----cEEEEEecC--CCceEEEeccCCceEEEEeehhhhhhhhhcc--------cccee-------eeeecCCCCce---
Confidence 388999994 5679999999999999999987766655544 56677 78889999984
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEee------ecccccceeeEEeCCCCCEEEEe-CCCeEEEEEcc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY------AHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (461)
++++.|.+|++|| ........ ....+.+ .-.-...|.|+.+|||+++|+.+ -|+++++|-++
T Consensus 470 ---------vT~saDktVkfWd-f~l~~~~~-gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 470 ---------VTGSADKTVKFWD-FKLVVSVP-GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred ---------EEecCCcEEEEEe-EEEEeccC-cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 9999999999999 43222211 1111101 11234679999999999999999 89999999998
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
+.+-.. ++.||.-+|.|+..+||+ +++++|+.|.+|++|-+.-|.+ -+.+-. |..
T Consensus 539 tlKFfl--------sLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDC----HKS~fA------------HdD 593 (888)
T KOG0306|consen 539 TLKFFL--------SLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDC----HKSFFA------------HDD 593 (888)
T ss_pred ceeeee--------eecccccceeEEeccCCc-CeEEeccCCCceEEeccccchh----hhhhhc------------ccC
Confidence 665443 688999999999999998 9999999999999999988875 334444 448
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (461)
.|+++.|.|...++.+++ |+.|+-||-.. -+.++.+.+|...+ ++++.+|+|.+++++|.|..
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev---------------~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEV---------------WCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhh-hhhheeeccchhee---------------eeeEEcCCCCeEEeccCCce
Confidence 899999999888888866 79999999986 78899999998876 69999999999999999999
Q ss_pred EEEEecCC
Q 012535 422 FRVFGCSE 429 (461)
Q Consensus 422 i~iw~~~~ 429 (461)
|++|.-..
T Consensus 658 IRlwE~td 665 (888)
T KOG0306|consen 658 IRLWERTD 665 (888)
T ss_pred eEeeeccC
Confidence 99998765
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.9e-31 Score=211.40 Aligned_cols=276 Identities=18% Similarity=0.270 Sum_probs=216.9
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC-ceeEEeeeecCCCccCCCCCcccc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
+...+.+|+ +.|+.+.|+| +|.+|++|+.|..|.+|++... +-......+ .+.|.
T Consensus 39 p~m~l~gh~------------geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgH--------sgAVM-- 94 (338)
T KOG0265|consen 39 PIMLLPGHK------------GEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGDCENFWVLKGH--------SGAVM-- 94 (338)
T ss_pred hhhhcCCCc------------ceEEEEEECC--CCCeEeecCCcceEEEEeccccccceeeeccc--------cceeE--
Confidence 455678898 6699999995 7889999999999999997543 223333333 66777
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
.+.|.+++..+ ++++.|.+++.|| + ...++.+.+ ++|..-|+++.-+.-|..|+.
T Consensus 95 -----~l~~~~d~s~i------------~S~gtDk~v~~wD-~------~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 95 -----ELHGMRDGSHI------------LSCGTDKTVRGWD-A------ETGKRIRKH-KGHTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred -----eeeeccCCCEE------------EEecCCceEEEEe-c------ccceeeehh-ccccceeeecCccccCCeEEE
Confidence 78999999986 9999999999999 3 334555555 889999999885555666665
Q ss_pred -e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 251 -A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 251 -~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
+ +|+++++||++..+.. + .......++++.|..++ ..+.+|+-|+.|++||++.... .+++.+|
T Consensus 150 SgsdD~t~kl~D~R~k~~~-~--------t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~----~~~lsGh 215 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEAI-K--------TFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDG----LYTLSGH 215 (338)
T ss_pred ecCCCceEEEEeecccchh-h--------ccccceeEEEEEecccc-cceeeccccCceeeeccccCcc----eEEeecc
Confidence 5 7999999999954433 2 22246779999999998 8999999999999999998876 6777776
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCC---CCCeeEEeeccCccccccccccCCCccceeeE
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (461)
. .+|+.+..+|+|.++.+-+ |+++++||++.. ..++..+.+|...... . .+.+
T Consensus 216 ~------------DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek--------n---lL~c 272 (338)
T KOG0265|consen 216 A------------DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK--------N---LLKC 272 (338)
T ss_pred c------------CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh--------h---ccee
Confidence 6 7899999999999999954 799999999851 3447778877643210 0 1489
Q ss_pred EEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcccccccccC
Q 012535 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHFQETS 454 (461)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (461)
+|+|+++.+..|+.|..+++||....... ..+.+|...+.....++.++
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~l-yklpGh~gsvn~~~Fhp~e~ 321 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRIL-YKLPGHYGSVNEVDFHPTEP 321 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEE-EEcCCcceeEEEeeecCCCc
Confidence 99999999999999999999999876544 67888888888777776654
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=216.91 Aligned_cols=277 Identities=15% Similarity=0.256 Sum_probs=220.9
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
++...-+-|..|||||+||++|+.||.|.+|+..+++.. ..-.|+....|.-+.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr---------------KDLkYQAqd~fMMmd----------- 263 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR---------------KDLKYQAQDNFMMMD----------- 263 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhh---------------hhhhhhhhcceeecc-----------
Confidence 345567889999999999999999999999999988643 111233333455566
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
++|.|+.|+ .|...+++|+.||.|++|.+.+|.+.+.
T Consensus 264 -~aVlci~FS--RDsEMlAsGsqDGkIKvWri~tG~ClRr---------------------------------------- 300 (508)
T KOG0275|consen 264 -DAVLCISFS--RDSEMLASGSQDGKIKVWRIETGQCLRR---------------------------------------- 300 (508)
T ss_pred -cceEEEeec--ccHHHhhccCcCCcEEEEEEecchHHHH----------------------------------------
Confidence 889999999 7788999999999999999988865432
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
|-.+|+..|+++.|+.|+..++++ .|.++++.-++.++...
T Consensus 301 ------------------------------------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK-- 342 (508)
T KOG0275|consen 301 ------------------------------------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK-- 342 (508)
T ss_pred ------------------------------------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH--
Confidence 126888999999999999999998 79999999999776553
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.+.+|...|+...|.++| ..+++++.||+|++|+..+.+. +.+|+..... .+|+++..-
T Consensus 343 ------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC----~~Tfk~~~~d----------~~vnsv~~~ 401 (508)
T KOG0275|consen 343 ------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC----LSTFKPLGTD----------YPVNSVILL 401 (508)
T ss_pred ------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhh----hhhccCCCCc----------ccceeEEEc
Confidence 588999999999999999 9999999999999999999876 5566543322 578888888
Q ss_pred c-CCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 351 R-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 351 ~-~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
| +-..++.++. ++|.|.++. ++.++.+......... -.+++.+|.|.++.+.++|+.++.|.+.
T Consensus 402 PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgGd------------Fi~~~lSpkGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGGD------------FINAILSPKGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCCc------------eEEEEecCCCcEEEEEccCcEEEEEEee
Confidence 8 4467777775 999999996 7888888654433221 1378899999999999999999999999
Q ss_pred CCCccceeeccCCCCCccccccc
Q 012535 429 EGSAESTTLEASKNPMSLFLHFQ 451 (461)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~ 451 (461)
+|+.+ .++..|...+.-...+|
T Consensus 468 sG~LE-~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 468 SGKLE-RTLPVHEKDVIGLTHHP 489 (508)
T ss_pred cCcee-eeeecccccccccccCc
Confidence 99877 57777766554444443
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.2e-30 Score=241.32 Aligned_cols=257 Identities=22% Similarity=0.370 Sum_probs=205.8
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc--eeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.++.|+ ++|..+++++.|+.+++|+....+ .......+ ...|. .++|+|+++++
T Consensus 160 ~sv~~~~fs--~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h--------~~~v~-------~~~fs~d~~~l---- 218 (456)
T KOG0266|consen 160 PSVTCVDFS--PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGH--------TRGVS-------DVAFSPDGSYL---- 218 (456)
T ss_pred CceEEEEEc--CCCCeEEEccCCCcEEEeecccccchhhcccccc--------cccee-------eeEECCCCcEE----
Confidence 679999999 678899999999999999996655 22222111 22233 78999999985
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++++.|+++++|| +. ....+.+++ .+|...|++++|+|+++++++| .|++|++||+++++.. .
T Consensus 219 --------~s~s~D~tiriwd-~~-----~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~-~ 282 (456)
T KOG0266|consen 219 --------LSGSDDKTLRIWD-LK-----DDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV-R 282 (456)
T ss_pred --------EEecCCceEEEee-cc-----CCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE-E
Confidence 9999999999999 31 223455555 7999999999999999999999 8999999999974433 2
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+.+|.+.|++++|++++ .+|++++.|+.|++||+.++... ....+..+..+ .++++++|
T Consensus 283 -------~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~----------~~~~~~~f 342 (456)
T KOG0266|consen 283 -------KLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENS----------APVTSVQF 342 (456)
T ss_pred -------eeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCCC----------CceeEEEE
Confidence 578899999999999999 99999999999999999998731 12344443310 15999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+|++.+|+++. |+.+++||+.. ...+..+.+|...+.. +++...++.+.++++|+.|+.|++|++.
T Consensus 343 sp~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLVRC------------IFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CCCCcEEEEecCCCeEEEEEccC-CcceeeecccCCccee------------EecccccCCCCeEEEEeCCceEEEEeCC
Confidence 99999999987 58999999996 8889999998875211 1355668899999999999999999999
Q ss_pred CCCccceeeccC
Q 012535 429 EGSAESTTLEAS 440 (461)
Q Consensus 429 ~~~~~~~~~~~~ 440 (461)
++... ..+++|
T Consensus 410 s~~~~-~~l~~h 420 (456)
T KOG0266|consen 410 SGGIL-QRLEGH 420 (456)
T ss_pred ccchh-hhhcCC
Confidence 87554 677777
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.9e-30 Score=237.72 Aligned_cols=294 Identities=14% Similarity=0.235 Sum_probs=232.3
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
..+..|..++|+|.-.+++++-.+|.|++||..-+. ++..|..|+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------li~rFdeHd------------ 51 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------LIDRFDEHD------------ 51 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------HHhhhhccC------------
Confidence 356789999999999999999999999999987554 556788998
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
++|..++|+|+ +.+|++|+.|-.|++|+.++.++...+..|..- |. .+.|++.-..+
T Consensus 52 GpVRgv~FH~~--qplFVSGGDDykIkVWnYk~rrclftL~GHlDY--------VR-------t~~FHheyPWI------ 108 (1202)
T KOG0292|consen 52 GPVRGVDFHPT--QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--------VR-------TVFFHHEYPWI------ 108 (1202)
T ss_pred CccceeeecCC--CCeEEecCCccEEEEEecccceehhhhccccce--------eE-------EeeccCCCceE------
Confidence 99999999965 559999999999999999999888777766432 33 56788888886
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee--
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN-- 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~-- 269 (461)
++++.|.+|++|+ - ....|.... .||..-|.|..|+|....++++ -|.+|++||+..-+....
T Consensus 109 ------lSASDDQTIrIWN-w------qsr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~p 174 (1202)
T KOG0292|consen 109 ------LSASDDQTIRIWN-W------QSRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAP 174 (1202)
T ss_pred ------EEccCCCeEEEEe-c------cCCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCC
Confidence 9999999999999 2 223455554 8999999999999999999999 599999999963211100
Q ss_pred ---------------ee---cc-CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccC
Q 012535 270 ---------------IV---DV-KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 270 ---------------~~---~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
++ +. -..-++||...|+.++|+|.- .++++|+.|+.|++|.+...+..+ +.+
T Consensus 175 g~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWE--vDt------ 245 (1202)
T KOG0292|consen 175 GSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWE--VDT------ 245 (1202)
T ss_pred CCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccccee--ehh------
Confidence 00 00 002478899999999999998 799999999999999998755321 233
Q ss_pred CCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
..||.+.|.++-|+|...++++.+ |++|+|||+.. ...+++++....-- |.++-+|.
T Consensus 246 ------crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrrendRF---------------W~laahP~ 303 (1202)
T KOG0292|consen 246 ------CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRRENDRF---------------WILAAHPE 303 (1202)
T ss_pred ------hhcccCCcceEEecCccceeEecCCCccEEEEeccc-ccceeeeeccCCeE---------------EEEEecCC
Confidence 445568999999999988999855 79999999996 78888886433221 68899999
Q ss_pred CCEEEEecCCCeEEEEecCCC
Q 012535 410 GGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 410 ~~~l~s~~~dg~i~iw~~~~~ 430 (461)
.++++.|- |+-+.||.++..
T Consensus 304 lNLfAAgH-DsGm~VFkleRE 323 (1202)
T KOG0292|consen 304 LNLFAAGH-DSGMIVFKLERE 323 (1202)
T ss_pred cceeeeec-CCceEEEEEccc
Confidence 98887665 455668888743
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=6.2e-30 Score=203.63 Aligned_cols=247 Identities=15% Similarity=0.287 Sum_probs=192.1
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.|+..|.+++|+|.|++||+|+.|.++.||.-..+ ++++...+.||+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~---------------------efecv~~lEGHE------------ 105 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG---------------------EFECVATLEGHE------------ 105 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCC---------------------ceeEEeeeeccc------------
Confidence 79999999999999999999999999999997654 567889999999
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc---eeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.|++|+ .+|.+|++++.|+.|-||.+..+. +..+++.|... |. .+.|+|....+
T Consensus 106 nEVK~Vaws--~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--------VK-------~V~WHPt~dlL--- 165 (312)
T KOG0645|consen 106 NEVKCVAWS--ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--------VK-------HVIWHPTEDLL--- 165 (312)
T ss_pred cceeEEEEc--CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--------cc-------EEEEcCCccee---
Confidence 559999999 668899999999999999998543 33444444221 22 56889988775
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
++++.|.+|++|+ .+......+...+ .+|...|.+++|++.|..|+++ +|++++||...+.-.
T Consensus 166 ---------~S~SYDnTIk~~~----~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-- 229 (312)
T KOG0645|consen 166 ---------FSCSYDNTIKVYR----DEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-- 229 (312)
T ss_pred ---------EEeccCCeEEEEe----ecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--
Confidence 9999999999998 3323445666665 8999999999999999999999 899999998662211
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
..|...+..+.|. ++ .|++++.|+.|++|.-....... ....+.. .-..|...|++++
T Consensus 230 ----------~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p-~~~l~~~--------~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 230 ----------GMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEP-SWNLLAK--------KEGAHEVDVNSVQ 287 (312)
T ss_pred ----------hhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCc-hHHHHHh--------hhcccccccceEE
Confidence 1278889999999 54 89999999999999866431100 0111110 1123557899999
Q ss_pred EccC-CCEEEEec-CCeEEEEEcc
Q 012535 349 FARN-GRHILSRD-YMTLKLWDIN 370 (461)
Q Consensus 349 ~s~~-g~~l~s~~-d~~i~vwd~~ 370 (461)
|.|. ...|++|+ ||.|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 9994 56777766 5999999874
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.9e-31 Score=207.93 Aligned_cols=283 Identities=17% Similarity=0.265 Sum_probs=208.3
Q ss_pred EEEEEcC-CCCEEEEee-------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 39 SAIEFDK-SGDHLATGD-------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 39 ~~~~~s~-~g~~l~tg~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
.++.||| -.++||++. ..|++.|-++...+.+ .++....
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-----------------------~e~~s~d---------- 58 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-----------------------QECQSYD---------- 58 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-----------------------EEEEeee----------
Confidence 5789999 333444443 4688999998644322 1222222
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc-eeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
.++.+..++|++.. .+.+++++.||++++||+.... .+...+.|. ..|. ++.|.+..+..
T Consensus 59 ~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~--------~EV~-------Svdwn~~~r~~--- 119 (311)
T KOG0277|consen 59 TEDGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK--------REVY-------SVDWNTVRRRI--- 119 (311)
T ss_pred cccceeEeeecCCC-cceEEEEecCceEEEeccCCCCcchhHHHhhh--------hheE-------Eecccccccee---
Confidence 12679999999744 5689999999999999954322 222222221 2233 55666555443
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
+++++.|++|++|+ . .......++ .+|..-|...+|+|. ++.++++ .|+.+++||++..+..
T Consensus 120 --------~ltsSWD~TiKLW~-~------~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 120 --------FLTSSWDGTIKLWD-P------NRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF 183 (311)
T ss_pred --------EEeeccCCceEeec-C------CCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce
Confidence 68889999999999 2 223334455 899999999999997 6778888 7999999999976554
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
. .++.|...|.++.|+....++|++|+.|+.|+.||+++-+. ++..+ .+|.-.|..+
T Consensus 184 ~--------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~---pl~eL------------~gh~~AVRkv 240 (311)
T KOG0277|consen 184 M--------SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT---PLFEL------------NGHGLAVRKV 240 (311)
T ss_pred e--------EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc---cceee------------cCCceEEEEE
Confidence 4 35668899999999998879999999999999999998652 23444 4455889999
Q ss_pred EEccC-CCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec-CCCEEEEecCCCeEEE
Q 012535 348 KFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRV 424 (461)
Q Consensus 348 ~~s~~-g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~i 424 (461)
+|||. ...|++++ |-++||||...+...+.+...|...+. .+.|++ ++.++|+++.|+.++|
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~---------------g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC---------------GLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe---------------ccccccccCceeeecccccceee
Confidence 99995 45777788 599999999876777888888887763 777876 4679999999999999
Q ss_pred Eec
Q 012535 425 FGC 427 (461)
Q Consensus 425 w~~ 427 (461)
|+.
T Consensus 306 w~p 308 (311)
T KOG0277|consen 306 WNP 308 (311)
T ss_pred ecc
Confidence 984
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-29 Score=232.96 Aligned_cols=254 Identities=13% Similarity=0.223 Sum_probs=213.4
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
+..+|.++|..++|+|++.++++|+.|-.|++|+.++.+ ++-++.||-
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-----------------------clftL~GHl--------- 93 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-----------------------CLFTLLGHL--------- 93 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-----------------------ehhhhcccc---------
Confidence 455899999999999999999999999999999998775 567889998
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+-|..+.|++. -.+|+++|.|.+|+||++.+++++.+...|.+- |+ +..|+|....+
T Consensus 94 ---DYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHY--------VM-------cAqFhptEDlI--- 150 (1202)
T KOG0292|consen 94 ---DYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY--------VM-------CAQFHPTEDLI--- 150 (1202)
T ss_pred ---ceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceE--------EE-------eeccCCccceE---
Confidence 77999999954 459999999999999999999999999988653 44 77899988875
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccc----------------------cceeeEeeecccccceeeEEeCCCCCE
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNL----------------------VAGCRRIYAHAHDYHINSISNNSDGET 247 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (461)
++++-|.+|++|| +....... .....+..+.||...|+-++|+|.-.+
T Consensus 151 ---------VSaSLDQTVRVWD-isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 151 ---------VSASLDQTVRVWD-ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred ---------EEecccceEEEEe-ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 9999999999999 54322110 012233445899999999999999999
Q ss_pred EEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
+++| +|..|++|.... ....++ .+..+|.+.|.++-|+|.. .++++.+.|++|++||+..... +.+|.
T Consensus 221 iVSG~DDRqVKlWrmne-tKaWEv-----DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~----v~tfr 289 (1202)
T KOG0292|consen 221 IVSGADDRQVKLWRMNE-TKAWEV-----DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTS----VQTFR 289 (1202)
T ss_pred EEecCCcceeeEEEecc-ccceee-----hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccc----eeeee
Confidence 9999 899999999873 333332 2678899999999999997 8999999999999999988765 67775
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccC
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
..+ ...+.++-+|..+++++|-|+-+.||.+..
T Consensus 290 ren------------dRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 290 REN------------DRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred ccC------------CeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 554 678999999999999999998888888874
No 54
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.9e-30 Score=221.12 Aligned_cols=315 Identities=17% Similarity=0.161 Sum_probs=219.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|+..|+++++.|.|-.|++|+.|.+|++||+...... .+.++.+..-..|.
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------------~~~fr~l~P~E~h~---------- 216 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------------MRSFRQLQPCETHQ---------- 216 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------------chhhhccCcccccc----------
Confidence 4468889999999999999999999999999999876532 01122333334455
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCC-CccCCCCCccccccccCcceeecCCCccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP-EKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
|++++|++ .+..|++.+.....+|+|-...+..........- ......|-+. ...+.+|+|..+..
T Consensus 217 ----i~sl~ys~--Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia----~lt~g~whP~~k~~--- 283 (641)
T KOG0772|consen 217 ----INSLQYSV--TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIA----ELTCGCWHPDNKEE--- 283 (641)
T ss_pred ----cceeeecC--CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCcee----eeeccccccCcccc---
Confidence 99999995 4668999998899999997766554444322110 0000111111 11166888887754
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+++++.||++++|+ +......... .......+....+..++|++++++||+| .||.|.+|+........
T Consensus 284 --------FlT~s~DgtlRiWd-v~~~k~q~qV-ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p 353 (641)
T KOG0772|consen 284 --------FLTCSYDGTLRIWD-VNNTKSQLQV-IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP 353 (641)
T ss_pred --------eEEecCCCcEEEEe-cCCchhheeE-EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc
Confidence 79999999999999 5433321111 1111124556788999999999999999 89999999985332211
Q ss_pred eeeccCCCCCCCCCc--ceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 269 NIVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
.+ . .-..|.. .|+||.|+++| ++|++-+.|+++++||+++.... +....+-..+ .+-+.
T Consensus 354 ~~-~----vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkp---L~~~tgL~t~----------~~~td 414 (641)
T KOG0772|consen 354 VM-K----VKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKP---LNVRTGLPTP----------FPGTD 414 (641)
T ss_pred ce-E----eeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccc---hhhhcCCCcc----------CCCCc
Confidence 11 0 1234655 89999999999 99999999999999999986542 3333222111 35688
Q ss_pred EEEccCCCEEEEec-----C--CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC
Q 012535 347 IKFARNGRHILSRD-----Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (461)
Q Consensus 347 l~~s~~g~~l~s~~-----d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (461)
++|||+.++|++|. . +.+.+||..+ -..++.+......+ ..+.|+|.=+.|..|+.|
T Consensus 415 c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 415 CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred cccCCCceEEEecccccCCCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCC
Confidence 99999999999873 2 7899999886 56666665544333 489999998888889999
Q ss_pred CeEEEEecCC
Q 012535 420 NLFRVFGCSE 429 (461)
Q Consensus 420 g~i~iw~~~~ 429 (461)
|.++||==.+
T Consensus 479 G~~~vyYdp~ 488 (641)
T KOG0772|consen 479 GTAHVYYDPN 488 (641)
T ss_pred CceEEEECcc
Confidence 9998874433
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=7.8e-31 Score=212.69 Aligned_cols=314 Identities=16% Similarity=0.182 Sum_probs=224.7
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|..++.+.+||+||.++|||+.|-.|+|.|++..-....++....+.. ... .-.+.+|-.|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~--qa~---hPvIRTlYDH~----------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT--QAR---HPVIRTLYDHV----------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc--ccC---CceEeehhhcc-----------
Confidence 45999999999999999999999999999999873321111111111110 011 12556677777
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
+.|+++.|+|. ...|++|+.|++|+++|+.....++..+.-.. ...+. +++|+|.|.++
T Consensus 173 -devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd------~~~vr-------siSfHPsGefl----- 231 (430)
T KOG0640|consen 173 -DEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAFKVFQD------TEPVR-------SISFHPSGEFL----- 231 (430)
T ss_pred -Ccccceeecch--hheEEeccCCCeEEEEecccHHHHHHHHHhhc------cceee-------eEeecCCCceE-----
Confidence 77999999964 56999999999999999976433332221110 11233 88999999986
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
++|..-..+++|| +.....-....+ ..+|.+.|+++.+++.+++.+++ .||.|++||--.. .+++.
T Consensus 232 -------lvgTdHp~~rlYd-v~T~QcfvsanP----d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t 298 (430)
T KOG0640|consen 232 -------LVGTDHPTLRLYD-VNTYQCFVSANP----DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRT 298 (430)
T ss_pred -------EEecCCCceeEEe-ccceeEeeecCc----ccccccceeEEEecCCccEEEEeccCCcEEeeccccH-HHHHH
Confidence 9999999999999 433322111111 26899999999999999999999 7999999997744 34332
Q ss_pred eccCCCCCCCC-CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 271 VDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 271 ~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+ -..| ...|.+..|..++ +++++.+.|..+++|.+.+++.+ ..+.+... ++...--+...|
T Consensus 299 ~------~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l----~~YtGAg~-------tgrq~~rtqAvF 360 (430)
T KOG0640|consen 299 I------GNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRML----KEYTGAGT-------TGRQKHRTQAVF 360 (430)
T ss_pred H------HhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceE----EEEecCCc-------ccchhhhhhhhh
Confidence 1 1224 4678999999999 99999999999999999999873 33333210 000112344567
Q ss_pred ccCCCEEEEecC--CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 350 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 350 s~~g~~l~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
+....|++.-++ +.++-||.++..+....-.+|.+.++ .+.-||.+.-+++|+.|-++++|--
T Consensus 361 NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R---------------~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 361 NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR---------------WIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cCccceEEccccccCceeeccccchhhhhhcccCCCCCce---------------EEEeCCCCCceeeecccceeeeeee
Confidence 777778887654 89999999974333334457887764 7889999999999999999999964
Q ss_pred C
Q 012535 428 S 428 (461)
Q Consensus 428 ~ 428 (461)
+
T Consensus 426 r 426 (430)
T KOG0640|consen 426 R 426 (430)
T ss_pred c
Confidence 3
No 56
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.1e-28 Score=228.61 Aligned_cols=283 Identities=15% Similarity=0.180 Sum_probs=200.6
Q ss_pred eeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccccc
Q 012535 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (461)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (461)
||.++|++... .-.+-..|.....++++..+++++.+.....|+..++..+ ..+...+.. + .....+.
T Consensus 5 k~rh~~g~~~k--~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~~----~--~~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPAR--PDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGKL----A--SNPPILL 72 (493)
T ss_pred cccccccccCC--cccceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eeccccccC----C--CCCceEe
Confidence 56677776544 2235567778888888878888888888889987654311 001111100 0 0112367
Q ss_pred CCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcc
Q 012535 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (461)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (461)
+|. +.|++++|+|. ++.+|++|+.|++|++||+.++......
T Consensus 73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------- 114 (493)
T PTZ00421 73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------- 114 (493)
T ss_pred CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCcccccc-------------------------
Confidence 888 88999999962 5679999999999999998754311000
Q ss_pred eeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC-CEEEEe-CCCe
Q 012535 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLR 255 (461)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~ 255 (461)
..+... +.+|...|.+++|+|++ ++|+++ .|+.
T Consensus 115 --------------------------------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 115 --------------------------------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred --------------------------------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 000111 36899999999999985 688888 8999
Q ss_pred EEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccc
Q 012535 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (461)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (461)
|++||++++.... .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++. +..+..|..
T Consensus 150 VrIWDl~tg~~~~--------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~----- 211 (493)
T PTZ00421 150 VNVWDVERGKAVE--------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI----VSSVEAHAS----- 211 (493)
T ss_pred EEEEECCCCeEEE--------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE----EEEEecCCC-----
Confidence 9999998654332 356789999999999998 9999999999999999998765 445555431
Q ss_pred cccccccceeEEEEccCCCEEEE-e----cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 336 FFTEIIASISDIKFARNGRHILS-R----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 336 ~~~~h~~~v~~l~~s~~g~~l~s-~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
..+..+.|.+++..+++ | .|+.|++||++....++.....+.... +....|++++
T Consensus 212 ------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~ 271 (493)
T PTZ00421 212 ------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDT 271 (493)
T ss_pred ------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCC
Confidence 23456789998777776 3 158999999986455555444333221 1356789999
Q ss_pred CEEEEec-CCCeEEEEecCCCCcc
Q 012535 411 GRVATGS-YSNLFRVFGCSEGSAE 433 (461)
Q Consensus 411 ~~l~s~~-~dg~i~iw~~~~~~~~ 433 (461)
++|++|+ .|+.|++||+.+++..
T Consensus 272 ~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeCCceE
Confidence 9999887 5999999999988654
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-28 Score=197.46 Aligned_cols=265 Identities=19% Similarity=0.261 Sum_probs=200.4
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
-.+.|+++.|+++|.+|++++.|.+++|||..+++. ..++..++ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----------------------~~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----------------------VKTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----------------------eeEeeccc------------c
Confidence 467899999999999999999999999999988763 34555554 4
Q ss_pred ceEEEEEeecCCCcEEEEEe--CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 114 KINKIRWCQSANSALYLLST--NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
.|..++|.. ....++.++ .|.+|+..++.+++..+
T Consensus 58 G~~~~~Fth--~~~~~i~sStk~d~tIryLsl~dNkylR----------------------------------------- 94 (311)
T KOG1446|consen 58 GVDLACFTH--HSNTVIHSSTKEDDTIRYLSLHDNKYLR----------------------------------------- 94 (311)
T ss_pred cccEEEEec--CCceEEEccCCCCCceEEEEeecCceEE-----------------------------------------
Confidence 588889984 334555555 48888888877665433
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
. +.||...|++++.+|-++.++++ .|++|++||++..+....+
T Consensus 95 -----------------------------------Y-F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 95 -----------------------------------Y-FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred -----------------------------------E-cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 1 37899999999999999999999 7999999999955433221
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
+...-..++|+|.| -++|++.....|++||+|.-..- +..++.... +-....+.+.||
T Consensus 139 ----------~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i~~---------~~~~ew~~l~FS 196 (311)
T KOG1446|consen 139 ----------NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSITD---------NDEAEWTDLEFS 196 (311)
T ss_pred ----------ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEccCC---------CCccceeeeEEc
Confidence 23334578999999 89999988889999999875321 122222220 011568999999
Q ss_pred cCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 351 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 351 ~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
|||++|+.++. +.+++.|.-. |..+..+.++......- .+.+|+||++++++|+.||+|.+|++++
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 99999998775 8999999986 88999998887643100 3789999999999999999999999999
Q ss_pred CCccceeeccCCCCCccc
Q 012535 430 GSAESTTLEASKNPMSLF 447 (461)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~ 447 (461)
+.........+..++...
T Consensus 264 g~~v~~~~~~~~~~~~~~ 281 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCV 281 (311)
T ss_pred CcEeeEecCCCCCCcccc
Confidence 987744443344444433
No 58
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-29 Score=221.64 Aligned_cols=278 Identities=16% Similarity=0.275 Sum_probs=217.8
Q ss_pred eEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEE
Q 012535 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (461)
..-+.|+ ..+.||+|... .|++|+..++... .+..+. + ..|++
T Consensus 180 ~nlldWs-s~n~laValg~-~vylW~~~s~~v~---------------------~l~~~~--~------------~~vtS 222 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQ-SVYLWSASSGSVT---------------------ELCSFG--E------------ELVTS 222 (484)
T ss_pred hhHhhcc-cCCeEEEEecc-eEEEEecCCCceE---------------------EeEecC--C------------CceEE
Confidence 3456777 45588887644 7999998877532 122222 3 66999
Q ss_pred EEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCc
Q 012535 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (461)
Q Consensus 118 v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (461)
+.|+ ++|.+|++|..+|.|.|||..+.+........ ..+.+. +++|. +..
T Consensus 223 v~ws--~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-------h~~rvg-------~laW~--~~~------------ 272 (484)
T KOG0305|consen 223 VKWS--PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-------HASRVG-------SLAWN--SSV------------ 272 (484)
T ss_pred EEEC--CCCCEEEEeecCCeEEEEehhhccccccccCC-------cCceeE-------EEecc--Cce------------
Confidence 9999 66889999999999999999877655544441 022233 56666 332
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCC
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (461)
+.+|+.++.|..+| +...+.... ...+|...|..++|++++.+||+| .|+.+.|||....+..+
T Consensus 273 lssGsr~~~I~~~d-vR~~~~~~~------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~-------- 337 (484)
T KOG0305|consen 273 LSSGSRDGKILNHD-VRISQHVVS------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF-------- 337 (484)
T ss_pred EEEecCCCcEEEEE-Eecchhhhh------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE--------
Confidence 48999999999999 544332222 147899999999999999999999 89999999996555554
Q ss_pred CCCCCCcceEEEEEeCCCCCeEEEEe--cCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCC
Q 012535 277 NMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (461)
Q Consensus 277 ~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~ 354 (461)
.+.+|.+.|.+++|+|-...+||+|+ .|+.|++||..++.. +...... +.|.+|.|++..+
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~----i~~vdtg-------------sQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR----IDSVDTG-------------SQVCSLIWSKKYK 400 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE----ecccccC-------------CceeeEEEcCCCC
Confidence 46779999999999998778999875 499999999998876 4444443 5799999999887
Q ss_pred EEEEe---cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 355 HILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 355 ~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
-|+++ +++.|.||+..+ .+++..+.+|..-+ ..++++|||..+++|+.|.++++|++-..
T Consensus 401 Ei~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEecCCCCCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 77764 248999999996 88899999999865 59999999999999999999999999764
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=221.91 Aligned_cols=356 Identities=13% Similarity=0.183 Sum_probs=241.5
Q ss_pred CceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccc
Q 012535 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (461)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
.+.|++.. +.......+|..+|+++.|+..|..||+|+.|+.|.+||+-.... .
T Consensus 89 Vqif~~~s---~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-----------------------l 142 (888)
T KOG0306|consen 89 VQIFSLES---EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-----------------------L 142 (888)
T ss_pred EEeeccCC---CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-----------------------e
Confidence 34566553 233445678999999999999999999999999999999876542 2
Q ss_pred ccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccc
Q 012535 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (461)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (461)
..+.||+ +.|+..-|. .+...+++.+.|+.|++||+++..+..+.-.+... ++.....
T Consensus 143 ~rL~GHk------------d~iT~~~F~--~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~E--------iw~l~~~ 200 (888)
T KOG0306|consen 143 FRLRGHK------------DSITQALFL--NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGE--------IWALVLD 200 (888)
T ss_pred EEeecch------------HHHhHHhcc--CCCeEEEEeccCceEEEEecccceeeeEEecccce--------EEEEEEe
Confidence 4688999 889999998 44678999999999999999998776665443221 2200000
Q ss_pred c--------------CcceeecCC-------------Cccc------c-cccCCCCCccccccCCCcEEeeee-------
Q 012535 174 A--------------IPKSYMANG-------------GCGE------R-NFGCASNDSSFPPGGVSSLRLPVV------- 212 (461)
Q Consensus 174 ~--------------~~~~~~~~g-------------~~~~------~-~~~~~~~~~~~~~~~~~~i~i~~~------- 212 (461)
. -.+++..|. .... + +....+.-+++.-+.|..+.+|.+
T Consensus 201 ~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~ 280 (888)
T KOG0306|consen 201 EKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIA 280 (888)
T ss_pred cceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHH
Confidence 0 011111111 1000 0 000111112222223333322221
Q ss_pred ----------------------------------------------------------------------ecccCccccc
Q 012535 213 ----------------------------------------------------------------------VTSQETNLVA 222 (461)
Q Consensus 213 ----------------------------------------------------------------------~~~~~~~~~~ 222 (461)
+.. ......
T Consensus 281 k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~-s~~~~p 359 (888)
T KOG0306|consen 281 KILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN-SGKTSP 359 (888)
T ss_pred HHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc-CCCCCc
Confidence 111 000000
Q ss_pred ee---eEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceee----------------------------e
Q 012535 223 GC---RRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI----------------------------V 271 (461)
Q Consensus 223 ~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~----------------------------~ 271 (461)
.+ ......+|...|++++++.+...+++|..+.+++|+..+.+....+ +
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVF 439 (888)
T ss_pred cccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEE
Confidence 00 0112368999999999999999999998899999999865433221 1
Q ss_pred ccC----CCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccc---------cccccccccccCCCcccccc
Q 012535 272 DVK----PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC---------DTHSKLFEEQEAPGTRSFFT 338 (461)
Q Consensus 272 ~~~----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 338 (461)
++- ..+.+.|.+.|++++.+|++ ..+++|+.|.+|++||..--... -.+.++++.
T Consensus 440 dlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel----------- 507 (888)
T KOG0306|consen 440 DLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL----------- 507 (888)
T ss_pred EeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-----------
Confidence 111 02356799999999999999 99999999999999997431110 001122222
Q ss_pred ccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec
Q 012535 339 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (461)
Q Consensus 339 ~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (461)
...|.++.+||||++|+++- |++++||-+++ -+..-.+-||.-++ .++..+||+++++|||
T Consensus 508 --~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgS 569 (888)
T KOG0306|consen 508 --EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGS 569 (888)
T ss_pred --cccEEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEecc
Confidence 26799999999999999986 89999999996 77778888999876 5999999999999999
Q ss_pred CCCeEEEEecCCCCccceeeccCCCCCccccc
Q 012535 418 YSNLFRVFGCSEGSAESTTLEASKNPMSLFLH 449 (461)
Q Consensus 418 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 449 (461)
.|.+|++|-++=|.+- ..+-+|.+.+.....
T Consensus 570 ADKnVKiWGLdFGDCH-KS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 570 ADKNVKIWGLDFGDCH-KSFFAHDDSVMSVQF 600 (888)
T ss_pred CCCceEEeccccchhh-hhhhcccCceeEEEE
Confidence 9999999999998776 567777777554433
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=212.24 Aligned_cols=292 Identities=14% Similarity=0.241 Sum_probs=222.1
Q ss_pred CCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhh
Q 012535 26 RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (461)
Q Consensus 26 ~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (461)
+.....-.|.+.|..+.|-++...|++|+.|..|++|++...+. ....++.|..
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~----- 219 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL----- 219 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC-----
Confidence 33334556999999999999988999999999999999876642 2555677776
Q ss_pred ccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
+.|+.+.|. .++.++++++.|+.+++|++...+....+..|.. .|. ++.|......
T Consensus 220 -------g~it~~d~d--~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd--------kVt-------~ak~~~~~~~ 275 (459)
T KOG0288|consen 220 -------GNITSIDFD--SDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD--------KVT-------AAKFKLSHSR 275 (459)
T ss_pred -------CCcceeeec--CCCceEEeecCCCceeeeeccchhhhhhhccccc--------cee-------eehhhccccc
Confidence 779999998 6688999999999999999999888777776533 233 3344333332
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~ 264 (461)
+++|+.|.+|++|| +.. ..|.+..+.+ ..+.+|+.+ ...+++| .|++|++||.+..
T Consensus 276 ------------vVsgs~DRtiK~WD-l~k------~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 276 ------------VVSGSADRTIKLWD-LQK------AYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred ------------eeeccccchhhhhh-hhh------hheecccccc--ccccceEec--ceeeeecccccceEEEeccCC
Confidence 39999999999999 533 4444444333 344555554 5567888 7999999999866
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
..... .+ ..+.|+++..++++ ..|.+++.|.++.+.|+++...+ .++.... +..+ ...
T Consensus 333 ~~~~s--------v~-~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA~g------~k~a--sDw 390 (459)
T KOG0288|consen 333 DKTRS--------VP-LGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSAEG------FKCA--SDW 390 (459)
T ss_pred ceeeE--------ee-cCcceeeEeeccCC-eEEeeecCCCceeeeecccccEE----EEeeccc------cccc--ccc
Confidence 55443 22 34589999999999 78888899999999999998753 3333221 1111 348
Q ss_pred eEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEE
Q 012535 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (461)
+.+.|||++.|+++|+ ||.|+||++.+ +++...+....... .|++++|+|.|..|++++.++.+.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceE
Confidence 9999999999999987 79999999996 78777776544331 246999999999999999999999
Q ss_pred EEe
Q 012535 424 VFG 426 (461)
Q Consensus 424 iw~ 426 (461)
+|.
T Consensus 457 lW~ 459 (459)
T KOG0288|consen 457 LWT 459 (459)
T ss_pred ecC
Confidence 993
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=4.1e-28 Score=206.97 Aligned_cols=267 Identities=16% Similarity=0.273 Sum_probs=195.8
Q ss_pred ccccccceEEEEEcCCC-CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.+.|.+.|+.+...|+. ..+|+++..+.|.|||......... ...+.++...+.+|+
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-------------~~~~~~Pdl~L~gH~--------- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-------------ASGECRPDLRLKGHE--------- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-------------ccccCCCceEEEeec---------
Confidence 35699999999999954 5788889999999999875432200 001344555778888
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..-.+++|++... ..+++++.|++|++||+...... ++.
T Consensus 178 ---~eg~glsWn~~~~-g~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~~---- 216 (422)
T KOG0264|consen 178 ---KEGYGLSWNRQQE-GTLLSGSDDHTICLWDINAESKE---------------------------------DKV---- 216 (422)
T ss_pred ---ccccccccccccc-eeEeeccCCCcEEEEeccccccC---------------------------------Ccc----
Confidence 3367899997554 48999999999999998754321 000
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
..+ +..+.+|...|..++|++... +|+++ +|+.+.|||+++....
T Consensus 217 --------------------------------~~p-~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 217 --------------------------------VDP-KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred --------------------------------ccc-eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 001 112389999999999999754 45555 8999999999963211
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
.. ....+|.+.|+|++|+|.+..+||+|+.|++|++||+|+-.. .++++++|. ..|.+|
T Consensus 264 ~~------~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~------------dev~~V 322 (422)
T KOG0264|consen 264 PS------HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHE------------DEVFQV 322 (422)
T ss_pred Cc------ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCC------------cceEEE
Confidence 11 246779999999999998879999999999999999998654 366777666 789999
Q ss_pred EEccCC-CEEEE-ecCCeEEEEEccCCCCC-------------eeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 348 KFARNG-RHILS-RDYMTLKLWDINMDSGP-------------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 348 ~~s~~g-~~l~s-~~d~~i~vwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
.|+|.. ..||+ |.|+.+.|||+..-++. +..--||...+ .++.|+|...+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW 387 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPW 387 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCe
Confidence 999965 45555 45899999999762222 23333444443 48999998764
Q ss_pred -EEEecCCCeEEEEecCC
Q 012535 413 -VATGSYSNLFRVFGCSE 429 (461)
Q Consensus 413 -l~s~~~dg~i~iw~~~~ 429 (461)
|+|.++|+.+.||+...
T Consensus 388 ~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEecCCceEEEeeccc
Confidence 67889999999999874
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=220.87 Aligned_cols=280 Identities=13% Similarity=0.185 Sum_probs=221.0
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
+...+.|..|. +.++++++.+++|++|+..++.. ....+.+|. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------g 250 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------G 250 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------C
Confidence 57788999999 55899999999999999887653 334489999 8
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.|.++++. ..+.++++|+.|.++++||..++.+...+..+.. .+. ...-....
T Consensus 251 ~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s--------tv~---------~~~~~~~~-------- 303 (537)
T KOG0274|consen 251 GVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS--------SVR---------CLTIDPFL-------- 303 (537)
T ss_pred CceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCc--------eEE---------EEEccCce--------
Confidence 89999997 3467999999999999999999999988886632 111 22222222
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+++|+.|.+|++|+ +. ...+...+ .+|...|+++..+ +.++++| .|++|++||+.+.+...
T Consensus 304 ----~~sgs~D~tVkVW~-v~------n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---- 365 (537)
T KOG0274|consen 304 ----LVSGSRDNTVKVWD-VT------NGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---- 365 (537)
T ss_pred ----EeeccCCceEEEEe-cc------CcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee----
Confidence 47889999999999 43 24455554 6799999999987 7788998 89999999999555443
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCc-ccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+.+|...|.++.+.+. ..+++|+.|++|++||+++. +. +.++..|. .-+..+.+
T Consensus 366 ----sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c----~~tl~~h~------------~~v~~l~~-- 421 (537)
T KOG0274|consen 366 ----SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC----IHTLQGHT------------SLVSSLLL-- 421 (537)
T ss_pred ----eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhh----hhhhcCCc------------cccccccc--
Confidence 68889999999998875 58999999999999999998 43 66766664 55655554
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeec-cCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
.+++|++++ |+.|++||... +++++++.++ ...+ ..+++. ...+++++.||.+++||+++
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ccceeEeccccccEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCeeEEEeccc
Confidence 578999976 79999999996 8999999884 3333 244444 56888999999999999999
Q ss_pred CCcccee
Q 012535 430 GSAESTT 436 (461)
Q Consensus 430 ~~~~~~~ 436 (461)
++.....
T Consensus 484 ~~~~~~l 490 (537)
T KOG0274|consen 484 GTLIRTL 490 (537)
T ss_pred Cchhhhh
Confidence 9876533
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=5.8e-29 Score=213.48 Aligned_cols=277 Identities=16% Similarity=0.204 Sum_probs=216.2
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccC-CceeEEeeeecCCCccCCCCCcccc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
....+.+|. ..|+++.|.|. .+.+|++++.|+.|+||++.. +++.+.+..|.. +|.
T Consensus 206 ~~~~~~gH~------------kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k--------~Vr-- 262 (503)
T KOG0282|consen 206 LSHNLSGHT------------KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK--------PVR-- 262 (503)
T ss_pred heeeccCCc------------cccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchh--------hhh--
Confidence 445678888 88999999973 478999999999999999976 777777777643 344
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC-CEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFI 249 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~ 249 (461)
.++|+.+|..+ ++++.|+.+++|| .+ .+++...+ .-...+.|+.|+|++ +.|+
T Consensus 263 -----d~~~s~~g~~f------------LS~sfD~~lKlwD----tE---TG~~~~~f--~~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 263 -----DASFNNCGTSF------------LSASFDRFLKLWD----TE---TGQVLSRF--HLDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred -----hhhccccCCee------------eeeecceeeeeec----cc---cceEEEEE--ecCCCceeeecCCCCCcEEE
Confidence 77999999984 9999999999999 22 34444443 223467899999998 7888
Q ss_pred Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
+| .|+.|+.||+++++... .+..|-+.|..+.|-+++ +.+++.+.|+.++||+.+....... +.....
T Consensus 317 ~G~sd~ki~~wDiRs~kvvq--------eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~-i~~~~~- 385 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQ--------EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKN-IADPEM- 385 (503)
T ss_pred EecCCCcEEEEeccchHHHH--------HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchh-hcchhh-
Confidence 88 89999999999776432 455688999999999999 9999999999999999988754211 111111
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCC--CCCeeEEeeccCccccccccccCCCccceeeEE
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
-...++..+|++.++++-+ |+.|.+|.+... ....+.+++|...... ..+.
T Consensus 386 -------------hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-------------~~v~ 439 (503)
T KOG0282|consen 386 -------------HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-------------CQVD 439 (503)
T ss_pred -------------ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce-------------eeEE
Confidence 3477899999999999955 799999987631 2445677888755421 2799
Q ss_pred EecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcccccccccCC
Q 012535 406 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHFQETSS 455 (461)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
|||||++|++|+.||.+.+||.++-+.. ..++.|..+......++.-++
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~-~~lkah~~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLV-SKLKAHDQPCIGVDWHPVEPS 488 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhh-hccccCCcceEEEEecCCCcc
Confidence 9999999999999999999999988665 788888888777766665443
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-28 Score=194.03 Aligned_cols=245 Identities=17% Similarity=0.276 Sum_probs=193.3
Q ss_pred cccceEEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 34 EVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 34 h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
-.+.+..++|+++ .+.+++++.||+++|||+... -.++..++.|+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----------------------s~Pi~~~kEH~------------ 104 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----------------------SKPIHKFKEHK------------ 104 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC----------------------CcchhHHHhhh------------
Confidence 4678999999994 568999999999999995432 13667889998
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.++.|++ .++..+++++.|++|++|+...+.-..++..+ ...|+ ..+|+|....+
T Consensus 105 ~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh--------~~~Iy-------~a~~sp~~~nl------ 162 (311)
T KOG0277|consen 105 REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH--------NSCIY-------QAAFSPHIPNL------ 162 (311)
T ss_pred hheEEecccc-ccceeEEeeccCCceEeecCCCCcceEeecCC--------ccEEE-------EEecCCCCCCe------
Confidence 5599999997 45678888999999999999887766665554 33455 66788876654
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
+++++.|+.+++|| +..... .+. +..|...+.++.|+.- .+.+++| .|+.|+.||++..+.+..
T Consensus 163 -----fas~Sgd~~l~lwd-vr~~gk-----~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~- 228 (311)
T KOG0277|consen 163 -----FASASGDGTLRLWD-VRSPGK-----FMS--IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF- 228 (311)
T ss_pred -----EEEccCCceEEEEE-ecCCCc-----eeE--EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccce-
Confidence 78999999999999 544322 111 3788899999999975 5667777 799999999997765543
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.+.+|.-.|+.+.|+|....+||+++.|=++||||...+..+ +.+.+.| +..+..+.|+
T Consensus 229 ------eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---~e~~~~H------------tEFv~g~Dws 287 (311)
T KOG0277|consen 229 ------ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---IETVDHH------------TEFVCGLDWS 287 (311)
T ss_pred ------eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh---hhhhhcc------------ceEEeccccc
Confidence 578899999999999988789999999999999999865432 3444444 4789999999
Q ss_pred c-CCCEEEEec-CCeEEEEEc
Q 012535 351 R-NGRHILSRD-YMTLKLWDI 369 (461)
Q Consensus 351 ~-~g~~l~s~~-d~~i~vwd~ 369 (461)
+ ++.++|+.+ |..++||+-
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 8 667888865 799999984
No 65
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.2e-29 Score=208.90 Aligned_cols=233 Identities=15% Similarity=0.286 Sum_probs=188.2
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.|+.+. ...+++|..|++|++||.+...+...+..| .|+|. ++.| +.+.
T Consensus 198 kgVYClQYD----D~kiVSGlrDnTikiWD~n~~~c~~~L~GH--------tGSVL-------CLqy--d~rv------- 249 (499)
T KOG0281|consen 198 KGVYCLQYD----DEKIVSGLRDNTIKIWDKNSLECLKILTGH--------TGSVL-------CLQY--DERV------- 249 (499)
T ss_pred CceEEEEec----chhhhcccccCceEEeccccHHHHHhhhcC--------CCcEE-------eeec--cceE-------
Confidence 669999985 458999999999999999988877777665 44554 3333 3344
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
+++|+.|.+|++|| +.+ .++..++ -+|...|..+.|+. .+++++ .|.++.+||+...... .+.
T Consensus 250 -----iisGSSDsTvrvWD-v~t------ge~l~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i-t~r 313 (499)
T KOG0281|consen 250 -----IVSGSSDSTVRVWD-VNT------GEPLNTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI-TLR 313 (499)
T ss_pred -----EEecCCCceEEEEe-ccC------CchhhHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH-HHH
Confidence 49999999999999 433 3334443 68999999999974 478888 7999999999865422 111
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
..+-+|...|+.+.|+. +++++++.|.+|++|++.+.+. ++++.+|. ..|.|+.+
T Consensus 314 ----rVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef----vRtl~gHk------------RGIAClQY-- 368 (499)
T KOG0281|consen 314 ----RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF----VRTLNGHK------------RGIACLQY-- 368 (499)
T ss_pred ----HHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceee----ehhhhccc------------ccceehhc--
Confidence 24678999999999984 6999999999999999999886 77877776 67888777
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
.|+++++|+ |++|++||+.. +.++..+++|+..+. ++.| |.+.+++|++||.|+|||+.++
T Consensus 369 r~rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvR---------------ciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 369 RDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVR---------------CIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred cCeEEEecCCCceEEEEeccc-cHHHHHHhchHHhhh---------------heee--cCceeeeccccceEEEEecccc
Confidence 588999986 79999999996 999999999999875 7777 5778999999999999999977
Q ss_pred Cc
Q 012535 431 SA 432 (461)
Q Consensus 431 ~~ 432 (461)
..
T Consensus 431 ld 432 (499)
T KOG0281|consen 431 LD 432 (499)
T ss_pred cC
Confidence 43
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.4e-27 Score=209.85 Aligned_cols=256 Identities=23% Similarity=0.393 Sum_probs=198.1
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.+|++++|+| ++.++++++.||.|++|++.+++.......+. ..+. .+.|.|+++.+
T Consensus 10 ~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~--------~~i~-------~~~~~~~~~~l------ 66 (289)
T cd00200 10 GGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRTLKGHT--------GPVR-------DVAASADGTYL------ 66 (289)
T ss_pred CCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEEEecCC--------ccee-------EEEECCCCCEE------
Confidence 8899999994 57799999999999999998876444443321 1222 56888888764
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++++.++.+++|+ +... .....+ ..|...+.++.|++++++++++ .++.|.+||+++.+...
T Consensus 67 ------~~~~~~~~i~i~~-~~~~------~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--- 129 (289)
T cd00200 67 ------ASGSSDKTIRLWD-LETG------ECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT--- 129 (289)
T ss_pred ------EEEcCCCeEEEEE-cCcc------cceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE---
Confidence 8999999999999 4332 122222 5777899999999999899888 59999999998544332
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+..|...+.+++|+|++ .++++++.|+.|++||++.++. +..+..+. ..+.++.|+|
T Consensus 130 -----~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~------------~~i~~~~~~~ 187 (289)
T cd00200 130 -----TLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKC----VATLTGHT------------GEVNSVAFSP 187 (289)
T ss_pred -----EeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEcccccc----ceeEecCc------------cccceEEECC
Confidence 244688899999999997 8888888899999999987654 34444433 6799999999
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+++.+++++ ++.|++||++. ++.+..+..|...+ .+++|++++.++++++.||.|++|++.++
T Consensus 188 ~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcCEEEEecCCCcEEEEECCC-CceecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 998888866 69999999986 77777776676544 48999999999999988999999999977
Q ss_pred CccceeeccCCCCCccc
Q 012535 431 SAESTTLEASKNPMSLF 447 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~ 447 (461)
+.. ..+..+...+...
T Consensus 252 ~~~-~~~~~~~~~i~~~ 267 (289)
T cd00200 252 ECV-QTLSGHTNSVTSL 267 (289)
T ss_pred eeE-EEccccCCcEEEE
Confidence 554 4455555544443
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.5e-28 Score=211.17 Aligned_cols=264 Identities=17% Similarity=0.244 Sum_probs=191.8
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce--eEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.++++. +.|.+|++|+.|-+|++||+..-.. ......... ....+. +++|++.|..+
T Consensus 168 k~Vsal~~D--p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~-----E~h~i~-------sl~ys~Tg~~i---- 229 (641)
T KOG0772|consen 168 KIVSALAVD--PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC-----ETHQIN-------SLQYSVTGDQI---- 229 (641)
T ss_pred eEEEEeeec--CCCceeeeccccceEEEEecccccccchhhhccCcc-----cccccc-------eeeecCCCCeE----
Confidence 679999998 5588999999999999999975321 111111110 011222 78999999886
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEe--------eecccccceeeEEeCCCC-CEEEEe-CCCeEEEEE
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI--------YAHAHDYHINSISNNSDG-ETFISA-DDLRINLWN 260 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd 260 (461)
++.+.....+++| .+.....++.+- ...||...++|.+|+|.. +.|+++ .||++++||
T Consensus 230 --------Lvvsg~aqakl~D----RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 230 --------LVVSGSAQAKLLD----RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred --------EEEecCcceeEEc----cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 7777777888887 333333332221 127999999999999983 455666 899999999
Q ss_pred ccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
+...+...+++..+ ...+..-.++.++|+|++ .+||+|+.||.|.+||..+.... .....-..|...
T Consensus 298 v~~~k~q~qVik~k--~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g--------- 364 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTK--PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPG--------- 364 (641)
T ss_pred cCCchhheeEEeec--cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc-cceEeeeccCCC---------
Confidence 99877666665443 455677889999999999 89999999999999998654321 112222333311
Q ss_pred ccceeEEEEccCCCEEEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC-
Q 012535 341 IASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY- 418 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~- 418 (461)
..|++|.||+||++|++ |.|+++++||++...+++....+-...- +.+.++|||+.++|++|+.
T Consensus 365 -~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 365 -QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred -CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccC-------------CCCccccCCCceEEEecccc
Confidence 37999999999999999 5689999999998788887776644321 1248999999999999863
Q ss_pred -----CCeEEEEecCCCCcc
Q 012535 419 -----SNLFRVFGCSEGSAE 433 (461)
Q Consensus 419 -----dg~i~iw~~~~~~~~ 433 (461)
.|.+.+||..+-+..
T Consensus 431 ~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 431 PNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred cCCCCCceEEEEeccceeeE
Confidence 578999998876554
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.5e-27 Score=199.20 Aligned_cols=284 Identities=16% Similarity=0.264 Sum_probs=218.6
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
....++++...|....+++|+.|..+.++|...++ .+..|.||. .
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------k 262 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------K 262 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------e
Confidence 44678899999887899999999999999987765 567899999 7
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.|+.+.|+| +...+++++.|..|++|.............+ .+.|. .+..+|.|.++
T Consensus 263 ki~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~~~~~~h--------~~~V~-------~ls~h~tgeYl------- 318 (506)
T KOG0289|consen 263 KITSVKFHK--DLDTVITASADEIIRVWSVPLSSEPTSSRPH--------EEPVT-------GLSLHPTGEYL------- 318 (506)
T ss_pred EEEEEEecc--chhheeecCCcceEEeeccccccCccccccc--------cccce-------eeeeccCCcEE-------
Confidence 899999995 4568999999999999998766544444433 23344 56777888874
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeee-cccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++++.|+...+.| +..... ..... ....-.+++.+|+|||.+|.+| .|+.|++||+..+....
T Consensus 319 -----lsAs~d~~w~Fsd-~~~g~~------lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--- 383 (506)
T KOG0289|consen 319 -----LSASNDGTWAFSD-ISSGSQ------LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--- 383 (506)
T ss_pred -----EEecCCceEEEEE-ccCCcE------EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---
Confidence 9999999999988 433221 11111 1233568999999999999999 89999999999666442
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+.+|.++|..++|+.+| .+|++++.|+.|++||+|..+. ..++..... ..+.++.|.+
T Consensus 384 -----~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n----~kt~~l~~~-----------~~v~s~~fD~ 442 (506)
T KOG0289|consen 384 -----KFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKN----FKTIQLDEK-----------KEVNSLSFDQ 442 (506)
T ss_pred -----cCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcc----cceeecccc-----------ccceeEEEcC
Confidence 688999999999999999 9999999999999999998764 344443321 3599999999
Q ss_pred CCCEEEEec-CCeEEEEEccC-CCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 352 NGRHILSRD-YMTLKLWDINM-DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
.|+||+.++ +=.|++++-.+ .-..+..+..|.+.. ..+.|....++++++|.|..++++.+
T Consensus 443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCCeEEeecceeEEEEEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence 999999874 44444444322 124455555566443 38889999999999999999998864
No 69
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.1e-27 Score=190.51 Aligned_cols=332 Identities=14% Similarity=0.164 Sum_probs=206.7
Q ss_pred ceeeeccc-c-ccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccc
Q 012535 15 LEWKFSQV-F-GERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (461)
Q Consensus 15 ~~w~~~~~-~-~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
..|+-+|. | .+.......+|.+.|++|+|+.||++|||++.|++|+||++.+-... +.++
T Consensus 64 ~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~------------------eHr~ 125 (420)
T KOG2096|consen 64 DQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK------------------EHRC 125 (420)
T ss_pred hhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh------------------hhhH
Confidence 34666653 1 11122235679999999999999999999999999999999864321 1111
Q ss_pred cccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeE--EeeeecC--CCccCCCCCcc
Q 012535 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK--VFDWNVH--PEKAAGNGPIF 168 (461)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~--~~~~~~~~~v~ 168 (461)
+.. +++. +.-+.++|.|+- ...+++.....++++|.+...+--. ....+.. .........+.
T Consensus 126 ~R~------------nve~-dhpT~V~FapDc-~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i 191 (420)
T KOG2096|consen 126 IRQ------------NVEY-DHPTRVVFAPDC-KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDII 191 (420)
T ss_pred hhc------------cccC-CCceEEEECCCc-ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceE
Confidence 111 1111 235889999532 2344445567789999875332100 0000000 00000011111
Q ss_pred ccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEE
Q 012535 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (461)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 248 (461)
.+-...+++ ++++++.|..|.+|+ +.. +.+... ......-...+.+|+|+++
T Consensus 192 -------~iGiA~~~k------------~imsas~dt~i~lw~-lkG-------q~L~~i-dtnq~~n~~aavSP~GRFi 243 (420)
T KOG2096|consen 192 -------NIGIAGNAK------------YIMSASLDTKICLWD-LKG-------QLLQSI-DTNQSSNYDAAVSPDGRFI 243 (420)
T ss_pred -------EEeecCCce------------EEEEecCCCcEEEEe-cCC-------ceeeee-ccccccccceeeCCCCcEE
Confidence 222233334 459999999999999 432 222221 3334455677899999999
Q ss_pred EEe-CCCeEEEEEccCCCC-ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 249 ISA-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 249 ~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
+++ -.-.|++|.+--.+. .++-+ .+...+.+|...|..++|+|+. ..+++.+.||.++|||..-.-...+..+.++
T Consensus 244 a~~gFTpDVkVwE~~f~kdG~fqev-~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPIFTKDGTFQEV-KRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EEecCCCCceEEEEEeccCcchhhh-hhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 998 677899998642211 11000 1113688999999999999998 8999999999999999864322111122222
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEe-eccCccccccccccCCCccceeeEE
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
.... .+..-.+.-..+.++|+|+.||.+....+++|..+. ++....++ .|...+ .+++
T Consensus 322 ~g~~-----pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~-g~~~~~~e~~h~~~I---------------s~is 380 (420)
T KOG2096|consen 322 EGSA-----PLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED-GKDYPELEDIHSTTI---------------SSIS 380 (420)
T ss_pred cCCc-----chhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc-CccchhHHHhhcCce---------------eeEE
Confidence 1110 011111334489999999999998777899999986 66655553 455543 4999
Q ss_pred EecCCCEEEEecCCCeEEEEecCCC
Q 012535 406 LSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
|+++|+++++++ |..++++.-..|
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred ecCCCcEEeeec-ceeeeeecCCCc
Confidence 999999999988 578888875444
No 70
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=212.23 Aligned_cols=303 Identities=15% Similarity=0.157 Sum_probs=216.8
Q ss_pred eEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEE
Q 012535 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (461)
..++.|++....|.+...|..++|||+.+-...+++. .+-.|. ..|+.
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~--------------------s~lyHS------------~ciW~ 374 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS--------------------SMLYHS------------ACIWD 374 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEecccccccccee--------------------eeeecc------------ceeee
Confidence 3478899999999999999999999998866553322 233444 22443
Q ss_pred EEEeec---------CCCcEEEEEeCCCeEEEEEccCCceeEEeee------------ecCCCcc----------CCCCC
Q 012535 118 IRWCQS---------ANSALYLLSTNDKTIKLWKVQEKKVKKVFDW------------NVHPEKA----------AGNGP 166 (461)
Q Consensus 118 v~~~p~---------~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~------------~~~~~~~----------~~~~~ 166 (461)
+.-.|- -....|++++.|++|++|++..+..-.+... .....+. .+...
T Consensus 375 Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s 454 (1080)
T KOG1408|consen 375 VENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVS 454 (1080)
T ss_pred eccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchh
Confidence 333320 0123699999999999999986321111000 0000000 00001
Q ss_pred ccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--
Q 012535 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-- 244 (461)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 244 (461)
....-+..-+++.+|+|+.+ ++|..-|++++|+ +...+... +..+|...|.|+.|+..
T Consensus 455 ~~d~r~G~R~~~vSp~gqhL------------AsGDr~GnlrVy~-Lq~l~~~~-------~~eAHesEilcLeyS~p~~ 514 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHL------------ASGDRGGNLRVYD-LQELEYTC-------FMEAHESEILCLEYSFPVL 514 (1080)
T ss_pred hcCcccceEEEEECCCccee------------cccCccCceEEEE-ehhhhhhh-------heecccceeEEEeecCchh
Confidence 11111112278888999885 9999999999999 65544322 24899999999999854
Q ss_pred -CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCc---------------------------------------
Q 012535 245 -GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE--------------------------------------- 283 (461)
Q Consensus 245 -~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 283 (461)
.++|+++ .|.-|.+||+...-.+.+ ++.+|..
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~q-------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLVQ-------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchhh-------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence 5678888 799999999975432222 2223333
Q ss_pred ----------ceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 284 ----------VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 284 ----------~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
.+..++..|.. +++++++.|+.|+|||+.+++. .+.|++.. +|.+....+...|.|
T Consensus 588 ~r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq----~k~FKgs~---------~~eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 588 PRHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQ----VKSFKGSR---------DHEGDLIKVILDPSG 653 (1080)
T ss_pred cccccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccce----eeeecccc---------cCCCceEEEEECCCc
Confidence 34566666665 6999999999999999999987 67776643 345778889999999
Q ss_pred CEEEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 354 RHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 354 ~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
-||++ ++|+++.++|+.+ ++++..+.+|...+ +.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 654 iY~atScsdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 654 IYLATSCSDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cEEEEeecCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceEEEEECch
Confidence 99998 5789999999996 99999999999987 5999999999999999999999999975
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-26 Score=188.85 Aligned_cols=255 Identities=18% Similarity=0.307 Sum_probs=196.2
Q ss_pred ccCCceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccc
Q 012535 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (461)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
-+....|.|.+.|. .-.|.++|++++.+ +.|+|+|+.|-+|+|||.......
T Consensus 25 ~~~s~~~~l~~lF~------~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql-------------------- 76 (362)
T KOG0294|consen 25 CTDSVKPTLKPLFA------FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL-------------------- 76 (362)
T ss_pred cccccceeeecccc------ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh--------------------
Confidence 34567788888765 55799999999987 899999999999999999876643
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
..+-.|. +.|+++.|.+......|++|+.||.|.+|+...-++..
T Consensus 77 ---g~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~-------------------- 121 (362)
T KOG0294|consen 77 ---GILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK-------------------- 121 (362)
T ss_pred ---cceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee--------------------
Confidence 4566777 88999999964434489999999999999975432111
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
. +.+|.+.|+.++.+|.+++-++
T Consensus 122 --------------------------------------------------------s-lK~H~~~Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 122 --------------------------------------------------------S-LKAHKGQVTDLSIHPSGKLALS 144 (362)
T ss_pred --------------------------------------------------------e-ecccccccceeEecCCCceEEE
Confidence 1 2688888999999999998777
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
. .|+.+++||+-+++..+.. . .....+.+.|+|.| .+++.++.++ |-+|.+.+... ...+..+
T Consensus 145 Vg~D~~lr~WNLV~Gr~a~v~------~---L~~~at~v~w~~~G-d~F~v~~~~~-i~i~q~d~A~v----~~~i~~~- 208 (362)
T KOG0294|consen 145 VGGDQVLRTWNLVRGRVAFVL------N---LKNKATLVSWSPQG-DHFVVSGRNK-IDIYQLDNASV----FREIENP- 208 (362)
T ss_pred EcCCceeeeehhhcCccceee------c---cCCcceeeEEcCCC-CEEEEEeccE-EEEEecccHhH----hhhhhcc-
Confidence 6 8999999999877766532 1 23334559999999 7777777665 88999888664 2333322
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEE--E
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC--L 406 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~ 406 (461)
..+.++.|. ++.+|++|. ++.|.+||.+. ..++..+.+|..-+. ++. -
T Consensus 209 ------------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~ 259 (362)
T KOG0294|consen 209 ------------KRILCATFL-DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYT 259 (362)
T ss_pred ------------ccceeeeec-CCceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEe
Confidence 346777776 455666654 59999999985 899999999997663 444 3
Q ss_pred ecCCCEEEEecCCCeEEEEecCCC
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
.|++.+|+++|+||.|+|||++..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 567889999999999999999876
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-27 Score=202.22 Aligned_cols=285 Identities=11% Similarity=0.168 Sum_probs=212.6
Q ss_pred ccccceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
...+.|++++|||... -+|+.+ .-.+.||+..+... .+.+.-..
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~-----------------------~k~~srFk----------- 68 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSV-----------------------RKTFSRFK----------- 68 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhh-----------------------hhhHHhhc-----------
Confidence 3447899999999544 344444 34799999877542 22333333
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|.++.|. .||.++++|...|.|+++|+++..+.+....+.. ++. .+.|+|.+..+
T Consensus 69 -~~v~s~~fR--~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a--------pv~-------~~~f~~~d~t~----- 125 (487)
T KOG0310|consen 69 -DVVYSVDFR--SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA--------PVH-------VTKFSPQDNTM----- 125 (487)
T ss_pred -cceeEEEee--cCCeEEEccCCcCcEEEeccccHHHHHHHhhccC--------cee-------EEEecccCCeE-----
Confidence 669999998 8899999999999999999776544444443322 122 55788887765
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCcee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+++|+.|+.+++|| +.... . ...+.+|++.|+|.+|+|... ++++| .||.|++||++.......
T Consensus 126 ------l~s~sDd~v~k~~d-~s~a~------v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 126 ------LVSGSDDKVVKYWD-LSTAY------V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred ------EEecCCCceEEEEE-cCCcE------E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 68999999999999 43322 2 334589999999999999754 77788 799999999997643221
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
--.|..+|..+.+-|.| .++++++. ..|++||+.++... +..+..| ...|+|+++
T Consensus 192 --------elnhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~ql---l~~~~~H------------~KtVTcL~l 246 (487)
T KOG0310|consen 192 --------ELNHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQL---LTSMFNH------------NKTVTCLRL 246 (487)
T ss_pred --------EecCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCcee---hhhhhcc------------cceEEEEEe
Confidence 12389999999999998 78887764 56999999966532 2333333 378999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
..++..|++|+ |+.+++||+.+ -+.+..+..... |.+++.+|+++.++.|..||.+.+=+..
T Consensus 247 ~s~~~rLlS~sLD~~VKVfd~t~-~Kvv~s~~~~~p----------------vLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 247 ASDSTRLLSGSLDRHVKVFDTTN-YKVVHSWKYPGP----------------VLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ecCCceEeecccccceEEEEccc-eEEEEeeecccc----------------eeeEEecCCCceEEEecccceeeeehhh
Confidence 99999999987 89999999875 677777765443 3599999999999999999999887555
Q ss_pred CCC
Q 012535 429 EGS 431 (461)
Q Consensus 429 ~~~ 431 (461)
.++
T Consensus 310 ~k~ 312 (487)
T KOG0310|consen 310 VKK 312 (487)
T ss_pred ccc
Confidence 443
No 73
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=6.6e-26 Score=211.09 Aligned_cols=239 Identities=18% Similarity=0.284 Sum_probs=167.4
Q ss_pred eecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEE
Q 012535 53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132 (461)
Q Consensus 53 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~ 132 (461)
|+.++.|++|+..... .+..+.+|. ..|.+++|+|. ++.+|++|
T Consensus 50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~-~~~lLASg 93 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPC-FSEILASG 93 (568)
T ss_pred CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCC-CCCEEEEE
Confidence 4556777777765322 445678998 88999999963 35699999
Q ss_pred eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeee
Q 012535 133 TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212 (461)
Q Consensus 133 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~ 212 (461)
+.|++|++||+.++..... .
T Consensus 94 S~DgtIrIWDi~t~~~~~~-~----------------------------------------------------------- 113 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVK-E----------------------------------------------------------- 113 (568)
T ss_pred eCCCeEEEEECCCCCcccc-c-----------------------------------------------------------
Confidence 9999999999875421000 0
Q ss_pred ecccCccccceeeEeeecccccceeeEEeCCCCCEE-EEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEE
Q 012535 213 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290 (461)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 290 (461)
+ ..+... +.+|...|.+++|+|++..+ +++ .|+.|++||++++..... +. +...|.+++|
T Consensus 114 i--------~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~-~~~~V~Slsw 175 (568)
T PTZ00420 114 I--------KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN-MPKKLSSLKW 175 (568)
T ss_pred c--------ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee-cCCcEEEEEE
Confidence 0 000011 26788999999999998765 566 799999999997654432 22 4567999999
Q ss_pred eCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C----CeEE
Q 012535 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y----MTLK 365 (461)
Q Consensus 291 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d----~~i~ 365 (461)
+|+| .+|++++.|+.|+|||++++.. +.++.+|..... ...+....|++++.+|++++ + +.|+
T Consensus 176 spdG-~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~-------s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 176 NIKG-NLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKN-------TKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred CCCC-CEEEEEecCCEEEEEECCCCcE----EEEEecccCCce-------eEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 9999 8999999999999999999875 455555541100 01123344668888888843 4 3799
Q ss_pred EEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE-ecCCCEEEEecCCCeEEEEecCCCC
Q 012535 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 366 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
|||++..++++..+..+..... ....| .+++.++++|+.|+.|++|++..+.
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~--------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAP--------------LIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEECCCCCCceEEEEecCCccc--------------eEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 9999965677766654433210 12233 3458899999999999999998764
No 74
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.2e-26 Score=232.72 Aligned_cols=249 Identities=19% Similarity=0.225 Sum_probs=180.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecC-CCccccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-GGCGERNFG 191 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-g~~~~~~~~ 191 (461)
..|.+++|+ +++.++++|+.|++|+||++........ ..+...........+. +++|++. +..
T Consensus 484 ~~V~~i~fs--~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~v~-------~l~~~~~~~~~------ 547 (793)
T PLN00181 484 NLVCAIGFD--RDGEFFATAGVNKKIKIFECESIIKDGR-DIHYPVVELASRSKLS-------GICWNSYIKSQ------ 547 (793)
T ss_pred CcEEEEEEC--CCCCEEEEEeCCCEEEEEECCccccccc-ccccceEEecccCcee-------eEEeccCCCCE------
Confidence 789999999 5678999999999999999754210000 0000000000011222 6677764 444
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+++++.||.|++|| +.. ......+ .+|...|.+++|+| ++.+|++| .|+.|++||+++......
T Consensus 548 ------las~~~Dg~v~lWd-~~~------~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 548 ------VASSNFEGVVQVWD-VAR------SQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred ------EEEEeCCCeEEEEE-CCC------CeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 49999999999999 432 2233333 78999999999997 68899999 799999999986543322
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+. +...+.++.|++....+|++|+.||.|++||++..... +..+. +|...|.++.|
T Consensus 614 --------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---~~~~~------------~h~~~V~~v~f 669 (793)
T PLN00181 614 --------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---LCTMI------------GHSKTVSYVRF 669 (793)
T ss_pred --------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---ceEec------------CCCCCEEEEEE
Confidence 22 23578999996543389999999999999999875421 23333 34478999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCC-----CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEE
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (461)
. ++.+|++++ |+.|++||+... ..++..+.+|...+ ..++|++++.+|++|+.||.|+
T Consensus 670 ~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEE
Confidence 7 677888865 799999999741 35677888887665 3899999999999999999999
Q ss_pred EEecCCCC
Q 012535 424 VFGCSEGS 431 (461)
Q Consensus 424 iw~~~~~~ 431 (461)
+|+.....
T Consensus 734 iw~~~~~~ 741 (793)
T PLN00181 734 VYHKAFPM 741 (793)
T ss_pred EEECCCCC
Confidence 99987553
No 75
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.8e-28 Score=188.60 Aligned_cols=265 Identities=17% Similarity=0.280 Sum_probs=201.6
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
+..|.+.|..+...-.|+.|||++.|++|+||.+..... .+++.+|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~---------- 56 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS---------- 56 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC----------
Confidence 457999999999999999999999999999999987653 24778999999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
++|..++|....-|.+|++++.||.|.||+-.+++..+......+ .+++. +++|.|.+.-+
T Consensus 57 --GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h------~~SVN-------sV~wapheygl---- 117 (299)
T KOG1332|consen 57 --GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH------SASVN-------SVAWAPHEYGL---- 117 (299)
T ss_pred --CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh------cccce-------eecccccccce----
Confidence 999999998534588999999999999999988865554443332 44455 88888887654
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC---C-----------CEEEEe-CCCe
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---G-----------ETFISA-DDLR 255 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~-----------~~l~~~-~d~~ 255 (461)
.|+.++.||.|.+.+ ...... -....+...|...|++++|.|. | +.|++| .|+.
T Consensus 118 ------~LacasSDG~vsvl~-~~~~g~----w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~ 186 (299)
T KOG1332|consen 118 ------LLACASSDGKVSVLT-YDSSGG----WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL 186 (299)
T ss_pred ------EEEEeeCCCcEEEEE-EcCCCC----ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc
Confidence 358999999999987 433211 1111224789999999999987 4 468998 7999
Q ss_pred EEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCC---CCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH---CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
|+||+.....-... .++.+|.+.|+.++|.|.- ...||+++.||++.||-.+......+ ...++.
T Consensus 187 VkiW~~~~~~w~~e------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk-~tll~~----- 254 (299)
T KOG1332|consen 187 VKIWKFDSDSWKLE------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK-KTLLEE----- 254 (299)
T ss_pred eeeeecCCcchhhh------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc-cccccc-----
Confidence 99999986532222 2588999999999999963 24799999999999998773211111 111111
Q ss_pred ccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccCCCC
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG 374 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~ 374 (461)
....+..+.||..|..|+.+ +|+.|.+|.-..+++
T Consensus 255 -------f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 255 -------FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred -------CCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 22679999999999999985 579999998765343
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.8e-26 Score=185.67 Aligned_cols=284 Identities=16% Similarity=0.224 Sum_probs=202.1
Q ss_pred ccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 33 ~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
...+.|.+++||| ...+++.|+.||+||+|+++..... .-+....|+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---------------------~~ka~~~~~----------- 72 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---------------------VPKAQQSHD----------- 72 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcc---------------------cchhhhccC-----------
Confidence 3568899999999 5567779999999999999874221 113345566
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
++|.+++|+ .+|..+++|+.|+.+++||+.+++...+... .+++. .+.|-+...+
T Consensus 73 -~PvL~v~Ws--ddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H---------d~pvk-------t~~wv~~~~~------ 127 (347)
T KOG0647|consen 73 -GPVLDVCWS--DDGSKVFSGGCDKQAKLWDLASGQVSQVAAH---------DAPVK-------TCHWVPGMNY------ 127 (347)
T ss_pred -CCeEEEEEc--cCCceEEeeccCCceEEEEccCCCeeeeeec---------cccee-------EEEEecCCCc------
Confidence 889999999 7899999999999999999999976554332 23344 4455444331
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
..|++|+.|++|++|| .+....... ..-...+.++ +-...+++.+ .+..|.+|+++++...++.
T Consensus 128 ----~cl~TGSWDKTlKfWD-~R~~~pv~t--------~~LPeRvYa~--Dv~~pm~vVata~r~i~vynL~n~~te~k~ 192 (347)
T KOG0647|consen 128 ----QCLVTGSWDKTLKFWD-TRSSNPVAT--------LQLPERVYAA--DVLYPMAVVATAERHIAVYNLENPPTEFKR 192 (347)
T ss_pred ----ceeEecccccceeecc-cCCCCeeee--------eeccceeeeh--hccCceeEEEecCCcEEEEEcCCCcchhhh
Confidence 2359999999999999 432211111 0111233333 2234567777 8999999999866555432
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
. .....-.++||+..++. ...|.|+-.|.+.|-.+..+... .-.+|+.|...... .+...+|++++|+
T Consensus 193 ~------~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~---~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 193 I------ESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSV---NDDVYAVNSIAFH 260 (347)
T ss_pred h------cCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCC---CCceEEecceEee
Confidence 1 22256678999999998 77799999999999998875331 14677777643321 1124679999999
Q ss_pred cCCCEEEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEe
Q 012535 351 RNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (461)
Q Consensus 351 ~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (461)
|.-..|++ |+||+..+||-+. ...++..+.|..++ .+++|+.+|.++|-+
T Consensus 261 P~hgtlvTaGsDGtf~FWDkda-r~kLk~s~~~~qpI---------------tcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDA-RTKLKTSETHPQPI---------------TCCSFNRNGSIFAYA 311 (347)
T ss_pred cccceEEEecCCceEEEecchh-hhhhhccCcCCCcc---------------ceeEecCCCCEEEEE
Confidence 97667776 7799999999885 67777777777665 499999999988754
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.7e-27 Score=220.47 Aligned_cols=306 Identities=16% Similarity=0.207 Sum_probs=213.0
Q ss_pred cccceEEEEEcCCCCEEEEee--cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
+...|.+++.+|||..+|||+ .||.++||+.+.-.. +.+.... . --+.+.....|.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~--~---l~k~l~~m~~h~----------- 69 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNE--N---LPKHLCTMDDHD----------- 69 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhc--c---cchhheeecccc-----------
Confidence 455799999999999999999 999999999653110 0000000 0 012344556676
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC----------------ceeEEeeeecCCCccCCCCCccccccccC
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK----------------KVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (461)
+.|+|++|+ +||.+||+|+.|+.|.||..... ..+....... +.+.|.
T Consensus 70 -~sv~CVR~S--~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~------H~~DV~------- 133 (942)
T KOG0973|consen 70 -GSVNCVRFS--PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG------HDSDVL------- 133 (942)
T ss_pred -CceeEEEEC--CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec------CCCccc-------
Confidence 889999999 77999999999999999998731 0111111111 133344
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
.++|+|++.++ ++++.|+.|.+|+ . ......+.+ .+|.+.|..+.|+|-|++||+- +|+
T Consensus 134 Dv~Wsp~~~~l------------vS~s~DnsViiwn-~------~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 134 DVNWSPDDSLL------------VSVSLDNSVIIWN-A------KTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred eeccCCCccEE------------EEecccceEEEEc-c------ccceeeeee-ecccccccceEECCccCeeeeecCCc
Confidence 78999999985 9999999999999 3 223444444 8999999999999999999998 899
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec----CCeEEEEECCCcccccccccccccccC
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
+|++|++........+. +|-.-......+..+.|+||| .+|++.-. -.++.|.+-.+..
T Consensus 194 tikvwrt~dw~i~k~It--~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk-------------- 256 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSIT--KPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWK-------------- 256 (942)
T ss_pred eEEEEEcccceeeEeec--cchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCce--------------
Confidence 99999976543332221 111111234567899999999 88887643 2245555443322
Q ss_pred CCccccccccccceeEEEEccC------C---------C--EEEEec-CCeEEEEEccCCCCCeeEEeeccCcccccccc
Q 012535 331 PGTRSFFTEIIASISDIKFARN------G---------R--HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~------g---------~--~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (461)
....|-||..++.++.|+|. . . .+|+|+ |++|-||.... .+++..+..-...
T Consensus 257 --~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~------- 326 (942)
T KOG0973|consen 257 --VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK------- 326 (942)
T ss_pred --eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcC-------
Confidence 12345666799999999981 1 1 344566 79999999975 5666544321111
Q ss_pred ccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
.|.+++|+|||..|+.+|.||+|.+..++.++
T Consensus 327 -------SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 327 -------SIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred -------ceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 13599999999999999999999999998653
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.1e-25 Score=172.45 Aligned_cols=309 Identities=19% Similarity=0.311 Sum_probs=209.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
.++.+..|.+++|+|.|.+.|+|+...+++|.....-.. ++..++.. ..|..-..+.-+.|.
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~---~r~~hea~-----~~pp~v~~kr~khhk---------- 89 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID---LRHAHEAA-----KQPPSVLCKRNKHHK---------- 89 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccC---cccccccc-----cCCCeEEeeeccccC----------
Confidence 455678899999999999999999999999987654221 11111111 112111222234454
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEE---eeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV---FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
+.|.|.+|+ ++|.++++|+.|++|++..++...+..+ .+... ..|.+. .++|..+..
T Consensus 90 --gsiyc~~ws--~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm------hdgtir-------dl~fld~~~--- 149 (350)
T KOG0641|consen 90 --GSIYCTAWS--PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM------HDGTIR-------DLAFLDDPE--- 149 (350)
T ss_pred --ccEEEEEec--CccCeEEecCCCceEEEEecccccccccCcceeeee------cCCcee-------eeEEecCCC---
Confidence 889999999 5688999999999999988765433221 11111 134444 455543221
Q ss_pred ccccCCCCCcccc--ccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCC
Q 012535 188 RNFGCASNDSSFP--PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 188 ~~~~~~~~~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~ 264 (461)
+..-++. |..|-.|.+-| .. ..+....+ .+|++.|.++ ++-++-++++| .|.+|++||++-.
T Consensus 150 ------s~~~il~s~gagdc~iy~td-c~------~g~~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 150 ------SGGAILASAGAGDCKIYITD-CG------RGQGFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred ------cCceEEEecCCCcceEEEee-cC------CCCcceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc
Confidence 1111233 33444555444 11 12223333 7999999876 56678899999 7999999999843
Q ss_pred CCceeeeccCCCCCCC---CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 265 NQSFNIVDVKPANMED---LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~---~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
.+++.++- .+.+ ....|.+++..|.| ++|++|-.|....+||++.++. +..+..| .
T Consensus 215 -~~v~~l~~---~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~----iq~f~ph------------s 273 (350)
T KOG0641|consen 215 -SCVNTLDN---DFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM----IQRFHPH------------S 273 (350)
T ss_pred -ceeeeccC---cccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce----eeeeCCC------------c
Confidence 34443321 1222 24679999999999 9999999999999999999987 4555444 4
Q ss_pred cceeEEEEccCCCEEEEec-CCeEEEEEccCC---CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec
Q 012535 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (461)
..|.++.|+|...||++++ |..|++-|++-+ .-++.....|...+ ..+.|+|..--+++.+
T Consensus 274 adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 274 ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSS 338 (350)
T ss_pred cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce---------------EEEEecCccceeeecc
Confidence 8899999999999999998 599999999631 11233344555543 4899999999999999
Q ss_pred CCCeEEEEecC
Q 012535 418 YSNLFRVFGCS 428 (461)
Q Consensus 418 ~dg~i~iw~~~ 428 (461)
.|.++.+|-+.
T Consensus 339 adkt~tlwa~~ 349 (350)
T KOG0641|consen 339 ADKTATLWALN 349 (350)
T ss_pred CcceEEEeccC
Confidence 99999999764
No 79
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1e-25 Score=208.95 Aligned_cols=221 Identities=14% Similarity=0.160 Sum_probs=163.3
Q ss_pred ccccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+|.+.|++++|+| ++++||+|+.||+|+|||+.++.... .....+..+.+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~----------------~~~~~l~~L~gH~--------- 125 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ----------------NISDPIVHLQGHT--------- 125 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc----------------ccCcceEEecCCC---------
Confidence 457999999999999 88999999999999999997653210 0112345678898
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+|.. +.+|++++.|++|+|||+.+++....
T Consensus 126 ---~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~-------------------------------------- 163 (493)
T PTZ00421 126 ---KKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEV-------------------------------------- 163 (493)
T ss_pred ---CcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEE--------------------------------------
Confidence 789999999742 45899999999999999986642211
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+.+|...|.+++|+|++.+|+++ .|+.|++||+++++...
T Consensus 164 ---------------------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 164 ---------------------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ---------------------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 24677889999999999999999 89999999999765433
Q ss_pred eeeccCCCCCCCCCcc-eEEEEEeCCCCCeEEEEe----cCCeEEEEECCCcccccccccccccccCCCccccccccccc
Q 012535 269 NIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSS----SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (461)
.+.+|... +..+.|.+++ ..+++++ .|+.|++||+++.... +.....+. ...
T Consensus 205 --------tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~d~-----------~~~ 261 (493)
T PTZ00421 205 --------SVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDLDQ-----------SSA 261 (493)
T ss_pred --------EEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEeccCC-----------CCc
Confidence 34456543 4567899987 5665543 4799999999875421 22221111 134
Q ss_pred eeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEee
Q 012535 344 ISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQV 381 (461)
Q Consensus 344 v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~ 381 (461)
+....|++++.+|++++ |+.|++||+.. ++++.....
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-~~~~~~~~~ 300 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNIRCFELMN-ERLTFCSSY 300 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-CceEEEeec
Confidence 66678999999988754 79999999986 666655443
No 80
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2.1e-26 Score=191.10 Aligned_cols=261 Identities=17% Similarity=0.276 Sum_probs=191.0
Q ss_pred ceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccc
Q 012535 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (461)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (461)
-.|+.++ ++ ...+..+|++.|+|+.||.||.+||||+-+|.|+||+..++... .
T Consensus 89 flW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~-----------------------~ 142 (399)
T KOG0296|consen 89 FLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ-----------------------W 142 (399)
T ss_pred EEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-----------------------E
Confidence 3488876 33 45567789999999999999999999999999999999987632 1
Q ss_pred cccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccccccc
Q 012535 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (461)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (461)
.+...- +.|.-+.|+| .+..|++|+.||.+.+|.+.++...++...+..+ +.
T Consensus 143 ~~~~e~------------~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--------ct------ 194 (399)
T KOG0296|consen 143 KLDQEV------------EDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--------CT------ 194 (399)
T ss_pred Eeeccc------------CceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCCCCC--------cc------
Confidence 221111 4488899996 4779999999999999999987666666655322 22
Q ss_pred CcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccc----------------------------------
Q 012535 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL---------------------------------- 220 (461)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~---------------------------------- 220 (461)
+=.|.|+|+.+ +++..||+|++|+ ........
T Consensus 195 -~G~f~pdGKr~------------~tgy~dgti~~Wn-~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 195 -CGEFIPDGKRI------------LTGYDDGTIIVWN-PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred -cccccCCCceE------------EEEecCceEEEEe-cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence 45789999996 9999999999999 43211100
Q ss_pred ---cceeeEee-------ecccccceeeEEeCC---CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceE
Q 012535 221 ---VAGCRRIY-------AHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (461)
Q Consensus 221 ---~~~~~~~~-------~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (461)
..+..... ...+...+.++.+.| .-.+.|+| -||+|.|||+...... ..-.|...|.
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---------~~c~he~~V~ 331 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---------HICEHEDGVT 331 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh---------eeccCCCceE
Confidence 00000000 012222233333333 33456677 5999999999854432 2345888999
Q ss_pred EEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEE
Q 012535 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK 365 (461)
Q Consensus 287 ~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~ 365 (461)
.+.|-+ . .+|++++.+|.|+.||.|++++ +.++.+|. ..|.+++++|+.+++++++ |++.+
T Consensus 332 ~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l----~~~y~GH~------------~~Il~f~ls~~~~~vvT~s~D~~a~ 393 (399)
T KOG0296|consen 332 KLKWLN-T-DYLLTACANGKVRQWDARTGQL----KFTYTGHQ------------MGILDFALSPQKRLVVTVSDDNTAL 393 (399)
T ss_pred EEEEcC-c-chheeeccCceEEeeeccccce----EEEEecCc------------hheeEEEEcCCCcEEEEecCCCeEE
Confidence 999999 4 6899999999999999999987 56655554 8899999999999999977 59999
Q ss_pred EEEcc
Q 012535 366 LWDIN 370 (461)
Q Consensus 366 vwd~~ 370 (461)
||+..
T Consensus 394 VF~v~ 398 (399)
T KOG0296|consen 394 VFEVP 398 (399)
T ss_pred EEecC
Confidence 99874
No 81
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=8.1e-27 Score=194.44 Aligned_cols=270 Identities=17% Similarity=0.282 Sum_probs=196.9
Q ss_pred cccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceee-cCCCc
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGC 185 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~g~~ 185 (461)
.++.+++.|.+|... +..|++|+.||.+++|+.... .+.....+. +++. +++|. ++..
T Consensus 100 ~~~~hdDWVSsv~~~----~~~IltgsYDg~~riWd~~Gk-~~~~~~Ght--------~~ik-------~v~~v~~n~~- 158 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGA----SKWILTGSYDGTSRIWDLKGK-SIKTIVGHT--------GPIK-------SVAWVIKNSS- 158 (423)
T ss_pred ccccchhhhhhhccc----CceEEEeecCCeeEEEecCCc-eEEEEecCC--------ccee-------eeEEEecCCc-
Confidence 444555788888875 569999999999999997654 455544442 2222 22332 2211
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~ 264 (461)
...+++++.|.++++|. ....+..... ... ..||...|.+++..+++..+++| .|.+|.+|+..+.
T Consensus 159 ---------~~~fvsas~Dqtl~Lw~-~~~~~~~~~~--~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 159 ---------SCLFVSASMDQTLRLWK-WNVGENKVKA--LKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred ---------cceEEEecCCceEEEEE-ecCchhhhhH--HhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 01259999999999998 4333322211 111 15999999999999999999999 7999999993321
Q ss_pred CC-ceeee----------------ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 265 NQ-SFNIV----------------DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 265 ~~-~~~~~----------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
.. ..+-. .....++.+|.++|.++.|++. ..+++++.|.+|+.||+.++.. +.++..
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~----~~~~~~ 299 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGL----KSTLTT 299 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccc----eeeeec
Confidence 10 00000 0001357899999999999994 5899999999999999999886 344444
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCC--CCeeEEeeccCccccccccccCCCccceeeE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (461)
. ..+.++..+|..++|++|+ |..+++||.++.+ ...+.|.+|.+++. ++
T Consensus 300 ~-------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs---------------sv 351 (423)
T KOG0313|consen 300 N-------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS---------------SV 351 (423)
T ss_pred C-------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh---------------he
Confidence 3 4699999999999999976 7999999998632 35678889999884 89
Q ss_pred EEecCCC-EEEEecCCCeEEEEecCCCCccceeeccCCCCC
Q 012535 405 CLSGDGG-RVATGSYSNLFRVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 405 ~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
.|+|... .|++|+.||.+++||+++-+.....+.+|.+.+
T Consensus 352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred ecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence 9999765 688999999999999998875556777776544
No 82
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.5e-27 Score=206.23 Aligned_cols=238 Identities=18% Similarity=0.287 Sum_probs=195.8
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
-.-+|.+..|-...+++++|+.|..|+||+..+++ .+..|..|. +
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-----------------------kV~~FeAH~------------D 98 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-----------------------KVKTFEAHS------------D 98 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEecccce-----------------------eeEEeeccc------------c
Confidence 34688899999988999999999999999999887 457899998 7
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
-|.+++.+|.. .++++++.|-+|++||.+.+-
T Consensus 99 yIR~iavHPt~--P~vLtsSDDm~iKlW~we~~w---------------------------------------------- 130 (794)
T KOG0276|consen 99 YIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEW---------------------------------------------- 130 (794)
T ss_pred ceeeeeecCCC--CeEEecCCccEEEEeeccCce----------------------------------------------
Confidence 89999999764 499999999999999987542
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
.|.+++ .||..-|.+++|+|. .+.|+++ -|++|++|.+.+....+
T Consensus 131 -----------------------------a~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf--- 177 (794)
T KOG0276|consen 131 -----------------------------ACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF--- 177 (794)
T ss_pred -----------------------------eeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce---
Confidence 122233 799999999999996 6789998 69999999998665554
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCC-CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
++++|...|+|+.|-+.|. .+|++|+.|.+|+|||..+..+ +.++++|. ..|..+.|+
T Consensus 178 -----Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C----V~TLeGHt------------~Nvs~v~fh 236 (794)
T KOG0276|consen 178 -----TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC----VQTLEGHT------------NNVSFVFFH 236 (794)
T ss_pred -----eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH----HHHhhccc------------ccceEEEec
Confidence 6889999999999988542 4899999999999999999876 77877776 789999999
Q ss_pred cCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 351 ~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
|.-..+++|+ ||+++||+..+ -++..++...-. ++|+++-.+.++.++.|.+.|.|.+
T Consensus 237 p~lpiiisgsEDGTvriWhs~T-y~lE~tLn~gle---------------RvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKT-YKLEKTLNYGLE---------------RVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCCcEEEEecCCccEEEecCcc-eehhhhhhcCCc---------------eEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999988 69999999886 454444433222 2478888888888888887776644
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=195.72 Aligned_cols=310 Identities=11% Similarity=0.118 Sum_probs=218.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCccccccccc-ccccCCccccccccc-cCCCcchhhccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMD-YSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 108 (461)
...|.-+|+||+++|++++.++++.+|+|.=|++.+++...-. .+... ... .+.....- .+|.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i---~~~~ev~k~----~~~~~k~~r~~h~-------- 202 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYI---IERDEVLKS----HGNPLKESRKGHV-------- 202 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccc---cccchhhhh----ccCCCCccccccc--------
Confidence 4569999999999999999999999999999999888743111 11100 000 00011111 2555
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|.+++.+ +||.+|++|+.|..|.||+.++.+....+..+ .+.|. +++|-.....
T Consensus 203 ----keil~~avS--~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~gh--------r~~V~-------~L~fr~gt~~--- 258 (479)
T KOG0299|consen 203 ----KEILTLAVS--SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGH--------RGAVS-------SLAFRKGTSE--- 258 (479)
T ss_pred ----ceeEEEEEc--CCCcEEEecCCCceEEEecCcccchhhccccc--------cccee-------eeeeecCccc---
Confidence 669999999 78999999999999999999998877776655 44455 6777666555
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
+++++.|..+++|+ +........ +.+|...|.+|....-++.+.+| .|+++++|++....+.
T Consensus 259 ---------lys~s~Drsvkvw~-~~~~s~vet-------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql 321 (479)
T KOG0299|consen 259 ---------LYSASADRSVKVWS-IDQLSYVET-------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL 321 (479)
T ss_pred ---------eeeeecCCceEEEe-hhHhHHHHH-------HhCCccceeeechhcccceEEeccccceeEEEecccccee
Confidence 49999999999999 543332221 37999999999888788888788 7999999999643333
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
.+.++.+.+-|++|-.+ ..|++|+.||.|.+|++...+. +.+........+..-..++..+|+++
T Consensus 322 ---------ifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkp----lf~~~~AHgv~~~~~~~~~~~Witsl 386 (479)
T KOG0299|consen 322 ---------IFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKP----LFTSRLAHGVIPELDPVNGNFWITSL 386 (479)
T ss_pred ---------eeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCc----eeEeeccccccCCccccccccceeee
Confidence 25668889999999987 4899999999999999988765 33332211111110111222589999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCeeEEee--ccCccccccccccCCCccceeeEEEecCCCEEEEe-cCCCeEE
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV--HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFR 423 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~ 423 (461)
+..|...++++|+ +|.|++|-+......+..+.. -.+. |.+++|+++|+++++| +..-.+-
T Consensus 387 a~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~Gf---------------VNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 387 AVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGF---------------VNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred EecccCceEEecCCCCceEEEEecCCccccceeeecccccE---------------EEEEEEccCCCEEEEecccccccc
Confidence 9999999999988 599999999863233333322 2222 2489999999966655 4444444
Q ss_pred EEe
Q 012535 424 VFG 426 (461)
Q Consensus 424 iw~ 426 (461)
=|-
T Consensus 452 RW~ 454 (479)
T KOG0299|consen 452 RWW 454 (479)
T ss_pred eee
Confidence 443
No 84
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.7e-26 Score=199.22 Aligned_cols=288 Identities=15% Similarity=0.258 Sum_probs=218.4
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+.|.+-|.++.+|...++++||+. |-|+|||+...... ..+..+..-+.
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k--------------------~PvsqLdcl~r-------- 464 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK--------------------SPVSQLDCLNR-------- 464 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC--------------------CccccccccCc--------
Confidence 35679999999999999999999985 57999998754211 11222222221
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..-|.++..+ +||+.|++|+.-.++.|||+.........+... ....+..++.+||.+..
T Consensus 465 --dnyiRSckL~--pdgrtLivGGeastlsiWDLAapTprikaelts-------------sapaCyALa~spDakvc--- 524 (705)
T KOG0639|consen 465 --DNYIRSCKLL--PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-------------SAPACYALAISPDAKVC--- 524 (705)
T ss_pred --ccceeeeEec--CCCceEEeccccceeeeeeccCCCcchhhhcCC-------------cchhhhhhhcCCcccee---
Confidence 1458888888 678999999999999999997653222222111 11112267889999885
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+++..||.|.||| +.+. ...+.+ .+|.+.+.||.++++|..|.+| -|++|+.||++.+.+..
T Consensus 525 ---------FsccsdGnI~vwD-Lhnq------~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 525 ---------FSCCSDGNIAVWD-LHNQ------TLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred ---------eeeccCCcEEEEE-cccc------eeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence 9999999999999 5442 233443 9999999999999999999999 79999999999776553
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
+ ......|.++.++|++ .+|+.|-.++.+.+-.....+ .+.+..|+ +-|.++.
T Consensus 588 q---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~-----kyqlhlhe------------ScVLSlK 640 (705)
T KOG0639|consen 588 Q---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE-----KYQLHLHE------------SCVLSLK 640 (705)
T ss_pred h---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCcc-----ceeecccc------------cEEEEEE
Confidence 2 2246789999999999 999999999999888876654 23444443 7899999
Q ss_pred EccCCCEEEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 349 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 349 ~s~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
|.+.|+++++ |-|+-+..|.... +..+...+... .|+++.+|.|.+++++|+.|....||.+
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~S----------------sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESS----------------SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecccCceeeecCchhhhhhccCcc-ccceeeccccC----------------cceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999998 4589999999885 55554443322 2469999999999999999998888875
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=197.62 Aligned_cols=243 Identities=14% Similarity=0.221 Sum_probs=193.2
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
...+.|+++.|-.||++||.|+..|.|+|||..+.. .+..+.+|+
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-----------------------iLR~~~ah~------------ 110 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-----------------------ILRQLYAHQ------------ 110 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHH-----------------------HHHHHhhcc------------
Confidence 356789999999999999999999999999965432 456788999
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.+|+.+.|+| .++..+++|+.|+.+++||+.+...+.....+.. .|. +.+++|-...+
T Consensus 111 apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--------YVR-------~g~~~~~~~hi------ 168 (487)
T KOG0310|consen 111 APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--------YVR-------CGDISPANDHI------ 168 (487)
T ss_pred CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--------eeE-------eeccccCCCeE------
Confidence 8899999998 5678999999999999999998875333333321 233 55677665543
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeec
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+++|+.||.|++|| ..... .... .-.|..+|..+.+-|.|..++++..+.+++||+.++.+...
T Consensus 169 -----vvtGsYDg~vrl~D-tR~~~-----~~v~--elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~--- 232 (487)
T KOG0310|consen 169 -----VVTGSYDGKVRLWD-TRSLT-----SRVV--ELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT--- 232 (487)
T ss_pred -----EEecCCCceEEEEE-eccCC-----ceeE--EecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh---
Confidence 69999999999999 43322 1111 24788999999999999999999889999999997766543
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
.+..|...|+|+.+..++ ..|++|+-|+.+++||+.+-+. ++.+.-+ ++|.+++.+|+
T Consensus 233 ----~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv----v~s~~~~-------------~pvLsiavs~d 290 (487)
T KOG0310|consen 233 ----SMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV----VHSWKYP-------------GPVLSIAVSPD 290 (487)
T ss_pred ----hhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEE----EEeeecc-------------cceeeEEecCC
Confidence 345599999999999998 8999999999999999877665 4555544 78999999999
Q ss_pred CCEEEEec-CCeEEEEEcc
Q 012535 353 GRHILSRD-YMTLKLWDIN 370 (461)
Q Consensus 353 g~~l~s~~-d~~i~vwd~~ 370 (461)
++.++.|- +|.+.+=+..
T Consensus 291 d~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred CceEEEecccceeeeehhh
Confidence 99999985 5776665443
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=194.20 Aligned_cols=259 Identities=17% Similarity=0.261 Sum_probs=198.9
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce---eEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+.|.-+.|| ++|++||+++.|.+..+|.+..... +.....+. .+|. -+.|+||.+++
T Consensus 225 dEVWfl~FS--~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~--------~~V~-------yi~wSPDdryL--- 284 (519)
T KOG0293|consen 225 DEVWFLQFS--HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS--------QPVS-------YIMWSPDDRYL--- 284 (519)
T ss_pred CcEEEEEEc--CCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc--------CceE-------EEEECCCCCeE---
Confidence 669999999 7799999999999999999864432 33333332 2233 67999999996
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
++|+.+..+.+|| +.. ..+...+..++...+.+.+|.|||..+++| .|+.+..||++. +...
T Consensus 285 ---------laCg~~e~~~lwD-v~t------gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~ 347 (519)
T KOG0293|consen 285 ---------LACGFDEVLSLWD-VDT------GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILG 347 (519)
T ss_pred ---------EecCchHheeecc-CCc------chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhh
Confidence 9999999999999 433 333344445667889999999999999999 799999999983 3221
Q ss_pred eeeccCCCCCCCC-CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 269 NIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 269 ~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
.+++. ...|.+++.++|| +.+++.+.|..|++|+...... ......+ .+|+++
T Consensus 348 --------~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~d----r~lise~-------------~~its~ 401 (519)
T KOG0293|consen 348 --------NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVD----RGLISEE-------------QPITSF 401 (519)
T ss_pred --------cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhh----hcccccc-------------CceeEE
Confidence 23332 3568999999999 8888889999999999876543 1122222 579999
Q ss_pred EEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec-CCCEEEEecCCCeEEEE
Q 012535 348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVF 425 (461)
Q Consensus 348 ~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw 425 (461)
+.|.||+++++. .+..+++||+. +...+..+.||..... +..-+|-. +..++++||+|+.|+||
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIW 467 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIW 467 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEE
Confidence 999999999886 46899999999 5888899999886432 12445543 45899999999999999
Q ss_pred ecCCCCccceeeccCCCCCccccc
Q 012535 426 GCSEGSAESTTLEASKNPMSLFLH 449 (461)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~ 449 (461)
+..+|+.. .++.+|...+..+..
T Consensus 468 hr~sgkll-~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 468 HRISGKLL-AVLSGHSKTVNCVSW 490 (519)
T ss_pred EccCCcee-EeecCCcceeeEEec
Confidence 99999776 789999866554433
No 87
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=9.8e-26 Score=201.86 Aligned_cols=328 Identities=17% Similarity=0.252 Sum_probs=224.1
Q ss_pred cccccccceEEEEEcCCCC---EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccc----------ccccc
Q 012535 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR----------YKTEF 96 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~---~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 96 (461)
+..+|.+.|.+++|..-+. +||+++.|..||||.+.-+......+.+.... .++..|.+. +.+.+
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t--~~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLT--TLSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccc--cccCCceeeeeeeEEEEEehhhhh
Confidence 4568999999999987443 89999999999999986544222111111000 111111111 22345
Q ss_pred cCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCc
Q 012535 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (461)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (461)
.||+ +.|+++.|+| .+..|++++.|+++.+|...+..-+-......-..- ...+..+ +
T Consensus 264 ~GHe------------DWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~-------g 321 (764)
T KOG1063|consen 264 MGHE------------DWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFW-------G 321 (764)
T ss_pred cCcc------------cceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeeccc-cccccee-------e
Confidence 6888 9999999994 467899999999999999876532322222211100 0112223 5
Q ss_pred ceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCe
Q 012535 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 255 (461)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~ 255 (461)
..|+|++..+ ++-+..|..++|. .+.......+ ....||...|.+++|+|.|++|++. .|.+
T Consensus 322 ~lw~~n~~~i------------i~~g~~Gg~hlWk----t~d~~~w~~~-~~iSGH~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 322 GLWSPNSNVI------------IAHGRTGGFHLWK----TKDKTFWTQE-PVISGHVDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred EEEcCCCCEE------------EEecccCcEEEEe----ccCccceeec-cccccccccceeeeecCCCCEEEEeccccc
Confidence 5788888775 8889999999986 2221222222 2348999999999999999999887 6877
Q ss_pred EEEEEccCC----------------------------------CCceeeecc----------------------------
Q 012535 256 INLWNLEIS----------------------------------NQSFNIVDV---------------------------- 273 (461)
Q Consensus 256 i~iwd~~~~----------------------------------~~~~~~~~~---------------------------- 273 (461)
-|++-.-.. +...+.+..
T Consensus 385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred eeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 777533200 000000000
Q ss_pred ----------------------------------------------------CCCCCCCCCcceEEEEEeCCCCCeEEEE
Q 012535 274 ----------------------------------------------------KPANMEDLTEVITSAEFHPTHCNMLAYS 301 (461)
Q Consensus 274 ----------------------------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 301 (461)
....+.||...|.+++.+|++ +++|++
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASa 543 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASA 543 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeeh
Confidence 002356788899999999999 999999
Q ss_pred ecCC-----eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCC
Q 012535 302 SSKG-----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP 375 (461)
Q Consensus 302 ~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~ 375 (461)
+... .|++|+..+... +..+..|. -.|+.++|||||+||++.+ |.++.+|....+...
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~----~~~L~~Hs------------LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQ----VQELEGHS------------LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred hhhCCccceEEEEEeccchhh----hheecccc------------eEEEEEEECCCCcEEEEeecCceEEeeeeecccch
Confidence 8754 589999877654 34455554 7899999999999999977 799999998642222
Q ss_pred ---eeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 376 ---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 376 ---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
....+.|... ||++.|+|++.+++|+|.|..|++|.....
T Consensus 608 e~~fa~~k~HtRI---------------IWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 608 EFRFACLKAHTRI---------------IWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hhhhccccccceE---------------EEEcccCcccceeEEecCCceEEEEeccCc
Confidence 2234555544 379999999999999999999999999877
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=205.20 Aligned_cols=261 Identities=20% Similarity=0.326 Sum_probs=205.8
Q ss_pred cccccceE---EEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcc
Q 012535 32 VQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (461)
Q Consensus 32 ~~h~~~V~---~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (461)
..|...|. ++..+. .++||+||++||.|++|+....... |.-.+...++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH-------
Confidence 35666666 555554 6778999999999999998754321 2233667788898
Q ss_pred ccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
+.|+.++.. .+++.|++++.|-+|++|+...+...
T Consensus 74 -----DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~-------------------------------------- 108 (735)
T KOG0308|consen 74 -----DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTF-------------------------------------- 108 (735)
T ss_pred -----hHHhhHHhh--cCCCceEEecCCceEEEeecccCcch--------------------------------------
Confidence 889999998 77889999999999999997644200
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEe-CCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
|..+ +..|..-|.|++. .++...+|+| -|+.|.+||++++.
T Consensus 109 ------------------------------------c~st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 109 ------------------------------------CMST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred ------------------------------------hHhh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 0011 3678899999999 7778888888 69999999999663
Q ss_pred C-ce-eeeccCCCCCC-CCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 266 Q-SF-NIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 266 ~-~~-~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
. .. ..-.+....+. ++...|++++.++.| ..|++|+..+.|++||.++.+. +..+ .||..
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k----imkL------------rGHTd 214 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK----IMKL------------RGHTD 214 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc----eeee------------ecccc
Confidence 2 11 11111112344 788999999999999 8999999999999999999765 3333 34558
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (461)
.|..+..++||..+++++ ||+|++||+.. .+++.++..|...+ |++.-+|+=..+++|+.||.
T Consensus 215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCc
Confidence 899999999999999965 79999999995 89999999999775 78999999999999999999
Q ss_pred EEEEecCCCC
Q 012535 422 FRVFGCSEGS 431 (461)
Q Consensus 422 i~iw~~~~~~ 431 (461)
|+.=|+.+..
T Consensus 279 i~~Tdl~n~~ 288 (735)
T KOG0308|consen 279 IYRTDLRNPA 288 (735)
T ss_pred EEecccCCch
Confidence 9999999853
No 89
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.8e-25 Score=177.85 Aligned_cols=273 Identities=14% Similarity=0.222 Sum_probs=190.3
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
+..|.+-|+|+.|++.|+.+|+++.|++|+|||..... .++.+....+.|.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------------~~W~~Ts~Wrah~---------- 59 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------------GTWSCTSSWRAHD---------- 59 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------------CceEEeeeEEecC----------
Confidence 45789999999999999999999999999999975443 2566777788998
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
+.|..|.|.+..-|+.+++++.|+++.||.-....... .|+
T Consensus 60 --~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~-------------------------------~~~------ 100 (361)
T KOG2445|consen 60 --GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA-------------------------------HGR------ 100 (361)
T ss_pred --CcEEEEEecCccccceEEEEecCCceeeeeeccccccc-------------------------------ccc------
Confidence 88999999976679999999999999999753111000 010
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCc
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
-|. ++..+......|+++.|.|. |-.|+++ .||.++||+.-.....
T Consensus 101 ------------------~Wv-------------~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 101 ------------------RWV-------------RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred ------------------eeE-------------EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 011 11112455678999999997 7788888 8999999987643222
Q ss_pred eee-----eccCCCCCCCCCcceEEEEEeCCC--CCeEEEEecC-----CeEEEEECCCcccccccccccccccCCCccc
Q 012535 268 FNI-----VDVKPANMEDLTEVITSAEFHPTH--CNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (461)
Q Consensus 268 ~~~-----~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (461)
.+- +..-+.....+.....|+.|+|.. +.+||.|+.+ +.++||...........+.++.
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~--------- 220 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP--------- 220 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC---------
Confidence 110 000001122356677899999742 2578888776 4788887765432222233333
Q ss_pred cccccccceeEEEEccC----CCEEEEec-CCeEEEEEccCCC-------------------CCeeEEeeccCccccccc
Q 012535 336 FFTEIIASISDIKFARN----GRHILSRD-YMTLKLWDINMDS-------------------GPVATFQVHEHLRPKLCD 391 (461)
Q Consensus 336 ~~~~h~~~v~~l~~s~~----g~~l~s~~-d~~i~vwd~~~~~-------------------~~~~~~~~~~~~~~~~~~ 391 (461)
+|..+|+.++|.|+ -..||+++ || |+||.+..-. +.+..+..|.+.
T Consensus 221 ---d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~------ 290 (361)
T KOG2445|consen 221 ---DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE------ 290 (361)
T ss_pred ---CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc------
Confidence 45589999999994 24566676 67 9999997311 112233444444
Q ss_pred cccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
||.+.|+-.|..|++.|.||.|++|...-.
T Consensus 291 ---------VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 291 ---------VWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ---------eEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 489999999999999999999999987643
No 90
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=191.75 Aligned_cols=295 Identities=15% Similarity=0.162 Sum_probs=209.3
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
.+.|++|.|+|.-..|++++.||+++||.++..... .++.+.-.. .+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------fP 259 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------FP 259 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------Cc
Confidence 478999999999999999999999999999865421 222222222 56
Q ss_pred eEEEEEeecCCCc-EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 115 INKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 115 v~~v~~~p~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
|.+.+|.| +|. .+++++....+..||+.+.+..++......+.+ .+. ....++++.++
T Consensus 260 i~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~-----~~e-------~FeVShd~~fi------- 318 (514)
T KOG2055|consen 260 IQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK-----SME-------RFEVSHDSNFI------- 318 (514)
T ss_pred cceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCcccc-----hhh-------eeEecCCCCeE-------
Confidence 99999995 566 899999999999999998887666544332211 111 44667888875
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+..+..|.|.+.. . .+... ... -.-.+.|..++|+.+++.|+++ .+|.|.+||+++........
T Consensus 319 -----a~~G~~G~I~lLh-a---kT~el---i~s--~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~- 383 (514)
T KOG2055|consen 319 -----AIAGNNGHIHLLH-A---KTKEL---ITS--FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV- 383 (514)
T ss_pred -----EEcccCceEEeeh-h---hhhhh---hhe--eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe-
Confidence 9999999999855 2 11111 111 1224788999999999888877 89999999999664333321
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
....-.-++++.++++ .+||+|+..|.|.|||..+.... ..|.+...+......|+++.|++|
T Consensus 384 ------D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s----------~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 384 ------DDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS----------TNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred ------ecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc----------CCCCchhhhhhhheeeeeeeeCcc
Confidence 1112233578888998 89999999999999997653210 111112222223368999999999
Q ss_pred CCEEEEec---CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 353 GRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 353 g~~l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
++.||.++ .+.+++-.+.+ ......+.... ..+..|++++|+|.+.+||.|..+|.+.+|.+.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS-~TVFsNfP~~n------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPS-CTVFSNFPTSN------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhhccccceEEEeccc-eeeeccCCCCC------------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999876 38999988875 33333333222 233445799999999999999999999999874
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.8e-25 Score=200.22 Aligned_cols=277 Identities=15% Similarity=0.214 Sum_probs=210.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|...|..+++.+.. .++++++||++++|+-..++.+ -...+.+|.
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~---------- 57 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK---------- 57 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc----------
Confidence 45799999999987655 8999999999999997665532 223456665
Q ss_pred cccceEE-EEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 111 IEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 111 ~~~~v~~-v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+-|.. +++.+ .++.++++|+.|.+|.+|...+.....++..|.. .|. +++...++.
T Consensus 58 --g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s--------nVC-------~ls~~~~~~----- 114 (745)
T KOG0301|consen 58 --GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS--------NVC-------SLSIGEDGT----- 114 (745)
T ss_pred --ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhhhcccc--------cee-------eeecCCcCc-----
Confidence 54665 88876 5566899999999999999998887777776632 233 333333333
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+++|+.|.++++|. +... ... +.+|+..|..++.-|.+ .+++| .|.+|++|.-. ...
T Consensus 115 --------~iSgSWD~TakvW~-~~~l--------~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l 172 (745)
T KOG0301|consen 115 --------LISGSWDSTAKVWR-IGEL--------VYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLL 172 (745)
T ss_pred --------eEecccccceEEec-chhh--------hcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chh
Confidence 49999999999997 3221 111 48999999999999988 77777 89999999853 222
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
.++.+|.+.|+.+++-+++ .|++++.||.|++|++.... +..+.+|. +-|.++.
T Consensus 173 -------~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge~-----l~~~~ght------------n~vYsis 226 (745)
T KOG0301|consen 173 -------KTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGEV-----LLEMHGHT------------NFVYSIS 226 (745)
T ss_pred -------hhhccchhheeeeEEecCC--CeEeecCCceEEEEeccCce-----eeeeeccc------------eEEEEEE
Confidence 2688899999999999985 69999999999999995443 45555554 8899999
Q ss_pred EccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 349 ~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
...++..++++ .|++++||+.. ++.+.++..... ||++.+-++|. +++|++||.||||..
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPtts---------------iWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTS---------------IWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC---ceEEEEecCccc---------------eEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 77777788875 57999999974 666666644433 36888877776 677888999999998
Q ss_pred CC
Q 012535 428 SE 429 (461)
Q Consensus 428 ~~ 429 (461)
..
T Consensus 288 ~k 289 (745)
T KOG0301|consen 288 DK 289 (745)
T ss_pred cc
Confidence 74
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.8e-25 Score=178.39 Aligned_cols=281 Identities=14% Similarity=0.164 Sum_probs=204.2
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
..+.|++|.|+|.++.|++++.||++++|+.....+. ..-.|. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~------------------------~~~~~~------------~ 55 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK------------------------LKFKHG------------A 55 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh------------------------hheecC------------C
Confidence 4688999999999999999999999999998865421 112233 6
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
++.+++|. +...+++|+.||.|+.+|+.++....+.... ..+. ++.+.+....
T Consensus 56 plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~~~~igth~---------~~i~-------ci~~~~~~~~-------- 108 (323)
T KOG1036|consen 56 PLLDCAFA---DESTIVTGGLDGQVRRYDLNTGNEDQIGTHD---------EGIR-------CIEYSYEVGC-------- 108 (323)
T ss_pred ceeeeecc---CCceEEEeccCceEEEEEecCCcceeeccCC---------CceE-------EEEeeccCCe--------
Confidence 79999996 3568999999999999999988754443322 2233 5666655555
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+++|+.|+.|++|| ..... +... ......|.++.. .++.|+.| .+..+.+||+++....++.
T Consensus 109 ----vIsgsWD~~ik~wD-~R~~~------~~~~--~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-- 171 (323)
T KOG1036|consen 109 ----VISGSWDKTIKFWD-PRNKV------VVGT--FDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-- 171 (323)
T ss_pred ----EEEcccCccEEEEe-ccccc------cccc--cccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh--
Confidence 49999999999999 33210 1111 122235666544 56778887 8999999999987766542
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
.-...+-.++||++-|++ .-+++++-||.|.+=.+..........+.|+.|.... .-.....+|++++|+|-
T Consensus 172 ----reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~---~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 172 ----RESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE---KDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ----ccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeeccc---CCceEEEEeceeEeccc
Confidence 223356788999999977 6788899999998877766544334456777775321 11122368999999998
Q ss_pred CCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 353 g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
-..||+| +||.|.+||+.+ .+.+..+......+ -+++|+.||..||.++.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence 8889996 589999999986 77777776554333 38999999999999874
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-25 Score=198.11 Aligned_cols=238 Identities=14% Similarity=0.218 Sum_probs=186.2
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccC-CCcchhhcccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEE 113 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~ 113 (461)
.+.|+++.|+++|.+||+|..+|.|.|||....+.+ ..+.+ |. .
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-----------------------~~~~~~h~------------~ 261 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-----------------------RTLRGSHA------------S 261 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-----------------------ccccCCcC------------c
Confidence 789999999999999999999999999998876532 34555 77 7
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.|-+++|. +..+.+|+.|+.|..+|++..+.... ..+.+ ...|. .+.|++++..+
T Consensus 262 rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H------~qeVC-------gLkws~d~~~l------- 316 (484)
T KOG0305|consen 262 RVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-TLQGH------RQEVC-------GLKWSPDGNQL------- 316 (484)
T ss_pred eeEEEecc----CceEEEecCCCcEEEEEEecchhhhh-hhhcc------cceee-------eeEECCCCCee-------
Confidence 89999997 55899999999999999987653333 12111 22344 78999999985
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe---CCCeEEEEEccCCCCcee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA---DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~---~d~~i~iwd~~~~~~~~~ 269 (461)
++|+.|+.+.||| . ....+... +..|...|..++|+|- ..+||+| .|+.|++||..++.....
T Consensus 317 -----ASGgnDN~~~Iwd-~------~~~~p~~~-~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 317 -----ASGGNDNVVFIWD-G------LSPEPKFT-FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred -----ccCCCccceEecc-C------CCccccEE-EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 9999999999999 3 11222333 3799999999999997 6678886 499999999996654432
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEE--EecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
..-...|.++.|++.. +-|++ |..+..|.||+..+... +..+.+ |...|..+
T Consensus 384 ---------vdtgsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~----~~~l~g------------H~~RVl~l 437 (484)
T KOG0305|consen 384 ---------VDTGSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKL----VAELLG------------HTSRVLYL 437 (484)
T ss_pred ---------cccCCceeeEEEcCCC-CEEEEecCCCCCcEEEEeccccce----eeeecC------------CcceeEEE
Confidence 2246889999999987 55554 34477899999987543 444444 45889999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccC
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~ 371 (461)
+++|||..+++|+ |.++++|++-.
T Consensus 438 a~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 438 ALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EECCCCCEEEEecccCcEEeccccC
Confidence 9999999999975 79999999974
No 94
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=177.75 Aligned_cols=291 Identities=13% Similarity=0.170 Sum_probs=200.3
Q ss_pred eEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEE
Q 012535 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (461)
-.|+.|++.|.+||+|..||.|.|||..+.. ..+.+.+|. .+|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------RPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------cceeE
Confidence 6899999999999999999999999998765 446788898 88999
Q ss_pred EEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCc
Q 012535 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (461)
Q Consensus 118 v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (461)
++|| .+|+.|++++.|..|.+||+..+.+....... ++|+ ...|+|..+...
T Consensus 71 l~WS--~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---------spv~-------~~q~hp~k~n~~---------- 122 (405)
T KOG1273|consen 71 LCWS--RDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---------SPVW-------GAQWHPRKRNKC---------- 122 (405)
T ss_pred EEec--CCCCEeeeecCCceeEEEeccCCCceeEEEcc---------Cccc-------eeeeccccCCeE----------
Confidence 9999 78999999999999999999998866655543 3344 556776655421
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeeccc-ccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCC
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (461)
+++-.+..-.+-+ +.. ....+...-..+. .....+..|.+.|+++++| +.|.+.++|..+.+....
T Consensus 123 -va~~~~~sp~vi~-~s~----~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas------ 190 (405)
T KOG1273|consen 123 -VATIMEESPVVID-FSD----PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS------ 190 (405)
T ss_pred -EEEEecCCcEEEE-ecC----CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee------
Confidence 1111111111111 110 0000100000111 1112234688999999999 899999999987643321
Q ss_pred CCCCCC-CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc--ccceeEEEEccC
Q 012535 276 ANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI--IASISDIKFARN 352 (461)
Q Consensus 276 ~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~~ 352 (461)
+.-. ...|..+.++..| +.|+.-+.|+.||.|+++.-....+ ...+.+..++..- .-.-.+++|+.+
T Consensus 191 --~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r-------~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 191 --FRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGR-------DGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred --eeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCc-------cCCcChhHHHHHHHhhhhhhheeecCC
Confidence 1111 3678899999998 9999999999999999873211000 0000000011110 123567899999
Q ss_pred CCEEEEecC--CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 353 GRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 353 g~~l~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
|.|+++|+. ..++||.... |.+++.+.|..+..- .++.|+|-...+++- ..|.+++|....
T Consensus 261 geYv~a~s~~aHaLYIWE~~~-GsLVKILhG~kgE~l--------------~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSI-GSLVKILHGTKGEEL--------------LDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccEEEeccccceeEEEEecCC-cceeeeecCCchhhe--------------eecccccceeeeeec-cCCceEEEEeec
Confidence 999999873 8999999986 999999988775431 488999999988887 679999998764
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=173.00 Aligned_cols=251 Identities=15% Similarity=0.234 Sum_probs=189.8
Q ss_pred ccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccc
Q 012535 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (461)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (461)
.++++|. ..|.+|+|+ .+|..+++|+.|+++++|+++..+.........+ .+.+.
T Consensus 14 r~~~~~~------------~~v~Sv~wn--~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh------~~svd----- 68 (313)
T KOG1407|consen 14 RELQGHV------------QKVHSVAWN--CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGH------TDSVD----- 68 (313)
T ss_pred HHhhhhh------------hcceEEEEc--ccCceeeecccCCceEEEEecchhhhhhhcccCC------Ccchh-----
Confidence 4567777 789999999 7899999999999999999987744333222211 12233
Q ss_pred cCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C
Q 012535 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (461)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (461)
.++|+|...-+ +++++.|.+|++|| +... ++.... ...... .-+.|+|+|++++.+ .
T Consensus 69 --ql~w~~~~~d~-----------~atas~dk~ir~wd-~r~~------k~~~~i-~~~~en-i~i~wsp~g~~~~~~~k 126 (313)
T KOG1407|consen 69 --QLCWDPKHPDL-----------FATASGDKTIRIWD-IRSG------KCTARI-ETKGEN-INITWSPDGEYIAVGNK 126 (313)
T ss_pred --hheeCCCCCcc-----------eEEecCCceEEEEE-eccC------cEEEEe-eccCcc-eEEEEcCCCCEEEEecC
Confidence 56777665543 79999999999999 4332 222222 222233 358899999999999 7
Q ss_pred CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
|..|...|.++.+... -....-.+..+.|+-++ .+|......|.|.|......+. +.++..|.
T Consensus 127 dD~it~id~r~~~~~~---------~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkp----v~si~AH~--- 189 (313)
T KOG1407|consen 127 DDRITFIDARTYKIVN---------EEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKP----VQSIKAHP--- 189 (313)
T ss_pred cccEEEEEecccceee---------hhcccceeeeeeecCCC-CEEEEecCCceEEEEecccccc----ccccccCC---
Confidence 9999999998554332 22245567888999776 7777777789999988775443 55666554
Q ss_pred ccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (461)
....++.|+|+|+|+|+|+ |-.+-+||++. --+++.+..+.-++ ..++||.||+
T Consensus 190 ---------snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpV---------------RTlSFS~dg~ 244 (313)
T KOG1407|consen 190 ---------SNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPV---------------RTLSFSHDGR 244 (313)
T ss_pred ---------cceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccCce---------------EEEEeccCcc
Confidence 7899999999999999987 79999999984 77888888888776 4999999999
Q ss_pred EEEEecCCCeEEEEecCCCCcc
Q 012535 412 RVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 412 ~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+||+||+|-.|-|=++++|.+.
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred eeeccCccceEEeEecccCCeE
Confidence 9999999999999999888644
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=167.41 Aligned_cols=291 Identities=16% Similarity=0.159 Sum_probs=204.0
Q ss_pred chhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccC------CceeEEee-eecCCCccCCCCCcccccccc
Q 012535 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE------KKVKKVFD-WNVHPEKAAGNGPIFGSHVSA 174 (461)
Q Consensus 102 ~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~ 174 (461)
.|..+..++-...|.+++|+ ++|.+.++|+..++++|-.... +....... .-.-.......|.++
T Consensus 22 ~f~~i~~l~dsqairav~fh--p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy------ 93 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFH--PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY------ 93 (350)
T ss_pred ceEEEEEecchhheeeEEec--CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE------
Confidence 34455555555789999999 5577999999999999875321 10000000 000012234577788
Q ss_pred CcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC----CCEEEE
Q 012535 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFIS 250 (461)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~ 250 (461)
+.+|+|+|..+ ++|+.|+.|++.- . +.++.......-. +..|.+.|+.++|-.+ +.+|++
T Consensus 94 -c~~ws~~geli------------atgsndk~ik~l~-f-n~dt~~~~g~dle-~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 94 -CTAWSPCGELI------------ATGSNDKTIKVLP-F-NADTCNATGHDLE-FNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred -EEEecCccCeE------------EecCCCceEEEEe-c-ccccccccCccee-eeecCCceeeeEEecCCCcCceEEEe
Confidence 88999999996 9999999999864 2 2222222222223 3789999999999654 667887
Q ss_pred e--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 251 A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 251 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
+ .|..|++-|..++.... .+.+|.+.|.++- +-++ .++++|+.|.+|++||++-... +.++...
T Consensus 158 ~gagdc~iy~tdc~~g~~~~--------a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~----v~~l~~~ 223 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFH--------ALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSC----VNTLDND 223 (350)
T ss_pred cCCCcceEEEeecCCCCcce--------eecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccce----eeeccCc
Confidence 6 58888888887655443 4778999888762 3335 7999999999999999997764 3433321
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
.... .--...|.+++..|.|++|++|- |....+||++ .++.++.+..|...+ .++.|+
T Consensus 224 ~~~~-----glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~f~phsadi---------------r~vrfs 282 (350)
T KOG0641|consen 224 FHDG-----GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQRFHPHSADI---------------RCVRFS 282 (350)
T ss_pred ccCC-----CcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeeeeCCCccce---------------eEEEeC
Confidence 1000 00125799999999999999986 6899999999 489999999888776 499999
Q ss_pred cCCCEEEEecCCCeEEEEecCCC---CccceeeccCCCCCccccccc
Q 012535 408 GDGGRVATGSYSNLFRVFGCSEG---SAESTTLEASKNPMSLFLHFQ 451 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~ 451 (461)
|...+|++++.|..|++=|+... +....++..|.+....-..++
T Consensus 283 p~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 283 PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred CCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 99999999999999999999854 233344555655544444433
No 97
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=180.66 Aligned_cols=287 Identities=13% Similarity=0.182 Sum_probs=200.9
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc----eeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
.++.+.+|+ +||.++++|+.|..|+|.|++.-- .+......... ........+.-....+.+.|+|....+
T Consensus 113 ~~cR~aafs--~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa-~hPvIRTlYDH~devn~l~FHPre~IL-- 187 (430)
T KOG0640|consen 113 SPCRAAAFS--PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQA-RHPVIRTLYDHVDEVNDLDFHPRETIL-- 187 (430)
T ss_pred cceeeeeeC--CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCccc-CCceEeehhhccCcccceeecchhheE--
Confidence 889999999 779999999999999999987311 11111000000 000000011111122378999999885
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
++++.|+.|+++| ...... .+..+.+ ....+|.++.|+|.|.+|+.| +...+++||+++-+.-
T Consensus 188 ----------iS~srD~tvKlFD-fsK~sa---KrA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 188 ----------ISGSRDNTVKLFD-FSKTSA---KRAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred ----------EeccCCCeEEEEe-cccHHH---HHHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 9999999999999 432222 1111222 334689999999999999999 8999999999965433
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
... ..-..|.+.|+++.+++.+ ++.++|+.||.|+|||--+++. +.++...... ..|.+.
T Consensus 252 vsa-----nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH~g----------sevcSa 311 (430)
T KOG0640|consen 252 VSA-----NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAHGG----------SEVCSA 311 (430)
T ss_pred eec-----CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhcCC----------ceeeeE
Confidence 221 2345699999999999999 9999999999999999888776 5666432211 579999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec-CCCeEEEE
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVF 425 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw 425 (461)
.|..+|+|+++++ |..+++|.+.+ ++.+..+.+........ . -+...|+....+++.-. ..+.+.-|
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~---~-------rtqAvFNhtEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQK---H-------RTQAVFNHTEDYVLFPDEASNSLCSW 380 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccchh---h-------hhhhhhcCccceEEccccccCceeec
Confidence 9999999999855 79999999997 89999988764321100 0 02455666666666544 35778999
Q ss_pred ecCCCCccceeeccCCCCCccccccc
Q 012535 426 GCSEGSAESTTLEASKNPMSLFLHFQ 451 (461)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (461)
|.+++......--+|..+++-...++
T Consensus 381 daRtadr~~l~slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 381 DARTADRVALLSLGHNGAVRWIVHSP 406 (430)
T ss_pred cccchhhhhhcccCCCCCceEEEeCC
Confidence 99998877666677877776554443
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=4.2e-26 Score=179.79 Aligned_cols=261 Identities=11% Similarity=0.179 Sum_probs=209.9
Q ss_pred cceEEEEEee-cCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 113 EKINKIRWCQ-SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 113 ~~v~~v~~~p-~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
.+|..++|+| .++|-+|++++.|+.-.+-+-+++..+..+..+ .|.|+ +.....+...
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh--------kgavw-------~~~l~~na~~------ 73 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH--------KGAVW-------SATLNKNATR------ 73 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc--------Cccee-------eeecCchhhh------
Confidence 8899999998 567878888999999999888899988888876 44555 2222223222
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
.++++.|-+-++||.+...+ ... ..|..-|..++|+.|.+.|++| .+..+++||++..+.+.
T Consensus 74 ------aasaaadftakvw~a~tgde-------lhs--f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-- 136 (334)
T KOG0278|consen 74 ------AASAAADFTAKVWDAVTGDE-------LHS--FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-- 136 (334)
T ss_pred ------hhhhcccchhhhhhhhhhhh-------hhh--hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc--
Confidence 37888999999999332222 122 3677889999999999999999 79999999998766443
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
..+.+|.+.|..+.|.... +.++++..|++||+||.+++.. +.++.-. .+|+++.++
T Consensus 137 -----~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~----v~sL~~~-------------s~VtSlEvs 193 (334)
T KOG0278|consen 137 -----KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE----VQSLEFN-------------SPVTSLEVS 193 (334)
T ss_pred -----hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE----EEEEecC-------------CCCcceeec
Confidence 3678899999999999887 8889889999999999999976 4555544 579999999
Q ss_pred cCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 351 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 351 ~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
++|++|..+..+.|.+||..+ -.+++.++..... .+.+.+|+..++++|++|..++.||..++
T Consensus 194 ~dG~ilTia~gssV~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred cCCCEEEEecCceeEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCC
Confidence 999999988888999999986 6677666654432 38899999999999999999999999999
Q ss_pred CccceeeccCCCCCccccccc
Q 012535 431 SAESTTLEASKNPMSLFLHFQ 451 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~ 451 (461)
+......++|..|+-.....|
T Consensus 257 eEi~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 257 EEIGSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred ceeeecccCCCCceEEEEECC
Confidence 887665688888887666554
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=203.61 Aligned_cols=293 Identities=14% Similarity=0.205 Sum_probs=215.4
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
.....+++.+++-..|+.++.. .++||.......... +...+.... ...-.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~-------------------~~~~~k~kq---------n~~~S 89 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK-------------------CNHRFKTKQ---------NKFYS 89 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc-------------------eeeeccccc---------ceeee
Confidence 4567788888988888888866 788888765432200 000111111 01134
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccC---CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
+..|.|. +-+.++|++++..|.|.+||+.. ++....+..|. ..+. ++.|++....+
T Consensus 90 ~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~--------Rs~~-------~ldfh~tep~i----- 148 (839)
T KOG0269|consen 90 AADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE--------RSAN-------KLDFHSTEPNI----- 148 (839)
T ss_pred hhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhHhhhhc--------ccee-------eeeeccCCccE-----
Confidence 6678888 45678999999999999999986 33333333332 1222 67888777665
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+++|+.||.|++|| ++..+.... ..+....|++++|+|. +..|+++ +.|.+.+||++...++..
T Consensus 149 ------liSGSQDg~vK~~D-lR~~~S~~t-------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~ 214 (839)
T KOG0269|consen 149 ------LISGSQDGTVKCWD-LRSKKSKST-------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK 214 (839)
T ss_pred ------EEecCCCceEEEEe-eeccccccc-------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence 79999999999999 655444332 2556788999999997 7788888 899999999998777653
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+..|.+.|.++.|+|++ .+||+|+.|+.|+|||+...+... +.++..- .+|.+|+|
T Consensus 215 -------k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInTi-------------apv~rVkW 271 (839)
T KOG0269|consen 215 -------KLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINTI-------------APVGRVKW 271 (839)
T ss_pred -------HhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEeec-------------ceeeeeee
Confidence 577899999999999988 999999999999999998765321 2333332 68999999
Q ss_pred ccCCCE-EEEec---CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec-CCCEEEEecCCCeEEE
Q 012535 350 ARNGRH-ILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRV 424 (461)
Q Consensus 350 s~~g~~-l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~i 424 (461)
-|+.++ |++++ |-.|+|||++.+.-+..++..|...+. .++|.. |...|.+++.||.|..
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt---------------~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT---------------GIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc---------------ceeccCCCceeeEeecCccHHHH
Confidence 997665 44443 589999999988889999999998763 788865 4567889999988866
Q ss_pred EecCC
Q 012535 425 FGCSE 429 (461)
Q Consensus 425 w~~~~ 429 (461)
-.+++
T Consensus 337 h~~kn 341 (839)
T KOG0269|consen 337 HLFKN 341 (839)
T ss_pred hhhhc
Confidence 55554
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=5.5e-25 Score=207.22 Aligned_cols=269 Identities=13% Similarity=0.171 Sum_probs=195.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|+|+.|+|||++||+|+.|+.|.||+.......... +........-.++....+.+|.
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f-----gs~g~~~~vE~wk~~~~l~~H~---------- 129 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF-----GSTGGAKNVESWKVVSILRGHD---------- 129 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc-----cccccccccceeeEEEEEecCC----------
Confidence 3469999999999999999999999999999998741100000 0000112223566777889999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|..++|+| ++.++++++.|++|.+||..+.+...+...| .+.|. ++.|.|-|+++
T Consensus 130 --~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H--------~s~VK-------Gvs~DP~Gky~---- 186 (942)
T KOG0973|consen 130 --SDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH--------QSLVK-------GVSWDPIGKYF---- 186 (942)
T ss_pred --CccceeccCC--CccEEEEecccceEEEEccccceeeeeeecc--------ccccc-------ceEECCccCee----
Confidence 6799999994 6889999999999999999998777777666 33344 88999999995
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeee-cccccceeeEEeCCCCCEEEEe-C----CCeEEEEEccCC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-D----DLRINLWNLEIS 264 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~----d~~i~iwd~~~~ 264 (461)
++-+.|++|++|+ ...-..... .-..+. ..-...+..+.|+|||++|++. . -..+.|.+..+.
T Consensus 187 --------ASqsdDrtikvwr-t~dw~i~k~--It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW 255 (942)
T KOG0973|consen 187 --------ASQSDDRTLKVWR-TSDWGIEKS--ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW 255 (942)
T ss_pred --------eeecCCceEEEEE-cccceeeEe--eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc
Confidence 9999999999998 322111100 000000 1223456789999999999986 2 456777776544
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCC----CCC------------eEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPT----HCN------------MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~----~~~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
+... .+-+|..++.+++|+|. ..+ .+|+|+.|++|.||.....+..-. ++.+-.
T Consensus 256 k~~~--------~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v-i~~lf~- 325 (942)
T KOG0973|consen 256 KVDK--------DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV-IHNLFN- 325 (942)
T ss_pred eeee--------eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh-hhhhhc-
Confidence 4333 57789999999999982 101 789999999999999866554211 111111
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccC
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~ 371 (461)
.+|..++|+|||..|++++ ||+|.+..+..
T Consensus 326 -------------~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 326 -------------KSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred -------------CceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 5799999999999999887 79999999874
No 101
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.2e-24 Score=173.26 Aligned_cols=314 Identities=15% Similarity=0.223 Sum_probs=216.2
Q ss_pred ccccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.-.|.+.|+++.+.+ .|+|+++|+.||.|.+||++..... ++ ..... .+...--...-.+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~---e~--s~li~---k~~c~v~~~h~~~Hk--------- 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY---EA--SGLIA---KHKCIVAKQHENGHK--------- 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccch---hh--cccee---heeeeccccCCccce---------
Confidence 345999999999998 7899999999999999999764311 00 00000 000000011123455
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCC--ccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG--CGE 187 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~--~~~ 187 (461)
-.|..+.|.|- |...|.+++.|.++++||..+-+....+... +.|+ +-+++|-.. ++
T Consensus 102 ---y~iss~~WyP~-DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me---------~~VY-------shamSp~a~sHcL- 160 (397)
T KOG4283|consen 102 ---YAISSAIWYPI-DTGMFTSSSFDHTLKVWDTNTLQEAVDFKME---------GKVY-------SHAMSPMAMSHCL- 160 (397)
T ss_pred ---eeeeeeEEeee-cCceeecccccceEEEeecccceeeEEeecC---------ceee-------hhhcChhhhcceE-
Confidence 67999999994 4558999999999999999987766555543 3344 445555432 32
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE-Ee-CCCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~iwd~~~~~ 265 (461)
+++|..+-.|++.| +.. ..+... +.+|.+.|.++.|+|..++++ +| .||.|++||++...
T Consensus 161 ----------iA~gtr~~~VrLCD-i~S------Gs~sH~-LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 161 ----------IAAGTRDVQVRLCD-IAS------GSFSHT-LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred ----------EEEecCCCcEEEEe-ccC------Ccceee-eccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence 58899999999999 433 333334 489999999999999988765 55 69999999999765
Q ss_pred CceeeeccC----C---CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccc
Q 012535 266 QSFNIVDVK----P---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (461)
Q Consensus 266 ~~~~~~~~~----~---~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (461)
.++.+.+.. + .+-..|.+.++.++|+.++ .++++++.|..+++|+..+++... +.+.... ......+
T Consensus 223 gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl---~~~g~~~-~n~~~~~- 296 (397)
T KOG4283|consen 223 GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTL---REFGPII-HNQTTSF- 296 (397)
T ss_pred ceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccc---ccccccc-ccccccc-
Confidence 666555432 2 1234688999999999999 999999999999999999886431 1111100 0000001
Q ss_pred ccccceeEEEEccC-CCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec
Q 012535 339 EIIASISDIKFARN-GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (461)
Q Consensus 339 ~h~~~v~~l~~s~~-g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (461)
.+. +. +-+ +.++..-.++.+.++++-. +..+..+..|...+ .+.++.|+=+...+|.
T Consensus 297 ----~~~-~~-~~~s~vfv~~p~~~~lall~~~s-gs~ir~l~~h~k~i---------------~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 297 ----AVH-IQ-SMDSDVFVLFPNDGSLALLNLLE-GSFVRRLSTHLKRI---------------NCAAYRPDFEQCFTGD 354 (397)
T ss_pred ----eEE-Ee-ecccceEEEEecCCeEEEEEccC-ceEEEeeeccccee---------------eEEeecCchhhhhccc
Confidence 111 22 122 2233333458899999885 88888998885443 3778888888999999
Q ss_pred CCCeEEEEecC
Q 012535 418 YSNLFRVFGCS 428 (461)
Q Consensus 418 ~dg~i~iw~~~ 428 (461)
.|+.|..|-+.
T Consensus 355 ~d~ni~~w~p~ 365 (397)
T KOG4283|consen 355 MNGNIYMWSPA 365 (397)
T ss_pred cCCcccccccc
Confidence 99999999874
No 102
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.6e-25 Score=172.46 Aligned_cols=207 Identities=19% Similarity=0.325 Sum_probs=172.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
++|..++|+ .+|++.++++.|++|++|+...+.++..
T Consensus 18 gaV~avryN--~dGnY~ltcGsdrtvrLWNp~rg~likt----------------------------------------- 54 (307)
T KOG0316|consen 18 GAVRAVRYN--VDGNYCLTCGSDRTVRLWNPLRGALIKT----------------------------------------- 54 (307)
T ss_pred cceEEEEEc--cCCCEEEEcCCCceEEeecccccceeee-----------------------------------------
Confidence 889999999 7899999999999999999876654432
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
..+|...|..++.+.|+..|++| .|..+.+||+++++...
T Consensus 55 ------------------------------------YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R--- 95 (307)
T KOG0316|consen 55 ------------------------------------YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR--- 95 (307)
T ss_pred ------------------------------------ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee---
Confidence 25777889999999999999998 89999999999887664
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+.+|.+.|+.++|+.+. ..+++|+.|..+++||.++.... +++.+.... ..|.++..+
T Consensus 96 -----r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~e--PiQildea~------------D~V~Si~v~- 154 (307)
T KOG0316|consen 96 -----RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFE--PIQILDEAK------------DGVSSIDVA- 154 (307)
T ss_pred -----ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCC--ccchhhhhc------------CceeEEEec-
Confidence 588999999999999998 89999999999999999987542 355555444 679999886
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+..+++|+ ||++|.||++. +....-+-+|. |++++|++|++.++.++-|+.+++-|-.+|
T Consensus 155 -~heIvaGS~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred -ccEEEeeccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccchh
Confidence 45777777 79999999996 66655554543 349999999999999999999999999999
Q ss_pred CccceeeccCCC
Q 012535 431 SAESTTLEASKN 442 (461)
Q Consensus 431 ~~~~~~~~~~~~ 442 (461)
+.. ...++|..
T Consensus 216 klL-~sYkGhkn 226 (307)
T KOG0316|consen 216 KLL-KSYKGHKN 226 (307)
T ss_pred HHH-HHhccccc
Confidence 766 45666654
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=183.30 Aligned_cols=246 Identities=15% Similarity=0.233 Sum_probs=204.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccccc-CCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~ 109 (461)
.+-+.++|.|++||.|...||+|+.||.|++|.+.++. ++..|. .|.
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~-----------------------ClRrFdrAHt--------- 306 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ-----------------------CLRRFDRAHT--------- 306 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecch-----------------------HHHHhhhhhc---------
Confidence 45688999999999999999999999999999999887 444554 787
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|+|+.|+ .|+..+++++.|.++++.-++.|++.+.
T Consensus 307 ---kGvt~l~FS--rD~SqiLS~sfD~tvRiHGlKSGK~LKE-------------------------------------- 343 (508)
T KOG0275|consen 307 ---KGVTCLSFS--RDNSQILSASFDQTVRIHGLKSGKCLKE-------------------------------------- 343 (508)
T ss_pred ---cCeeEEEEc--cCcchhhcccccceEEEeccccchhHHH--------------------------------------
Confidence 779999999 7788999999999999998887764321
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+++|...|+...|.++|..++++ +||+|++|+.++.+...
T Consensus 344 ---------------------------------------frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 344 ---------------------------------------FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred ---------------------------------------hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh
Confidence 27899999999999999999999 89999999998665443
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
. + ...+....|+++..-|.++..++++....+|.|-++...- +++|...... .+...+++
T Consensus 385 T-f-----k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-----VrsfsSGkRE---------gGdFi~~~ 444 (508)
T KOG0275|consen 385 T-F-----KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-----VRSFSSGKRE---------GGDFINAI 444 (508)
T ss_pred h-c-----cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-----EeeeccCCcc---------CCceEEEE
Confidence 2 1 1223567889999999888999999999999999987543 4555432211 15677889
Q ss_pred EccCCCEEEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 349 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 349 ~s~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
.+|.|.++.+ |.|+.++.|.+.+ +++-.++..|+..+ ..++-+|..+.||+-++||.+++|.
T Consensus 445 lSpkGewiYcigED~vlYCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchhhhcC
Confidence 9999999998 5679999999986 89999999998765 4889999999999999999999995
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.3e-25 Score=178.81 Aligned_cols=281 Identities=17% Similarity=0.234 Sum_probs=209.1
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
+..+|.+.|+.++-......+.+++.|.+.+||.++++. ++..+.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-----------------------CL~~Y~GH~--------- 190 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-----------------------CLATYTGHT--------- 190 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecccc-----------------------ceeeecccc---------
Confidence 456899999999998888899999999999999999886 667899999
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEe---eeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF---DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
+.|++|.|++ .+.++++++.|++-.||...-+-..... ..+..+. -+.-+ |...
T Consensus 191 ---GSVNsikfh~--s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe----------------E~e~s-De~~- 247 (481)
T KOG0300|consen 191 ---GSVNSIKFHN--SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE----------------EEEHS-DEHN- 247 (481)
T ss_pred ---cceeeEEecc--ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh----------------hhhcc-cccc-
Confidence 8899999995 4679999999999999974321100000 0000000 00000 0000
Q ss_pred cccccCCCCCcccc---ccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEcc
Q 012535 187 ERNFGCASNDSSFP---PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (461)
Q Consensus 187 ~~~~~~~~~~~~~~---~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (461)
.... -+....|++ +... +.+|...|.+..|-..|+.++++ .|.+..+||++
T Consensus 248 ----------~d~d~~~~sD~~tiRv--------------Pl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 248 ----------RDTDSSEKSDGHTIRV--------------PLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred ----------cccccccccCCceeee--------------eeee-eeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence 0000 011112222 2222 37899999999999999999999 79999999999
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
+++... .+.+|....+.+.-+|.. +++++++.|-+.++||.+..-. ...+|.||..
T Consensus 303 tge~v~--------~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~---------------sV~VFQGHtd 358 (481)
T KOG0300|consen 303 TGEVVN--------ILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQ---------------SVAVFQGHTD 358 (481)
T ss_pred cCceec--------cccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcc---------------eeeeeccccc
Confidence 766442 588999999999999998 9999999999999999984321 1235666679
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (461)
.|+++.|.-+. .+++|+ |.+|++||+++...++.++...... ..++.+..+..++.--++..
T Consensus 359 tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 359 TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred ceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCce
Confidence 99999998764 566766 5999999999878888888765543 27888988889999999999
Q ss_pred EEEEecCCCC
Q 012535 422 FRVFGCSEGS 431 (461)
Q Consensus 422 i~iw~~~~~~ 431 (461)
|++||+....
T Consensus 422 vRlfDlnG~R 431 (481)
T KOG0300|consen 422 VRLFDLNGNR 431 (481)
T ss_pred EEEEecCCCc
Confidence 9999998654
No 105
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=4.9e-24 Score=174.41 Aligned_cols=288 Identities=14% Similarity=0.222 Sum_probs=197.8
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
.-...+.|+|||..|++-+.|..+++|++...... ++....+.+ ....+++--+ ...|
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys-------~~~~~~~~~----~~~~~~r~~e-----------g~tv 107 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYS-------KKADGPLNF----SKHLSYRYQE-----------GETV 107 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcc-------cCCCCcccc----ccceeEEecc-----------CCEE
Confidence 34567899999999999999999999998643211 000000000 0000111111 1457
Q ss_pred EEEEEee-----cCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 116 NKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 116 ~~v~~~p-----~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
...+|.+ +|+..++++.+.+.-|.+||.-+|++......
T Consensus 108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------------ 151 (406)
T KOG2919|consen 108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------------ 151 (406)
T ss_pred EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh------------------------------------
Confidence 8888874 34566899999999999999988875442221
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~ 270 (461)
|| . ...-....+++|+|||..|++|....|+++|+.........
T Consensus 152 -------------------yd-h----------------~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 152 -------------------YD-H----------------QDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred -------------------hh-h----------------HHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcc
Confidence 11 0 00002345799999999999999999999999544443332
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.......-.+..+.+.+++|+|.....++.|+...++-||.-..... +..+-+ |.+.|+.++|.
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llgg------------h~gGvThL~~~ 259 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGG------------HGGGVTHLQWC 259 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecc------------cCCCeeeEEec
Confidence 22211223345778899999998877999999999999888766654 344444 44899999999
Q ss_pred cCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 351 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 351 ~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
++|+.|++|. +..|..||++....++..+..|....+ +.| -....|++++|++|+.||.|++||++
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TN--------QRI----~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTN--------QRI----LFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCcc--------ceE----EEecCCCCceeeccCCCccEEEEecC
Confidence 9999999987 489999999987888888988876332 111 34556889999999999999999999
Q ss_pred CCCccceeeccCCCCCc
Q 012535 429 EGSAESTTLEASKNPMS 445 (461)
Q Consensus 429 ~~~~~~~~~~~~~~~~~ 445 (461)
.-......+..+.+.+.
T Consensus 328 ~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 328 DLGNEVSVTGNYSDTVN 344 (406)
T ss_pred CCCCccccccccccccc
Confidence 83232234444444433
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=200.32 Aligned_cols=261 Identities=17% Similarity=0.303 Sum_probs=203.6
Q ss_pred eeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccc
Q 012535 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (461)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (461)
.|+..+.+.. .....+|.+.|++++|..-+.+|++|+.|.++++||..+++ +...
T Consensus 232 ~~~~~~~~~i--~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----------------------C~~~ 286 (537)
T KOG0274|consen 232 LWDLNNGYLI--LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----------------------CTHS 286 (537)
T ss_pred EeecccceEE--EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-----------------------EEEE
Confidence 5777765432 22367899999999999878899999999999999998876 6678
Q ss_pred ccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccC
Q 012535 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (461)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (461)
+.+|. +.|.++... ..++++|+.|.+|++|++.++.+..+...+. +.|.
T Consensus 287 l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~--------~~V~------- 335 (537)
T KOG0274|consen 287 LQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT--------GPVN------- 335 (537)
T ss_pred ecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEecccc--------ccEE-------
Confidence 99999 889999886 4488889999999999999998888877542 2333
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
++... +.. +++|+.|+.|++|+ +. ..++.+.+ .+|...|.++.+.+. +.+++| -|+
T Consensus 336 ~v~~~--~~~------------lvsgs~d~~v~VW~-~~------~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 336 CVQLD--EPL------------LVSGSYDGTVKVWD-PR------TGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EEEec--CCE------------EEEEecCceEEEEE-hh------hceeeeee-cCCcceEEEEEecCc-ceEEeeeecc
Confidence 22332 444 59999999999999 32 56677776 889999999988776 788888 799
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
+|++||+++...+.. ++.+|.+-+..+.+. + ++|++++.|++|++||...++. ++++..+
T Consensus 393 ~IkvWdl~~~~~c~~-------tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~----~~~~~~~------ 452 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIH-------TLQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGEC----LRTLEGR------ 452 (537)
T ss_pred ceEeecCCchhhhhh-------hhcCCcccccccccc--c-ceeEeccccccEEEeecccCce----eeeeccC------
Confidence 999999997633332 578888888776665 3 7899999999999999999876 5555552
Q ss_pred ccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeec
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
|...|..+++. +...|+++.++.+++||+++ +.+...+-.+
T Consensus 453 -----~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~-~~~~~~l~~~ 493 (537)
T KOG0274|consen 453 -----HVGGVSALALG-KEEILCSSDDGSVKLWDLRS-GTLIRTLLST 493 (537)
T ss_pred -----CcccEEEeecC-cceEEEEecCCeeEEEeccc-Cchhhhhhhc
Confidence 22678888886 33455556679999999996 7776666333
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=189.79 Aligned_cols=252 Identities=19% Similarity=0.240 Sum_probs=190.6
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..++.+.|. .+...|++|+.|..|++|++..++......... ..|.+. .+.|.++++.+
T Consensus 176 gev~~v~~l--~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG------s~g~it-------~~d~d~~~~~~------ 234 (459)
T KOG0288|consen 176 GEVHDVEFL--RNSDTLATGGSDRIIKLWNVLGEKSELISTLAG------SLGNIT-------SIDFDSDNKHV------ 234 (459)
T ss_pred cccceeEEc--cCcchhhhcchhhhhhhhhcccchhhhhhhhhc------cCCCcc-------eeeecCCCceE------
Confidence 679999998 445699999999999999998776322222211 133444 78899999885
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++++.|+.+++|+ +..... +.+ +.+|+..|+++.|......+++| .|.+|++||+... .+.+.+
T Consensus 235 ------iAas~d~~~r~Wn-vd~~r~------~~T-LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~C~kt~ 299 (459)
T KOG0288|consen 235 ------IAASNDKNLRLWN-VDSLRL------RHT-LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-YCSKTV 299 (459)
T ss_pred ------EeecCCCceeeee-ccchhh------hhh-hcccccceeeehhhccccceeeccccchhhhhhhhhh-heeccc
Confidence 9999999999999 433222 222 48999999999998887778888 7999999999853 332211
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
+ ....+..|+.+ . ..+++|..|+.|++||.++... ....+.+ +.|+++..++
T Consensus 300 ------l--~~S~cnDI~~~--~-~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-------------g~vtSl~ls~ 351 (459)
T KOG0288|consen 300 ------L--PGSQCNDIVCS--I-SDVISGHFDKKVRFWDIRSADK----TRSVPLG-------------GRVTSLDLSM 351 (459)
T ss_pred ------c--ccccccceEec--c-eeeeecccccceEEEeccCCce----eeEeecC-------------cceeeEeecc
Confidence 1 24456666666 2 5799999999999999998875 4555554 6799999999
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+|..|.+++ |.++.+.|+++ .+....+...... +-.+...+.|||++.|+++||.||.|+||++.++
T Consensus 352 ~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 352 DGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCeEEeeecCCCceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 999999876 69999999996 6666666554321 1112358999999999999999999999999999
Q ss_pred CccceeeccCC
Q 012535 431 SAESTTLEASK 441 (461)
Q Consensus 431 ~~~~~~~~~~~ 441 (461)
+.+. .+....
T Consensus 420 KlE~-~l~~s~ 429 (459)
T KOG0288|consen 420 KLEK-VLSLST 429 (459)
T ss_pred eEEE-EeccCC
Confidence 8874 444433
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=191.74 Aligned_cols=309 Identities=14% Similarity=0.209 Sum_probs=222.6
Q ss_pred eEEEEEcCC--CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 38 ISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 38 V~~~~~s~~--g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
|+++. +|. =+.++.|+.+|.+.||++.+++ .+.+++++. ..|
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K-----------------------~v~~f~~~~------------s~I 205 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK-----------------------VVYTFQEFF------------SRI 205 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCc-----------------------EEEEecccc------------cce
Confidence 66664 553 3578999999999999999887 557888888 789
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
+++.=+|.-| .++.|..+|+|.+++++.++....+... .|.|. +++|..||..+
T Consensus 206 T~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d--------~g~Vt-------slSFrtDG~p~--------- 259 (910)
T KOG1539|consen 206 TAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQD--------WGRVT-------SLSFRTDGNPL--------- 259 (910)
T ss_pred eEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEcc--------cccee-------EEEeccCCCee---------
Confidence 9999987665 8999999999999999999888777653 35566 88999999987
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc-------
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS------- 267 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~------- 267 (461)
+++++..|.+.+|| +..... .......|.+.|....|.|....++++ .|+.+++|-.+++...
T Consensus 260 --las~~~~G~m~~wD-Le~kkl------~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 260 --LASGRSNGDMAFWD-LEKKKL------INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred --EEeccCCceEEEEE-cCCCee------eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 78888999999999 533222 222235788888888898888888887 6888887744311000
Q ss_pred ---------e----------------------------------------------------------------------
Q 012535 268 ---------F---------------------------------------------------------------------- 268 (461)
Q Consensus 268 ---------~---------------------------------------------------------------------- 268 (461)
+
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 0
Q ss_pred --------------eeec----------cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccc
Q 012535 269 --------------NIVD----------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (461)
Q Consensus 269 --------------~~~~----------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (461)
..+. +++..++.....+++++.++-| ++.+.|...|.|-+|++.++.. ...
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~----r~s 485 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIH----RKS 485 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCee----ecc
Confidence 0000 0112222334667899999998 9999999999999999999864 233
Q ss_pred cccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccc-------c--------
Q 012535 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP-------K-------- 388 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~-------~-------- 388 (461)
|.. -..|..+|++++...-++.+++++ +|.+.+||... ..++..+.-...... .
T Consensus 486 f~~---------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 486 FGD---------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred ccc---------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence 310 123558999999999889999865 79999999985 443333221110000 0
Q ss_pred ------------c-ccc-ccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccce
Q 012535 389 ------------L-CDL-YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 435 (461)
Q Consensus 389 ------------~-~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 435 (461)
+ ..+ -+.+ .|++++|||||++|++++.|+.|++||+.++.+...
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~n---ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGN---RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eeEEEEEchhhhhhHHhhcccc---ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 0 000 0222 345999999999999999999999999999976643
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=195.72 Aligned_cols=324 Identities=16% Similarity=0.252 Sum_probs=225.0
Q ss_pred ccccc-cceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccC----------------------
Q 012535 31 EVQEV-DIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSR---------------------- 86 (461)
Q Consensus 31 ~~~h~-~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 86 (461)
.+.|. +.|++++|..||. .||+|+..|.+-+||++..+.....+..+.+......+
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 45564 9999999999998 67788888999999999887665444333221111100
Q ss_pred Ccc--ccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc----eeE----------
Q 012535 87 HPE--FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKK---------- 150 (461)
Q Consensus 87 ~~~--~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~----~~~---------- 150 (461)
+++ -++++.-.||. .+-.||+|.- .++..+++++.|++++.+++.... +..
T Consensus 319 ~~dg~pR~LR~R~GHs------------~Pp~~irfy~-~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~ 385 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHS------------APPSCIRFYG-SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKV 385 (910)
T ss_pred CCCCcchheeeccCCC------------CCchheeeec-cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccc
Confidence 111 24445556676 8889999984 458899999999999888764211 000
Q ss_pred ------------EeeeecCCCccCCCCCccccc------------------------------cccCcceeecCCCcccc
Q 012535 151 ------------VFDWNVHPEKAAGNGPIFGSH------------------------------VSAIPKSYMANGGCGER 188 (461)
Q Consensus 151 ------------~~~~~~~~~~~~~~~~v~~~~------------------------------~~~~~~~~~~~g~~~~~ 188 (461)
+........+......+..++ ....+++.++.|.
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN---- 461 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN---- 461 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc----
Confidence 000000000000000000000 0011333334444
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEee--ecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
+.+.|...|.|-+|+ ++. ...+..| ...|..+|++++...-++.++++ .+|.+.+||.....
T Consensus 462 --------F~~IG~S~G~Id~fN-mQS------Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 462 --------FVFIGYSKGTIDRFN-MQS------GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred --------eEEEeccCCeEEEEE-ccc------CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 458899999999999 432 2222222 25899999999999999999998 89999999998543
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
.... + .....+.++.++... .+++.+..|-.|+++|..+.+. ++.|.+|. +.|+
T Consensus 527 -l~~~-------l-~l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kv----vR~f~gh~------------nrit 580 (910)
T KOG1539|consen 527 -LKKS-------L-RLGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKV----VREFWGHG------------NRIT 580 (910)
T ss_pred -eeee-------e-ccCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhh----hHHhhccc------------ccee
Confidence 2211 1 145667888888887 8999999999999999988776 56666665 8899
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC-CeEE
Q 012535 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-NLFR 423 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~ 423 (461)
+++|||||++|++++ |++|++||+.+ +.++..+...... +++.|+|+|.+||+...| .-|+
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt-~~lID~~~vd~~~----------------~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPT-GTLIDGLLVDSPC----------------TSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccC-cceeeeEecCCcc----------------eeeEECCCCCEEEEEEecCceEE
Confidence 999999999999987 79999999997 8888877655544 389999999999999988 7799
Q ss_pred EEecCC
Q 012535 424 VFGCSE 429 (461)
Q Consensus 424 iw~~~~ 429 (461)
+|--.+
T Consensus 644 lWsNks 649 (910)
T KOG1539|consen 644 LWSNKS 649 (910)
T ss_pred EEEchh
Confidence 997654
No 110
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=198.37 Aligned_cols=274 Identities=15% Similarity=0.204 Sum_probs=174.1
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCC--CccCCCCCccccccccCcceeec---CCCc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP--EKAAGNGPIFGSHVSAIPKSYMA---NGGC 185 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~---~g~~ 185 (461)
+.++|.++.|+ +||+|||+|+.|+.|+||.+...+........... ....+.+.+. .+..++ .++.
T Consensus 266 h~gaIw~mKFS--~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~-------p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 266 HKGAIWAMKFS--HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIE-------PSTSSEEKISSRT 336 (712)
T ss_pred cCCcEEEEEeC--CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccC-------ccccccccccccc
Confidence 33899999999 78999999999999999998775432221111000 0000000000 000000 0000
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~ 264 (461)
. ..-.+.....+.+.+ .......++.+.+ .||.+.|.++.|+.++ +|+++ -|.+|++|++..
T Consensus 337 s----------~~~~~~~s~~~~~p~----~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~- 399 (712)
T KOG0283|consen 337 S----------SSRKGSQSPCVLLPL----KAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR- 399 (712)
T ss_pred c----------ccccccCCccccCCC----ccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCCC-
Confidence 0 001111222222111 1112223444454 8999999999999776 55665 799999999984
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
+.+..+ ..|.+.|+||+|+|-+.++|++|+.||.||||++...+. +.-.+.+ .-|
T Consensus 400 ~~CL~~--------F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V----v~W~Dl~-------------~lI 454 (712)
T KOG0283|consen 400 KECLKV--------FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV----VDWNDLR-------------DLI 454 (712)
T ss_pred cceeeE--------EecCCeeEEEEecccCCCcEeecccccceEEeecCcCee----Eeehhhh-------------hhh
Confidence 444432 349999999999997779999999999999999988765 2222232 469
Q ss_pred eEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC-CEEEEecCCCeE
Q 012535 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLF 422 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i 422 (461)
++++|.|||++.+.|+. |.+++|+... .+....+..+.....+ ..-..|+.+.|.|.. ..|++.+.|..|
T Consensus 455 TAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk-------~~~~rITG~Q~~p~~~~~vLVTSnDSrI 526 (712)
T KOG0283|consen 455 TAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKK-------KQGKRITGLQFFPGDPDEVLVTSNDSRI 526 (712)
T ss_pred eeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCcc-------ccCceeeeeEecCCCCCeEEEecCCCce
Confidence 99999999999999995 9999999973 5555444433221110 001135789988754 357777889999
Q ss_pred EEEecCCCCccceeeccCCCCC
Q 012535 423 RVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 423 ~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
+|+|....+.+ ..+++....-
T Consensus 527 RI~d~~~~~lv-~KfKG~~n~~ 547 (712)
T KOG0283|consen 527 RIYDGRDKDLV-HKFKGFRNTS 547 (712)
T ss_pred EEEeccchhhh-hhhcccccCC
Confidence 99999765544 4555444433
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=193.16 Aligned_cols=283 Identities=15% Similarity=0.242 Sum_probs=202.6
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|+..-+.++|.|+|.+|++++.||.|++|+....... |+ .+.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P~-----ti~~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------PE-----TIDISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------Cc-----hhhccC-----------
Confidence 368999999999999999999999999999997654211 11 111133
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeE---EeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK---VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|.+++-. +.+|++++.+++|.+|.+..++... .+..+. . .++++-+|..+
T Consensus 57 -~~v~~ia~~----s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~-----------r-------~~~v~g~g~~i-- 111 (933)
T KOG1274|consen 57 -ELVSSIACY----SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPI-----------R-------DLAVSGSGKMI-- 111 (933)
T ss_pred -ceeEEEeec----ccceEEeeccceEEEeeCCCCCccceeeeeeccc-----------e-------EEEEecCCcEE--
Confidence 558888764 5599999999999999998765432 222221 1 67888899886
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
+.|+.|-.|++-+ +.... ..+. +.+|.++|.++.|+|++++||+. -||.|++||+..+...
T Consensus 112 ----------aagsdD~~vK~~~-~~D~s------~~~~-lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 112 ----------AAGSDDTAVKLLN-LDDSS------QEKV-LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred ----------EeecCceeEEEEe-ccccc------hhee-ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 9999999999877 32221 1222 48999999999999999999999 7999999999965544
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
..+-.+.+..-......+..++|+|++ ..|+..+.|+.|++|+...... ...+.... +...+..+
T Consensus 174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~----~f~Lr~~~----------~ss~~~~~ 238 (933)
T KOG1274|consen 174 KTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWEL----QFKLRDKL----------SSSKFSDL 238 (933)
T ss_pred hhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCcee----heeecccc----------cccceEEE
Confidence 333222211111125566789999998 7888889999999999988765 33333321 11459999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
.|+|+|+|||+++ +|.|.|||+++ -. .|.... .|.+++|.|+..-+-.-...|...+|
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t-~~------~~~~~~-------------~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT-HE------RHEFKR-------------AVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc-ch------hccccc-------------eeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999987 79999999985 11 132211 13588999988766544444444443
No 112
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=9.4e-24 Score=187.57 Aligned_cols=309 Identities=18% Similarity=0.200 Sum_probs=212.1
Q ss_pred EEEEcC---CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 40 AIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 40 ~~~~s~---~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
+..|++ ....||.+..||.|.++|...... .++-+.+..+..|. ..|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f-----------------r~ee~~lk~~~aH~------------nAif 104 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVF-----------------RLEERQLKKPLAHK------------NAIF 104 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhc-----------------chhhhhhccccccc------------ceeE
Confidence 367766 344899999999999999875432 12333455677888 8899
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCC
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (461)
.+.|.| ....|++++.|.++++||++++++......-.+ .+.+- +++|.|....+
T Consensus 105 Dl~wap--ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH------~~Svk-------S~cf~~~n~~v---------- 159 (720)
T KOG0321|consen 105 DLKWAP--GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH------TGSVK-------SECFMPTNPAV---------- 159 (720)
T ss_pred eeccCC--CceeEEEccCCceeeeeeeccceeecceeeccc------ccccc-------hhhhccCCCcc----------
Confidence 999996 356899999999999999999887765322221 34444 78888888765
Q ss_pred ccccccCCCcEEeeeeecccCcc---------------------ccceeeEeeecccccceee---EEeCCCCCEEEEe-
Q 012535 197 SSFPPGGVSSLRLPVVVTSQETN---------------------LVAGCRRIYAHAHDYHINS---ISNNSDGETFISA- 251 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~v~~---i~~~~~~~~l~~~- 251 (461)
+++|+.||.|.|||+ ...... ...+..+.. .++...|.+ +.+..|...||++
T Consensus 160 -F~tGgRDg~illWD~-R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSag 236 (720)
T KOG0321|consen 160 -FCTGGRDGEILLWDC-RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAG 236 (720)
T ss_pred -eeeccCCCcEEEEEE-eccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeecc
Confidence 799999999999994 322100 000011111 344445555 5567788889987
Q ss_pred C-CCeEEEEEccCCCCceeeeccCCCCCCCC---CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 252 D-DLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 252 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
. |+.|++||++.....++.-......+..| .-.+.++.....| .+|.+.+.|+.|++|++.+.... .+..+.+
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg 313 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS--PVAEFSG 313 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC--chhhccC
Confidence 4 99999999997655443221111122223 4457788888888 56666666999999999875431 1233333
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
+... ..-..-..+||+.+|++|+ |...++|.+.+.......+.+|.-.+ ++++|
T Consensus 314 ~~~~----------sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV---------------t~V~w 368 (720)
T KOG0321|consen 314 KLNS----------SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV---------------TTVRW 368 (720)
T ss_pred cccc----------eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE---------------EEEee
Confidence 2110 1122345689999999986 69999999998777888888888766 58999
Q ss_pred ecCC-CEEEEecCCCeEEEEecCCCCcc
Q 012535 407 SGDG-GRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 407 s~~~-~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.|.. .-++++++|..++||++.++-.+
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ccccCCCceeeccCcceEEEeccCchhh
Confidence 8753 34666799999999999876433
No 113
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.1e-23 Score=194.41 Aligned_cols=237 Identities=13% Similarity=0.185 Sum_probs=161.8
Q ss_pred ccccccceEEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+|.+.|.+++|+|+ +++||+|+.||+|+|||+.++.... . ........+.+|.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~---~------------~i~~p~~~L~gH~--------- 125 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV---K------------EIKDPQCILKGHK--------- 125 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc---c------------ccccceEEeecCC---------
Confidence 4579999999999996 7899999999999999997543100 0 0001233567887
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+|.. ...+++++.|++|++||+++++........ ..+. +++|+|+|..+
T Consensus 126 ---~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~---------~~V~-------SlswspdG~lL--- 182 (568)
T PTZ00420 126 ---KKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQINMP---------KKLS-------SLKWNIKGNLL--- 182 (568)
T ss_pred ---CcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEecC---------CcEE-------EEEECCCCCEE---
Confidence 779999999642 234578899999999999988754433211 1233 78999999985
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceee-----EEeCCCCCEEEEe-CC----CeEEEE
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS-----ISNNSDGETFISA-DD----LRINLW 259 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----i~~~~~~~~l~~~-~d----~~i~iw 259 (461)
++++.|+.|++|| +... .....+ .+|.+.+.. ..|++++.+|+++ .+ ++|++|
T Consensus 183 ---------at~s~D~~IrIwD-~Rsg------~~i~tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 183 ---------SGTCVGKHMHIID-PRKQ------EIASSF-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred ---------EEEecCCEEEEEE-CCCC------cEEEEE-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 8888999999999 4332 222332 677765433 2356888888875 44 479999
Q ss_pred EccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccc
Q 012535 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
|++....+.... .+..+.+.+...-..+++ .++++|+.|+.|++|++..+.. ..+....
T Consensus 246 Dlr~~~~pl~~~-----~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~-----~~l~~~~---------- 304 (568)
T PTZ00420 246 DLKNTTSALVTM-----SIDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSI-----RKVNEYK---------- 304 (568)
T ss_pred ECCCCCCceEEE-----EecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcE-----Eeecccc----------
Confidence 999655444332 223333433333344456 8899999999999999987642 2222111
Q ss_pred cccceeEEEEccC
Q 012535 340 IIASISDIKFARN 352 (461)
Q Consensus 340 h~~~v~~l~~s~~ 352 (461)
+..++.+++|.|.
T Consensus 305 s~~p~~g~~f~Pk 317 (568)
T PTZ00420 305 SCSPFRSFGFLPK 317 (568)
T ss_pred cCCCccceEEccc
Confidence 2256888999995
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.1e-24 Score=182.79 Aligned_cols=259 Identities=15% Similarity=0.237 Sum_probs=194.7
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee-EEeee------ecCCCcc---CCCCCccccccccCcceeec
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDW------NVHPEKA---AGNGPIFGSHVSAIPKSYMA 181 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~------~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 181 (461)
+-+|.+++++ +++.+.++++.|++|.-|++.+++.. .+... +..+... .+...+. +++.++
T Consensus 142 ~~s~~~vals--~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil-------~~avS~ 212 (479)
T KOG0299|consen 142 QLSVTSVALS--PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL-------TLAVSS 212 (479)
T ss_pred cCcceEEEee--ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE-------EEEEcC
Confidence 3789999999 56789999999999999999887643 22211 1111111 1222233 788999
Q ss_pred CCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEE
Q 012535 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (461)
Q Consensus 182 ~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd 260 (461)
||+++ ++|+.|..|.||+ ..+.+ ..+. +.+|.+.|.+++|-.....|.++ .|+.|++|+
T Consensus 213 Dgkyl------------atgg~d~~v~Iw~-~~t~e------hv~~-~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 213 DGKYL------------ATGGRDRHVQIWD-CDTLE------HVKV-FKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred CCcEE------------EecCCCceEEEec-Ccccc------hhhc-ccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 99986 9999999999999 43322 2233 38999999999999887777777 899999999
Q ss_pred ccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
++.....- ++.+|.+.|.++.....+ +.+-+|+.|+++++|++.... ...+.+ |
T Consensus 273 ~~~~s~ve--------tlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-----qlifrg------------~ 326 (479)
T KOG0299|consen 273 IDQLSYVE--------TLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-----QLIFRG------------G 326 (479)
T ss_pred hhHhHHHH--------HHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-----eeeeeC------------C
Confidence 98544332 678999999999998887 888888899999999995433 223333 3
Q ss_pred ccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC
Q 012535 341 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (461)
.+.+-|++|-.+ .++++|+| |.|.+|++.+ .+++.+.....+..+.+.....+ +.|.+++..|...++++|+.+
T Consensus 327 ~~sidcv~~In~-~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 327 EGSIDCVAFIND-EHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred CCCeeeEEEecc-cceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCC
Confidence 378999999754 67778776 9999999996 78887776544433322111111 567899999999999999999
Q ss_pred CeEEEEecCCC
Q 012535 420 NLFRVFGCSEG 430 (461)
Q Consensus 420 g~i~iw~~~~~ 430 (461)
|.|++|.+..+
T Consensus 402 G~vrLW~i~~g 412 (479)
T KOG0299|consen 402 GCVRLWKIEDG 412 (479)
T ss_pred CceEEEEecCC
Confidence 99999999988
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.7e-24 Score=182.76 Aligned_cols=238 Identities=16% Similarity=0.248 Sum_probs=182.9
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|. ++..+.+|- .
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-----------------------LL~v~~aHY------------Q 124 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-----------------------LLNVLSAHY------------Q 124 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecccc-----------------------HHHHHHhhc------------c
Confidence 45789999999999999999999999999999987 556778888 7
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.|+|+.|+ .|+.+|++|+.||.|.+|.+..-
T Consensus 125 ~ITcL~fs--~dgs~iiTgskDg~V~vW~l~~l----------------------------------------------- 155 (476)
T KOG0646|consen 125 SITCLKFS--DDGSHIITGSKDGAVLVWLLTDL----------------------------------------------- 155 (476)
T ss_pred ceeEEEEe--CCCcEEEecCCCccEEEEEEEee-----------------------------------------------
Confidence 79999999 88999999999999999986421
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
+....++. ..+...+ ..|.-+|+++...+. ...++++ .|.++++||+..+.....+
T Consensus 156 -----v~a~~~~~---------------~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 156 -----VSADNDHS---------------VKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred -----cccccCCC---------------ccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 11111111 1222233 688899999887655 4567777 8999999999977655543
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc--ceeEEE
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDIK 348 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~ 348 (461)
. .+..+.+++.+|.+ ..+++|+.+|.|.+.++.........+..-..+........+.||.+ .|+|++
T Consensus 215 ~---------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 215 T---------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred e---------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 2 46779999999998 99999999999999988765422111221222333344567788888 999999
Q ss_pred EccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccc
Q 012535 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (461)
Q Consensus 349 ~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~ 387 (461)
++-||.+|++|+ ||.|+|||+.+ .++++++....+++.
T Consensus 285 is~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kgpVt 323 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKGPVT 323 (476)
T ss_pred EecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhccccc
Confidence 999999999998 69999999996 788887775555554
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.3e-22 Score=181.93 Aligned_cols=283 Identities=11% Similarity=0.099 Sum_probs=186.1
Q ss_pred CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCC
Q 012535 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (461)
Q Consensus 47 g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~ 126 (461)
++.+++++.|+.|++||+.+++. ...+..+. .+.+++|+ +++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~~-------------~~~~l~~~--~dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVGQ-------------RPRGITLS--KDG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECCC-------------CCCceEEC--CCC
Confidence 35788999999999999877642 23444443 26789998 456
Q ss_pred cEE-EEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 127 ~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
..+ ++++.++.|++||..+++......... .+. .+.++|+++.+ ++++..++
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~~-------~~~~~~~g~~l-----------~~~~~~~~ 95 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGP---------DPE-------LFALHPNGKIL-----------YIANEDDN 95 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCC---------Ccc-------EEEECCCCCEE-----------EEEcCCCC
Confidence 665 566789999999999887654332211 011 56889999864 34556789
Q ss_pred cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CC-CeEEEEEccCCCCceeeeccCCCCCCCCCc
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (461)
.+++|| +... .....+ .+...+.+++|+|++++++++ .+ ..+.+||.++....... . ...
T Consensus 96 ~l~~~d-~~~~------~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--------~-~~~ 157 (300)
T TIGR03866 96 LVTVID-IETR------KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV--------L-VDQ 157 (300)
T ss_pred eEEEEE-CCCC------eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE--------E-cCC
Confidence 999999 4321 122222 122346789999999999988 44 45777898754332211 1 223
Q ss_pred ceEEEEEeCCCCCeEE-EEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEe--c
Q 012535 284 VITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D 360 (461)
Q Consensus 284 ~v~~v~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~--~ 360 (461)
.+.+++|+|++ +.|+ ++..++.|++||+++++.. ..+..+..... .+ ......++|+|++++++.+ +
T Consensus 158 ~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~~----~~-~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 158 RPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGVH----PE-AVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred CccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecccccc----cc-cCCccceEECCCCCEEEEEcCC
Confidence 45789999998 6664 5556999999999987642 22221100000 00 0124568899999986553 3
Q ss_pred CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEe-cCCCeEEEEecCCCCccceeecc
Q 012535 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEA 439 (461)
Q Consensus 361 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~ 439 (461)
++.+.+||+.+ ++....+..+ ..+ ++++|+|+|++|+++ +.+|.|++||+.+++.. ..++.
T Consensus 228 ~~~i~v~d~~~-~~~~~~~~~~-~~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~ 289 (300)
T TIGR03866 228 ANRVAVVDAKT-YEVLDYLLVG-QRV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-KSIKV 289 (300)
T ss_pred CCeEEEEECCC-CcEEEEEEeC-CCc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEEEc
Confidence 57899999985 6655544322 222 489999999999876 56899999999998765 34443
Q ss_pred C
Q 012535 440 S 440 (461)
Q Consensus 440 ~ 440 (461)
.
T Consensus 290 ~ 290 (300)
T TIGR03866 290 G 290 (300)
T ss_pred c
Confidence 3
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.8e-23 Score=184.44 Aligned_cols=290 Identities=14% Similarity=0.213 Sum_probs=213.7
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
...|.||||+.+.+.||.+-.||.|-||++..+ +-+...+.+++. ..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~----------------------w~~~~vi~g~~d-----------rs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN----------------------WFLEPVIHGPED-----------RS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC----------------------ceeeEEEecCCC-----------Cc
Confidence 367999999999999999999999999998753 334556677663 78
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
|.+++|+ ++.+|.+.+.+|.|.-||+.+.+.+...... .+.++ +++.+|.+..
T Consensus 72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~--------gg~IW-------siai~p~~~~--------- 124 (691)
T KOG2048|consen 72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN--------GGAIW-------SIAINPENTI--------- 124 (691)
T ss_pred eeeEEEc---cCCeEEeecCCceEEEEecccCceeEEecCC--------Cccee-------EEEeCCccce---------
Confidence 9999998 3568999999999999999998776655443 34455 6667777766
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeecc
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
++.|++||.+..++ +.... ....+.+ ....+.|.+++|+|++..+++| .||.|++||...+.... +.+.
T Consensus 125 ---l~IgcddGvl~~~s-~~p~~----I~~~r~l-~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~ 194 (691)
T KOG2048|consen 125 ---LAIGCDDGVLYDFS-IGPDK----ITYKRSL-MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITM 194 (691)
T ss_pred ---EEeecCCceEEEEe-cCCce----EEEEeec-ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-Eeee
Confidence 48999999666655 22211 1222222 4456899999999999999999 89999999999666554 3333
Q ss_pred CCCCCCC-CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 274 KPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 274 ~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
+...+.. ...-|+++.|-.++ .|++|...|+|.+||...+.+ +..+..+. ..|.+++..++
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTL----iqS~~~h~------------adVl~Lav~~~ 256 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTL----IQSHSCHD------------ADVLALAVADN 256 (691)
T ss_pred cccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcch----hhhhhhhh------------cceeEEEEcCC
Confidence 3233333 45668899998765 899999999999999999887 45555554 78999999999
Q ss_pred CCEEEEec-CCeEEEEEccCCCCC---eeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 353 GRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 353 g~~l~s~~-d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+.++++++ |+.|.-|.....+.. ......|...+ .+++..++ .|++|+.|..+.+=...
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv---------------rs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV---------------RSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccc---------------eeeeeecc--eEEecceeeEEEEcccc
Confidence 88888865 888888887653331 12223344333 37777765 88999999888876555
Q ss_pred C
Q 012535 429 E 429 (461)
Q Consensus 429 ~ 429 (461)
.
T Consensus 320 ~ 320 (691)
T KOG2048|consen 320 E 320 (691)
T ss_pred c
Confidence 4
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=5.2e-24 Score=182.08 Aligned_cols=231 Identities=20% Similarity=0.304 Sum_probs=169.4
Q ss_pred ccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
...+.+.+.|+.++..| .+...+++.+..+.|.|||...-.-...
T Consensus 118 ~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~---------------------------------- 162 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPK---------------------------------- 162 (422)
T ss_pred EEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCccc----------------------------------
Confidence 33445568899999998 4566888888999999999764321110
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI 263 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~ 263 (461)
.++.....++ +.+|...-.+++|++... .|+++ +|++|++||+..
T Consensus 163 -------------~~~~~~Pdl~--------------------L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 163 -------------ASGECRPDLR--------------------LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred -------------ccccCCCceE--------------------EEeecccccccccccccceeEeeccCCCcEEEEeccc
Confidence 1111111111 256777667799998733 45556 899999999986
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (461)
....-.....+ ..+.+|...|..++|+|....+|++++.|+.+.|||+|++. .+.....+. |.+.
T Consensus 210 ~~~~~~~~~p~-~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~a------------h~~~ 274 (422)
T KOG0264|consen 210 ESKEDKVVDPK-TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVKA------------HSAE 274 (422)
T ss_pred cccCCccccce-EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--CCCcccccc------------cCCc
Confidence 55421111111 24778999999999999887899999999999999999741 112344444 4489
Q ss_pred eeEEEEccC-CCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC-CCEEEEecCCC
Q 012535 344 ISDIKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSN 420 (461)
Q Consensus 344 v~~l~~s~~-g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg 420 (461)
|.+++|+|- +..||+|+ |++|++||+++-.+++..+.+|...+ +.+.|+|. ...||+++.|+
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCC
Confidence 999999994 45566676 79999999998788999999999876 59999997 46899999999
Q ss_pred eEEEEecCCCCccc
Q 012535 421 LFRVFGCSEGSAES 434 (461)
Q Consensus 421 ~i~iw~~~~~~~~~ 434 (461)
++.|||+..-..++
T Consensus 340 rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQ 353 (422)
T ss_pred cEEEEecccccccc
Confidence 99999998755554
No 119
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=178.89 Aligned_cols=308 Identities=16% Similarity=0.172 Sum_probs=207.4
Q ss_pred ccccccceEEEEEcCCC--CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g--~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
..-+.+.|++++|+|.. +++|+|+.-|.|-+||+.+.+ |+..-...+..|.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------------------~d~d~v~~f~~hs-------- 234 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------------------KDKDGVYLFTPHS-------- 234 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-------------------CccCceEEeccCC--------
Confidence 34578999999999954 589999999999999996433 2334455678888
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
.+|.+|.|+|. +...+++.+.||+|++-|++++....+...... ...+. ++.|+.+...+
T Consensus 235 ----~~Vs~l~F~P~-n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d------~~~fs-------~~d~~~e~~~v-- 294 (498)
T KOG4328|consen 235 ----GPVSGLKFSPA-NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTD------NIWFS-------SLDFSAESRSV-- 294 (498)
T ss_pred ----ccccceEecCC-ChhheeeeccCceeeeeeecchhhHHHhhcCcc------ceeee-------eccccCCCccE--
Confidence 88999999984 456899999999999999987754443333211 00111 34455555543
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCC
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~ 266 (461)
+.++.-|...+|| +........ .+.-|...|.+++++|... +|+++ -|++.+|||++....
T Consensus 295 ----------l~~~~~G~f~~iD-~R~~~s~~~------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 295 ----------LFGDNVGNFNVID-LRTDGSEYE------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred ----------EEeecccceEEEE-eecCCccch------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC
Confidence 7777777999999 544332111 1356778999999999854 56677 699999999986543
Q ss_pred cee-eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 267 SFN-IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 267 ~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
... ++ ....|...|.++.|+|.+ -.|++.+.|.+|+|||..--........++.... ....|. ...
T Consensus 358 K~sp~l-----st~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~------~t~Rwl-T~f 424 (498)
T KOG4328|consen 358 KASPFL-----STLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN------RTGRWL-TPF 424 (498)
T ss_pred CCCcce-----ecccccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceeeccC------cccccc-cch
Confidence 332 11 344599999999999998 4599999999999999841000000112221111 111122 244
Q ss_pred EEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-EEEEecCCCeEE
Q 012535 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFR 423 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~ 423 (461)
...|.|+..++++|.. ..|-|+|-.. ++.+..+ |......++ --..|+|-+. +++.++..|.|+
T Consensus 425 KA~W~P~~~li~vg~~~r~IDv~~~~~-~q~v~el--~~P~~~tI~-----------~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 425 KAAWDPDYNLIVVGRYPRPIDVFDGNG-GQMVCEL--HDPESSTIP-----------SVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred hheeCCCccEEEEeccCcceeEEcCCC-CEEeeec--cCccccccc-----------cceeecccccceeccCCccceEE
Confidence 5689999999999986 8899999874 5545444 332221111 1357999988 555556789999
Q ss_pred EEecCC
Q 012535 424 VFGCSE 429 (461)
Q Consensus 424 iw~~~~ 429 (461)
||--+.
T Consensus 491 vft~k~ 496 (498)
T KOG4328|consen 491 VFTNKK 496 (498)
T ss_pred EEecCC
Confidence 996543
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=171.59 Aligned_cols=286 Identities=15% Similarity=0.244 Sum_probs=206.8
Q ss_pred ccccCCceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCC--------cccccccc
Q 012535 9 EAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG--------QRRDLEMM 80 (461)
Q Consensus 9 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~--------~~~~~~~~ 80 (461)
.|......|.+.. -+......+|.+.|+|+.|++.+.++++++.|++-.||...-.-.++. ...+.+..
T Consensus 167 SADhTA~iWs~Es---g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s 243 (481)
T KOG0300|consen 167 SADHTARIWSLES---GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS 243 (481)
T ss_pred ccccceeEEeecc---ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence 3444457788764 334556778999999999999999999999999999998321111100 00011111
Q ss_pred cc-------ccc-CCcc-ccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEE
Q 012535 81 DY-------SMS-RHPE-FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV 151 (461)
Q Consensus 81 ~~-------~~~-~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 151 (461)
.. +.. -.|. -..+..|.+|. ..|.+..|. ..|..+++++.|++..+||+++++....
T Consensus 244 De~~~d~d~~~~sD~~tiRvPl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~ 309 (481)
T KOG0300|consen 244 DEHNRDTDSSEKSDGHTIRVPLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNI 309 (481)
T ss_pred cccccccccccccCCceeeeeeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceecc
Confidence 10 000 0011 12345567777 779999998 5577999999999999999998875432
Q ss_pred eeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecc
Q 012535 152 FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA 231 (461)
Q Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 231 (461)
+.|
T Consensus 310 -----------------------------------------------------------------------------LtG 312 (481)
T KOG0300|consen 310 -----------------------------------------------------------------------------LTG 312 (481)
T ss_pred -----------------------------------------------------------------------------ccC
Confidence 256
Q ss_pred cccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEE
Q 012535 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (461)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 310 (461)
|....+.++-+|..++++++ .|.+.++||++..-..+. .+++|.+.|+++.|..+. .+++|+.|.+|++|
T Consensus 313 Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~-------VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 313 HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVA-------VFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVW 383 (481)
T ss_pred cchhccccccCCcceEEEEeccCceeEeccchhhcceee-------eecccccceeEEEEecCC--ceeecCCCceEEEe
Confidence 77777778888999999988 799999999984333332 488999999999999875 78999999999999
Q ss_pred ECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEE-----eeccC
Q 012535 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-----QVHEH 384 (461)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~-----~~~~~ 384 (461)
|+++-+.- +.++... .+++.++.+..+..++.--| ..|++||+. +..+..+ ++|..
T Consensus 384 dLrNMRsp---lATIRtd-------------S~~NRvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrR 445 (481)
T KOG0300|consen 384 DLRNMRSP---LATIRTD-------------SPANRVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRR 445 (481)
T ss_pred eeccccCc---ceeeecC-------------CccceeEeecCCceEEeccCCceEEEEecC--CCccccCCcccccccce
Confidence 99886532 4444443 57999999987778887666 899999997 4444433 45665
Q ss_pred ccccccccccCCCccceeeEEEecCC--CEEEEecCCCeEEEEecCCC
Q 012535 385 LRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~ 430 (461)
.+ .+++|..+. .-|++++.|..+.=|++...
T Consensus 446 MV---------------~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 446 MV---------------TCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ee---------------eeeeccccCcccccccccccceeeeeEeccc
Confidence 54 489998664 35889999999999998753
No 121
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=175.37 Aligned_cols=248 Identities=15% Similarity=0.181 Sum_probs=191.0
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...+|+..|+.+.|+|+...+++++.|..|+||...... .......|+
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----------------------~~~~~~~h~--------- 303 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----------------------EPTSSRPHE--------- 303 (506)
T ss_pred hccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----------------------Ccccccccc---------
Confidence 356899999999999999999999999999999986543 334567787
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
++|+.+..+| .|.||++++.|++..+.|++++............ -.+. +.+|+|||-.+
T Consensus 304 ---~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~------v~~t-------s~~fHpDgLif--- 362 (506)
T KOG0289|consen 304 ---EPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD------VEYT-------SAAFHPDGLIF--- 362 (506)
T ss_pred ---ccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeecccc------ceeE-------EeeEcCCceEE---
Confidence 8899999995 4779999999999999999999876655543111 0112 78999999984
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
.+|..|+.+++|| +..... ... +.+|+++|..|+|+.+|-+|+++ +|+.|++||++..+...
T Consensus 363 ---------gtgt~d~~vkiwd-lks~~~------~a~-Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 363 ---------GTGTPDGVVKIWD-LKSQTN------VAK-FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred ---------eccCCCceEEEEE-cCCccc------ccc-CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 9999999999999 544332 222 37899999999999999999999 89999999999655332
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
.+ .+.. ...+.++.|.+.| .+|+.++.|=.|++++-.+.. +..+..+..+ .+..+++.
T Consensus 426 t~------~l~~-~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~--W~~~~~~~~~------------sg~st~v~ 483 (506)
T KOG0289|consen 426 TI------QLDE-KKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKS--WTEIKELADH------------SGLSTGVR 483 (506)
T ss_pred ee------eccc-cccceeEEEcCCC-CeEEeecceeEEEEEeccccc--ceeeehhhhc------------ccccceee
Confidence 21 2222 2368999999999 899999877777777644432 2223444333 47789999
Q ss_pred EccCCCEEEEec-CCeEEEEEc
Q 012535 349 FARNGRHILSRD-YMTLKLWDI 369 (461)
Q Consensus 349 ~s~~g~~l~s~~-d~~i~vwd~ 369 (461)
|....+++++++ |..++++.+
T Consensus 484 Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccceEEeeccchhheEEeec
Confidence 999999999987 577777654
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.5e-23 Score=168.72 Aligned_cols=254 Identities=15% Similarity=0.247 Sum_probs=183.8
Q ss_pred ceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccc
Q 012535 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (461)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (461)
.-|++..- +...+.....|.++|.+++|+.||..+++|+.|+.+++||+.+++. .
T Consensus 53 R~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~------------------------~ 107 (347)
T KOG0647|consen 53 RIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV------------------------S 107 (347)
T ss_pred EEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe------------------------e
Confidence 44777753 2333344667999999999999999999999999999999999864 3
Q ss_pred cccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccccccc
Q 012535 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (461)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (461)
.+..|. .+|..+.|.+..+-..|++|+.|++|+.||.+............. +
T Consensus 108 ~v~~Hd------------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR---------v------- 159 (347)
T KOG0647|consen 108 QVAAHD------------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER---------V------- 159 (347)
T ss_pred eeeecc------------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce---------e-------
Confidence 677888 889999999765556899999999999999998776666555422 1
Q ss_pred CcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CC
Q 012535 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (461)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (461)
+..| ....+++++..+..|.+|+ +.+....... . ...-...++|++..++.+.++.| -+
T Consensus 160 ----Ya~D----------v~~pm~vVata~r~i~vyn-L~n~~te~k~----~-~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 160 ----YAAD----------VLYPMAVVATAERHIAVYN-LENPPTEFKR----I-ESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred ----eehh----------ccCceeEEEecCCcEEEEE-cCCCcchhhh----h-cCcccceeeEEEEEecCCceEeeeec
Confidence 1111 1123468899999999999 6443221110 0 02233567899988888878888 69
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCC----CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMED----LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
|.+.+..++...+ ..-+.+|..+-.+ .--.|++|+|+|.. ..|++++.||++.+||-..... +.+.+.+.
T Consensus 220 Grv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~k----Lk~s~~~~ 293 (347)
T KOG0647|consen 220 GRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTK----LKTSETHP 293 (347)
T ss_pred ceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhh----hhccCcCC
Confidence 9999998886533 2222222211111 12357899999987 8999999999999999876543 44444444
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEe
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSR 359 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~ 359 (461)
.+|++++|+.+|.++|-+
T Consensus 294 ------------qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 294 ------------QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ------------CccceeEecCCCCEEEEE
Confidence 789999999999998864
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=173.30 Aligned_cols=267 Identities=17% Similarity=0.276 Sum_probs=183.8
Q ss_pred ccccccceEEEEEcCCC--CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g--~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
.+.|.+.|+-+.-++-| .+.|+=+..|.|.||++...- +.+......... .+.+.+.++.+|.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l------~~l~~~~~~~~~-s~~~Pl~t~~ghk-------- 211 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL------NALSEPGLEVKD-SEFRPLFTFNGHK-------- 211 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh------hhhcCccccccc-cccCceEEecccC--------
Confidence 45688888888887754 466666789999999986421 111111111111 3455667788888
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..-..++|||...| .+++|..-+.|++|...++..+. +...
T Consensus 212 ----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~v-------------------------------d~~P--- 252 (440)
T KOG0302|consen 212 ----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKV-------------------------------DQRP--- 252 (440)
T ss_pred ----ccceeeeccccccc-ccccCccccceEeeeeccCceee-------------------------------cCcc---
Confidence 44789999985544 68888888889999887764321 1110
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCC
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
+.+|+..|..++|+|. ...|++| .||+|+|||++....
T Consensus 253 ----------------------------------------f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 253 ----------------------------------------FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ----------------------------------------ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 2579999999999998 4567777 699999999997644
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
...+ ....|...|+.|.|+... .+||+|+.||+++|||+|+-+.- .++.+|+.| ..+|++
T Consensus 293 ~~~~------~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~H------------k~pIts 352 (440)
T KOG0302|consen 293 KAAV------STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-QPVATFKYH------------KAPITS 352 (440)
T ss_pred ccee------EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-CcceeEEec------------cCCeeE
Confidence 3332 246799999999999998 59999999999999999875532 234455555 489999
Q ss_pred EEEccC--CCEEEEecCCeEEEEEccCCCC---------------CeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 347 IKFARN--GRHILSRDYMTLKLWDINMDSG---------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 347 l~~s~~--g~~l~s~~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
+.|+|. +.++++|.|..|.+||+..... +.+.+-.|.+.. .+-.+.|+++
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH~Q 419 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWHRQ 419 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------HhhhheeccC
Confidence 999993 3344446689999999975211 112233343321 1127889987
Q ss_pred -CCEEEEecCCCeEEEE
Q 012535 410 -GGRVATGSYSNLFRVF 425 (461)
Q Consensus 410 -~~~l~s~~~dg~i~iw 425 (461)
..+|++.+.||. .||
T Consensus 420 iPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 420 IPGLLVSTAIDGF-NVF 435 (440)
T ss_pred CCCeEEEecccce-eEE
Confidence 458888888874 444
No 124
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.7e-23 Score=183.36 Aligned_cols=313 Identities=14% Similarity=0.167 Sum_probs=212.5
Q ss_pred cccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCC
Q 012535 21 QVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (461)
Q Consensus 21 ~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (461)
+.|..+......+|++.|.|++..|.|.+||+|+.||+|+||.+.++..+ ..++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----------------------r~~~--- 439 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----------------------RTVQ--- 439 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------EEEe---
Confidence 44666666678899999999999999999999999999999999988643 2221
Q ss_pred cchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeE------Eeeee-cCCC-------------c
Q 012535 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK------VFDWN-VHPE-------------K 160 (461)
Q Consensus 101 ~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~------~~~~~-~~~~-------------~ 160 (461)
..+.|.||+|+|.++-..|+++-.+. +.|-+..-|.-.. .+... .... .
T Consensus 440 ----------~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~ 508 (733)
T KOG0650|consen 440 ----------FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLD 508 (733)
T ss_pred ----------ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhh
Confidence 11449999999877655555555544 6666544331000 00000 0000 0
Q ss_pred cCCCC--CccccccccCcceeecCCCcccccccCCCCCcccccc---CCCcEEeeeeecccCccccceeeEeeecccccc
Q 012535 161 AAGNG--PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG---GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH 235 (461)
Q Consensus 161 ~~~~~--~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (461)
....+ .+......-..+.|+..|.++ ++.. ....|.|.+ +....... . +....+.
T Consensus 509 e~~~~v~~~I~~~k~i~~vtWHrkGDYl------------atV~~~~~~~~VliHQ-LSK~~sQ~------P-F~kskG~ 568 (733)
T KOG0650|consen 509 ELEKGVCIVIKHPKSIRQVTWHRKGDYL------------ATVMPDSGNKSVLIHQ-LSKRKSQS------P-FRKSKGL 568 (733)
T ss_pred hhccceEEEEecCCccceeeeecCCceE------------EEeccCCCcceEEEEe-cccccccC------c-hhhcCCc
Confidence 00000 111111122266777777764 5433 345667666 43322211 1 2344577
Q ss_pred eeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCc
Q 012535 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (461)
Q Consensus 236 v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (461)
|.++.|+|...+|+++....|++||+.... ..+ .+......|..++.+|.| .-|+.|+.|+.+..+|+.-.
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~kqe-lvK-------kL~tg~kwiS~msihp~G-Dnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSKQE-LVK-------KLLTGSKWISSMSIHPNG-DNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhHHH-HHH-------HHhcCCeeeeeeeecCCC-CeEEEecCCCeeEEEEcccC
Confidence 899999999999999977899999998533 322 344467789999999999 78899999999999999765
Q ss_pred ccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCC--------CCCeeEEeeccCcc
Q 012535 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD--------SGPVATFQVHEHLR 386 (461)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~--------~~~~~~~~~~~~~~ 386 (461)
.. ..+++..|. ..+++++|++.-.++++|+| |++.|+.-.-. --+++.+.+|....
T Consensus 640 sk---Pyk~lr~H~------------~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 640 SK---PYKTLRLHE------------KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred cc---hhHHhhhhh------------hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 42 145555555 78999999999899999886 99998853311 12466777776541
Q ss_pred ccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
-..|+++.|+|...+|++++.||.|++|
T Consensus 705 -----------~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 -----------DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----------ccceEeecccCCCceEEecCCCceEEee
Confidence 1225688999999999999999999998
No 125
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.9e-24 Score=188.84 Aligned_cols=334 Identities=15% Similarity=0.193 Sum_probs=221.8
Q ss_pred CCceeeeccccc---cCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcc
Q 012535 13 QPLEWKFSQVFG---ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (461)
Q Consensus 13 ~~~~w~~~~~~~---~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (461)
....|++.|..+ .+.......|.+.|+.++...+|+.|++++.|-+|++|+...+...
T Consensus 48 ~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~------------------- 108 (735)
T KOG0308|consen 48 IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF------------------- 108 (735)
T ss_pred eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch-------------------
Confidence 346698887644 3334445579999999999999999999999999999998765322
Q ss_pred ccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCC---CCC
Q 012535 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG---NGP 166 (461)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~---~~~ 166 (461)
+..++..|. +-|.|+++- ..+...+++|+.|+.|.+||++.+....+..........+. ..+
T Consensus 109 --c~stir~H~------------DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 109 --CMSTIRTHK------------DYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred --hHhhhhccc------------chheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 566788898 779999983 25677999999999999999998743111111111111111 122
Q ss_pred ccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC
Q 012535 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (461)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (461)
++ +++..+.|.. +++|+.++.+++|| -.... +..-++||+..|.++..+++|.
T Consensus 174 iY-------SLA~N~t~t~------------ivsGgtek~lr~wD-prt~~-------kimkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 174 IY-------SLAMNQTGTI------------IVSGGTEKDLRLWD-PRTCK-------KIMKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred ee-------eeecCCcceE------------EEecCcccceEEec-ccccc-------ceeeeeccccceEEEEEcCCCC
Confidence 33 6677777765 49999999999999 21111 1112479999999999999999
Q ss_pred EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccc
Q 012535 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
.++++ +||+|++||+....... ++..|.+.|+++..+|+- ..+++|+.||.|..=|+++...+ ...+
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~--------T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~---tlic 294 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLA--------TYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKS---TLIC 294 (735)
T ss_pred eEeecCCCceEEeeeccccceee--------eEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhh---eEee
Confidence 99999 89999999998544332 456689999999999998 89999999999999999985321 2222
Q ss_pred ccccCCCccccccccccceeEEEEccC-CCEEEEecCCeEEEEEccCCCCCeeEE---eeccC-cccccccc-----ccC
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDYMTLKLWDINMDSGPVATF---QVHEH-LRPKLCDL-----YEN 395 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~-g~~l~s~~d~~i~vwd~~~~~~~~~~~---~~~~~-~~~~~~~~-----~~~ 395 (461)
+.. .+|..+..+.. ...-++..|+.|+-|.... ...+... ..+.. .....+.. +-.
T Consensus 295 k~d-------------aPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi 360 (735)
T KOG0308|consen 295 KED-------------APVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-DIALSVSGDLDFFSTDSNNHSCDLTNTPDSVI 360 (735)
T ss_pred cCC-------------CchhhhhhccccCCceeeeccccceecCCcc-ccccccCCCCCcccccCCCccccccCCCceec
Confidence 221 34444544432 2223334456677776543 1110000 00000 00000000 001
Q ss_pred CCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 396 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 396 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..-..+...+.-.|.+.+++=...|.+.+||+-...+.
T Consensus 361 ~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 361 PGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKV 398 (735)
T ss_pred cCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeeh
Confidence 11112335556678899999999999999999876443
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.8e-22 Score=181.82 Aligned_cols=358 Identities=14% Similarity=0.162 Sum_probs=223.0
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccc-cccccCCccccccccccCCCcchhhccccccccce
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMM-DYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
.-.|++.+ .++|++|+.+|.|+||+..+..-.+.....+... ...--..|+......-.+-- ...
T Consensus 262 nAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f------------PD~ 327 (1080)
T KOG1408|consen 262 NANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF------------PDA 327 (1080)
T ss_pred ccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC------------Cce
Confidence 34566665 6799999999999999988765443332221111 00000001111111111111 224
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee-EEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
-++.|.+. ...+.+.-.|..++|||++.-... +....- +++..|+.....|-.+. +| ...+.-
T Consensus 328 IA~~Fdet--~~klscVYndhSlYvWDvrD~~kvgk~~s~l------yHS~ciW~Ve~~p~nv~-~~-------~~aclp 391 (1080)
T KOG1408|consen 328 IACQFDET--TDKLSCVYNDHSLYVWDVRDVNKVGKCSSML------YHSACIWDVENLPCNVH-SP-------TAACLP 391 (1080)
T ss_pred eEEEecCC--CceEEEEEcCceEEEEeccccccccceeeee------eccceeeeecccccccc-Cc-------ccccCC
Confidence 46677744 558888999999999999853211 111110 11222332111110000 00 012223
Q ss_pred CCccccccCCCcEEeeeeecccCcc-------ccceeeEe-----------------------eecccccceeeEEeCCC
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETN-------LVAGCRRI-----------------------YAHAHDYHINSISNNSD 244 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~-------~~~~~~~~-----------------------~~~~~~~~v~~i~~~~~ 244 (461)
...+++|+.|++|++|+ +...... ......+. ..-.....+++++.+|+
T Consensus 392 ~~cF~TCSsD~TIRlW~-l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWD-LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred ccceeEecCCCcEEEee-cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 33469999999999999 4321000 00000000 00122356899999999
Q ss_pred CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCccccccc
Q 012535 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (461)
Q Consensus 245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (461)
++.|++| .-|.+++|++...+... .++.|...|.|+.|+.- +.++||+++.|+.|++||....-..
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~--------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l--- 539 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTC--------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL--- 539 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhh--------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---
Confidence 9999999 69999999998655443 57889999999999852 2268999999999999998754322
Q ss_pred ccccccccCCCccc--------------------------------ccccc-----ccceeEEEEccCCCEEEEec-CCe
Q 012535 322 SKLFEEQEAPGTRS--------------------------------FFTEI-----IASISDIKFARNGRHILSRD-YMT 363 (461)
Q Consensus 322 ~~~~~~~~~~~~~~--------------------------------~~~~h-----~~~v~~l~~s~~g~~l~s~~-d~~ 363 (461)
+.++.+|....... .|..| ...+..++..|..++++++. |..
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence 33333332221111 11111 24688999999999999865 799
Q ss_pred EEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCC
Q 012535 364 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 443 (461)
Q Consensus 364 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 443 (461)
|+|||+.+ ++..+.|++....-..+ ..+...|.|.|||+.+.|.++.++|..+|++. ...-+|.+.
T Consensus 620 irif~i~s-gKq~k~FKgs~~~eG~l------------IKv~lDPSgiY~atScsdktl~~~Df~sgEcv-A~m~GHsE~ 685 (1080)
T KOG1408|consen 620 IRIFDIES-GKQVKSFKGSRDHEGDL------------IKVILDPSGIYLATSCSDKTLCFVDFVSGECV-AQMTGHSEA 685 (1080)
T ss_pred eEEEeccc-cceeeeecccccCCCce------------EEEEECCCccEEEEeecCCceEEEEeccchhh-hhhcCcchh
Confidence 99999996 99999998755432211 37889999999999999999999999999888 566777777
Q ss_pred Ccccccc
Q 012535 444 MSLFLHF 450 (461)
Q Consensus 444 ~~~~~~~ 450 (461)
+.-+.+.
T Consensus 686 VTG~kF~ 692 (1080)
T KOG1408|consen 686 VTGVKFL 692 (1080)
T ss_pred eeeeeec
Confidence 6654443
No 127
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=179.79 Aligned_cols=247 Identities=17% Similarity=0.266 Sum_probs=189.3
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (461)
++..+.+|. +.|.|++=+|.. -..+++|+.||.|++||+.+..+...+..+ .|.|.
T Consensus 58 Fv~~L~gHr------------dGV~~lakhp~~-ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH--------~G~V~--- 113 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKHPNK-LSTVASGSCDGEVKIWNLSQRECIRTFKAH--------EGLVR--- 113 (433)
T ss_pred chhhccccc------------cccchhhcCcch-hhhhhccccCceEEEEehhhhhhhheeecc--------cCcee---
Confidence 445577887 889999998643 247999999999999999998887777765 34455
Q ss_pred cccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe
Q 012535 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (461)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (461)
++++.. + .+++++.|.+|+.|. +.. .+.+++ .+ ...+..|.-+..+..++++
T Consensus 114 ----Gi~v~~-~-------------~~~tvgdDKtvK~wk-~~~-------~p~~ti-lg-~s~~~gIdh~~~~~~FaTc 165 (433)
T KOG0268|consen 114 ----GICVTQ-T-------------SFFTVGDDKTVKQWK-IDG-------PPLHTI-LG-KSVYLGIDHHRKNSVFATC 165 (433)
T ss_pred ----eEEecc-c-------------ceEEecCCcceeeee-ccC-------Ccceee-ec-ccccccccccccccccccc
Confidence 444444 2 249999999999998 322 133333 12 2456677766677778877
Q ss_pred CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
. -.|.|||........ .+....+.|.++.|+|-...+|++|+.|+.|.|||++++..+.+.+..+
T Consensus 166 G-e~i~IWD~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m------ 230 (433)
T KOG0268|consen 166 G-EQIDIWDEQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM------ 230 (433)
T ss_pred C-ceeeecccccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec------
Confidence 3 248999997544332 4555678899999999987899999999999999999988754333222
Q ss_pred CccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
.-+.++|+|.+-.+++|+ |..++.||++.-..++....+|...+ +++.|||.|
T Consensus 231 -----------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG 284 (433)
T KOG0268|consen 231 -----------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTG 284 (433)
T ss_pred -----------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCc
Confidence 246789999776666776 69999999997788888999998876 599999999
Q ss_pred CEEEEecCCCeEEEEecCCCC
Q 012535 411 GRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 411 ~~l~s~~~dg~i~iw~~~~~~ 431 (461)
+-+++||.|.+|+||.+..+.
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred chhccccccceEEEeecCCCc
Confidence 999999999999999998763
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-23 Score=164.88 Aligned_cols=252 Identities=13% Similarity=0.124 Sum_probs=178.1
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce-eEEeeeecCCCccCCCCCccccccccCcceeec--CCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~g~~~~~~ 189 (461)
+.|+.+... --|.+|++++.|++|+|+.++.+.. ....+...+ .|++. .++|.. -|.+
T Consensus 12 D~IHda~lD--yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh------~GPVw-------qv~wahPk~G~i---- 72 (299)
T KOG1332|consen 12 DMIHDAQLD--YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGH------SGPVW-------KVAWAHPKFGTI---- 72 (299)
T ss_pred hhhhHhhhh--hhcceeeeecCCccEEEEEEcCCCCceeeeEecCC------CCCee-------EEeecccccCcE----
Confidence 567665544 2378999999999999999986543 333333332 56676 566643 4555
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
|++++.||.|.+|. .+.. .......+ ..|...|++++|.|. |-.|+++ +||.|.+.+.+....
T Consensus 73 --------LAScsYDgkVIiWk----e~~g-~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 73 --------LASCSYDGKVIIWK----EENG-RWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred --------eeEeecCceEEEEe----cCCC-chhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 59999999999998 2222 22222222 689999999999998 6677888 899999999986522
Q ss_pred -ceeeeccCCCCCCCCCcceEEEEEeCC---C----------CCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 267 -SFNIVDVKPANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 267 -~~~~~~~~~~~~~~~~~~v~~v~~~p~---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
... .....|.-.|+++.|.|. | .+.|++|+.|..|+||+..+++-. .-++
T Consensus 139 w~t~------ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~--~e~~-------- 202 (299)
T KOG1332|consen 139 WTTS------KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK--LERT-------- 202 (299)
T ss_pred ccch------hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh--hhhh--------
Confidence 211 134568999999999986 2 146999999999999999886321 1223
Q ss_pred ccccccccccceeEEEEccCC----CEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe
Q 012535 333 TRSFFTEIIASISDIKFARNG----RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g----~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
+.+|.+.|+.++|.|.- .+||+++ ||++.||..+...++-+.---+.. ...++.++||
T Consensus 203 ----l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-------------~~~~w~vSWS 265 (299)
T KOG1332|consen 203 ----LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-------------PDVVWRVSWS 265 (299)
T ss_pred ----hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-------------CcceEEEEEe
Confidence 45556899999999953 4788887 699999988743232211111111 1124799999
Q ss_pred cCCCEEEEecCCCeEEEEecCCC
Q 012535 408 GDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
..|++|+.++.|+.|.+|.-...
T Consensus 266 ~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 266 LSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred ccccEEEEecCCcEEEEEEeCCC
Confidence 99999999999999999986643
No 129
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.9e-22 Score=163.98 Aligned_cols=246 Identities=15% Similarity=0.224 Sum_probs=184.4
Q ss_pred cccceEEEEEcCCCCEEEEeec--CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
+.-.|..++|......++.++. |.+||.-++.+.+ +++.|.||.
T Consensus 55 kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk-----------------------ylRYF~GH~----------- 100 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK-----------------------YLRYFPGHK----------- 100 (311)
T ss_pred ccccccEEEEecCCceEEEccCCCCCceEEEEeecCc-----------------------eEEEcCCCC-----------
Confidence 4457888888777777777765 8899999998775 788999999
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|+.|+.+|. +..+++++.|++|++||++..++.........+ ..+|.|+|-..
T Consensus 101 -~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-----------------i~AfDp~GLif----- 155 (311)
T KOG1446|consen 101 -KRVNSLSVSPK--DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-----------------IAAFDPEGLIF----- 155 (311)
T ss_pred -ceEEEEEecCC--CCeEEecccCCeEEeeEecCCCCceEEecCCCc-----------------ceeECCCCcEE-----
Confidence 88999999975 459999999999999999988777666654332 56999999874
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
+++.....|++|| ++..+..+-....-. .+.....+.+.|+|+|+.|+.+ ..+.+.+.|.-.+.....
T Consensus 156 -------A~~~~~~~IkLyD-~Rs~dkgPF~tf~i~--~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t- 224 (311)
T KOG1446|consen 156 -------ALANGSELIKLYD-LRSFDKGPFTTFSIT--DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST- 224 (311)
T ss_pred -------EEecCCCeEEEEE-ecccCCCCceeEccC--CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee-
Confidence 7777777999999 766554333222111 2455778899999999999988 899999999886653322
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
+..+ .......-...|+|++ +++++|+.||+|.+|+++++.. +..+.+. +.+++.++.|+
T Consensus 225 fs~~----~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~----v~~~~~~-----------~~~~~~~~~fn 284 (311)
T KOG1446|consen 225 FSGY----PNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK----VAVLRGP-----------NGGPVSCVRFN 284 (311)
T ss_pred Eeec----cCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE----eeEecCC-----------CCCCccccccC
Confidence 1111 1111122578899999 9999999999999999998875 4445443 22779999999
Q ss_pred cCCCEEEEecCCeEEEEEcc
Q 012535 351 RNGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 351 ~~g~~l~s~~d~~i~vwd~~ 370 (461)
|.-..+++++ ..+.+|=..
T Consensus 285 P~~~mf~sa~-s~l~fw~p~ 303 (311)
T KOG1446|consen 285 PRYAMFVSAS-SNLVFWLPD 303 (311)
T ss_pred CceeeeeecC-ceEEEEecc
Confidence 9866666655 477788654
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.4e-22 Score=163.62 Aligned_cols=249 Identities=15% Similarity=0.183 Sum_probs=181.7
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
+.|..|.|+|. +..|++++.||++++|++....+....... +++. ..+|.++...
T Consensus 14 d~IS~v~f~~~--~~~LLvssWDgslrlYdv~~~~l~~~~~~~---------~plL-------~c~F~d~~~~------- 68 (323)
T KOG1036|consen 14 DGISSVKFSPS--SSDLLVSSWDGSLRLYDVPANSLKLKFKHG---------APLL-------DCAFADESTI------- 68 (323)
T ss_pred hceeeEEEcCc--CCcEEEEeccCcEEEEeccchhhhhheecC---------Ccee-------eeeccCCceE-------
Confidence 77999999954 558899999999999999887554444432 2333 4466665553
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++|+.||.|+.+| +...... .+..|...|.+|.+++....+++| .|++|++||.+......
T Consensus 69 ------~~G~~dg~vr~~D-ln~~~~~--------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--- 130 (323)
T KOG1036|consen 69 ------VTGGLDGQVRRYD-LNTGNED--------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--- 130 (323)
T ss_pred ------EEeccCceEEEEE-ecCCcce--------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---
Confidence 9999999999999 4333221 137899999999999988888888 79999999998522221
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+. ....|.++... + +.|++|+.|..+.+||+++.... .+..... ....+.++++-|
T Consensus 131 -----~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~----~q~reS~----------lkyqtR~v~~~p 187 (323)
T KOG1036|consen 131 -----TFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEP----FQRRESS----------LKYQTRCVALVP 187 (323)
T ss_pred -----ccc-cCceEEEEecc--C-CEEEEeecCceEEEEEcccccch----hhhcccc----------ceeEEEEEEEec
Confidence 122 33477877766 3 67999999999999999986531 1111111 115689999999
Q ss_pred CCCEEEEec-CCeEEEEEccCC---CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 352 NGRHILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
++.-.++++ ||+|.+=.++.. ...-..|+.|..... ..+.+++|.+++|+|--..||||+.||.|.+||+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC------CceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 776566655 899988777641 145567888876442 2344557779999999999999999999999999
Q ss_pred CCCCcc
Q 012535 428 SEGSAE 433 (461)
Q Consensus 428 ~~~~~~ 433 (461)
.+.+..
T Consensus 262 ~~rKrl 267 (323)
T KOG1036|consen 262 FNRKRL 267 (323)
T ss_pred cchhhh
Confidence 988765
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=3.6e-21 Score=166.73 Aligned_cols=291 Identities=12% Similarity=0.201 Sum_probs=212.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
-..-.+.|....|+|.+.-|+.....|.+..|++.++... +....|..++.
T Consensus 196 vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~--------------------k~~~~fek~ek--------- 246 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLV--------------------KRQGIFEKREK--------- 246 (626)
T ss_pred ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceE--------------------EEeeccccccc---------
Confidence 3345678899999996554444445679999998877543 12223444442
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
.-|.|++|.+ || -+++|..+|.|.||+..+.+..+....| .+.|. +++...+|..
T Consensus 247 --k~Vl~v~F~e--ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--------~ggv~-------~L~~lr~Gtl----- 301 (626)
T KOG2106|consen 247 --KFVLCVTFLE--NG-DVITGDSGGNILIWSKGTNRISKQVHAH--------DGGVF-------SLCMLRDGTL----- 301 (626)
T ss_pred --eEEEEEEEcC--CC-CEEeecCCceEEEEeCCCceEEeEeeec--------CCceE-------EEEEecCccE-----
Confidence 4599999984 33 5999999999999999877765554433 56677 7888888886
Q ss_pred cCCCCCccccccCCCcEEeeeeecc----cCccccceee----------------------------Eeeecccccceee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTS----QETNLVAGCR----------------------------RIYAHAHDYHINS 238 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~----~~~~~~~~~~----------------------------~~~~~~~~~~v~~ 238 (461)
++|+.|..|..||-... .+........ .....+|......
T Consensus 302 --------lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg 373 (626)
T KOG2106|consen 302 --------LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG 373 (626)
T ss_pred --------eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence 77999999999982100 0000000000 0112577788889
Q ss_pred EEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 239 i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
++.+|+.+.++++ .|+.+++|+ + .+...... -.+++.|+.|+|.| .+|.|+..|...+.|..+..+
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~~---------~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTKI---------IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc-C-CceeEEEE---------ecCceeEeeccCcc--eEEEeeccceEEEEeccccee
Confidence 9999999999998 899999999 2 33333211 35778999999997 899999999999999998654
Q ss_pred ccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCC
Q 012535 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (461)
+ ++.... .+++.++|+|+|.+||.|+ |+.|+||.+...+..+.....+.+.
T Consensus 441 v-----~~~~d~------------~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs----------- 492 (626)
T KOG2106|consen 441 V-----TIHTDN------------EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS----------- 492 (626)
T ss_pred E-----EEEecC------------CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc-----------
Confidence 2 222222 6799999999999999998 6999999998766666666555542
Q ss_pred CccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
.|+.+.|++|+++|.+-+.|-.|..|..
T Consensus 493 ---~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 493 ---PITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred ---eeEEeeecCCCceEEeccCceEEEEEcc
Confidence 2469999999999999999999999943
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.8e-23 Score=183.89 Aligned_cols=247 Identities=14% Similarity=0.261 Sum_probs=190.8
Q ss_pred ccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCc
Q 012535 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (461)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (461)
+.|++..++.+|. ..|..++.. ++..+++++.||++++|+-..++.........+ .+.+
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~------~g~i 60 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGP------KGFI 60 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCcccccceecccC------ccee
Confidence 4567778899999 668888875 356899999999999999877765553333221 1111
Q ss_pred cccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCE
Q 012535 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (461)
. .++++.+..+. .+++|+.|..+.+|. .... .+... +.+|...|.+++...++.
T Consensus 61 ~------~~i~y~e~~~~-----------~l~~g~~D~~i~v~~-~~~~------~P~~~-LkgH~snVC~ls~~~~~~- 114 (745)
T KOG0301|consen 61 A------NSICYAESDKG-----------RLVVGGMDTTIIVFK-LSQA------EPLYT-LKGHKSNVCSLSIGEDGT- 114 (745)
T ss_pred e------ccceeccccCc-----------ceEeecccceEEEEe-cCCC------Cchhh-hhccccceeeeecCCcCc-
Confidence 1 02344432111 149999999999998 3332 22233 489999999999888887
Q ss_pred EEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
+++| .|.++++|....-. ..+++|...|++++.-|.+ .+++|+.|.+|++|.-.+ . +++|.
T Consensus 115 ~iSgSWD~TakvW~~~~l~----------~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~----l~tf~ 176 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGELV----------YSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT--L----LKTFS 176 (745)
T ss_pred eEecccccceEEecchhhh----------cccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc--h----hhhhc
Confidence 8888 79999999865221 1478999999999999985 899999999999998633 2 56666
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
+|. .-|+++++-+++.+|-++.||.|++|++. ++.+..+.+|...+ ++++.
T Consensus 177 gHt------------D~VRgL~vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~ 227 (745)
T KOG0301|consen 177 GHT------------DCVRGLAVLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNFV---------------YSISM 227 (745)
T ss_pred cch------------hheeeeEEecCCCeEeecCCceEEEEecc--CceeeeeeccceEE---------------EEEEe
Confidence 665 88999999998877777789999999994 89999999999886 48887
Q ss_pred ecCCCEEEEecCCCeEEEEecC
Q 012535 407 SGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
..++..++++++|++++||+..
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC
Confidence 8888999999999999999987
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.3e-24 Score=194.06 Aligned_cols=234 Identities=21% Similarity=0.346 Sum_probs=192.8
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|...|.|+..-..++.+++|+.|..+-+|....-. ....|.+|+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-----------------------~i~S~~~he---------- 70 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-----------------------AITSLTGHE---------- 70 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-----------------------hhheeeccC----------
Confidence 45799999999997789999999999999999976433 344688999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
.+|.+|.|+ .+..+|++|+.+|+|++||++..+..+.+..+..+ +. ++.|+|-+.+.
T Consensus 71 --spIeSl~f~--~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------~~-------sv~f~P~~~~~---- 127 (825)
T KOG0267|consen 71 --SPIESLTFD--TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------IT-------SVDFHPYGEFF---- 127 (825)
T ss_pred --CcceeeecC--cchhhhcccccCCceeeeehhhhhhhhhhhccccC--------cc-------eeeeccceEEe----
Confidence 889999999 44668999999999999999988876665554321 22 78899999984
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+.|+.|..+++|| + ....|...+ .+|...|..+.|+|+|++++++ +|..+++||+..++...
T Consensus 128 --------a~gStdtd~~iwD-~------Rk~Gc~~~~-~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~- 190 (825)
T KOG0267|consen 128 --------ASGSTDTDLKIWD-I------RKKGCSHTY-KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK- 190 (825)
T ss_pred --------ccccccccceehh-h------hccCceeee-cCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc-
Confidence 8999999999999 3 224455555 7799999999999999999999 89999999998665443
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+..|...+.++.|+|.. .+++.|+.|+++++||+++-+. +...+... ..|.+++|
T Consensus 191 -------ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~----I~s~~~~~------------~~v~~~~f 246 (825)
T KOG0267|consen 191 -------EFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEV----ISSGKPET------------DGVRSLAF 246 (825)
T ss_pred -------ccccccccccccccCchh-hhhccCCCCceeeeeccceeEE----eeccCCcc------------CCceeeee
Confidence 577899999999999998 8999999999999999997654 22222222 67999999
Q ss_pred ccCCCEEEEecC
Q 012535 350 ARNGRHILSRDY 361 (461)
Q Consensus 350 s~~g~~l~s~~d 361 (461)
+|+++.+++|..
T Consensus 247 n~~~~~~~~G~q 258 (825)
T KOG0267|consen 247 NPDGKIVLSGEQ 258 (825)
T ss_pred cCCceeeecCch
Confidence 999999999864
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-22 Score=164.78 Aligned_cols=286 Identities=13% Similarity=0.159 Sum_probs=189.2
Q ss_pred cccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccccc
Q 012535 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (461)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (461)
...+.+|. ..|++++|+ .||.+|++++.|++|++|+++.-..+...... ..-...
T Consensus 79 ~~~LKgH~------------~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-----------~nve~d 133 (420)
T KOG2096|consen 79 VSVLKGHK------------KEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKEHRCIR-----------QNVEYD 133 (420)
T ss_pred hhhhhccC------------CceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhhhhHhh-----------ccccCC
Confidence 34578888 779999999 88999999999999999998863221111000 000111
Q ss_pred ccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeE----eeecccccceeeEEeCCCCCEE
Q 012535 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRR----IYAHAHDYHINSISNNSDGETF 248 (461)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l 248 (461)
.|+.+.|.||-+.+ ++.+-....+++|.+....+......... .+...|...+..+-....+.+|
T Consensus 134 hpT~V~FapDc~s~-----------vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSV-----------VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CceEEEECCCcceE-----------EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEE
Confidence 33478999998875 46677778999998333333222111111 1225566777777778889999
Q ss_pred EEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 249 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
+++ .|..|.+|+++ ++.+. .+......-+..+.+|+| +++++++..-.|++|.+--++. .+|..
T Consensus 203 msas~dt~i~lw~lk-Gq~L~--------~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kd-----G~fqe 267 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK-GQLLQ--------SIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKD-----GTFQE 267 (420)
T ss_pred EEecCCCcEEEEecC-Cceee--------eeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccC-----cchhh
Confidence 999 79999999998 44332 233344555678899999 9999999999999998632221 11111
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCC------CCCeeEEee--ccCccccccccccCCCc
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD------SGPVATFQV--HEHLRPKLCDLYENDSI 398 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~ 398 (461)
- .....+.||...|..++|+|+.+.+++.+ ||+++|||++-. .+.+++... |.... .
T Consensus 268 v---~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~---------~-- 333 (420)
T KOG2096|consen 268 V---KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS---------E-- 333 (420)
T ss_pred h---hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC---------C--
Confidence 0 01223567779999999999999999977 799999998631 111222110 11000 0
Q ss_pred cceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcc
Q 012535 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSL 446 (461)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 446 (461)
+ ..++.+|.|+.||.+.. ..|++|..++|+.....-..|...+..
T Consensus 334 -p-~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 334 -P-VRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred -c-eEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceee
Confidence 1 27999999999987553 579999999987765554555554443
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=173.43 Aligned_cols=254 Identities=19% Similarity=0.145 Sum_probs=182.2
Q ss_pred CcEEEEEe-CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCC
Q 012535 126 SALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (461)
Q Consensus 126 ~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 204 (461)
+.+++++. .-..|.+|.+........ .....|.+. +++-+|+|.++ +.|+..
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q--------~~v~Pg~v~-------al~s~n~G~~l------------~ag~i~ 102 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQ--------YIVLPGPVH-------ALASSNLGYFL------------LAGTIS 102 (476)
T ss_pred hhheeeecccCccccccccCchhhhhh--------hccccccee-------eeecCCCceEE------------Eeeccc
Confidence 34677664 455789998865432220 111233444 77888999885 777799
Q ss_pred CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCC-CCCCCCC
Q 012535 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLT 282 (461)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~ 282 (461)
|.|.+|. +..... ... +.+|-..|+++.|+-|+.+|++| .||.|.+|++...-........+| ..+..|.
T Consensus 103 g~lYlWe-lssG~L------L~v-~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 103 GNLYLWE-LSSGIL------LNV-LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred CcEEEEE-eccccH------HHH-HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 9999999 544332 222 38899999999999999999999 899999998753322222112233 4678899
Q ss_pred cceEEEEEeCCCC-CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-
Q 012535 283 EVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (461)
Q Consensus 283 ~~v~~v~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~- 360 (461)
-+|+.+...+.+. ..|++++.|.++++||+..+.+ +.++.-+ ..+.+++.+|-++.++.|+
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L----Llti~fp-------------~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL----LLTITFP-------------SSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEecccee----eEEEecC-------------CcceeEEEcccccEEEecCC
Confidence 9999998877532 5899999999999999999976 3443333 5799999999999999987
Q ss_pred CCeEEEEEccCC---------------CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 361 YMTLKLWDINMD---------------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 361 d~~i~vwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
+|.|.+.++..- +..+..+.+|.+. ..|++++.+.||.+|++|+.||.+.||
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-------------~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-------------SAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCC-------------cceeEEEEecCccEEEeeCCCCCEEEE
Confidence 599999887541 1223444555541 124699999999999999999999999
Q ss_pred ecCCCCccceeeccCCCCCc
Q 012535 426 GCSEGSAESTTLEASKNPMS 445 (461)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~ 445 (461)
|+.+.++. .++.....++.
T Consensus 305 di~S~Q~i-Rtl~~~kgpVt 323 (476)
T KOG0646|consen 305 DIYSKQCI-RTLQTSKGPVT 323 (476)
T ss_pred ecchHHHH-HHHhhhccccc
Confidence 99988765 34433334433
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.1e-21 Score=171.11 Aligned_cols=348 Identities=13% Similarity=0.132 Sum_probs=223.2
Q ss_pred cCCceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccc
Q 012535 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (461)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (461)
....+|++..... .. ..-...+.|++++.+|.+..++.|+.||.+..++...+.. .
T Consensus 90 g~i~EwDl~~lk~--~~-~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------------------~ 145 (691)
T KOG2048|consen 90 GSITEWDLHTLKQ--KY-NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------------------T 145 (691)
T ss_pred ceEEEEecccCce--eE-EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------------------E
Confidence 4456787765311 11 1224568999999999999999999999777777665432 2
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (461)
+...|.-.+ ++|.++.|. +++..++.|+.||.|++||+..+........+...........++
T Consensus 146 ~~r~l~rq~------------sRvLslsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW--- 208 (691)
T KOG2048|consen 146 YKRSLMRQK------------SRVLSLSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW--- 208 (691)
T ss_pred EEeeccccc------------ceEEEEEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE---
Confidence 444454444 789999999 567789999999999999999887666444332221111122333
Q ss_pred cccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe
Q 012535 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (461)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (461)
++.+..++.. ++|...|.|++|| - .. ....+.+ ..|...|.+++..++++.++++
T Consensus 209 ----Sv~~Lrd~tI-------------~sgDS~G~V~FWd-~---~~---gTLiqS~-~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 209 ----SVLFLRDSTI-------------ASGDSAGTVTFWD-S---IF---GTLIQSH-SCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ----EEEEeecCcE-------------EEecCCceEEEEc-c---cC---cchhhhh-hhhhcceeEEEEcCCCCeEEEc
Confidence 5556656654 9999999999999 2 22 2222222 6788999999999998888887
Q ss_pred -CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccc-----------
Q 012535 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD----------- 319 (461)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~----------- 319 (461)
-|+.|..|...+.+...... .....|...|.+++..++ .+++|+.|..+.+-..+......
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~----~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~ 336 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVIN----SRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASD 336 (691)
T ss_pred cCCCceEEEEecCCccceeee----ccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccc
Confidence 79999999887665432211 234558888999998864 78888888887766544311000
Q ss_pred -------ccccccc-ccc---------------CCCccc-cccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCC
Q 012535 320 -------THSKLFE-EQE---------------APGTRS-FFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 375 (461)
Q Consensus 320 -------~~~~~~~-~~~---------------~~~~~~-~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~ 375 (461)
..+..+- .|. .+.... .+..-...|.+.+.||+|++++.+.-..++||.++... .
T Consensus 337 ~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~ 415 (691)
T KOG2048|consen 337 RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-N 415 (691)
T ss_pred eeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-c
Confidence 0000000 000 000000 01111246899999999999999886778888876422 1
Q ss_pred eeEE-------------------------------------eeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 376 VATF-------------------------------------QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 376 ~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
+... +........+..+........|..+..+++|++||+.+.
T Consensus 416 vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t 495 (691)
T KOG2048|consen 416 VKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST 495 (691)
T ss_pred eeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec
Confidence 1110 000000001111111223335568999999999999999
Q ss_pred CCeEEEEecCCCCcc
Q 012535 419 SNLFRVFGCSEGSAE 433 (461)
Q Consensus 419 dg~i~iw~~~~~~~~ 433 (461)
+|.|.+|++++++..
T Consensus 496 ~g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 496 RGQIFVYNLETLESH 510 (691)
T ss_pred cceEEEEEcccceee
Confidence 999999999987543
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=4.3e-21 Score=166.29 Aligned_cols=332 Identities=14% Similarity=0.120 Sum_probs=214.4
Q ss_pred CcccccccccceEEEEEcCCCCEEEEeecCC--------cEEEEEcCCCCCCCCcccccccccccccCCccccccccccC
Q 012535 27 TAGEEVQEVDIISAIEFDKSGDHLATGDRGG--------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS 98 (461)
Q Consensus 27 ~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (461)
......+|++.|.||+.+||--.+|+|-..| .++|||..+-. .+..+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-----------------------TL~V~g~ 152 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----------------------TLHVIGF 152 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-----------------------eeeeecc
Confidence 3334678999999999999988888775544 59999965433 1222333
Q ss_pred CCcchhhccccccccceEEEEEeecCCCcEEEEE--eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCc
Q 012535 99 HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (461)
Q Consensus 99 h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (461)
.+ ..|.|++|++...|.+++.- +.+..+.+||...+......... +..+. .
T Consensus 153 f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s--------ne~v~-------~ 205 (626)
T KOG2106|consen 153 FD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS--------NEVVF-------L 205 (626)
T ss_pred cc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec--------cceEE-------E
Confidence 33 66999999987777777665 57778999999865432221110 11122 5
Q ss_pred ceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCe
Q 012535 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 255 (461)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~ 255 (461)
..|+|.+..+ +.....+.+.+|+ .+.....+....+.......|.|++|.++|.. ++| ++|.
T Consensus 206 a~FHPtd~nl------------iit~Gk~H~~Fw~----~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~ 268 (626)
T KOG2106|consen 206 ATFHPTDPNL------------IITCGKGHLYFWT----LRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGN 268 (626)
T ss_pred EEeccCCCcE------------EEEeCCceEEEEE----ccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCce
Confidence 6899999885 7778889999998 33333344444443333478999999999975 567 8999
Q ss_pred EEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCC---
Q 012535 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG--- 332 (461)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--- 332 (461)
|.||+..+.+...+ ...|.+.|.+++.-.+| .|++|+.|+.|..||-.-.+. +..+.++..+
T Consensus 269 i~Iw~~~~~~~~k~--------~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~-----r~~elPe~~G~iR 333 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQ--------VHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKL-----RETELPEQFGPIR 333 (626)
T ss_pred EEEEeCCCceEEeE--------eeecCCceEEEEEecCc--cEeecCccceEEecccccccc-----ccccCchhcCCee
Confidence 99999875443332 23799999999999998 455699999999999322211 1111111100
Q ss_pred --------------------------ccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccC------CCCCeeEE
Q 012535 333 --------------------------TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM------DSGPVATF 379 (461)
Q Consensus 333 --------------------------~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~------~~~~~~~~ 379 (461)
-.....+|......++.+|+...+++++ |+.+++|+-.. ...+....
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~ 413 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECA 413 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEe
Confidence 0112246777888889998877777755 69999998221 00111111
Q ss_pred eeccCccccc---------------cc-cccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCC
Q 012535 380 QVHEHLRPKL---------------CD-LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (461)
Q Consensus 380 ~~~~~~~~~~---------------~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 441 (461)
..|...+-.+ .. ..+.+ -..+..++|+|+|.+||.|+.|+.|+||.+..+......+..+.
T Consensus 414 ~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 414 DFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred eccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 1121110000 00 00111 22345899999999999999999999999998765555554443
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=8.5e-22 Score=176.89 Aligned_cols=309 Identities=15% Similarity=0.128 Sum_probs=209.1
Q ss_pred cccccccceEEEEEcCCCC---EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhc
Q 012535 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~---~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (461)
...+|.++|+|+.|-|+.+ ++++|+.||.|++|.+..... ..+..+++|.
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~---------------------~~i~~~~g~~------ 101 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL---------------------IKIYTIQGHC------ 101 (764)
T ss_pred eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe---------------------EEEEeecCcc------
Confidence 3568999999999999877 899999999999999984432 2566777887
Q ss_pred cccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeec-CCCc
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGC 185 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~g~~ 185 (461)
+.++++. .......+.+.|+++.+||.+..+.......... .....|.+++..+ ++.+
T Consensus 102 --------~~~~cv~--a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~-----------~k~~ipLcL~~~~~~~~~ 160 (764)
T KOG1063|consen 102 --------KECVCVV--ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFE-----------IKEAIPLCLAALKNNKTF 160 (764)
T ss_pred --------eeEEEEE--eeeeEEEeeccCceEEEeecCCCceeeehheehh-----------hhhHhhHHHhhhccCCcE
Confidence 6667765 2222222337999999999966552222222111 0112233666666 3444
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC---EEEEe-CCCeEEEEEc
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE---TFISA-DDLRINLWNL 261 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~l~~~-~d~~i~iwd~ 261 (461)
+ ++.|+.+..|.+|. ... ........ +.||.+.|.+++|...+. +|+++ .|..|++|.+
T Consensus 161 l-----------la~Ggs~~~v~~~s----~~~-d~f~~v~e-l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i 223 (764)
T KOG1063|consen 161 L-----------LACGGSKFVVDLYS----SSA-DSFARVAE-LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRI 223 (764)
T ss_pred E-----------EEecCcceEEEEec----cCC-cceeEEEE-eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEE
Confidence 3 56777778888776 221 12222223 489999999999987644 56667 7999999987
Q ss_pred cCCCCc-----------------eee---eccC---CCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccc
Q 012535 262 EISNQS-----------------FNI---VDVK---PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (461)
Q Consensus 262 ~~~~~~-----------------~~~---~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 318 (461)
.-.... +.+ +..+ ..-+.||.+.|+++.|+|.+ ..|++++.|.++.+|......-+
T Consensus 224 ~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGi 302 (764)
T KOG1063|consen 224 VLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGI 302 (764)
T ss_pred EecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccce
Confidence 633300 000 0000 02346899999999999998 89999999999999987665322
Q ss_pred cccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCC--CCeeEEeeccCccccccccccC
Q 012535 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYEN 395 (461)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 395 (461)
+...-.+-. ..+......+..|+|++..+++-+. |..++|...... .+...+.+|...+
T Consensus 303 Wv~~vRlGe---------~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V--------- 364 (764)
T KOG1063|consen 303 WVDVVRLGE---------VGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV--------- 364 (764)
T ss_pred EEEEEEeec---------ccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc---------
Confidence 211111111 0112256889999999999988665 999999943211 2344566777665
Q ss_pred CCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 396 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 396 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
.+++|+|.|.+|++.|.|.+-|+|-.-
T Consensus 365 ------~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 365 ------KDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred ------eeeeecCCCCEEEEeccccceeeeccc
Confidence 499999999999999999999998765
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=166.66 Aligned_cols=167 Identities=19% Similarity=0.246 Sum_probs=134.8
Q ss_pred cccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeE
Q 012535 230 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 307 (461)
.+|...=..++|+|- ...|++| .-+.|++|...++.-.+ ....+.+|...|..++|+|....+|++|+-||+|
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCceE
Confidence 788888889999995 2347788 58899999988754332 2235777999999999999887899999999999
Q ss_pred EEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccC--CCCCeeEEeeccC
Q 012535 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEH 384 (461)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~--~~~~~~~~~~~~~ 384 (461)
+|||+|.+..... +. .+ .|.+.|+.+.|+.+-.+||+|+| |+++|||++. .++++..|+.|..
T Consensus 283 rIWDiRs~~~~~~-~~-~k------------Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 283 RIWDIRSGPKKAA-VS-TK------------AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEEecCCCccce-eE-ee------------ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 9999998843110 11 13 34488999999988779999886 9999999985 3688999999998
Q ss_pred ccccccccccCCCccceeeEEEecC-CCEEEEecCCCeEEEEecCCC
Q 012535 385 LRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~ 430 (461)
++ +++.|+|. ...|++++.|..|.|||+.-.
T Consensus 349 pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 349 PI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred Ce---------------eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 86 59999996 457888999999999999754
No 140
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=161.30 Aligned_cols=195 Identities=18% Similarity=0.324 Sum_probs=141.9
Q ss_pred CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCc
Q 012535 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (461)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 127 (461)
..+|++..+|.|+|||..+++ ++..|.++. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----------------------hhheecCCC------------CcccceEEecCCCCC
Confidence 579999999999999998865 567888888 779999998533466
Q ss_pred EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcE
Q 012535 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (461)
Q Consensus 128 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 207 (461)
.+.+++.||+|++||++....+..+...
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~---------------------------------------------------- 113 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWT---------------------------------------------------- 113 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheecc----------------------------------------------------
Confidence 8999999999999999865433322211
Q ss_pred EeeeeecccCccccceeeEeeecccc-cceeeEEeCCCCCEEEEe-----CCCeEEEEEccCCCCceeeeccCCCCCCCC
Q 012535 208 RLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (461)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (461)
++. .+..+++.+..++.+++| ++-.|.+||++..++.+.. -.+.|
T Consensus 114 -----------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eSH 164 (376)
T KOG1188|consen 114 -----------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNESH 164 (376)
T ss_pred -----------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhhc
Confidence 111 234455555566666665 4788999999987775432 25679
Q ss_pred CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC--CEEEEe
Q 012535 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSR 359 (461)
Q Consensus 282 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g--~~l~s~ 359 (461)
.+.|+++.|+|..+++|++|+.||.|.|||+......+..+.++.. ...|..+.|..++ +.....
T Consensus 165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~-------------~sSI~~igw~~~~ykrI~clT 231 (376)
T KOG1188|consen 165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH-------------GSSIHLIGWLSKKYKRIMCLT 231 (376)
T ss_pred cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc-------------cceeeeeeeecCCcceEEEEE
Confidence 9999999999999999999999999999999876433222233222 2568888888776 433334
Q ss_pred cCCeEEEEEccC
Q 012535 360 DYMTLKLWDINM 371 (461)
Q Consensus 360 ~d~~i~vwd~~~ 371 (461)
...+..+|+++.
T Consensus 232 H~Etf~~~ele~ 243 (376)
T KOG1188|consen 232 HMETFAIYELED 243 (376)
T ss_pred ccCceeEEEccC
Confidence 457888888764
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3e-21 Score=156.27 Aligned_cols=219 Identities=13% Similarity=0.192 Sum_probs=155.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce--------eEEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--------KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
+.|+++...+ ..|+++++|+.||.|.+||++...- +.... -..++...+.-.|. ++.|-|-..
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~~Hky~is-------s~~WyP~Dt 114 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHENGHKYAIS-------SAIWYPIDT 114 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCccceeeee-------eeEEeeecC
Confidence 7799999987 4589999999999999999985321 00000 00111111111122 444544333
Q ss_pred cccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC---CCEEEEe-CCCeEEEEE
Q 012535 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWN 260 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~d~~i~iwd 260 (461)
- ++.+++.|..+++|| ........ . -.-.+.|.+-+++|- ..++|+| .+-.|++.|
T Consensus 115 G-----------mFtssSFDhtlKVWD-tnTlQ~a~------~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 115 G-----------MFTSSSFDHTLKVWD-TNTLQEAV------D--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred c-----------eeecccccceEEEee-cccceeeE------E--eecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 3 368999999999999 33222211 1 133466777777775 3466777 799999999
Q ss_pred ccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccC--CCcccccc
Q 012535 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTRSFFT 338 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 338 (461)
+..+.... .+.+|.+.|.++.|+|..+..|++|+.||.|++||++...-| ...++.|+. +.....-.
T Consensus 175 i~SGs~sH--------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 175 IASGSFSH--------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred ccCCccee--------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccc
Confidence 99765543 589999999999999998788999999999999999986443 566666652 22222456
Q ss_pred ccccceeEEEEccCCCEEEE-ecCCeEEEEEccC
Q 012535 339 EIIASISDIKFARNGRHILS-RDYMTLKLWDINM 371 (461)
Q Consensus 339 ~h~~~v~~l~~s~~g~~l~s-~~d~~i~vwd~~~ 371 (461)
.|.+.|.+++|+.+|.++++ |.|..+++|+..+
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 78999999999999999998 4589999999986
No 142
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.1e-21 Score=157.64 Aligned_cols=251 Identities=12% Similarity=0.210 Sum_probs=185.8
Q ss_pred EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCcE
Q 012535 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (461)
Q Consensus 49 ~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~ 128 (461)
.|++|+....|.-+++.-... ...-...|.+...-.+..|. .+|++++.+ +.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~-----------~~~~s~~~~l~~lF~~~aH~------------~sitavAVs----~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK-----------GCTDSVKPTLKPLFAFSAHA------------GSITALAVS----GPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc-----------ccccccceeeeccccccccc------------cceeEEEec----cee
Confidence 367888888877777653220 01111224444555678888 889999997 779
Q ss_pred EEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEE
Q 012535 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (461)
Q Consensus 129 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 208 (461)
+++|+.|-+|+|||+........
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999876532110
Q ss_pred eeeeecccCccccceeeEeeecccccceeeEEeCCCCC--EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcce
Q 012535 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (461)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (461)
+..|.+.|+++.|.+.-. .|++| +||.|.+|+....... .++.+|.+.|
T Consensus 79 --------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~--------~slK~H~~~V 130 (362)
T KOG0294|consen 79 --------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL--------KSLKAHKGQV 130 (362)
T ss_pred --------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--------eeeccccccc
Confidence 145778899999988854 78888 8999999999866333 2678899999
Q ss_pred EEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEE
Q 012535 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (461)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~ 365 (461)
+.++.+|.+ ++.++.+.|+.+++||+-+++.. ..+... ..-+.+.|+|.|.+++.+..+.|-
T Consensus 131 t~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a----~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i~ 192 (362)
T KOG0294|consen 131 TDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVA----FVLNLK-------------NKATLVSWSPQGDHFVVSGRNKID 192 (362)
T ss_pred ceeEecCCC-ceEEEEcCCceeeeehhhcCccc----eeeccC-------------CcceeeEEcCCCCEEEEEeccEEE
Confidence 999999999 99999999999999999888641 222222 123459999999999988888999
Q ss_pred EEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCc
Q 012535 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMS 445 (461)
Q Consensus 366 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 445 (461)
+|.+.+ ......+..... +.++.|. ++..|++|++|+.|++||.++.. ....+.+|+..++
T Consensus 193 i~q~d~-A~v~~~i~~~~r----------------~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~-~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 193 IYQLDN-ASVFREIENPKR----------------ILCATFL-DGSELLVGGDNEWISLKDTDSDT-PLTEFLAHENRVK 253 (362)
T ss_pred EEeccc-HhHhhhhhcccc----------------ceeeeec-CCceEEEecCCceEEEeccCCCc-cceeeecchhhee
Confidence 999985 455444433311 1255555 67789999999999999999854 4478888888877
Q ss_pred ccc
Q 012535 446 LFL 448 (461)
Q Consensus 446 ~~~ 448 (461)
...
T Consensus 254 ~i~ 256 (362)
T KOG0294|consen 254 DIA 256 (362)
T ss_pred eeE
Confidence 654
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=178.13 Aligned_cols=212 Identities=15% Similarity=0.164 Sum_probs=161.7
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCceeeecc
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
+++++++..|.|.+|| +... ...+.... +..|...++++.|++. ..+|++| .||.|++||++..+...
T Consensus 101 NlIAT~s~nG~i~vWd-lnk~---~rnk~l~~-f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~----- 170 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWD-LNKS---IRNKLLTV-FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS----- 170 (839)
T ss_pred hhheeecCCCcEEEEe-cCcc---ccchhhhH-hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc-----
Confidence 4479999999999999 5332 11222223 3789999999999987 5677788 79999999999655443
Q ss_pred CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 274 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
++.+..+.|+.|.|+|..+..|+++...|.+++||+|....+ ...+.. |.++|.++.|+|++
T Consensus 171 ---t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~---~~k~~A------------H~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 171 ---TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC---EKKLTA------------HNGPVLCLNWHPNR 232 (839)
T ss_pred ---cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH---HHHhhc------------ccCceEEEeecCCC
Confidence 456688999999999987799999999999999999987654 344444 44999999999999
Q ss_pred CEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE-EEEec--CCCeEEEEecCC
Q 012535 354 RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGS--YSNLFRVFGCSE 429 (461)
Q Consensus 354 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~--~dg~i~iw~~~~ 429 (461)
.+||+|+ |++|+|||+.. .+.......+.. .+|..+.|-|+..+ |++++ .|-.|+|||++.
T Consensus 233 ~~lATGGRDK~vkiWd~t~-~~~~~~~tInTi--------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 233 EWLATGGRDKMVKIWDMTD-SRAKPKHTINTI--------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred ceeeecCCCccEEEEeccC-CCccceeEEeec--------------ceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 9999987 79999999984 333333333322 22358999999764 66655 588999999998
Q ss_pred CCccceeeccCCCCCcccccc
Q 012535 430 GSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~ 450 (461)
.-....++..|++.+.-.-..
T Consensus 298 PYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 298 PYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred ccccceeeeccCccccceecc
Confidence 877778888888766544433
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=4.3e-22 Score=172.31 Aligned_cols=252 Identities=13% Similarity=0.178 Sum_probs=185.6
Q ss_pred ccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeE-EeeeecCCCccC-CCCCccccccccCcceeecCC
Q 012535 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAA-GNGPIFGSHVSAIPKSYMANG 183 (461)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~g 183 (461)
+.++.|.+-|.++..+ ...+++++|+. |.|+|||+....-+. +.... .+ ...-+. +....|||
T Consensus 413 ~~tL~HGEvVcAvtIS--~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd-----cl~rdnyiR-------SckL~pdg 477 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTIS--NPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD-----CLNRDNYIR-------SCKLLPDG 477 (705)
T ss_pred hhhhccCcEEEEEEec--CCcceeEecCC-CeEEEeeccCCCCCCcccccc-----ccCccccee-------eeEecCCC
Confidence 3444555778888887 45567777665 779999997542111 11110 00 011122 45778899
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEcc
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (461)
+.+ ++|+.-.++.||| +.........+ +....-....++.+||.+..+++ .||.|.|||+.
T Consensus 478 rtL------------ivGGeastlsiWD-LAapTprikae-----ltssapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 478 RTL------------IVGGEASTLSIWD-LAAPTPRIKAE-----LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred ceE------------Eeccccceeeeee-ccCCCcchhhh-----cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 985 9999999999999 54433221111 12223455678899999998888 99999999998
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
+.. .++ .+++|.+.+.||.++++| ..|.+|+.|.+||.||++.++...+ +.|. +
T Consensus 540 nq~-~Vr-------qfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqq--hdF~---------------S 593 (705)
T KOG0639|consen 540 NQT-LVR-------QFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQ--HDFS---------------S 593 (705)
T ss_pred cce-eee-------cccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhh--hhhh---------------h
Confidence 543 332 689999999999999999 8999999999999999999865321 1221 5
Q ss_pred ceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe
Q 012535 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (461)
.|.++..+|++.+|+.|-. +.+.|-... +.....+.-|+..+ +++.|.+-|+++++.+.|+.
T Consensus 594 QIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnl 656 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNL 656 (705)
T ss_pred hheecccCCCccceeeecccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhh
Confidence 6999999999999999975 888887775 45556677777765 59999999999999999999
Q ss_pred EEEEecCCCCcc
Q 012535 422 FRVFGCSEGSAE 433 (461)
Q Consensus 422 i~iw~~~~~~~~ 433 (461)
+..|...-|..+
T Consensus 657 LnawrtPyGasi 668 (705)
T KOG0639|consen 657 LNAWRTPYGASI 668 (705)
T ss_pred hhhccCccccce
Confidence 999999887655
No 145
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=7.9e-21 Score=151.72 Aligned_cols=273 Identities=15% Similarity=0.208 Sum_probs=197.9
Q ss_pred cccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccccccc
Q 012535 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (461)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (461)
.++||+ .+++.|.++ .+|.+|.+++.|.+..+|--.+|+..-....| .|.|+
T Consensus 5 ~l~GHE------------RplTqiKyN--~eGDLlFscaKD~~~~vw~s~nGerlGty~GH--------tGavW------ 56 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKYN--REGDLLFSCAKDSTPTVWYSLNGERLGTYDGH--------TGAVW------ 56 (327)
T ss_pred ccccCc------------cccceEEec--CCCcEEEEecCCCCceEEEecCCceeeeecCC--------CceEE------
Confidence 478898 889999999 77889999999999999998888777776665 56666
Q ss_pred CcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe---
Q 012535 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--- 251 (461)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--- 251 (461)
++...-+.+. +++|+.|.++++|| +.. .++...+ .....|..+.|+++|++++.+
T Consensus 57 -~~Did~~s~~------------liTGSAD~t~kLWD-v~t------Gk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 57 -CCDIDWDSKH------------LITGSADQTAKLWD-VET------GKQLATW--KTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred -EEEecCCcce------------eeeccccceeEEEE-cCC------CcEEEEe--ecCCeeEEEeeccCCcEEEEEehh
Confidence 5555555555 59999999999999 422 2333332 344789999999999988765
Q ss_pred ---CCCeEEEEEccCCCCceeeeccCC-CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 252 ---DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 252 ---~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
..+.|.++|++.......- -.| ..+..+...++.+.|.|.+ ..|++|..||.|.+||++++... +..-+.
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s--~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~---v~s~~~ 188 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDS--EEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL---VDSDEE 188 (327)
T ss_pred hcCcceEEEEEEccCChhhhcc--cCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee---eechhh
Confidence 2578999999843211000 000 1244567889999999999 99999999999999999998642 333333
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
| ...|+.+++++|..++++++ |.+-++||+.+ -+.++++...... .+.++
T Consensus 189 h------------~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~Pv----------------N~aai 239 (327)
T KOG0643|consen 189 H------------SSKINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERPV----------------NTAAI 239 (327)
T ss_pred h------------ccccccccccCCcceEEecccCccceeeeccc-eeeEEEeeecccc----------------cceec
Confidence 3 37899999999999999987 79999999996 7778877754432 38899
Q ss_pred ecCCCEEEEecCCCe--EEEEecCCCC-----------ccceeeccCCCCCcccccccc
Q 012535 407 SGDGGRVATGSYSNL--FRVFGCSEGS-----------AESTTLEASKNPMSLFLHFQE 452 (461)
Q Consensus 407 s~~~~~l~s~~~dg~--i~iw~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 452 (461)
+|....++.|+.... |.-=+.+.|+ ++.-.+++|-.|+.....+|.
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 998777776654322 2222222221 223456778888887776654
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=5.7e-21 Score=165.20 Aligned_cols=259 Identities=13% Similarity=0.161 Sum_probs=184.3
Q ss_pred cceEEEEEeecCCCcEEEEE--eCCCeEEEEEccCC--ceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 113 EKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~--~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..+.++.|. ..+ .|+++ +.|..+++|.-... +...+....... -. +++......+
T Consensus 35 pg~~s~~w~--~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~--------~~-------Cv~~~s~S~y--- 93 (673)
T KOG4378|consen 35 PGDFSFNWQ--RRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN--------AF-------CVACASQSLY--- 93 (673)
T ss_pred Ccceeeecc--ccc-eEEEeecCCceeEEEecccCCCCccceeeccccch--------HH-------HHhhhhccee---
Confidence 559999997 333 35544 58899999975433 222222211110 00 2232223343
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
+++|+..+.|+||| +. .+....++.+|...|+++.++....+||++ ..|.|.+..+.+....
T Consensus 94 ---------~~sgG~~~~Vkiwd-l~-------~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 94 ---------EISGGQSGCVKIWD-LR-------AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred ---------eeccCcCceeeehh-hH-------HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 59999999999999 43 222233458999999999999999999999 7899999999876544
Q ss_pred eeeeccCCCCCCC-CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 268 FNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
.. +.- ....|+-+.|+|....+|.+++.+|.|.+||+..... +..+ ...|..+...
T Consensus 157 t~--------f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~-----------~~~HsAP~~g 213 (673)
T KOG4378|consen 157 TT--------FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHA-----------SEAHSAPCRG 213 (673)
T ss_pred cc--------eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccch-----------hhhccCCcCc
Confidence 32 222 2455678999998866888999999999999987654 2221 2335588999
Q ss_pred EEEccCCCE-EEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 347 IKFARNGRH-ILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 347 l~~s~~g~~-l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
++|+|.... |++ |-|..|.+||+.. .....++...... ..++|+++|.+|+.|+..|.|..
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred ceecCCccceEEEecccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEE
Confidence 999996654 445 4589999999985 6666666554333 38999999999999999999999
Q ss_pred EecCCCCccceeeccCCCCCccccc
Q 012535 425 FGCSEGSAESTTLEASKNPMSLFLH 449 (461)
Q Consensus 425 w~~~~~~~~~~~~~~~~~~~~~~~~ 449 (461)
||++..+....+..+|...+....+
T Consensus 277 YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 277 YDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred EecccCCCCceEeeecccceeEEEe
Confidence 9999888777788888877655443
No 147
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=3.4e-21 Score=153.53 Aligned_cols=300 Identities=10% Similarity=0.157 Sum_probs=198.1
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.|.+.|+|+.|..+++ |.+|..-|.|.+|++++.... ..+..+..
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g~----------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFGR----------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc-----------------------hhhhhhcc-----------
Confidence 6889999999998874 899999999999999987632 33442221
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc-
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG- 191 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~- 191 (461)
..|+.+.-.| +..+.+-+.|..+.+|++..+....+.....+. ..++ ..++++.++..+.+..
T Consensus 57 ~~it~lq~~p---~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~ns-----------lgFC--rfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 57 LFITNLQSIP---NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNS-----------LGFC--RFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ceeeceeecC---CcchhhcCCCceEEEEEccCcceEEEeeeeccc-----------cccc--cceeccCCCcchhheec
Confidence 4588887774 358999999999999999987766655433211 0011 1223333333211100
Q ss_pred -CCCCCc--cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CC--EEEEe-CCCeEEEEEccCC
Q 012535 192 -CASNDS--SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GE--TFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 192 -~~~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~--~l~~~-~d~~i~iwd~~~~ 264 (461)
+...+. .--++..-.+++-| .+ ..+..+.+.+..+.-+ +. ++++| ++|.+.+||+.++
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~d----d~-----------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIAD----DS-----------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred CCcccchhhhhccCccceeEccC----ch-----------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 000010 11122222233222 00 1344566777664332 22 34556 7999999999976
Q ss_pred CCceeeeccCC--CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 265 NQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
.....+...-+ .....|..+|.++.|.+.- ..=++|+.+..+..|.+......-..-......+ .
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn------------p 252 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN------------P 252 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEecC------------C
Confidence 44433221111 2345689999999999864 5667888888899998865421101011111111 4
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (461)
.|..+..-||++.+|+++ |++||||+.++ .+++..++.|...++ +++|+|+..++|.++.|++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn---------------~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVN---------------AVAFSPDCELMAAASKDAR 316 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhccee---------------EEEeCCCCchhhhccCCce
Confidence 588999999999999976 79999999997 999999999998764 9999999999999999999
Q ss_pred EEEEec
Q 012535 422 FRVFGC 427 (461)
Q Consensus 422 i~iw~~ 427 (461)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.1e-21 Score=176.02 Aligned_cols=247 Identities=14% Similarity=0.154 Sum_probs=177.9
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc-eeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..-+.|+|. ++|..|++++.||.|++|+..... ....+.... .. ..++...+.
T Consensus 14 ~G~t~i~~d--~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--------~~---------v~~ia~~s~------- 67 (933)
T KOG1274|consen 14 GGLTLICYD--PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--------EL---------VSSIACYSN------- 67 (933)
T ss_pred CceEEEEEc--CCCCEEEEecCCCceEEeecCCcccCCchhhccC--------ce---------eEEEeeccc-------
Confidence 668899998 567799999999999999876442 111111000 00 112222222
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
.|++++.++.|.+|. +...+. ... +...+-++++++|+-+|+++|.| +|-.|++-+........
T Consensus 68 -----~f~~~s~~~tv~~y~-fps~~~---~~i----L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~-- 132 (933)
T KOG1274|consen 68 -----HFLTGSEQNTVLRYK-FPSGEE---DTI----LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK-- 132 (933)
T ss_pred -----ceEEeeccceEEEee-CCCCCc---cce----eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--
Confidence 369999999999998 332222 111 23445789999999999999999 89999999988766554
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.+.+|.++|.++.|+|.+ .+||+.+-||.|++||+.++.+. .++.+-... .- ......+..++|+
T Consensus 133 ------~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~v~k~---n~-~~~s~i~~~~aW~ 197 (933)
T KOG1274|consen 133 ------VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTGVDKD---NE-FILSRICTRLAWH 197 (933)
T ss_pred ------eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhcccCCcc---cc-ccccceeeeeeec
Confidence 478899999999999999 99999999999999999988652 333221100 00 0002568899999
Q ss_pred cCC-CEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 351 RNG-RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 351 ~~g-~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
|+| ++++.+.|+.|.+|+... ......+........ +..++|+|.|+|||+++.||.|.|||+++
T Consensus 198 Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 198 PKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCCeEEeeccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 985 555557899999999985 677666654332210 24899999999999999999999999995
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6e-21 Score=162.89 Aligned_cols=267 Identities=16% Similarity=0.217 Sum_probs=182.6
Q ss_pred EEEEEcC-------CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 39 SAIEFDK-------SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 39 ~~~~~s~-------~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
.|++|.. .|+|+|.|+.|..|.|||+.-...+-.+...-...++ ......+.-..-.+|+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk--~~~k~~k~~~~~~gHT----------- 243 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASK--KKKKKGKRSNSASGHT----------- 243 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhh--hhhhhcccccccccch-----------
Confidence 5666643 3689999999999999998744322100000000000 0000000111234576
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
+.|..++|+- ...+.|++|+.|.+|++||+.++++....
T Consensus 244 -davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s~--------------------------------------- 282 (463)
T KOG0270|consen 244 -DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSSI--------------------------------------- 282 (463)
T ss_pred -HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCcceeh---------------------------------------
Confidence 7888999984 23568999999999999999998765432
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
..|...|.++.|+|. ..+|++| .|+++.+.|++.....-.
T Consensus 283 --------------------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 283 --------------------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred --------------------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence 346688999999987 6778888 799999999995333221
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+ ...+.|..++|.|..+..++++..||+++-+|+|+... .+.++..|. ++|.++++
T Consensus 325 ~w--------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~---~vwt~~AHd------------~~ISgl~~ 381 (463)
T KOG0270|consen 325 EW--------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK---PVWTLKAHD------------DEISGLSV 381 (463)
T ss_pred eE--------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC---ceeEEEecc------------CCcceEEe
Confidence 11 14677999999999888999999999999999998752 367777776 78999999
Q ss_pred ccCCC-EEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-EEEEecCCCeEEEEe
Q 012535 350 ARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFG 426 (461)
Q Consensus 350 s~~g~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~ 426 (461)
++.-. +|++++ ++.|++|++.. ..+ .....|.-....+ .+.++.|+-. +|+.|+..+.++|||
T Consensus 382 n~~~p~~l~t~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 382 NIQTPGLLSTASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cCCCCcceeeccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEee
Confidence 98654 455554 79999999974 222 2233343322222 2666777644 678888889999999
Q ss_pred cCCCCccc
Q 012535 427 CSEGSAES 434 (461)
Q Consensus 427 ~~~~~~~~ 434 (461)
+.+.....
T Consensus 448 ~~~~~~V~ 455 (463)
T KOG0270|consen 448 IFTNSPVR 455 (463)
T ss_pred cccChhHH
Confidence 98775443
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.1e-20 Score=161.86 Aligned_cols=262 Identities=16% Similarity=0.261 Sum_probs=182.4
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc--eeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+|++++|+|..+-..+++|..-|.|-+||+.+.+ ...+...+.+ .+.|. ++.|+|...-
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h------s~~Vs-------~l~F~P~n~s---- 248 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH------SGPVS-------GLKFSPANTS---- 248 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC------Ccccc-------ceEecCCChh----
Confidence 388999999998777899999999999999996322 1122222211 33344 6777776543
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
.+++.+.||+|++-| +..... ...... ......+.++.|+.+...++.+ .-|...+||+++.+..+
T Consensus 249 -------~i~ssSyDGtiR~~D-~~~~i~---e~v~s~--~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 249 -------QIYSSSYDGTIRLQD-FEGNIS---EEVLSL--DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred -------heeeeccCceeeeee-ecchhh---HHHhhc--CccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 368999999999888 432211 111110 1233556778888887777777 66699999999887655
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
. .+.-|...|++++++|-.+.+||+++.|++.+|||+|.-.....+ ......|...|.+..
T Consensus 316 ~-------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp------------~lst~~HrrsV~sAy 376 (498)
T KOG4328|consen 316 E-------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP------------FLSTLPHRRSVNSAY 376 (498)
T ss_pred h-------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc------------ceecccccceeeeeE
Confidence 4 244477799999999998899999999999999999875432110 111234557899999
Q ss_pred EccCCCEEEE-ecCCeEEEEEcc---CCCCCeeEEeeccCcc-ccccccccCCCccceeeEEEecCCCEEEEecCCCeEE
Q 012535 349 FARNGRHILS-RDYMTLKLWDIN---MDSGPVATFQVHEHLR-PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (461)
Q Consensus 349 ~s~~g~~l~s-~~d~~i~vwd~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (461)
|||+|-.|++ +-|+.|+|||.. ....+..++. |.... +.+ ..+...|.|+..++++|-.-..|-
T Consensus 377 FSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~Rwl----------T~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 377 FSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWL----------TPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred EcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccc----------cchhheeCCCccEEEEeccCccee
Confidence 9997766776 457999999984 2134444443 33221 111 124688999999999999999999
Q ss_pred EEecCCCCcc
Q 012535 424 VFGCSEGSAE 433 (461)
Q Consensus 424 iw~~~~~~~~ 433 (461)
|+|-..++.+
T Consensus 446 v~~~~~~q~v 455 (498)
T KOG4328|consen 446 VFDGNGGQMV 455 (498)
T ss_pred EEcCCCCEEe
Confidence 9999877633
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.3e-19 Score=162.44 Aligned_cols=255 Identities=8% Similarity=0.068 Sum_probs=165.9
Q ss_pred ccceEEEEEcCCCCEE-EEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 35 VDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
...+.+++|+|+|+.+ ++++.++.|++||..+++. ...+..+.
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------- 73 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----------------------IGTLPSGP------------- 73 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----------------------EEeccCCC-------------
Confidence 3457789999999976 5677889999999887642 12233332
Q ss_pred ceEEEEEeecCCCcEEEEE-eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 114 KINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.+..++|+ ++++.++++ +.|+.|++||+.+++.......... +. .++|+|+|+.+
T Consensus 74 ~~~~~~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------~~-------~~~~~~dg~~l------ 129 (300)
T TIGR03866 74 DPELFALH--PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---------PE-------GMAVSPDGKIV------ 129 (300)
T ss_pred CccEEEEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---------cc-------eEEECCCCCEE------
Confidence 25678888 456666554 5789999999988765544332110 11 67899999985
Q ss_pred CCCCccccccCCC-cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCcee
Q 012535 193 ASNDSSFPPGGVS-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~ 269 (461)
+++..++ .+.+|| .... ...... .....+..++|+|+++.|+.+ .++.|.+||+++.+....
T Consensus 130 ------~~~~~~~~~~~~~d-~~~~------~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~ 194 (300)
T TIGR03866 130 ------VNTSETTNMAHFID-TKTY------EIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK 194 (300)
T ss_pred ------EEEecCCCeEEEEe-CCCC------eEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence 6666554 456667 3211 111111 112345778999999988654 599999999986543322
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeE-EEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
+ ................++|+|++ +.+ ++.+.++.+.+||+++++.. ..+... ..+.+++
T Consensus 195 ~-~~~~~~~~~~~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~~-------------~~~~~~~ 255 (300)
T TIGR03866 195 I-TFEIPGVHPEAVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVL----DYLLVG-------------QRVWQLA 255 (300)
T ss_pred e-eecccccccccCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEE----EEEEeC-------------CCcceEE
Confidence 1 11100011111234578899998 654 44456778999999876642 222111 4588999
Q ss_pred EccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccC
Q 012535 349 FARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 349 ~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
|+|+|++|++++ ++.|++||+.+ ++++..+.....
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~ 292 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAA-LKVIKSIKVGRL 292 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEEcccc
Confidence 999999998863 59999999996 888888876543
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.9e-22 Score=181.81 Aligned_cols=230 Identities=16% Similarity=0.261 Sum_probs=179.1
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.++..- ..++.+++|+.|..+.+|.+..-..+..+..+ .+.|. ++.|+++...+
T Consensus 29 aav~~lk~~--~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~h--------espIe-------Sl~f~~~E~Ll------ 85 (825)
T KOG0267|consen 29 AAVGCLKIR--KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGH--------ESPIE-------SLTFDTSERLL------ 85 (825)
T ss_pred hhhceeeee--ccceeeccCCCceeeccccccCCchhheeecc--------CCcce-------eeecCcchhhh------
Confidence 667777764 44678999999999999998765544433333 33344 77888888875
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++|..+|.|++|| +.. ....+. +.+|...+.++.|+|-+.++++| .|+.+++||.+..+...
T Consensus 86 ------aagsasgtiK~wD-lee------Ak~vrt-Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~--- 148 (825)
T KOG0267|consen 86 ------AAGSASGTIKVWD-LEE------AKIVRT-LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH--- 148 (825)
T ss_pred ------cccccCCceeeee-hhh------hhhhhh-hhccccCcceeeeccceEEeccccccccceehhhhccCcee---
Confidence 9999999999999 432 222333 37999999999999999999998 79999999999554443
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+.+|...+..+.|+|+| ++++.|+.|.+++|||+..++. +..|+.|. +.+..+.|+|
T Consensus 149 -----~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~----~~ef~~~e------------~~v~sle~hp 206 (825)
T KOG0267|consen 149 -----TYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKL----SKEFKSHE------------GKVQSLEFHP 206 (825)
T ss_pred -----eecCCcceeEEEeecCCC-ceeeccCCcceeeeeccccccc----cccccccc------------ccccccccCc
Confidence 466789999999999999 9999999999999999999987 56666665 8899999999
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (461)
..-++++|+ |+++++||+++ -+.+....... .+|.+.+|+|+++.+++|..+.
T Consensus 207 ~e~Lla~Gs~d~tv~f~dlet-fe~I~s~~~~~---------------~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 207 LEVLLAPGSSDRTVRFWDLET-FEVISSGKPET---------------DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred hhhhhccCCCCceeeeeccce-eEEeeccCCcc---------------CCceeeeecCCceeeecCchhh
Confidence 877788776 79999999985 33333222221 2345999999999999887654
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.2e-21 Score=184.14 Aligned_cols=259 Identities=16% Similarity=0.278 Sum_probs=195.1
Q ss_pred ccccccceEEEEEcCCCCE----EEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhc
Q 012535 31 EVQEVDIISAIEFDKSGDH----LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~----l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (461)
.+.-...-+.++|.+.|.. ||.|..||.|.+||...-.. +.+...+..+..|+
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~~~~~la~~~~h~------ 116 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NASEEVLATKSKHT------ 116 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------CcchHHHhhhcccC------
Confidence 3445567889999997765 89999999999999765211 12334667788888
Q ss_pred cccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
+.|..+.|++.. ++.+++|+.||.|.|||+..-+. -+++.+
T Consensus 117 ------G~V~gLDfN~~q-~nlLASGa~~geI~iWDlnn~~t-----------------------------P~~~~~--- 157 (1049)
T KOG0307|consen 117 ------GPVLGLDFNPFQ-GNLLASGADDGEILIWDLNKPET-----------------------------PFTPGS--- 157 (1049)
T ss_pred ------CceeeeeccccC-CceeeccCCCCcEEEeccCCcCC-----------------------------CCCCCC---
Confidence 889999999754 56999999999999999876321 111100
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~ 264 (461)
......|.+++|+.. ...|+++ .+|.+.|||++..
T Consensus 158 -------------------------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 158 -------------------------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred -------------------------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 122367889999876 5667777 7899999999977
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC---eEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
+..+.+ ........+..++|+|+....+++++.|. .|.+||+|.... .++++++| .
T Consensus 195 ~pii~l------s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H------------~ 253 (1049)
T KOG0307|consen 195 KPIIKL------SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGH------------Q 253 (1049)
T ss_pred Cccccc------ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhccc------------c
Confidence 655543 12222345779999999877888888764 699999987542 24444444 4
Q ss_pred cceeEEEEccCC-CEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-EEEEecC
Q 012535 342 ASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSY 418 (461)
Q Consensus 342 ~~v~~l~~s~~g-~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~ 418 (461)
..|.++.|++.+ ++|++++ |+.|.+|+.++ ++.+..+.....+. +.+.|.|... .+++++-
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASF 317 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhhee
Confidence 889999999965 7777755 79999999997 89988887766664 5899999766 8888999
Q ss_pred CCeEEEEecCCCC
Q 012535 419 SNLFRVFGCSEGS 431 (461)
Q Consensus 419 dg~i~iw~~~~~~ 431 (461)
||.|.|+.+.+..
T Consensus 318 dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 318 DGKISIYSLQGTD 330 (1049)
T ss_pred ccceeeeeeecCC
Confidence 9999999998765
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-20 Score=162.62 Aligned_cols=285 Identities=12% Similarity=0.160 Sum_probs=197.5
Q ss_pred CceeeeccccccCCcccccccc--cceEEEEEcCCCCEEEEe--ecCCcEEEEEcCCCCCCCCcccccccccccccCCcc
Q 012535 14 PLEWKFSQVFGERTAGEEVQEV--DIISAIEFDKSGDHLATG--DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (461)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~--~~V~~~~~s~~g~~l~tg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (461)
...|.++-.-.+. +...|+ -.|.++.|+.... |+++ +.|..|++|.-.... |+
T Consensus 14 ~kl~D~s~~~~~~---~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~-------------------~~ 70 (673)
T KOG4378|consen 14 TKLSDFSDLETKS---EYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKT-------------------PE 70 (673)
T ss_pred eEEeecccccCcc---ccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCC-------------------Cc
Confidence 3668887542221 122222 2389999998664 5544 467788999855431 22
Q ss_pred ccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccc
Q 012535 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (461)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (461)
......+.+... .-|.+..+ ..++++|+..+.|+|||++...+.+....|. ..|.
T Consensus 71 Vp~~~k~~gd~~-----------~Cv~~~s~-----S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--------stvt- 125 (673)
T KOG4378|consen 71 VPRVRKLTGDNA-----------FCVACASQ-----SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--------STVT- 125 (673)
T ss_pred cceeeccccchH-----------HHHhhhhc-----ceeeeccCcCceeeehhhHHHHHhhhccCCc--------ceeE-
Confidence 223333333321 22444444 3589999999999999999776666555442 2233
Q ss_pred cccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE
Q 012535 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (461)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (461)
++.+.-...+ +++++..|.|.+-. +.. .... ..+..+....|+-+.|++..+.++
T Consensus 126 ------~v~YN~~Dey------------iAsvs~gGdiiih~-~~t---~~~t---t~f~~~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 126 ------YVDYNNTDEY------------IASVSDGGDIIIHG-TKT---KQKT---TTFTIDSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred ------EEEecCCcce------------eEEeccCCcEEEEe-ccc---Cccc---cceecCCCCeEEEeecccccceee
Confidence 4455555554 59999999999776 222 1111 112233345677899999988776
Q ss_pred Ee--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 250 SA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 250 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
+. ++|.|.+||+......+. -.+.|..+...|+|+|..+.+|++.+.|..|.+||.+..... ..+..
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~-------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y 249 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFH-------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTY 249 (673)
T ss_pred EeeccCCeEEEEeccCCCcccc-------hhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc----ceeee
Confidence 64 799999999985554443 356699999999999998899999999999999999976642 22222
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
. .+...++|+++|.+|++|+. |.|..||++....++.++..|...+ ++++|
T Consensus 250 ~-------------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV---------------t~vaf 301 (673)
T KOG4378|consen 250 S-------------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV---------------TRVAF 301 (673)
T ss_pred c-------------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccce---------------eEEEe
Confidence 2 46899999999999999975 9999999998789999999999876 48888
Q ss_pred ecCC
Q 012535 407 SGDG 410 (461)
Q Consensus 407 s~~~ 410 (461)
-|..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 7765
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=3.2e-20 Score=166.28 Aligned_cols=276 Identities=15% Similarity=0.191 Sum_probs=200.7
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
.|..++|-|||..|+.+..+ .+.|||..++. .+.++++|. +.|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~-----------------------llqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGT-----------------------LLQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcc-----------------------ccccccccc------------ceEE
Confidence 89999999999988877644 79999998876 457899999 8899
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCC
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (461)
+++|+ .||.++++|+.|+.|.+|+-+-.-..+-.. ...+. ++.|.|-...+
T Consensus 58 cVAys--~dGkrFASG~aDK~VI~W~~klEG~LkYSH----------~D~IQ-------CMsFNP~~h~L---------- 108 (1081)
T KOG1538|consen 58 CVAYA--KDGKRFASGSADKSVIIWTSKLEGILKYSH----------NDAIQ-------CMSFNPITHQL---------- 108 (1081)
T ss_pred EEEEc--cCCceeccCCCceeEEEecccccceeeecc----------CCeee-------EeecCchHHHh----------
Confidence 99999 789999999999999999876432222111 11222 77888877764
Q ss_pred ccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCC
Q 012535 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (461)
++|+-+ ..-+|. .+..... .......+.+.+|..||++|+.| .+|+|.+-+.. +++...+-
T Consensus 109 --asCsLs-dFglWS----~~qK~V~------K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~---- 170 (1081)
T KOG1538|consen 109 --ASCSLS-DFGLWS----PEQKSVS------KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE---- 170 (1081)
T ss_pred --hhcchh-hccccC----hhhhhHH------hhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe----
Confidence 554433 334454 2221111 12234678889999999999999 89999998755 44444331
Q ss_pred CCCCCCCcceEEEEEeCCCC----CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 276 ANMEDLTEVITSAEFHPTHC----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 276 ~~~~~~~~~v~~v~~~p~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.-.+.+++|++++|+|... ..+++.....++.+|.+.....-. -+++. -...|+.+.+
T Consensus 171 -Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk--~r~L~---------------FdP~CisYf~ 232 (1081)
T KOG1538|consen 171 -RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK--DRALN---------------FDPCCISYFT 232 (1081)
T ss_pred -CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc--cccCC---------------CCchhheecc
Confidence 3345788999999999642 477888888888888876543211 11111 2356788999
Q ss_pred CCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 352 ~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+|.|++.| +|+.+.+|..+ +-.+.++-....+ ||.++..|++++++.|+.||+|..|++...
T Consensus 233 NGEy~LiGGsdk~L~~fTR~--GvrLGTvg~~D~W---------------IWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRD--GVRLGTVGEQDSW---------------IWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred CCcEEEEccCCCceEEEeec--CeEEeecccccee---------------EEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 99999986 57999999764 5666665444444 489999999999999999999999998754
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.2e-20 Score=154.96 Aligned_cols=263 Identities=15% Similarity=0.249 Sum_probs=181.6
Q ss_pred ccccceEEEEEcCC----CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 33 ~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
.|...-..++|+-+ ..+||+|+.-|.|+|.|+..++ +...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-----------------------~~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-----------------------CSKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-----------------------hccceeccC--------
Confidence 46777888898763 3489999999999999998776 456788898
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|+.|.|.|. +.+++++++.|.+|++|++++..+..++..
T Consensus 136 ----~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------------- 176 (385)
T ss_pred ----ccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence 77999999984 457999999999999999999887665432
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
..+|.+.|.++.|++++.+|+++ -|.+|++|++...+-.
T Consensus 177 ----------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 177 ----------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred ----------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 26888999999999999999988 7999999998732211
Q ss_pred ee---------------eeccC---C--CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC-cccccccccccc
Q 012535 268 FN---------------IVDVK---P--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFE 326 (461)
Q Consensus 268 ~~---------------~~~~~---~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~ 326 (461)
-. +...+ | .+-.-|...|-|+.|- | .++++-+-++.|..|..-. .+. +....
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~----~~~vk 289 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEES----IHNVK 289 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhh----hhccC
Confidence 00 00000 0 0123367777788776 3 6788888888999998721 111 11110
Q ss_pred cccCCCccccccc---ccccee--EEEEccCCCEEEEecC-CeEEEEEccCCCCCe--eEEeeccCccccccccccCCCc
Q 012535 327 EQEAPGTRSFFTE---IIASIS--DIKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSI 398 (461)
Q Consensus 327 ~~~~~~~~~~~~~---h~~~v~--~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 398 (461)
..+ .....+.. -...|. ..+|.|-++.||.|.. |.|.+||++. .++. .++..+.. .
T Consensus 290 p~e--s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~-~ep~~~ttl~~s~~-------------~ 353 (385)
T KOG1034|consen 290 PPE--SATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN-NEPPKCTTLTHSKS-------------G 353 (385)
T ss_pred CCc--cceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC-CCCccCceEEeccc-------------c
Confidence 000 00001100 113344 4455677899999986 9999999996 3332 22222221 1
Q ss_pred cceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
..|...+|+.|+.+|+..++|+.|.-||..
T Consensus 354 ~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 354 STVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 124589999999999999999999999864
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.5e-19 Score=146.10 Aligned_cols=263 Identities=17% Similarity=0.232 Sum_probs=176.2
Q ss_pred ccccccceEEEEEcC-CCCEEEEeecC-------CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcc
Q 012535 31 EVQEVDIISAIEFDK-SGDHLATGDRG-------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE 102 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 102 (461)
...|.+.|+.++-+| +.+.|+|+..+ ..+.||.+...... +....++++..+..
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--------------S~~~tlE~v~~Ldt---- 120 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ--------------SNSSTLECVASLDT---- 120 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc--------------cccchhhHhhcCCH----
Confidence 446788999999999 66678877642 24678998654321 00011122222220
Q ss_pred hhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecC
Q 012535 103 FDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (461)
Q Consensus 103 ~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (461)
+..+.|.|+.|.| |+..+++-. |..|.+|++..+..+ .....
T Consensus 121 -------eavg~i~cvew~P--ns~klasm~-dn~i~l~~l~ess~~-vaev~--------------------------- 162 (370)
T KOG1007|consen 121 -------EAVGKINCVEWEP--NSDKLASMD-DNNIVLWSLDESSKI-VAEVL--------------------------- 162 (370)
T ss_pred -------HHhCceeeEEEcC--CCCeeEEec-cCceEEEEcccCcch-heeec---------------------------
Confidence 1125699999996 455666655 889999999876532 11110
Q ss_pred CCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC--CCCEEEEeCCCeEEEEE
Q 012535 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISADDLRINLWN 260 (461)
Q Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~d~~i~iwd 260 (461)
..++ ..+.....+-+|+| +++.+++..|+++..||
T Consensus 163 ----------------ss~s---------------------------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D 199 (370)
T KOG1007|consen 163 ----------------SSES---------------------------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWD 199 (370)
T ss_pred ----------------cccc---------------------------ccccceecccccCCCCccceEEEeCCCcEEEEE
Confidence 0000 12334455667888 58888888999999999
Q ss_pred ccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
+++..+...+ -..|...|..+.|+|+...+|++|+.||.|+|||.|..+. ++..+.+ |
T Consensus 200 ~RT~~~~~sI-------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---pv~el~~------------H 257 (370)
T KOG1007|consen 200 LRTMKKNNSI-------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---PVQELPG------------H 257 (370)
T ss_pred ccchhhhcch-------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---cccccCC------------C
Confidence 9987766543 3458888999999999878899999999999999998653 1444444 4
Q ss_pred ccceeEEEEccC-CCEEEEe-cCCeEEEEEccCCC-C---------------------------CeeEEeeccCcccccc
Q 012535 341 IASISDIKFARN-GRHILSR-DYMTLKLWDINMDS-G---------------------------PVATFQVHEHLRPKLC 390 (461)
Q Consensus 341 ~~~v~~l~~s~~-g~~l~s~-~d~~i~vwd~~~~~-~---------------------------~~~~~~~~~~~~~~~~ 390 (461)
...|.++.|+|. .++|++| +|..|.+|....-. + .+.++..|+
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE------- 330 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE------- 330 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc-------
Confidence 489999999994 4566665 57999999865411 1 111222222
Q ss_pred ccccCCCccceeeEEEecCCC-EEEEecCCCeEEEEecCC
Q 012535 391 DLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 429 (461)
+. |++++||.-.. .+|+-++||++.|=++..
T Consensus 331 -----DS---VY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 331 -----DS---VYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred -----cc---eEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 22 35999997665 567889999998877653
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=2.5e-19 Score=168.56 Aligned_cols=309 Identities=15% Similarity=0.227 Sum_probs=207.3
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
.-..+.|+|=...+++++..-.|++||.+.++.. ..|..+.. ....|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-----------------------~~F~n~~~---------~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-----------------------NGFDNGAF---------PDTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------ccccCCCC---------CCCccc
Confidence 4567888998888999987779999999877632 23333221 125699
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCC---ceeEEeeeecCC---CccCCCCCccccccccCcceeecCCCcccccc
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHP---EKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
.+.+....|..++++|+.||.|+||+--.. +.+.+.....-. ......+. -+.|......
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~---------v~dWqQ~~G~----- 1179 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL---------VVDWQQQSGH----- 1179 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCe---------eeehhhhCCe-----
Confidence 999987777889999999999999974322 211111111000 00011111 2344444333
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
|++++.-..|+||| ... ..+......+...-|+++.-+. .|+.+++| .||.|++||.+......
T Consensus 1180 -------Ll~tGd~r~IRIWD-a~~------E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1180 -------LLVTGDVRSIRIWD-AHK------EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred -------EEecCCeeEEEEEe-ccc------ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence 47777799999999 322 1122222234445566665332 37899999 99999999998655421
Q ss_pred eeeccCCCCCCCCCcc--eEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 269 NIVDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
.+ .....|+.. |..+.+.+.|-..|++|+.||.|++||+|.... .. ..+...+... .+..++
T Consensus 1246 ~v-----~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~-~~~iv~~~~y---------Gs~lTa 1309 (1387)
T KOG1517|consen 1246 LV-----CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET-FLTIVAHWEY---------GSALTA 1309 (1387)
T ss_pred cc-----eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc-cceeeecccc---------Ccccee
Confidence 11 134456666 999999998856699999999999999998521 11 1222222211 024899
Q ss_pred EEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 347 l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+..+++...+|+|+.+.|+||++. ++.+..++.+.... ...+..+.+++|+|-.-+||+|+.|..|.||.
T Consensus 1310 l~VH~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred eeeccCCCeeeecCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 999999999999988999999996 67777777654432 23444456999999999999999999999998
Q ss_pred cCCCC
Q 012535 427 CSEGS 431 (461)
Q Consensus 427 ~~~~~ 431 (461)
....+
T Consensus 1380 ~~k~~ 1384 (1387)
T KOG1517|consen 1380 CEKPR 1384 (1387)
T ss_pred cCCcC
Confidence 87553
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.5e-21 Score=181.45 Aligned_cols=169 Identities=16% Similarity=0.237 Sum_probs=134.2
Q ss_pred cccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeE
Q 012535 230 HAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 307 (461)
..|.+.|..+.|++... +||+| +||.|.|||+...+..+.. .-....+.|.+++|+..-..+|++++.+|.+
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 67889999999999855 89999 8999999999976655431 1122567899999998776899999999999
Q ss_pred EEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCC-EEEEe--cC--CeEEEEEccCCCCCeeEEeec
Q 012535 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSR--DY--MTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~ 382 (461)
.|||++..+. +-.+..+... ..+..++|+|+.. .|+++ +| -.|.+||++....+++++++|
T Consensus 187 ~iWDlr~~~p----ii~ls~~~~~----------~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 187 VIWDLRKKKP----IIKLSDTPGR----------MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred eeccccCCCc----ccccccCCCc----------cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 9999998865 2233222110 3488999999763 33333 34 689999999878899999999
Q ss_pred cCccccccccccCCCccceeeEEEecCC-CEEEEecCCCeEEEEecCCCCcc
Q 012535 383 EHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
...+ +++.|++.+ ++|++++.|+.|.+|+.++++..
T Consensus 253 ~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 253 QRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred ccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 9775 599999976 89999999999999999998765
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=1.9e-19 Score=160.47 Aligned_cols=125 Identities=20% Similarity=0.286 Sum_probs=100.4
Q ss_pred ceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc-CCCEEEEec-C
Q 012535 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-Y 361 (461)
Q Consensus 284 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~g~~l~s~~-d 361 (461)
.|+.++|.|-....||+++.||.|++|.+..+.... ....+...++.|...|+++.|+| -...|++++ |
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE---------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCc---------ccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 346777777665789999999999999987765311 11223346778889999999999 445677766 5
Q ss_pred CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 362 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.+|++||+.+ ......+.+|...+ ++++|||||+.+|+.+.||.|++|+.+++++.
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdqI---------------f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQI---------------FGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCce---------------eEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999996 88888999998765 69999999999999999999999999987543
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=3.4e-19 Score=150.09 Aligned_cols=277 Identities=17% Similarity=0.265 Sum_probs=184.8
Q ss_pred eeccccccCCcccccccccceEEEEEcC-----CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccc
Q 012535 18 KFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (461)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
||.++|++....+.--..-.|+-++|.. +.++||. +|+...+..... ..+.+.+. --..
T Consensus 10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGgaf~V--iPl~k~Gr------~d~~ 73 (472)
T KOG0303|consen 10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGAFLV--IPLVKTGR------MDAS 73 (472)
T ss_pred hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcceee--cccccccc------cCCC
Confidence 5667888776644444455677777764 4455554 344443321100 00000000 0012
Q ss_pred cccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccccc
Q 012535 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (461)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (461)
.-.+.||. ++|..++|+|. +...|++|+.|.+|.||.+-.+.+.....
T Consensus 74 ~P~v~GHt------------~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------- 121 (472)
T KOG0303|consen 74 YPLVCGHT------------APVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLT------------------- 121 (472)
T ss_pred CCCccCcc------------ccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcc-------------------
Confidence 23467898 88999999995 45789999999999999986553222111
Q ss_pred ccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe
Q 012535 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA 251 (461)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~ 251 (461)
++. ..+.+|...|--++|+|. .+.|+++
T Consensus 122 --------------------------------------------------epv-v~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 122 --------------------------------------------------EPV-VELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred --------------------------------------------------cce-EEEeecceeEEEEeecccchhhHhhc
Confidence 111 114799999999999998 5566676
Q ss_pred -CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccC
Q 012535 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
.|+.|.+|++.+++..+. +. |.+.|.++.|+-+| .+|++.+.|..|||||.+++... ..-..|..
T Consensus 151 g~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v----~e~~~heG 216 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVV----SEGVAHEG 216 (472)
T ss_pred cCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEe----eecccccC
Confidence 899999999998887764 34 99999999999999 99999999999999999999863 33344432
Q ss_pred CCccccccccccceeEEEEccCCCEEEEe----cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 331 PGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~g~~l~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
..-..+.|-.+|..+.+| ++..+-+||..+-.+++...+-.... .|+---|
T Consensus 217 -----------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--------------Gvl~PFy 271 (472)
T KOG0303|consen 217 -----------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--------------GVLLPFY 271 (472)
T ss_pred -----------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC--------------ceEEeee
Confidence 234556777888866666 35899999987644553322222111 1223446
Q ss_pred ecCCCEEE-EecCCCeEEEEecCCCCc
Q 012535 407 SGDGGRVA-TGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 407 s~~~~~l~-s~~~dg~i~iw~~~~~~~ 432 (461)
.+|.+.+. +|-.|+.|+.|.+.+...
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCc
Confidence 77777665 556799999999997753
No 162
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=4.5e-19 Score=163.75 Aligned_cols=285 Identities=13% Similarity=0.186 Sum_probs=190.8
Q ss_pred CCceeeeccccccCCcccccccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccc
Q 012535 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (461)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (461)
..+.|.+..- ..+...+.-...|+|+.|+| +..+||.|..+|.|.+||+..+... |...
T Consensus 223 ~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG 282 (555)
T ss_pred eEEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence 4567888763 22333445678899999999 7789999999999999999876542 0001
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEE---eeeecC-CCccCCCCCc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV---FDWNVH-PEKAAGNGPI 167 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~---~~~~~~-~~~~~~~~~v 167 (461)
.-.....|. .+++.+.|.....+.-|++++.||.|..|+++.-..... .....+ ..+......+
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~ 350 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGA 350 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccce
Confidence 112234455 889999999765556799999999999998764322110 111100 0000111111
Q ss_pred cccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccc--cceeeEeeecccccceeeEEeCCCC
Q 012535 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDG 245 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (461)
. +++|.+..... +++|+++|.|.--+ -....... ..+.... ...|.+.|.++.++|-+
T Consensus 351 t-------~~~F~~~~p~~-----------FiVGTe~G~v~~~~-r~g~~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~ 410 (555)
T KOG1587|consen 351 T-------SLKFEPTDPNH-----------FIVGTEEGKVYKGC-RKGYTPAPEVSYKGHST-FITHIGPVYAVSRNPFY 410 (555)
T ss_pred e-------eEeeccCCCce-----------EEEEcCCcEEEEEe-ccCCccccccccccccc-ccccCcceEeeecCCCc
Confidence 1 56776665543 78999999998633 11111111 1112222 26788999999999987
Q ss_pred CEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccc
Q 012535 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (461)
Q Consensus 246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (461)
..++.. .|.++++|.......+.. .+..+...+++++|||..+..|+++..||.|.+||+....... +.+
T Consensus 411 ~k~fls~gDW~vriWs~~~~~~Pl~-------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P--v~s 481 (555)
T KOG1587|consen 411 PKNFLSVGDWTVRIWSEDVIASPLL-------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP--VLS 481 (555)
T ss_pred cceeeeeccceeEeccccCCCCcch-------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC--ccc
Confidence 666555 899999998773222221 3455677799999999998999999999999999998754321 222
Q ss_pred cccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEcc
Q 012535 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~ 370 (461)
.... ....+.+.|+++|+.|+.|++ |++.+|++.
T Consensus 482 ~~~~------------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 482 QKVC------------SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccc------------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 2211 156788889999999999997 999999996
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=155.48 Aligned_cols=251 Identities=17% Similarity=0.263 Sum_probs=186.5
Q ss_pred cccceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 34 EVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 34 h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
...+|.+.+|.|+|. .+++++....++.||+.+.+.. .+....+++.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~---------------------k~~~~~g~e~----------- 303 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT---------------------KLKPPYGVEE----------- 303 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccc---------------------cccCCCCccc-----------
Confidence 457899999999999 8999999999999999887643 2333444441
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..+.....+ +++.+|+..+..|.|.+....+++++..+... |.+. .+.|+.+|+.+
T Consensus 304 ~~~e~FeVS--hd~~fia~~G~~G~I~lLhakT~eli~s~Kie---------G~v~-------~~~fsSdsk~l------ 359 (514)
T KOG2055|consen 304 KSMERFEVS--HDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---------GVVS-------DFTFSSDSKEL------ 359 (514)
T ss_pred chhheeEec--CCCCeEEEcccCceEEeehhhhhhhhheeeec---------cEEe-------eEEEecCCcEE------
Confidence 446667777 56779999999999999999999887777664 3344 77899999885
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++++.+|.|.+|| +... .+.+.+...-.-.-++++.++++.+||+| +.|.|.|||.++-....
T Consensus 360 ------~~~~~~GeV~v~n-l~~~------~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~--- 423 (514)
T KOG2055|consen 360 ------LASGGTGEVYVWN-LRQN------SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST--- 423 (514)
T ss_pred ------EEEcCCceEEEEe-cCCc------ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC---
Confidence 8889999999999 5332 45555533222233567788999999999 79999999975322111
Q ss_pred ccCC-CCCCCCCcceEEEEEeCCCCCeEEEEec--CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 272 DVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 272 ~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
..+| .++......|++++|+|+. ++||.++. +..+|+..+.+... ...+...+. ..+.|+|++
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TV----FsNfP~~n~---------~vg~vtc~a 489 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTV----FSNFPTSNT---------KVGHVTCMA 489 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceee----eccCCCCCC---------cccceEEEE
Confidence 1122 2455567889999999998 89888876 67899988877554 223332211 125799999
Q ss_pred EccCCCEEEEecC-CeEEEEEcc
Q 012535 349 FARNGRHILSRDY-MTLKLWDIN 370 (461)
Q Consensus 349 ~s~~g~~l~s~~d-~~i~vwd~~ 370 (461)
|+|.|.+||.|++ |.+.+|.+.
T Consensus 490 FSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 490 FSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceEEeecCCCceeeEeec
Confidence 9999999999986 999999875
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=2.8e-19 Score=159.49 Aligned_cols=269 Identities=13% Similarity=0.175 Sum_probs=178.0
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+.|...|..+.|-|....|++++.|.++++||+.+.+.. -...+.||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---------------------G~~~~~GH~--------- 144 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---------------------GGRLNLGHT--------- 144 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---------------------cceeecccc---------
Confidence 46679999999999996678999999999999999987654 122477888
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEE-------eeeec---CCCccC---------CCCCcccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-------FDWNV---HPEKAA---------GNGPIFGS 170 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-------~~~~~---~~~~~~---------~~~~v~~~ 170 (461)
..|.+++|.| .|...|++|+.||.|.|||++....... ...+. .+.... +.+.+...
T Consensus 145 ---~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss 220 (720)
T KOG0321|consen 145 ---GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS 220 (720)
T ss_pred ---cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence 8899999998 4567999999999999999875431110 00000 010000 01111100
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccC-CCcEEeeeeecccCccccceeeEee-eccc---ccceeeEEeCCCC
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIY-AHAH---DYHINSISNNSDG 245 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~---~~~v~~i~~~~~~ 245 (461)
..+.+..|... |++++. |+.|++|| +.........+..... +..| ...+.++..+..|
T Consensus 221 ----vTvv~fkDe~t------------laSaga~D~~iKVWD-LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 221 ----VTVVLFKDEST------------LASAGAADSTIKVWD-LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred ----eEEEEEeccce------------eeeccCCCcceEEEe-ecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 01222333333 477666 99999999 7665554444433322 1222 3456777777778
Q ss_pred CEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCc--ceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccc
Q 012535 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (461)
Q Consensus 246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 322 (461)
.+|.+. .|+.|.+|++......... .+.++.. .-..-..+|++ ..+++|+.|....+|.+...+.-
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~------~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~---- 352 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVA------EFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAP---- 352 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchh------hccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCC----
Confidence 887765 8999999999865432211 1222221 11233568998 89999999999999999876531
Q ss_pred cccccccCCCccccccccccceeEEEEcc--CCCEEEEecCCeEEEEEccC
Q 012535 323 KLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~g~~l~s~~d~~i~vwd~~~ 371 (461)
...+.+|...|++++|.| .+..+.+.+|..+++|++..
T Consensus 353 -----------~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 353 -----------PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred -----------hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 233455668899999998 44455454469999999975
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.8e-19 Score=158.31 Aligned_cols=260 Identities=14% Similarity=0.208 Sum_probs=187.7
Q ss_pred cccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccccc
Q 012535 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (461)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (461)
...+.+|+ +.|.+|...| .|.+|++|+.||+|+||.+.+++++....... .|.
T Consensus 393 ~lvyrGHt------------g~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---------~I~---- 445 (733)
T KOG0650|consen 393 ALVYRGHT------------GLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---------EIR---- 445 (733)
T ss_pred eeeEeccC------------CeEEEEEecC--CcceeeecCCCCcEEEEEeecceEEEEEeecc---------eeE----
Confidence 34477888 8899999985 57899999999999999999999988877643 344
Q ss_pred ccCcceeecCCCcccccccC------------------CCCCccccc----cCCCcEEeeeeecccCccccceeeEeeec
Q 012535 173 SAIPKSYMANGGCGERNFGC------------------ASNDSSFPP----GGVSSLRLPVVVTSQETNLVAGCRRIYAH 230 (461)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~------------------~~~~~~~~~----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 230 (461)
+++|.|.+..-.+.... ...+.|+.+ ..++.+..|. -...+..... .+. .-
T Consensus 446 ---~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~-~~~~~e~~~~--v~~-~I 518 (733)
T KOG0650|consen 446 ---SVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWS-RASLDELEKG--VCI-VI 518 (733)
T ss_pred ---EEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeec-hhhhhhhccc--eEE-EE
Confidence 77888877643211110 011222222 2334555554 1111111111 111 24
Q ss_pred ccccceeeEEeCCCCCEEEEe----CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCe
Q 012535 231 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (461)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 306 (461)
.|...|+.+.|+..|.+|++. ....|.|+++....... .+....+.|.++.|+|.. .+|++++ ...
T Consensus 519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~--------PF~kskG~vq~v~FHPs~-p~lfVaT-q~~ 588 (733)
T KOG0650|consen 519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQS--------PFRKSKGLVQRVKFHPSK-PYLFVAT-QRS 588 (733)
T ss_pred ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccC--------chhhcCCceeEEEecCCC-ceEEEEe-ccc
Confidence 677899999999999999985 25788899987443221 244457889999999998 5555544 467
Q ss_pred EEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCc
Q 012535 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (461)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~ 385 (461)
|+|||+....+ +..+.... ..|..++.+|.|..|+.|+ |+.+..||+....++.+++..|...
T Consensus 589 vRiYdL~kqel----vKkL~tg~------------kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a 652 (733)
T KOG0650|consen 589 VRIYDLSKQEL----VKKLLTGS------------KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA 652 (733)
T ss_pred eEEEehhHHHH----HHHHhcCC------------eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh
Confidence 99999988765 33333322 5799999999999999887 6999999999878899999999987
Q ss_pred cccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
+. +++|++.-.++++|+.||.+.||.-
T Consensus 653 vr---------------~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 653 VR---------------SVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hh---------------hhhhccccceeeeecCCCcEEEEee
Confidence 74 9999999999999999999999864
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=2.4e-18 Score=145.52 Aligned_cols=304 Identities=14% Similarity=0.190 Sum_probs=197.5
Q ss_pred ccceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 35 VDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 35 ~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
..+|.++.|.++.. .||||+.|..|+||.+......+. .+...+...+..|. .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~------------~ 66 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHT------------R 66 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCc------------c
Confidence 46899999999766 999999999999999876543210 13456788899998 7
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc--------------eeEEeeeecCCCccCCCCCccccccccCccee
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--------------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (461)
.|++++|+ ++|..+++|+.+|.|.+|....-. ......... +...++ .++|
T Consensus 67 aVN~vRf~--p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~------h~~diy-------dL~W 131 (434)
T KOG1009|consen 67 AVNVVRFS--PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG------HRDDIY-------DLAW 131 (434)
T ss_pred eeEEEEEc--CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc------cccchh-------hhhc
Confidence 89999999 567799999999999999876211 111111111 112233 7899
Q ss_pred ecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEE
Q 012535 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINL 258 (461)
Q Consensus 180 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~i 258 (461)
+|++..+ ++++.|..+++|| +.. ...... ...|...|..++|.|-++++++- .|...+.
T Consensus 132 s~d~~~l------------~s~s~dns~~l~D-v~~------G~l~~~-~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 132 SPDSNFL------------VSGSVDNSVRLWD-VHA------GQLLAI-LDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred cCCCcee------------eeeeccceEEEEE-ecc------ceeEee-ccccccccceeecchhhhhhhhhccCcccce
Confidence 9999986 9999999999999 422 222223 37899999999999999999886 6776666
Q ss_pred EEccCCCCceeee-ccCCC-----------CC---CCCCcceEEEEEeCCCCCeEEEEec----CCeE-----EEEECCC
Q 012535 259 WNLEISNQSFNIV-DVKPA-----------NM---EDLTEVITSAEFHPTHCNMLAYSSS----KGSI-----RLIDMRQ 314 (461)
Q Consensus 259 wd~~~~~~~~~~~-~~~~~-----------~~---~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i-----~iwd~~~ 314 (461)
+++...+....+- ...+. ++ .......+.++|+|+| .+|++... .+.+ ++|+-
T Consensus 192 ~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsr-- 268 (434)
T KOG1009|consen 192 FSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSR-- 268 (434)
T ss_pred eeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeecc--
Confidence 6665332221111 00000 00 0112345678899999 78876542 2222 22221
Q ss_pred cccccccccccccccCCCccccccccccceeEEEEcc------------------CCCEEEEecCCeEEEEEccCCCCCe
Q 012535 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------------------NGRHILSRDYMTLKLWDINMDSGPV 376 (461)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~------------------~g~~l~s~~d~~i~vwd~~~~~~~~ 376 (461)
+...++...+.... .+...+.|+| -+-.+|.+..+.|+|||.++ -.++
T Consensus 269 -k~l~rP~~~lp~~~------------k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~-~~P~ 334 (434)
T KOG1009|consen 269 -KDLKRPAARLPSPK------------KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT-LEPL 334 (434)
T ss_pred -ccccCceeecCCCC------------cceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-ccce
Confidence 11111122222221 3344444443 23345557778999999986 5666
Q ss_pred eEEee-ccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 377 ATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 377 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
..... |-.. +++++|++||.+|+..|.||...+-.++..+
T Consensus 335 ~~v~nihy~~---------------iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 335 AVVDNIHYSA---------------ITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEeeeeeee---------------ecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 55533 3333 3599999999999999999988887777554
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=2.6e-19 Score=147.25 Aligned_cols=284 Identities=16% Similarity=0.216 Sum_probs=179.9
Q ss_pred cccccceEEEEEcC-----CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhc
Q 012535 32 VQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (461)
Q Consensus 32 ~~h~~~V~~~~~s~-----~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (461)
..|..+|..++|++ ....+|+++.+ .+.||+......+ +.+..+...+.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------r~lq~y~D~d~----- 88 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------RLLQSYADEDH----- 88 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------eeeeeccCCCC-----
Confidence 45888999999996 33467776655 7899997654321 12222221111
Q ss_pred cccccccceEEEEEeecCC--CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 107 KSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
++....++|+-..+ +.++++|+.-|.|+|.|+.++++..
T Consensus 89 -----~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---------------------------------- 129 (385)
T KOG1034|consen 89 -----DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---------------------------------- 129 (385)
T ss_pred -----CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc----------------------------------
Confidence 15567777764322 3466667777777777766554321
Q ss_pred cccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC-CEEEEe-CCCeEEEEEcc
Q 012535 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLE 262 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~ 262 (461)
. +.+|...|+.|.+.|+. ++++++ .|..|++|+++
T Consensus 130 ------------------------------------------~-~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 130 ------------------------------------------N-YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred ------------------------------------------c-eeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 1 26888999999999984 677777 79999999999
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccc--ccccccccC----CCccc-
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--SKLFEEQEA----PGTRS- 335 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~~~~~- 335 (461)
+.. ++.++ ...++|.+.|.++.|++++ ..|++++.|..|++|++...+..... ..++..... |.+..
T Consensus 167 ~~~-Cv~Vf----GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 167 TDV-CVAVF----GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred CCe-EEEEe----cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 544 44443 3678899999999999999 89999999999999999865432110 111111100 00001
Q ss_pred -----cccccccceeEEEEccCCCEEEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeE--EEe
Q 012535 336 -----FFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC--CLS 407 (461)
Q Consensus 336 -----~~~~h~~~v~~l~~s~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s 407 (461)
.-.-|...|-|+.|- |.++++ +.++.|..|....-.+.+......+.....+..+... .-+||-+ +|.
T Consensus 241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~--~c~iWfirf~~d 316 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP--MCDIWFIRFAFD 316 (385)
T ss_pred cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC--ccceEEEEEeec
Confidence 112367778888886 678998 4479999998721123322222221111111111111 1123444 555
Q ss_pred cCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 408 GDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
|-+++||.|...|.|++||+++.+..
T Consensus 317 ~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 317 PWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCc
Confidence 66899999999999999999988664
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.3e-19 Score=159.36 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=193.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|++++|.|....|++++.||.|.+|+++..... -..+.+.+.+|.+|.
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~---------- 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE---------- 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc----------
Confidence 4568999999999999999999999999999999432211 123556778899999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
++|.|++.. .++..+++|+.||+|+.|++-... .|+..+
T Consensus 345 --gPVl~v~v~--~n~~~~ysgg~Dg~I~~w~~p~n~--------------------------------dp~ds~----- 383 (577)
T KOG0642|consen 345 --GPVLCVVVP--SNGEHCYSGGIDGTIRCWNLPPNQ--------------------------------DPDDSY----- 383 (577)
T ss_pred --CceEEEEec--CCceEEEeeccCceeeeeccCCCC--------------------------------Cccccc-----
Confidence 889999998 678899999999999999875211 000000
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+. ......+.||.+.|+.+++++....|+++ .||++++|+......+ .
T Consensus 384 --------------------------dp----~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-~ 432 (577)
T KOG0642|consen 384 --------------------------DP----SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-T 432 (577)
T ss_pred --------------------------Cc----chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc-c
Confidence 00 00001137999999999999999899999 8999999998744431 1
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+ ......+...++.+-.....+.++...-+.-.++++..... +..+.....+.+.. ...+..+.+
T Consensus 433 -f-----~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~~-----~~~in~vVs 497 (577)
T KOG0642|consen 433 -F-----GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPRR-----YPQINKVVS 497 (577)
T ss_pred -c-----CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCcccc-----cCccceEEe
Confidence 1 11122344566666654323333333334334444443332 33333322221111 135778889
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+|.+.+.+++- ++.|+++|..+ +.++.....|...+ .++++.|+|.+|++|+.||.+++|++.
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cCCCCeeEecccCCceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhcc
Confidence 99988888875 59999999997 89999888888766 499999999999999999999999997
Q ss_pred CCCcc
Q 012535 429 EGSAE 433 (461)
Q Consensus 429 ~~~~~ 433 (461)
...+.
T Consensus 562 ~k~~~ 566 (577)
T KOG0642|consen 562 VKTCV 566 (577)
T ss_pred chhee
Confidence 66443
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.6e-19 Score=153.03 Aligned_cols=205 Identities=15% Similarity=0.284 Sum_probs=155.1
Q ss_pred ccccceEEEEEcCCC-CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 33 QEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
+|++.|.+++|+..- +.||+|+.|.+|++||+.+++ +..++..|.
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-----------------------p~~s~~~~~----------- 286 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-----------------------PKSSITHHG----------- 286 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-----------------------cceehhhcC-----------
Confidence 699999999999854 489999999999999999887 445667777
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|.++.|+|. ....|++|+.|++|.+.|.+..... +..|.-
T Consensus 287 -k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s--------------------------~~~wk~---------- 328 (463)
T KOG0270|consen 287 -KKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNS--------------------------GKEWKF---------- 328 (463)
T ss_pred -CceeEEEecCC-CceEEEeccccceEEeeeccCcccc--------------------------CceEEe----------
Confidence 77999999984 5779999999999999998741100 112211
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCcee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
.+.|-.++|.|... .++++ +||.|+-+|+|..+.+.-
T Consensus 329 -----------------------------------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 329 -----------------------------------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred -----------------------------------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee
Confidence 24566788888744 44555 899999999998765543
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
++..|.+.|.++++++.-+.++++++.|+.+++|++..........+.+.. +...|.++
T Consensus 368 -------t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~--------------~rl~c~~~ 426 (463)
T KOG0270|consen 368 -------TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL--------------GRLHCFAL 426 (463)
T ss_pred -------EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc--------------cceeeccc
Confidence 567799999999999998899999999999999998765432111222222 34677788
Q ss_pred ccCCCEEEE-ecC-CeEEEEEccC
Q 012535 350 ARNGRHILS-RDY-MTLKLWDINM 371 (461)
Q Consensus 350 s~~g~~l~s-~~d-~~i~vwd~~~ 371 (461)
.|+-.++++ |+. +.++|||+.+
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred CCCcceEEEecCccceEEEeeccc
Confidence 886655554 554 7899999986
No 170
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.7e-18 Score=144.68 Aligned_cols=311 Identities=9% Similarity=0.103 Sum_probs=206.6
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|.++.||.++++||+|+.|..+++|++...-.. +. | +.+ .+.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~--------k~-------~--KPI-~~~~~~---------- 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR--------KT-------P--KPI-GVMEHP---------- 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh--------cC-------C--CCc-eeccCc----------
Confidence 4579999999999999999999999999999998642211 00 0 011 123332
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
|...|.|++|. ..++.+++|..+++|.+.|+++.+.+.+...... .|.|+ .+..+|....
T Consensus 104 H~SNIF~L~F~--~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~------~~~VY-------~m~~~P~DN~----- 163 (609)
T KOG4227|consen 104 HRSNIFSLEFD--LENRFLYSGERWGTVIKHDIETKQSIYVANENNN------RGDVY-------HMDQHPTDNT----- 163 (609)
T ss_pred cccceEEEEEc--cCCeeEecCCCcceeEeeecccceeeeeecccCc------cccee-------ecccCCCCce-----
Confidence 12679999998 5577999999999999999999887776655432 34566 5566676555
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCce
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+++.+.++.|.+|| +..........|. .........+.|+|... +|++. +.+-+-+||.+.....+
T Consensus 164 -------~~~~t~~~~V~~~D-~Rd~~~~~~~~~~----AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 164 -------LIVVTRAKLVSFID-NRDRQNPISLVLP----ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred -------EEEEecCceEEEEe-ccCCCCCCceeee----cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 48999999999999 5443321111121 23335567788999855 45555 68889999998655432
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
..... -..++.....-.++.|+|.| ..|.+--....-.+||+-+.++. +..+.. +..+ .-....+.+++
T Consensus 232 ~~~~~-~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~---V~k~D~-N~~G-----Y~N~~T~KS~~ 300 (609)
T KOG4227|consen 232 YQRSM-FKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCF---VLKSDH-NPNG-----YCNIKTIKSMT 300 (609)
T ss_pred Hhhhc-cccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccce---eEeccC-CCCc-----ceeeeeeeeee
Confidence 11000 01122222233688999999 66666555556667888765431 222221 1000 11124577888
Q ss_pred EccCCCEEEEecC-CeEEEEEccCCC----------------------CCeeEEeeccCccccccccccCCCccceeeEE
Q 012535 349 FARNGRHILSRDY-MTLKLWDINMDS----------------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 349 ~s~~g~~l~s~~d-~~i~vwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
|--| .-+++|+| -.|++|.+.... +.+..+++|...++ .+.
T Consensus 301 F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N---------------QVR 364 (609)
T KOG4227|consen 301 FIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN---------------QVR 364 (609)
T ss_pred eecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc---------------cee
Confidence 8754 45888887 889999986411 13456777777664 899
Q ss_pred EecCCCEEEEecCCCeEEEEecC
Q 012535 406 LSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
|+|...+|++.+-.+.++||.-.
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCcceEeccchhhheeccccc
Confidence 99999999999999999999764
No 171
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.7e-18 Score=138.27 Aligned_cols=245 Identities=12% Similarity=0.199 Sum_probs=161.3
Q ss_pred ccccccceEEEEEcC--CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 31 EVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~--~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
-..|.+.|..+.|-+ -|+.+|+++.|+++.||+=...... ... ..+...+++....
T Consensus 55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~--------~~~------~~Wv~~ttl~Dsr-------- 112 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE--------AHG------RRWVRRTTLVDSR-------- 112 (361)
T ss_pred EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc--------ccc------ceeEEEEEeecCC--------
Confidence 456999999999976 6899999999999999985322110 000 0222334444444
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|+.|.|.|..-|-.+++++.||++|||+.-.---...-..+.. + .+...|
T Consensus 113 ----ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E---------i--------~~~~~p------- 164 (361)
T KOG2445|consen 113 ----SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE---------I--------QNVIDP------- 164 (361)
T ss_pred ----cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh---------h--------hhccCC-------
Confidence 779999999988899999999999999998643211111010000 0 000001
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC---CCEEEEeCC------CeEEEE
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISADD------LRINLW 259 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~d------~~i~iw 259 (461)
...+.....|+.|+|. .++|+.|.| +.+.||
T Consensus 165 ----------------------------------------p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 165 ----------------------------------------PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred ----------------------------------------cccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence 1234456678888875 567888844 488999
Q ss_pred EccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCC---CeEEEEecCCeEEEEECCCccccccccccccccc----CC-
Q 012535 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE----AP- 331 (461)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~- 331 (461)
........... ..++.+|..+|+.++|.|+-. .+||+++.|| |+||.+........ ........ .+
T Consensus 205 e~~e~~rKw~k----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~-~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 205 EYNENGRKWLK----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE-EEEVLAPDLMTDLPV 278 (361)
T ss_pred EecCCcceeee----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh-hhcccCCCCccccce
Confidence 87655433322 146779999999999999632 4799999999 99999975321000 00000000 00
Q ss_pred CccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccC
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~ 371 (461)
.....+.+|.+.|..+.|+-.|..|++. +||.||+|....
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 1123467888999999999999999984 569999998763
No 172
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6e-19 Score=152.56 Aligned_cols=320 Identities=12% Similarity=0.136 Sum_probs=218.4
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|..|.|+..|..|++|+.|..|.+||+..+... +.-..+|.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~---------- 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC---------- 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence 3469999999999999999999999999999999876532 23345676
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccC-CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|..-.|.|..+..-+++++.||.+++=.+.. +.+..+.....+ .+.+. .++..|+....
T Consensus 186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h------~g~vh-------klav~p~sp~~--- 247 (559)
T KOG1334|consen 186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH------EGPVH-------KLAVEPDSPKP--- 247 (559)
T ss_pred --cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc------cCccc-------eeeecCCCCCc---
Confidence 567777899887788899999999999987653 333323222221 23333 55666666653
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
|.+++.|+.+.-+| +..........|+..- ....-....++..|... .++++ .|..+++||.+.-...
T Consensus 248 --------f~S~geD~~v~~~D-lr~~~pa~~~~cr~~~-~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e 317 (559)
T KOG1334|consen 248 --------FLSCGEDAVVFHID-LRQDVPAEKFVCREAD-EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE 317 (559)
T ss_pred --------ccccccccceeeee-eccCCccceeeeeccC-CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc
Confidence 78999999999999 6554443333333221 11123567889998755 67777 8999999998753322
Q ss_pred ee---eeccCCCCC-CCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc-
Q 012535 268 FN---IVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA- 342 (461)
Q Consensus 268 ~~---~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 342 (461)
-. +-.+-|..+ ......|++++|+.++ .-|.++..|-.|+++.-..+.... ...... ..+....+++||.+
T Consensus 318 ~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~--p~~~s~-~~~~~k~vYKGHrN~ 393 (559)
T KOG1334|consen 318 ENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSE--PDPSSP-REQYVKRVYKGHRNS 393 (559)
T ss_pred cccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCC--CCCCcc-hhhccchhhcccccc
Confidence 10 001112122 2345678999999887 566667888889999443322100 000000 01112233566644
Q ss_pred -ceeEEEE-ccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC
Q 012535 343 -SISDIKF-ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (461)
Q Consensus 343 -~v~~l~~-s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (461)
.|.++-| -|...|+++|+| |.|.||+-.+ ++.+..+++....++ ++.=+|--..||++|-|
T Consensus 394 ~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~VVN---------------CLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 394 RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVVN---------------CLEPHPHLPVLASSGID 457 (559)
T ss_pred cccceeeeccCccceEEecCccceEEEEecch-hHHHHHhhcccceEe---------------ccCCCCCCchhhccCCc
Confidence 4667765 478899999999 9999999986 888888888777554 88888888999999999
Q ss_pred CeEEEEecCCC
Q 012535 420 NLFRVFGCSEG 430 (461)
Q Consensus 420 g~i~iw~~~~~ 430 (461)
.-|+||-..+.
T Consensus 458 ~DVKIWTP~~~ 468 (559)
T KOG1334|consen 458 HDVKIWTPLTA 468 (559)
T ss_pred cceeeecCCcc
Confidence 99999988544
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=151.38 Aligned_cols=215 Identities=13% Similarity=0.174 Sum_probs=157.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
...|+.++.||.+.+.+- .++.......| .+.+. +-.|+|+|..+ ++.++||
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH--------~~A~~-------~gRW~~dGtgL------------lt~GEDG 126 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAH--------AAAIS-------SGRWSPDGAGL------------LTAGEDG 126 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhh--------hhhhh-------hcccCCCCcee------------eeecCCc
Confidence 457999999999998873 34444433333 23344 56899999986 9999999
Q ss_pred cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcce
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (461)
.|++|. ..+... ..+.....+|.|++|.|+.+.++.+..+.+.+=-+....... .+..|.+-|
T Consensus 127 ~iKiWS----rsGMLR-----Stl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGii 189 (737)
T KOG1524|consen 127 VIKIWS----RSGMLR-----STVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLV 189 (737)
T ss_pred eEEEEe----ccchHH-----HHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEE
Confidence 999998 222221 112344578999999999998888866777766665333332 577899999
Q ss_pred EEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEE
Q 012535 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (461)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~ 365 (461)
.++.|+|.. +++++|+.|-..++||..... +++-..|+ .+|++++|.|+ +.++.++.+++|
T Consensus 190 L~~~W~~~s-~lI~sgGED~kfKvWD~~G~~-----Lf~S~~~e------------y~ITSva~npd-~~~~v~S~nt~R 250 (737)
T KOG1524|consen 190 LSLSWSTQS-NIIASGGEDFRFKIWDAQGAN-----LFTSAAEE------------YAITSVAFNPE-KDYLLWSYNTAR 250 (737)
T ss_pred EEeecCccc-cceeecCCceeEEeecccCcc-----cccCChhc------------cceeeeeeccc-cceeeeeeeeee
Confidence 999999998 999999999999999986654 33333333 78999999999 777778887877
Q ss_pred EEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 366 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
+=..+. + .|+.++||+||..+++|+..|.+.+=.+-..+
T Consensus 251 ~~~p~~------------G---------------SifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 251 FSSPRV------------G---------------SIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ 289 (737)
T ss_pred ecCCCc------------c---------------ceEEEEEcCCCceeeccccCceEEEeeeehhh
Confidence 322211 1 13599999999999999999988765554433
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=9.6e-18 Score=132.46 Aligned_cols=262 Identities=15% Similarity=0.157 Sum_probs=175.1
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
..|.+-+|+|.+++|++|+.+|.|-++.++..... -..+|....+..+++|+ .+|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 35777889999999999999999999998653211 11223333444568898 889
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
+.++|. ..+|+++ .||.|+-|..++.....-.
T Consensus 66 y~~~f~----d~~Lls~-gdG~V~gw~W~E~~es~~~------------------------------------------- 97 (325)
T KOG0649|consen 66 YYLAFH----DDFLLSG-GDGLVYGWEWNEEEESLAT------------------------------------------- 97 (325)
T ss_pred eeeeee----hhheeec-cCceEEEeeehhhhhhccc-------------------------------------------
Confidence 999997 2355555 4599999987654321000
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccC
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (461)
=++|. ... +.+.- .-.-..|+++-+.|..+-++.+ .|+.++.||+++++...
T Consensus 98 -----------K~lwe----~~~-----P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r------ 150 (325)
T KOG0649|consen 98 -----------KRLWE----VKI-----PMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR------ 150 (325)
T ss_pred -----------hhhhh----hcC-----ccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE------
Confidence 01111 000 00000 0011457888889886655555 89999999999765443
Q ss_pred CCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccc-cceeEEEEccCC
Q 012535 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNG 353 (461)
Q Consensus 275 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~g 353 (461)
.+.+|.+.+.+++--... ..+++|+.||++|+||+++++. +..++....+ ..+..|. ..|.+++.+ .
T Consensus 151 --~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~----v~~ie~yk~~---~~lRp~~g~wigala~~--e 218 (325)
T KOG0649|consen 151 --EYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKH----VSMIEPYKNP---NLLRPDWGKWIGALAVN--E 218 (325)
T ss_pred --EEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccce----eEEeccccCh---hhcCcccCceeEEEecc--C
Confidence 578999999999985544 5799999999999999999875 3333332211 1222222 357777775 4
Q ss_pred CEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 354 ~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
.+|++|....+.+|+++. .++...|...... -.+.|. .+.+++++..+.|.-|.+.
T Consensus 219 dWlvCGgGp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 219 DWLVCGGGPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ceEEecCCCceeEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec
Confidence 599999888999999996 7777766543322 155664 4467778877889999886
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.8e-19 Score=165.33 Aligned_cols=282 Identities=14% Similarity=0.215 Sum_probs=209.1
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|..+|+|+.|...|.++++|+.|..++||...+.. ++....||+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----------------------~lAs~rGhs---------- 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----------------------CLASCRGHS---------- 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------hhccCCCCc----------
Confidence 55799999999999999999999999999999987765 667889999
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
+.|+.++.+ .++.++++++.|..|++|.+..+....++..+ .|.|. +++|+|-
T Consensus 233 --~ditdlavs--~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh--------tgavt-------aiafsP~-------- 285 (1113)
T KOG0644|consen 233 --GDITDLAVS--SNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH--------TGAVT-------AIAFSPR-------- 285 (1113)
T ss_pred --cccchhccc--hhhhhhhhcccCceEEEEecCCCchHHHHhcc--------cccee-------eeccCcc--------
Confidence 779999998 66788999999999999999999887777665 55666 7777773
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
.+.+.||++++|| .. .+ ......+........-+.++.|...+.-++++ .|+.-..|....
T Consensus 286 --------~sss~dgt~~~wd-~r-~~--~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~------ 347 (1113)
T KOG0644|consen 286 --------ASSSDDGTCRIWD-AR-LE--PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ------ 347 (1113)
T ss_pred --------ccCCCCCceEecc-cc-cc--ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhH------
Confidence 5678999999999 32 11 11100000001122456677788888888998 788888887652
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+..+...+.-+.++.+...+.+++-.+..+++|++.++.+ .+.+.++. ..+..+.+
T Consensus 348 --------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l----~H~l~ghs------------d~~yvLd~ 403 (1113)
T KOG0644|consen 348 --------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL----LHNLMGHS------------DEVYVLDV 403 (1113)
T ss_pred --------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchh----hhhhcccc------------cceeeeee
Confidence 1223333344444444335677788889999999999876 45555544 77999999
Q ss_pred ccCCCEEE-Eec-CCeEEEEEccCCCCCeeEEe-eccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 350 ARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 350 s~~g~~l~-s~~-d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+|-+..++ +++ ||...|||+-. +.+++.+. +|... .+.+||+||..++....-|.++|..
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~~gh~kl----------------~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKL----------------VDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeeccc-CCcceeeeccccee----------------eccccCCCCceEecCCCCCceEEec
Confidence 99666655 444 79999999985 77666554 44433 3889999999999988889999987
Q ss_pred cCCCC
Q 012535 427 CSEGS 431 (461)
Q Consensus 427 ~~~~~ 431 (461)
...++
T Consensus 467 ~gqs~ 471 (1113)
T KOG0644|consen 467 TGQSK 471 (1113)
T ss_pred cCCCc
Confidence 76553
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=5.8e-18 Score=137.10 Aligned_cols=167 Identities=12% Similarity=0.196 Sum_probs=130.9
Q ss_pred cccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCC-ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCe
Q 012535 230 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 306 (461)
..+..+++++.|+.- .+++.++ -|-+..|||++++.. .++. .+..|...|..++|...+.++||+.+.||.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeEEEeccCccceEEEecCCCc
Confidence 345578899999875 4556666 599999999997622 1221 466799999999999988789999999999
Q ss_pred EEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc-CCCEEEE-ecC-CeEEEEEccCCCCCeeEEeecc
Q 012535 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILS-RDY-MTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~g~~l~s-~~d-~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
+|++|+|..+.. .-.++.... ..+...++|++ |-+|+|+ +-| ..|.|-|++.+..++..+++|.
T Consensus 221 vRmFDLR~leHS---TIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 221 VRMFDLRSLEHS---TIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred EEEEEecccccc---eEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 999999986531 112222211 15688999998 5567777 445 8999999999899999999999
Q ss_pred CccccccccccCCCccceeeEEEecC-CCEEEEecCCCeEEEEecCCC
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~ 430 (461)
..++ .++|.|. ...|+++++|..+.+||+..-
T Consensus 288 a~VN---------------gIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 288 ASVN---------------GIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred cccc---------------ceEecCCCCceeeecCCcceEEEEecccc
Confidence 9885 8999997 468999999999999999854
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=3.4e-16 Score=141.61 Aligned_cols=259 Identities=11% Similarity=0.139 Sum_probs=156.8
Q ss_pred ceEEEEEeecCCCcEEEEEe-CCCeEEEEEcc-CCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 114 KINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
....++++ +++++|++++ .++.|.+|+++ .+.+........ .+. +..++++|+++.+
T Consensus 36 ~~~~l~~s--pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-------~~~-------p~~i~~~~~g~~l----- 94 (330)
T PRK11028 36 QVQPMVIS--PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-------PGS-------PTHISTDHQGRFL----- 94 (330)
T ss_pred CCccEEEC--CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-------CCC-------ceEEEECCCCCEE-----
Confidence 36778998 5677877764 68899999997 344322221110 011 2267899999985
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCcee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~ 269 (461)
+++...++.|.+|+ +..... ........ .+...+..++++|++++++++ .++.|.+||+++.+....
T Consensus 95 ------~v~~~~~~~v~v~~-~~~~g~--~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 95 ------FSASYNANCVSVSP-LDKDGI--PVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred ------EEEEcCCCeEEEEE-ECCCCC--CCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 33444589999999 532111 11111111 122446778899999988765 589999999985332211
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CCeEEEEECCCc--ccccccccccccccCCCccccccccccceeE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQS--ALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
.. ....... .......++|+|++ ++++++.. ++.|.+||+... .. ..+..+...... + .+......
T Consensus 164 ~~-~~~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~~~~p~~-----~-~~~~~~~~ 232 (330)
T PRK11028 164 QE-PAEVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEI--ECVQTLDMMPAD-----F-SDTRWAAD 232 (330)
T ss_pred cC-CCceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCE--EEEEEEecCCCc-----C-CCCcccee
Confidence 00 0000111 13446789999999 77776665 999999999742 21 112222111000 0 00123446
Q ss_pred EEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC-CCeEE
Q 012535 347 IKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFR 423 (461)
Q Consensus 347 l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~ 423 (461)
+.|+|+|++|++++ ++.|.+|++...+..+ .+..+...... ...+.++|||++|+++.. ++.|.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~------------p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTETQ------------PRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEecccc------------CCceEECCCCCEEEEEEccCCcEE
Confidence 89999999999975 4899999997533222 33333211100 137899999999987765 89999
Q ss_pred EEecC
Q 012535 424 VFGCS 428 (461)
Q Consensus 424 iw~~~ 428 (461)
+|+++
T Consensus 300 v~~~~ 304 (330)
T PRK11028 300 VYEID 304 (330)
T ss_pred EEEEc
Confidence 99885
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=3.6e-16 Score=131.13 Aligned_cols=238 Identities=13% Similarity=0.155 Sum_probs=162.6
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
...+..+.|+.+...|..|+.|| -++|+...... +.....+ . ..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----------------------~~~~~~~-~------------~~ 48 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----------------------CFSKDTE-G------------VS 48 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH----------------------hhcccCC-C------------eE
Confidence 45677888999999999999998 58888764321 1111111 1 34
Q ss_pred eEEEEEeecCCCcEEEEEeCC--CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 115 INKIRWCQSANSALYLLSTND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
|-.+-|+ ..+++..+.+ +.+++.+++.+..+........ -++..-+-+.
T Consensus 49 IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~------------------IL~VrmNr~R------- 99 (391)
T KOG2110|consen 49 IVEMLFS----SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS------------------ILAVRMNRKR------- 99 (391)
T ss_pred EEEeecc----cceeEEEecCCCceEEEEEcccCceEEEEecCCc------------------eEEEEEccce-------
Confidence 6677776 3366666544 4589999887766655444321 2233333333
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe---CCCeEEEEEccCCCCcee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~ 269 (461)
|+++-.+. |.||| +...+...... . ...+...+..+++++.+.+++.- ..|.|.+||+.+-+...
T Consensus 100 -----LvV~Lee~-IyIyd-I~~MklLhTI~---t-~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~- 167 (391)
T KOG2110|consen 100 -----LVVCLEES-IYIYD-IKDMKLLHTIE---T-TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN- 167 (391)
T ss_pred -----EEEEEccc-EEEEe-cccceeehhhh---c-cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-
Confidence 24444444 99999 65544322111 0 12345567677777777898873 58999999998554433
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCe-EEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
.+..|.+.+-+++|+++| .+||+++..|+ ||++.+.+++. ++.|.....+ ..|.+++
T Consensus 168 -------~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~k----l~eFRRG~~~----------~~IySL~ 225 (391)
T KOG2110|consen 168 -------TINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQK----LYEFRRGTYP----------VSIYSLS 225 (391)
T ss_pred -------EEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccE----eeeeeCCcee----------eEEEEEE
Confidence 456799999999999999 99999999997 78999999887 4444432211 5699999
Q ss_pred EccCCCEEEEecC-CeEEEEEccC
Q 012535 349 FARNGRHILSRDY-MTLKLWDINM 371 (461)
Q Consensus 349 ~s~~g~~l~s~~d-~~i~vwd~~~ 371 (461)
|+|++++|++.++ ++|.+|.+..
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999776 9999999874
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.9e-17 Score=134.00 Aligned_cols=224 Identities=14% Similarity=0.266 Sum_probs=158.4
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
++-+.|.|+.|.|++..||+-. |..|.+|++.....+ .+.+.. ..-.+|.
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~---vaev~s--------------s~s~e~~------------ 170 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI---VAEVLS--------------SESAEMR------------ 170 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch---heeecc--------------ccccccc------------
Confidence 4556899999999999998876 779999999876542 000000 0001122
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
...++-+|+|..+++.+++ ..|++++.||+++.+....
T Consensus 171 ~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~s----------------------------------------- 208 (370)
T KOG1007|consen 171 HSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNS----------------------------------------- 208 (370)
T ss_pred ceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcc-----------------------------------------
Confidence 4478889998777766655 4678999999876432110
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCceee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
+..+|...|..+.|+|+.+ +|++| +||.|++||.+..+.++.
T Consensus 209 -----------------------------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~- 252 (370)
T KOG1007|consen 209 -----------------------------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ- 252 (370)
T ss_pred -----------------------------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc-
Confidence 0157778899999999965 46666 899999999997776654
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccc-----ccccc--------cCCCccccc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-----LFEEQ--------EAPGTRSFF 337 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~ 337 (461)
.+.+|..+|+++.|+|...+++++|+.|..|.+|....-........ ..+.+ -..+....+
T Consensus 253 ------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 253 ------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred ------ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 68899999999999998778999999999999998754321100000 00000 111233467
Q ss_pred cccccceeEEEEccCCCEEEEe-c-CCeEEEEEcc
Q 012535 338 TEIIASISDIKFARNGRHILSR-D-YMTLKLWDIN 370 (461)
Q Consensus 338 ~~h~~~v~~l~~s~~g~~l~s~-~-d~~i~vwd~~ 370 (461)
..|...|++++||.-..+++++ + ||++.|=.+.
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 7899999999999977777764 5 6999887765
No 180
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.4e-17 Score=135.13 Aligned_cols=256 Identities=15% Similarity=0.210 Sum_probs=172.3
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
..|+.|+ ..|.++++|+.||.|.|||+.+....+.+..|..+ +. +++|+++|+.+
T Consensus 26 a~~~~Fs--~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p--------i~-------sl~WS~dgr~L-------- 80 (405)
T KOG1273|consen 26 AECCQFS--RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP--------IT-------SLCWSRDGRKL-------- 80 (405)
T ss_pred cceEEec--cCcceeeeeccCCcEEEEEccccchhhhhhccccc--------ee-------EEEecCCCCEe--------
Confidence 6899999 56889999999999999999998877766666443 33 88999999996
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCE-EEEe-CCCeEEEEEccCCCCceeeec
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
++++.|..+.+|| +.... +.+.+ ....+|....|+|.... .++. -+..-.+-++..+... +..
T Consensus 81 ----ltsS~D~si~lwD-l~~gs------~l~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp 145 (405)
T KOG1273|consen 81 ----LTSSRDWSIKLWD-LLKGS------PLKRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLP 145 (405)
T ss_pred ----eeecCCceeEEEe-ccCCC------ceeEE--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--ecc
Confidence 9999999999999 43322 22221 34578999999997433 3333 3444555555432211 110
Q ss_pred cCCCCCCC-CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 273 VKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 273 ~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
. .-.+ .+....+..|.+.| +++++|...|.+.+||..+.+. +..+.... ...|..+.|+.
T Consensus 146 ~---d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~----vas~rits-----------~~~IK~I~~s~ 206 (405)
T KOG1273|consen 146 K---DDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLEC----VASFRITS-----------VQAIKQIIVSR 206 (405)
T ss_pred C---CCccccccccccccccCCC-CEEEEecCcceEEEEecchhee----eeeeeech-----------heeeeEEEEec
Confidence 0 1111 12223345789998 9999999999999999988765 33333321 14689999999
Q ss_pred CCCEEEE-ecCCeEEEEEccC------CCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC-CCeEE
Q 012535 352 NGRHILS-RDYMTLKLWDINM------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFR 423 (461)
Q Consensus 352 ~g~~l~s-~~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~ 423 (461)
.|++|+. .+|..||.|+++. .+++- ....-...++++. + -+++|+.+|.|++.|+. ...++
T Consensus 207 ~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e-~~~K~qDvVNk~~---W-------k~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 207 KGRFLIINTSDRVIRTYEISDIDDEGRDGEVE-PEHKLQDVVNKLQ---W-------KKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred cCcEEEEecCCceEEEEehhhhcccCccCCcC-hhHHHHHHHhhhh---h-------hheeecCCccEEEeccccceeEE
Confidence 9999998 5689999999862 01111 0000111111111 1 27899999999987764 45799
Q ss_pred EEecCCCCccceeeccCC
Q 012535 424 VFGCSEGSAESTTLEASK 441 (461)
Q Consensus 424 iw~~~~~~~~~~~~~~~~ 441 (461)
||.-..|... .++++..
T Consensus 276 IWE~~~GsLV-KILhG~k 292 (405)
T KOG1273|consen 276 IWEKSIGSLV-KILHGTK 292 (405)
T ss_pred EEecCCccee-eeecCCc
Confidence 9999998766 5665554
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=3.5e-17 Score=132.66 Aligned_cols=257 Identities=11% Similarity=0.160 Sum_probs=176.2
Q ss_pred ccccccceEEEEEcCCC-----CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhh
Q 012535 31 EVQEVDIISAIEFDKSG-----DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-----~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (461)
.+.|.-+++.+.|.|+. ++|||.+ | .+|+|.+...+.. ..+...+..+.
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~-------------------~~~~~~L~~~k----- 145 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESR-------------------VELQSVLNNNK----- 145 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCc-------------------eehhhhhccCc-----
Confidence 35788999999999976 3677654 3 7999998753311 11122222221
Q ss_pred ccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc---eeEEeeeecCCCccCCCCCccccccccCcceeecC
Q 012535 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (461)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (461)
+.+...++++..|+. -+.+++.+++-|-+..|||++.+. .+..+-.|. ..|. .++|...
T Consensus 146 --ns~~~aPlTSFDWne-~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD--------KEV~-------DIaf~~~ 207 (364)
T KOG0290|consen 146 --NSEFCAPLTSFDWNE-VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD--------KEVY-------DIAFLKG 207 (364)
T ss_pred --ccccCCccccccccc-CCcceeEeecccCeEEEEEEeeccccceeeEEEecC--------ccee-------EEEeccC
Confidence 122337899999985 456799999999999999999873 233333332 2244 6778776
Q ss_pred CCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe--CCCeEEEE
Q 012535 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA--DDLRINLW 259 (461)
Q Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~--~d~~i~iw 259 (461)
+..+ +++.+.||.+|+|| ++..+-.... ..- .....+...++|++. .+++|+- +...|.+.
T Consensus 208 s~~~-----------FASvgaDGSvRmFD-LR~leHSTII---YE~-p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 208 SRDV-----------FASVGADGSVRMFD-LRSLEHSTII---YED-PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred ccce-----------EEEecCCCcEEEEE-ecccccceEE---ecC-CCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 6554 79999999999999 7654432211 110 111456778889876 4566663 67899999
Q ss_pred EccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc--ccccccccccccCCCccccc
Q 012535 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFF 337 (461)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 337 (461)
|++.....+. ++.+|.+.|+.++|.|..+..|++++.|..+.+||+.+... ...++..+.
T Consensus 272 DiR~P~tpva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~----------- 333 (364)
T KOG0290|consen 272 DIRVPCTPVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT----------- 333 (364)
T ss_pred EecCCCccee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-----------
Confidence 9997766553 68899999999999999889999999999999999976421 111111111
Q ss_pred cccccceeEEEEcc-CCCEEEEecCCeEEEE
Q 012535 338 TEIIASISDIKFAR-NGRHILSRDYMTLKLW 367 (461)
Q Consensus 338 ~~h~~~v~~l~~s~-~g~~l~s~~d~~i~vw 367 (461)
-.+.|+.+.|++ .+.+++.+..+.+.+-
T Consensus 334 --a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 334 --AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred --ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 126799999996 6678888776665543
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1e-16 Score=148.74 Aligned_cols=326 Identities=13% Similarity=0.124 Sum_probs=205.0
Q ss_pred EEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEE
Q 012535 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (461)
.-.||+|+++++....+ .|.||...++. +.+.+.+|. .++..+.
T Consensus 21 ~avfSnD~k~l~~~~~~-~V~VyS~~Tg~-----------------------~i~~l~~~~------------a~l~s~~ 64 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGN-FVKVYSTATGE-----------------------CITSLEDHT------------APLTSVI 64 (792)
T ss_pred ccccccCCcEEEEeeCC-EEEEEecchHh-----------------------hhhhccccc------------Cccceee
Confidence 45689999988877644 89999999887 456888998 8899999
Q ss_pred EeecCCC-cEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCC-----C--CCcc-ccccccC----cceeecCCCcc
Q 012535 120 WCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG-----N--GPIF-GSHVSAI----PKSYMANGGCG 186 (461)
Q Consensus 120 ~~p~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~--~~v~-~~~~~~~----~~~~~~~g~~~ 186 (461)
+.|.+.. .++.+++.||+|++||...+.+.+....+.+...... . ..+. +...... +....-.+...
T Consensus 65 ~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~ 144 (792)
T KOG1963|consen 65 VLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF 144 (792)
T ss_pred ecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeee
Confidence 9986654 5778999999999999999888777665443211000 0 0000 0000000 00000001100
Q ss_pred ccc-ccCCCC--------Ccc---------ccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEE
Q 012535 187 ERN-FGCASN--------DSS---------FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (461)
Q Consensus 187 ~~~-~~~~~~--------~~~---------~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 248 (461)
.+. ...... +.. .....+..+.+|+ +.. .....+.+.....|...+++.+++|+++++
T Consensus 145 ~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~-v~~---~~~~~~~~~~~~~Htf~~t~~~~spn~~~~ 220 (792)
T KOG1963|consen 145 VLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYF-VPK---HTKHTSSRDITVHHTFNITCVALSPNERYL 220 (792)
T ss_pred EeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEE-ecc---cceeeccchhhhhhcccceeEEeccccceE
Confidence 000 000000 011 1112223444444 211 112223333335677778999999999999
Q ss_pred EEe-CCCeEEEEEccC-CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 249 ISA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 249 ~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
++| .||+|.+|.--. ...... +..+..|.+.|++++|+++| .+|++|+..|.+.+|.+.+++. .-++
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~~t-----~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qfLP 289 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDSET-----CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QFLP 289 (792)
T ss_pred EEeccCCcEEEEecccccccccc-----ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----cccc
Confidence 999 799999996442 122211 12467799999999999999 9999999999999999988762 1122
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEE-ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEE
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
.- .++|..+.++||+.+.+. ..|+.|.+-.... -.....+.+-......... ....+ .+.++
T Consensus 290 RL------------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~--~~~~l--~t~~~ 352 (792)
T KOG1963|consen 290 RL------------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKT--RPQSL--TTGVS 352 (792)
T ss_pred cc------------CCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccc--ccccc--ceeEE
Confidence 11 268999999999987776 5689999988753 3444444443332110000 00011 14788
Q ss_pred EecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 406 LSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
++|.-+.++-.+..|.|.+||+.+.+.+
T Consensus 353 idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 353 IDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred EcCCCCceeecCCCceEEEEecccccee
Confidence 9997778888899999999999987654
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=1.9e-17 Score=148.00 Aligned_cols=260 Identities=17% Similarity=0.223 Sum_probs=177.9
Q ss_pred CCCEEEE--eecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeec
Q 012535 46 SGDHLAT--GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (461)
Q Consensus 46 ~g~~l~t--g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~ 123 (461)
+...+|+ .+..|.|-||++..-..+ |+...-..+.+.. |+.+.|.|
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrL-----------------PDgv~p~l~Ngt~--------------vtDl~WdP- 637 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRL-----------------PDGVMPGLFNGTL--------------VTDLHWDP- 637 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCC-----------------CcccccccccCce--------------eeecccCC-
Confidence 3445554 355789999998765433 3333333344444 99999998
Q ss_pred CCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccC
Q 012535 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (461)
Q Consensus 124 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (461)
-|...|++++.||.|++|.+..+.+.....
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-------------------------------------------------- 667 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGLPENEM-------------------------------------------------- 667 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCCCcccC--------------------------------------------------
Confidence 456799999999999999987654321100
Q ss_pred CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCC
Q 012535 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (461)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (461)
.+... +.+|...|.++.|+|- .+.|+++ .|.+|++||+.+..... .+.+|
T Consensus 668 -------------------tPe~~-lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~--------~l~gH 719 (1012)
T KOG1445|consen 668 -------------------TPEKI-LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS--------RLVGH 719 (1012)
T ss_pred -------------------Cccee-eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh--------eeccC
Confidence 01111 3788899999999996 5677777 89999999999766553 57899
Q ss_pred CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEE-ec
Q 012535 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RD 360 (461)
Q Consensus 282 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s-~~ 360 (461)
.+.|..++|+|+| +.+|+.+.||+|++|..++++.- ++.-.+... ..-..+.|.-||+++++ |-
T Consensus 720 tdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~p---v~Eg~gpvg-----------tRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQP---VYEGKGPVG-----------TRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred cCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCc---cccCCCCcc-----------CcceeEEEEecCcEEEEecc
Confidence 9999999999999 99999999999999999887631 222221110 22346778889999887 42
Q ss_pred ----CCeEEEEEccCC-CCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-EEEEecCCCeEEEEecCCCCccc
Q 012535 361 ----YMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAES 434 (461)
Q Consensus 361 ----d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~ 434 (461)
...|.+||..+- ..++.+..-...... +--.+.+|.. ++++|-.|..|++|.+-......
T Consensus 785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~--------------LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP--------------LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYL 850 (1012)
T ss_pred cccchhhhhhhhhhhccCCcceeeeecccCcc--------------ccccccCCCceEEEecCCCceEEEEEecCCCcee
Confidence 378999998752 244444322221110 0122445544 67788899999999998776665
Q ss_pred eeeccCCCCC
Q 012535 435 TTLEASKNPM 444 (461)
Q Consensus 435 ~~~~~~~~~~ 444 (461)
+.+..+..++
T Consensus 851 lpl~~f~sp~ 860 (1012)
T KOG1445|consen 851 LPLAPFMSPV 860 (1012)
T ss_pred eecccccCCC
Confidence 6666555544
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1.8e-16 Score=146.69 Aligned_cols=262 Identities=11% Similarity=0.104 Sum_probs=168.0
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee--EEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.++.|+|. +..+++.|+.+|.|.+||++.+... ......... ....+. .+.|..+...
T Consensus 243 s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~s----h~~~v~-------~vvW~~~~~~----- 305 (555)
T KOG1587|consen 243 SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVS----HSEPVT-------AVVWLQNEHN----- 305 (555)
T ss_pred CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCccccccccc----CCcCeE-------EEEEeccCCC-----
Confidence 66999999984 4678899999999999999876542 111111111 112222 3344332221
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeee-----cccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-----HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~ 263 (461)
..+++++.||.|..|+ +..........+..... ......+++++|.+. ...|+.| ++|.|.--+...
T Consensus 306 -----~~f~s~ssDG~i~~W~-~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 306 -----TEFFSLSSDGSICSWD-TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred -----CceEEEecCCcEeeee-ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 3358999999999998 43322211111111110 122346788999876 5567777 899998744332
Q ss_pred CCCceeeeccCC-CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECC-CcccccccccccccccCCCccccccccc
Q 012535 264 SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 264 ~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
...... .-.++ ..+..|.+.|+++.++|-+..+|++++ |-+++||... .... +..+..+.
T Consensus 380 ~~~~~~-~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P----l~~~~~~~------------ 441 (555)
T KOG1587|consen 380 YTPAPE-VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP----LLSLDSSP------------ 441 (555)
T ss_pred Cccccc-ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc----chhhhhcc------------
Confidence 222210 00111 245568999999999999867777766 9999999976 3322 44444443
Q ss_pred cceeEEEEccCCC-EEEEec-CCeEEEEEccC-CCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 342 ASISDIKFARNGR-HILSRD-YMTLKLWDINM-DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 342 ~~v~~l~~s~~g~-~l~s~~-d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
..|++++|||.-. .+++++ +|.|.+||+.. ...++.....+.... ..+.|++.|+.|++|..
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavGd~ 506 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVGDA 506 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccc---------------ceeecCCCCcEEEEecC
Confidence 5699999999654 555565 59999999974 234555554442222 37889999999999999
Q ss_pred CCeEEEEecCCC
Q 012535 419 SNLFRVFGCSEG 430 (461)
Q Consensus 419 dg~i~iw~~~~~ 430 (461)
.|.+++|++...
T Consensus 507 ~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 507 NGTTHILKLSES 518 (555)
T ss_pred CCcEEEEEcCch
Confidence 999999999643
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=146.47 Aligned_cols=184 Identities=21% Similarity=0.289 Sum_probs=134.5
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
+..+|++.|.|+.|+.+|.+|++|+.|-.+.|||....+. +...-.+|.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt--------- 93 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT--------- 93 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc---------
Confidence 4568999999999999999999999999999999875442 223346888
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.++.|.|..++..+++|+.|..|+++|+...+....-. |
T Consensus 94 ---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~-----------------------------~------ 135 (758)
T KOG1310|consen 94 ---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH-----------------------------G------ 135 (758)
T ss_pred ---cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc-----------------------------C------
Confidence 77999999998888999999999999999987533111000 0
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC-CEEEEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
..-.++. ...|...|..|+-.|++ +.+.++ +||+|+-+|++....+
T Consensus 136 -------------~~~~~~~-------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 136 -------------MEETTRC-------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred -------------ccchhhh-------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 0001111 25788889999999987 677787 8999999999854333
Q ss_pred eeeecc--CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC
Q 012535 268 FNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (461)
Q Consensus 268 ~~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (461)
..-.+. ....+....-...+++.+|..+.+|++|+.|-..++||.+.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 211000 00011112234679999999989999999999999999654
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-16 Score=152.57 Aligned_cols=293 Identities=13% Similarity=0.166 Sum_probs=169.3
Q ss_pred cCCceeeeccccccCCcccccccccceEEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccc
Q 012535 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (461)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
..+..|+..- .. .....+|...|..++.++. +.++++|+.||+|++|++......+. .+
T Consensus 1029 ~p~~gW~p~G---~l-VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~----------------s~ 1088 (1431)
T KOG1240|consen 1029 SPPPGWNPRG---IL-VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG----------------SA 1088 (1431)
T ss_pred CCCCCCCccc---eE-eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc----------------ee
Confidence 3346687663 22 2245679999999998875 48999999999999999875332100 01
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
+...++..-. .++.++..+ ++++.+|+++.||.|++.+++....................|.+..+
T Consensus 1089 rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m 1154 (1431)
T KOG1240|consen 1089 RSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM 1154 (1431)
T ss_pred eeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe
Confidence 1111122112 568888888 56779999999999999999863222221111111111112222211
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
. ++....+ + ..++.+...+.|..|| +.........+ ..-..+.|++++.+|.+++++.
T Consensus 1155 ~------a~~~~~~---------S-~~lvy~T~~~~iv~~D-~r~~~~~w~lk-----~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1155 H------AFTAIVQ---------S-HVLVYATDLSRIVSWD-TRMRHDAWRLK-----NQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred e------ccccccc---------c-eeEEEEEeccceEEec-chhhhhHHhhh-----cCccccceeEEEecCCceEEEE
Confidence 1 1111111 0 2468888899999999 43222111111 1233478999999999999999
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCC--CeEEE-Ee-cCCeEEEEECCCccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAY-SS-SKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l~~-~~-~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
| ..|.+.+||++-. ....-+ . .++..+++.+..+|..+ ...++ ++ ..+.|.+|++.++.. ..++
T Consensus 1213 Gts~G~l~lWDLRF~-~~i~sw-----~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~----~~vl 1281 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFR-VPILSW-----E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR----QTVL 1281 (1431)
T ss_pred ecCCceEEEEEeecC-ceeecc-----c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc----eEEE
Confidence 9 8999999999943 333221 1 22447788777776542 34444 44 578899999998843 1222
Q ss_pred ccccCCCccc-------cccccccceeEEEEccCCCEEEE-ecCCeEEEEEccC
Q 012535 326 EEQEAPGTRS-------FFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINM 371 (461)
Q Consensus 326 ~~~~~~~~~~-------~~~~h~~~v~~l~~s~~g~~l~s-~~d~~i~vwd~~~ 371 (461)
-......... ....+.-....+.+..-+.++++ |+|..|+.||...
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 2110000000 00011122223333333445555 5689999999875
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2e-17 Score=139.50 Aligned_cols=226 Identities=13% Similarity=0.236 Sum_probs=163.9
Q ss_pred ccccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.-+|+++|..++|+| +...||+|+.|-+|.||++..+.... +-..+...|.+|.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~----------------~ltepvv~L~gH~--------- 131 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR----------------DLTEPVVELYGHQ--------- 131 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc----------------CcccceEEEeecc---------
Confidence 347999999999999 66799999999999999998765431 1224667889999
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.-|+|+|.. .+.|++++.|.+|.+||+.+++....+. + ...++ ++.|+.+|..+
T Consensus 132 ---rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~l~---h------pd~i~-------S~sfn~dGs~l--- 188 (472)
T KOG0303|consen 132 ---RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALITLD---H------PDMVY-------SMSFNRDGSLL--- 188 (472)
T ss_pred ---eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeeecC---C------CCeEE-------EEEeccCCcee---
Confidence 889999999864 4689999999999999999998655544 2 22344 88999999985
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccccc-ceeeEEeCCCCCEEEEe----CCCeEEEEEccCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA----DDLRINLWNLEIS 264 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~----~d~~i~iwd~~~~ 264 (461)
++.+.|..|++|| ....+.. ..- .+|.+ ....+.|-.++.++.+| ++..+-+||..+.
T Consensus 189 ---------~TtckDKkvRv~d-pr~~~~v------~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 189 ---------CTTCKDKKVRVID-PRRGTVV------SEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred ---------eeecccceeEEEc-CCCCcEe------eec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence 9999999999999 3332221 111 34433 23445577888877776 4899999998876
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEE-EEecCCeEEEEECCCcccccccccccccc
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
+....+. .+. .+..|.---|.|+. .+++ +|-.|+.||.|.+......-.++.+|...
T Consensus 252 ~eP~~~~-----elD-tSnGvl~PFyD~dt-~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 252 EEPIALQ-----ELD-TSNGVLLPFYDPDT-SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred cCcceeE-----Eec-cCCceEEeeecCCC-CEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6654432 222 34456666688887 5555 55569999999998876443334455443
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.7e-16 Score=145.07 Aligned_cols=319 Identities=13% Similarity=0.170 Sum_probs=198.3
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|+-.++|.++||+++++|+|..||.|.+|.--... .+-...+.++-|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-------------------~~~~t~t~lHWH~---------- 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-------------------DDSETCTLLHWHH---------- 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-------------------cccccceEEEecc----------
Confidence 45688889999999999999999999999999744311 0112345577776
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|++++|+ .+|.+|++|+..|.+-+|.+.+++.+.+... .+.+. .+.++|++...
T Consensus 252 --~~V~~L~fS--~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL---------gs~I~-------~i~vS~ds~~~---- 307 (792)
T KOG1963|consen 252 --DEVNSLSFS--SDGAYLLSGGREGVLVLWQLETGKKQFLPRL---------GSPIL-------HIVVSPDSDLY---- 307 (792)
T ss_pred --cccceeEEe--cCCceEeecccceEEEEEeecCCCccccccc---------CCeeE-------EEEEcCCCCeE----
Confidence 669999999 6789999999999999999999883333222 22344 67888998874
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceee----EeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCR----RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
.....|..|.+.. ..+.+........ ........+-.+.++++|..+.++-. ..|.|.+||+-+..
T Consensus 308 --------sl~~~DNqI~li~-~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 308 --------SLVLEDNQIHLIK-ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred --------EEEecCceEEEEe-ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 7777888888866 3222221111100 00012234556778889965555554 89999999998776
Q ss_pred CceeeeccCCCCCC---CCCcceEEEEEeCCCCCeEEEEec--------CC--eEEEEECCCcccccccccccccccCCC
Q 012535 266 QSFNIVDVKPANME---DLTEVITSAEFHPTHCNMLAYSSS--------KG--SIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 266 ~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
...++......... .+...++.++.+-.| .++++.-. || .+++|-......-.......
T Consensus 379 ~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g-s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I------- 450 (792)
T KOG1963|consen 379 TIYKLQVCDENYSDGDVNIQVGITAVARSRFG-SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI------- 450 (792)
T ss_pred eeeeEEEEeecccCCcceeEEeeeeehhhccc-eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE-------
Confidence 66544322211111 234567788888887 88888643 33 46778765543211101111
Q ss_pred ccccccccccceeEEEEcc-CCC-EEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 333 TRSFFTEIIASISDIKFAR-NGR-HILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~-~g~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
...|...+...++.+ ... .++++ .||.++||-+..+.+... ....+.-.....|+...+ ..++|+.|
T Consensus 451 ----~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k---~~s~W~c~~i~sy~k~~i---~a~~fs~d 520 (792)
T KOG1963|consen 451 ----NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK---KSSNWTCKAIGSYHKTPI---TALCFSQD 520 (792)
T ss_pred ----ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc---CccceEEeeeeccccCcc---cchhhcCC
Confidence 112335555555554 222 56665 579999999853221110 011111111111222222 48999999
Q ss_pred CCEEEEecCCCeEEEEecCCC
Q 012535 410 GGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 410 ~~~l~s~~~dg~i~iw~~~~~ 430 (461)
|..|+. +.|+.|.+||..+.
T Consensus 521 Gslla~-s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 521 GSLLAV-SFDDTITIWDYDTK 540 (792)
T ss_pred CcEEEE-ecCCEEEEecCCCh
Confidence 976654 56789999999984
No 189
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.7e-16 Score=131.04 Aligned_cols=293 Identities=15% Similarity=0.157 Sum_probs=182.0
Q ss_pred EEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEE
Q 012535 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (461)
-.+|||+|+|+|+.+.- .+.|-|..+-+. ...|..- +.|..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-----------------------~qlf~cl-------------dki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-----------------------HQLFLCL-------------DKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH-----------------------HHHHHHH-------------HHhhhee
Confidence 46899999999999866 788888765432 1111111 4588899
Q ss_pred EeecCCCcEEEEE-eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCcc
Q 012535 120 WCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (461)
Q Consensus 120 ~~p~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (461)
|. .|..+++.+ ..|+.|.+|++...+....+.... ..+. ++.|+|+|+.+ +
T Consensus 56 W~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~--------agls-------~~~WSPdgrhi-----------L 107 (447)
T KOG4497|consen 56 WK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ--------AGLS-------SISWSPDGRHI-----------L 107 (447)
T ss_pred ee--ccceeeeeeeeccceEEEEEeecceeEEEeccCC--------Ccce-------eeeECCCcceE-----------e
Confidence 98 555566655 688999999998876655444321 1222 67999999876 6
Q ss_pred ccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC-----------------------
Q 012535 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD----------------------- 253 (461)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d----------------------- 253 (461)
.+...+-.|.+|. +.+..... +.-....+..++|+|+|++.+.+ .|
T Consensus 108 ~tseF~lriTVWS-L~t~~~~~--------~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT 178 (447)
T KOG4497|consen 108 LTSEFDLRITVWS-LNTQKGYL--------LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT 178 (447)
T ss_pred eeecceeEEEEEE-eccceeEE--------ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc
Confidence 7888899999999 54332211 12223445778888888776544 12
Q ss_pred ------------CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccc
Q 012535 254 ------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (461)
Q Consensus 254 ------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (461)
+.+.+||---.-... ...-.-.+..++|+|.+ ++|+.|+.|+.+|+.+--+.+...+.
T Consensus 179 ~DltgieWsPdg~~laVwd~~Leykv~---------aYe~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 179 IDLTGIEWSPDGNWLAVWDNVLEYKVY---------AYERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred ccccCceECCCCcEEEEecchhhheee---------eeeeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhh
Confidence 222233321100000 11123567899999998 99999999999988653322111000
Q ss_pred cc---------------------------cc-----ccccCCCc------------c------ccccccccceeEEEEcc
Q 012535 322 SK---------------------------LF-----EEQEAPGT------------R------SFFTEIIASISDIKFAR 351 (461)
Q Consensus 322 ~~---------------------------~~-----~~~~~~~~------------~------~~~~~h~~~v~~l~~s~ 351 (461)
.+ .| +.+..+.. . .-+..-...+.-++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 00 00000000 0 01111234678899999
Q ss_pred CCCEEEEecC---CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 352 NGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 352 ~g~~l~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
|..|+++-+| +.+.+||+++ .+....+. ...++ ....|+|....|+.+....++++|...
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLi-Qk~pi---------------raf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQN-LKLHAVLI-QKHPI---------------RAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred CceEEeeecCCCCceEEEEechh-hhhhhhhh-hccce---------------eEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 9999999764 8999999985 44433332 22222 489999998888887777889999887
Q ss_pred CCCcc
Q 012535 429 EGSAE 433 (461)
Q Consensus 429 ~~~~~ 433 (461)
.-...
T Consensus 392 g~~~V 396 (447)
T KOG4497|consen 392 GPRVV 396 (447)
T ss_pred CceEE
Confidence 54333
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=5.3e-16 Score=139.65 Aligned_cols=241 Identities=15% Similarity=0.189 Sum_probs=166.1
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccccc-----CCCcchh
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-----SHEPEFD 104 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~~~ 104 (461)
...+|.+.|+|++|+.||+.+|+|+.|..|.+|+.+-. |..+..+....+.+.|+|-...+.+-. -..++-.
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK 124 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK 124 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence 35689999999999999999999999999999986543 244556666777888888544333211 1111111
Q ss_pred hccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 105 ~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
.+..-.....|.+.+|. .||++++.|-.+|+|.+-+-...+...+...... +.+++ +++|+|...
T Consensus 125 ~V~K~kss~R~~~CsWt--nDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~------Nspiw-------si~~~p~sg 189 (1081)
T KOG1538|consen 125 SVSKHKSSSRIICCSWT--NDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS------NSPIW-------SICWNPSSG 189 (1081)
T ss_pred hHHhhhhheeEEEeeec--CCCcEEEEeccCceEEeecCCCCcceEEeCCCCC------CCCce-------EEEecCCCC
Confidence 11112344678889998 8899999999999999987554433333221111 34455 778887654
Q ss_pred cccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccC
Q 012535 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (461)
. -..+.+++.....++.+|. +..... .+. +.-.....|+.+.++|++++.| .|+.+.+|-.+
T Consensus 190 ~-------G~~di~aV~DW~qTLSFy~-LsG~~I---gk~-----r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~- 252 (1081)
T KOG1538|consen 190 E-------GRNDILAVADWGQTLSFYQ-LSGKQI---GKD-----RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD- 252 (1081)
T ss_pred C-------CccceEEEEeccceeEEEE-ecceee---ccc-----ccCCCCchhheeccCCcEEEEccCCCceEEEeec-
Confidence 2 2235567777778888777 322111 111 2223456789999999999998 89999999755
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (461)
+-.. .++.....+|+.++..|++ +.++.|+.||+|..|++-.
T Consensus 253 GvrL--------GTvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 253 GVRL--------GTVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CeEE--------eeccccceeEEEEEEccCC-ceEEEEEccCeeehhhhHH
Confidence 2222 1344567899999999999 9999999999999998653
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=1.2e-14 Score=137.23 Aligned_cols=292 Identities=21% Similarity=0.353 Sum_probs=202.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|...|.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~--------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD--------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence 457899999999999999999999999999999876531 1223333220
Q ss_pred cccceEEEEEeecCCCc-EEEEEe-CCCeEEEEEccC-CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 111 IEEKINKIRWCQSANSA-LYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~-~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
..+..+.+. .+++. .++..+ .|+.+.+|+... .........+. ..+. .++|+|+++.+
T Consensus 110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--------~~v~-------~~~~~~~~~~~- 170 (466)
T COG2319 110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS--------ESVT-------SLAFSPDGKLL- 170 (466)
T ss_pred --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc--------ccEE-------EEEECCCCCEE-
Confidence 246777774 35555 455544 499999999987 44444444332 2232 67899999864
Q ss_pred ccccCCCCCccccccC-CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCC
Q 012535 188 RNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~ 264 (461)
+.++. ++.+++|+ +.. ...... ..+|...|.+++|+|++. .++++ .|+.|++||....
T Consensus 171 -----------~~~~~~~~~~~~~~-~~~------~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 171 -----------ASGSSLDGTIKLWD-LRT------GKPLST-LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred -----------EecCCCCCceEEEE-cCC------CceEEe-eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 66665 99999999 432 222223 266899999999999998 55564 7999999987733
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
..... .+.+|.... ...|+|++ ..+++++.|+.+++||++..... +..+.. |...+
T Consensus 232 ~~~~~-------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~------------~~~~v 287 (466)
T COG2319 232 KLLRS-------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTLSG------------HSSSV 287 (466)
T ss_pred cEEee-------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEEec------------CCccE
Confidence 32221 245566654 33899998 89999999999999999876531 111122 33789
Q ss_pred eEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEe--eccCccccccccccCCCccceeeEEEecCCCEEEEe-cCCC
Q 012535 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSN 420 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg 420 (461)
.++.|.|++..+++++ |+.+.+||... ........ .|...+ ..+.|.+++..++.+ ..|+
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCC
Confidence 9999999888888854 57899998875 44444444 555422 377773333455555 6889
Q ss_pred eEEEEecCCCC
Q 012535 421 LFRVFGCSEGS 431 (461)
Q Consensus 421 ~i~iw~~~~~~ 431 (461)
.+.+|++....
T Consensus 352 ~~~~~~~~~~~ 362 (466)
T COG2319 352 TIRLWDLRTGK 362 (466)
T ss_pred cEEeeecCCCc
Confidence 99999998775
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=8.1e-16 Score=147.48 Aligned_cols=289 Identities=16% Similarity=0.212 Sum_probs=187.3
Q ss_pred ccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee-EEeeeecCCCccC
Q 012535 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAA 162 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~ 162 (461)
..|+|.+..++.++.|. ..|..++.++ +.+.+|++|+.||+|++|+.+.-... .....
T Consensus 1032 ~gW~p~G~lVAhL~Ehs------------~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS-------- 1090 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLHEHS------------SAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS-------- 1090 (1431)
T ss_pred CCCCccceEeehhhhcc------------ccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeee--------
Confidence 34577888888888888 7788999885 44579999999999999998743211 11000
Q ss_pred CCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCc-cccceeeEeeeccccccee-eEE
Q 012535 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-NLVAGCRRIYAHAHDYHIN-SIS 240 (461)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~v~-~i~ 240 (461)
.+.|++.+.....+..+...+.++.++.||.|++.+ +..... .....+.+.......+.+. .-+
T Consensus 1091 -------------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~-id~~~~~~~~~~~~ri~n~~~~g~vv~m~a 1156 (1431)
T KOG1240|consen 1091 -------------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR-IDHYNVSKRVATQVRIPNLKKDGVVVSMHA 1156 (1431)
T ss_pred -------------eEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE-ccccccccceeeeeecccccCCCceEEeec
Confidence 345666666666666677777789999999999988 544211 1122222222111222232 333
Q ss_pred eCCC-CC-EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 241 NNSD-GE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 241 ~~~~-~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
|... +. .++.+ ..+.|..||++........ ......+.|++++.+|.+ .++++|+..|.+.+||+|-+..
T Consensus 1157 ~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1157 FTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVP 1229 (1431)
T ss_pred ccccccceeEEEEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCce
Confidence 4332 33 56666 7899999999866544432 233356789999999998 8999999999999999998765
Q ss_pred ccccccccccccCCCccccccccccceeEEEEcc---CCCEEEEe-c-C-CeEEEEEccCCCCCeeEEeeccCccccccc
Q 012535 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSR-D-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~g~~l~s~-~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (461)
. .....+. ..+++.+..+| .....+++ . . +.|.+|++.+ +....++....+. ..+..
T Consensus 1230 i----~sw~~P~-----------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~ 1292 (1431)
T KOG1240|consen 1230 I----LSWEHPA-----------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSY 1292 (1431)
T ss_pred e----ecccCcc-----------cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhh
Confidence 2 3322221 15677777776 33466654 3 3 8999999996 6666666554221 11221
Q ss_pred cccC-----CCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 392 LYEN-----DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 392 ~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
.... ........+.+..-+.++.+|+.|..|+.||....+
T Consensus 1293 ~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1293 ALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred hcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 1111 111122245555567789999999999999998654
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=7.7e-16 Score=126.83 Aligned_cols=249 Identities=11% Similarity=0.159 Sum_probs=167.2
Q ss_pred cccceEEEEEc-------CCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccC--CCcchh
Q 012535 34 EVDIISAIEFD-------KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS--HEPEFD 104 (461)
Q Consensus 34 h~~~V~~~~~s-------~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~~ 104 (461)
....|...+|= |+..++|+.+.+.-|++||.-+++.. ..+.+ |..|
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr-----------------------aSy~~ydh~de-- 157 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR-----------------------ASYRAYDHQDE-- 157 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc-----------------------cchhhhhhHHh--
Confidence 45667777774 67789999999999999999888643 22222 2211
Q ss_pred hccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEc-cCCceeEEeeeecCCCccCCCCCccccccccCcceeecCC
Q 012535 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (461)
Q Consensus 105 ~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (461)
-....+++|+ +||.+|++| ..+.|+++|+ +.|+.........+. +....+.+. +++|+|..
T Consensus 158 -------~taAhsL~Fs--~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~-k~gq~giis-------c~a~sP~~ 219 (406)
T KOG2919|consen 158 -------YTAAHSLQFS--PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGIIS-------CFAFSPMD 219 (406)
T ss_pred -------hhhheeEEec--CCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcc-cccccceee-------eeeccCCC
Confidence 0335789999 678777665 5678999999 445432222211110 111122233 67888876
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEc
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNL 261 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~ 261 (461)
... ++.++....+-||. ... ..+... +.+|.+.|+.++|.++|+.|.+| .|-.|..||+
T Consensus 220 ~~~-----------~a~gsY~q~~giy~----~~~---~~pl~l-lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 220 SKT-----------LAVGSYGQRVGIYN----DDG---RRPLQL-LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred Ccc-----------eeeecccceeeeEe----cCC---CCceee-ecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 532 48888888888876 221 222333 37999999999999999999998 5999999999
Q ss_pred cCCCCceeeeccCCCCCCCCCc-ceE--EEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccc
Q 012535 262 EISNQSFNIVDVKPANMEDLTE-VIT--SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (461)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~-~v~--~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (461)
+..+.++. .+..|.+ .-. -....|++ ++|++|+.||.|++||+..... .+..+..+
T Consensus 281 R~~~~pv~-------~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn---~~sv~~~~---------- 339 (406)
T KOG2919|consen 281 RYSRDPVY-------ALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN---EVSVTGNY---------- 339 (406)
T ss_pred hhccchhh-------hhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC---cccccccc----------
Confidence 97665542 3444544 222 34456888 9999999999999999987321 13333333
Q ss_pred ccccceeEEEEccCCCEEEEecCCeEEEE
Q 012535 339 EIIASISDIKFARNGRHILSRDYMTLKLW 367 (461)
Q Consensus 339 ~h~~~v~~l~~s~~g~~l~s~~d~~i~vw 367 (461)
...++.++++|--..+++++...+.-+
T Consensus 340 --sd~vNgvslnP~mpilatssGqr~f~~ 366 (406)
T KOG2919|consen 340 --SDTVNGVSLNPIMPILATSSGQRIFKY 366 (406)
T ss_pred --cccccceecCcccceeeeccCceeecC
Confidence 367999999999778887765444443
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=6.1e-15 Score=133.49 Aligned_cols=265 Identities=10% Similarity=0.104 Sum_probs=158.6
Q ss_pred ccccccceEEEEEcCCCCEEEEee-cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.+.+.+....++++|++++|++++ .++.|.+|++...... ....... ..
T Consensus 30 ~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--------------------~~~~~~~-~~--------- 79 (330)
T PRK11028 30 VVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--------------------TFAAESP-LP--------- 79 (330)
T ss_pred EEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce--------------------EEeeeec-CC---------
Confidence 334456678899999999887765 5789999998632111 0111111 11
Q ss_pred ccccceEEEEEeecCCCcEEEEEe-CCCeEEEEEccCC-ceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
.....++|+ ++++++++++ .++.|.+|++++. ........... . ..+..++++|+|+.+
T Consensus 80 ---~~p~~i~~~--~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~------~-------~~~~~~~~~p~g~~l- 140 (330)
T PRK11028 80 ---GSPTHISTD--HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG------L-------EGCHSANIDPDNRTL- 140 (330)
T ss_pred ---CCceEEEEC--CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC------C-------CcccEeEeCCCCCEE-
Confidence 235788998 5677888775 5899999999742 22111110000 0 011166889999886
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-CCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~~~~ 265 (461)
+++...++.|.+|| +..... ...................++|+|++++++++ . ++.|.+|+++...
T Consensus 141 ----------~v~~~~~~~v~v~d-~~~~g~-l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~ 208 (330)
T PRK11028 141 ----------WVPCLKEDRIRLFT-LSDDGH-LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH 208 (330)
T ss_pred ----------EEeeCCCCEEEEEE-ECCCCc-ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 45667789999999 543111 10000000001112446789999999999887 4 9999999997422
Q ss_pred Cceee---eccCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cCCeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 266 QSFNI---VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 266 ~~~~~---~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
..... +...|.... +......+.++|++ ++++++. .++.|.+|++.........+......
T Consensus 209 ~~~~~~~~~~~~p~~~~-~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~------------- 273 (330)
T PRK11028 209 GEIECVQTLDMMPADFS-DTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE------------- 273 (330)
T ss_pred CCEEEEEEEecCCCcCC-CCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-------------
Confidence 11111 111111111 22234578999999 7777775 47899999986543211111111111
Q ss_pred cceeEEEEccCCCEEEEec--CCeEEEEEccC
Q 012535 342 ASISDIKFARNGRHILSRD--YMTLKLWDINM 371 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~ 371 (461)
.....+.|+|+|++|++++ +++|.+|+++.
T Consensus 274 ~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 1345789999999999865 48999999863
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=2.8e-15 Score=123.45 Aligned_cols=226 Identities=13% Similarity=0.198 Sum_probs=161.6
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
.++|+|.+|++|+..+|++..+..|.||.....+ -++...++..|. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------~w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------LWEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------------CceeceehhhhC------------cc
Confidence 4789999999999999999999999999987654 245667788888 77
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEc-cCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
|++|+|.|. .+.|++++.|+.-.+|.. ..++.+..+.
T Consensus 58 vtgvdWap~--snrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDWAPK--SNRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEeecCC--CCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 999999964 559999999999999987 4444333221
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+..+...++++.|+|.++.|++| ....|.+|-++..+.-..-
T Consensus 96 -----------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs-- 138 (361)
T KOG1523|consen 96 -----------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS-- 138 (361)
T ss_pred -----------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh--
Confidence 13445678899999999999999 6888999988744322100
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccc-------ccccccccee
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS-------FFTEIIASIS 345 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~ 345 (461)
| ..-..+...|+++.|+|++ -+|++|+.|+..|++..--..... -+.....+.+. .+....+.+.
T Consensus 139 -K-hikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vde-----kpap~pWgsk~PFG~lm~E~~~~ggwvh 210 (361)
T KOG1523|consen 139 -K-HIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDE-----KPAPTPWGSKMPFGQLMSEASSSGGWVH 210 (361)
T ss_pred -h-hhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeecccc-----CCCCCCCccCCcHHHHHHhhccCCCcee
Confidence 0 0112367889999999998 899999999999998643221100 00000001111 1112237899
Q ss_pred EEEEccCCCEEEE-ecCCeEEEEEccCCCCCeeEE
Q 012535 346 DIKFARNGRHILS-RDYMTLKLWDINMDSGPVATF 379 (461)
Q Consensus 346 ~l~~s~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~ 379 (461)
.+.|+|+|..|+- +.|..+.+=|...+.+.+...
T Consensus 211 ~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 211 GVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred eeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 9999999999996 568999998887533333333
No 196
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.71 E-value=4.9e-14 Score=133.13 Aligned_cols=287 Identities=21% Similarity=0.374 Sum_probs=201.0
Q ss_pred cccccccceEEEEEcCCCCEEEEeec-CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
....|...|.+++|+|+++++++++. |+.+++|+..... ....+.+|.
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~-------- 198 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----------------------PLSTLAGHT-------- 198 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----------------------eEEeeccCC--------
Confidence 35678999999999999999999986 9999999988633 334556677
Q ss_pred cccccceEEEEEeecCCCc-EEEEEeCCCeEEEEEccCCceeE-EeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..|.+++|+ +++. .+++++.|+.|++||...+.... ....+... . . . .|++++..
T Consensus 199 ----~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-------~-~-------~-~~~~~~~~- 255 (466)
T COG2319 199 ----DPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-------V-V-------S-SFSPDGSL- 255 (466)
T ss_pred ----CceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-------e-e-------E-eECCCCCE-
Confidence 779999999 4555 44445999999999887665554 22222110 0 0 1 57777755
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
+++++.++.+++|+ +..... ..... .+|...+.++.|.|++..++++ .|+.+.+|+.....
T Consensus 256 -----------~~~~~~d~~~~~~~-~~~~~~-----~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 256 -----------LASGSSDGTIRLWD-LRSSSS-----LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred -----------EEEecCCCcEEEee-ecCCCc-----EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 37899999999999 433222 22222 5778999999999988888887 67889999887554
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEE-ecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
..... ....|...+..+.|.+++ ..++.+ ..|+.+.+|++..... ....... ..+
T Consensus 318 ~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~-------------~~~ 373 (466)
T COG2319 318 LLSSL------TLKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKP----LKTLEGH-------------SNV 373 (466)
T ss_pred eEEEe------eecccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCce----eEEecCC-------------ceE
Confidence 44322 123466678899994332 345544 6889999999887651 1222221 227
Q ss_pred eEEEEccCCCEEEE-ec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeE
Q 012535 345 SDIKFARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (461)
Q Consensus 345 ~~l~~s~~g~~l~s-~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (461)
..+.+.+ ...++. +. ++.+.+|+... .........+... +..+.+++++..+++++.++.+
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 436 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLST-GSLLRNLDGHTSR---------------VTSLDFSPDGKSLASGSSDNTI 436 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEeccc-CeeeeeccCCCCc---------------EEEEEECCCCcEEEEecCCCcE
Confidence 8889988 544444 34 59999999985 4444444433211 2478899999999999999999
Q ss_pred EEEecCC
Q 012535 423 RVFGCSE 429 (461)
Q Consensus 423 ~iw~~~~ 429 (461)
++|++..
T Consensus 437 ~~~~~~~ 443 (466)
T COG2319 437 RLWDLKT 443 (466)
T ss_pred EEEeccC
Confidence 9999987
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=3.7e-16 Score=132.51 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=137.9
Q ss_pred ccccccCCCcEEeeeeecccCcc--ccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCC-----c-
Q 012535 197 SSFPPGGVSSLRLPVVVTSQETN--LVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-----S- 267 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-----~- 267 (461)
.+++|+.|..|++|.+....... ...+.... +..|...|+++.|+|+|++|++| ++|.|.+|....... .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~-Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSS-LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeec-ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 36999999999999933332222 12223333 37899999999999999999999 899999997661100 0
Q ss_pred ---eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 268 ---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
.+.+.++ ..+.+|...|..++|+|++ .++++++.|..+++||+..+.. ...+..|. ..+
T Consensus 107 ~~~ke~w~v~-k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l----~~~~~dh~------------~yv 168 (434)
T KOG1009|consen 107 DLNKEKWVVK-KVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL----LAILDDHE------------HYV 168 (434)
T ss_pred hhCccceEEE-EEecccccchhhhhccCCC-ceeeeeeccceEEEEEecccee----Eeeccccc------------ccc
Confidence 0000000 2466799999999999999 9999999999999999999986 45555554 789
Q ss_pred eEEEEccCCCEEEE-ecCCeEEEEEccCCCCCeeEEe--------eccCccccccccccCCCcc-ceeeEEEecCCCEEE
Q 012535 345 SDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQ--------VHEHLRPKLCDLYENDSIF-DKFECCLSGDGGRVA 414 (461)
Q Consensus 345 ~~l~~s~~g~~l~s-~~d~~i~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~ 414 (461)
..++|.|-++|+++ +.|...+.+.+.. .+.++... .+... .....+++++.+. --..++|+|||.+|+
T Consensus 169 qgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e-~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNERE-GKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred ceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCC-cceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 99999999999998 5566677776654 22222211 11111 1222344444322 113689999999999
Q ss_pred Eec
Q 012535 415 TGS 417 (461)
Q Consensus 415 s~~ 417 (461)
+.+
T Consensus 247 tPa 249 (434)
T KOG1009|consen 247 TPA 249 (434)
T ss_pred ccc
Confidence 764
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2e-15 Score=140.78 Aligned_cols=208 Identities=11% Similarity=0.082 Sum_probs=133.6
Q ss_pred cceEEEEEeecCCCcEEEEEeCC---CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+...+|+ +||+.|+.++.+ ..|.+||+.+++...+...... .. ..+|+|+|+.+
T Consensus 204 ~~v~~p~wS--PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---------~~-------~~~wSPDG~~L--- 262 (429)
T PRK01742 204 QPLMSPAWS--PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---------NG-------APAFSPDGSRL--- 262 (429)
T ss_pred CccccceEc--CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---------cC-------ceeECCCCCEE---
Confidence 568999999 567788887643 4799999988765444322111 11 56999999975
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 267 (461)
+++...+|.+.+|. +.. ... .. +. +..+...+...+|+|+|+.|+.+ .++...+|+++.....
T Consensus 263 --------a~~~~~~g~~~Iy~-~d~-~~~---~~-~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 263 --------AFASSKDGVLNIYV-MGA-NGG---TP-SQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred --------EEEEecCCcEEEEE-EEC-CCC---Ce-Ee-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 23345678777775 221 111 11 11 23455667889999999987765 4788899987644333
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
... + .+.. ..+.|+|+| +.|++.+.++ +.+||+.++... .+... .....+
T Consensus 328 ~~~-------l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~~-------------~~~~~~ 377 (429)
T PRK01742 328 ASL-------V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSST-------------FLDESP 377 (429)
T ss_pred eEE-------e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecCC-------------CCCCCc
Confidence 222 1 1222 457899999 8888777765 556999887531 11111 112457
Q ss_pred EEccCCCEEEEec-CCeEEEEEcc-CCCCCeeEEeeccCcc
Q 012535 348 KFARNGRHILSRD-YMTLKLWDIN-MDSGPVATFQVHEHLR 386 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~-~~~~~~~~~~~~~~~~ 386 (461)
.|+|||++|+.++ ++.+.+|++. ..+.....+..|.+.+
T Consensus 378 ~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 378 SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence 8999999999865 5767777652 2477788888777654
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=126.87 Aligned_cols=269 Identities=14% Similarity=0.169 Sum_probs=175.3
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEE---eeeecCCCccCCCCCcc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV---FDWNVHPEKAAGNGPIF 168 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~---~~~~~~~~~~~~~~~v~ 168 (461)
+.+.+.+|. +.|+++.|+ .++++|++|+.|..+++|+++..-..++ +....++ ..+.+.
T Consensus 48 ~qKD~~~H~------------GCiNAlqFS--~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~----H~SNIF 109 (609)
T KOG4227|consen 48 CQKDVREHT------------GCINALQFS--HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP----HRSNIF 109 (609)
T ss_pred hhhhhhhhc------------cccceeeec--cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCc----cccceE
Confidence 344566777 779999999 6789999999999999999875322111 1111111 123455
Q ss_pred ccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeee-cccccceeeEEeCCCCCE
Q 012535 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGET 247 (461)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~ 247 (461)
+++|......+ ++|+.+++|.+-| +...+. +..+. ....+.|..+..+|..+.
T Consensus 110 -------~L~F~~~N~~~------------~SG~~~~~VI~HD-iEt~qs------i~V~~~~~~~~~VY~m~~~P~DN~ 163 (609)
T KOG4227|consen 110 -------SLEFDLENRFL------------YSGERWGTVIKHD-IETKQS------IYVANENNNRGDVYHMDQHPTDNT 163 (609)
T ss_pred -------EEEEccCCeeE------------ecCCCcceeEeee-ccccee------eeeecccCcccceeecccCCCCce
Confidence 67777666664 9999999999888 433322 11110 222358999999999999
Q ss_pred EEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
|++. .++.|.+||.+........+ -+.........+.|+|-.+.+|++.+..+-+-+||.+..+.. +....
T Consensus 164 ~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~ 235 (609)
T KOG4227|consen 164 LIVVTRAKLVSFIDNRDRQNPISLV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRS 235 (609)
T ss_pred EEEEecCceEEEEeccCCCCCCcee-----eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhh
Confidence 9988 89999999998655343322 122245567899999999999999999999999999876421 11111
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEee-ccCccccccccccCCCccceeeE
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFEC 404 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 404 (461)
+... +..-...-+++.|+|.|..+++--. ..-.+||+-+ +....++. |.... .+ .... +-++
T Consensus 236 ~~~~------L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S--~R~~V~k~D~N~~G--Y~---N~~T---~KS~ 299 (609)
T KOG4227|consen 236 MFKG------LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS--QRCFVLKSDHNPNG--YC---NIKT---IKSM 299 (609)
T ss_pred cccc------CcccchhhhheeeCCCCCeehhhhccCCCEEeeeec--ccceeEeccCCCCc--ce---eeee---eeee
Confidence 1100 0000023477899999998887543 4556788864 33333332 22111 00 1111 2378
Q ss_pred EEecCCCEEEEecCCCeEEEEecCC
Q 012535 405 CLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
+|..|.. +++|+++=.|++|.+..
T Consensus 300 ~F~~D~~-v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 300 TFIDDYT-VATGSDHWGIHIWKLPR 323 (609)
T ss_pred eeeccee-eeccCcccceEEEecCC
Confidence 8875544 99999999999999974
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.4e-15 Score=129.94 Aligned_cols=201 Identities=15% Similarity=0.215 Sum_probs=135.5
Q ss_pred EEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEE
Q 012535 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (461)
Q Consensus 39 ~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (461)
.+++|+.+|..|++|+.||++|||++.... .......|. ..|.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-----------------------t~l~e~~~~------------~eV~DL 192 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-----------------------TILEEIAHH------------AEVKDL 192 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-----------------------hhhhhHhhc------------Cccccc
Confidence 789999999999999999999999976544 344566676 669999
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCcc
Q 012535 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (461)
Q Consensus 119 ~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (461)
.|+ +||..|++-+.| ..+||+++++........ .++
T Consensus 193 ~FS--~dgk~lasig~d-~~~VW~~~~g~~~a~~t~---------------------------~~k-------------- 228 (398)
T KOG0771|consen 193 DFS--PDGKFLASIGAD-SARVWSVNTGAALARKTP---------------------------FSK-------------- 228 (398)
T ss_pred eeC--CCCcEEEEecCC-ceEEEEeccCchhhhcCC---------------------------ccc--------------
Confidence 999 678899999999 999999998843221110 000
Q ss_pred ccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC---CE-EEEe--CCCeEEEEEccCCCCceeeec
Q 012535 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG---ET-FISA--DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~-l~~~--~d~~i~iwd~~~~~~~~~~~~ 272 (461)
......+.|+.++ .+ +++. ..+.|+.|++...... .+..
T Consensus 229 ----------------------------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~ 273 (398)
T KOG0771|consen 229 ----------------------------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR 273 (398)
T ss_pred ----------------------------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc
Confidence 0111122333332 11 1221 3455666655443321 1110
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
. .........|.+++.+++| +++|.|+.||.|-|++..+-+.. ...-+ .|...|+.+.|+||
T Consensus 274 ~--~~~~~~~~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~---~~vk~------------aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 274 L--RKKIKRFKSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRL---QYVKE------------AHLGFVTGLTFSPD 335 (398)
T ss_pred h--hhhhhccCcceeEEEcCCC-cEEEEeccCCcEEEEEeceeeee---Eeehh------------hheeeeeeEEEcCC
Confidence 0 1122234579999999999 99999999999999999876542 11112 24488999999999
Q ss_pred CCEEEE-ecCCeEEEEEccC
Q 012535 353 GRHILS-RDYMTLKLWDINM 371 (461)
Q Consensus 353 g~~l~s-~~d~~i~vwd~~~ 371 (461)
.+++++ +++....|..+.-
T Consensus 336 sr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 336 SRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCcccccccCCceeEEEEee
Confidence 999998 4467788877653
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.4e-14 Score=121.31 Aligned_cols=269 Identities=12% Similarity=0.146 Sum_probs=168.9
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
.-.+..++|++.-..+|++..|-.|+||+-+.... ..++.-. +..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrn 142 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRN 142 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcc
Confidence 34688999999777899999999999999765321 2222221 145
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
|+|++|-|-. +..|++|+..| |.+|.....-.... +
T Consensus 143 vtclawRPls-aselavgCr~g-IciW~~s~tln~~r---------------~--------------------------- 178 (445)
T KOG2139|consen 143 VTCLAWRPLS-ASELAVGCRAG-ICIWSDSRTLNANR---------------N--------------------------- 178 (445)
T ss_pred eeEEEeccCC-cceeeeeecce-eEEEEcCccccccc---------------c---------------------------
Confidence 9999999744 45777777765 89998653211100 0
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeec
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~ 272 (461)
..+...+...+.. -.+| ..|++++|.+||..++++ .|..|.+||.+++.... +
T Consensus 179 ----~~~~s~~~~qvl~-----------------~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-L-- 233 (445)
T KOG2139|consen 179 ----IRMMSTHHLQVLQ-----------------DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-L-- 233 (445)
T ss_pred ----cccccccchhhee-----------------CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-c--
Confidence 0011111111111 1455 789999999999999998 69999999999665432 1
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
.....+.+.-+.|+||+ .+|.++.-|+..++|+.......++ -.-+ .+.|...+|+|+
T Consensus 234 -----~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~er---w~lg-------------sgrvqtacWspc 291 (445)
T KOG2139|consen 234 -----IPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKER---WILG-------------SGRVQTACWSPC 291 (445)
T ss_pred -----cccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecc---eecc-------------CCceeeeeecCC
Confidence 11245668899999999 8999999999999997654332111 1111 157999999999
Q ss_pred CCEEEEecCCeEEEEEccCCCCCeeEEeeccC--cccccccccc-----CC--CccceeeEEEecCCCEEEEecCC----
Q 012535 353 GRHILSRDYMTLKLWDINMDSGPVATFQVHEH--LRPKLCDLYE-----ND--SIFDKFECCLSGDGGRVATGSYS---- 419 (461)
Q Consensus 353 g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~--~~~~v~~~~~s~~~~~l~s~~~d---- 419 (461)
|++|+-+..+.-++|.+...++..... +..+ .+.-+.++.+ +. .-..+.+++|.|.|.+||+.-..
T Consensus 292 GsfLLf~~sgsp~lysl~f~~~~~~~~-~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v 370 (445)
T KOG2139|consen 292 GSFLLFACSGSPRLYSLTFDGEDSVFL-RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFV 370 (445)
T ss_pred CCEEEEEEcCCceEEEEeecCCCcccc-CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchh
Confidence 999988776777788776433322111 0000 0000000000 00 01123489999999999986433
Q ss_pred ----CeEEEEecCCC
Q 012535 420 ----NLFRVFGCSEG 430 (461)
Q Consensus 420 ----g~i~iw~~~~~ 430 (461)
+.|.+||....
T Consensus 371 ~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 371 LLCKLHISRFDTRKS 385 (445)
T ss_pred hhhhhhhhhhccccc
Confidence 34677777654
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.1e-14 Score=137.94 Aligned_cols=261 Identities=14% Similarity=0.195 Sum_probs=161.5
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
-..+.|+|-. ..++++...-.|++||.+.++...-+.....+ ...|. .+. +.+..+
T Consensus 1067 pk~~~~hpf~--p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-----~t~Vs-------~l~----------liNe~D 1122 (1387)
T KOG1517|consen 1067 PKTLKFHPFE--PQIAAADDRERIRVWDWEKGRLLNGFDNGAFP-----DTRVS-------DLE----------LINEQD 1122 (1387)
T ss_pred CceeeecCCC--ceeEEcCCcceEEEEecccCceeccccCCCCC-----CCccc-------eee----------eecccc
Confidence 4567787643 37888887889999999988765443322111 00111 111 123334
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEee------ecccccceeeEEeCCC-CCEEEEeCCCeEEEEEccCCCCc
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY------AHAHDYHINSISNNSD-GETFISADDLRINLWNLEISNQS 267 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~~~~~-~~~l~~~~d~~i~iwd~~~~~~~ 267 (461)
...+++++.||.|++|+ -..... ...+....+ ..+..+.=.-+.|... |.++++|+-..|+|||.......
T Consensus 1123 ~aLlLtas~dGvIRIwk-~y~~~~-~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWK-DYADKW-KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred hhheeeeccCceEEEec-cccccc-CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence 45679999999999998 222110 111111111 1111111134556665 44555558899999999855444
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
..+ ..+-...|+++.-+-..++++++|..||.|++||.|.... +..+.....|+.. .+|..+
T Consensus 1201 ~di-------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~----------~~Iv~~ 1262 (1387)
T KOG1517|consen 1201 ADI-------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDV----------EPIVHL 1262 (1387)
T ss_pred eec-------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCc----------ccceeE
Confidence 322 1224556777766554458999999999999999987542 1123444444321 239999
Q ss_pred EEccCCCE-EEEec-CCeEEEEEccC-CCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 348 KFARNGRH-ILSRD-YMTLKLWDINM-DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 348 ~~s~~g~~-l~s~~-d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
.+.+.|-- |++|+ +|.|++||++. ..+....+..|..... .++++..+++...+|+|+. +.|+|
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs------------~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS------------ALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc------------cceeeeeccCCCeeeecCc-ceEEE
Confidence 99986644 88876 69999999997 2333333444432111 1248999999999999998 99999
Q ss_pred EecCCCCc
Q 012535 425 FGCSEGSA 432 (461)
Q Consensus 425 w~~~~~~~ 432 (461)
|++...+.
T Consensus 1330 y~~~G~~l 1337 (1387)
T KOG1517|consen 1330 YSLSGEQL 1337 (1387)
T ss_pred EecChhhh
Confidence 99985543
No 203
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=5.5e-13 Score=110.07 Aligned_cols=239 Identities=13% Similarity=0.162 Sum_probs=146.6
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
...+++|+.|..-+++|..+| .+||+.+--+.. ...+.+... -.+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----------------------~~r~~~~~G----------~~~v 52 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----------------------ASRQFIDGG----------FKIV 52 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhh-----------------------hhhccccCc----------hhhh
Confidence 455699999999999998876 899998743221 011111100 1133
Q ss_pred EEEEeecCCCcEEE-EEeCC------CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 117 KIRWCQSANSALYL-LSTND------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 117 ~v~~~p~~~~~~l~-~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
.+-|- . ++++ +|+.+ +.|.|||=..+++...+.... .|. ++.+.++-
T Consensus 53 eMLfR--~--N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~---------~I~-------~V~l~r~r------ 106 (346)
T KOG2111|consen 53 EMLFR--S--NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNS---------EIK-------AVKLRRDR------ 106 (346)
T ss_pred hHhhh--h--ceEEEecCCCCCCCCCceEEEEecccCcEEEEEEecc---------cee-------eEEEcCCe------
Confidence 33332 2 2433 34433 579999955555544444322 222 33333322
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccce-eeEeeecccccceeeEEeCCCCCEEEE-e-CCCeEEEEEccCCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG-CRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQ 266 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~ 266 (461)
++.-..+.|.+|. .. ...... +..+ ......+.+++-..+..+||. | .-|.|.+-|+.....
T Consensus 107 ---------iVvvl~~~I~Vyt-F~---~n~k~l~~~et--~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~ 171 (346)
T KOG2111|consen 107 ---------IVVVLENKIYVYT-FP---DNPKLLHVIET--RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP 171 (346)
T ss_pred ---------EEEEecCeEEEEE-cC---CChhheeeeec--ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence 3344567788877 22 111111 1111 111223333333333444544 3 589999999985544
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCe-EEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
.. |..+..|...|.|++.+.+| .++|+++..|+ |||||..++..+ ..+....+. ..|.
T Consensus 172 ~~------p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l----~E~RRG~d~----------A~iy 230 (346)
T KOG2111|consen 172 NA------PSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL----QELRRGVDR----------ADIY 230 (346)
T ss_pred CC------ceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe----eeeecCCch----------heEE
Confidence 10 11467799999999999999 99999999997 799999999873 444332222 5799
Q ss_pred EEEEccCCCEEEEecC-CeEEEEEccC
Q 012535 346 DIKFARNGRHILSRDY-MTLKLWDINM 371 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~d-~~i~vwd~~~ 371 (461)
+++|||++.+|++++| |++.|+.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999998 9999999974
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=6.1e-16 Score=142.61 Aligned_cols=251 Identities=11% Similarity=0.147 Sum_probs=177.0
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.+|.|+.|. ..|.++++|+.|..++||.++++.+......+. +.+. .++.+.+.-.
T Consensus 191 naVyca~fD--rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--------~dit-------dlavs~~n~~------- 246 (1113)
T KOG0644|consen 191 NAVYCAIFD--RTGRYIITGSDDRLVKIWSMETARCLASCRGHS--------GDIT-------DLAVSSNNTM------- 246 (1113)
T ss_pred hheeeeeec--cccceEeecCccceeeeeeccchhhhccCCCCc--------cccc-------hhccchhhhh-------
Confidence 889999998 668999999999999999999988777666553 2233 3333333333
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeec
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+++++.|..|++|. +...... .. +.+|++.|++|+|+|-. .++.||++++||.+ .. ..++.
T Consensus 247 -----iaaaS~D~vIrvWr-l~~~~pv------sv-LrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~--~~~y~ 307 (1113)
T KOG0644|consen 247 -----IAAASNDKVIRVWR-LPDGAPV------SV-LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LE--PRIYV 307 (1113)
T ss_pred -----hhhcccCceEEEEe-cCCCchH------HH-HhccccceeeeccCccc---cCCCCCceEecccc-cc--ccccC
Confidence 48999999999998 5433322 22 48999999999999976 33489999999998 21 11222
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
.+|..+.+ ...+.++.|...+ .-+++++.|+.-..|.+..... +. ..+.-+.++.+
T Consensus 308 prp~~~~~-~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~----------~~------------~~lif~t~ssd 363 (1113)
T KOG0644|consen 308 PRPLKFTE-KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAW----------RS------------NLLIFVTRSSD 363 (1113)
T ss_pred CCCCCccc-ccceeeeeccccc-cccccccCCcccccchhhHhhh----------hc------------cceEEEecccc
Confidence 23333332 3567788888888 8899999999988887654221 10 11222222222
Q ss_pred C-CEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-EEEEecCCCeEEEEecCC
Q 012535 353 G-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 353 g-~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 429 (461)
- .+.+++ .+-.+++|++.. +.+.+.+.+|...+ +.+.++|-+. ...+++.||...|||+-.
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred ccccceeeeeeeEeeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 2 344443 568899999996 88899999998776 3788999654 556899999999999999
Q ss_pred CCccceeeccCCCCCcc
Q 012535 430 GSAESTTLEASKNPMSL 446 (461)
Q Consensus 430 ~~~~~~~~~~~~~~~~~ 446 (461)
|..+.....+|.+.+..
T Consensus 428 g~pik~y~~gh~kl~d~ 444 (1113)
T KOG0644|consen 428 GIPIKHYFIGHGKLVDG 444 (1113)
T ss_pred CCcceeeecccceeecc
Confidence 98777666665544443
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=6.7e-14 Score=117.67 Aligned_cols=161 Identities=12% Similarity=0.178 Sum_probs=122.0
Q ss_pred ccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe--cCCeEEEE
Q 012535 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLI 310 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~iw 310 (461)
...|.++.++. +.|+++-...|.|||+++.+....+. +.+.+...+.++.+++.+ .++|.-+ ..|.|.||
T Consensus 87 pt~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhTI~-----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHTIE-----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLF 158 (391)
T ss_pred CCceEEEEEcc--ceEEEEEcccEEEEecccceeehhhh-----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEE
Confidence 35677777754 45677732349999999777654432 233456667777777776 5777543 36899999
Q ss_pred ECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-C-eEEEEEccCCCCCeeEEeeccCcccc
Q 012535 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPK 388 (461)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~-~i~vwd~~~~~~~~~~~~~~~~~~~~ 388 (461)
|..+-+. +..+..|+ +++.+++|+++|.+||++++ | .|||+.+.. ++.+..|+.....+.
T Consensus 159 d~~nl~~----v~~I~aH~------------~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~- 220 (391)
T KOG2110|consen 159 DTINLQP----VNTINAHK------------GPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS- 220 (391)
T ss_pred Eccccee----eeEEEecC------------CceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE-
Confidence 9988664 45555555 89999999999999999997 4 579999985 888888876554432
Q ss_pred ccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
|.+++|+||+++|++.|+.++|+||.++...
T Consensus 221 ------------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 ------------IYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ------------EEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 4699999999999999999999999998653
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=8.1e-14 Score=116.83 Aligned_cols=262 Identities=14% Similarity=0.169 Sum_probs=161.6
Q ss_pred ccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 35 VDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 35 ~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
...|+|++|-| .+.-|++|+..| |.||..+.....+..+..+..... .+....+| .
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~---------qvl~~pgh-------------~ 196 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHL---------QVLQDPGH-------------N 196 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccch---------hheeCCCC-------------c
Confidence 46799999999 556888888775 899987654332222221111110 11123445 4
Q ss_pred ceEEEEEeecCCCcEEEEEe-CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 114 KINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.|++++|. +||..+++++ .|..|.|||.+++....+.... .|.+. -+.|+|||..+
T Consensus 197 pVtsmqwn--~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--------lgg~s-------lLkwSPdgd~l------ 253 (445)
T KOG2139|consen 197 PVTSMQWN--EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--------LGGFS-------LLKWSPDGDVL------ 253 (445)
T ss_pred eeeEEEEc--CCCCEEeecccCcceEEEEcCCCCCcccccccC--------CCcee-------eEEEcCCCCEE------
Confidence 59999999 6788999987 7789999999999877665322 22333 57999999985
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCce----
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF---- 268 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~---- 268 (461)
+.+..|+..++|+ ....-+ +.+- .--.+.|...+|+|.|++|+.+..+.-++|.+.-.++..
T Consensus 254 ------faAt~davfrlw~-e~q~wt-----~erw--~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~ 319 (445)
T KOG2139|consen 254 ------FAATCDAVFRLWQ-ENQSWT-----KERW--ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLR 319 (445)
T ss_pred ------EEecccceeeeeh-hcccce-----ecce--eccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccC
Confidence 9999999999996 222211 1111 112248999999999999887744555566554222211
Q ss_pred --------eeeccCCCCCCC----CCcceEEEEEeCCCCCeEEEEecCC--------eEEEEECCCcccccccccccccc
Q 012535 269 --------NIVDVKPANMED----LTEVITSAEFHPTHCNMLAYSSSKG--------SIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 269 --------~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
-+.++...+... -.+.+.+++|.|.| .+||+....+ .|.+||.+.....+-...-+...
T Consensus 320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g 398 (445)
T KOG2139|consen 320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG 398 (445)
T ss_pred cccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC
Confidence 111111111111 25678899999999 8888876544 36677776654321000011111
Q ss_pred cCCCccccccccccceeEEEEcc---CCCEEEEec-CCeEEEEEcc
Q 012535 329 EAPGTRSFFTEIIASISDIKFAR---NGRHILSRD-YMTLKLWDIN 370 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~---~g~~l~s~~-d~~i~vwd~~ 370 (461)
+ ....++|+| +|.+|..+- .|.+.-|++.
T Consensus 399 e-------------~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 399 E-------------YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred C-------------CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1 134456665 667777664 4888888875
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=1.8e-14 Score=118.79 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=153.7
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
++|+|.+|+ .|...++++.....|.||.......-.
T Consensus 11 ~pitchAwn--~drt~iAv~~~~~evhiy~~~~~~~w~------------------------------------------ 46 (361)
T KOG1523|consen 11 EPITCHAWN--SDRTQIAVSPNNHEVHIYSMLGADLWE------------------------------------------ 46 (361)
T ss_pred Cceeeeeec--CCCceEEeccCCceEEEEEecCCCCce------------------------------------------
Confidence 679999998 677889999888889998876554111
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
...+ +..|...|+.|+|+|..+.|+++ .|..-++|....+..-....
T Consensus 47 -------------------------------~~ht-ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 47 -------------------------------PAHT-LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred -------------------------------ecee-hhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce
Confidence 0011 26788999999999999999999 79999999984333221111
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+..++..+++|.|+|.+ +.||+|+..+.|.||-++....-+-..+.-. .+.+.|+++.|+|
T Consensus 95 -----vLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikk------------PirStv~sldWhp 156 (361)
T KOG1523|consen 95 -----VLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKK------------PIRSTVTSLDWHP 156 (361)
T ss_pred -----eEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCC------------ccccceeeeeccC
Confidence 244578899999999998 9999999999999998876543211111111 1236799999999
Q ss_pred CCCEEEEec-CCeEEEEEccC---CCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 352 NGRHILSRD-YMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
++-+|++|+ |+..||+..-- +.++...--+..-+-..+...+. ..-..+..+.|+|+|..|+-.+.|..+.+=|.
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 999999987 79999987532 01111110011100001111110 01112358999999999999999999999998
Q ss_pred CCCCc
Q 012535 428 SEGSA 432 (461)
Q Consensus 428 ~~~~~ 432 (461)
....+
T Consensus 236 ~~p~~ 240 (361)
T KOG1523|consen 236 AGPSE 240 (361)
T ss_pred CCCch
Confidence 87653
No 208
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=1.9e-14 Score=117.81 Aligned_cols=149 Identities=19% Similarity=0.327 Sum_probs=104.5
Q ss_pred eEEeCCCCCEEEEe-C----------CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEE--EecC
Q 012535 238 SISNNSDGETFISA-D----------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSK 304 (461)
Q Consensus 238 ~i~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~--~~~d 304 (461)
.+.|+++|+.|+.- . -+...+|.++..+.....+ .+. ..+.|.+++|+|++ ..||+ |..+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~~ 82 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSMP 82 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccCC
Confidence 57789999887753 2 2446666665444333322 122 34569999999999 66544 4467
Q ss_pred CeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec----CCeEEEEEccCCCCCeeEEe
Q 012535 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~----d~~i~vwd~~~~~~~~~~~~ 380 (461)
+.|.+||++... +..+.. ..++.+.|+|+|++|+.|+ .|.|.+||++. .+.+..++
T Consensus 83 ~~v~lyd~~~~~-----i~~~~~--------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~ 142 (194)
T PF08662_consen 83 AKVTLYDVKGKK-----IFSFGT--------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE 142 (194)
T ss_pred cccEEEcCcccE-----eEeecC--------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc
Confidence 899999997332 344432 4578899999999999864 27899999985 66665554
Q ss_pred eccCccccccccccCCCccceeeEEEecCCCEEEEecC------CCeEEEEecCCC
Q 012535 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCSEG 430 (461)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~ 430 (461)
|... ..++|+|||++|++++. |+.++||+....
T Consensus 143 -~~~~----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 143 -HSDA----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred -cCcE----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 2222 38999999999998864 799999999743
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.4e-13 Score=122.25 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=187.9
Q ss_pred cccccccccceEEEEEcCCCCE-EEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhc
Q 012535 28 AGEEVQEVDIISAIEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (461)
Q Consensus 28 ~~~~~~h~~~V~~~~~s~~g~~-l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (461)
.+.++++...-+.|..+|||+| ||||..--.|++||+..... .|.-|...
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------------------------KFERhlDa---- 94 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------------------------KFERHLDA---- 94 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-------------------------eeeecccc----
Confidence 3457789999999999999996 56788889999999875431 23333310
Q ss_pred cccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
+.|.-.-.+ .|-...+.-..|++|.+...- |....+..... |. .++++.
T Consensus 95 ------e~V~feiLs--DD~SK~v~L~~DR~IefHak~-G~hy~~RIP~~--------GR---------Dm~y~~----- 143 (703)
T KOG2321|consen 95 ------EVVDFEILS--DDYSKSVFLQNDRTIEFHAKY-GRHYRTRIPKF--------GR---------DMKYHK----- 143 (703)
T ss_pred ------cceeEEEec--cchhhheEeecCceeeehhhc-CeeeeeecCcC--------Cc---------cccccC-----
Confidence 224433443 444456666778888765532 22111111100 00 122221
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
.+.|. +.++....|.-++ +.. +..+..+ ....+.++++..++-..+|++| .+|.|..||.+...
T Consensus 144 ------~scDl-y~~gsg~evYRlN-LEq------GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 144 ------PSCDL-YLVGSGSEVYRLN-LEQ------GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred ------CCccE-EEeecCcceEEEE-ccc------ccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 12222 3444444444444 211 1111111 3445789999999999999999 79999999999655
Q ss_pred CceeeeccCCCCCCCCC-----cceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 266 QSFNIVDVKPANMEDLT-----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~-----~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
.+-.+ +.. .....|. ..|+++.|+.+| -.+++|..+|.+.|||++..+.. ....|..
T Consensus 209 rv~~l-~~~-~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl-----~~kdh~~---------- 270 (703)
T KOG2321|consen 209 RVGTL-DAA-SSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPL-----LVKDHGY---------- 270 (703)
T ss_pred hheee-ecc-cccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCce-----eecccCC----------
Confidence 44322 211 1222333 349999999998 89999999999999999998752 1222221
Q ss_pred ccceeEEEEccC--CCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 341 IASISDIKFARN--GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 341 ~~~v~~l~~s~~--g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
.-+|..+.|.+. +..|++.+...++|||-.+ +++...+...... ..+|+-|++.+++++-+
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANE 333 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecC
Confidence 156889999774 4567777779999999986 8888777654442 28899999999999998
Q ss_pred CCeEEEEecCC
Q 012535 419 SNLFRVFGCSE 429 (461)
Q Consensus 419 dg~i~iw~~~~ 429 (461)
++.+..|=+..
T Consensus 334 ~~~m~~yyiP~ 344 (703)
T KOG2321|consen 334 SSKMHTYYIPS 344 (703)
T ss_pred CCcceeEEccc
Confidence 88887776654
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3e-14 Score=132.92 Aligned_cols=225 Identities=13% Similarity=0.100 Sum_probs=137.3
Q ss_pred CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccC---CCcEEeee
Q 012535 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG---VSSLRLPV 211 (461)
Q Consensus 135 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~i~i~~ 211 (461)
+..|.+||.+......+... ...+. ...|+|+|+.+ +..+. +..|.+||
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~---------~~~v~-------~p~wSPDG~~l------------a~~s~~~~~~~i~i~d 234 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRS---------SQPLM-------SPAWSPDGSKL------------AYVSFENKKSQLVVHD 234 (429)
T ss_pred eEEEEEECCCCCCceEeccC---------CCccc-------cceEcCCCCEE------------EEEEecCCCcEEEEEe
Confidence 57899999876653332221 11233 67999999986 44332 34688898
Q ss_pred eecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEE--EccCCCCceeeeccCCCCCCCCCcceEE
Q 012535 212 VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDVKPANMEDLTEVITS 287 (461)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 287 (461)
+..... .....+ .+ ....++|+|+|+.|+.+ .+|.+.+| |+.++ ... .+..+...+..
T Consensus 235 -l~tg~~----~~l~~~-~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-~~~--------~lt~~~~~~~~ 296 (429)
T PRK01742 235 -LRSGAR----KVVASF-RG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-TPS--------QLTSGAGNNTE 296 (429)
T ss_pred -CCCCce----EEEecC-CC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCC-CeE--------eeccCCCCcCC
Confidence 432111 111111 23 33468999999988876 47776666 54432 222 23445666789
Q ss_pred EEEeCCCCCeEEEE-ecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEE
Q 012535 288 AEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL 366 (461)
Q Consensus 288 v~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~v 366 (461)
+.|+|+| +.|+.+ ..+|...||++...... ...+ .+ .. ....|+|||++|+..+...+.+
T Consensus 297 ~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~------------~~--~~~~~SpDG~~ia~~~~~~i~~ 357 (429)
T PRK01742 297 PSWSPDG-QSILFTSDRSGSPQVYRMSASGGG---ASLV-GG------------RG--YSAQISADGKTLVMINGDNVVK 357 (429)
T ss_pred EEECCCC-CEEEEEECCCCCceEEEEECCCCC---eEEe-cC------------CC--CCccCCCCCCEEEEEcCCCEEE
Confidence 9999999 655544 46788888887543211 1111 11 12 3468999999998866556777
Q ss_pred EEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC--CCCccceeeccCCCC
Q 012535 367 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS--EGSAESTTLEASKNP 443 (461)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~ 443 (461)
||+.+ ++.. .+..+.. . ..++|+|||++|+.++.+|.+.+|.+. +|+.. ..+..+...
T Consensus 358 ~Dl~~-g~~~-~lt~~~~-~---------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~-~~l~~~~g~ 417 (429)
T PRK01742 358 QDLTS-GSTE-VLSSTFL-D---------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK-ARLPGSDGQ 417 (429)
T ss_pred EECCC-CCeE-EecCCCC-C---------------CCceECCCCCEEEEEEcCCCceEEEEEECCCCce-EEccCCCCC
Confidence 99975 4432 2221111 1 267899999999999999988888763 34333 455554443
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.3e-14 Score=110.78 Aligned_cols=217 Identities=13% Similarity=0.175 Sum_probs=146.2
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCcccc---ceeeEeeecccccceeeEEeCCCCCEEEEeC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLV---AGCRRIYAHAHDYHINSISNNSDGETFISAD 252 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 252 (461)
.-+++|.++++ ++|..+|.|.+.. +........ .+..-...++|.+++..++|. ..+|++|.
T Consensus 15 ~qa~sp~~~~l------------~agn~~G~iav~s-l~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 15 AQAISPSKQYL------------FAGNLFGDIAVLS-LKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHhhCCcceEE------------EEecCCCeEEEEE-ehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 45788888875 9999999999988 544332211 111112228999999999998 55788888
Q ss_pred CCeEEEEEccCCCC---ceeeeccCCCCCC--CCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 253 DLRINLWNLEISNQ---SFNIVDVKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 253 d~~i~iwd~~~~~~---~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
||.|+-|..+...+ +...+..++.... -.--.|+++-..|.. +-++.++.|+.++-||+++++. .+++.+
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i----~r~~rG 154 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI----QREYRG 154 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE----EEEEcC
Confidence 89999997764332 2222222221111 112357899999987 6677777999999999999986 466666
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
|. ..|.++.--.....+++| .||++|+||.++ ++.+.++........ ...+.- -|-.+.
T Consensus 155 Ht------------DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~-----lRp~~g--~wigal 214 (325)
T KOG0649|consen 155 HT------------DYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNL-----LRPDWG--KWIGAL 214 (325)
T ss_pred Cc------------ceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhh-----cCcccC--ceeEEE
Confidence 55 779999884444455565 479999999997 888888865443211 000111 123555
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..+..+|++|+. ..+.+|++++.+..
T Consensus 215 a~~edWlvCGgG-p~lslwhLrsse~t 240 (325)
T KOG0649|consen 215 AVNEDWLVCGGG-PKLSLWHLRSSEST 240 (325)
T ss_pred eccCceEEecCC-CceeEEeccCCCce
Confidence 567789998875 57899999987644
No 212
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.3e-14 Score=128.41 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=142.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
.-.|.++|.|++..+++.++++|+.||+|+.|++.....- -. .+........+.||+
T Consensus 340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp---~d----------s~dp~vl~~~l~Ght---------- 396 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP---DD----------SYDPSVLSGTLLGHT---------- 396 (577)
T ss_pred EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc---cc----------ccCcchhccceeccc----------
Confidence 3469999999999999999999999999999987622110 00 000112445688998
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
+.|+.+++++. ...|++++.||++++|+...... .++..... .+... ++.+-....
T Consensus 397 --davw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e------~g~Pl-------svd~~ss~~------ 452 (577)
T KOG0642|consen 397 --DAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKE------HGYPL-------SVDRTSSRP------ 452 (577)
T ss_pred --cceeeeeeccc--ccceeeecCCceEEeeccCCcCc-cccCCccc------cCCcc-------eEeeccchh------
Confidence 88999999955 44899999999999999876654 22211111 00011 222211110
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEee---ecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY---AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
+....+.....++ +...+........... .......+.-+.++|.+.+.+++ .|+.|+++|..++..
T Consensus 453 --------a~~~~s~~~~~~~-~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 453 --------AHSLASFRFGYTS-IDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred --------Hhhhhhccccccc-chhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 1111122222222 1111111111000000 01112346678889999898998 899999999987766
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
.. ....|...++++++.|+| -+|++++.|+.+++|.+....
T Consensus 524 l~--------s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 524 LH--------SMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ch--------heeeccceecceeecCCC-ceEEeecCCceeehhhccchh
Confidence 54 456689999999999999 899999999999999987654
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1e-13 Score=117.42 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=114.7
Q ss_pred EEEEe-CC--CeEEEEEccCCCCceeeeccCCCCCC-CCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCcccccc
Q 012535 247 TFISA-DD--LRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDT 320 (461)
Q Consensus 247 ~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~ 320 (461)
++++| .. ..+.+||+++.++.+.--.++...+. .-+-+++++.|-+. . ..||+++.-+.+++||.+.++.
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRR--- 238 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRR--- 238 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCc---
Confidence 34445 45 78889998866444332112111111 12345678889886 5 8999999999999999986652
Q ss_pred cccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeE-EeeccCccccccccccCCCc
Q 012535 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSI 398 (461)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 398 (461)
++..|.-.. .+++++...|+|+++++|+. +.+..||++. ++.+.. +.+-.+.+
T Consensus 239 PV~~fd~~E------------~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi------------ 293 (412)
T KOG3881|consen 239 PVAQFDFLE------------NPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI------------ 293 (412)
T ss_pred ceeEecccc------------CcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCCccCCc------------
Confidence 245555444 67999999999999999986 9999999996 665554 66666655
Q ss_pred cceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.++..+|..++|+++|-|..|||+|+++.+.+
T Consensus 294 ---rsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 294 ---RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ---ceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 38999999999999999999999999986544
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=9e-15 Score=126.33 Aligned_cols=317 Identities=11% Similarity=0.141 Sum_probs=209.5
Q ss_pred CCcccccCCceeeeccc-cccCCccc------ccc-cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCccccc
Q 012535 6 GSSEAAAQPLEWKFSQV-FGERTAGE------EVQ-EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDL 77 (461)
Q Consensus 6 ~~~~~~~~~~~w~~~~~-~~~~~~~~------~~~-h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~ 77 (461)
|..+|...+..|++.|- ..+..... ++. ..-.-..+.++.+|++|+.|+.-|.|-.+|+.+++.
T Consensus 92 G~le~e~~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-------- 163 (545)
T KOG1272|consen 92 GYLEAEGLEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-------- 163 (545)
T ss_pred CcccccCCcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeeccccee--------
Confidence 44556667788998873 11111110 010 122346788889999999999999999999988763
Q ss_pred ccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecC
Q 012535 78 EMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVH 157 (461)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 157 (461)
..++... +.|..+.|. .+.+ +++....+.+.|||-..-++.++....
T Consensus 164 ---------------~~Ei~v~-------------Etv~Dv~~L--Hneq-~~AVAQK~y~yvYD~~GtElHClk~~~-- 210 (545)
T KOG1272|consen 164 ---------------HFEINVM-------------ETVRDVTFL--HNEQ-FFAVAQKKYVYVYDNNGTELHCLKRHI-- 210 (545)
T ss_pred ---------------eeeeehh-------------hhhhhhhhh--cchH-HHHhhhhceEEEecCCCcEEeehhhcC--
Confidence 2333322 558999998 4443 455556678999997766554443321
Q ss_pred CCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccccccee
Q 012535 158 PEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN 237 (461)
Q Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 237 (461)
.+. .+.|.|.--.+ ++++..|.++.-| +........ +....+.+.
T Consensus 211 --------~v~-------rLeFLPyHfLL------------~~~~~~G~L~Y~D-VS~GklVa~-------~~t~~G~~~ 255 (545)
T KOG1272|consen 211 --------RVA-------RLEFLPYHFLL------------VAASEAGFLKYQD-VSTGKLVAS-------IRTGAGRTD 255 (545)
T ss_pred --------chh-------hhcccchhhee------------eecccCCceEEEe-echhhhhHH-------HHccCCccc
Confidence 122 56777776664 8899999999888 443332111 133446777
Q ss_pred eEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
.++-+|-+-.+-.| ..|+|.+|.....+...+ +..|.++|.+|++.++| +++++.+.|..++|||++.-.
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcceEEECCCC-cEEeecccccceeEeeecccc
Confidence 88889998889999 899999999987666653 56699999999999999 999999999999999999865
Q ss_pred cccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCC--CeeEEeeccCcccccccccc
Q 012535 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYE 394 (461)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 394 (461)
. +.++..+ -+...++||..| +||.+-...|.||.=...+. .-..+-.|.-.
T Consensus 327 q----l~t~~tp-------------~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~--------- 379 (545)
T KOG1272|consen 327 Q----LHTYRTP-------------HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCG--------- 379 (545)
T ss_pred c----cceeecC-------------CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccC---------
Confidence 3 3333332 356788898665 44444445899996432111 11111112111
Q ss_pred CCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeec
Q 012535 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (461)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 438 (461)
..|.++.|.|-...|-.|-.-|.-.+-=.-.|+...-.++
T Consensus 380 ----~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e 419 (545)
T KOG1272|consen 380 ----GPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLE 419 (545)
T ss_pred ----cccccceeccHHHeeeccccCCceeEeccCCCCCCcchhc
Confidence 1245888999888888887777666655555554444443
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.8e-14 Score=123.13 Aligned_cols=200 Identities=18% Similarity=0.139 Sum_probs=138.4
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
.++|..+|..+ ++++.||.+|+|+ ......... ...|...|.++.|+|||++|++- .|
T Consensus 149 ~vaf~~~gs~l------------atgg~dg~lRv~~-~Ps~~t~l~-------e~~~~~eV~DL~FS~dgk~lasig~d- 207 (398)
T KOG0771|consen 149 VVAFNGDGSKL------------ATGGTDGTLRVWE-WPSMLTILE-------EIAHHAEVKDLDFSPDGKFLASIGAD- 207 (398)
T ss_pred EEEEcCCCCEe------------eeccccceEEEEe-cCcchhhhh-------hHhhcCccccceeCCCCcEEEEecCC-
Confidence 67888888775 9999999999999 322222111 26788999999999999999997 67
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCC--CC-eEE-EEecCCeEEEEECCCcccccccc--cccccc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN-MLA-YSSSKGSIRLIDMRQSALCDTHS--KLFEEQ 328 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~ 328 (461)
..+||+.+++...... +-...+.....+.|+.++ +. +++ ....-+.|+.||+....-- ..+ +.....
T Consensus 208 ~~~VW~~~~g~~~a~~------t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~ 280 (398)
T KOG0771|consen 208 SARVWSVNTGAALARK------TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKR 280 (398)
T ss_pred ceEEEEeccCchhhhc------CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhc
Confidence 9999999977333211 112234455677777654 11 233 3333456777776543210 001 111111
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
...|++++.++||++++.|+ +|.|-|++...-......-+.|...+ +.+.|+
T Consensus 281 ------------~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~V---------------T~ltF~ 333 (398)
T KOG0771|consen 281 ------------FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFV---------------TGLTFS 333 (398)
T ss_pred ------------cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeee---------------eeEEEc
Confidence 14799999999999999987 69999999986333334445677655 599999
Q ss_pred cCCCEEEEecCCCeEEEEecCCC
Q 012535 408 GDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
||.+++++.+.|..+.|..+.-.
T Consensus 334 Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 334 PDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcCcccccccCCceeEEEEeec
Confidence 99999999999999999988754
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=4.9e-13 Score=120.69 Aligned_cols=296 Identities=11% Similarity=0.086 Sum_probs=166.7
Q ss_pred CEE-EEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCC
Q 012535 48 DHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (461)
Q Consensus 48 ~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~ 126 (461)
+++ ++-..+|.|.+.|..+.+ .+..+.... ..-..+.|+ +|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~-----------------------~~~~i~~~~------------~~h~~~~~s--~Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNK-----------------------VVARIPTGG------------APHAGLKFS--PDG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-S-----------------------EEEEEE-ST------------TEEEEEE-T--T-S
T ss_pred cEEEEEecCCCEEEEEECCCCe-----------------------EEEEEcCCC------------CceeEEEec--CCC
Confidence 344 445568999999988765 233443322 222345677 778
Q ss_pred cEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCc
Q 012535 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (461)
Q Consensus 127 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 206 (461)
+++++++.||.|.++|+.+++..........+ .+++++++|+++ ++++...+.
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~----------------~~i~~s~DG~~~-----------~v~n~~~~~ 101 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNP----------------RGIAVSPDGKYV-----------YVANYEPGT 101 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSEE----------------EEEEE--TTTEE-----------EEEEEETTE
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCCc----------------ceEEEcCCCCEE-----------EEEecCCCc
Confidence 89999999999999999999877766543221 178999999986 455668899
Q ss_pred EEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcc
Q 012535 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (461)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (461)
+.++| ....+..................+..+..+|....++.. +.+.|.+-|....+.... ........
T Consensus 102 v~v~D-~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-------~~i~~g~~ 173 (369)
T PF02239_consen 102 VSVID-AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-------TTIKVGRF 173 (369)
T ss_dssp EEEEE-TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-------EEEE--TT
T ss_pred eeEec-cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-------eeeccccc
Confidence 99999 332222111100000001134567788888888866655 568898888875543321 11123455
Q ss_pred eEEEEEeCCCCCeEEE-EecCCeEEEEECCCccccccccccc-ccccCC-----C-----------------------cc
Q 012535 285 ITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLF-EEQEAP-----G-----------------------TR 334 (461)
Q Consensus 285 v~~v~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~-----~-----------------------~~ 334 (461)
.....|+|++ ++++. ...+..|-++|..+++.... +.+- ..+..+ . +.
T Consensus 174 ~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~-i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v 251 (369)
T PF02239_consen 174 PHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVAL-IDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPV 251 (369)
T ss_dssp EEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEE-EE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TT
T ss_pred ccccccCccc-ceeeecccccceeEEEeeccceEEEE-eeccccccccccccccCCCcceEEeeccccceecccccCCcc
Confidence 6789999998 66544 56677899999887754210 0000 000000 0 00
Q ss_pred c-----------cccccccceeEEEEccCCCEEEEe----cC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCc
Q 012535 335 S-----------FFTEIIASISDIKFARNGRHILSR----DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (461)
Q Consensus 335 ~-----------~~~~h~~~v~~l~~s~~g~~l~s~----~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (461)
. .+.. .+.-..+..+|++++|.+. .+ +.|.++|.++ .+.+..+....+..
T Consensus 252 ~v~d~~~wkvv~~I~~-~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~------------ 317 (369)
T PF02239_consen 252 SVHDDYAWKVVKTIPT-QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKR------------ 317 (369)
T ss_dssp T-STTTBTSEEEEEE--SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT--------------
T ss_pred ccchhhcCeEEEEEEC-CCCcceeecCCCCccEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCc------------
Confidence 0 0001 1222567789999999987 35 8999999986 45555554333210
Q ss_pred cceeeEEEecCCCEEEEec--CCCeEEEEecCCCCcc
Q 012535 399 FDKFECCLSGDGGRVATGS--YSNLFRVFGCSEGSAE 433 (461)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~ 433 (461)
+..+.|++||+.+..+. .++.|.+||..+.++.
T Consensus 318 --~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 318 --VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred --EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 24899999999765544 3447999999988765
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=7.3e-14 Score=122.98 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=125.0
Q ss_pred CCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccC
Q 012535 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (461)
Q Consensus 124 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (461)
+++--++.|-.-|.|++.|....+..+++... ..+....+. ++.|.|.+..+ ++++-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~----r~i~ktsvT-------~ikWvpg~~~~-----------Fl~a~~ 240 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEE----RLINKSSVT-------CIKWVPGSDSL-----------FLVAHA 240 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhc----ccccccceE-------EEEEEeCCCce-----------EEEEEe
Confidence 44667888888888998887664332222211 111123344 77888877664 567778
Q ss_pred CCcEEeeeeecccCccccceeeEeeecccccceee--EEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCC
Q 012535 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS--ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (461)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (461)
+|.+.+|| . .+...... ....+++..|... .|--.....++. .+.--
T Consensus 241 sGnlyly~-~-----------------~~~~~~t~p~~~~~k~~~~f~i~------t~ksk~~rNPv~-------~w~~~ 289 (636)
T KOG2394|consen 241 SGNLYLYD-K-----------------EIVCGATAPSYQALKDGDQFAIL------TSKSKKTRNPVA-------RWHIG 289 (636)
T ss_pred cCceEEee-c-----------------cccccCCCCcccccCCCCeeEEe------eeeccccCCccc-------eeEec
Confidence 88888887 2 01111111 1122344444432 111111111111 11113
Q ss_pred CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-
Q 012535 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (461)
Q Consensus 282 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~- 360 (461)
.+.|+..+|+||| ++||+.+.||.+||+|..+.++ +..++..- +...|++|||||+||++|+
T Consensus 290 ~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eL----lg~mkSYF------------GGLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 290 EGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQEL----LGVMKSYF------------GGLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred cccccceeEcCCC-ceEEEEecCceEEEeeccHHHH----HHHHHhhc------------cceEEEEEcCCccEEEecCC
Confidence 4589999999999 9999999999999999988765 23333322 6799999999999999976
Q ss_pred CCeEEEEEccCCCCCeeEEeeccCccc
Q 012535 361 YMTLKLWDINMDSGPVATFQVHEHLRP 387 (461)
Q Consensus 361 d~~i~vwd~~~~~~~~~~~~~~~~~~~ 387 (461)
|.-|.||.+.. .+.+..=++|..+|.
T Consensus 353 DDLVtVwSf~e-rRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 353 DDLVTVWSFEE-RRVVARGQGHKSWVS 378 (636)
T ss_pred cceEEEEEecc-ceEEEecccccccee
Confidence 69999999984 889999999999885
No 218
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.1e-14 Score=118.35 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=135.4
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC--CCCEEEEe-CCCeEEEEEccCCCCceeeeccC
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (461)
++++...|.|++|| ..+ ......+ .++...++.+.|.. ....+.++ .||+|++||++...+..++
T Consensus 43 vav~lSngsv~lyd-~~t------g~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~---- 110 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYD-KGT------GQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI---- 110 (376)
T ss_pred EEEEecCCeEEEEe-ccc------hhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe----
Confidence 58899999999999 222 2223333 77888888888876 46667777 8999999999977665443
Q ss_pred CCCCCCCC-cceEEEEEeCCCCCeEEEEec----CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 275 PANMEDLT-EVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 275 ~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
....++ .+..+++..-.+ +++++|.. +-.+.+||+|..+.. ++.+. ..|...|++++|
T Consensus 111 --~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~---l~~~~-----------eSH~DDVT~lrF 173 (376)
T KOG1188|consen 111 --SWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQL---LRQLN-----------ESHNDDVTQLRF 173 (376)
T ss_pred --eccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccch---hhhhh-----------hhccCcceeEEe
Confidence 244444 566778877666 78888765 668999999987642 22221 224478999999
Q ss_pred cc-CCCEEEEec-CCeEEEEEccCCCC---CeeEEeeccCccccccccccCCCccceeeEEEecCC-CEEEEecCCCeEE
Q 012535 350 AR-NGRHILSRD-YMTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFR 423 (461)
Q Consensus 350 s~-~g~~l~s~~-d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~ 423 (461)
+| +-.+|++|+ ||-|.|||+..+.+ ++.++. |...+ -.+.|..++ +.|.+-+......
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI---------------~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSI---------------HLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-cccee---------------eeeeeecCCcceEEEEEccCcee
Confidence 99 557888887 79999999985322 122222 22222 388898876 4588888899999
Q ss_pred EEecCCCCcc
Q 012535 424 VFGCSEGSAE 433 (461)
Q Consensus 424 iw~~~~~~~~ 433 (461)
+|+++.+..+
T Consensus 238 ~~ele~~~~~ 247 (376)
T KOG1188|consen 238 IYELEDGSEE 247 (376)
T ss_pred EEEccCCChh
Confidence 9999988744
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=4.8e-14 Score=122.66 Aligned_cols=293 Identities=13% Similarity=0.186 Sum_probs=188.1
Q ss_pred ccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEe-eeecCCCccCCCCCcc
Q 012535 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF-DWNVHPEKAAGNGPIF 168 (461)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~v~ 168 (461)
+++...|..|. +.|+.|.|. ..|..+++++.|..|.+||+..+..+..+ ..|.. .+.
T Consensus 132 ~~l~~kL~~H~------------GcVntV~FN--~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~--------Nvf 189 (559)
T KOG1334|consen 132 LRLQKKLNKHK------------GCVNTVHFN--QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCN--------NVF 189 (559)
T ss_pred hhhhhcccCCC------------Cccceeeec--ccCceeeccCccceEEeehhhccCccccccccccc--------chh
Confidence 34455567777 779999999 66889999999999999999876544322 22211 122
Q ss_pred ccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-E
Q 012535 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-T 247 (461)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~ 247 (461)
...|.|..... -+++++.||.+++-. +....... .. ..+..|.+.|..++..|+.. .
T Consensus 190 -------QaKFiP~s~d~----------ti~~~s~dgqvr~s~-i~~t~~~e--~t--~rl~~h~g~vhklav~p~sp~~ 247 (559)
T KOG1334|consen 190 -------QAKFIPFSGDR----------TIVTSSRDGQVRVSE-ILETGYVE--NT--KRLAPHEGPVHKLAVEPDSPKP 247 (559)
T ss_pred -------hhhccCCCCCc----------CceeccccCceeeee-ecccccee--cc--eecccccCccceeeecCCCCCc
Confidence 22344432211 248999999999765 21111111 11 11368899999999999843 4
Q ss_pred EEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCC---cceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccc--cc
Q 012535 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT---EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--TH 321 (461)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 321 (461)
|.++ .|+.+.-+|+++......+. .-..+. -....++..|.....+++|+.|..+++||.+.-.... ..
T Consensus 248 f~S~geD~~v~~~Dlr~~~pa~~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~ 322 (559)
T KOG1334|consen 248 FLSCGEDAVVFHIDLRQDVPAEKFV-----CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGV 322 (559)
T ss_pred ccccccccceeeeeeccCCccceee-----eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccch
Confidence 5565 89999999998665443322 111122 2567999999887899999999999999988643210 00
Q ss_pred ccccccccCCCccccccccccceeEEEEccCC-CEEEEecCCeEEEEEccCC-C----------CCeeE-EeeccCcccc
Q 012535 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDYMTLKLWDINMD-S----------GPVAT-FQVHEHLRPK 388 (461)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g-~~l~s~~d~~i~vwd~~~~-~----------~~~~~-~~~~~~~~~~ 388 (461)
+..|..+.. .....-.|++++|+.++ .+|++-+|-.|+++.-... + ..+.. +++|.+...
T Consensus 323 ~~~f~p~hl------~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T- 395 (559)
T KOG1334|consen 323 LDKFCPHHL------VEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT- 395 (559)
T ss_pred hhhcCCccc------cccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-
Confidence 122221110 01112469999999654 5666677888999854431 2 22333 777776532
Q ss_pred ccccccCCCccceeeEE-EecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCccccccc
Q 012535 389 LCDLYENDSIFDKFECC-LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHFQ 451 (461)
Q Consensus 389 ~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (461)
|-.+- |-|...|+++|++-|.|.||+-++++.+ ..+++.+.-+....++|
T Consensus 396 ------------VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii-~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 396 ------------VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII-RFMEGDRHVVNCLEPHP 446 (559)
T ss_pred ------------cceeeeccCccceEEecCccceEEEEecchhHHH-HHhhcccceEeccCCCC
Confidence 11443 6788999999999999999999988655 56666665444444443
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=114.88 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=109.1
Q ss_pred ccccccCCCcEEeeeeecccCcccc----ceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 197 SSFPPGGVSSLRLPVVVTSQETNLV----AGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++++|.++|.+.+|| +...+.... .+.... ...|..+|.++.+.+.-..=++| .+..+..|++.......++.
T Consensus 167 lllaGyEsghvv~wd-~S~~~~~~~~~~~~kv~~~-~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWD-LSTGDKIIQLPQSSKVESP-NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred EEEEeccCCeEEEEE-ccCCceeeccccccccccc-hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 468899999999999 544321110 111111 26788999999998775555666 67788899887543322211
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
....-..-.|..+.+-||+ +++|+++.|++||+|..++... +..+.-|. ..|++++|+|
T Consensus 245 ----~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~p----LAVLkyHs------------agvn~vAfsp 303 (323)
T KOG0322|consen 245 ----KEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLNP----LAVLKYHS------------AGVNAVAFSP 303 (323)
T ss_pred ----ceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCCc----hhhhhhhh------------cceeEEEeCC
Confidence 0111134457889999999 9999999999999999998775 45555554 8899999999
Q ss_pred CCCEEEEec-CCeEEEEEc
Q 012535 352 NGRHILSRD-YMTLKLWDI 369 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~ 369 (461)
+...+|+++ |.+|-+|++
T Consensus 304 d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DCELMAAASKDARISLWKL 322 (323)
T ss_pred CCchhhhccCCceEEeeec
Confidence 999999987 799999986
No 221
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=5.4e-14 Score=123.76 Aligned_cols=182 Identities=18% Similarity=0.188 Sum_probs=129.9
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
..|.++.++.||.+.+.+ ......+. ..+|.+.+.+-.|+|+|.-|+++ +||.|++|.....-..
T Consensus 74 ~~d~~~i~s~DGkf~il~--------k~~rVE~s-v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS----- 139 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILN--------KSARVERS-ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS----- 139 (737)
T ss_pred CcceEEEEcCCceEEEec--------ccchhhhh-hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH-----
Confidence 347789999999999866 11222222 37899999999999999999987 8999999986532221
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
++-.....|.|++|.|+..+.+.+.+ +.+.|=-+..... +- .+..|.+-|.++.|++.
T Consensus 140 ----tl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k----~i------------~WkAHDGiiL~~~W~~~ 197 (737)
T KOG1524|consen 140 ----TVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK----II------------RWRAHDGLVLSLSWSTQ 197 (737)
T ss_pred ----HHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc----ee------------EEeccCcEEEEeecCcc
Confidence 23346788999999999855555433 3344433322211 12 23445589999999999
Q ss_pred CCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 353 g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
...+++|+ |-..+|||-. +..+..-..|+.++ ++++|.|+ +.++.++. +.+++=..+.|
T Consensus 198 s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~I---------------TSva~npd-~~~~v~S~-nt~R~~~p~~G 257 (737)
T KOG1524|consen 198 SNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAI---------------TSVAFNPE-KDYLLWSY-NTARFSSPRVG 257 (737)
T ss_pred ccceeecCCceeEEeeccc--CcccccCChhccce---------------eeeeeccc-cceeeeee-eeeeecCCCcc
Confidence 99999976 6999999985 78888878888765 59999999 66677765 35554444443
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.3e-12 Score=121.76 Aligned_cols=206 Identities=12% Similarity=0.117 Sum_probs=127.0
Q ss_pred cceEEEEEeecCCCcEEEEEe---CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLST---NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+...+|+ +||+.|+..+ .+..|.+|++.+++...+..... ... ...|+|+|+.+
T Consensus 199 ~~~~~p~wS--PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---------~~~-------~~~~SPDG~~L--- 257 (429)
T PRK03629 199 QPLMSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---------HNG-------APAFSPDGSKL--- 257 (429)
T ss_pred CceeeeEEc--CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---------CcC-------CeEECCCCCEE---
Confidence 558999999 5677887654 34579999998887554433221 111 56999999986
Q ss_pred ccCCCCCccccccCCC--cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-CCeEEEE--EccC
Q 012535 190 FGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLW--NLEI 263 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~iw--d~~~ 263 (461)
+++...++ .|.+|| +... ...+. ..+...+....|+|+|+.|+.. + ++...+| |+.+
T Consensus 258 --------a~~~~~~g~~~I~~~d-~~tg------~~~~l--t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 258 --------AFALSKTGSLNLYVMD-LASG------QIRQV--TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred --------EEEEcCCCCcEEEEEE-CCCC------CEEEc--cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 23334444 477777 3221 11111 2233467789999999988766 3 4555555 5553
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---CeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
+. ... +...........|+|+| +.|+..+.+ ..|.+||+.++.. ..+...
T Consensus 321 g~-~~~--------lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~~------------ 373 (429)
T PRK03629 321 GA-PQR--------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTDT------------ 373 (429)
T ss_pred CC-eEE--------eecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCCC------------
Confidence 32 222 22233345678999999 777765543 3588899987753 222211
Q ss_pred ccceeEEEEccCCCEEEEec-C---CeEEEEEccCCCCCeeEEeeccCcc
Q 012535 341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLR 386 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~~~~~~ 386 (461)
.......|+|||++|+.++ + ..+.++++. +.....+..|.+.+
T Consensus 374 -~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~~ 420 (429)
T PRK03629 374 -FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV 420 (429)
T ss_pred -CCCCCceECCCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCCc
Confidence 1134578999999998754 4 246777774 66667777776654
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=9.2e-13 Score=122.82 Aligned_cols=210 Identities=15% Similarity=0.141 Sum_probs=128.3
Q ss_pred cceEEEEEeecCCCcEEEEEeC---CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+.+.+|+ +||+.|+..+. ...|.+||+.+++...+.... +... ..+|+|+|+.+
T Consensus 196 ~~v~~p~wS--PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~---------g~~~-------~~~~SPDG~~l--- 254 (427)
T PRK02889 196 EPIISPAWS--PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK---------GSNS-------APAWSPDGRTL--- 254 (427)
T ss_pred CCcccceEc--CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC---------CCcc-------ceEECCCCCEE---
Confidence 558899999 56778887763 246999999988765543221 1111 56999999875
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 267 (461)
+++.+.++...+|. +... ... .+.+ ..+........|+|+|+.|+.. .++...+|.+......
T Consensus 255 --------a~~~~~~g~~~Iy~-~d~~-~~~----~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 255 --------AVALSRDGNSQIYT-VNAD-GSG----LRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred --------EEEEccCCCceEEE-EECC-CCC----cEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 34567778877776 3211 111 1111 3344455678899999988765 3566777765422222
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC---eEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
...+ ... .......+|+|+| +.|+..+.++ .|.+||+.++.. ..+... ...
T Consensus 320 ~~~l-----t~~--g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~~-------------~~~ 373 (427)
T PRK02889 320 AQRV-----TFT--GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQV-----TALTDT-------------TRD 373 (427)
T ss_pred eEEE-----ecC--CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCe-----EEccCC-------------CCc
Confidence 1111 122 2233467899999 8888776654 699999987753 222211 123
Q ss_pred eEEEEccCCCEEEEec-C-Ce--EEEEEccCCCCCeeEEeeccCcc
Q 012535 345 SDIKFARNGRHILSRD-Y-MT--LKLWDINMDSGPVATFQVHEHLR 386 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-d-~~--i~vwd~~~~~~~~~~~~~~~~~~ 386 (461)
....|+|||++|+.+. + |. +.+.++ .+.....+..+.+.+
T Consensus 374 ~~p~~spdg~~l~~~~~~~g~~~l~~~~~--~g~~~~~l~~~~g~~ 417 (427)
T PRK02889 374 ESPSFAPNGRYILYATQQGGRSVLAAVSS--DGRIKQRLSVQGGDV 417 (427)
T ss_pred cCceECCCCCEEEEEEecCCCEEEEEEEC--CCCceEEeecCCCCC
Confidence 5679999999988754 3 33 555555 356666665554443
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=6.7e-14 Score=121.03 Aligned_cols=227 Identities=13% Similarity=0.159 Sum_probs=166.4
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
-..+.++ .+|++++.|+..|.|..+|+.++++...+..... |. .+.|..+..+
T Consensus 132 PY~~~yt--rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et---------v~-------Dv~~LHneq~--------- 184 (545)
T KOG1272|consen 132 PYHLDYT--RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET---------VR-------DVTFLHNEQF--------- 184 (545)
T ss_pred Ceeeeec--CCccEEEecCCccceeeeecccceeeeeeehhhh---------hh-------hhhhhcchHH---------
Confidence 4567776 7899999999999999999999988776655321 22 4566655554
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeecc
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
++......+.+|| ..+ ...-|.+. ...|..+.|-|..-+|+++ ..|.++.-|+.+++..-
T Consensus 185 ----~AVAQK~y~yvYD----~~G-tElHClk~-----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa----- 245 (545)
T KOG1272|consen 185 ----FAVAQKKYVYVYD----NNG-TELHCLKR-----HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA----- 245 (545)
T ss_pred ----HHhhhhceEEEec----CCC-cEEeehhh-----cCchhhhcccchhheeeecccCCceEEEeechhhhhH-----
Confidence 6777888899998 222 22233322 2678889999998888888 79999999999877553
Q ss_pred CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 274 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
.+....+.+..+.-+|-+ ..+-+|..+|+|.+|.....+. +..+-.|. ++|.++++.++|
T Consensus 246 ---~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skeP----LvKiLcH~------------g~V~siAv~~~G 305 (545)
T KOG1272|consen 246 ---SIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEP----LVKILCHR------------GPVSSIAVDRGG 305 (545)
T ss_pred ---HHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcch----HHHHHhcC------------CCcceEEECCCC
Confidence 344456778888899988 8999999999999999888765 33444444 899999999999
Q ss_pred CEEEEec-CCeEEEEEccCCCCCeeEEee-ccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 354 RHILSRD-YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 354 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
+|+++++ |..++|||+++.. .+.++.. |.. ..+++|..| +||. +....+.||.=
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~-ql~t~~tp~~a-----------------~~ls~Sqkg-lLA~-~~G~~v~iw~d 361 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFY-QLHTYRTPHPA-----------------SNLSLSQKG-LLAL-SYGDHVQIWKD 361 (545)
T ss_pred cEEeecccccceeEeeecccc-ccceeecCCCc-----------------ccccccccc-ceee-ecCCeeeeehh
Confidence 9999955 8999999999744 4433333 221 267777444 3443 44457889964
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.2e-12 Score=111.74 Aligned_cols=112 Identities=17% Similarity=0.267 Sum_probs=87.8
Q ss_pred CCcceEEEEEeCCCCCeEE--EEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEE
Q 012535 281 LTEVITSAEFHPTHCNMLA--YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 281 ~~~~v~~v~~~p~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
..++|.++.|+|++ +-|+ .|-.-..+.|||++..- +..+.. ++-+++-|+|.|++|+.
T Consensus 269 k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~-----v~df~e--------------gpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP-----VFDFPE--------------GPRNTAFFNPHGNIILL 328 (566)
T ss_pred CCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE-----eEeCCC--------------CCccceEECCCCCEEEE
Confidence 36889999999998 5554 45557789999998653 333332 56788999999999887
Q ss_pred ec--C--CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC------CCeEEEEecC
Q 012535 359 RD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS 428 (461)
Q Consensus 359 ~~--d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~ 428 (461)
++ . |.+-|||+.+ .+++..+...... -+.|+|||.+++|++. |+.++||+..
T Consensus 329 AGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 53 2 9999999996 7888887765542 6899999999998873 7899999998
Q ss_pred CC
Q 012535 429 EG 430 (461)
Q Consensus 429 ~~ 430 (461)
..
T Consensus 391 G~ 392 (566)
T KOG2315|consen 391 GS 392 (566)
T ss_pred Cc
Confidence 54
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=4.1e-12 Score=105.02 Aligned_cols=182 Identities=10% Similarity=0.181 Sum_probs=123.3
Q ss_pred CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcc
Q 012535 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (461)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (461)
..|.||| .....+... .....+|.++.+.++ .+++.-++.|.+|...+.-+....++ +.. .+..
T Consensus 75 NkviIWD-------D~k~~~i~e--l~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~e----t~~-NPkG 138 (346)
T KOG2111|consen 75 NKVIIWD-------DLKERCIIE--LSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIE----TRS-NPKG 138 (346)
T ss_pred ceEEEEe-------cccCcEEEE--EEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeee----ccc-CCCc
Confidence 5899999 122222222 244578889988765 56666778999999874333322221 111 2222
Q ss_pred eEEEEEeCCCCCeEEE-EecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-C
Q 012535 285 ITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M 362 (461)
Q Consensus 285 v~~v~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~ 362 (461)
+.++.-+... .+||. |-.-|.|.|-|+.....- +......|.+.|.+++.+.+|..+|+++. |
T Consensus 139 lC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~--------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 139 LCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPN--------------APSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred eEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcC--------------CceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 3444333333 45554 445689999999775421 12234455689999999999999999885 4
Q ss_pred -eEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 363 -TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 363 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
-|||||..+ +.++..++...... +|++++|||+..+||++|+.|+|+||.++...
T Consensus 204 TLIRIFdt~~-g~~l~E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 204 TLIRIFDTED-GTLLQELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEEEcCC-CcEeeeeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 589999996 88888876543322 24699999999999999999999999998643
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=4e-13 Score=110.09 Aligned_cols=116 Identities=16% Similarity=0.364 Sum_probs=87.0
Q ss_pred cccceeeEEeCCCCCEEEEe---CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec---CC
Q 012535 232 HDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KG 305 (461)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg 305 (461)
..+.|.+++|+|+++.|++. .++.|.+||++ .+.... + +...++.+.|+|+| ++|++++. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence 34569999999999987654 47899999997 333322 2 35567899999999 88888875 46
Q ss_pred eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-------CCeEEEEEccCCCCCeeE
Q 012535 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDINMDSGPVAT 378 (461)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-------d~~i~vwd~~~~~~~~~~ 378 (461)
.|.+||.++.+. +..++. ..++.++|+|||++|+++. |+.++||+.. |+.+..
T Consensus 126 ~l~~wd~~~~~~----i~~~~~--------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~~ 185 (194)
T PF08662_consen 126 DLEFWDVRKKKK----ISTFEH--------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLYK 185 (194)
T ss_pred EEEEEECCCCEE----eecccc--------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeEe
Confidence 799999997654 333332 3478999999999999852 5889999985 665554
Q ss_pred E
Q 012535 379 F 379 (461)
Q Consensus 379 ~ 379 (461)
.
T Consensus 186 ~ 186 (194)
T PF08662_consen 186 K 186 (194)
T ss_pred c
Confidence 4
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=8.9e-12 Score=116.85 Aligned_cols=153 Identities=10% Similarity=0.084 Sum_probs=95.4
Q ss_pred ceeeEEeCCCCCEEEEe--CCC--eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CC--eE
Q 012535 235 HINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SI 307 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i 307 (461)
.+...+|+|+|+.|+.. .++ .|.+||+.++. .. .+..+........|+|+| +.|+..+. +| .|
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~--------~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~I 316 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TT--------RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQL 316 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eE--------EccCCCCccCceeEcCCC-CEEEEEECCCCCCeE
Confidence 34456788998877643 344 47777877443 22 233345556779999999 77776653 33 68
Q ss_pred EEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C---CeEEEEEccCCCCCeeEEeecc
Q 012535 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
.++|+..+.. ..+.... ..+....|+|||++|+... + ..|.+||+.. .....+.. .
T Consensus 317 y~~d~~g~~~-----~~lt~~~------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~-~ 376 (435)
T PRK05137 317 YVMNADGSNP-----RRISFGG------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTS-G 376 (435)
T ss_pred EEEECCCCCe-----EEeecCC------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccC-C
Confidence 8888776543 2221111 3456788999999998743 2 4688888753 33333321 1
Q ss_pred CccccccccccCCCccceeeEEEecCCCEEEEecCC------CeEEEEecCCCCc
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSA 432 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~ 432 (461)
... ....|+|||+.|+..+.+ ..|+++++..+..
T Consensus 377 ~~~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 377 FLV---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCC---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 111 278999999988765432 3688888876544
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=1.1e-10 Score=105.84 Aligned_cols=259 Identities=10% Similarity=0.128 Sum_probs=154.8
Q ss_pred ceEEEEEeecCCCcEEEEEeC----CCeEEEEEccC--CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 114 KINKIRWCQSANSALYLLSTN----DKTIKLWKVQE--KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~----d~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
....++++ +++++|+++.. ++.|..|++.. +.+..+....... ..|..++++|+++.+
T Consensus 38 ~Ps~l~~~--~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-------------~~p~~i~~~~~g~~l- 101 (345)
T PF10282_consen 38 NPSWLAVS--PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG-------------SSPCHIAVDPDGRFL- 101 (345)
T ss_dssp SECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS-------------SCEEEEEECTTSSEE-
T ss_pred CCceEEEE--eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC-------------CCcEEEEEecCCCEE-
Confidence 35678888 45678888765 67999999876 4544443332111 011157888999986
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeee---------cccccceeeEEeCCCCCEEEEe--CCCeE
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA---------HAHDYHINSISNNSDGETFISA--DDLRI 256 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~i~~~~~~~~l~~~--~d~~i 256 (461)
+++...+|.+.+++ +.... .......... ........++.++|+++++++. ....|
T Consensus 102 ----------~vany~~g~v~v~~-l~~~g--~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 102 ----------YVANYGGGSVSVFP-LDDDG--SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp ----------EEEETTTTEEEEEE-ECTTS--EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred ----------EEEEccCCeEEEEE-ccCCc--ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 44556789999998 54321 1111111110 1223457789999999988886 57789
Q ss_pred EEEEccCCCCceee-eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECC--CcccccccccccccccCCCc
Q 012535 257 NLWNLEISNQSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGT 333 (461)
Q Consensus 257 ~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~ 333 (461)
.+|+++.....+.. ..+ .+ ......+.++|+|++..+.++.-.+++|.++++. .+... .+........
T Consensus 169 ~~~~~~~~~~~l~~~~~~---~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~~~~--- 239 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSI---KV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--EIQTISTLPE--- 239 (345)
T ss_dssp EEEEE-TTS-TEEEEEEE---EC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESCET---
T ss_pred EEEEEeCCCceEEEeecc---cc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--EEEEeeeccc---
Confidence 99999865422211 100 12 2455679999999983344555668899999988 33221 1111111100
Q ss_pred cccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEe---eccCccccccccccCCCccceeeEEEec
Q 012535 334 RSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQ---VHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 334 ~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
.+.+ ......++++|||++|++++ .+.|.+|+++.....+..+. ...... ..++++|
T Consensus 240 --~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P---------------r~~~~s~ 301 (345)
T PF10282_consen 240 --GFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP---------------RHFAFSP 301 (345)
T ss_dssp --TSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE---------------EEEEE-T
T ss_pred --cccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc---------------cEEEEeC
Confidence 0000 12578899999999999876 38999999953233333332 211111 3899999
Q ss_pred CCCEEEEec-CCCeEEEEecC
Q 012535 409 DGGRVATGS-YSNLFRVFGCS 428 (461)
Q Consensus 409 ~~~~l~s~~-~dg~i~iw~~~ 428 (461)
+|++|+++. .++.|.+|+++
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEecCCCeEEEEEEe
Confidence 999988775 67899999885
No 230
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=2.6e-10 Score=96.68 Aligned_cols=291 Identities=12% Similarity=0.168 Sum_probs=182.5
Q ss_pred CceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecC---CcEEEEEcCCC--CCCCCcccccccccccccCCc
Q 012535 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDT--RDNGGQRRDLEMMDYSMSRHP 88 (461)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~d---g~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~ 88 (461)
...|++..--++....+...+.+..+=|+|+|+++.|.++..+ |.|.-|.++.. ...
T Consensus 18 I~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt------------------ 79 (346)
T COG2706 18 IYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT------------------ 79 (346)
T ss_pred eEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE------------------
Confidence 4668887444566666777888999999999999999988654 77888877653 211
Q ss_pred cccccc--cccCCCcchhhccccccccceEEEEEeecCCCcEEEEEe-CCCeEEEEEccC-CceeEEeeeecCCCccCCC
Q 012535 89 EFRYKT--EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGN 164 (461)
Q Consensus 89 ~~~~~~--~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~ 164 (461)
++. ...++. -..++++ .++++++++. ..|.|.++-++. |.+......-.+
T Consensus 80 ---~ln~~~~~g~~--------------p~yvsvd--~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h------- 133 (346)
T COG2706 80 ---FLNRQTLPGSP--------------PCYVSVD--EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH------- 133 (346)
T ss_pred ---EeeccccCCCC--------------CeEEEEC--CCCCEEEEEEccCceEEEEEcccCCccccceeeeec-------
Confidence 111 122332 3778887 6788888885 568899998864 433322221100
Q ss_pred CCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC
Q 012535 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (461)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (461)
...... . +.....+....+.|+
T Consensus 134 ---------------------------------------------------~g~~p~--~-----rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 134 ---------------------------------------------------TGSGPH--E-----RQESPHVHSANFTPD 155 (346)
T ss_pred ---------------------------------------------------CCCCCC--c-----cccCCccceeeeCCC
Confidence 000000 0 111233667889999
Q ss_pred CCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cCCeEEEEECCCccccccc
Q 012535 245 GETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTH 321 (461)
Q Consensus 245 ~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 321 (461)
+++|++. ..-.|.+|++..+..... .+..+ ......+.|+|+|++ ++....+ .+++|.+|......-.
T Consensus 156 ~~~l~v~DLG~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~--- 226 (346)
T COG2706 156 GRYLVVPDLGTDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGK--- 226 (346)
T ss_pred CCEEEEeecCCceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCce---
Confidence 9999987 466899999984432221 11122 345667999999999 6665544 5999999998874111
Q ss_pred ccccccccCCCccccccccccceeEEEEccCCCEEEEecC--CeEEEEEccCCCCCeeEEeeccCccccccccccCCCcc
Q 012535 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 399 (461)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (461)
+..++...... .-|.+ ..+...+..++||++|.+++. ..|.+|.+...+..+............-
T Consensus 227 ~~~lQ~i~tlP--~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P---------- 293 (346)
T COG2706 227 FEELQTIDTLP--EDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP---------- 293 (346)
T ss_pred EEEeeeeccCc--cccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC----------
Confidence 11111110000 00111 146788999999999999874 7999999986545444443322111000
Q ss_pred ceeeEEEecCCCEEEEecCC-CeEEEEecCCC
Q 012535 400 DKFECCLSGDGGRVATGSYS-NLFRVFGCSEG 430 (461)
Q Consensus 400 ~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~ 430 (461)
..+.+++++++|+++..+ ..|.+|.++..
T Consensus 294 --R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 294 --RDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred --ccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 278999999999888754 56899988754
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=2.7e-13 Score=119.50 Aligned_cols=188 Identities=13% Similarity=0.125 Sum_probs=128.9
Q ss_pred CCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccc--
Q 012535 242 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-- 318 (461)
Q Consensus 242 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~-- 318 (461)
.|.+--++.| .-|.|.+.|... ....+++.. ...-.+..++++.|-|.++.+++++-.+|.+.+||..-....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3456667888 889999998774 222111110 011135789999999988789999999999999986421100
Q ss_pred --ccc--------ccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccc
Q 012535 319 --DTH--------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (461)
Q Consensus 319 --~~~--------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~ 387 (461)
... +.+-..+....+...+.--.+.|...+|+|||++||+.+ ||.+||||..+ .+++..++..-+..
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL- 335 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL- 335 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence 000 111111111123333333346899999999999999966 79999999986 56655554333322
Q ss_pred cccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcccccc
Q 012535 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
++++|||||+||++|++|-.|.||.+..++.+ ..-++|...+..+...
T Consensus 336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV-ARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV-ARGQGHKSWVSVVAFD 383 (636)
T ss_pred --------------EEEEEcCCccEEEecCCcceEEEEEeccceEE-EeccccccceeeEeec
Confidence 49999999999999999999999999987655 6778888877766554
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.9e-12 Score=116.47 Aligned_cols=214 Identities=14% Similarity=0.196 Sum_probs=129.1
Q ss_pred CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccc--cCCCcEEeeeee
Q 012535 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP--GGVSSLRLPVVV 213 (461)
Q Consensus 136 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~i~i~~~~ 213 (461)
..|.+||.+......+.... ..+. ..+|+|+|+.+ +++. ..+..+.+|+ +
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~---------~~~~-------~p~wSPDG~~l-----------a~~s~~~g~~~i~i~d-l 230 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSP---------QPLM-------SPAWSPDGSKL-----------AYVTFESGRSALVIQT-L 230 (429)
T ss_pred eeEEEEcCCCCCCEEeecCC---------Ccee-------eeEEcCCCCEE-----------EEEEecCCCcEEEEEE-C
Confidence 36888888766544433221 1122 67999999986 1222 2345677777 4
Q ss_pred cccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCC--eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEE
Q 012535 214 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 289 (461)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 289 (461)
...+. ... ......+..++|+|+|+.|+.. .++ .|.+||++++. ..+ +..+...+....
T Consensus 231 ~~G~~------~~l--~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~--------lt~~~~~~~~~~ 293 (429)
T PRK03629 231 ANGAV------RQV--ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQ--------VTDGRSNNTEPT 293 (429)
T ss_pred CCCCe------EEc--cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEE--------ccCCCCCcCceE
Confidence 22111 111 1222334568999999988864 344 58889987543 222 223345677899
Q ss_pred EeCCCCCeEEEEecC-Ce--EEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C---C
Q 012535 290 FHPTHCNMLAYSSSK-GS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---M 362 (461)
Q Consensus 290 ~~p~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d---~ 362 (461)
|+|+| +.|+..+.+ +. |.++|+.++.. ..+.... .......|+|||++|+... + .
T Consensus 294 wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~~~------------~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 294 WFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-----QRITWEG------------SQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred ECCCC-CEEEEEeCCCCCceEEEEECCCCCe-----EEeecCC------------CCccCEEECCCCCEEEEEEccCCCc
Confidence 99999 777666654 44 44446655532 2221111 2356788999999998743 2 4
Q ss_pred eEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe---EEEEecCCC
Q 012535 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEG 430 (461)
Q Consensus 363 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i~iw~~~~~ 430 (461)
.|.+||+.. ++ ...+.... .. ....|+|||++|+.++.++. +++++++.+
T Consensus 356 ~I~~~dl~~-g~-~~~Lt~~~-~~---------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 356 HIAKQDLAT-GG-VQVLTDTF-LD---------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred eEEEEECCC-CC-eEEeCCCC-CC---------------CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 688899875 43 33343211 11 26789999999998887764 778888544
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.6e-12 Score=120.32 Aligned_cols=204 Identities=13% Similarity=0.099 Sum_probs=124.1
Q ss_pred cceEEEEEeecCCCcEEEEEeC---CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+.+.+|+ +|++.|+..+. +..|.+|++.+++...+.... +... ...|+|+|+.+
T Consensus 204 ~~v~~p~wS--pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~---------g~~~-------~~~~SpDG~~l--- 262 (433)
T PRK04922 204 EPILSPAWS--PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR---------GING-------APSFSPDGRRL--- 262 (433)
T ss_pred CccccccCC--CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC---------CCcc-------CceECCCCCEE---
Confidence 558899999 56778887763 347999999887755443221 1111 56899999975
Q ss_pred ccCCCCCccccccCCC--cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCe--EEEEEccC
Q 012535 190 FGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR--INLWNLEI 263 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~--i~iwd~~~ 263 (461)
+++.+.++ .|.+|| +.... ..+ +..+.......+|+|+|+.|+.+ .++. |.++++.+
T Consensus 263 --------~~~~s~~g~~~Iy~~d-~~~g~------~~~--lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 263 --------ALTLSRDGNPEIYVMD-LGSRQ------LTR--LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred --------EEEEeCCCCceEEEEE-CCCCC------eEE--CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 23444444 577777 32211 111 13343445678999999988866 3454 55566654
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC---eEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
++ ...+ +. .......++|+|+| +.|+..+.++ .|.+||+.++.. ..+...
T Consensus 326 g~-~~~l------t~--~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~~------------ 378 (433)
T PRK04922 326 GS-AERL------TF--QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTPG------------ 378 (433)
T ss_pred CC-eEEe------ec--CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCe-----EECCCC------------
Confidence 33 2221 11 22334578999999 7777665443 699999987653 222111
Q ss_pred ccceeEEEEccCCCEEEEec-C---CeEEEEEccCCCCCeeEEeeccC
Q 012535 341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
.......|+|||++|+..+ + +.|.++++. +.....+..+.+
T Consensus 379 -~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g 423 (433)
T PRK04922 379 -SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG 423 (433)
T ss_pred -CCCCCceECCCCCEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence 1234568999999888643 2 457777774 555566655443
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.48 E-value=4.5e-11 Score=99.40 Aligned_cols=290 Identities=12% Similarity=0.105 Sum_probs=176.8
Q ss_pred ccceEEEEEcCCCCEEE-EeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 35 VDIISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
-+.|.-+.|..|..+++ ....++.|.+|++...+ ....+.... +
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-----------------------w~ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-----------------------WYCKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce-----------------------eEEEeccCC------------C
Confidence 35677888988877655 45688899999986432 233344444 6
Q ss_pred ceEEEEEeecCCCc-EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc-
Q 012535 114 KINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG- 191 (461)
Q Consensus 114 ~v~~v~~~p~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~- 191 (461)
++.+++|+ ++|+ .|.+...|-.|.+|.+.+.+...+..... .+. .++|+|+|++..++..
T Consensus 93 gls~~~WS--PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~---------~~k-------g~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 93 GLSSISWS--PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT---------NVK-------GYAFHPDGQFCAILSRR 154 (447)
T ss_pred cceeeeEC--CCcceEeeeecceeEEEEEEeccceeEEeccccc---------Cce-------eEEECCCCceeeeeecc
Confidence 79999999 4564 55556789999999998876544332211 111 6688888887654421
Q ss_pred -CCC-----------------CC-----ccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEE
Q 012535 192 -CAS-----------------ND-----SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (461)
Q Consensus 192 -~~~-----------------~~-----~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 248 (461)
+.+ .+ -+--+-++..+.+||. -. ...... -...-.+..++|+|.+++|
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~----~L---eykv~a--Ye~~lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN----VL---EYKVYA--YERGLGLKFVEWSPCNQFL 225 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc----hh---hheeee--eeeccceeEEEeccccceE
Confidence 110 00 0111223455677771 10 000001 1122578899999999999
Q ss_pred EEe-CCCeEEEEEccCCC---------------------------------------------------------Cceee
Q 012535 249 ISA-DDLRINLWNLEISN---------------------------------------------------------QSFNI 270 (461)
Q Consensus 249 ~~~-~d~~i~iwd~~~~~---------------------------------------------------------~~~~~ 270 (461)
+.| .|+.+++.+--+.+ ....+
T Consensus 226 avGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~ 305 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKV 305 (447)
T ss_pred EeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceee
Confidence 999 89999875432110 00011
Q ss_pred eccCC-CCCCCCCcceEEEEEeCCCCCeEEEEec--CCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 271 VDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 271 ~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
...|| .......-.+.-++|++|. .++++-.. -..+-+||++..++ +..-... .+|...
T Consensus 306 ~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l-----~avLiQk------------~piraf 367 (447)
T KOG4497|consen 306 HKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL-----HAVLIQK------------HPIRAF 367 (447)
T ss_pred ecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh-----hhhhhhc------------cceeEE
Confidence 11122 2223334456789999997 66666433 25689999998764 2222222 579999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (461)
.|+|....|+.+. ...+++|...- ...+... ..+ +.|..+.|.-+|..++-.+.|-.
T Consensus 368 ~WdP~~prL~vctg~srLY~W~psg-~~~V~vP--~~G--------------F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 368 EWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVP--KKG--------------FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EeCCCCceEEEEcCCceEEEEcCCC-ceEEecC--CCC--------------ceeeeEEecCCCcEEEEEcCCce
Confidence 9999877777654 47899998762 1211111 111 23458999999999999998854
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=3.3e-10 Score=102.66 Aligned_cols=273 Identities=12% Similarity=0.138 Sum_probs=158.8
Q ss_pred cccceEEEEEcCCCCEEEEeec----CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
-.....-++++|++++|.+... +|.|..|++..... ....+.......
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g--------- 86 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG--------- 86 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS---------
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC---------
Confidence 3455677999999999998876 57899999876421 011111221111
Q ss_pred ccccceEEEEEeecCCCcEEEEEe-CCCeEEEEEccC-CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
.....++++ +++++++++. .+|+|.++++.. +.+............. ..........+-.+.++|+|+++
T Consensus 87 ---~~p~~i~~~--~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g--~~~~rq~~~h~H~v~~~pdg~~v- 158 (345)
T PF10282_consen 87 ---SSPCHIAVD--PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG--PNPDRQEGPHPHQVVFSPDGRFV- 158 (345)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE--SSTTTTSSTCEEEEEE-TTSSEE-
T ss_pred ---CCcEEEEEe--cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC--CcccccccccceeEEECCCCCEE-
Confidence 225678887 5677888886 699999999986 4444432211100000 00000000111167899999986
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~ 265 (461)
+++.-....|.+|+ +........ . ............+.++|+|+++++... .++.|.++++....
T Consensus 159 ----------~v~dlG~D~v~~~~-~~~~~~~l~-~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 159 ----------YVPDLGADRVYVYD-IDDDTGKLT-P-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp ----------EEEETTTTEEEEEE-E-TTS-TEE-E-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ----------EEEecCCCEEEEEE-EeCCCceEE-E-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC
Confidence 34455566889888 433332111 1 112223445678899999999988776 59999999998333
Q ss_pred Cceeee---ccCCCCCCCCCcceEEEEEeCCCCCeEEE-EecCCeEEEEECCC--cccccccccccccccCCCccccccc
Q 012535 266 QSFNIV---DVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 266 ~~~~~~---~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
..+... ...+.... .......++++|++ ++|++ ....+.|.+|++.. +.+. .+..+....
T Consensus 226 g~~~~~~~~~~~~~~~~-~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l~--~~~~~~~~G---------- 291 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFT-GENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTLT--LVQTVPTGG---------- 291 (345)
T ss_dssp TEEEEEEEEESCETTSC-SSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTEE--EEEEEEESS----------
T ss_pred CceeEEEEeeecccccc-ccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCceE--EEEEEeCCC----------
Confidence 222221 11111111 12367899999999 66555 44578899999943 3321 122222211
Q ss_pred cccceeEEEEccCCCEEEEec-C-CeEEEEEccC
Q 012535 340 IIASISDIKFARNGRHILSRD-Y-MTLKLWDINM 371 (461)
Q Consensus 340 h~~~v~~l~~s~~g~~l~s~~-d-~~i~vwd~~~ 371 (461)
.....+.++|+|++|++++ + +.|.+|+++.
T Consensus 292 --~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 292 --KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred --CCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 3478999999999999876 3 8999999863
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.1e-11 Score=105.43 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=96.0
Q ss_pred eeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC
Q 012535 236 INSISNNSD--GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 236 v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 312 (461)
++++.|-+. ...|+++ .-+.+++||.+.+..++..++ -....++++...|.+ +++++|..-|.+..+|+
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-------~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~ 276 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-------FLENPISSTGLTPSG-NFIYTGNTKGQLAKFDL 276 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-------cccCcceeeeecCCC-cEEEEecccchhheecc
Confidence 356677766 7788998 799999999998887776443 347789999999999 99999999999999999
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCee
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVA 377 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~ 377 (461)
+.+... ...+.+ ..+.|+++..+|.+++|++++ |..|||+|+++ .+++.
T Consensus 277 r~~kl~---g~~~kg------------~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~ 326 (412)
T KOG3881|consen 277 RGGKLL---GCGLKG------------ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLH 326 (412)
T ss_pred cCceee---ccccCC------------ccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhh
Confidence 998763 122333 348999999999999999977 89999999996 45443
No 237
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=4.8e-11 Score=106.02 Aligned_cols=279 Identities=14% Similarity=0.176 Sum_probs=163.1
Q ss_pred EEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEE
Q 012535 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (461)
Q Consensus 39 ~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (461)
+-+.|||-|.||+|--..| |.+|-=..-. ....| .| ..|.-+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-----------------------r~~RF-~H-------------p~Vq~i 255 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFD-----------------------RIQRF-YH-------------PGVQFI 255 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHH-----------------------HHHhc-cC-------------CCceee
Confidence 5689999999999988776 7888643221 22222 23 338899
Q ss_pred EEeecCCCcEEEEEeC-----------CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 119 RWCQSANSALYLLSTN-----------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 119 ~~~p~~~~~~l~~~~~-----------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
.||| +.+||++-+. -..++|||+.+|.+++.+.....+ .+.++ -..||.|+++.
T Consensus 256 dfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-------~~~WP-----~frWS~DdKy~- 320 (698)
T KOG2314|consen 256 DFSP--NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-------YLKWP-----IFRWSHDDKYF- 320 (698)
T ss_pred ecCC--ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-------ccccc-----eEEeccCCcee-
Confidence 9995 5669988651 257999999999887766553111 11111 34788888874
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC----Ce------
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD----LR------ 255 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d----~~------ 255 (461)
+.-....|.+|+ ...... ...+ .-.-..|....|+|.+++||.- .. ..
T Consensus 321 ------------Arm~~~sisIyE-tpsf~l-ld~K------slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ev 380 (698)
T KOG2314|consen 321 ------------ARMTGNSISIYE-TPSFML-LDKK------SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEV 380 (698)
T ss_pred ------------EEeccceEEEEe-cCceee-eccc------ccCCccccCcccCCCcceEEEEcccccCCcceEEEEec
Confidence 333335566665 111000 0000 1112345555666665555431 10 11
Q ss_pred ----------------------------------------------EEEEEccCCCCceeeeccCCCCCCCCCcceEEEE
Q 012535 256 ----------------------------------------------INLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 289 (461)
Q Consensus 256 ----------------------------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 289 (461)
+.|+.++....++. .-.....|...+
T Consensus 381 Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve--------~velke~vi~Fa 452 (698)
T KOG2314|consen 381 PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE--------VVELKESVIAFA 452 (698)
T ss_pred CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce--------eeecchheeeee
Confidence 11122211111111 112456788999
Q ss_pred EeCCCCCeEEEEe-c--CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEe---c-CC
Q 012535 290 FHPTHCNMLAYSS-S--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---D-YM 362 (461)
Q Consensus 290 ~~p~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~---~-d~ 362 (461)
|.|.| ..+++-+ . ..++.+|-+.+.......+..++. ...+.+.|+|.|++++.+ + .|
T Consensus 453 WEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--------------~~~N~vfwsPkG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 453 WEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--------------KFANTVFWSPKGRFVVVAALVSRRG 517 (698)
T ss_pred eccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--------------cccceEEEcCCCcEEEEEEeccccc
Confidence 99999 5554433 3 357889988754333333445544 247889999999999975 3 38
Q ss_pred eEEEEEccCCCCCe-eEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC------CCeEEEEecCCC
Q 012535 363 TLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCSEG 430 (461)
Q Consensus 363 ~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~ 430 (461)
.+.++|+.. .... .....|... ..+.|.|.|+|+++++. |.--+||++...
T Consensus 518 ~l~F~D~~~-a~~k~~~~~eh~~a----------------t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 518 DLEFYDTDY-ADLKDTASPEHFAA----------------TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred ceEEEecch-hhhhhccCcccccc----------------ccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 999999974 1211 111223322 37899999999999875 556678887743
No 238
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=7.5e-13 Score=117.04 Aligned_cols=181 Identities=20% Similarity=0.172 Sum_probs=129.0
Q ss_pred ecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC-CCCeEEEEecCCe
Q 012535 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-HCNMLAYSSSKGS 306 (461)
Q Consensus 229 ~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~dg~ 306 (461)
+.||++-|+++.|+.+|.+|++| +|-.+.|||.-..+....+ -.+|...|.++.|-|. +.+++++|..|..
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI-------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI-------STGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------ecccccceeEEeeeccCCCeEEEeccCcce
Confidence 48999999999999999999999 8999999999844433322 4679999999999994 2268999999999
Q ss_pred EEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC-CEEEEec-CCeEEEEEccCCCCCeeEEeeccC
Q 012535 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g-~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
|+++|+...+. .-..+....+...+..|...|..++-.|++ ..+-+++ ||+|+-||++.+..+-.....|..
T Consensus 119 i~lfdl~~~~~------~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 119 IKLFDLDSSKE------GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred EEEEecccccc------cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 99999986431 111222223344566778999999999988 4444555 799999999853222222222222
Q ss_pred ccccccccccCCCccceeeEEEecCC-CEEEEecCCCeEEEEecC
Q 012535 385 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~ 428 (461)
.+.....+ ....++..+|.. .+|++|+.|-..++||.+
T Consensus 193 l~ny~~~l------ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 193 LVNYNPQL------IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHHhchhh------heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 21111111 112388899875 589999999999999964
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=1.5e-11 Score=102.76 Aligned_cols=240 Identities=10% Similarity=0.092 Sum_probs=140.2
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcC-CCCCCCCcccccccccccccCCccccccccccCCCc--chhh--
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEP--EFDY-- 105 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~~~-- 105 (461)
..+|.+.|++...-|...-+.+.+.|.+++||--. .++--+.....++.....+.+.++.+.+........ +|..
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence 44788999999988877889999999999999643 333221222222333333333333322222111110 0000
Q ss_pred --------ccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcc
Q 012535 106 --------LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (461)
Q Consensus 106 --------~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (461)
-..+.++..|..+-|+- ....+++.+.|..+.---.+.+........... +..+
T Consensus 100 dfnkm~~~r~~~~h~~~v~~~if~~--~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~----------------~t~~ 161 (404)
T KOG1409|consen 100 DFNKMTFLKDYLAHQARVSAIVFSL--THEWVLSTGKDKQFAWHCTESGNRLGGYNFETP----------------ASAL 161 (404)
T ss_pred hhhhcchhhhhhhhhcceeeEEecC--CceeEEEeccccceEEEeeccCCcccceEeecc----------------CCCC
Confidence 00113345566666652 233566666665554333333221111100000 0011
Q ss_pred eeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeE
Q 012535 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRI 256 (461)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i 256 (461)
.+.- .+.+.|...|.|..-. +..... ..... +.+|.+.+.+++|.+....|.+| +|..+
T Consensus 162 ~~d~--------------~~~fvGd~~gqvt~lr-~~~~~~----~~i~~-~~~h~~~~~~l~Wd~~~~~LfSg~~d~~v 221 (404)
T KOG1409|consen 162 QFDA--------------LYAFVGDHSGQITMLK-LEQNGC----QLITT-FNGHTGEVTCLKWDPGQRLLFSGASDHSV 221 (404)
T ss_pred ceee--------------EEEEecccccceEEEE-EeecCC----ceEEE-EcCcccceEEEEEcCCCcEEEeccccCce
Confidence 1111 1236677777777655 211111 11222 38999999999999999999999 89999
Q ss_pred EEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
.+||+-...... . .+.+|...|..+..-+.- +.+.+++.||.|.+||++..+
T Consensus 222 i~wdigg~~g~~-~------el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 222 IMWDIGGRKGTA-Y------ELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred EEEeccCCccee-e------eeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 999997443322 1 477899999999988886 899999999999999998654
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=7.6e-11 Score=96.59 Aligned_cols=254 Identities=15% Similarity=0.132 Sum_probs=154.3
Q ss_pred cceEEEEEeecC-CCc-EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 113 EKINKIRWCQSA-NSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~-~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..+..+.|+-.+ ++. .++-+-.+|.|.++..........+..-.. .....+ -..++.|++.+..+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~----~ki~~~-----~~lslD~~~~~~~i---- 136 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS----KKISVV-----EALSLDISTSGTKI---- 136 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch----hhhhhe-----eeeEEEeeccCceE----
Confidence 457888887533 344 456677899999998765432222221100 000000 01156777777764
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCce
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+++..+|.+.+-+ . .+ ...+..+. .+.|..+.....|+.. .+++.+| +|+.+..||++..+...
T Consensus 137 --------~vs~s~G~~~~v~-~--t~--~~le~vq~-wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 137 --------FVSDSRGSISGVY-E--TE--MVLEKVQT-WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred --------EEEcCCCcEEEEe-c--ce--eeeeeccc-ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 8888888888543 1 11 11111112 3789999999998765 4567778 89999999999544222
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
- ....-|...|.+|.-+|..+.++++|+.|..|++||.|+-.. ++. +... .+.|..+.
T Consensus 203 ~------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k---Pl~--~~~v-----------~GGVWRi~ 260 (339)
T KOG0280|consen 203 W------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK---PLF--KAKV-----------GGGVWRIK 260 (339)
T ss_pred e------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC---ccc--cCcc-----------ccceEEEE
Confidence 1 123448889999999987778999999999999999985321 011 1111 17899999
Q ss_pred EccC--CCEEEEecCCeEEEEEccCC-CC---CeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec-CCCe
Q 012535 349 FARN--GRHILSRDYMTLKLWDINMD-SG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL 421 (461)
Q Consensus 349 ~s~~--g~~l~s~~d~~i~vwd~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~ 421 (461)
++|. ++.|+++-.+-.+|-+.... .+ .+...+.|.... ..-.|.....+|+|++ .|+.
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~---------------YG~DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLC---------------YGGDWDSKDSFLATCSFYDKK 325 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccchheeeecccccccee---------------eccccccccceeeeeeccccc
Confidence 9994 34455555566777776542 12 223334444322 1334433345788765 6777
Q ss_pred EE-EEecCCC
Q 012535 422 FR-VFGCSEG 430 (461)
Q Consensus 422 i~-iw~~~~~ 430 (461)
++ +|-.-++
T Consensus 326 ~~~~Wl~~t~ 335 (339)
T KOG0280|consen 326 IRQLWLHITG 335 (339)
T ss_pred eeeeeeeccC
Confidence 65 7755544
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=4e-11 Score=112.48 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=120.4
Q ss_pred ccccceEEEEEcCCCCEEEEeec---CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------------------------~l~~~~--------- 245 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------------------------LVGNFP--------- 245 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE------------------------EeecCC---------
Confidence 56778999999999999988763 468999999776421 222333
Q ss_pred ccccceEEEEEeecCCCcEEE-EEeCCCe--EEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 110 EIEEKINKIRWCQSANSALYL-LSTNDKT--IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~-~~~~d~~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..+...+|+ +||+.|+ +.+.++. |.+||+.++....+
T Consensus 246 ---g~~~~~~~S--PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L----------------------------------- 285 (435)
T PRK05137 246 ---GMTFAPRFS--PDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL----------------------------------- 285 (435)
T ss_pred ---CcccCcEEC--CCCCEEEEEEecCCCceEEEEECCCCceEEc-----------------------------------
Confidence 346778898 5676665 4455555 55556655543221
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-C--CeEEEEEcc
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-D--LRINLWNLE 262 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d--~~i~iwd~~ 262 (461)
..+........|+|+|+.|+.. + + ..|.++|+.
T Consensus 286 -------------------------------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 286 -------------------------------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred -------------------------------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence 1111223456788888877765 2 3 367777876
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---CeEEEEECCCcccccccccccccccCCCccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
.+. ...+ ..+...+....|+|+| +.|+....+ ..|.+||+..+.. ..+...
T Consensus 323 g~~-~~~l--------t~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~~----------- 376 (435)
T PRK05137 323 GSN-PRRI--------SFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTSG----------- 376 (435)
T ss_pred CCC-eEEe--------ecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccCC-----------
Confidence 432 2222 2223445678899999 777776543 3688888765432 222111
Q ss_pred cccceeEEEEccCCCEEEEe-cC-C-----eEEEEEcc
Q 012535 340 IIASISDIKFARNGRHILSR-DY-M-----TLKLWDIN 370 (461)
Q Consensus 340 h~~~v~~l~~s~~g~~l~s~-~d-~-----~i~vwd~~ 370 (461)
..+....|+|||++|+.. .+ + .++++|+.
T Consensus 377 --~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 377 --FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred --CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 235678999999988763 22 2 56777775
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.4e-11 Score=113.83 Aligned_cols=200 Identities=13% Similarity=0.180 Sum_probs=121.3
Q ss_pred ccccceEEEEEcCCCCEEEEeecC---CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.+...+.+.+|+|||+.|+..+.+ ..|.+|++.+++.. .+..+.
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---------------------~l~~~~------------ 247 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---------------------LVASFR------------ 247 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------------------EeccCC------------
Confidence 466789999999999999987743 46999999776421 111122
Q ss_pred ccccceEEEEEeecCCCcEEEE-EeCCC--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 110 EIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
....+.+|+ +||+.++. .+.+| .|.+||+.+++...+.... +... ..+|+|+|+.+
T Consensus 248 ---g~~~~~~~S--pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~---------~~~~-------~~~~spDG~~l 306 (433)
T PRK04922 248 ---GINGAPSFS--PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF---------GIDT-------EPTWAPDGKSI 306 (433)
T ss_pred ---CCccCceEC--CCCCEEEEEEeCCCCceEEEEECCCCCeEECccCC---------CCcc-------ceEECCCCCEE
Confidence 224577898 56766654 45555 5999999888754432211 1111 56899999975
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-C--CeEEEEEcc
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-D--LRINLWNLE 262 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d--~~i~iwd~~ 262 (461)
+++...++...+|. +. .... ...+....+ .....++|+|+|+.++.. . + ..|.+||+.
T Consensus 307 -----------~f~sd~~g~~~iy~-~d-l~~g---~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 307 -----------YFTSDRGGRPQIYR-VA-ASGG---SAERLTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred -----------EEEECCCCCceEEE-EE-CCCC---CeEEeecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 23444555555554 21 1111 111111122 234468999999998875 3 3 368999987
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---CeEEEEECCCc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQS 315 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~ 315 (461)
+++.. . +. +........|+|+| ++++..+.+ +.|.++++...
T Consensus 369 ~g~~~-~--------Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 369 TGSVR-T--------LT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCeE-E--------CC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCC
Confidence 54422 2 11 12234567899999 777766653 35777787554
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2.3e-11 Score=115.81 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=122.7
Q ss_pred EEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 239 i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
+-++++.-++++| .-+.|.+|+....+.. ..+.+|.+.|.++.++-+| .++++.+.|+++|+|++.+.+.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p--------~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP--------IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCc--------ceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccc
Confidence 3356667778888 6899999998733222 2478899999999999999 9999999999999999998764
Q ss_pred ccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCC
Q 012535 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (461)
. . ...-+|+..|..++|.|+ ++++++ |.+.++|+.. +..+..+.+|...-
T Consensus 210 ~----~-----------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~---------- 260 (967)
T KOG0974|consen 210 L----G-----------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKG---------- 260 (967)
T ss_pred c----C-----------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhcc----------
Confidence 2 1 233567799999999998 777755 7999999875 67777888887643
Q ss_pred CccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
++.++..++...+++++.||.+++|++....
T Consensus 261 ----iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 261 ----IWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ----eeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 4799999999999999999999999998654
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=4e-10 Score=105.90 Aligned_cols=149 Identities=10% Similarity=0.131 Sum_probs=91.3
Q ss_pred eeeEEeCCCCCEEEEe--C--CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CC--eEE
Q 012535 236 INSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIR 308 (461)
Q Consensus 236 v~~i~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i~ 308 (461)
+.+++|+|+++.|+.. . +..|.+||+.++. ... +..+........|+|++ +.|+..+. ++ .|.
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~--------l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTR--------LTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIY 305 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCC-EEE--------CCCCCCCCCCEEECCCC-CEEEEEECCCCCceEE
Confidence 3457789998877643 2 3468888887543 221 22233444567899998 76665554 33 577
Q ss_pred EEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CC---eEEEEEccCCCCCeeEEeeccC
Q 012535 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM---TLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~---~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
++|+.+++. ..+.... ..+....|+|+|++|+.++ ++ .|.+||+.. + ....+.....
T Consensus 306 ~~d~~~~~~-----~~l~~~~------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~ 366 (417)
T TIGR02800 306 MMDADGGEV-----RRLTFRG------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-G-GERVLTDTGL 366 (417)
T ss_pred EEECCCCCE-----EEeecCC------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-C-CeEEccCCCC
Confidence 778776542 1221111 3466789999999998764 33 788888874 3 3333332211
Q ss_pred ccccccccccCCCccceeeEEEecCCCEEEEecCCC---eEEEEecCC
Q 012535 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSE 429 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~ 429 (461)
. ...+|+||+++|+..+.++ .+++.+...
T Consensus 367 ~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 367 D----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred C----------------CCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 1 1568999999888776654 456666543
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=4.1e-11 Score=107.40 Aligned_cols=146 Identities=12% Similarity=0.154 Sum_probs=116.3
Q ss_pred CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccc
Q 012535 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (461)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 322 (461)
+...++-| ..|.|.+|++..++....+ .-..|.+.|.++.++.+- ..|.+++.|+.+..|+...... +
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~----~ 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKL------STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI----I 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEE------ecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee----e
Confidence 44566677 7999999999866555443 235699999999999887 8999999999999999988765 4
Q ss_pred cccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCcccee
Q 012535 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (461)
+.+.... ..+.+++.+|||..|++++. .|++||+++ ++.+..|++|.++++
T Consensus 138 ~~~~~~~------------~~~~sl~is~D~~~l~~as~-~ik~~~~~~-kevv~~ftgh~s~v~--------------- 188 (541)
T KOG4547|consen 138 RIWKEQK------------PLVSSLCISPDGKILLTASR-QIKVLDIET-KEVVITFTGHGSPVR--------------- 188 (541)
T ss_pred eeeccCC------------CccceEEEcCCCCEEEeccc-eEEEEEccC-ceEEEEecCCCcceE---------------
Confidence 5555443 56899999999999998874 899999996 999999999999985
Q ss_pred eEEEecC-----CCEEE-EecCCCeEEEEecCC
Q 012535 403 ECCLSGD-----GGRVA-TGSYSNLFRVFGCSE 429 (461)
Q Consensus 403 ~~~~s~~-----~~~l~-s~~~dg~i~iw~~~~ 429 (461)
+++|..+ |.++. +...+..+.+|-+..
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6777665 55554 445667788888875
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.1e-10 Score=102.29 Aligned_cols=287 Identities=11% Similarity=0.184 Sum_probs=165.5
Q ss_pred ceEEEEEcCCCCEEEEee-----c-----CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcc----
Q 012535 37 IISAIEFDKSGDHLATGD-----R-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE---- 102 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~-----~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---- 102 (461)
.++++.|||.|.+|.|=- . .-.+++|++.++.......+..+.. =...|+++-.+...+.+++-.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEec
Confidence 678899999998887621 1 2357799998844322222222210 022333333333222232221
Q ss_pred --hhhccccccccceEEEEEeecCCCcEEEE-----EeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccC
Q 012535 103 --FDYLKSLEIEEKINKIRWCQSANSALYLL-----STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (461)
Q Consensus 103 --~~~~~~~~~~~~v~~v~~~p~~~~~~l~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (461)
|..+....+...|+.+.++|.+....+++ .+.-+.|+||....+........ ........ .
T Consensus 154 ~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~----------ksFFkadk--v 221 (566)
T KOG2315|consen 154 GSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN----------KSFFKADK--V 221 (566)
T ss_pred CCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhh----------ccccccce--e
Confidence 11122223457789999998755555655 24567899998763221111100 00000000 0
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe---C
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---D 252 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~ 252 (461)
.+.|.+-|..+.++........=.+=..+..+.+++ +. + ..... .....++|.++.|+|+++.|+++ .
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~-t~---g----~s~~V-~L~k~GPVhdv~W~~s~~EF~VvyGfM 292 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA-TQ---G----ESVSV-PLLKEGPVHDVTWSPSGREFAVVYGFM 292 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEE-ec---C----ceEEE-ecCCCCCceEEEECCCCCEEEEEEecc
Confidence 457777777664432211110001112234555554 21 1 11111 12346899999999999988875 4
Q ss_pred CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---CeEEEEECCCccccccccccccccc
Q 012535 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
-..+.++|++ ....+.+ ..++=+++-|+|.| ++++.++.+ |.+.+||..+.+. +..++..
T Consensus 293 PAkvtifnlr-~~~v~df----------~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~----i~~~~a~- 355 (566)
T KOG2315|consen 293 PAKVTIFNLR-GKPVFDF----------PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL----IAKFKAA- 355 (566)
T ss_pred cceEEEEcCC-CCEeEeC----------CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhh----ccccccC-
Confidence 7889999998 4444322 35556789999999 888877764 7899999998665 4555553
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEec-------CCeEEEEEccCCCCCee
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDINMDSGPVA 377 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-------d~~i~vwd~~~~~~~~~ 377 (461)
.-+-+.|+|||++++++. |+.++||+.. |..+.
T Consensus 356 -------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt--G~~l~ 395 (566)
T KOG2315|consen 356 -------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT--GSLLH 395 (566)
T ss_pred -------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec--Cceee
Confidence 356689999999999852 5889999996 55543
No 247
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=5.2e-10 Score=101.17 Aligned_cols=260 Identities=10% Similarity=0.102 Sum_probs=146.0
Q ss_pred EEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEE
Q 012535 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (461)
Q Consensus 39 ~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (461)
..+.|+|||+++++++.||.|.++|+.+.+. +.++... ....++
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-----------------------v~~i~~G-------------~~~~~i 83 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV-----------------------VATIKVG-------------GNPRGI 83 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------------EEEEE-S-------------SEEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------------EEEEecC-------------CCcceE
Confidence 4578999999999999999999999988763 2333322 236789
Q ss_pred EEeecCCCcEEEEEe-CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCc
Q 012535 119 RWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (461)
Q Consensus 119 ~~~p~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (461)
+++ +||++++++. .++.+.++|.++.+..........+... ..+.+. .+..+|.....
T Consensus 84 ~~s--~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~-------aIv~s~~~~~f----------- 142 (369)
T PF02239_consen 84 AVS--PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG-PESRVA-------AIVASPGRPEF----------- 142 (369)
T ss_dssp EE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT-S---EE-------EEEE-SSSSEE-----------
T ss_pred EEc--CCCCEEEEEecCCCceeEeccccccceeecccccccccc-cCCCce-------eEEecCCCCEE-----------
Confidence 998 6788988875 7899999999998877765543221100 111121 33344444421
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeec---
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD--- 272 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~--- 272 (461)
++..-+.+.|.+.| ...... ..... ...........|+|++++++.+ .++.|-++|.++.+....+-.
T Consensus 143 Vv~lkd~~~I~vVd-y~d~~~-----~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 143 VVNLKDTGEIWVVD-YSDPKN-----LKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp EEEETTTTEEEEEE-TTTSSC-----EEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred EEEEccCCeEEEEE-eccccc-----cceee-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc
Confidence 23344456666655 222211 11111 1223456678999999988776 577888888875432211100
Q ss_pred --------------------------------cCCC------------CCCCCCcceEEEEEeCCCCCeEEEE----ecC
Q 012535 273 --------------------------------VKPA------------NMEDLTEVITSAEFHPTHCNMLAYS----SSK 304 (461)
Q Consensus 273 --------------------------------~~~~------------~~~~~~~~v~~v~~~p~~~~~l~~~----~~d 304 (461)
..+. ++...... .-+..+|++ +++.+. ...
T Consensus 216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDA 293 (369)
T ss_dssp BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSH
T ss_pred ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCC
Confidence 0000 01111112 456678998 777776 445
Q ss_pred CeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C--CeEEEEEccCCCCCeeEEe
Q 012535 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--MTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d--~~i~vwd~~~~~~~~~~~~ 380 (461)
+.|.++|.++.+. +.++..... ..+..+.|+++|+++..+. + +.|.+||..+ .+.+..+.
T Consensus 294 ~~v~viD~~tl~~----~~~i~~~~~-----------~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T-l~~~~~i~ 356 (369)
T PF02239_consen 294 DTVQVIDKKTLKV----VKTITPGPG-----------KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT-LKEKKRIP 356 (369)
T ss_dssp T-EEEEECCGTEE----EE-HHHHHT-------------EEEEEE-TTSSEEEEEEE--TTEEEEEETTT-TEEEEEEE
T ss_pred ceEEEEECcCcce----eEEEeccCC-----------CcEeccEECCCCCEEEEEEecCCCEEEEEECCC-cEEEEEEE
Confidence 8999999988754 344432210 2488999999999887653 3 4999999997 77777776
No 248
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=6.6e-11 Score=110.45 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=104.6
Q ss_pred cccccceeeEEeCCCCCEEEEe-C---CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEE-EEecC
Q 012535 230 HAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 304 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~d 304 (461)
..+...+.+.+|+|+|+.|+.. . ...|.+||+.+++.. . +....+.+...+|+|+| +.|+ +.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~--------l~~~~g~~~~~~~SPDG-~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-V--------VANFKGSNSAPAWSPDG-RTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-E--------eecCCCCccceEECCCC-CEEEEEEccC
Confidence 3456778899999999998875 2 346999999865432 2 12223445689999999 6555 56778
Q ss_pred CeEEEEEC--CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC--CeEEEEEccCCCCCeeEEe
Q 012535 305 GSIRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 305 g~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d--~~i~vwd~~~~~~~~~~~~ 380 (461)
|...||.+ ..+. ...+..+. .......|+|||++|+..++ +...||.+...+.....+.
T Consensus 262 g~~~Iy~~d~~~~~-----~~~lt~~~------------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 262 GNSQIYTVNADGSG-----LRRLTQSS------------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCceEEEEECCCCC-----cEECCCCC------------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 87666654 3333 12222221 34566789999999886543 6667776653233333333
Q ss_pred eccCccccccccccCCCccceeeEEEecCCCEEEEecCCC---eEEEEecCCCCcc
Q 012535 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAE 433 (461)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~~~ 433 (461)
.+.... ...+|+|||++|+..+.++ .|++||+.+++..
T Consensus 325 ~~g~~~---------------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 325 FTGSYN---------------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred cCCCCc---------------CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 222111 2678999999998776554 6999999987644
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=1.1e-09 Score=96.71 Aligned_cols=296 Identities=15% Similarity=0.158 Sum_probs=167.3
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
..-++..++|||.|.+|++.... .|.+|.-..... +..+.. .
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~-----------------------l~~~~~--------------~ 72 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAK-----------------------LVRFRH--------------P 72 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhh-----------------------eeeeec--------------C
Confidence 45678999999999999988766 488998654431 112222 2
Q ss_pred ceEEEEEeecCCCcEEEEEeCCC---------------eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcce
Q 012535 114 KINKIRWCQSANSALYLLSTNDK---------------TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~---------------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (461)
.|..+.|+ +++.+|.+-+... .+.+||+.++.+...+.....+. .+.. -+.
T Consensus 73 ~V~~~~fS--P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~----~~Wp--------~~k 138 (561)
T COG5354 73 DVKYLDFS--PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY----LGWP--------VLK 138 (561)
T ss_pred CceecccC--cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc----cccc--------eee
Confidence 27778887 4566777765433 48999999998777665543220 0000 235
Q ss_pred eecCCCccccccc----------------------CCCCCccccccCCCcE-EeeeeecccCccccceeeEeeecccccc
Q 012535 179 YMANGGCGERNFG----------------------CASNDSSFPPGGVSSL-RLPVVVTSQETNLVAGCRRIYAHAHDYH 235 (461)
Q Consensus 179 ~~~~g~~~~~~~~----------------------~~~~~~~~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (461)
|+.+.++...+.. ..-.++.++...++.. ..|- .+........+.+.-+....
T Consensus 139 ~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~t----PEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 139 FSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWT----PEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred eeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEc----cccCCCCcEEEEEEccCCCe
Confidence 5555554322110 0011333333323322 2222 11111111111110010000
Q ss_pred --------e--eeEEeCCCCCEEEEe------------CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC
Q 012535 236 --------I--NSISNNSDGETFISA------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (461)
Q Consensus 236 --------v--~~i~~~~~~~~l~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 293 (461)
+ ..+.|.+.|++|+.- .+..+.++++... .+. ......++|...+|.|.
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~-------V~~~~~~pVhdf~W~p~ 285 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIP-------VEKDLKDPVHDFTWEPL 285 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc--ccc-------eeccccccceeeeeccc
Confidence 0 134455555554421 1234455555411 111 01145789999999999
Q ss_pred CCCeEEEE--ecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C---CeEEEE
Q 012535 294 HCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLW 367 (461)
Q Consensus 294 ~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d---~~i~vw 367 (461)
+ +.+++. -.+-.+.++|++..- .+.+.. ..-+.+.|+|.+++++.++ + |.+-+|
T Consensus 286 S-~~F~vi~g~~pa~~s~~~lr~Nl-----~~~~Pe--------------~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 286 S-SRFAVISGYMPASVSVFDLRGNL-----RFYFPE--------------QKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred C-CceeEEecccccceeecccccce-----EEecCC--------------cccccccccCcccEEEEecCCccccceEEe
Confidence 8 555443 468889999998762 233322 3456788999999999854 3 899999
Q ss_pred EccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec------CCCeEEEEecCCCC
Q 012535 368 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS------YSNLFRVFGCSEGS 431 (461)
Q Consensus 368 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~iw~~~~~~ 431 (461)
|.......+..+.+... .-+.|+||+.++.+.. .|+.|.|||+....
T Consensus 346 ~~~~rf~~~~~~~~~n~-----------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 346 DPAGRFKVAGAFNGLNT-----------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccCCceEEEEEeecCCc-----------------eEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 98742233334544332 2578999999887664 48899999998653
No 250
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.1e-10 Score=105.12 Aligned_cols=278 Identities=12% Similarity=0.140 Sum_probs=170.3
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
+.......|++|+....|+|+|+.||.+++-.+.+....+..+ +++...+....+++.||.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~--------glaa~snLsmNQtLeGH~----------- 71 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS--------GLAAASNLSMNQTLEGHN----------- 71 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc--------ccccccccchhhhhccCc-----------
Confidence 3456788999999999999999999999999887654321111 122233455667889999
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
+.|..+.|+ .+.+.|-++..+|.|.+|-+-.+.......-... .+.|. +++|..+|..+.+.+.
T Consensus 72 -~sV~vvTWN--e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRn------KSvV~-------SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 72 -ASVMVVTWN--ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRN------KSVVV-------SMSWNLDGTKICIVYE 135 (1189)
T ss_pred -ceEEEEEec--cccccccccCCCceEEEEeeecccHHHHHhhCcC------ccEEE-------EEEEcCCCcEEEEEEc
Confidence 889999998 5677888899999999998865532111000000 11122 4455555554432210
Q ss_pred -----------------------------CCCCCccccccCCCcEEeeeeecccCccccceeeEeee---cccccceeeE
Q 012535 192 -----------------------------CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA---HAHDYHINSI 239 (461)
Q Consensus 192 -----------------------------~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i 239 (461)
+.+...++.+-.+|...+||.-.+........|.-... ......+..+
T Consensus 136 DGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 136 DGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred cCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence 11122345566667777777211111122222211110 1112235555
Q ss_pred EeC--------CCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC-----
Q 012535 240 SNN--------SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----- 305 (461)
Q Consensus 240 ~~~--------~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----- 305 (461)
.|. |+...|+.+ .+|.+.+-.-.+...+..+ .-.-.+..+.|+++| ..||.++.+.
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~---------dtgm~~vgakWnh~G-~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV---------DTGMKIVGAKWNHNG-AVLAVCGNDSDADEP 285 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE---------ecccEeecceecCCC-cEEEEccCcccccCc
Confidence 553 577889999 8999988766544444321 124668899999999 8999988753
Q ss_pred ----eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccC
Q 012535 306 ----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 306 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
.|.+|..-.. . +.+++.+. ..|++++|-..|-.++.+-|+.|.+=+++.
T Consensus 286 ~d~n~v~Fysp~G~-i----~gtlkvpg------------~~It~lsWEg~gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 286 TDSNKVHFYSPYGH-I----VGTLKVPG------------SCITGLSWEGTGLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred cccceEEEeccchh-h----eEEEecCC------------ceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence 4555543221 1 45555544 579999998888888877777777766653
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=6.3e-10 Score=99.94 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=105.7
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeee-cccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCC
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (461)
++.|...|.|.+|+ +.. .+....+. ..|.+.|.++.++.+-..|.++ .|+.+..|+.... ..+.+
T Consensus 73 lvlgt~~g~v~~ys-~~~------g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~----- 139 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYS-VAG------GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRI----- 139 (541)
T ss_pred EEeecCCccEEEEE-ecC------CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeee-----
Confidence 47777888888877 322 12222222 6788999999999998888888 8999999998843 34332
Q ss_pred CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC---
Q 012535 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--- 352 (461)
Q Consensus 276 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--- 352 (461)
+.+....+.+++.+||+ ..+++++ +.|++||+.+++. +.+|.+|. ++|+++.|.-+
T Consensus 140 --~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kev----v~~ftgh~------------s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 140 --WKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEV----VITFTGHG------------SPVRTLSFTTLIDG 198 (541)
T ss_pred --eccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceE----EEEecCCC------------cceEEEEEEEeccc
Confidence 45567778999999998 8888765 7899999999987 56666665 88999999886
Q ss_pred --CCEEEEec--CCeEEEEEccC
Q 012535 353 --GRHILSRD--YMTLKLWDINM 371 (461)
Q Consensus 353 --g~~l~s~~--d~~i~vwd~~~ 371 (461)
|.+++++. +.-+.+|-+..
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccceeeeccccccceeEEEEEc
Confidence 88888854 36677787753
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=3.4e-10 Score=101.16 Aligned_cols=265 Identities=12% Similarity=0.179 Sum_probs=156.3
Q ss_pred hhccccccccceEEEEEeecCCCcEEEEE-eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecC
Q 012535 104 DYLKSLEIEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (461)
Q Consensus 104 ~~~~~~~~~~~v~~v~~~p~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (461)
+.+..++....-+.|..+ +||.|+++. ..--.|++||+.+-.++........ + +.|-+
T Consensus 43 eLiQdfe~p~ast~ik~s--~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae---------~---------V~fei- 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVS--PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAE---------V---------VDFEI- 101 (703)
T ss_pred HHHHhcCCccccceeEec--CCCcEEEEecccCCceEEEEcccceeeeeeccccc---------c---------eeEEE-
Confidence 344555666778889998 678886664 5788999999987654433322211 0 11111
Q ss_pred CCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEeCCCeEEEEEc
Q 012535 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISADDLRINLWNL 261 (461)
Q Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~d~~i~iwd~ 261 (461)
...+...++.-..|..|.+-. ..+.... .+ -...-.+++++. ...+++.|....|+-+++
T Consensus 102 --------LsDD~SK~v~L~~DR~IefHa----k~G~hy~--~R-----IP~~GRDm~y~~~scDly~~gsg~evYRlNL 162 (703)
T KOG2321|consen 102 --------LSDDYSKSVFLQNDRTIEFHA----KYGRHYR--TR-----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL 162 (703)
T ss_pred --------eccchhhheEeecCceeeehh----hcCeeee--ee-----cCcCCccccccCCCccEEEeecCcceEEEEc
Confidence 000000112223333333211 0000000 00 001123455543 345566666777888888
Q ss_pred cCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
+.+.-+. .+....+.+++|..++-. .+|++|+.+|.|.+||.+....+ .++.....- .........
T Consensus 163 EqGrfL~--------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv----~~l~~~~~v-~s~pg~~~~ 228 (703)
T KOG2321|consen 163 EQGRFLN--------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRV----GTLDAASSV-NSHPGGDAA 228 (703)
T ss_pred ccccccc--------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhh----eeeeccccc-CCCcccccc
Confidence 8665442 244456889999999987 89999999999999999987653 333222110 000011112
Q ss_pred cceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC--CCEEEEecC
Q 012535 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--GGRVATGSY 418 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~ 418 (461)
..|+++.|+.+|-.+++|. .|.+.|||++. .+++. ...|..... |..+.|.+. ...+++. +
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~-~kdh~~e~p-------------i~~l~~~~~~~q~~v~S~-D 292 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLL-VKDHGYELP-------------IKKLDWQDTDQQNKVVSM-D 292 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEccc-CCcee-ecccCCccc-------------eeeecccccCCCceEEec-c
Confidence 3599999999999999987 59999999996 55553 444555432 347888665 4455554 4
Q ss_pred CCeEEEEecCCCCccceeecc
Q 012535 419 SNLFRVFGCSEGSAESTTLEA 439 (461)
Q Consensus 419 dg~i~iw~~~~~~~~~~~~~~ 439 (461)
...++|||-.+|+.. ..++.
T Consensus 293 k~~~kiWd~~~Gk~~-asiEp 312 (703)
T KOG2321|consen 293 KRILKIWDECTGKPM-ASIEP 312 (703)
T ss_pred hHHhhhcccccCCce-eeccc
Confidence 578999999999765 34433
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1e-09 Score=102.85 Aligned_cols=204 Identities=14% Similarity=0.121 Sum_probs=116.8
Q ss_pred cceEEEEEeecCCCcEEEEEeC-CC--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTN-DK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+...+|+ +||+.|+..+. ++ .|.+||+.+++...+..... ... ...|+|+|+.+
T Consensus 218 ~~~~~p~wS--PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---------~~~-------~~~wSPDG~~L--- 276 (448)
T PRK04792 218 EPLMSPAWS--PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---------ING-------APRFSPDGKKL--- 276 (448)
T ss_pred CcccCceEC--CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---------CcC-------CeeECCCCCEE---
Confidence 458889999 56778877643 33 58888988876544332211 111 56899999975
Q ss_pred ccCCCCCccccccCCCc--EEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCC--eEEEEEccC
Q 012535 190 FGCASNDSSFPPGGVSS--LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEI 263 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~ 263 (461)
+++...++. |.++| +. ... ..+ +..+.......+|+|+++.|+.. .++ .|.++|+.+
T Consensus 277 --------a~~~~~~g~~~Iy~~d-l~---tg~---~~~--lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 277 --------ALVLSKDGQPEIYVVD-IA---TKA---LTR--ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred --------EEEEeCCCCeEEEEEE-CC---CCC---eEE--CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 234555665 44445 22 111 111 12333456678999999988765 344 455556654
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CC--eEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
++ ...+ +.. .......+|+|+| +.|+..+. ++ .|.++|+.++.. ..+....
T Consensus 340 g~-~~~L------t~~--g~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~~~----------- 393 (448)
T PRK04792 340 GK-VSRL------TFE--GEQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTSTR----------- 393 (448)
T ss_pred CC-EEEE------ecC--CCCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccCCC-----------
Confidence 33 2221 112 2223457899999 67766554 44 455678777653 1111110
Q ss_pred ccceeEEEEccCCCEEEEec--CC--eEEEEEccCCCCCeeEEeeccC
Q 012535 341 IASISDIKFARNGRHILSRD--YM--TLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~--d~--~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
......|+|||++|+... ++ .+++++.. +.....+..+.+
T Consensus 394 --~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g 437 (448)
T PRK04792 394 --LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG 437 (448)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence 112347999999888643 23 46677763 666666655443
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=6.4e-10 Score=104.49 Aligned_cols=203 Identities=14% Similarity=0.165 Sum_probs=122.7
Q ss_pred ccccceEEEEEcCCCCEEEEeecC---CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.+...+.+.+|+|||++||.+..+ ..|++||+.+++.. .+..+.
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------------------------~~~~~~--------- 233 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------------------------KVASFP--------- 233 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE------------------------EeecCC---------
Confidence 455678899999999999987654 47999998876421 112222
Q ss_pred ccccceEEEEEeecCCCcEEEE-EeCCC--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 110 EIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..+.+++|+ +|+..|+. .+.++ .|.+|++.++....+.
T Consensus 234 ---~~~~~~~~s--pDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~---------------------------------- 274 (417)
T TIGR02800 234 ---GMNGAPAFS--PDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT---------------------------------- 274 (417)
T ss_pred ---CCccceEEC--CCCCEEEEEECCCCCccEEEEECCCCCEEECC----------------------------------
Confidence 335668898 55666654 44444 4777776655432210
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-CC--eEEEEEcc
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DL--RINLWNLE 262 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~--~i~iwd~~ 262 (461)
.+........|+|+++.|+.. . ++ .|.++|+.
T Consensus 275 --------------------------------------------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 275 --------------------------------------------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred --------------------------------------------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 111122345688888877654 2 33 57777776
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC---eEEEEECCCcccccccccccccccCCCccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
+.+ ... +..+......+.|+|++ ++++.++.++ .|.+||+.++.. ..+...
T Consensus 311 ~~~-~~~--------l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~----------- 364 (417)
T TIGR02800 311 GGE-VRR--------LTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTDT----------- 364 (417)
T ss_pred CCC-EEE--------eecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccCC-----------
Confidence 433 221 22234556788999999 8888877776 788999887542 222211
Q ss_pred cccceeEEEEccCCCEEEEec-C---CeEEEEEccCCCCCeeEEee
Q 012535 340 IIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQV 381 (461)
Q Consensus 340 h~~~v~~l~~s~~g~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~ 381 (461)
.......|+|||++|+... + ..+++.+.. +.....+..
T Consensus 365 --~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~--g~~~~~~~~ 406 (417)
T TIGR02800 365 --GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD--GRFRARLPL 406 (417)
T ss_pred --CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC--CceeeECCC
Confidence 1234458999999888754 2 345565543 444444443
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=4e-09 Score=98.03 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=113.0
Q ss_pred ceEEEEEeecCCCcE--E-EEEeCCC--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 114 KINKIRWCQSANSAL--Y-LLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~--l-~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
.+..-+|+| ||+. + +++..+| .|.+.++.+++...+..... ... ..+|+|||+.+
T Consensus 186 ~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---------~~~-------~p~wSPDG~~L-- 245 (428)
T PRK01029 186 LSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---------NQL-------MPTFSPRKKLL-- 245 (428)
T ss_pred CcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------Ccc-------ceEECCCCCEE--
Confidence 356679995 5543 3 2444444 57777888776555543321 111 45899999986
Q ss_pred cccCCCCCccccccCCC----cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEc-
Q 012535 189 NFGCASNDSSFPPGGVS----SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNL- 261 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~- 261 (461)
+++...+| .+..|+ +... ......+.. ..+.......+|+|||+.|+.. .+|...+|.+
T Consensus 246 ---------af~s~~~g~~di~~~~~~-~~~g---~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 246 ---------AFISDRYGNPDLFIQSFS-LETG---AIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ---------EEEECCCCCcceeEEEee-cccC---CCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 23332233 223344 2211 111112221 2222344578999999987765 3665555544
Q ss_pred -cCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---CeEEEEECCCcccccccccccccccCCCccccc
Q 012535 262 -EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (461)
Q Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (461)
........ .+..+...+....|+|+| +.|+..+.+ ..|.+||+.+++. ..+....
T Consensus 312 ~~~~g~~~~-------~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~~-------- 370 (428)
T PRK01029 312 IDPEGQSPR-------LLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRD-----YQLTTSP-------- 370 (428)
T ss_pred CcccccceE-------EeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCe-----EEccCCC--------
Confidence 32111111 122334566788999999 777765543 4699999988763 2222111
Q ss_pred cccccceeEEEEccCCCEEEE-ec---CCeEEEEEccC
Q 012535 338 TEIIASISDIKFARNGRHILS-RD---YMTLKLWDINM 371 (461)
Q Consensus 338 ~~h~~~v~~l~~s~~g~~l~s-~~---d~~i~vwd~~~ 371 (461)
..+....|+|||++|+. +. ...|+++|+..
T Consensus 371 ----~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 371 ----ENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred ----CCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 24567899999998875 33 26788888874
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.8e-09 Score=101.62 Aligned_cols=202 Identities=12% Similarity=0.130 Sum_probs=118.2
Q ss_pred cceEEEEEeecCCCcEEEEEeCC---CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+...+|+ +||+.|+..+.+ ..|.+|++.+++...+.... +... ...|+|+|+.+
T Consensus 199 ~~~~~p~wS--pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~---------g~~~-------~~~~SpDG~~l--- 257 (430)
T PRK00178 199 EPILSPRWS--PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE---------GLNG-------APAWSPDGSKL--- 257 (430)
T ss_pred CceeeeeEC--CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC---------CCcC-------CeEECCCCCEE---
Confidence 558899999 567788776533 36889999888765543221 1111 46899999975
Q ss_pred ccCCCCCccccccCCC--cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCC--eEEEEEccC
Q 012535 190 FGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEI 263 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~ 263 (461)
+++...++ .|.++| +.... .. . +..+........|+|+++.++.. .++ .|.++++.+
T Consensus 258 --------a~~~~~~g~~~Iy~~d-~~~~~------~~-~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 258 --------AFVLSKDGNPEIYVMD-LASRQ------LS-R-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred --------EEEEccCCCceEEEEE-CCCCC------eE-E-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 23444444 566666 32211 11 1 12334455677899999987754 333 566677764
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC-C--eEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
++ ...+ ... ........|+|++ +.|+....+ + .|.+||+.++.. ..+...
T Consensus 321 g~-~~~l------t~~--~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~~------------ 373 (430)
T PRK00178 321 GR-AERV------TFV--GNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTDT------------ 373 (430)
T ss_pred CC-EEEe------ecC--CCCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccCC------------
Confidence 43 2221 111 1223457899999 777766543 3 588899887653 222111
Q ss_pred ccceeEEEEccCCCEEEEec-C---CeEEEEEccCCCCCeeEEeec
Q 012535 341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~~ 382 (461)
.......|+|||++++..+ + ..|.++++. +.....+..+
T Consensus 374 -~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~ 416 (430)
T PRK00178 374 -SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA 416 (430)
T ss_pred -CCCCCceECCCCCEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence 1112458999999988653 2 346666664 4544455443
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=9.3e-11 Score=117.61 Aligned_cols=251 Identities=15% Similarity=0.198 Sum_probs=156.6
Q ss_pred ccCCceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccc
Q 012535 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (461)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
+..++.|--+-.-++........+-..|.+|.=+|...+.+||+.||.|++|....++.+
T Consensus 2184 ~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-------------------- 2243 (2439)
T KOG1064|consen 2184 TPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-------------------- 2243 (2439)
T ss_pred CcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE--------------------
Confidence 344566665522222222233445678999999999999999999999999999876632
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
..+..-.+ ..|+.++|+ .+|+.+..+..||.+.+|.+... .....+.+.. ...
T Consensus 2244 ---~~~rt~g~-----------s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~pk---~~~s~qchnk------~~~-- 2296 (2439)
T KOG1064|consen 2244 ---VCFRTAGN-----------SRVTRSRFN--HQGNKFGIVDGDGDLSLWQASPK---PYTSWQCHNK------ALS-- 2296 (2439)
T ss_pred ---EEeeccCc-----------chhhhhhhc--ccCCceeeeccCCceeecccCCc---ceeccccCCc------ccc--
Confidence 12221111 569999999 66889999999999999998722 2222211110 000
Q ss_pred ccccCcceeecCCCcccccccCCCCCcccc---ccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFP---PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (461)
...|-..+ +++ ...++.+.+||.+.. ....+. ...|.+.++++++.|..++
T Consensus 2297 -----Df~Fi~s~--------------~~tag~s~d~~n~~lwDtl~~----~~~s~v---~~~H~~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2297 -----DFRFIGSL--------------LATAGRSSDNRNVCLWDTLLP----PMNSLV---HTCHDGGATVLAYAPKHQL 2350 (2439)
T ss_pred -----ceeeeehh--------------hhccccCCCCCcccchhcccC----ccccee---eeecCCCceEEEEcCcceE
Confidence 12222211 133 346789999992211 111122 2689999999999999999
Q ss_pred EEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
|++| .+|.|++||++..+.. |.-.. ++ .. .+|++|+..|.|+||++..-.+ ++++.
T Consensus 2351 lisggr~G~v~l~D~rqrql~-------------h~~~~----~~-~~-~~f~~~ss~g~ikIw~~s~~~l----l~~~p 2407 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLR-------------HTFQA----LD-TR-EYFVTGSSEGNIKIWRLSEFGL----LHTFP 2407 (2439)
T ss_pred EEecCCcCcEEEeehHHHHHH-------------HHhhh----hh-hh-heeeccCcccceEEEEccccch----hhcCc
Confidence 9999 7999999999954332 21111 33 33 7899999999999999988765 45554
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEEecCC
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 362 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~ 362 (461)
... .+..|..+.+ +.+...+.++.+.+|.|+
T Consensus 2408 ~e~---ak~gfFr~~g--~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2408 SEH---AKQGFFRNIG--MQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred hhh---cccchhhhcC--ceeeeccCceEEEecCCC
Confidence 432 1111122222 444455555555555554
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.2e-08 Score=85.17 Aligned_cols=214 Identities=15% Similarity=0.145 Sum_probs=137.7
Q ss_pred cceeecCCCcccccccCCCCCcccccc---CCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPG---GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 251 (461)
-++|+|+.+.+ +++. .+|.|..|. +...+......-... ..+ .+...+++++++++++++
T Consensus 44 yl~~~~~~~~L------------Y~v~~~~~~ggvaay~-iD~~~G~Lt~ln~~~-~~g--~~p~yvsvd~~g~~vf~An 107 (346)
T COG2706 44 YLAVNPDQRHL------------YVVNEPGEEGGVAAYR-IDPDDGRLTFLNRQT-LPG--SPPCYVSVDEDGRFVFVAN 107 (346)
T ss_pred eEEECCCCCEE------------EEEEecCCcCcEEEEE-EcCCCCeEEEeeccc-cCC--CCCeEEEECCCCCEEEEEE
Confidence 67899999875 4433 357777777 433222222111111 122 333789999999999998
Q ss_pred -CCCeEEEEEccCCCCceeeeccCCCCCCCCCc----------ceEEEEEeCCCCCeEEEEec-CCeEEEEECCCccccc
Q 012535 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTE----------VITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCD 319 (461)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~ 319 (461)
..|.|.++-++.......... ...|.+ .+....+.|++ ++|++... -..|.+|++..+.+..
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~-----~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQ-----VVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred ccCceEEEEEcccCCcccccee-----eeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCcccc
Confidence 589999999976544433221 111222 27899999999 77777654 3569999999877643
Q ss_pred ccccccccccCCCccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCC
Q 012535 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS 397 (461)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (461)
.....++.. ..-+.|.|+|++++...-. +++|.+|........+..++.+......... ..
T Consensus 182 ~~~~~v~~G-------------~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g---~~- 244 (346)
T COG2706 182 ADPAEVKPG-------------AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG---TN- 244 (346)
T ss_pred ccccccCCC-------------CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC---CC-
Confidence 322333221 4578899999999998865 4999999998644556666555433221110 11
Q ss_pred ccceeeEEEecCCCEEEEec-CCCeEEEEecCCC
Q 012535 398 IFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEG 430 (461)
Q Consensus 398 ~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~ 430 (461)
..-.+..++||++|.++. ....|.+|.+...
T Consensus 245 --~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 245 --WAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred --ceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 112788999999998775 2348889988764
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=9.9e-08 Score=84.49 Aligned_cols=258 Identities=11% Similarity=0.076 Sum_probs=136.5
Q ss_pred EeecCCCcEEEEE-e---------CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 120 WCQSANSALYLLS-T---------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 120 ~~p~~~~~~l~~~-~---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
++ +|++.++++ + .+..|.+||..+.+....+.....+..... ..+..++++|+|+.+
T Consensus 53 ~s--pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~--------~~~~~~~ls~dgk~l--- 119 (352)
T TIGR02658 53 VA--SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG--------TYPWMTSLTPDNKTL--- 119 (352)
T ss_pred EC--CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc--------CccceEEECCCCCEE---
Confidence 67 566677766 4 589999999999988877765433211110 111156899999986
Q ss_pred ccCCCCCccccccC-CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~ 268 (461)
++.--. +..|.+.| +...+. ......+-.. .-...+ ....++-+.||......+.......
T Consensus 120 --------~V~n~~p~~~V~VvD-~~~~kv------v~ei~vp~~~--~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 120 --------LFYQFSPSPAVGVVD-LEGKAF------VRMMDVPDCY--HIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred --------EEecCCCCCEEEEEE-CCCCcE------EEEEeCCCCc--EEEEec-CCccEEEeecCceEEEEecCCCceE
Confidence 223323 78899888 332221 1111000000 001111 1112222233333332222211111
Q ss_pred eeeccCCCCCCCCCcceE-EEEEeC-CCCCeEEEEecCCeEEEEECCCccccccc-ccccccccCCCcccccccccccee
Q 012535 269 NIVDVKPANMEDLTEVIT-SAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~-~v~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
.... .-+......+. .-.|.+ ++ +++..... |+|.+.|+......... ...+..... .. .-..+.+.
T Consensus 182 -~~~~--~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---~~--~wrP~g~q 251 (352)
T TIGR02658 182 -IKPT--EVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---AD--GWRPGGWQ 251 (352)
T ss_pred -Eeee--eeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeecccccc---cc--ccCCCcce
Confidence 0000 00000000000 004566 66 66666555 99999997654321110 111110000 00 00114455
Q ss_pred EEEEccCCCEEEEec---------C--CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-EE
Q 012535 346 DIKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RV 413 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~---------d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 413 (461)
-++++|+++.++... + +.|.++|..+ .+.+..+...... +.++++||++ +|
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~l 314 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLL 314 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEE
Confidence 599999999888732 1 5899999986 7777777643322 4899999999 77
Q ss_pred EEec-CCCeEEEEecCCCCccce
Q 012535 414 ATGS-YSNLFRVFGCSEGSAEST 435 (461)
Q Consensus 414 ~s~~-~dg~i~iw~~~~~~~~~~ 435 (461)
++.. .++.|.+.|..+++....
T Consensus 315 yvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEeCCCCCcEEEEECcCCeEEee
Confidence 7665 678899999999876643
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.3e-08 Score=95.44 Aligned_cols=190 Identities=11% Similarity=0.129 Sum_probs=107.9
Q ss_pred cceeecCCCcccccccCCCCCccccccCCC--cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-- 251 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-- 251 (461)
...|+|+|+.+ +++...++ .|.++| +...+. ... ..........+|+|+|+.|+..
T Consensus 222 ~p~wSPDG~~L-----------a~~s~~~g~~~L~~~d-l~tg~~----~~l----t~~~g~~~~~~wSPDG~~La~~~~ 281 (448)
T PRK04792 222 SPAWSPDGRKL-----------AYVSFENRKAEIFVQD-IYTQVR----EKV----TSFPGINGAPRFSPDGKKLALVLS 281 (448)
T ss_pred CceECCCCCEE-----------EEEEecCCCcEEEEEE-CCCCCe----EEe----cCCCCCcCCeeECCCCCEEEEEEe
Confidence 56999999986 22333333 466666 322111 111 1112233468899999988754
Q ss_pred CCCe--EEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CC--eEEEEECCCcccccccccccc
Q 012535 252 DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 252 ~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 326 (461)
.++. |.++|+.+++ .. .+..+.......+|+|++ +.|+..+. ++ .|.++|+.+++.. ..++.
T Consensus 282 ~~g~~~Iy~~dl~tg~-~~--------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~~~---~Lt~~ 348 (448)
T PRK04792 282 KDGQPEIYVVDIATKA-LT--------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGKVS---RLTFE 348 (448)
T ss_pred CCCCeEEEEEECCCCC-eE--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCEE---EEecC
Confidence 4554 7777876443 22 233344456778999999 66655543 44 4666677666531 01112
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEEec-C-C--eEEEEEccCCCCCeeEEeeccCccccccccccCCCcccee
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (461)
. ......+|+|||++|+..+ + + .|.++|+.. ++ ...+.... .. .
T Consensus 349 g--------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~d---------------~ 396 (448)
T PRK04792 349 G--------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR-LD---------------E 396 (448)
T ss_pred C--------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC-CC---------------C
Confidence 1 1234568999999988743 2 4 455667664 33 33333221 11 1
Q ss_pred eEEEecCCCEEEEecC-CC--eEEEEecCCC
Q 012535 403 ECCLSGDGGRVATGSY-SN--LFRVFGCSEG 430 (461)
Q Consensus 403 ~~~~s~~~~~l~s~~~-dg--~i~iw~~~~~ 430 (461)
...|+|||+.|+..+. +| .+++++.+.+
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 4679999998876554 33 3777787533
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=6.5e-09 Score=91.90 Aligned_cols=282 Identities=12% Similarity=0.125 Sum_probs=168.5
Q ss_pred cccccceEEEEEcCCCCEEEEeecCC---------------cEEEEEcCCCCCCCCccc-ccccccc-cccCCccccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGG---------------RVVLFERTDTRDNGGQRR-DLEMMDY-SMSRHPEFRYKT 94 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg---------------~i~iw~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~ 94 (461)
+.| ..|.-+.|||.++||.+=+..+ .+.+||..++..+..... ..+...- -+.|+-+-++..
T Consensus 69 ~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 69 FRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred eec-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence 345 4589999999999999976443 489999988765432211 0110000 111222222222
Q ss_pred cccCCCcch-------h--hccccccccceEEEEEeecCCCcEEEEE-----eCCCeEEEEEccCCceeEEeeeecCCCc
Q 012535 95 EFQSHEPEF-------D--YLKSLEIEEKINKIRWCQSANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEK 160 (461)
Q Consensus 95 ~~~~h~~~~-------~--~~~~~~~~~~v~~v~~~p~~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 160 (461)
.+-+|.-.+ + ..+.+. ...|....|+|..++..|+.- ..++.+++|.+..+..+.....-...
T Consensus 148 Rvv~~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~-- 224 (561)
T COG5354 148 RVVGSSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS-- 224 (561)
T ss_pred hhccCeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec--
Confidence 222221100 0 011111 256888899987666666653 57889999999866554443332110
Q ss_pred cCCCCCccccccccCcceeecCCCcccccccCCC-CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeE
Q 012535 161 AAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS-NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI 239 (461)
Q Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 239 (461)
+ ..+.|.+.|.++.++..-.. ... +--....+.+++ +..... +.. ..-.++|...
T Consensus 225 --------~-----~qLkW~~~g~~ll~l~~t~~ksnK--syfgesnLyl~~-~~e~~i-------~V~-~~~~~pVhdf 280 (561)
T COG5354 225 --------G-----VQLKWQVLGKYLLVLVMTHTKSNK--SYFGESNLYLLR-ITERSI-------PVE-KDLKDPVHDF 280 (561)
T ss_pred --------c-----cEEEEecCCceEEEEEEEeeeccc--ceeccceEEEEe-eccccc-------cee-ccccccceee
Confidence 0 06789999998766533221 100 011234566666 332111 111 2446899999
Q ss_pred EeCCCCCEEEE--e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---CeEEEEECC
Q 012535 240 SNNSDGETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMR 313 (461)
Q Consensus 240 ~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~ 313 (461)
+|.|.++.|++ | .+..+.++|++.. ..+. .....=+.+.|+|.+ ++++.++.| |.|.+||..
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~----------~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY----------FPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred eecccCCceeEEecccccceeecccccc-eEEe----------cCCcccccccccCcc-cEEEEecCCccccceEEeccC
Confidence 99999888776 4 5889999999843 2221 123334577899998 888887765 689999987
Q ss_pred CcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEe--c-----CCeEEEEEcc
Q 012535 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D-----YMTLKLWDIN 370 (461)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~--~-----d~~i~vwd~~ 370 (461)
....+ +..+.+. ...-+.|+|||+++.+. + |+.|.|||+.
T Consensus 349 ~rf~~---~~~~~~~--------------n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 349 GRFKV---AGAFNGL--------------NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CceEE---EEEeecC--------------CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 76542 2344443 35667899999998874 1 5789999996
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=3.7e-09 Score=99.46 Aligned_cols=201 Identities=15% Similarity=0.186 Sum_probs=116.1
Q ss_pred cccccceEEEEEcCCCCEEEEeecC---CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
..+...+...+|+|||+.|+..+.+ ..|.+|++.+++.. .+..+.+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---------------------~l~~~~g---------- 243 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---------------------QITNFEG---------- 243 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---------------------EccCCCC----------
Confidence 3566788999999999999876643 36888998876421 1112222
Q ss_pred cccccceEEEEEeecCCCcEEEE-EeCCC--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 109 LEIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
.+...+|+ +||+.|+. .+.++ .|.+||+.+++...+.... +... ...|+|+|+.
T Consensus 244 -----~~~~~~~S--pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------~~~~-------~~~~spDg~~ 300 (430)
T PRK00178 244 -----LNGAPAWS--PDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP---------AIDT-------EPFWGKDGRT 300 (430)
T ss_pred -----CcCCeEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC---------CCcC-------CeEECCCCCE
Confidence 24568898 56777764 44455 6888898887755432211 1111 5689999987
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-CC--eEEEEEc
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DL--RINLWNL 261 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~--~i~iwd~ 261 (461)
+ +++...++...+|. +. .... ...+....+ .......|+|+++.++.. . ++ .|.++|+
T Consensus 301 i-----------~f~s~~~g~~~iy~-~d-~~~g---~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 301 L-----------YFTSDRGGKPQIYK-VN-VNGG---RAERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred E-----------EEEECCCCCceEEE-EE-CCCC---CEEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence 5 24444445444443 11 1111 111111122 223356899999998876 3 33 5778888
Q ss_pred cCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC-C--eEEEEECCCc
Q 012535 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G--SIRLIDMRQS 315 (461)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g--~i~iwd~~~~ 315 (461)
.+++. ..+ .. ........|+|+| +.++..+.+ + .|.++++...
T Consensus 363 ~tg~~-~~l--------t~-~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 363 QRGSV-RIL--------TD-TSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCCE-EEc--------cC-CCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCC
Confidence 75432 221 11 1112356899999 777666543 3 4666676543
No 263
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=4.9e-08 Score=98.34 Aligned_cols=345 Identities=12% Similarity=0.141 Sum_probs=180.2
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCccccccccc--c--cccCCccccccccccCCCcch------h
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMD--Y--SMSRHPEFRYKTEFQSHEPEF------D 104 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~h~~~~------~ 104 (461)
...|.|++||||+..||..+.+|++.+.... -..+.+..-..+... . .+.| ++..+.|+|..... +
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGW---GkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGW---GKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeecc---CcccCccCcchhhhhhhhccC
Confidence 5689999999999999999999998886532 110000000000000 0 0000 01111222211100 0
Q ss_pred h-c-----cccccccceEEEEEeecCCCcEEEEEeC------CCeEEEEEccCCceeEEeeeecCCCccCCCCCcccccc
Q 012535 105 Y-L-----KSLEIEEKINKIRWCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (461)
Q Consensus 105 ~-~-----~~~~~~~~v~~v~~~p~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (461)
. + ..+..++.-..|+|- +||.+|++.+. -+.+|||+-+ |.+....+.. .|-
T Consensus 196 p~~~~~d~~~~s~dd~~~~ISWR--GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v--------~gL------ 258 (928)
T PF04762_consen 196 PTVPKVDEGKLSWDDGRVRISWR--GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV--------DGL------ 258 (928)
T ss_pred CCCCccccCccccCCCceEEEEC--CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC--------CCc------
Confidence 0 0 000122445678887 89999999863 2689999965 5544443311 011
Q ss_pred ccCcceeecCCCcccccccCCCCCccccccC---CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE
Q 012535 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGG---VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (461)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (461)
..+++|.|.|..+ ++... ...|.+|. ..+....+..-.+ ......|..++|++++..||
T Consensus 259 -e~~l~WrPsG~lI------------A~~q~~~~~~~VvFfE----rNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLA 320 (928)
T PF04762_consen 259 -EGALSWRPSGNLI------------ASSQRLPDRHDVVFFE----RNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILA 320 (928)
T ss_pred -cCCccCCCCCCEE------------EEEEEcCCCcEEEEEe----cCCcEeeeEecCC-CCCCceeeEEEECCCCCEEE
Confidence 1178999999975 43322 24555554 2222222111111 24456789999999999999
Q ss_pred Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccc---------
Q 012535 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--------- 319 (461)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~--------- 319 (461)
.. .|. |.+|-..+-.-..+.. + .+. ....+..+.|+|..+..|...+.+|.+..++..-.....
T Consensus 321 v~~~~~-vqLWt~~NYHWYLKqe-i---~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g 394 (928)
T PF04762_consen 321 VWLEDR-VQLWTRSNYHWYLKQE-I---RFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNG 394 (928)
T ss_pred EEecCC-ceEEEeeCCEEEEEEE-E---Ecc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCce
Confidence 98 544 9999876432111100 0 111 233345599999887888888887877666543211000
Q ss_pred ---------ccccccccccCCCccccc-cccccceeEEEEccCCCEEEE-ecCCeEEEEEccCCCCC-------eeEEee
Q 012535 320 ---------THSKLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGP-------VATFQV 381 (461)
Q Consensus 320 ---------~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~g~~l~s-~~d~~i~vwd~~~~~~~-------~~~~~~ 381 (461)
-.+..|....-|++...+ -....+|..++|++++..+++ -+||.|.+|........ ...+..
T Consensus 395 ~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 474 (928)
T PF04762_consen 395 TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL 474 (928)
T ss_pred EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc
Confidence 001122222222222211 123468999999998876665 56799999986531111 011111
Q ss_pred ccCccccccccccCCCccceeeEEEecCCCEEEEecCC---CeEEEEecCC
Q 012535 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSE 429 (461)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~ 429 (461)
+... .. ........+..++|..+..+++....+ ..+.++++..
T Consensus 475 ~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 475 DSMD---IS--DSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred cccc---cc--ccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 0000 00 000011123478888777766655544 6788888743
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=1e-09 Score=92.06 Aligned_cols=297 Identities=13% Similarity=0.168 Sum_probs=166.9
Q ss_pred ccccccceEEEEEcCCCC--EEEEeecCCcEEEEEcCCCCCCCCcc----ccccccccc--------ccCCccccccccc
Q 012535 31 EVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQR----RDLEMMDYS--------MSRHPEFRYKTEF 96 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~--~l~tg~~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~ 96 (461)
.+.-...|..+.|.++++ .++..+.|.+|++|.+.......... ........+ +....+..+.+.+
T Consensus 80 SleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~ 159 (433)
T KOG1354|consen 80 SLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY 159 (433)
T ss_pred hhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec
Confidence 445677899999998765 56677789999999987654321000 000000000 0011111222222
Q ss_pred -cCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC-ceeEEeeeecCCCccCCCCCcccccccc
Q 012535 97 -QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (461)
Q Consensus 97 -~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (461)
.+|. -.|++|.++ .|...++ ++.|=.|.+|+++-- +.-.+.......-..+ ...+.
T Consensus 160 aNaHt------------yhiNSIS~N--sD~Et~l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeL-teVIT------ 217 (433)
T KOG1354|consen 160 ANAHT------------YHINSISVN--SDKETFL-SADDLRINLWNLEIIDQSFNIVDIKPANMEEL-TEVIT------ 217 (433)
T ss_pred cccce------------eEeeeeeec--CccceEe-eccceeeeeccccccCCceeEEEccccCHHHH-HHHHh------
Confidence 2454 559999997 5655554 456778999998732 2222222221110000 00111
Q ss_pred CcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCc-----c----ccceeeEeeecccccceeeEEeCCCC
Q 012535 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-----N----LVAGCRRIYAHAHDYHINSISNNSDG 245 (461)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~-----~----~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (461)
+..|+|..-.+ ++..+..|.|++.| ++.... . .....-+.++..--..|.++.|+++|
T Consensus 218 -saEFhp~~cn~-----------f~YSSSKGtIrLcD-mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG 284 (433)
T KOG1354|consen 218 -SAEFHPHHCNV-----------FVYSSSKGTIRLCD-MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG 284 (433)
T ss_pred -hhccCHhHccE-----------EEEecCCCcEEEee-chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC
Confidence 45667665543 67889999999999 542111 0 11111122223344578899999999
Q ss_pred CEEEEeCCCeEEEEEccCCCCceeeeccCC------CCCCCCCcce---EEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 246 ETFISADDLRINLWNLEISNQSFNIVDVKP------ANMEDLTEVI---TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 246 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v---~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
+++++-+--+|++||+.....+.....+.. ..+. ..+.| ..++|+.++ ..+++|+....++++++..+.
T Consensus 285 ryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY-EnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 285 RYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY-ENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHh-hccchhheeEEEEcCCc-ceEecccccceEEEecCCCCc
Confidence 999998889999999976666655443221 0011 12223 467899888 899999999999999976664
Q ss_pred cccccccccccccCC-------Ccccccc--------------ccccceeEEEEccCCCEEEEecCCeEEEE
Q 012535 317 LCDTHSKLFEEQEAP-------GTRSFFT--------------EIIASISDIKFARNGRHILSRDYMTLKLW 367 (461)
Q Consensus 317 ~~~~~~~~~~~~~~~-------~~~~~~~--------------~h~~~v~~l~~s~~g~~l~s~~d~~i~vw 367 (461)
... .+++..... ..+.+.. .....+...+|+|....+|.+.-+.+++|
T Consensus 363 k~d---~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif 431 (433)
T KOG1354|consen 363 KED---FTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIF 431 (433)
T ss_pred cee---ecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEe
Confidence 321 111111111 0000000 11224556678888788887766667665
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=7.8e-09 Score=96.16 Aligned_cols=203 Identities=12% Similarity=0.118 Sum_probs=116.3
Q ss_pred ccceEEEEEcCCCCEE---EEeecCC--cEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 35 VDIISAIEFDKSGDHL---ATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l---~tg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...+.+-+|||||+.+ ++...+| .|.+.++.+++.. .+..+.+.
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---------------------~lt~~~g~---------- 232 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---------------------KILALQGN---------- 232 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------------------EeecCCCC----------
Confidence 3456778999999752 2444444 4666677766432 23333333
Q ss_pred ccccceEEEEEeecCCCcEEEEEeC-CC----eEEEEEccCC---ceeEEeeeecCCCccCCCCCccccccccCcceeec
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTN-DK----TIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~-d~----~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (461)
....+|+ +||+.|+..+. +| .+.+|++..+ +...+.... .+... ..+|+|
T Consensus 233 -----~~~p~wS--PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~--------~~~~~-------~p~wSP 290 (428)
T PRK01029 233 -----QLMPTFS--PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA--------FGTQG-------NPSFSP 290 (428)
T ss_pred -----ccceEEC--CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC--------CCCcC-------CeEECC
Confidence 3457898 66777776542 23 3444666543 222222111 01111 568999
Q ss_pred CCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C---CCeEE
Q 012535 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRIN 257 (461)
Q Consensus 182 ~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---d~~i~ 257 (461)
||+.+ +++...+|...+|. +....... . .+. +..+...+....|+|+|+.|+.. . ...|.
T Consensus 291 DG~~L-----------af~s~~~g~~~ly~-~~~~~~g~--~-~~~-lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 291 DGTRL-----------VFVSNKDGRPRIYI-MQIDPEGQ--S-PRL-LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred CCCEE-----------EEEECCCCCceEEE-EECccccc--c-eEE-eccCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 99975 24444567666665 22111000 1 111 12333456788999999988865 2 34789
Q ss_pred EEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec---CCeEEEEECCCcc
Q 012535 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSA 316 (461)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~iwd~~~~~ 316 (461)
+||+.+++.. . +......+....|+|+| +.|+.... ...|.++|+..++
T Consensus 355 v~dl~~g~~~-~--------Lt~~~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 355 VYDLATGRDY-Q--------LTTSPENKESPSWAIDS-LHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEECCCCCeE-E--------ccCCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCC
Confidence 9999855432 2 22223346778999999 66665433 3568888987765
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.17 E-value=1.1e-07 Score=84.19 Aligned_cols=255 Identities=9% Similarity=0.074 Sum_probs=141.4
Q ss_pred EcCCCCEEEEeec----------CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 43 FDKSGDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 43 ~s~~g~~l~tg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
+||||+.|+++.. +..|.+||..+.+..++... +-.|+ .. .+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~---------p~~p~--~~---~~-------------- 104 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL---------PEGPR--FL---VG-------------- 104 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc---------CCCch--hh---cc--------------
Confidence 8999998887765 67999999998764311100 00000 00 00
Q ss_pred cceEEEEEeecCCCcEEEEEe-C-CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 113 EKINKIRWCQSANSALYLLST-N-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~-~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..-..++++ +||+++++.. . +..|.+.|+.+++........... ..........+....||..+
T Consensus 105 ~~~~~~~ls--~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~--------~vy~t~e~~~~~~~~Dg~~~---- 170 (352)
T TIGR02658 105 TYPWMTSLT--PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY--------HIFPTANDTFFMHCRDGSLA---- 170 (352)
T ss_pred CccceEEEC--CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc--------EEEEecCCccEEEeecCceE----
Confidence 113467777 6788888775 3 799999999999887766653210 00000000011222233221
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccccccee-eEEeCC-CCCEEEEeCCCeEEEEEccCCCCc-
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNS-DGETFISADDLRINLWNLEISNQS- 267 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~-~~~~l~~~~d~~i~iwd~~~~~~~- 267 (461)
.++-+.+|+... .....+ ......+. .-.|.+ ++..+..+..|.|.+.|+...+..
T Consensus 171 -------~v~~d~~g~~~~-------------~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~ 229 (352)
T TIGR02658 171 -------KVGYGTKGNPKI-------------KPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKF 229 (352)
T ss_pred -------EEEecCCCceEE-------------eeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCccee
Confidence 111222222111 011111 11000000 003455 788888885599999997543222
Q ss_pred ---eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe----------cCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 268 ---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
+.++......-....+...-++++|++ +.+++.. ..+.|.++|..+++. +..+...
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv----i~~i~vG------ 298 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKR----LRKIELG------ 298 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeE----EEEEeCC------
Confidence 111111100001133444559999998 6665532 125799999998876 3444332
Q ss_pred ccccccccceeEEEEccCCC-EEEEec--CCeEEEEEccCCCCCeeEE
Q 012535 335 SFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~-~l~s~~--d~~i~vwd~~~~~~~~~~~ 379 (461)
..+..++++|||+ +|++.+ ++.|.++|..+ ++.+..+
T Consensus 299 -------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 299 -------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred -------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 3588999999999 777655 48999999986 7777776
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.14 E-value=8e-08 Score=96.83 Aligned_cols=317 Identities=14% Similarity=0.152 Sum_probs=177.1
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEE----cCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFE----RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+.|.++.+-++...|+.+..+|.|.+.. ..+.. .+.-|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-------------------------~E~VG----------- 117 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-------------------------IEIVG----------- 117 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-------------------------eEEEE-----------
Confidence 457899999999999999999999999993 32221 01111
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccC-------------CceeEE--------eeeecCCCccC------
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-------------KKVKKV--------FDWNVHPEKAA------ 162 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~-------------~~~~~~--------~~~~~~~~~~~------ 162 (461)
.++..|.+++|| ||+..++..+.++++.+..-.- +.-+.+ .+.+....+..
T Consensus 118 ~vd~GI~a~~WS--PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 118 SVDSGILAASWS--PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred EEcCcEEEEEEC--CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence 112679999999 5677999999999887764221 100000 11111111110
Q ss_pred ------CCCCccccccccCcceeecCCCcccccccCCCCCccccccC------CCcEEeeeeecccCccccceeeEeeec
Q 012535 163 ------GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG------VSSLRLPVVVTSQETNLVAGCRRIYAH 230 (461)
Q Consensus 163 ------~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~~~~ 230 (461)
..+.+. .......++|..||.+. ++.+. -..+++|+ .++...... .
T Consensus 196 p~~~~~d~~~~s-~dd~~~~ISWRGDG~yF------------AVss~~~~~~~~R~iRVy~----ReG~L~stS-----E 253 (928)
T PF04762_consen 196 PTVPKVDEGKLS-WDDGRVRISWRGDGEYF------------AVSSVEPETGSRRVIRVYS----REGELQSTS-----E 253 (928)
T ss_pred CCCCccccCccc-cCCCceEEEECCCCcEE------------EEEEEEcCCCceeEEEEEC----CCceEEecc-----c
Confidence 011111 12223367888888875 43332 35788887 433211111 2
Q ss_pred ccccceeeEEeCCCCCEEEEe-C---CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCe
Q 012535 231 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (461)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 306 (461)
.-.+--.+++|.|.|+++|+. . ...|.+|..+ +.+--. +.+ .+......|..+.|++++ .+||.-..|.
T Consensus 254 ~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhge-F~l---~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~- 326 (928)
T PF04762_consen 254 PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGE-FTL---RFDPEEEKVIELAWNSDS-EILAVWLEDR- 326 (928)
T ss_pred cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeee-Eec---CCCCCCceeeEEEECCCC-CEEEEEecCC-
Confidence 222333478999999999987 2 4667777654 322211 111 123456788999999998 8999877665
Q ss_pred EEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC-CEEEEec-CCeEEEEEc----cCC-------C
Q 012535 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDI----NMD-------S 373 (461)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g-~~l~s~~-d~~i~vwd~----~~~-------~ 373 (461)
|.+|-..+-.--- .+.+.-.. ...+..+.|+|.. ..|.... .|.+..+++ ... .
T Consensus 327 vqLWt~~NYHWYL--Kqei~~~~-----------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~ 393 (928)
T PF04762_consen 327 VQLWTRSNYHWYL--KQEIRFSS-----------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN 393 (928)
T ss_pred ceEEEeeCCEEEE--EEEEEccC-----------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence 9999887653111 11111111 0234458888843 3344433 255544333 210 0
Q ss_pred CCeeEEeeccCccccc--------cccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 374 GPVATFQVHEHLRPKL--------CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 374 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
..+..+.|..-.+..+ ...+.-.....|.+++|++++..+++-..||.|.+|.....
T Consensus 394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 1233333322111111 11111111224569999999988999999999999997654
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=6.4e-10 Score=102.38 Aligned_cols=302 Identities=14% Similarity=0.192 Sum_probs=185.8
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.-.+.+.+++++|.|+-+|.++.-| +.+-|+...-. ..+.+..+..-.
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-------------------ppr~l~h~tpw~------------ 69 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-------------------PPRWLHHITPWQ------------ 69 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-------------------CceeeeccCcch------------
Confidence 3467889999999999999999887 55667654211 112222222222
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC---ceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
|-.+.|+|.+.-.+-++......-.+|++... .+......+ ...+. .+.|.|...
T Consensus 70 --vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhgh--------srait-------d~n~~~q~p----- 127 (1081)
T KOG0309|consen 70 --VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGH--------SRAIT-------DINFNPQHP----- 127 (1081)
T ss_pred --hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecC--------cccee-------ccccCCCCC-----
Confidence 77888988766667777666666778987632 222222222 11222 445555544
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEeCCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~ 268 (461)
+++++++.|..+..|| +..... +...+ ..-......++|+.. +..+|+...+.|++||++.+..+.
T Consensus 128 ------dVlatcsvdt~vh~wd-~rSp~~-----p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl 194 (1081)
T KOG0309|consen 128 ------DVLATCSVDTYVHAWD-MRSPHR-----PFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL 194 (1081)
T ss_pred ------cceeeccccccceeee-ccCCCc-----ceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcce
Confidence 4589999999999999 543322 11122 122234567888865 556666677889999999776554
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
. .+++|-..|+.++|...-...+.+++.||+|++||........++ +.... .+|..-.
T Consensus 195 ~-------s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~--~vtt~-------------~piw~~r 252 (1081)
T KOG0309|consen 195 C-------SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR--TVTTN-------------FPIWRGR 252 (1081)
T ss_pred E-------EecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce--ecccc-------------Ccceecc
Confidence 3 466788889999998754467899999999999999775432221 11111 3466666
Q ss_pred EccCC--CEEEE-ecCCeEE---------EEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC--CEEE
Q 012535 349 FARNG--RHILS-RDYMTLK---------LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVA 414 (461)
Q Consensus 349 ~s~~g--~~l~s-~~d~~i~---------vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~ 414 (461)
+.|-| .++.- -+++.+- .|+......++++|.||...+.....-... .+.+.-|. -.|+
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~-------e~~~d~d~rdfQLV 325 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK-------ECDGDYDSRDFQLV 325 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc-------cccCCCCccceeEE
Confidence 66633 33321 1222333 355544467899999999766311100000 11122222 2689
Q ss_pred EecCCCeEEEEecCCC
Q 012535 415 TGSYSNLFRVFGCSEG 430 (461)
Q Consensus 415 s~~~dg~i~iw~~~~~ 430 (461)
+-+.|..+++|-+.+.
T Consensus 326 TWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 326 TWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred EeecCCceEeeeccHH
Confidence 9999999999999863
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=1.3e-07 Score=97.29 Aligned_cols=293 Identities=13% Similarity=0.093 Sum_probs=153.7
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcc-ccccccCcceeecCCCcccccccCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF-GSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
..+++++ .++..+++-+.++.|+++|..... ........... ...|... .....|..+++.+++..+
T Consensus 571 ~gvavd~-~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G--~~dG~~~~a~f~~P~GIavd~~gn~L-------- 638 (1057)
T PLN02919 571 GKLAIDL-LNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEG--LRDGSFEDATFNRPQGLAYNAKKNLL-------- 638 (1057)
T ss_pred ceEEEEC-CCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcC--CCCCchhccccCCCcEEEEeCCCCEE--------
Confidence 3577764 245566666788999999986543 22222111000 0011100 111234478888887653
Q ss_pred CCccccccCCCcEEeeeeecccCcccccee-eE--eeecc------cccceeeEEeCCC-CCEEEEe-CCCeEEEEEccC
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGC-RR--IYAHA------HDYHINSISNNSD-GETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~--~~~~~------~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~ 263 (461)
+++-..+..|+.+| ............ .. .+..+ .-.....++++|+ +.++++. .++.|++||..+
T Consensus 639 ---YVaDt~n~~Ir~id-~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 639 ---YVADTENHALREID-FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred ---EEEeCCCceEEEEe-cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 23444556788777 322111000000 00 00000 0123467999995 5555555 689999999875
Q ss_pred CCCceeeec-cCCCCCCC------CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccc---------ccccccc
Q 012535 264 SNQSFNIVD-VKPANMED------LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---------HSKLFEE 327 (461)
Q Consensus 264 ~~~~~~~~~-~~~~~~~~------~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------~~~~~~~ 327 (461)
+... .+.. -......+ .-.....++++|++..++++-+.++.|++||+.++..... ....+..
T Consensus 715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 4211 1100 00000011 1234678999999833666777789999999987642100 0000000
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
...... ...-....+++++++|.++++-. ++.|++||..+ + .+..+.+...... ...............+++
T Consensus 794 ~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g-~v~tiaG~G~~G~-~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 794 HDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-K-RVTTLAGTGKAGF-KDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred CCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-C-eEEEEeccCCcCC-CCCcccccccCCceEEEE
Confidence 000000 00112346899999998777654 59999999974 3 3334433221000 000000011111248999
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
+++|+++++-+.++.|++||+.+++.
T Consensus 867 d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 867 GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999999999999999998764
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.09 E-value=1.2e-07 Score=83.47 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=110.7
Q ss_pred CCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC-eEEEEECCCcccccccc
Q 012535 244 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHS 322 (461)
Q Consensus 244 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 322 (461)
+|++++..+-|...+.+... ...++ -++...|.-..+.-+. .-++.|..|| .+-|||.++++.
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~-~~~iq---------v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~----- 394 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWD-GYSIQ---------VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEV----- 394 (668)
T ss_pred CCcEEEEEecCcEEEECCCC-CeeEE---------cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceE-----
Confidence 47777777778888877652 22322 2366779888888887 6899999999 899999999873
Q ss_pred cccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEee-ccCccccccccccCCCccc
Q 012535 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFD 400 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 400 (461)
..++..- +.|.++..+++|++++++++ ..+.+.|+.+ +... .+.. ..+.
T Consensus 395 kr~e~~l------------g~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~-~idkS~~~l--------------- 445 (668)
T COG4946 395 KRIEKDL------------GNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVR-LIDKSEYGL--------------- 445 (668)
T ss_pred EEeeCCc------------cceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCee-Eecccccce---------------
Confidence 3344332 67999999999999999998 8999999986 4433 3322 2222
Q ss_pred eeeEEEecCCCEEEEecCCC----eEEEEecCCCCccceee
Q 012535 401 KFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTL 437 (461)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg----~i~iw~~~~~~~~~~~~ 437 (461)
|+.+.|+|+++++|-+--+| .|+++|+.+++....+-
T Consensus 446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 35999999999999876554 78999999886554443
No 271
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=2.3e-09 Score=102.58 Aligned_cols=190 Identities=16% Similarity=0.129 Sum_probs=136.8
Q ss_pred CCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCC
Q 012535 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (461)
Q Consensus 125 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 204 (461)
+...++.++.++.+.+||...+........... ..+.... ...++++.- ++++|+.-
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er--~~l~~~~---------~~g~s~~~~------------~i~~gsv~ 154 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER--CTLYSSL---------IIGDSAEEL------------YIASGSVF 154 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCce--EEEEeEE---------EEeccCcEE------------EEEecccc
Confidence 456888999999999999987654433221110 0000000 112223333 35899999
Q ss_pred CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCc
Q 012535 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (461)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (461)
+.|.+|+ ... +... ..+.+|.+.+.++.++.+|.++++. +|.++++|++++.+... ....+|..
T Consensus 155 ~~iivW~-~~~-dn~p------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsa 219 (967)
T KOG0974|consen 155 GEIIVWK-PHE-DNKP------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSA 219 (967)
T ss_pred ccEEEEe-ccc-cCCc------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------cccccccc
Confidence 9999999 331 1111 1348999999999999999999999 89999999999776553 14667999
Q ss_pred ceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CC
Q 012535 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM 362 (461)
Q Consensus 284 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~ 362 (461)
.|+.+.|.|. .+++++.|.+.++|+....+ +..++.|.. ..+..++..++...++++. |+
T Consensus 220 Rvw~~~~~~n---~i~t~gedctcrvW~~~~~~-----l~~y~~h~g-----------~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 220 RVWACCFLPN---RIITVGEDCTCRVWGVNGTQ-----LEVYDEHSG-----------KGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred eeEEEEeccc---eeEEeccceEEEEEecccce-----ehhhhhhhh-----------cceeEEEEcCCceEEEeeccCc
Confidence 9999999986 79999999999999776554 235555532 4689999998888888854 79
Q ss_pred eEEEEEccC
Q 012535 363 TLKLWDINM 371 (461)
Q Consensus 363 ~i~vwd~~~ 371 (461)
.+++||+..
T Consensus 281 ~lk~~~l~~ 289 (967)
T KOG0974|consen 281 TLKLWDLNG 289 (967)
T ss_pred chhhhhhhc
Confidence 999999864
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=6e-08 Score=78.91 Aligned_cols=254 Identities=12% Similarity=0.083 Sum_probs=156.0
Q ss_pred EEEEEcC-----CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 39 SAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 39 ~~~~~s~-----~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
..|.|-| .-.+||.|+..|...+|...+.+.. ......|.... .
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h----------------------~~~cd~snn~v---------~ 119 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH----------------------LYQCDVSNNDV---------T 119 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccc----------------------eeeecccccch---------h
Confidence 3466666 2348999999999999998866531 11112222000 0
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
-+...+-+ ...+..++.|.++++.+++.+........+. -.+. +++++++++..
T Consensus 120 ~~~r~cd~----~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--------~~~n-------s~~~snd~~~~------- 173 (344)
T KOG4532|consen 120 LVKRYCDL----KFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--------LTQN-------SLHYSNDPSWG------- 173 (344)
T ss_pred hhhhhccc----ccceeeccCCcceeEEEEecCcccceeeccc--------ccee-------eeEEcCCCceE-------
Confidence 01112221 2357788999999999988765443332220 0011 67889999985
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
++.+....|..|. +....... .+......+..=.+..|+.....+|++ .||++.|||++....+....
T Consensus 174 -----~~Vgds~~Vf~y~-id~~sey~----~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~- 242 (344)
T KOG4532|consen 174 -----SSVGDSRRVFRYA-IDDESEYI----ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI- 242 (344)
T ss_pred -----EEecCCCcceEEE-eCCcccee----eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh-
Confidence 8888889999887 43322211 122223334445578899999999999 89999999999766554321
Q ss_pred cCCCCCCCCCcceEEEEEeCCCC-CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 273 VKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
..+-+.|.+.++.+.|+|.|. .+|...-.-+.+.+.|+|+...+.. +...+.. .+...+..|..-.|+.
T Consensus 243 --sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d~-------~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 243 --SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDDV-------ERKHNTQHIFGTNFNN 312 (344)
T ss_pred --cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCccc-------cccccccccccccccC
Confidence 123455899999999998663 3555555667899999999865321 1111111 1111123477777887
Q ss_pred CCCEEEEecCCeEEEEEcc
Q 012535 352 NGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 352 ~g~~l~s~~d~~i~vwd~~ 370 (461)
++.-+.+.+.-.+.-|++.
T Consensus 313 ~n~s~~v~~e~~~ae~ni~ 331 (344)
T KOG4532|consen 313 ENESNDVKNELQGAEYNIL 331 (344)
T ss_pred CCcccccccchhhheeecc
Confidence 7766666655455566664
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=4.3e-07 Score=93.50 Aligned_cols=290 Identities=10% Similarity=0.074 Sum_probs=154.1
Q ss_pred EEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEE
Q 012535 39 SAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (461)
Q Consensus 39 ~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (461)
..++++++ ++++++-+.++.|++||..+.... ....... .-..+..+. .+.- .....
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~-----~ig~~g~--~G~~dG~~~---~a~f------------~~P~G 628 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV-----QIGSTGE--EGLRDGSFE---DATF------------NRPQG 628 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE-----EEccCCC--cCCCCCchh---cccc------------CCCcE
Confidence 46788874 556666677889999997643210 0000000 000000000 0000 23578
Q ss_pred EEEeecCCCcEEEEE-eCCCeEEEEEccCCceeEEeeeecCCCccCCCCC--ccccccccCcceeecCCCcccccccCCC
Q 012535 118 IRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP--IFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 118 v~~~p~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
|++.+ +++.|+++ ...+.|+++|+.++....+..... .......+. .......|..++++|++..+
T Consensus 629 Iavd~--~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~-~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L-------- 697 (1057)
T PLN02919 629 LAYNA--KKNLLYVADTENHALREIDFVNETVRTLAGNGT-KGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV-------- 697 (1057)
T ss_pred EEEeC--CCCEEEEEeCCCceEEEEecCCCEEEEEeccCc-ccCCCCCChhhhHhhcCCCeEEEEecCCCeE--------
Confidence 88984 45556555 456789999988876444322110 000000000 00011233368888854433
Q ss_pred CCccccccCCCcEEeeeeecccCcccc-cee-eEee-----ecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCC
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLV-AGC-RRIY-----AHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~-~~~~-----~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~ 265 (461)
+++...++.|++|| ......... ... .... ....-.....++++|+++.|+.+ .++.|++||+.++.
T Consensus 698 ---yVad~~~~~I~v~d-~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 698 ---YIAMAGQHQIWEYN-ISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred ---EEEECCCCeEEEEE-CCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 36777888899988 322111000 000 0000 00111345679999999866655 68999999988544
Q ss_pred Cceeee-c-cCC---CCCC--------CCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 266 QSFNIV-D-VKP---ANME--------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 266 ~~~~~~-~-~~~---~~~~--------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
.....- + ..+ ..+. ..-.....++++++| .++++-..++.|++||..++.. .++.+....+
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v-----~tiaG~G~~G 847 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRV-----TTLAGTGKAG 847 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeE-----EEEeccCCcC
Confidence 211000 0 000 0000 011235689999998 8888889999999999987653 2221111000
Q ss_pred c--cccccccccceeEEEEccCCCEEEEec-CCeEEEEEccC
Q 012535 333 T--RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 333 ~--~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~ 371 (461)
. -....+.-.....++++++|+.+++-. ++.|++||+.+
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 0 000112224578899999999777744 59999999986
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=1.6e-07 Score=76.55 Aligned_cols=242 Identities=9% Similarity=0.017 Sum_probs=145.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCcee-EEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 204 (461)
..+|+.|+..|...+|...+.+.. .....+... +.. ....|...-.+..++.|
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~------------------v~~--------~~r~cd~~~~~~i~snd 137 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNND------------------VTL--------VKRYCDLKFPLNIASND 137 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccc------------------hhh--------hhhhcccccceeeccCC
Confidence 458999999999999998865432 222222110 000 00111222234778888
Q ss_pred CcEEeeeeecccCccccceeeEeeecccc--cceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCC
Q 012535 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHD--YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (461)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (461)
.++++.+ +..... .. .-|. -.+.+++++++++++++. +...|..|.+....+....+ .....
T Consensus 138 ht~k~~~-~~~~s~---~~------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t 202 (344)
T KOG4532|consen 138 HTGKTMV-VSGDSN---KF------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPT 202 (344)
T ss_pred cceeEEE-EecCcc---cc------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----Eeccc
Confidence 8888887 332221 11 1222 237889999999999987 78899999988655443221 12224
Q ss_pred CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCC--EEEEe
Q 012535 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSR 359 (461)
Q Consensus 282 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~--~l~s~ 359 (461)
.+.-.+..|+... ..+|++..||++.|||+|..... ...... .-..|.+++..+.|++-|. +|+-.
T Consensus 203 ~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp----m~~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 203 SDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP----MAEISS-------TRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred CCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc----hhhhcc-------cCCCCCCceEEEEecCCCcceEEEEe
Confidence 4555788999988 89999999999999999986532 111111 1122568999999998553 34444
Q ss_pred c-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 360 D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 360 ~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
. -+.+.+-|+++ ....+.+......- ......+|+...|+.++.-+.+.+++ .+.=|++.+
T Consensus 271 Ehfs~~hv~D~R~-~~~~q~I~i~~d~~-------~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 271 EHFSRVHVVDTRN-YVNHQVIVIPDDVE-------RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cCcceEEEEEccc-CceeeEEecCcccc-------ccccccccccccccCCCcccccccch-hhheeeccc
Confidence 4 48999999996 55444443322110 00111223467777776666555543 344555543
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=9.3e-09 Score=84.61 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=126.0
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeeccccc---ceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeecc
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
++.+...|.|.+|. ....+.. -..+.. ..... ...++.|++.+..++++ ++|.+.+-+.... ...+
T Consensus 88 l~~a~a~G~i~~~r-~~~~~ss---~~L~~l-s~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~---- 157 (339)
T KOG0280|consen 88 LLDAHARGQIQLYR-NDEDESS---VHLRGL-SSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-VLEK---- 157 (339)
T ss_pred eeeccccceEEEEe-eccceee---eeeccc-chhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-eeee----
Confidence 46777888999887 2221111 111110 11111 23467788889889999 8999985543321 1111
Q ss_pred CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccc-cccccCCCccccccccccceeEEEEcc-
Q 012535 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL-FEEQEAPGTRSFFTEIIASISDIKFAR- 351 (461)
Q Consensus 274 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~- 351 (461)
-..++.|.-.++...|+-..++++.+|+.|+.+..||+|....+ +.. -+ -|...|.++.-+|
T Consensus 158 -vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~---i~~n~k------------vH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 158 -VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF---IWHNSK------------VHTSGVVSIYSSPP 221 (339)
T ss_pred -cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce---eeecce------------eeecceEEEecCCC
Confidence 12577899999999999988899999999999999999943311 111 12 2447899998887
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC--CCEEEEecCCCeEEEEecC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--GGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~ 428 (461)
.+.++++|+ |-.|++||.++.++++..-.... .||.+.++|. +++|+++-..| .+|-+..
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G----------------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~ 284 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG----------------GVWRIKHHPEIFHRLLAACMHNG-AKILDSS 284 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCcccc----------------ceEEEEecchhhhHHHHHHHhcC-ceEEEec
Confidence 678999998 48999999997677775443322 2478888885 34555555544 5666666
Q ss_pred CCCc
Q 012535 429 EGSA 432 (461)
Q Consensus 429 ~~~~ 432 (461)
.+..
T Consensus 285 ~~~~ 288 (339)
T KOG0280|consen 285 DKVL 288 (339)
T ss_pred cccc
Confidence 5543
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=3.8e-09 Score=106.49 Aligned_cols=194 Identities=17% Similarity=0.258 Sum_probs=134.1
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.++.=+|. ..+.++|+.||.|++|....+.......... ...+. ...|+.+|.-
T Consensus 2209 ~~v~r~~sHp~--~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-------~s~vt-------r~~f~~qGnk------- 2265 (2439)
T KOG1064|consen 2209 ENVRRMTSHPS--DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-------NSRVT-------RSRFNHQGNK------- 2265 (2439)
T ss_pred CceeeecCCCC--CceEEecCCCceEEEEeccCCCeEEEeeccC-------cchhh-------hhhhcccCCc-------
Confidence 34666666643 4589999999999999988776554433221 12222 4566666654
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe----CCCeEEEEEccCCCCce
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSF 268 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~ 268 (461)
+..+..||.+.+|. +. .++.-. .+.|.....++.|-. ..++++ +++.+.+||........
T Consensus 2266 -----~~i~d~dg~l~l~q-~~-------pk~~~s-~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2266 -----FGIVDGDGDLSLWQ-AS-------PKPYTS-WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred -----eeeeccCCceeecc-cC-------Ccceec-cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc
Confidence 47889999999998 32 111111 267777888888765 455553 48999999976433222
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
-+ -..|.+.++++++-|.. ++|++|+.+|.|++||++..++ .+++..
T Consensus 2330 ~v-------~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql----~h~~~~--------------------- 2376 (2439)
T KOG1064|consen 2330 LV-------HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQL----RHTFQA--------------------- 2376 (2439)
T ss_pred ee-------eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHH----HHHhhh---------------------
Confidence 11 25699999999999998 9999999999999999998775 333321
Q ss_pred EccCCCEEEEec-CCeEEEEEccCCCCCeeEEe
Q 012535 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 349 ~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 380 (461)
+. ...++++|+ .|.++||++.. -..++.+.
T Consensus 2377 ~~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 LD-TREYFVTGSSEGNIKIWRLSE-FGLLHTFP 2407 (2439)
T ss_pred hh-hhheeeccCcccceEEEEccc-cchhhcCc
Confidence 33 446788887 59999999985 45555554
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=4.6e-07 Score=75.03 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=116.3
Q ss_pred ceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCC-----CCeEEEEecCCeEE
Q 012535 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-----CNMLAYSSSKGSIR 308 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-----~~~l~~~~~dg~i~ 308 (461)
.=+.++|+||+.+||.+ +.|+|+++|+. +...+.+.... .........|..+.|.+.. ...|++-..+|.++
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVIPPAM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEcCccc-ccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 45689999999999999 89999999997 44444332111 1111234567777776532 13566677888888
Q ss_pred EEECCCc---ccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C--C---------eEEEEEccCCC
Q 012535 309 LIDMRQS---ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--M---------TLKLWDINMDS 373 (461)
Q Consensus 309 iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d--~---------~i~vwd~~~~~ 373 (461)
=|-+..+ .....+...|..+ +...|.++.++|.-++|+.|+ . . -+.-|.+-. +
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~-----------yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~ 190 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSH-----------YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-D 190 (282)
T ss_pred eEEEEcccCCcceeeEEEEeccc-----------CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-C
Confidence 7776432 1112222222222 236899999999988888753 1 1 366777654 3
Q ss_pred CCeeEEee-ccCccc---------cccc--cc--cCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeecc
Q 012535 374 GPVATFQV-HEHLRP---------KLCD--LY--ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (461)
Q Consensus 374 ~~~~~~~~-~~~~~~---------~~~~--~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 439 (461)
.+...... .+..+. ++.. ++ ..+....|+.++.||||..||+...+|.|.+|++.+-.+. ..+..
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~-~~W~~ 269 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ-RSWKQ 269 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh-cccch
Confidence 33322211 111110 0011 01 0122334569999999999999999999999999976544 34444
Q ss_pred CCCC
Q 012535 440 SKNP 443 (461)
Q Consensus 440 ~~~~ 443 (461)
++.|
T Consensus 270 ~eqP 273 (282)
T PF15492_consen 270 DEQP 273 (282)
T ss_pred hhCC
Confidence 4433
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=1.1e-08 Score=87.84 Aligned_cols=158 Identities=11% Similarity=0.180 Sum_probs=99.1
Q ss_pred eeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC---eEEEEE
Q 012535 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLID 311 (461)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~iwd 311 (461)
+..+..++.++++|.+ .+....+++++...+..+..+.. . .....+++.|..+. .....+..-| .+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~---v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--C---VPKRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--e---cccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 3445677889999988 67777777776444322221111 1 12223344444443 3333333333 444444
Q ss_pred CCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeE-EeeccCccccc
Q 012535 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVAT-FQVHEHLRPKL 389 (461)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~ 389 (461)
...+.. .. .-||..-++.++|+||+++|++++ |..||+-.... ...+.. .-||...|.
T Consensus 139 ~~~~~~-----~~------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS-- 198 (390)
T KOG3914|consen 139 ADSGRC-----EP------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVS-- 198 (390)
T ss_pred ccccCc-----ch------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhee--
Confidence 333221 22 234558899999999999999998 69999987764 333333 346888774
Q ss_pred cccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.++.- ++..|++||.|++|++||+.+|+..
T Consensus 199 -------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 -------------TISLT-DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -------------eeeec-cCceeeecCCCCcEEEEecccCCcc
Confidence 56665 4556999999999999999999866
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=5.2e-09 Score=88.01 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=113.7
Q ss_pred EeCCC--CCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 240 SNNSD--GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 240 ~~~~~--~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
+|+-+ +-.+.+|-+..+.+-|++++-.. .+. ..+.|.++.|...+ .++..|+.+|.|..+|++.+..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeeccc
Confidence 45433 33344566778888888865433 233 56778999999887 8999999999999999987621
Q ss_pred ccccccccccccCCCccccccccccceeEEEEcc-CCCEEEEec-CCeEEEEEccCCCCC---eeEEeeccCcccccccc
Q 012535 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDL 392 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~g~~l~s~~-d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~ 392 (461)
-...... .--|...|+++..-. ++++|++++ +|+|++||++. -+. +..+.+|.+.-..+
T Consensus 287 G~~~~a~------------rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l--- 350 (425)
T KOG2695|consen 287 GNGWCAQ------------RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYL--- 350 (425)
T ss_pred CCCcceE------------EEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeeccccccccc---
Confidence 0000001 111337788888776 677887766 69999999985 455 88899998754322
Q ss_pred ccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeec
Q 012535 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (461)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 438 (461)
-+-..+....++++++|...+||.++.|... .++.
T Consensus 351 ----------~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl-~tip 385 (425)
T KOG2695|consen 351 ----------PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL-CTIP 385 (425)
T ss_pred ----------ccccccccceEEEccCeeEEEEEecccCcee-eccC
Confidence 3445667788999999999999999998765 4443
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=2.9e-08 Score=85.35 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=66.7
Q ss_pred cccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEE
Q 012535 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 308 (461)
.||-..+.+++|+||+++++++ .|..|++-.....-..- .-.-||...|..++.-++ +.|++|+.|++++
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie-------sfclGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE-------SFCLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh-------hhccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 6899999999999999999999 79999998776322211 125679999999999987 4799999999999
Q ss_pred EEECCCccc
Q 012535 309 LIDMRQSAL 317 (461)
Q Consensus 309 iwd~~~~~~ 317 (461)
+||+++++.
T Consensus 219 ~Wd~~sgk~ 227 (390)
T KOG3914|consen 219 LWDITSGKL 227 (390)
T ss_pred EEecccCCc
Confidence 999999986
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7e-08 Score=84.21 Aligned_cols=316 Identities=14% Similarity=0.147 Sum_probs=195.5
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
-|.+.|+.+.-+. .+++.+++.||.++.|--..-. ...++..+..|.
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL------------ 53 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL------------ 53 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH------------
Confidence 4788887776554 5699999999999999865422 123666778887
Q ss_pred cceEEEEEeecCCCcEEEEEeC-CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCccee-ecCCCcccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-MANGGCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~~ 190 (461)
..|.+++.+ .++.++.+.+. |..++++|+.+-..........-|. ...| ...|..+.
T Consensus 54 ~~I~sl~~S--~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg----------------~a~wv~skGd~~s--- 112 (558)
T KOG0882|consen 54 GVILSLAVS--YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG----------------FAEWVTSKGDKIS--- 112 (558)
T ss_pred HHHHhhhcc--ccceeEeeccCcccceeEEEeeccchhhhcccccCCC----------------ceEEecCCCCeee---
Confidence 668888887 77888888776 9999999998766554333322211 1111 12221110
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCC-CCce
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS-NQSF 268 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~-~~~~ 268 (461)
...++.-.++.+.++| ...... ....+..-|..+|..+.+++.+..+++. ..|.|..|..... +.+.
T Consensus 113 -----~IAVs~~~sg~i~VvD----~~~d~~--q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr 181 (558)
T KOG0882|consen 113 -----LIAVSLFKSGKIFVVD----GFGDFC--QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPR 181 (558)
T ss_pred -----eEEeecccCCCcEEEC----CcCCcC--ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcc
Confidence 0124556778888888 222111 1112235688999999999999999998 6999999988731 1111
Q ss_pred e--eeccCC----CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc-----CCCcc---
Q 012535 269 N--IVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-----APGTR--- 334 (461)
Q Consensus 269 ~--~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~--- 334 (461)
. .+..|. ..+........++.|+|++ ..+.+-..|..|++++.+++++. +.++... .+...
T Consensus 182 ~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklv----qeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 182 TNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLV----QEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhh----hhhhccchhhhhcccccccc
Confidence 1 011111 1223345677899999999 89999999999999999998763 2221110 00000
Q ss_pred ------------ccccccc-cceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCcccc-------------
Q 012535 335 ------------SFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPK------------- 388 (461)
Q Consensus 335 ------------~~~~~h~-~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------------- 388 (461)
..+..|. ..-+.+.|...|++|+-|+-=-|++.++.+ +...+.+-..+ .++-
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e-~ir~~~~sl~q~~~k~~ 334 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDE-AIRFTRLSLYQGAQKSN 334 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccch-hhhhhhHHHHhhhhhcc
Confidence 0011121 234567899999999998875688999886 55544442211 1110
Q ss_pred ---ccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 389 ---LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 389 ---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
+.....++. .+.+.+|...++++-..+++++|
T Consensus 335 ~~~~~~~a~~np-----~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 335 LAALEVAASNNP-----LLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred chhhhhhhccCc-----ccccCCCCeEEEeeeecceEEEE
Confidence 000011111 34466777788888888888888
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.91 E-value=5e-08 Score=82.18 Aligned_cols=258 Identities=12% Similarity=0.164 Sum_probs=155.4
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEcc-CCceeEEeeeecCCCccCCCCCccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFG 169 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (461)
.++..+.||. +.|+....-|..+ -+++.+.|.+++||--. .++.-..+....
T Consensus 15 ~ll~~~eG~~------------d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~m------------- 67 (404)
T KOG1409|consen 15 ELLSKIEGSQ------------DDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYM------------- 67 (404)
T ss_pred hhhhhhcCch------------hhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhC-------------
Confidence 4566677887 7788887776544 58999999999999543 333222111111
Q ss_pred cccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE
Q 012535 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (461)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (461)
...+.++.+.++...+ +.|-..|.+.-+. +...- ......+.+ ..|...+..+-|+...+.++
T Consensus 68 -P~~~~~~~y~~e~~~L------------~vg~~ngtvtefs-~sedf--nkm~~~r~~-~~h~~~v~~~if~~~~e~V~ 130 (404)
T KOG1409|consen 68 -PSPCSAMEYVSESRRL------------YVGQDNGTVTEFA-LSEDF--NKMTFLKDY-LAHQARVSAIVFSLTHEWVL 130 (404)
T ss_pred -CCCceEeeeeccceEE------------EEEEecceEEEEE-hhhhh--hhcchhhhh-hhhhcceeeEEecCCceeEE
Confidence 1112256777777764 8888888888776 32111 111122333 68889999999998888888
Q ss_pred Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
+. .|..+. |..........-. .+ ....+++.+.- .+...|...|.|.+-.+....
T Consensus 131 s~~~dk~~~-~hc~e~~~~lg~Y-----~~---~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~------------ 186 (404)
T KOG1409|consen 131 STGKDKQFA-WHCTESGNRLGGY-----NF---ETPASALQFDA---LYAFVGDHSGQITMLKLEQNG------------ 186 (404)
T ss_pred EeccccceE-EEeeccCCcccce-----Ee---eccCCCCceee---EEEEecccccceEEEEEeecC------------
Confidence 87 566554 4433222111000 00 00001111110 022233334444333332211
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
......+.+|.+.+.+++|.+..+.|.+|. |..+.+||+.-.......+.+|...+. .+..-
T Consensus 187 --~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~---------------~l~~~ 249 (404)
T KOG1409|consen 187 --CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ---------------ALSYA 249 (404)
T ss_pred --CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh---------------hhhhh
Confidence 112233455668999999999999999975 699999999754455667778877664 45555
Q ss_pred cCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 408 GDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+--+.|.+++.||.|.+|+.+....+
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hhheeeeeccCCCeEEEEeccceeec
Confidence 55678999999999999999876544
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=4.3e-08 Score=81.46 Aligned_cols=148 Identities=12% Similarity=0.086 Sum_probs=86.9
Q ss_pred CCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC--CEE
Q 012535 279 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHI 356 (461)
Q Consensus 279 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g--~~l 356 (461)
..|.-.++++.|+.+. ..+++ ..|=.|.+|++.-...+-. +..++.+. ..+...-|++..|+|.. -++
T Consensus 169 NaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFn-IVDiKP~n-------meeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 169 NAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFN-IVDIKPHN-------MEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred ccceeEeeeeeecCch-heeee-ccceeeeeccccccCCceE-EEeccCcc-------HHHHHHHHhhcccCHhHcceEE
Confidence 4588889999999986 55554 5677899998865432111 11111111 11112458889999943 344
Q ss_pred EEecCCeEEEEEccCCCCC---eeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 357 LSRDYMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 357 ~s~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.+.+.|.|++-|++...-+ ...+......+ ..-.-...+..|.++.|+++|+++++-+. -+|+|||+...+..
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v---~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGV---DVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcc---cchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 4556799999999841111 11111100000 00001112223458999999999998776 58999999987665
Q ss_pred ceeeccC
Q 012535 434 STTLEAS 440 (461)
Q Consensus 434 ~~~~~~~ 440 (461)
..+...|
T Consensus 315 ikTi~~h 321 (460)
T COG5170 315 IKTIPMH 321 (460)
T ss_pred ceeechH
Confidence 5555444
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=9.5e-08 Score=88.24 Aligned_cols=248 Identities=11% Similarity=0.110 Sum_probs=147.5
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeee-------ecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW-------NVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
...+|+.|+ .+..++++|+.||.+++..+.+...-..... .....-..++++|. .+.|..+.+-
T Consensus 15 vkL~c~~WN--ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~-------vvTWNe~~QK 85 (1189)
T KOG2041|consen 15 VKLHCAEWN--KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVM-------VVTWNENNQK 85 (1189)
T ss_pred ceEEEEEEc--ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEE-------EEEecccccc
Confidence 458999999 4566999999999999998875421111110 00001111223333 3445444443
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~ 264 (461)
+-+...+|.|.+|- +....-.... ......+-|.+++|+.+|..++.. .||.|.+=.++ +
T Consensus 86 ------------LTtSDt~GlIiVWm-lykgsW~EEM-----iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-G 146 (1189)
T KOG2041|consen 86 ------------LTTSDTSGLIIVWM-LYKGSWCEEM-----INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-G 146 (1189)
T ss_pred ------------ccccCCCceEEEEe-eecccHHHHH-----hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-c
Confidence 58889999999998 4332211110 013344678999999999999999 89999888777 3
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
...+.. .+++ .....+.|++|. ..++.+-.+|.+.+||....-.. .++....-.-...++.....|
T Consensus 147 NRIwgK------eLkg--~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~-----Kl~~~c~Vn~tg~~s~~~~ki 212 (1189)
T KOG2041|consen 147 NRIWGK------ELKG--QLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFER-----KLEKDCEVNGTGIFSNFPTKI 212 (1189)
T ss_pred ceecch------hcch--heccceeecccH-HHHHhhhcCCcEEEecccccHHH-----hhhhceEEeeeeeecCCCccc
Confidence 333211 1222 234578999998 88888889999999998654221 111000000000011111224
Q ss_pred eEEEEc--------cCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEE
Q 012535 345 SDIKFA--------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (461)
Q Consensus 345 ~~l~~s--------~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (461)
..+.|. ||-..|+.+-+ |.+.|..-.++..++-.-.+- .+....|+++|.+|+.
T Consensus 213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm-----------------~~vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM-----------------KIVGAKWNHNGAVLAV 275 (1189)
T ss_pred cceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc-----------------EeecceecCCCcEEEE
Confidence 444443 46667777654 888887766544444332221 1248899999999999
Q ss_pred ecCC
Q 012535 416 GSYS 419 (461)
Q Consensus 416 ~~~d 419 (461)
++.|
T Consensus 276 cG~~ 279 (1189)
T KOG2041|consen 276 CGND 279 (1189)
T ss_pred ccCc
Confidence 8854
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.1e-08 Score=91.46 Aligned_cols=173 Identities=20% Similarity=0.233 Sum_probs=104.7
Q ss_pred eeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec
Q 012535 224 CRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (461)
Q Consensus 224 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 303 (461)
|+.++ ..|..+|.++.|-.+.+.++++ ||.|.+||.-.+....++.+. .-.+..+.|.++.- -+..-+++.++.
T Consensus 776 CQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~n-v~~~iliAgcsa 849 (1034)
T KOG4190|consen 776 CQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLEN-VDRHILIAGCSA 849 (1034)
T ss_pred eeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCCCceeEeccc-Ccchheeeeccc
Confidence 44444 7899999999999888887765 577999998755544332111 11122233333322 123134444578
Q ss_pred CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec
Q 012535 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
..+|+++|.+..... ..++.-+.+. -..-+.+++..+.|++++++- .|.|.+.|.++ ++.+..++.-
T Consensus 850 eSTVKl~DaRsce~~----~E~kVcna~~-------Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpm 917 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWT----CELKVCNAPG-------PNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPM 917 (1034)
T ss_pred hhhheeeecccccce----eeEEeccCCC-------CchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcc
Confidence 899999999987642 2222111110 115688999999999999984 69999999996 7666544322
Q ss_pred cCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE-EecCCC
Q 012535 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV-FGCSEG 430 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i-w~~~~~ 430 (461)
+-.. ..++ .|..+.|+....|..+.+ |..-.+
T Consensus 918 ecdl---------------lqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 918 ECDL---------------LQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred cchh---------------hhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 2110 0121 244556666666677776 765544
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=2.4e-07 Score=75.15 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=108.7
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCC------CeEEEEEccCCCCceeee
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD------LRINLWNLEISNQSFNIV 271 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d------~~i~iwd~~~~~~~~~~~ 271 (461)
++++..||.+.+++ ... .....+.....| ..-.+.+....++.+.++.- +..+.|+++..+....
T Consensus 104 V~~~~~dg~~~v~s-~~~-----~~~~~~~i~~~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~-- 174 (319)
T KOG4714|consen 104 VCIGYADGSLAVFS-TDK-----DLALMSRIPSIH-SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP-- 174 (319)
T ss_pred eEecCCCceEEEEe-chH-----HHhhhhhccccc-ccccccceeecccEEecCCcceEeeccceeeecccccccccc--
Confidence 38889999999887 221 111111110111 11223334445666655432 3345565553222211
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
... ....|.+++-+|....++++|+.||.+-+||.++.... ...+.. |..++..+.|+|
T Consensus 175 -----~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~a------------hk~~i~eV~FHp 233 (319)
T KOG4714|consen 175 -----SKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKA------------HKAEIWEVHFHP 233 (319)
T ss_pred -----ccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHH------------hhhhhhheeccC
Confidence 111 22348999999987688899999999999999986431 334444 448899999999
Q ss_pred -CCCEEEEec-CCeEEEEEccCCCCCeeEE---eeccCccccccccccCCCccc---e------eeE---EEecCCCEEE
Q 012535 352 -NGRHILSRD-YMTLKLWDINMDSGPVATF---QVHEHLRPKLCDLYENDSIFD---K------FEC---CLSGDGGRVA 414 (461)
Q Consensus 352 -~g~~l~s~~-d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---v------~~~---~~s~~~~~l~ 414 (461)
++..|++++ ||.+.-||..+ ..+..- ..+..+. ..+.+.+ | ... .|.--|..|+
T Consensus 234 k~p~~Lft~sedGslw~wdas~--~~l~i~~~~s~~s~WL-------sgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lV 304 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST--TFLSISNQASVISSWL-------SGDPVKSRIEITSLLPSRSLSINSFDVLGPCLV 304 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC--ceEEecCccccccccc-------cCCcccceEeeeccccccceeeeeeeccCceEE
Confidence 667777765 69999999873 322210 1111111 1111110 0 011 2334588899
Q ss_pred EecCCCeEEEEe
Q 012535 415 TGSYSNLFRVFG 426 (461)
Q Consensus 415 s~~~dg~i~iw~ 426 (461)
+|++-+.|++++
T Consensus 305 cgtd~eaIyl~~ 316 (319)
T KOG4714|consen 305 CGTDAEAIYLTR 316 (319)
T ss_pred eccccceEEEec
Confidence 999999999875
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=1.7e-08 Score=93.35 Aligned_cols=164 Identities=16% Similarity=0.255 Sum_probs=119.6
Q ss_pred cceeeEEeCCC---CCEEEEeCCCeEEEEEccCCC-CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEE
Q 012535 234 YHINSISNNSD---GETFISADDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (461)
Q Consensus 234 ~~v~~i~~~~~---~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 309 (461)
-.|-.+.|+|. ...+++.+...-.+|++.... ..+.+ -+.+|...|+.+.|+|+.+..+++++.|-.+..
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~ 141 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHA 141 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeecccccccee
Confidence 34667778876 334555566667789886432 23333 367899999999999999899999999999999
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEcc-CCCEEEEecCCeEEEEEccCCCCCeeEEeeccCcccc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPK 388 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 388 (461)
||+++...- ++.+..-. ..-..++|+. ++..||+...+.|++||++.++.++..+++|...++
T Consensus 142 wd~rSp~~p---~ys~~~w~------------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn- 205 (1081)
T KOG0309|consen 142 WDMRSPHRP---FYSTSSWR------------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN- 205 (1081)
T ss_pred eeccCCCcc---eeeeeccc------------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee-
Confidence 999986531 33332221 4567789987 566666666689999999988899999999776653
Q ss_pred ccccccCCCccceeeEEEecC-CCEEEEecCCCeEEEEecCCCCcc
Q 012535 389 LCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.+.|..- ...+.+.+.||+|++||......+
T Consensus 206 --------------~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 206 --------------SIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred --------------hHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 5555432 346788899999999999876544
No 288
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.7e-06 Score=77.82 Aligned_cols=114 Identities=10% Similarity=0.277 Sum_probs=75.6
Q ss_pred cceeeEEeCCCCCEEEE--e--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe---cCCe
Q 012535 234 YHINSISNNSDGETFIS--A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGS 306 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~--~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---~dg~ 306 (461)
..|...+|.|.|+.+++ | ...++.+|.+++......++ ..+. ....+.+.|+|.| ++++.+. ..|.
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV----k~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV----KELD--KKFANTVFWSPKG-RFVVVAALVSRRGD 518 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh----hhhc--ccccceEEEcCCC-cEEEEEEecccccc
Confidence 45778899999998875 4 36789999888533222221 1222 3556889999999 8777654 4688
Q ss_pred EEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-------CCeEEEEEcc
Q 012535 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDIN 370 (461)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-------d~~i~vwd~~ 370 (461)
+.++|+...... ......| ...+.+.|.|.|+|+++++ |..-++|+++
T Consensus 519 l~F~D~~~a~~k---~~~~~eh-------------~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 519 LEFYDTDYADLK---DTASPEH-------------FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eEEEecchhhhh---hccCccc-------------cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 999998753321 1111122 3467899999999999864 2445667665
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=2.4e-06 Score=79.13 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=62.1
Q ss_pred EEeCCCCCEEEEe--CC--CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---------C
Q 012535 239 ISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---------G 305 (461)
Q Consensus 239 i~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---------g 305 (461)
..|+|||+.|+-. .. ..|.+.|+.+++. .++ ...+. . ...|+|+| +.|+..... .
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-~rl------t~~g~--~--~~~~SPDG-~~Ia~~~~~~~~~~~~~~~ 349 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-EQV------VFHGK--N--NSSVSTYK-NYIVYSSRETNNEFGKNTF 349 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCe-EeC------ccCCC--c--CceECCCC-CEEEEEEcCCCcccCCCCc
Confidence 3578887766554 22 2577777764433 221 12111 1 24899999 666665543 3
Q ss_pred eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C---CeEEEEEccCCCCCeeEEee
Q 012535 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQV 381 (461)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~ 381 (461)
.|.+.|+.++.. +.+... .......|+|||+.|+-.. + ..+.+.++. +.....+..
T Consensus 350 ~I~v~d~~~g~~-----~~LT~~-------------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l~~ 409 (419)
T PRK04043 350 NLYLISTNSDYI-----RRLTAN-------------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN--YNKSFLFPL 409 (419)
T ss_pred EEEEEECCCCCe-----EECCCC-------------CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC--CCeeEEeec
Confidence 678888877653 222211 1123478999999887643 2 345566664 554444443
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.81 E-value=1.1e-06 Score=77.59 Aligned_cols=145 Identities=16% Similarity=0.228 Sum_probs=107.9
Q ss_pred cccccceeeEEeCCCCCEEEEe-CCC-eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeE
Q 012535 230 HAHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 307 (461)
.+|...|.-..+..+++-++.| .|| .+-++|.++++.. .+++.-+.|.++..+|+| +.++.+-....|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence 4677788888888888888888 677 9999999865533 245567889999999999 899999999999
Q ss_pred EEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEe---cC--CeEEEEEccCCCCCeeEEeec
Q 012535 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY--MTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~---~d--~~i~vwd~~~~~~~~~~~~~~ 382 (461)
-++|+.++.. +..+..+. +-|+.+.|+|+++++|-+ +. ..|+++|+.. ++... .+..
T Consensus 426 ~vididngnv-----~~idkS~~-----------~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~-vTT~ 487 (668)
T COG4946 426 WVIDIDNGNV-----RLIDKSEY-----------GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYD-VTTP 487 (668)
T ss_pred EEEEecCCCe-----eEeccccc-----------ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEE-ecCC
Confidence 9999999874 33332221 569999999999999975 22 7899999984 44333 2222
Q ss_pred cCccccccccccCCCccceeeEEEecCCCEEEEec
Q 012535 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (461)
...- ++-+|.||+++|.--+
T Consensus 488 ta~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 488 TAYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccc---------------cCcccCCCCcEEEEEe
Confidence 2111 3778999999876544
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=7e-07 Score=83.46 Aligned_cols=84 Identities=12% Similarity=0.263 Sum_probs=64.6
Q ss_pred ccccceEEEEEcCC------------CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCC
Q 012535 33 QEVDIISAIEFDKS------------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (461)
Q Consensus 33 ~h~~~V~~~~~s~~------------g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (461)
.|...|+.+.|.|- .-.||+++..|.|.+||...+.. ...++.|.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----------------------~~~l~~~~ 109 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----------------------INWLSHSN 109 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----------------------hhhhcCCC
Confidence 57899999999872 12688899999999999877653 34566666
Q ss_pred cchhhccccccccceEEEEEeecCCC--cEEEEEeCCCeEEEEEccCCceeEE
Q 012535 101 PEFDYLKSLEIEEKINKIRWCQSANS--ALYLLSTNDKTIKLWKVQEKKVKKV 151 (461)
Q Consensus 101 ~~~~~~~~~~~~~~v~~v~~~p~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~ 151 (461)
.++..++|.|..+. ..|++-....++.+|+..+|+....
T Consensus 110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence 77999999985543 3566668889999999998875443
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.8e-08 Score=88.10 Aligned_cols=255 Identities=15% Similarity=0.192 Sum_probs=153.9
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...+|+..|..++--.+.+-+++++.|.+|++|.+....... ....+.-+++.|+
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~----------------~tsaCQfTY~aHk--------- 784 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI----------------GTSACQFTYQAHK--------- 784 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc----------------ccceeeeEhhhcc---------
Confidence 356799999998877788899999999999999987532110 0112445678888
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
.+|+.+-|. .+. -..++.||.|.+||.--++..... .+.|.
T Consensus 785 ---k~i~~igfL--~~l--r~i~ScD~giHlWDPFigr~Laq~-------------------------~dapk------- 825 (1034)
T KOG4190|consen 785 ---KPIHDIGFL--ADL--RSIASCDGGIHLWDPFIGRLLAQM-------------------------EDAPK------- 825 (1034)
T ss_pred ---Ccccceeee--ecc--ceeeeccCcceeecccccchhHhh-------------------------hcCcc-------
Confidence 789999998 443 344567899999997554432210 11110
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 267 (461)
.+..+.|.++. +-+..+++++ ...+|+++|.+..+..
T Consensus 826 ----------------------------------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 826 ----------------------------------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred ----------------------------------------cCCCceeEecc-cCcchheeeeccchhhheeeecccccce
Confidence 11112233321 1133344444 5889999998865543
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
... +-..-.+.+..+++++..|.| +.++++-.+|.|.+.|.+++..+ ......+ .....+
T Consensus 865 ~E~---kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI----Nswrpme------------cdllql 924 (1034)
T KOG4190|consen 865 CEL---KVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI----NSWRPME------------CDLLQL 924 (1034)
T ss_pred eeE---EeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee----ccCCccc------------chhhhh
Confidence 322 111234556778999999999 99999999999999999999863 2222211 122222
Q ss_pred EEccCCCEEEE-ecCCeEEE-EEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 348 KFARNGRHILS-RDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 348 ~~s~~g~~l~s-~~d~~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
+- |..+.|+. +.|.++.+ |..-. +......+....+.. -.-.-|.-|++....+.+.+|
T Consensus 925 aa-psdq~L~~saldHslaVnWhald-gimh~q~kpppepah-----------------flqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 925 AA-PSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEPAH-----------------FLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred cC-chhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcchh-----------------hhhccCceeEEeccCcEEEEE
Confidence 22 45566665 45777777 87653 333222222221110 011235567777777778887
Q ss_pred ecC
Q 012535 426 GCS 428 (461)
Q Consensus 426 ~~~ 428 (461)
.-.
T Consensus 986 ad~ 988 (1034)
T KOG4190|consen 986 ADS 988 (1034)
T ss_pred ecc
Confidence 543
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.78 E-value=1.5e-07 Score=76.29 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=62.0
Q ss_pred cceeeEEeCCCCCEEE-Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 234 YHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
..|.+++-+|..+.++ +| +||.+-+||.++...+.. .+..|+..++.+-|+|..+..|++++.||.+--||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 3488999999865555 55 799999999997644433 46779999999999999889999999999999999
Q ss_pred CCCc
Q 012535 312 MRQS 315 (461)
Q Consensus 312 ~~~~ 315 (461)
..+.
T Consensus 253 as~~ 256 (319)
T KOG4714|consen 253 ASTT 256 (319)
T ss_pred CCCc
Confidence 8753
No 294
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.75 E-value=3.2e-06 Score=78.26 Aligned_cols=226 Identities=11% Similarity=0.064 Sum_probs=118.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
+..++.++.++.|..||.++++.................. +... .++ . ++.+..++
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~----------sp~~-~~~-~------------v~~~~~~g 200 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA----------SPVI-ADG-G------------VLVGFAGG 200 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC----------CCEE-ECC-E------------EEEECCCC
Confidence 3477788889999999999887665544321100000000 0011 112 2 36667778
Q ss_pred cEEeeeeecccCccccceeeEeeecccc--cceeeEEeCC--CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCC
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHD--YHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 280 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (461)
.+..+| ..+.+..-. .......+.. .....+.-+| .+..+..+ .+|.+..||.++++..... ..
T Consensus 201 ~v~ald-~~tG~~~W~--~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~------~~-- 269 (377)
T TIGR03300 201 KLVALD-LQTGQPLWE--QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR------DA-- 269 (377)
T ss_pred EEEEEE-ccCCCEeee--eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee------cc--
Confidence 887777 322211100 0000000000 0000010011 13445555 7899999999877654432 11
Q ss_pred CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec
Q 012535 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (461)
Q Consensus 281 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~ 360 (461)
. ....... .+ ..+++++.||.+..+|..+++..++.. .+.. ........ .+.+|++++
T Consensus 270 -~-~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W~~~-~~~~--------------~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 270 -S-SYQGPAV--DD-NRLYVTDADGVVVALDRRSGSELWKND-ELKY--------------RQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred -C-CccCceE--eC-CEEEEECCCCeEEEEECCCCcEEEccc-cccC--------------CccccCEE--ECCEEEEEe
Confidence 1 1112222 34 577788899999999999887643210 1111 01111122 355677765
Q ss_pred -CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 361 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 361 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
+|.|+++|..+ ++.+..+..+..... .+..+. + ..|+.++.||.|+.|
T Consensus 328 ~~G~l~~~d~~t-G~~~~~~~~~~~~~~--------------~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSRED-GSFVARLKTDGSGIA--------------SPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECCC-CCEEEEEEcCCCccc--------------cCCEEE-C-CEEEEEeCCceEEEe
Confidence 69999999986 888887776553221 122233 3 357888899999876
No 295
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.75 E-value=9.9e-06 Score=75.00 Aligned_cols=277 Identities=11% Similarity=0.085 Sum_probs=146.7
Q ss_pred CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCC
Q 012535 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (461)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~ 125 (461)
.+..+++++.+|.|..+|..+++.. ....+...- ..... .+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~---------------------W~~~~~~~~--------------~~~p~----v~ 104 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL---------------------WRVDLDERL--------------SGGVG----AD 104 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe---------------------eeecCCCCc--------------ccceE----Ec
Confidence 3668889999999999998887642 111111100 11122 23
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
+..+++++.++.+..+|..+++.......... +.. .... .++ . ++.+..++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~~------~p~v-~~~-~------------v~v~~~~g 155 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE---------VLS------PPLV-ANG-L------------VVVRTNDG 155 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCce---------eec------CCEE-ECC-E------------EEEECCCC
Confidence 55888899999999999998887654432210 100 0011 122 2 36677788
Q ss_pred cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCC--
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-- 282 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-- 282 (461)
.+..+| ..+.+..-........ ...... .+.... +..++.+ .++.+..+|.++++........ ...+..
T Consensus 156 ~l~a~d-~~tG~~~W~~~~~~~~-~~~~~~-~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~---~~~g~~~~ 227 (377)
T TIGR03300 156 RLTALD-AATGERLWTYSRVTPA-LTLRGS-ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVA---LPKGRTEL 227 (377)
T ss_pred eEEEEE-cCCCceeeEEccCCCc-eeecCC-CCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccc---cCCCCCch
Confidence 899888 3322211110000000 000000 011111 2355666 7899999998877654321100 000000
Q ss_pred cc---e-EEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEE
Q 012535 283 EV---I-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 283 ~~---v-~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
.. + ....+ .+ ..+++++.+|.+..||..+++..+. .+.. ....... ++..++.
T Consensus 228 ~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~W~----~~~~--------------~~~~p~~--~~~~vyv 284 (377)
T TIGR03300 228 ERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVLWK----RDAS--------------SYQGPAV--DDNRLYV 284 (377)
T ss_pred hhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEEEe----eccC--------------CccCceE--eCCEEEE
Confidence 00 0 11112 23 5777788899999999998876432 1111 1111222 3455555
Q ss_pred e-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceee
Q 012535 359 R-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (461)
Q Consensus 359 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 437 (461)
+ .+|.+..+|..+ ++.+-.......... .+... .+..|++++.+|.|+++|..+++.. ..+
T Consensus 285 ~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~--------------ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~ 346 (377)
T TIGR03300 285 TDADGVVVALDRRS-GSELWKNDELKYRQL--------------TAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARL 346 (377)
T ss_pred ECCCCeEEEEECCC-CcEEEccccccCCcc--------------ccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEE
Confidence 4 469999999986 665433321111000 01122 3668889999999999999998765 344
Q ss_pred cc
Q 012535 438 EA 439 (461)
Q Consensus 438 ~~ 439 (461)
+.
T Consensus 347 ~~ 348 (377)
T TIGR03300 347 KT 348 (377)
T ss_pred Ec
Confidence 43
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=3e-06 Score=79.40 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=157.0
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
|...-.++.|+|.| ++|.|+.. .|.+-|..+-+ .+..+.-|. .
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-----------------------~iqsie~h~------------s 56 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-----------------------LIQSIELHQ------------S 56 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhh-----------------------hhhccccCc------------c
Confidence 33446789999988 88888866 67788866543 456677777 7
Q ss_pred ceEEEEEeecCC----------CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCC
Q 012535 114 KINKIRWCQSAN----------SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (461)
Q Consensus 114 ~v~~v~~~p~~~----------~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (461)
.|+.++|.|.+- .-+|+++...|.|.+||+..+..+.
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--------------------------------- 103 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--------------------------------- 103 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---------------------------------
Confidence 799999997432 1134444455666666654332111
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC---C-CEEEEe-CCCeEEE
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---G-ETFISA-DDLRINL 258 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~-~~l~~~-~d~~i~i 258 (461)
.+..|..++..++|-+. . ..|++- ....+.+
T Consensus 104 --------------------------------------------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvL 139 (1062)
T KOG1912|consen 104 --------------------------------------------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVL 139 (1062)
T ss_pred --------------------------------------------hhcCCCcchhheeeeeccCcchheeEEecCCcEEEE
Confidence 12455666777777553 3 334443 6889999
Q ss_pred EEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccc---cccCCCc--
Q 012535 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE---EQEAPGT-- 333 (461)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~-- 333 (461)
|+..+++...+ .........|+.+.|-..+.+..-+..|.+.+-+.-....-....+.+. .+.++..
T Consensus 140 wntdtG~k~Wk--------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 140 WNTDTGEKFWK--------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred EEccCCceeec--------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 99998876653 2233456678999998778888888888877776543221111111111 1111000
Q ss_pred cccccc--c---------ccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccce
Q 012535 334 RSFFTE--I---------IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (461)
Q Consensus 334 ~~~~~~--h---------~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (461)
+...++ + .-....++|+|.-+.++-.. -..+.++|++. ..++....-..+.+.
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak-------------- 276 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK-------------- 276 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc--------------
Confidence 000000 0 01133567788655444333 47899999986 677777665555432
Q ss_pred eeEEEecCC--CEEEEecCCCeEEEEecCC
Q 012535 402 FECCLSGDG--GRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 402 ~~~~~s~~~--~~l~s~~~dg~i~iw~~~~ 429 (461)
-+.|-|++ ..|.+.-.||.+.+|--+.
T Consensus 277 -fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 277 -FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 46677765 4799999999999998765
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=3.8e-05 Score=66.37 Aligned_cols=226 Identities=13% Similarity=0.086 Sum_probs=132.1
Q ss_pred EEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEE
Q 012535 40 AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (461)
Q Consensus 40 ~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (461)
+++|.+ ++.++++--..+.|..|+..++... .+.. .....+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------------------------~~~~--------------~~~~G~ 45 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE------------------------VIDL--------------PGPNGM 45 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE------------------------EEES--------------SSEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE------------------------EEec--------------CCCceE
Confidence 578888 7777777768899999998776421 1111 125677
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCcc
Q 012535 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (461)
Q Consensus 119 ~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (461)
++.. ++ ..++++...+ +.++|..+++...+........ ....++.+++.|+|...
T Consensus 46 ~~~~-~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~----------~~~~~ND~~vd~~G~ly------------ 100 (246)
T PF08450_consen 46 AFDR-PD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGV----------PFNRPNDVAVDPDGNLY------------ 100 (246)
T ss_dssp EEEC-TT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCS----------CTEEEEEEEE-TTS-EE------------
T ss_pred EEEc-cC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCc----------ccCCCceEEEcCCCCEE------------
Confidence 7762 23 4666666655 4555999887776666531100 01122367888888852
Q ss_pred ccccCC--------CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCce
Q 012535 199 FPPGGV--------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSF 268 (461)
Q Consensus 199 ~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~ 268 (461)
++.... |.|..++ .+. . .... ...-...+.|+|+|+++.|..+ ..+.|..+++.......
T Consensus 101 ~t~~~~~~~~~~~~g~v~~~~----~~~-~---~~~~--~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 101 VTDSGGGGASGIDPGSVYRID----PDG-K---VTVV--ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL 170 (246)
T ss_dssp EEEECCBCTTCGGSEEEEEEE----TTS-E---EEEE--EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred EEecCCCccccccccceEEEC----CCC-e---EEEE--ecCcccccceEECCcchheeecccccceeEEEeccccccce
Confidence 322211 3444444 111 1 1111 1223557899999999988766 58889999987444311
Q ss_pred e-eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 269 N-IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 269 ~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
. ...+ ..+....+..-.+++..+| ++.++....+.|.++|.+ ++. +..+.... ..++++
T Consensus 171 ~~~~~~--~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~----~~~i~~p~------------~~~t~~ 230 (246)
T PF08450_consen 171 SNRRVF--IDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKL----LREIELPV------------PRPTNC 230 (246)
T ss_dssp EEEEEE--EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCE----EEEEE-SS------------SSEEEE
T ss_pred eeeeeE--EEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccE----EEEEcCCC------------CCEEEE
Confidence 1 0000 0122233457889999999 888887889999999988 554 33333332 358999
Q ss_pred EEc-cCCCEEEE
Q 012535 348 KFA-RNGRHILS 358 (461)
Q Consensus 348 ~~s-~~g~~l~s 358 (461)
+|. ++.+.|+.
T Consensus 231 ~fgg~~~~~L~v 242 (246)
T PF08450_consen 231 AFGGPDGKTLYV 242 (246)
T ss_dssp EEESTTSSEEEE
T ss_pred EEECCCCCEEEE
Confidence 994 56555553
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=4.2e-06 Score=69.45 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=32.7
Q ss_pred CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 281 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
..+.|..+..+|+| .+||+...+|.|.+|++.+-+.
T Consensus 228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 46789999999999 9999999999999999988654
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=5.1e-08 Score=56.79 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=31.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEE
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (461)
...|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 347999999999999999999999999999997
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=6e-08 Score=91.69 Aligned_cols=221 Identities=15% Similarity=0.227 Sum_probs=137.2
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
.-.|+..-+|++|+-+.++|++|+..|.|++|++.+|.. .....+|.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~---------- 1143 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQ---------- 1143 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------------cccccccc----------
Confidence 345778999999999999999999999999999998864 34567787
Q ss_pred cccceEEEEEeecCCCcEEEEEe-CCC-eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 111 IEEKINKIRWCQSANSALYLLST-NDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~-~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
.+|+.+.=+ .+|...++.+ ... -..+|++..- ........... ++.|+.....
T Consensus 1144 --SavT~vePs--~dgs~~Ltsss~S~PlsaLW~~~s~-~~~~Hsf~ed~-----------------~vkFsn~~q~--- 1198 (1516)
T KOG1832|consen 1144 --SAVTLVEPS--VDGSTQLTSSSSSSPLSALWDASST-GGPRHSFDEDK-----------------AVKFSNSLQF--- 1198 (1516)
T ss_pred --ccccccccc--CCcceeeeeccccCchHHHhccccc-cCccccccccc-----------------eeehhhhHHH---
Confidence 788888766 6677777654 333 5789998641 11111111100 4455544333
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCce
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 268 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~ 268 (461)
-+.|+......+|| +........ .... ..+....-++..|+|+..+++ .|| .+||++..+...
T Consensus 1199 ---------r~~gt~~d~a~~YD-vqT~~~l~t--ylt~-~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1199 ---------RALGTEADDALLYD-VQTCSPLQT--YLTD-TVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIH 1261 (1516)
T ss_pred ---------HHhcccccceEEEe-cccCcHHHH--hcCc-chhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHh
Confidence 26777778899999 433221100 0000 012223336788999987765 445 369998654332
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
. +..... -..-.|+|.| ..++.-+ .|||+++-++ +++...- .-..+.
T Consensus 1262 ~--------FD~ft~-~~~G~FHP~g-~eVIINS-----EIwD~RTF~l----Lh~VP~L--------------dqc~Vt 1308 (1516)
T KOG1832|consen 1262 R--------FDQFTD-YGGGGFHPSG-NEVIINS-----EIWDMRTFKL----LHSVPSL--------------DQCAVT 1308 (1516)
T ss_pred h--------hhhhee-cccccccCCC-ceEEeec-----hhhhhHHHHH----HhcCccc--------------cceEEE
Confidence 2 222221 1234699999 7776654 5899998765 3433322 245678
Q ss_pred EccCCCEEEEe
Q 012535 349 FARNGRHILSR 359 (461)
Q Consensus 349 ~s~~g~~l~s~ 359 (461)
|+..|..+++.
T Consensus 1309 FNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1309 FNSTGDVMYAM 1319 (1516)
T ss_pred eccCccchhhh
Confidence 88888777653
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=78.57 Aligned_cols=159 Identities=9% Similarity=0.109 Sum_probs=104.9
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCcc
Q 012535 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (461)
Q Consensus 119 ~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (461)
+|+-..-+-. ++.+.+-.|-+-|++++....... .+.|. ++.|...+..+
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~s----------ksDVf-------AlQf~~s~nLv------------ 267 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQS----------KSDVF-------ALQFAGSDNLV------------ 267 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccccccc----------chhHH-------HHHhcccCCee------------
Confidence 6663222323 556677778888888775443322 23344 56666666664
Q ss_pred ccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCC
Q 012535 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (461)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (461)
+.|+.+|.|..+| ++...........+ -.|...|+++..-. ++++|+++ -+|+|.+||++..+....+ .
T Consensus 268 ~~GcRngeI~~iD-LR~rnqG~~~~a~r---lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V-----~ 338 (425)
T KOG2695|consen 268 FNGCRNGEIFVID-LRCRNQGNGWCAQR---LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSV-----M 338 (425)
T ss_pred EecccCCcEEEEE-eeecccCCCcceEE---EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccce-----e
Confidence 9999999999999 65543322222222 35788899988666 67777776 6999999999965543222 2
Q ss_pred CCCCCCcceEEE--EEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 277 NMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 277 ~~~~~~~~v~~v--~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
..++|-..-.-+ ...+.. ..+++++.|...|||.++.+.+
T Consensus 339 qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 339 QYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred eeeccccccccccccccccc-ceEEEccCeeEEEEEecccCce
Confidence 466665433333 334554 6888899999999999999887
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=4e-05 Score=66.22 Aligned_cols=225 Identities=11% Similarity=0.103 Sum_probs=129.2
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceee-cCCCcccccccCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERNFGCAS 194 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 194 (461)
.++.|.+ .++.++++-...+.|..|+..+++........ . .++++. +++..
T Consensus 3 Egp~~d~-~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-----------~-------~G~~~~~~~g~l--------- 54 (246)
T PF08450_consen 3 EGPVWDP-RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-----------P-------NGMAFDRPDGRL--------- 54 (246)
T ss_dssp EEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEEESSS-----------E-------EEEEEECTTSEE---------
T ss_pred cceEEEC-CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-----------C-------ceEEEEccCCEE---------
Confidence 3567874 25667777678899999999887654322111 1 156676 56553
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecc-cccceeeEEeCCCCCEEEEe-CC--------CeEEEEEccCC
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DD--------LRINLWNLEIS 264 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~d--------~~i~iwd~~~~ 264 (461)
+.+... .+.++| . ............... .....+++++.++|++.++. .. |.|..++.. +
T Consensus 55 ----~v~~~~-~~~~~d-~---~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~ 124 (246)
T PF08450_consen 55 ----YVADSG-GIAVVD-P---DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G 124 (246)
T ss_dssp ----EEEETT-CEEEEE-T---TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S
T ss_pred ----EEEEcC-ceEEEe-c---CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C
Confidence 444443 444446 2 222111111111112 44678899999999988774 22 456666655 2
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeE-EEEecCCeEEEEECCCccccccccccc-ccccCCCcccccccccc
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLF-EEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~ 342 (461)
+ ... +...-...+.++|+|++ +.| ++-+..+.|..+++............+ ..... .+
T Consensus 125 ~-~~~--------~~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~g 184 (246)
T PF08450_consen 125 K-VTV--------VADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG----------PG 184 (246)
T ss_dssp E-EEE--------EEEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS----------SC
T ss_pred e-EEE--------EecCcccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEEcCCC----------Cc
Confidence 2 211 11134456899999999 655 566778889999986432200001112 11110 03
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe-cCCCEEEE
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVAT 415 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 415 (461)
..-.+++..+|++.++.- .+.|.++|.+ ++.+..+....... ++++|. ++.+.|..
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEE
Confidence 478899999998877754 5899999986 78887777653322 489994 56555543
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=6.5e-05 Score=64.51 Aligned_cols=254 Identities=12% Similarity=0.103 Sum_probs=142.6
Q ss_pred ceEEEEEcC-CCCEEEEeecCCc-EEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 37 IISAIEFDK-SGDHLATGDRGGR-VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 37 ~V~~~~~s~-~g~~l~tg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
....++.+| .+..+|.+-.-|+ ..+||..+++....... ..-..|.+|.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---------------~~gRHFyGHg-------------- 56 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---------------PPGRHFYGHG-------------- 56 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---------------CCCCEEecCE--------------
Confidence 445788899 6667888887775 57899988764310000 0112355664
Q ss_pred eEEEEEeecCCCcEEEEE-----eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 115 INKIRWCQSANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
.|+ +||++|++. ...|.|-|||... ...++-+..... +- |=.+.+.|+|+.+.+-
T Consensus 57 ----~fs--~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~G--------IG-----PHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 57 ----VFS--PDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHG--------IG-----PHELLLMPDGETLVVA 116 (305)
T ss_pred ----EEc--CCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCC--------cC-----hhhEEEcCCCCEEEEE
Confidence 677 678898886 3568999999982 223332222111 00 0056778888665322
Q ss_pred ccCCCC------CccccccCCCcEEeeeeecccCccccceeeEeee--cccccceeeEEeCCCCCEEEEe-CCCe-----
Q 012535 190 FGCASN------DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA--HAHDYHINSISNNSDGETFISA-DDLR----- 255 (461)
Q Consensus 190 ~~~~~~------~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~-~d~~----- 255 (461)
...... ..|-....+.++...| . ..... ..+..+ .-|...++.+++.++|..++.. ..|.
T Consensus 117 NGGI~Thpd~GR~kLNl~tM~psL~~ld-~---~sG~l--l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~ 190 (305)
T PF07433_consen 117 NGGIETHPDSGRAKLNLDTMQPSLVYLD-A---RSGAL--LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAP 190 (305)
T ss_pred cCCCccCcccCceecChhhcCCceEEEe-c---CCCce--eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccC
Confidence 211111 1233333444444433 1 11111 111112 3466789999999999887765 3222
Q ss_pred --EEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeE-EEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 256 --INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 256 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
|-+++.. + ....+.............+-+|++++++ .++ +++=..+.+.+||..+++. +.....
T Consensus 191 PLva~~~~g--~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~----~~~~~l----- 257 (305)
T PF07433_consen 191 PLVALHRRG--G-ALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGGRVAVWDAATGRL----LGSVPL----- 257 (305)
T ss_pred CeEEEEcCC--C-cceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCCEEEEEECCCCCE----eecccc-----
Confidence 3333322 2 1222222222234456889999999998 655 5555678899999999886 233332
Q ss_pred ccccccccccceeEEEEccCCCEEEEecCCeEEEEE
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD 368 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd 368 (461)
..+..++-.+++ ++++++.|.+...+
T Consensus 258 ---------~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 258 ---------PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred ---------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 247778877776 77776666644433
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=7.4e-08 Score=91.08 Aligned_cols=193 Identities=11% Similarity=0.157 Sum_probs=119.1
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
...+|++|+ .+.+.|++|+..|.|+++++.+|........|.. .+. .+.-+.+|...
T Consensus 1102 ~~fTc~afs--~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S--------avT-------~vePs~dgs~~------ 1158 (1516)
T KOG1832|consen 1102 ALFTCIAFS--GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS--------AVT-------LVEPSVDGSTQ------ 1158 (1516)
T ss_pred cceeeEEee--cCCceEEeeeccceEEEEEccCcccccccccccc--------ccc-------cccccCCccee------
Confidence 779999999 6677999999999999999999876555444422 222 33344455543
Q ss_pred CCCCcccc-ccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 193 ASNDSSFP-PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 193 ~~~~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
|.+ ........+|+ +.. .......| ..-.++.|+.....-+.| ......+||+.+...+...
T Consensus 1159 -----Ltsss~S~PlsaLW~-~~s-----~~~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1159 -----LTSSSSSSPLSALWD-ASS-----TGGPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred -----eeeccccCchHHHhc-ccc-----ccCccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 122 22233566777 322 12222222 234567888775544555 5566889999987665432
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
+. ...+....-++..|+|+. .+++ .|| .+||.+..+. ++.|..-. .-..-.|+
T Consensus 1223 lt----~~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~ft-------------~~~~G~FH 1275 (1516)
T KOG1832|consen 1223 LT----DTVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQFT-------------DYGGGGFH 1275 (1516)
T ss_pred cC----cchhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhhhe-------------eccccccc
Confidence 21 011122223788999997 6665 466 4799998765 55555432 12234689
Q ss_pred cCCCEEEEecCCeEEEEEccCCCCCe
Q 012535 351 RNGRHILSRDYMTLKLWDINMDSGPV 376 (461)
Q Consensus 351 ~~g~~l~s~~d~~i~vwd~~~~~~~~ 376 (461)
|.|.-++.-+. |||+++ -+.+
T Consensus 1276 P~g~eVIINSE----IwD~RT-F~lL 1296 (1516)
T KOG1832|consen 1276 PSGNEVIINSE----IWDMRT-FKLL 1296 (1516)
T ss_pred CCCceEEeech----hhhhHH-HHHH
Confidence 99988887665 899986 4443
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=8.8e-05 Score=63.72 Aligned_cols=243 Identities=12% Similarity=0.128 Sum_probs=139.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCC-eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
.....++.+|. ....++.+-.-| ...+||..+++.......... .-+.. --.|+++|+.+
T Consensus 5 ~RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g--------RHFyG-----Hg~fs~dG~~L----- 65 (305)
T PF07433_consen 5 ARGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG--------RHFYG-----HGVFSPDGRLL----- 65 (305)
T ss_pred ccccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC--------CEEec-----CEEEcCCCCEE-----
Confidence 44566777762 355666776665 467899998887665543211 11111 24789999985
Q ss_pred CCCCCcccc-----ccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCC--------CeEEE
Q 012535 192 CASNDSSFP-----PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD--------LRINL 258 (461)
Q Consensus 192 ~~~~~~~~~-----~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d--------~~i~i 258 (461)
++ ....|.|-+|| ... .......+ ..|.-....+.+.|+++.|+.+.. |.-++
T Consensus 66 -------ytTEnd~~~g~G~IgVyd-~~~-----~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL 131 (305)
T PF07433_consen 66 -------YTTENDYETGRGVIGVYD-AAR-----GYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL 131 (305)
T ss_pred -------EEeccccCCCcEEEEEEE-CcC-----CcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence 43 34568999999 331 11122222 566677788999999988887522 33332
Q ss_pred EEccCCCCceeeeccCC------CCC--CCCCcceEEEEEeCCCCCeEEEEecCCe-------EEEEECCCccccccccc
Q 012535 259 WNLEISNQSFNIVDVKP------ANM--EDLTEVITSAEFHPTHCNMLAYSSSKGS-------IRLIDMRQSALCDTHSK 323 (461)
Q Consensus 259 wd~~~~~~~~~~~~~~~------~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~ 323 (461)
++.+.+.....++... ..+ .-|...|+.+++.++| ..++..-..|. |-+++.... +.
T Consensus 132 -Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~------~~ 203 (305)
T PF07433_consen 132 -NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA------LR 203 (305)
T ss_pred -ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc------ce
Confidence 3333333333322111 123 3367789999999998 44444333331 233332221 11
Q ss_pred ccccccCCCccccccccccceeEEEEccCCCEEEEec-C-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccce
Q 012535 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (461)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (461)
.+... ......-.+.+-+|+++++|.++++++ . +.+.+||..+ ++.+....-...
T Consensus 204 ~~~~p-----~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~----------------- 260 (305)
T PF07433_consen 204 LLPAP-----EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA----------------- 260 (305)
T ss_pred eccCC-----hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------
Confidence 11111 011122236799999999999998776 4 9999999986 776655543332
Q ss_pred eeEEEecCCCEEEEecCCCe
Q 012535 402 FECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~ 421 (461)
..++-.+++ ++++.+. |.
T Consensus 261 cGva~~~~~-f~~ssG~-G~ 278 (305)
T PF07433_consen 261 CGVAPTDDG-FLVSSGQ-GQ 278 (305)
T ss_pred eeeeecCCc-eEEeCCC-cc
Confidence 255555555 6666554 44
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=1.4e-07 Score=54.94 Aligned_cols=38 Identities=32% Similarity=0.332 Sum_probs=34.1
Q ss_pred CCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+++..+.+|...+ .+++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i---------------~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSI---------------NSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSE---------------EEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcE---------------EEEEEecccccceeeCCCCEEEEEC
Confidence 4567888898876 4999999999999999999999997
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=6.9e-06 Score=76.13 Aligned_cols=155 Identities=11% Similarity=0.074 Sum_probs=94.8
Q ss_pred ceeeEEeCCCCCE-EEE-e-C--CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC--CeE
Q 012535 235 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI 307 (461)
Q Consensus 235 ~v~~i~~~~~~~~-l~~-~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--g~i 307 (461)
......|+|+|+. ++. . . +..|.++|+.+++.. .+ ....+......|+|||.+++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~l--------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KI--------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EE--------ecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5668899999984 553 3 3 467888898755432 22 12344456778999994344444434 467
Q ss_pred EEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC----CeEEEEEccCCCCCeeEEeecc
Q 012535 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d----~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
.++|+.++.. ..+.... .......|+|||+.|+-.++ ..|+++|+.. ++. ..+....
T Consensus 260 y~~dl~~g~~-----~~LT~~~------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g 320 (419)
T PRK04043 260 YLYDTNTKTL-----TQITNYP------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG 320 (419)
T ss_pred EEEECCCCcE-----EEcccCC------------CccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence 8888877653 2222111 12234579999998886543 3677777764 333 2222111
Q ss_pred CccccccccccCCCccceeeEEEecCCCEEEEecCC---------CeEEEEecCCCCccc
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAES 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iw~~~~~~~~~ 434 (461)
.. ...|+|||++|+..+.. ..|++.|+.+++...
T Consensus 321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR 363 (419)
T ss_pred Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence 11 34799999988766543 378888998886543
No 308
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.53 E-value=2.9e-05 Score=70.78 Aligned_cols=282 Identities=15% Similarity=0.133 Sum_probs=136.2
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCC-Ccc-cccc---------cccc-----cccCCc----cccccccc
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQR-RDLE---------MMDY-----SMSRHP----EFRYKTEF 96 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~-~~~-~~~~---------~~~~-----~~~~~~----~~~~~~~~ 96 (461)
.|+.++|+++..-||+|...|.|.||.+...+..+ ... ..++ .... +....| .+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998899999999999999987665432 000 0000 0000 000011 11222222
Q ss_pred cCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCc
Q 012535 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (461)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (461)
+.. +++|++++.| |=.++++|..+|.+.|.|++...++.......+.........+. +
T Consensus 83 ~~~------------~g~vtal~~S---~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt-------~ 140 (395)
T PF08596_consen 83 DAK------------QGPVTALKNS---DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT-------S 140 (395)
T ss_dssp ---------------S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE-------E
T ss_pred ecc------------CCcEeEEecC---CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee-------E
Confidence 222 2789999997 33489999999999999998887766544332111111112222 3
Q ss_pred ceeec---CCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEE-eCCC--------
Q 012535 177 KSYMA---NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS-NNSD-------- 244 (461)
Q Consensus 177 ~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~-------- 244 (461)
+.|.. .+.. .+.-.+++|...|.+.+|.++-.............. ..+.+.|..|. ++.+
T Consensus 141 ieF~vm~~~~D~-------ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At 212 (395)
T PF08596_consen 141 IEFSVMTLGGDG-------YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALAT 212 (395)
T ss_dssp EEEEEEE-TTSS-------SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-B
T ss_pred EEEEEEecCCCc-------ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCc
Confidence 33431 1110 111236889999999999943222222222222222 24455555554 3221
Q ss_pred -------------CCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEe-----CCCCCeEEEEecCCe
Q 012535 245 -------------GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSSKGS 306 (461)
Q Consensus 245 -------------~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-----p~~~~~l~~~~~dg~ 306 (461)
..+++.+.+..++++...+.+...+. + ........+.+- ..+ ..|++-..+|.
T Consensus 213 ~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~ 283 (395)
T PF08596_consen 213 ISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGS 283 (395)
T ss_dssp HHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSE
T ss_pred hhHhhccccCCCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCc-eEEEEEECCCc
Confidence 12455557888999988766554432 2 122222334442 244 68888899999
Q ss_pred EEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEc
Q 012535 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (461)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~ 369 (461)
|++|.+-.-+.+ ..+...... ....+....++++|..++-.+...+.++.+
T Consensus 284 i~i~SLP~Lkei----~~~~l~~~~--------d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 284 IRIYSLPSLKEI----KSVSLPPPL--------DSRRLSSSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp EEEEETTT--EE----EEEE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred EEEEECCCchHh----hcccCCCcc--------ccccccccEECCCCCEEEEeCcccEEEEEE
Confidence 999999876542 222221100 013455677899999887765444444443
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.49 E-value=0.00011 Score=68.31 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=78.4
Q ss_pred CCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccc
Q 012535 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (461)
Q Consensus 245 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (461)
+..++.+.++.+..+|..+++...+. .+. ....+.. .+ ..++.++.+|.+..+|..+++..++.. .
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~------~~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~-~ 322 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKR------EYG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQS-D 322 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEee------cCC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEccc-c
Confidence 43344447899999999877655432 111 1112222 23 567778899999999999887643211 0
Q ss_pred cccccCCCccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceee
Q 012535 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (461)
+.. ....+.... ++ +|+.+ .+|.+.+.|..+ ++.+...+....... ..
T Consensus 323 ~~~--------------~~~~sp~v~-~g-~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------s~ 371 (394)
T PRK11138 323 LLH--------------RLLTAPVLY-NG-YLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------SE 371 (394)
T ss_pred cCC--------------CcccCCEEE-CC-EEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------eC
Confidence 110 011111121 44 45554 469999999986 777766654322111 01
Q ss_pred EEEecCCCEEEEecCCCeEEEEec
Q 012535 404 CCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
..+ .+..|+.++.||.|+.+++
T Consensus 372 P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE--ECCEEEEEeCCceEEEEeC
Confidence 122 2457888899999998865
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00011 Score=70.24 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=84.2
Q ss_pred ccceeeEEeCCCCCEEEEe-CCCeEEEEEccC--CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEE
Q 012535 233 DYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 309 (461)
..++.+++.+.+-+.+|.| .+|.|..+.-+- .+..... -.....++|+.+++..++ ..++....-..|.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~------~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD------YSHRGKEPITGLALRSDG-KSVLFVATTEQVML 197 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee------eeccCCCCceeeEEecCC-ceeEEEEecceeEE
Confidence 4677889999999999999 899999884321 1111111 122357889999999988 55344455667899
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEe-ecc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ-VHE 383 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~-~~~ 383 (461)
|.+..... ....+..+. .++.|..|++....++++....+.+|+... .++-..+. +|.
T Consensus 198 y~l~gr~p---~~~~ld~~G------------~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~k 256 (933)
T KOG2114|consen 198 YSLSGRTP---SLKVLDNNG------------ISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEK 256 (933)
T ss_pred EEecCCCc---ceeeeccCC------------ccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCe
Confidence 98874331 022333333 678899998755546666666899999874 44445555 444
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.4e-05 Score=75.49 Aligned_cols=193 Identities=13% Similarity=0.158 Sum_probs=120.2
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
.+...+.++|++++ +++|+-|+.+|.|++++..... .....|.
T Consensus 35 ~~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-------------------------~~~~~~s---------- 77 (846)
T KOG2066|consen 35 NFLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-------------------------KTNFDHS---------- 77 (846)
T ss_pred HHHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-------------------------ccccccc----------
Confidence 33456788888888 6789999999999999876431 1122232
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
.. ..+|.++++|+.||+|.|-.+-+.+.......
T Consensus 78 --~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df------------------------------------ 111 (846)
T KOG2066|consen 78 --SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF------------------------------------ 111 (846)
T ss_pred --cc--------ccCCceEEEecCCCcEEEeeccCCccceeEec------------------------------------
Confidence 11 25688999999999888877655543322221
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-----CCEEEEe-CCCeEEEEEccCC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----GETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~-~d~~i~iwd~~~~ 264 (461)
..++.+++++|+ .+.+++| .-| +.++..+-.
T Consensus 112 ------------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl 148 (846)
T KOG2066|consen 112 ------------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL 148 (846)
T ss_pred ------------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh
Confidence 245667777776 4556666 455 666654322
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
+....+ .+....++|.++.|. | +++|-+..+| |++||...++.+ ..++.+....... ..-
T Consensus 149 gnk~~v------~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l----~~i~~p~~~~R~e------~fp 208 (846)
T KOG2066|consen 149 GNKDSV------VLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRL----TNIPPPSQSVRPE------LFP 208 (846)
T ss_pred cCccce------eeecCccceEEEEec--C-cEEEEecCCC-cEEEecccccee----eccCCCCCCCCcc------cCC
Confidence 221111 244567899999998 4 7899888887 899999887652 2222221110001 234
Q ss_pred eEEEEccCCCEEEEecCCeEEEEEcc
Q 012535 345 SDIKFARNGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~d~~i~vwd~~ 370 (461)
..+.|.++. .|+.|-..+|+|..++
T Consensus 209 phl~W~~~~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQDED-RLVIGWGDSVKICSIK 233 (846)
T ss_pred CceEecCCC-eEEEecCCeEEEEEEe
Confidence 567888765 4555543478888887
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=3.4e-05 Score=73.55 Aligned_cols=209 Identities=9% Similarity=0.064 Sum_probs=123.2
Q ss_pred eeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccc-eeeEEeCCCCCEEEEe--CCC
Q 012535 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFISA--DDL 254 (461)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~--~d~ 254 (461)
++++.+..+ +.|+.+|.|.+++ ...+..+.+ .++... |..+-...+.++|++- +++
T Consensus 30 c~~s~~~~v------------vigt~~G~V~~Ln--------~s~~~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTGSV------------VIGTADGRVVILN--------SSFQLIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCceE------------EEeeccccEEEec--------ccceeeehh-eecchhhhhHhhcccCceEEEEEeecCC
Confidence 566666664 9999999999887 112222222 444444 4444334444566663 344
Q ss_pred ----eEEEEEccCCC-----CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccc
Q 012535 255 ----RINLWNLEISN-----QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 255 ----~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
.+++|+++..+ .+.....+-+...+....++.+++.+.+- +.+|+|-.+|.|..+.-.-.+.. ..+.-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDr--gsr~~ 165 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDR--GSRQD 165 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcc--cccee
Confidence 69999997542 12211111111223346778899999987 89999999999999853321110 01111
Q ss_pred ccccCCCccccccccccceeEEEEccCCCE-EEEecCCeEEEEEccCCCCC-eeEEeeccCccccccccccCCCccceee
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDYMTLKLWDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDKFE 403 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~-l~s~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (461)
-.+.. ..+|+++.+..+++- +.++.-..|.+|.+.. ..+ ...+..|+...+ +
T Consensus 166 ~~~~~----------~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~ln---------------C 219 (933)
T KOG2114|consen 166 YSHRG----------KEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLN---------------C 219 (933)
T ss_pred eeccC----------CCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCccce---------------e
Confidence 11111 168999999998877 5556667899999984 333 334555555442 6
Q ss_pred EEEecCCCEEEEecCCCeEEEEecCCCCccceeec
Q 012535 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (461)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 438 (461)
.++++....+++++. ..+++|+.+..+ ...+++
T Consensus 220 ss~~~~t~qfIca~~-e~l~fY~sd~~~-~cfaf~ 252 (933)
T KOG2114|consen 220 SSFSDGTYQFICAGS-EFLYFYDSDGRG-PCFAFE 252 (933)
T ss_pred eecCCCCccEEEecC-ceEEEEcCCCcc-eeeeec
Confidence 666655443555543 468888887443 324444
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2e-06 Score=75.37 Aligned_cols=213 Identities=16% Similarity=0.126 Sum_probs=132.3
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-CCeEEEEEccCCCCceeeecc
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~ 273 (461)
+++.+++.||.++.|. -... .-.+.... ...|...+.+++.+-++-++.+. . |..++++|+.+-...- .+
T Consensus 21 ~fiiqASlDGh~KFWk-Ks~i---sGvEfVKh-FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin-mi-- 92 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWK-KSRI---SGVEFVKH-FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN-MI-- 92 (558)
T ss_pred heEEeeecchhhhhcC-CCCc---cceeehhh-hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh-hc--
Confidence 4568999999999997 2111 11222222 37888999999999999999996 5 9999999998544321 11
Q ss_pred CCCCCCCCCcceEEEEEeCCCC-CeEE-EEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 274 KPANMEDLTEVITSAEFHPTHC-NMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 274 ~~~~~~~~~~~v~~v~~~p~~~-~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+.-.++.+..+ .+|... ..++ +...++.|.++|-+..... ...+. .-|..+|..+.+.+
T Consensus 93 ---KL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q---~~~fk-----------klH~sPV~~i~y~q 154 (558)
T KOG0882|consen 93 ---KLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ---DGYFK-----------KLHFSPVKKIRYNQ 154 (558)
T ss_pred ---ccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCc---cceec-----------ccccCceEEEEeec
Confidence 122222322222 233211 1333 3345788999998765421 11111 11447899999999
Q ss_pred CCCEEEEecC-CeEEEEEccCC-CC----CeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 352 NGRHILSRDY-MTLKLWDINMD-SG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 352 ~g~~l~s~~d-~~i~vwd~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
-+.-+++.+. |.|.-|....+ .. ....++ |+. .+-.+...+. ...++.|+|++..+.+-+.|..|+++
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K-~eT---dLy~f~K~Kt--~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK-HET---DLYGFPKAKT--EPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred cccceeeccccceeEeecCCCcccCcccccccccc-ccc---hhhccccccc--CccceEEccccCcccccCcccEEEEE
Confidence 9988888774 99999998620 11 111111 110 0111111111 12489999999999999999999999
Q ss_pred ecCCCCccceeeccC
Q 012535 426 GCSEGSAESTTLEAS 440 (461)
Q Consensus 426 ~~~~~~~~~~~~~~~ 440 (461)
++++|+..+..-|..
T Consensus 229 ~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVL 243 (558)
T ss_pred Eeccchhhhhhhccc
Confidence 999998775444433
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.41 E-value=0.00025 Score=70.54 Aligned_cols=242 Identities=14% Similarity=0.172 Sum_probs=132.5
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
+.|.++.|..++..++.+..+|.|.+-|..+... +..+.- ...|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------eivg~v-----------d~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------EIVGNV-----------DNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------eeeeec-----------cCce
Confidence 5899999999999999999999999998776542 222222 1679
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
.+++|+ +|+..++..+..+++.+-.-. -..+.......... ..+... .+-|-.....
T Consensus 113 ~aaswS--~Dee~l~liT~~~tll~mT~~-f~~i~E~~L~~d~~---~~sk~v-------~VGwGrkeTq---------- 169 (1265)
T KOG1920|consen 113 SAASWS--PDEELLALITGRQTLLFMTKD-FEPIAEKPLDADDE---RKSKFV-------NVGWGRKETQ---------- 169 (1265)
T ss_pred EEEeec--CCCcEEEEEeCCcEEEEEecc-ccchhccccccccc---cccccc-------eeccccccee----------
Confidence 999999 567799999988888765421 11111111100000 000000 1111111111
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-----CC-CeEEEEEccCCCCcee
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DD-LRINLWNLEISNQSFN 269 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----~d-~~i~iwd~~~~~~~~~ 269 (461)
+.| ..|.....+ .. ...+.... ..-+ ..=.+|.|--||+++++. .+ ..|++||.+ +. .-.
T Consensus 170 ---frg-s~gr~~~~~----~~--~~ek~~~~-~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns 235 (1265)
T KOG1920|consen 170 ---FRG-SEGRQAARQ----KI--EKEKALEQ-IEQD-DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNS 235 (1265)
T ss_pred ---eec-chhhhcccc----cc--cccccccc-hhhc-cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhc
Confidence 100 011111000 00 00000000 0111 122468999999999972 24 899999977 22 111
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe---cCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
.-+.....-.+++|-|.| .++++-. .|+.|.++.-+.-+. ......+.... ..|..
T Consensus 236 -------~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de------------~~ve~ 294 (1265)
T KOG1920|consen 236 -------TSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDE------------KEVEE 294 (1265)
T ss_pred -------ccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc-cccccCCcccc------------cchhe
Confidence 111123334689999998 7777653 355788887543221 11111122211 44899
Q ss_pred EEEccCCCEEEE---ecC-CeEEEEEccC
Q 012535 347 IKFARNGRHILS---RDY-MTLKLWDINM 371 (461)
Q Consensus 347 l~~s~~g~~l~s---~~d-~~i~vwd~~~ 371 (461)
++|+.++..|+. ... ..|++|-+.+
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecC
Confidence 999999999997 223 4599999875
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.41 E-value=0.0003 Score=60.50 Aligned_cols=230 Identities=14% Similarity=0.118 Sum_probs=119.2
Q ss_pred CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcc-eeecCCCcccccccCCCCCccccccCCCcEEeeeee
Q 012535 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK-SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV 213 (461)
Q Consensus 135 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~ 213 (461)
+|+|..||..+++........... .+ .+ ...+++..+ ++++.++.+..|| .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~-----~~----------~~~~~~~~~~~v------------~~~~~~~~l~~~d-~ 53 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI-----GG----------PVATAVPDGGRV------------YVASGDGNLYALD-A 53 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC-----SS----------EEETEEEETTEE------------EEEETTSEEEEEE-T
T ss_pred CCEEEEEECCCCCEEEEEECCCCC-----CC----------ccceEEEeCCEE------------EEEcCCCEEEEEE-C
Confidence 688999999888877665442100 00 11 122244443 6778999999988 3
Q ss_pred cccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCC-cceEEEEEeC
Q 012535 214 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHP 292 (461)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p 292 (461)
... +....+.. ...+.......++..++...++.+..+|..+++...+..... .+... .......+.
T Consensus 54 ~tG------~~~W~~~~--~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~- 121 (238)
T PF13360_consen 54 KTG------KVLWRFDL--PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAGVRSSSSPAVD- 121 (238)
T ss_dssp TTS------EEEEEEEC--SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCSTB--SEEEEE-
T ss_pred CCC------CEEEEeec--cccccceeeecccccccccceeeeEecccCCcceeeeecccc---ccccccccccCceEe-
Confidence 221 11111111 111111112223434444478899999988887766531110 01111 111223333
Q ss_pred CCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCe-EEEEEccC
Q 012535 293 THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT-LKLWDINM 371 (461)
Q Consensus 293 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~-i~vwd~~~ 371 (461)
+ ..++++..++.|..+|+++++..... .......... +. ....+..-....++..+++..++. +.+ |+.+
T Consensus 122 -~-~~~~~~~~~g~l~~~d~~tG~~~w~~--~~~~~~~~~~---~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 122 -G-DRLYVGTSSGKLVALDPKTGKLLWKY--PVGEPRGSSP---IS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp -T-TEEEEEETCSEEEEEETTTTEEEEEE--ESSTT-SS-----EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT
T ss_pred -c-CEEEEEeccCcEEEEecCCCcEEEEe--ecCCCCCCcc---ee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC
Confidence 5 67888888999999999999874332 1111110000 00 001122222223454444444664 555 9886
Q ss_pred CCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
++.+- +...... ......++..|+.++.++.|..||+++|+.
T Consensus 193 -g~~~w--~~~~~~~----------------~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 193 -GEKLW--SKPISGI----------------YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -TEEEE--EECSS-E----------------CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -CCEEE--EecCCCc----------------cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 55332 2221111 222456788888888999999999999964
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=3.4e-05 Score=72.98 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=116.5
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccC
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (461)
.+++.|+.+|.|.+++ . .... ... ..|... ..+|+++++| .||+|.|-.+-+.+.....
T Consensus 50 ~~~~~GtH~g~v~~~~-~---~~~~----~~~--~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~---- 109 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTT-C---QGNP----KTN--FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY---- 109 (846)
T ss_pred ceeeeccccceEEEEe-c---CCcc----ccc--cccccc------ccCCceEEEecCCCcEEEeeccCCccceeE----
Confidence 4568999999999887 2 1111 000 122221 5579999999 7999999988876655432
Q ss_pred CCCCCCCCcceEEEEEeCC----CCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 275 PANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 275 ~~~~~~~~~~v~~v~~~p~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
....++.+++++|+ .++.+++|+..| +.++.-+--.. ......+. -.++|.++.|.
T Consensus 110 -----df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn----k~~v~l~~----------~eG~I~~i~W~ 169 (846)
T KOG2066|consen 110 -----DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN----KDSVVLSE----------GEGPIHSIKWR 169 (846)
T ss_pred -----ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC----ccceeeec----------CccceEEEEec
Confidence 24567899999997 236899999998 77765332111 11111121 12789999996
Q ss_pred cCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 351 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 351 ~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
|.++|-++|--|+|||+.. .+.+..+......++. +.+. ..+.|.++.++++ |+..+|+|..++
T Consensus 170 --g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R~--e~fp-------phl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 --GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVRP--ELFP-------PHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred --CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCCc--ccCC-------CceEecCCCeEEE--ecCCeEEEEEEe
Confidence 7799989987899999986 6666555443322210 1111 2688987776665 344579999888
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.30 E-value=1.6e-06 Score=79.49 Aligned_cols=211 Identities=15% Similarity=0.219 Sum_probs=129.2
Q ss_pred cccceEEEEEcCCC--CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 34 EVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 34 h~~~V~~~~~s~~g--~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
....+.|+++.-+. ..+++|..+|.|.+-.+...... -.....+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------------s~E~tp~~a----------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------------SAEVTPGYA----------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------------cceeccccc-----------
Confidence 45568888887644 48999999999999887543210 011123333
Q ss_pred ccceEEEEEeecCCCcEEEEEe----CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 112 EEKINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
...++++|++- |...|++|- .|..+.|||+.++-... .....
T Consensus 103 -r~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwdi~s~ltvP-------------------------------ke~~~- 148 (783)
T KOG1008|consen 103 -RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWDINSLLTVP-------------------------------KESPL- 148 (783)
T ss_pred -ccccccccccc-cHHHHHhhhhhhcccCCccceecccccCCC-------------------------------ccccc-
Confidence 66899999963 555677762 56789999987653211 00000
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
+.++ ......+++|..+.+++.+| ....+.++|++....
T Consensus 149 -----------fs~~-----------------------------~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 149 -----------FSSS-----------------------------TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred -----------cccc-----------------------------cccCccccccccCcchhhcccccchhhhhhhhhhhh
Confidence 1110 11233478888888888999 788999999984332
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC-CCcccccccccccccccCCCcccccccccccee
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
.... -....+..+..+|-.+.++++-. ||.|.+||. ++-+ .++..+.....+.+ ..+.
T Consensus 189 ~~~s---------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie---npl~~i~~~~N~~~--------~~l~ 247 (783)
T KOG1008|consen 189 SVSS---------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE---NPLQIILRNENKKP--------KQLF 247 (783)
T ss_pred hhhh---------hhhhhcccceecCCCCCceeccc-cCceeeccchhhhc---cHHHHHhhCCCCcc--------ccee
Confidence 2111 13445677888884447777654 999999993 3322 22333332221111 3488
Q ss_pred EEEEccCCC-EEEE-ecC-CeEEEEEccC
Q 012535 346 DIKFARNGR-HILS-RDY-MTLKLWDINM 371 (461)
Q Consensus 346 ~l~~s~~g~-~l~s-~~d-~~i~vwd~~~ 371 (461)
.++|+|... .+++ .-| ++|++||+..
T Consensus 248 ~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 248 ALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eEEeccCCcchhhhhccCcceEEEecccc
Confidence 999999433 3333 335 9999999874
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=1.1e-05 Score=73.96 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=60.1
Q ss_pred CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec
Q 012535 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (461)
Q Consensus 281 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~ 360 (461)
....+.+++++|+. ..|+.|+.||.|.+||...+.. .+.... -..+.++|+|+|..+++|+
T Consensus 258 L~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t------~~~ka~------------~~P~~iaWHp~gai~~V~s 318 (545)
T PF11768_consen 258 LPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVT------LLAKAE------------FIPTLIAWHPDGAIFVVGS 318 (545)
T ss_pred cCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCee------eeeeec------------ccceEEEEcCCCcEEEEEc
Confidence 67889999999998 8999999999999999877642 111111 3478899999999999998
Q ss_pred C-CeEEEEEccC
Q 012535 361 Y-MTLKLWDINM 371 (461)
Q Consensus 361 d-~~i~vwd~~~ 371 (461)
+ |.+.+||+..
T Consensus 319 ~qGelQ~FD~AL 330 (545)
T PF11768_consen 319 EQGELQCFDMAL 330 (545)
T ss_pred CCceEEEEEeec
Confidence 7 9999999975
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=7e-05 Score=68.79 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=60.8
Q ss_pred cceeEEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCC
Q 012535 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (461)
..|.+++++|+...|+.| .||+|.+||... + +..+....-.. ..++|+|+|.++++|+..|
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P---------------~~iaWHp~gai~~V~s~qG 321 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAEFIP---------------TLIAWHPDGAIFVVGSEQG 321 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeecccc---------------eEEEEcCCCcEEEEEcCCc
Confidence 679999999998888876 589999999875 2 22222222111 4899999999999999999
Q ss_pred eEEEEecCCCCccceeeccC
Q 012535 421 LFRVFGCSEGSAESTTLEAS 440 (461)
Q Consensus 421 ~i~iw~~~~~~~~~~~~~~~ 440 (461)
.+.+||+.-+....+.+...
T Consensus 322 elQ~FD~ALspi~~qLlsEd 341 (545)
T PF11768_consen 322 ELQCFDMALSPIKMQLLSED 341 (545)
T ss_pred eEEEEEeecCccceeecccc
Confidence 99999998765444444333
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00038 Score=60.77 Aligned_cols=311 Identities=11% Similarity=0.110 Sum_probs=152.2
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
|...-.++.+++..++++.+. ...+.+-.-..++ ..+++.+.-+--.++++....+..|. .
T Consensus 134 h~qk~f~v~r~~gcrli~y~~-~~s~lv~sQks~q------a~lpGvGv~~l~~~~fkssq~lp~~g------------~ 194 (463)
T KOG1645|consen 134 HKQKSFSVGRNAGCRLIGYDE-SSSTLVVSQKSGQ------ALLPGVGVQKLESHDFKSSQILPGEG------------S 194 (463)
T ss_pred hcccceeeeecCCceEEeccc-ccceeeeeccchh------hcCCccceEEeccCCcchhhcccccc------------h
Confidence 555666777776554444433 3233332222211 12222222222223344444455555 6
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.|..++|+|... .++..++.+.+|+|.|+++.......... ..++ +.+|.-+...
T Consensus 195 ~IrdlafSp~~~-GLl~~asl~nkiki~dlet~~~vssy~a~---------~~~w-------SC~wDlde~h-------- 249 (463)
T KOG1645|consen 195 FIRDLAFSPFNE-GLLGLASLGNKIKIMDLETSCVVSSYIAY---------NQIW-------SCCWDLDERH-------- 249 (463)
T ss_pred hhhhhccCcccc-ceeeeeccCceEEEEecccceeeeheecc---------CCce-------eeeeccCCcc--------
Confidence 799999998543 37889999999999999987665544432 1233 4566666554
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeC------CCCCEEEEeCCCeEEEEEccCCCCc
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN------SDGETFISADDLRINLWNLEISNQS 267 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~------~~~~~l~~~~d~~i~iwd~~~~~~~ 267 (461)
+++.|..+|.|.+|| ++..+........ .-...+|..++.- +.+.+++... -.+..|+.......
T Consensus 250 ---~IYaGl~nG~VlvyD-~R~~~~~~~e~~a----~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 250 ---VIYAGLQNGMVLVYD-MRQPEGPLMELVA----NVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAEC 320 (463)
T ss_pred ---eeEEeccCceEEEEE-ccCCCchHhhhhh----hhccCcceeecccCccccccccceEEeee-hhhhhhhhhccccC
Confidence 368999999999999 6554442211100 1112344444322 2233333331 22455665533322
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCe---EE---E-EECCCcccccccccccccccCCCcccccccc
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS---IR---L-IDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~---i~---i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
...+ .-.+..+...++++++-...+|++.-.+.+ ++ . -|-+.+..+.....+.-+... ..+
T Consensus 321 ~p~v-----lele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~----~kl--- 388 (463)
T KOG1645|consen 321 LPCV-----LELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQ----TKL--- 388 (463)
T ss_pred CCcc-----cccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcc----ccc---
Confidence 2110 111235566677777755234444333210 11 0 011111110000001000000 000
Q ss_pred ccceeEEEEccCCCEEEE-ecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe-cC-CCEEEEe
Q 012535 341 IASISDIKFARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GD-GGRVATG 416 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s-~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~-~~~l~s~ 416 (461)
..-..+.=.++..+++. +++ +.+.+||..+ .+.++++.... ++ .+++.. -+ +.+|+.-
T Consensus 389 -~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s-~evvQ~l~~~e-pv---------------~Dicp~~~n~~syLa~L 450 (463)
T KOG1645|consen 389 -STTQAIRAVEDNNYIVVVGDSTNELILQDPHS-FEVVQTLALSE-PV---------------LDICPNDTNGSSYLALL 450 (463)
T ss_pred -ccccceeccccccEEEEecCCcceeEEeccch-hheeeecccCc-ce---------------eecceeecCCcchhhhe
Confidence 00111112245677776 445 9999999996 77777776542 22 244332 22 4466665
Q ss_pred cCCCeEEEEecC
Q 012535 417 SYSNLFRVFGCS 428 (461)
Q Consensus 417 ~~dg~i~iw~~~ 428 (461)
. |..++||..+
T Consensus 451 T-d~~v~Iyk~e 461 (463)
T KOG1645|consen 451 T-DDRVHIYKNE 461 (463)
T ss_pred e-cceEEEEecC
Confidence 5 5578888765
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=1.1e-06 Score=80.61 Aligned_cols=192 Identities=13% Similarity=0.126 Sum_probs=125.7
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEe-----CCCeEEEEEccCCCC-ceee
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-----DDLRINLWNLEISNQ-SFNI 270 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-----~d~~i~iwd~~~~~~-~~~~ 270 (461)
+++|..+|.|-+-. +...... ...+..++....++++|++- .+.||+| .|..+.|||+.+.-. +...
T Consensus 73 lavG~atG~I~l~s-~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~ 146 (783)
T KOG1008|consen 73 LAVGSATGNISLLS-VRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES 146 (783)
T ss_pred hhhccccCceEEee-cCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc
Confidence 68899999999876 3332221 12223677788899999874 6778877 278899999985421 1111
Q ss_pred eccCCCCCCC-CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 271 VDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 271 ~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
..+.+ ......+++|..+. +++.+|...+.+.++|+|..... ...+.. ..+..+..
T Consensus 147 -----~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~---~~svnT--------------k~vqG~tV 203 (783)
T KOG1008|consen 147 -----PLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDS---VSSVNT--------------KYVQGITV 203 (783)
T ss_pred -----cccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhh---hhhhhh--------------hhccccee
Confidence 11222 34455688999776 89999999999999999854321 111111 34777888
Q ss_pred cc-CCCEEEEecCCeEEEEE-ccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-EEEEec-CCCeEEEE
Q 012535 350 AR-NGRHILSRDYMTLKLWD-INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGS-YSNLFRVF 425 (461)
Q Consensus 350 s~-~g~~l~s~~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw 425 (461)
+| .+.|+++..||.|.+|| ..+...++..+........ ..++.++|.|... .|++.+ ..+.|+++
T Consensus 204 dp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~-----------~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 204 DPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKP-----------KQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred cCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcc-----------cceeeEEeccCCcchhhhhccCcceEEEe
Confidence 88 78899998899999999 4433445544443332211 1235899999743 455555 45789999
Q ss_pred ecCC
Q 012535 426 GCSE 429 (461)
Q Consensus 426 ~~~~ 429 (461)
++..
T Consensus 273 di~~ 276 (783)
T KOG1008|consen 273 DICV 276 (783)
T ss_pred cccc
Confidence 9864
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.16 E-value=0.001 Score=61.89 Aligned_cols=231 Identities=10% Similarity=0.059 Sum_probs=116.8
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
+..++.++.++.+.-+|.++++.......... +.. +... .++. ++.+..++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~s------sP~v-~~~~-------------v~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE---------ALS------RPVV-SDGL-------------VLVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc---------eec------CCEE-ECCE-------------EEEECCCC
Confidence 45788888999999999999887655443211 000 0011 1222 35566777
Q ss_pred cEEeeeeecccCccccceeeEeeeccccc----ceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCC
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDY----HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 280 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (461)
.+..+| ..+.+. ...+...... ...+.... ++ .++.+ .++.+..+|..+++...+.....+....
T Consensus 171 ~l~ald-~~tG~~------~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~- 240 (394)
T PRK11138 171 MLQALN-ESDGAV------KWTVNLDVPSLTLRGESAPATA-FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT- 240 (394)
T ss_pred EEEEEE-ccCCCE------eeeecCCCCcccccCCCCCEEE-CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCcc-
Confidence 777777 322211 1111000000 00011111 23 34445 7888988888877654432100000000
Q ss_pred CCcceEEEEEeC--CCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEE
Q 012535 281 LTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 281 ~~~~v~~v~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
.......+..+| .+ ..++.++.+|.+..+|..+++..++. .+. ....+.. ++..|+.
T Consensus 241 ~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~--~~~----------------~~~~~~~--~~~~vy~ 299 (394)
T PRK11138 241 EIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKR--EYG----------------SVNDFAV--DGGRIYL 299 (394)
T ss_pred chhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEee--cCC----------------CccCcEE--ECCEEEE
Confidence 000011111122 23 46777788999999999998764421 111 1111222 3444554
Q ss_pred -ecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 359 -RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 359 -~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..++.+..+|..+ ++.+-....-..... .+... .+..|+.++.||.|++.|..+|+..
T Consensus 300 ~~~~g~l~ald~~t-G~~~W~~~~~~~~~~--------------~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 300 VDQNDRVYALDTRG-GVELWSQSDLLHRLL--------------TAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EcCCCeEEEEECCC-CcEEEcccccCCCcc--------------cCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 4469999999985 554322211010000 01222 2557788899999999999998754
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.09 E-value=7.5e-05 Score=71.76 Aligned_cols=180 Identities=11% Similarity=0.085 Sum_probs=112.5
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccC
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (461)
+.++.|+....+..+| +..... .+.. .-....|. -...+++.+.+| ..|+|.+-|.++.+...
T Consensus 148 ~~~i~Gg~Q~~li~~D-l~~~~e------~r~~-~v~a~~v~--imR~Nnr~lf~G~t~G~V~LrD~~s~~~ih------ 211 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHID-LNTEKE------TRTT-NVSASGVT--IMRYNNRNLFCGDTRGTVFLRDPNSFETIH------ 211 (1118)
T ss_pred cceeecchhhheeeee-ccccee------eeee-eccCCceE--EEEecCcEEEeecccceEEeecCCcCceee------
Confidence 3357777777777777 322111 1111 11122233 234567888999 79999999998655443
Q ss_pred CCCCCCCCcceEEEEEeCCCCCeEEEEec---------CCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 275 PANMEDLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 275 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
++..|.+.|..+... | ++|++++. |.-|++||+|.-+. +..+.-+. .-.
T Consensus 212 --t~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~-------------~P~ 269 (1118)
T KOG1275|consen 212 --TFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPY-------------GPQ 269 (1118)
T ss_pred --eeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhc----cCCccccc-------------Cch
Confidence 567799988765554 6 78888876 45689999998654 22222222 124
Q ss_pred EEEEccC--CCEEEEecCCeEEEEEccCCCCC-eeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeE
Q 012535 346 DIKFARN--GRHILSRDYMTLKLWDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (461)
Q Consensus 346 ~l~~s~~--g~~l~s~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (461)
-+.|.|. .+..++...|...+-|...-+++ ...+..+.... .+..+.++++++.|+.|..+|.|
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-------------~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-------------GISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC-------------cceeEEecCCCceEEEecccCcE
Confidence 4667773 33444445689999884332333 33333332211 02489999999999999999999
Q ss_pred EEEe
Q 012535 423 RVFG 426 (461)
Q Consensus 423 ~iw~ 426 (461)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9998
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.07 E-value=0.0063 Score=53.31 Aligned_cols=165 Identities=9% Similarity=0.056 Sum_probs=87.4
Q ss_pred EEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcc-eEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccc
Q 012535 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 247 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
+...|.||.+.-..+....+...... .-+....++ +..-++...+ ..++.-+.+|.|+--|+....... ...+
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t---~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~ 223 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKST---KVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPW 223 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEE---EESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEE
T ss_pred eEEEecCCceEEEEECCCCCEeEeec---cccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcc
Confidence 44445788888887775444332110 012222222 2344555555 566768899999998887764311 1111
Q ss_pred ccccCCCccccccccccceeEEEEccCCCEEEE----ec-----C--CeEEEEEccCCCCCeeEEeeccCcccccccccc
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD-----Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s----~~-----d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (461)
..-....... .--.+.-.-+++++....|+. +. + ..|.++|+.+ ++.+.++..... +
T Consensus 224 ~~~t~~e~~~--~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~-~-------- 291 (342)
T PF06433_consen 224 SLLTDAEKAD--GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHP-I-------- 291 (342)
T ss_dssp ESS-HHHHHT--TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEE-E--------
T ss_pred cccCcccccc--CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCc-c--------
Confidence 1000000000 000144556788875544443 21 2 3688888886 888888874322 1
Q ss_pred CCCccceeeEEEecCCC-EEEE-ecCCCeEEEEecCCCCcccee
Q 012535 395 NDSIFDKFECCLSGDGG-RVAT-GSYSNLFRVFGCSEGSAESTT 436 (461)
Q Consensus 395 ~~~~~~v~~~~~s~~~~-~l~s-~~~dg~i~iw~~~~~~~~~~~ 436 (461)
.+++.+.|.+ +|++ ...++.|.+||..+|+.....
T Consensus 292 -------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 292 -------DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp -------SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred -------ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 3788888765 5654 456899999999999766433
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.03 E-value=0.0017 Score=59.33 Aligned_cols=293 Identities=12% Similarity=0.169 Sum_probs=141.2
Q ss_pred cCCCCEEEEee---------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 44 DKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 44 s~~g~~l~tg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
|||+++++... ..+.+.|+|+.+++.. .+.... ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~------------------------~l~~~~------------~~ 44 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT------------------------PLTPPP------------PK 44 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE------------------------ESS-EE------------TT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE------------------------ECcCCc------------cc
Confidence 68888877743 3467889998876421 111112 55
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCc---ccc--ccccCcceeecCCCccccc
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI---FGS--HVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~--~~~~~~~~~~~~g~~~~~~ 189 (461)
+....|+| +|+.++... ++.|.+++..++...++.... .. ....|.. ... ......+.|+|+|+.+...
T Consensus 45 ~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~--~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 45 LQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EP--GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp BSEEEE-S--SSTEEEEEE-TTEEEEESSTTSEEEESES---TT--TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred cccceeec--CCCeeEEEe-cCceEEEECCCCCeEEecccc-ce--eEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 88899995 576777764 577999988777544433322 11 0001110 000 0112378999999988655
Q ss_pred ccCCCC----------------------CccccccCCCcEEeeeeecccCccccceeeEe-eecccccceeeEEeCCCCC
Q 012535 190 FGCASN----------------------DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGE 246 (461)
Q Consensus 190 ~~~~~~----------------------~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~ 246 (461)
...... .+=..|..+..+.++- +. .+.......... .......-+..+.|.++++
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v-~~-~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFV-VD-LASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEE-EE-SSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEE-EE-CCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 322211 1122344445555432 11 111111110000 0022345577888999988
Q ss_pred EE-EEe---C--CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEe-CCCCCeEEEEecCCe--EEEEECCCccc
Q 012535 247 TF-ISA---D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS--IRLIDMRQSAL 317 (461)
Q Consensus 247 ~l-~~~---~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~dg~--i~iwd~~~~~~ 317 (461)
.| +.- . ...+.++|..++.......... .+--..-....|. +++..+|.....||- |.+++...+..
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~ 272 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP 272 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred EEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence 33 332 2 2344555666543332221111 1111222355554 666466666667775 44455555442
Q ss_pred ccccccccccccCCCcccccccccccee-EEEEccCCCEEE-Eec--C-CeEEEEEccCC-CCCeeEEeeccCccccccc
Q 012535 318 CDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHIL-SRD--Y-MTLKLWDINMD-SGPVATFQVHEHLRPKLCD 391 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~g~~l~-s~~--d-~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~ 391 (461)
..+.... -.|. -+.++++++.|. +|. + ..-.||.+... +..+..++......
T Consensus 273 -----~~lT~G~------------~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~----- 330 (353)
T PF00930_consen 273 -----RQLTSGD------------WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH----- 330 (353)
T ss_dssp -----EESS-SS------------S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-----
T ss_pred -----eccccCc------------eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-----
Confidence 2222111 3453 477888777655 343 2 45566666543 45555555443321
Q ss_pred cccCCCccceeeEEEecCCCEEEEe
Q 012535 392 LYENDSIFDKFECCLSGDGGRVATG 416 (461)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (461)
..+.|||++++++-.
T Consensus 331 ----------~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 331 ----------YSASFSPDGKYYVDT 345 (353)
T ss_dssp ----------EEEEE-TTSSEEEEE
T ss_pred ----------eEEEECCCCCEEEEE
Confidence 279999999988743
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.03 E-value=8.9e-05 Score=71.26 Aligned_cols=184 Identities=15% Similarity=0.178 Sum_probs=122.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
+..++.|+....+..+|+.+.+..+....... .+ .-...+++. +++|...|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~--------~v---------~imR~Nnr~------------lf~G~t~G 197 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS--------GV---------TIMRYNNRN------------LFCGDTRG 197 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCC--------ce---------EEEEecCcE------------EEeecccc
Confidence 45788888888888889888776665544321 11 122334454 59999999
Q ss_pred cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--C--------CCeEEEEEccCCCCceeeeccCC
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVKP 275 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--------d~~i~iwd~~~~~~~~~~~~~~~ 275 (461)
+|.+-| ... .+....+ .+|++.|.++ +-.|+.|+++ + |.-|++||++..+....+
T Consensus 198 ~V~LrD-~~s------~~~iht~-~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI----- 262 (1118)
T KOG1275|consen 198 TVFLRD-PNS------FETIHTF-DAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI----- 262 (1118)
T ss_pred eEEeec-CCc------Cceeeee-eccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCc-----
Confidence 999888 333 3334444 8999988765 5568888874 2 455889999976554321
Q ss_pred CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCE
Q 012535 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (461)
Q Consensus 276 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~ 355 (461)
.+ +.+ ..-+.|+|.-+..+++++..|...+-|..+...- ....+..+.. ...+..++++++|+.
T Consensus 263 -~~--~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~----------~s~i~~fDiSsn~~a 326 (1118)
T KOG1275|consen 263 -QF--PYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPN----------GSGISAFDISSNGDA 326 (1118)
T ss_pred -cc--ccC-chhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccC----------CCcceeEEecCCCce
Confidence 12 222 2567889987788999999999999993322110 0111111111 145999999999999
Q ss_pred EEEec-CCeEEEEEc
Q 012535 356 ILSRD-YMTLKLWDI 369 (461)
Q Consensus 356 l~s~~-d~~i~vwd~ 369 (461)
|+.|+ +|.|.+|.-
T Consensus 327 lafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccCcEeeecC
Confidence 99998 599999983
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.02 E-value=0.0035 Score=57.51 Aligned_cols=177 Identities=12% Similarity=0.070 Sum_probs=90.2
Q ss_pred ecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCC-CCCCCCcceEEEEEeC---CCC----CeEE
Q 012535 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHP---THC----NMLA 299 (461)
Q Consensus 229 ~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p---~~~----~~l~ 299 (461)
+....++|++++.+.-| +++.| .+|.+.|.|++...-.++. .+... .-......++++.|.- .+. -.++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 35668999999998555 88888 8999999999855444331 11110 1112456788888862 111 3688
Q ss_pred EEecCCeEEEEECCC-cccccccccccccccCCCccccccccccceeEEE-EccC---------------------CCEE
Q 012535 300 YSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK-FARN---------------------GRHI 356 (461)
Q Consensus 300 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~s~~---------------------g~~l 356 (461)
+|...|.+.+|.+.- ..- .+...+.... ..+.++|..+. |+.+ ..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g--~f~v~~~~~~--------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNG--RFSVQFAGAT--------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG---EEEEEEEEE----------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred EEeCCCCEEEEEEecCCCC--ceEEEEeecc--------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 899999999998752 110 0011111110 01113333333 2111 1267
Q ss_pred EEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE-----ecCCCEEEEecCCCeEEEEecCCCC
Q 012535 357 LSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-----SGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 357 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
+++++..++++...+ .+............ ..+++ ...+..|++-..+|.|++|.+..-+
T Consensus 230 VvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 230 VVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp EEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred EEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 777888999999875 44433332111111 13334 2356678888999999999998765
Q ss_pred cc
Q 012535 432 AE 433 (461)
Q Consensus 432 ~~ 433 (461)
.+
T Consensus 294 ei 295 (395)
T PF08596_consen 294 EI 295 (395)
T ss_dssp EE
T ss_pred Hh
Confidence 44
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.00 E-value=0.0042 Score=54.38 Aligned_cols=268 Identities=12% Similarity=0.128 Sum_probs=136.4
Q ss_pred cceEEEEEcCCCCEEEEee----------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhh
Q 012535 36 DIISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (461)
+-.-.+..+||++.+++++ ..-.|.+||..+....++. .++ +..+....
T Consensus 36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI--~iP---------~k~R~~~~---------- 94 (342)
T PF06433_consen 36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI--EIP---------PKPRAQVV---------- 94 (342)
T ss_dssp ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE--EET---------TS-B--BS----------
T ss_pred ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE--ecC---------Ccchheec----------
Confidence 3344577899999888753 3447999998875422100 000 00011100
Q ss_pred ccccccccceEEEEEeecCCCcEEEEE--eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCC
Q 012535 106 LKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (461)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (461)
...+.++++ .|++++++. +-.-.|.|-|+..++......... |.-.-|.+
T Consensus 95 -------~~~~~~~ls--~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------------------C~~iyP~~ 146 (342)
T PF06433_consen 95 -------PYKNMFALS--ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------------------CWLIYPSG 146 (342)
T ss_dssp ---------GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------EEEEEEEE
T ss_pred -------ccccceEEc--cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------------------EEEEEecC
Confidence 012234555 567777665 455678888888887766555432 22333333
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC-CCEEEEeCCCeEEEEEcc
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLE 262 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~d~~i~iwd~~ 262 (461)
.. -+.+-|.||.+.-.. +..... ........|...+...+..-++... +.++....+|.|+--|+.
T Consensus 147 ~~-----------~F~~lC~DGsl~~v~-Ld~~Gk-~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 147 NR-----------GFSMLCGDGSLLTVT-LDADGK-EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp TT-----------EEEEEETTSCEEEEE-ETSTSS-EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred CC-----------ceEEEecCCceEEEE-ECCCCC-EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 22 136778888887766 432222 1222222331222222223334333 445566688999988887
Q ss_pred CCCCcee-eeccCC---CCCCCCCcceEEEEEeCCCCCeEEEEecCC----------eEEEEECCCcccccccccccccc
Q 012535 263 ISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSKG----------SIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 263 ~~~~~~~-~~~~~~---~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
.....+. -+.+-. ..-....+.-.-+++++.. +.|++.-..| .|-++|+.+++. +..++..
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr----v~Ri~l~ 288 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR----VARIPLE 288 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTTTEE----EEEEEEE
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCCCeE----EEEEeCC
Confidence 4432211 010000 0001112333457777765 4444433221 477778888775 4445443
Q ss_pred cCCCccccccccccceeEEEEccCCC-EEEEe--cCCeEEEEEccCCCCCeeEEeeccC
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGR-HILSR--DYMTLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
.++.+|..+.+.+ +|++. .++.+.+||..+ ++.+..+..-..
T Consensus 289 -------------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~lG~ 333 (342)
T PF06433_consen 289 -------------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQLGE 333 (342)
T ss_dssp -------------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---SS
T ss_pred -------------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhccCC
Confidence 4588999999776 55443 358999999997 888888875443
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00027 Score=61.58 Aligned_cols=78 Identities=9% Similarity=0.208 Sum_probs=62.7
Q ss_pred cccccceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..|...|..++|||..+ +|..++.+..|+|.|+.+... ...+..|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----------------------vssy~a~----------- 235 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----------------------VSSYIAY----------- 235 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccccee-----------------------eeheecc-----------
Confidence 35778899999999776 788999999999999987653 2344445
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK 146 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~ 146 (461)
..+++++|.-+ +.+++++|-..|.|.+||++..
T Consensus 236 --~~~wSC~wDld-e~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 236 --NQIWSCCWDLD-ERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred --CCceeeeeccC-CcceeEEeccCceEEEEEccCC
Confidence 34999999853 3678888899999999999864
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.99 E-value=0.00086 Score=66.90 Aligned_cols=242 Identities=13% Similarity=0.071 Sum_probs=129.6
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.++.|. .+...++.+..+|.|.+-|..+......-.. .+.|. +++|+||++.+
T Consensus 69 ~~i~s~~fl--~d~~~i~v~~~~G~iilvd~et~~~eivg~v---------d~GI~-------aaswS~Dee~l------ 124 (1265)
T KOG1920|consen 69 DEIVSVQFL--ADTNSICVITALGDIILVDPETLELEIVGNV---------DNGIS-------AASWSPDEELL------ 124 (1265)
T ss_pred cceEEEEEe--cccceEEEEecCCcEEEEcccccceeeeeec---------cCceE-------EEeecCCCcEE------
Confidence 459999998 5667899999999999998877665443222 12233 67899999985
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCce--ee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF--NI 270 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~--~~ 270 (461)
+..+..+++.+-. ...+.... .+. ...-.+.++.+-.|....=.-+.-..++... .+
T Consensus 125 ------~liT~~~tll~mT--~~f~~i~E------------~~L-~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~ 183 (1265)
T KOG1920|consen 125 ------ALITGRQTLLFMT--KDFEPIAE------------KPL-DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKI 183 (1265)
T ss_pred ------EEEeCCcEEEEEe--ccccchhc------------ccc-ccccccccccceecccccceeeecchhhhcccccc
Confidence 5566666665533 00010000 000 1111222333333311111111111111000 00
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEec----C-CeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----K-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
...+........+.=++|.|--|| .++|+... + +.|++||-. +.+ .....+. .+--.
T Consensus 184 ~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~L-----ns~se~~-----------~~l~~ 245 (1265)
T KOG1920|consen 184 EKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GAL-----NSTSEPV-----------EGLQH 245 (1265)
T ss_pred cccccccchhhccCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chh-----hcccCcc-----------ccccc
Confidence 000000000122334679999998 88887432 3 799999987 442 1111111 03356
Q ss_pred EEEEccCCCEEEEe----cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEE---ecC
Q 012535 346 DIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT---GSY 418 (461)
Q Consensus 346 ~l~~s~~g~~l~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s---~~~ 418 (461)
+++|-|.|..+++- +++.|.+|.-+ |-.-..|...... ... .+..++|+.++..||+ ...
T Consensus 246 ~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f~l~~p~--------de~---~ve~L~Wns~sdiLAv~~~~~e 312 (1265)
T KOG1920|consen 246 SLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEFVLPFPL--------DEK---EVEELAWNSNSDILAVVTSNLE 312 (1265)
T ss_pred ceeecCCCCeEeeeeecCCCCcEEEEecC--CccccccccCCcc--------ccc---chheeeecCCCCceeeeecccc
Confidence 79999999999982 45789998865 2221111111000 000 0238999999999987 555
Q ss_pred CCeEEEEecCCC
Q 012535 419 SNLFRVFGCSEG 430 (461)
Q Consensus 419 dg~i~iw~~~~~ 430 (461)
...|++|-+.+-
T Consensus 313 ~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 313 NSLVQLWTTGNY 324 (1265)
T ss_pred cceEEEEEecCe
Confidence 556999998874
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.0006 Score=65.31 Aligned_cols=109 Identities=13% Similarity=0.266 Sum_probs=76.8
Q ss_pred EEEEEeecCCCcEEEEEe----CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 116 NKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
+-..|+|... +|++++ ..|.|.||- ++|+...-...+.+ ..+++|+|..-.+
T Consensus 19 ti~SWHPseP--lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h----------------atSLCWHpe~~vL----- 74 (1416)
T KOG3617|consen 19 TISSWHPSEP--LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH----------------ATSLCWHPEEFVL----- 74 (1416)
T ss_pred cccccCCCCc--eeEEEEecCCCCceEEEEe-cCCCCCccccccee----------------hhhhccChHHHHH-----
Confidence 4457887543 788775 567888875 44443332222211 1178999988774
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccC
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (461)
+.|-.-|.+.+|. ....+. .+....|..+|..+.|+++|..++++ .-|.+.+|.+..
T Consensus 75 -------a~gwe~g~~~v~~-~~~~e~-------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 75 -------AQGWEMGVSDVQK-TNTTET-------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred -------hhccccceeEEEe-cCCcee-------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 8899999999998 222221 22236889999999999999999999 789999998763
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00018 Score=66.41 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=98.1
Q ss_pred ccceeeEEeCCCCCEEEEe--C--C-CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCe-
Q 012535 233 DYHINSISNNSDGETFISA--D--D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS- 306 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~- 306 (461)
...+..-+|+|++..++.. . . ..+.++++++++..... ++ ...-...+|+|||.+++++...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~---~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NF---NGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------cc---CCccCCccCCCCCCEEEEEECCCCCc
Confidence 3556677899998887754 2 2 45899999977655432 22 3334467899999666666667775
Q ss_pred -EEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC--CeEEEEEccCCCCCeeEEeecc
Q 012535 307 -IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 307 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d--~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
|.++|+..+.. ..+.... +.-..=.|+|||++|+-.+| |.-.||-...++.....+....
T Consensus 263 ~iy~~dl~~~~~-----~~Lt~~~------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 263 DIYLMDLDGKNL-----PRLTNGF------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred cEEEEcCCCCcc-----eecccCC------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 55567766652 1121111 22235679999999997654 5545544443455555555444
Q ss_pred CccccccccccCCCccceeeEEEecCCCEEEEecC-CCe--EEEEecCCCC
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGS 431 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~--i~iw~~~~~~ 431 (461)
..- ..-.|+|||++|+..+. +|. |.+.++.++.
T Consensus 326 ~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 326 GGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 322 15679999999887664 344 7777776665
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.94 E-value=0.006 Score=51.81 Aligned_cols=218 Identities=11% Similarity=0.157 Sum_probs=108.7
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..+..|+|.|. ++.++++....+.|...+.+ |++.+....... +- +..+++..++.++
T Consensus 22 ~e~SGLTy~pd-~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~-------~D-------~EgI~y~g~~~~v------ 79 (248)
T PF06977_consen 22 DELSGLTYNPD-TGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF-------GD-------YEGITYLGNGRYV------ 79 (248)
T ss_dssp S-EEEEEEETT-TTEEEEEETTTTEEEEEETT---EEEEEE-SS--------SS-------EEEEEE-STTEEE------
T ss_pred CCccccEEcCC-CCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC-------CC-------ceeEEEECCCEEE------
Confidence 44999999963 35677777888999888864 566655544321 00 1156776667653
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEe----eecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccC--CC
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI----YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SN 265 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~--~~ 265 (461)
++...++.+.+++ +.............. +...+...+-.++|++.++.|+.+ +..-..+|.++. ..
T Consensus 80 ------l~~Er~~~L~~~~-~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~ 152 (248)
T PF06977_consen 80 ------LSEERDQRLYIFT-IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG 152 (248)
T ss_dssp ------EEETTTTEEEEEE-E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S
T ss_pred ------EEEcCCCcEEEEE-EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc
Confidence 5555678888877 422221111111111 112355678999999998888777 555566666653 12
Q ss_pred CceeeeccCC-CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 266 QSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
.......... .........+.+++++|....+++.+..+..|..+|. +++... ...+.... ..+.......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~--~~~L~~g~-----~gl~~~~~Qp 224 (248)
T PF06977_consen 153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVS--SLSLDRGF-----HGLSKDIPQP 224 (248)
T ss_dssp S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEE--EEE-STTG-----GG-SS---SE
T ss_pred cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEE--EEEeCCcc-----cCcccccCCc
Confidence 1211111000 0011133457899999987578888888999999994 444321 11221100 0000111346
Q ss_pred eEEEEccCCCEEEEecCCeEEEE
Q 012535 345 SDIKFARNGRHILSRDYMTLKLW 367 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~d~~i~vw 367 (461)
-.|+|.++|++.+++.-+..++|
T Consensus 225 EGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT--EEEEETTTEEEEE
T ss_pred cEEEECCCCCEEEEcCCceEEEe
Confidence 78999999987777654655544
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.89 E-value=0.0013 Score=61.05 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=76.4
Q ss_pred cCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C
Q 012535 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (461)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (461)
|..+.++|+|+.+ +.+.+|.-.+|. . .. .. ....+.-..++|.+.+ .+|+- .
T Consensus 35 p~~ls~npngr~v-------------~V~g~geY~iyt-~---~~---~r------~k~~G~g~~~vw~~~n-~yAv~~~ 87 (443)
T PF04053_consen 35 PQSLSHNPNGRFV-------------LVCGDGEYEIYT-A---LA---WR------NKAFGSGLSFVWSSRN-RYAVLES 87 (443)
T ss_dssp -SEEEE-TTSSEE-------------EEEETTEEEEEE-T---TT---TE------EEEEEE-SEEEE-TSS-EEEEE-T
T ss_pred CeeEEECCCCCEE-------------EEEcCCEEEEEE-c---cC---Cc------ccccCceeEEEEecCc-cEEEEEC
Confidence 4488999999984 337777777765 1 00 00 1112455678899854 46666 6
Q ss_pred CCeEEEE-EccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 253 DLRINLW-NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 253 d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
.+.|.++ +.+ ......+ .+ ...+..+-. | .+|+..+.+ .|.+||..+++. ++.++.
T Consensus 88 ~~~I~I~kn~~-~~~~k~i------~~---~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~----i~~i~v---- 144 (443)
T PF04053_consen 88 SSTIKIYKNFK-NEVVKSI------KL---PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKL----IRRIDV---- 144 (443)
T ss_dssp TS-EEEEETTE-E-TT--------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--E----EEEESS----
T ss_pred CCeEEEEEcCc-cccceEE------cC---CcccceEEc---C-cEEEEECCC-CEEEEEhhHcce----eeEEec----
Confidence 8889996 333 2221111 11 112333322 6 677766554 899999999876 455543
Q ss_pred CccccccccccceeEEEEccCCCEEEEecCCeEEEEEccC
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
.+|..+.|+++|.+++..++..+.|++.+.
T Consensus 145 ----------~~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 145 ----------SAVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp -----------E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred ----------CCCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 348999999999999998877899988753
No 335
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.89 E-value=0.0041 Score=52.84 Aligned_cols=211 Identities=14% Similarity=0.150 Sum_probs=104.0
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEee-ecccccceeeEEeCCCCCEEEEe-CC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DD 253 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (461)
+++|.|+...+ +++....+.|..++ .+. +..+.+ +.+ .+..-.|++..++.++++. .+
T Consensus 26 GLTy~pd~~tL-----------faV~d~~~~i~els----~~G----~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 26 GLTYNPDTGTL-----------FAVQDEPGEIYELS----LDG----KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp EEEEETTTTEE-----------EEEETTTTEEEEEE----TT------EEEEEE-SS--SSEEEEEE-STTEEEEEETTT
T ss_pred ccEEcCCCCeE-----------EEEECCCCEEEEEc----CCC----CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCC
Confidence 78999987765 46667777776655 222 222222 233 3567788888888777777 69
Q ss_pred CeEEEEEccCCCCceeeec---cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC--c-ccc-cccccccc
Q 012535 254 LRINLWNLEISNQSFNIVD---VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--S-ALC-DTHSKLFE 326 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~--~-~~~-~~~~~~~~ 326 (461)
+.+.++++..........+ +.......++..+-.++|+|.+ +.|+.+-...-..||.++. . ... ......+.
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 9999999854333222111 1101112355668999999987 6666666666666776654 1 100 00000000
Q ss_pred cccCCCccccccccccceeEEEEccC-CCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeE
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~-g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (461)
. .......+.+++++|. |.+++.++. ..|..+|.. ++++..+.-..+... +. +.+.---.+
T Consensus 165 ~---------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~g-l~-----~~~~QpEGI 227 (248)
T PF06977_consen 165 D---------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHG-LS-----KDIPQPEGI 227 (248)
T ss_dssp ----------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG--S-----S---SEEEE
T ss_pred c---------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccC-cc-----cccCCccEE
Confidence 0 0011245889999995 455555554 899999954 777766654432110 00 000001279
Q ss_pred EEecCCCEEEEecCCCeEEEE
Q 012535 405 CLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iw 425 (461)
+|.++|++.++ ++-+..++|
T Consensus 228 a~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EE-TT--EEEE-ETTTEEEEE
T ss_pred EECCCCCEEEE-cCCceEEEe
Confidence 99999976555 466777665
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.87 E-value=0.00095 Score=61.99 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=85.2
Q ss_pred ccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEE
Q 012535 231 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (461)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 310 (461)
.....+..+.++|++++++.+.+|.-.++........ ..+.-..++|.+.+ .+|+-..+++|.|+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-------------AFGSGLSFVWSSRN--RYAVLESSSTIKIY 94 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEE
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-------------ccCceeEEEEecCc--cEEEEECCCeEEEE
Confidence 3345578999999999999998899999884322111 24556788899954 57777778999997
Q ss_pred ECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCcccccc
Q 012535 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (461)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 390 (461)
.--.... ...+... ..+..+-. |.+|...+++.|.+||+.+ ++.+..+.... +
T Consensus 95 kn~~~~~----~k~i~~~-------------~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v---- 147 (443)
T PF04053_consen 95 KNFKNEV----VKSIKLP-------------FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V---- 147 (443)
T ss_dssp ETTEE-T----T-----S-------------S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E-------
T ss_pred EcCcccc----ceEEcCC-------------cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C----
Confidence 4322221 1222221 12333322 8888887777999999996 78888886442 2
Q ss_pred ccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
..+.|++++.+++-.+.+ .++|++.+
T Consensus 148 -----------k~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 148 -----------KYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -----------EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred -----------cEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 389999999999988865 67777765
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.84 E-value=0.0076 Score=57.33 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=67.7
Q ss_pred eCCCCCEEEEeCCCeEEEEEccC----CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 241 NNSDGETFISADDLRINLWNLEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 241 ~~~~~~~l~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
+.++|++... .++.|.+.|.++ .......+ .-......+.++|||..+++++..+.++.++|+.+.+
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yI--------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYV--------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEE--------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 3456766554 467899999886 22222211 1355678999999994455566669999999998754
Q ss_pred ccc-ccc---cccccccCCCccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccC
Q 012535 317 LCD-THS---KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (461)
Q Consensus 317 ~~~-~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~ 371 (461)
..- ..+ ..+...-. -...-...+|+++|....+- -|..|..||+..
T Consensus 355 ~~~~~~~~~~~~vvaeve---------vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPE---------LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhccCCccceEEEeec---------cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 210 000 00000000 00123457889888755553 378999999874
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.79 E-value=0.00079 Score=63.72 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=53.8
Q ss_pred cceeEEEEccCCCEEEEec--CCeEEEEEccCCCC-----------CeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 342 ASISDIKFARNGRHILSRD--YMTLKLWDINMDSG-----------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
.....+.++|||+++++++ +++|.|.|+.+... .+...+.-.++ +..+|++
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 4578899999999999876 49999999986221 12222222222 2688999
Q ss_pred CCCEEEEecCCCeEEEEecCC
Q 012535 409 DGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~ 429 (461)
+|....|---|..|-.|++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEeEeecceeEEEehHH
Confidence 999888888999999999986
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00025 Score=66.39 Aligned_cols=122 Identities=11% Similarity=0.152 Sum_probs=87.2
Q ss_pred cccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEE
Q 012535 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (461)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 310 (461)
+...|.--+++..+++++.| +-|.+.+|+...+..... ...+....+..+..+++. .++|+|+..|.|.++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSVF 103 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-------cccCccceEEEEEecchh-HhhhhhcCCceEEee
Confidence 34455556678889999999 899999999775443321 233345556677888887 899999999999999
Q ss_pred ECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccC
Q 012535 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (461)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~ 371 (461)
-+.....-.. +..-..+ ..|...|++++|++++..+++|++ |.|..-.+++
T Consensus 104 ql~~~~p~~~-~~~t~~d---------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRDL-DYVTPCD---------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCcc-eeecccc---------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 8877432111 1111111 125688999999999999999987 9988877764
No 340
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.68 E-value=0.026 Score=51.77 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=57.0
Q ss_pred ccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec----C--
Q 012535 337 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG----D-- 409 (461)
Q Consensus 337 ~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~-- 409 (461)
+.+....+.+++.+|++++.|+.+. |+|.++|+.+ +..++.+++..... +.|-. .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAq-----------------c~wi~~~~~~~~ 364 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQ-----------------CGWIEVPEEGDR 364 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccce-----------------EEEEEeeccccc
Confidence 3444567899999999988888766 9999999996 88888888766532 22210 0
Q ss_pred --------------CC-EEEEecCCCeEEEEecCCCCcc
Q 012535 410 --------------GG-RVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 410 --------------~~-~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.. +++-+-.-|.|-||.++.|..+
T Consensus 365 ~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 365 DRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred ccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEE
Confidence 11 2345667899999999998766
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.62 E-value=0.022 Score=56.41 Aligned_cols=213 Identities=15% Similarity=0.190 Sum_probs=117.6
Q ss_pred CCcEEEEE-eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccC
Q 012535 125 NSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (461)
Q Consensus 125 ~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (461)
+..+|+.. .....|.-.|++.|+++.....+... .+ ..+.|+.+. .....+..+.|-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-------~v---------~~~~p~~K~-----aqlt~e~tflGls 550 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-------PV---------VDIAPDSKF-----AQLTNEQTFLGLS 550 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-------ce---------eEecccccc-----cccCCCceEEEEC
Confidence 33444444 35677888899999888777665421 11 134444332 1111233588889
Q ss_pred CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCc
Q 012535 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (461)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (461)
+..+..|| .+...........+.+ .......|++-+.+|.+.+.+.+|.||+||.- +.... ..+++...
T Consensus 551 ~n~lfriD-pR~~~~k~v~~~~k~Y--~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AK-------T~lp~lG~ 619 (794)
T PF08553_consen 551 DNSLFRID-PRLSGNKLVDSQSKQY--SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAK-------TALPGLGD 619 (794)
T ss_pred CCceEEec-cCCCCCceeecccccc--ccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhh-------hcCCCCCC
Confidence 99999999 4322211111111111 23456778888877854444489999999953 33322 24677899
Q ss_pred ceEEEEEeCCCCCeEEEEecCCeEEEEECCC--cc--cccccccccccccCCCcc-cccc-ccc----------cceeEE
Q 012535 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SA--LCDTHSKLFEEQEAPGTR-SFFT-EII----------ASISDI 347 (461)
Q Consensus 284 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~-~~~~-~h~----------~~v~~l 347 (461)
+|..|..+.|| +++++.+ +..+.|++..- +. ........+.....|.++ ..+. .|. -..+..
T Consensus 620 pI~~iDvt~DG-kwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a 697 (794)
T PF08553_consen 620 PIIGIDVTADG-KWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA 697 (794)
T ss_pred CeeEEEecCCC-cEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence 99999999999 7776544 45677777531 11 000111222221111111 1111 121 223344
Q ss_pred EEcc----CCCEEEEecCCeEEEEEccC
Q 012535 348 KFAR----NGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 348 ~~s~----~g~~l~s~~d~~i~vwd~~~ 371 (461)
.|+- ..+.|+++...-+.+|+++.
T Consensus 698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 698 KFNTGIGKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred EEecCCCCccceEEEeccCEEEEEEHHH
Confidence 4542 34678887778999999873
No 342
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.59 E-value=0.0021 Score=55.15 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=84.2
Q ss_pred CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
++|.|..||.++++...+. .+........+.... ++ ..+++++.++.|..||..+++..++ +....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~l~~~d~~tG~~~W~----~~~~~-- 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY------DLGPGIGGPVATAVP-DG-GRVYVASGDGNLYALDAKTGKVLWR----FDLPG-- 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE------ECSSSCSSEEETEEE-ET-TEEEEEETTSEEEEEETTTSEEEEE----EECSS--
T ss_pred CCCEEEEEECCCCCEEEEE------ECCCCCCCccceEEE-eC-CEEEEEcCCCEEEEEECCCCCEEEE----eeccc--
Confidence 3688999999877766653 121111222222232 34 5777778999999999999986432 22211
Q ss_pred CccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEE-eeccCccccccccccCCCccceeeEEEecCC
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
.+.......++..++...++.++.+|..+ ++.+-.. ........ .. .......++
T Consensus 67 -----------~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~----------~~--~~~~~~~~~ 122 (238)
T PF13360_consen 67 -----------PISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG----------VR--SSSSPAVDG 122 (238)
T ss_dssp -----------CGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS----------TB----SEEEEET
T ss_pred -----------cccceeeecccccccccceeeeEecccCC-cceeeeeccccccccc----------cc--cccCceEec
Confidence 11111122344454455678999999886 7777663 33321110 00 122333347
Q ss_pred CEEEEecCCCeEEEEecCCCCcc
Q 012535 411 GRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 411 ~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..++.+..++.|..+|+++|+..
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEE
T ss_pred CEEEEEeccCcEEEEecCCCcEE
Confidence 78888888999999999999764
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0059 Score=56.61 Aligned_cols=185 Identities=13% Similarity=0.166 Sum_probs=100.3
Q ss_pred eEEEEEeecCCCcEEEEEe---CC-CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 115 INKIRWCQSANSALYLLST---ND-KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~---~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
+..-+|+| ++..++-.+ .. ..+.++++.+++...+....... . ..+|+|+|+.+
T Consensus 195 ~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---------~-------~P~fspDG~~l---- 252 (425)
T COG0823 195 ILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---------G-------APAFSPDGSKL---- 252 (425)
T ss_pred eeccccCc--CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---------C-------CccCCCCCCEE----
Confidence 45556774 344443332 22 35888888888766665533221 1 45899999986
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCce
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSF 268 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~ 268 (461)
+++...+|...+|- +. ....... .+ ..-.+.-..-.|+|+|+.++-. ..|.-.||-.+......
T Consensus 253 -------~f~~~rdg~~~iy~-~d-l~~~~~~----~L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 253 -------AFSSSRDGSPDIYL-MD-LDGKNLP----RL-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred -------EEEECCCCCccEEE-Ec-CCCCcce----ec-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 57777778777764 21 1111111 11 1111222256799999998876 35555555443222222
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CCe--EEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
..+ +...... ..-.|+|+| ++++..+. +|. |.+.|+.++.. .+.+... ....
T Consensus 319 ~ri-----T~~~~~~--~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~----~~~lt~~-------------~~~e 373 (425)
T COG0823 319 TRL-----TFSGGGN--SNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGK----IRILTST-------------YLNE 373 (425)
T ss_pred eEe-----eccCCCC--cCccCCCCC-CEEEEEeccCCceeeEEeccCCCCc----EEEcccc-------------ccCC
Confidence 211 2222222 277899999 66666554 344 66666655542 1222211 1233
Q ss_pred EEEEccCCCEEEEec
Q 012535 346 DIKFARNGRHILSRD 360 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~ 360 (461)
.-.|.++|+.+...+
T Consensus 374 ~ps~~~ng~~i~~~s 388 (425)
T COG0823 374 SPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCcCCCCceEEEec
Confidence 456778888877643
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0016 Score=61.35 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=84.8
Q ss_pred CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC
Q 012535 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (461)
Q Consensus 282 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d 361 (461)
...+.--+++..+ ++++.|+.-|.+++|+-..+... .....+.. +.+..+..+++..++|+|++
T Consensus 33 ~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~---~~~~~~~~------------~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 33 PARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMR---KLKNEGAT------------GITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred cceEEEEEeecCC-ceEEEecccceEEEEecCchhhh---cccccCcc------------ceEEEEEecchhHhhhhhcC
Confidence 3344444555666 89999999999999998777642 12222222 56777888888888888886
Q ss_pred -CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 362 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
|.|.++-+.....+-..+-.+.... .-..|++++|++++..|.+|...|.|.+-.+++
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~d~~----------~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPCDKS----------HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEeehhhccCCCcceeecccccc----------CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9999998876332222332222210 112357999999999999999999999988887
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0008 Score=62.39 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=62.0
Q ss_pred cceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceE-EEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
..+.-+.|+|.-.++|.+ .+|.|.+..++ ..+... ++-+...++ +++|.||| ++||+|-.||+|++-|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 456778999999999999 89999999887 555543 333455555 99999999 9999999999999999
Q ss_pred CCCcccc
Q 012535 312 MRQSALC 318 (461)
Q Consensus 312 ~~~~~~~ 318 (461)
..++..+
T Consensus 91 ve~~~~l 97 (665)
T KOG4640|consen 91 VEKGGRL 97 (665)
T ss_pred ccCCCce
Confidence 9998763
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.40 E-value=0.0003 Score=39.96 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=28.8
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEE
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (461)
.|...|.+++|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5778999999999999999999999999996
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0046 Score=59.61 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=62.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
+.+..-.+++++|+|..-.||.|-.-|.+.+|...+.+ ..+....|.
T Consensus 55 ~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----------------------~htv~~th~---------- 101 (1416)
T KOG3617|consen 55 DVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----------------------THTVVETHP---------- 101 (1416)
T ss_pred ccccceehhhhccChHHHHHhhccccceeEEEecCCce-----------------------eeeeccCCC----------
Confidence 44444456789999998899999999999999987654 223445566
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEcc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~ 144 (461)
.+|..+.|| ++|..++++..-|.|.+|...
T Consensus 102 --a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 102 --APIQGLDWS--HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --CCceeEEec--CCCCeEEEcCCCceeEEEEee
Confidence 789999999 568899999999999999876
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.36 E-value=0.0095 Score=58.85 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=70.7
Q ss_pred EEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
.+.| +++.+..||.+........... ..........|++-+.+| .||+|+.+|.||+||-- +... ...+.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~---k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~A---KT~lp 615 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQS---KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRA---KTALP 615 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccc---cccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhh---hhcCC
Confidence 4456 8999999999965422111001 111244567888888887 89999999999999942 2211 12222
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEcc
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~ 370 (461)
+...+|.+|..+.||++|++..+..+.|++..
T Consensus 616 ------------~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 616 ------------GLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ------------CCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 22378999999999999999888889888864
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.36 E-value=0.1 Score=46.89 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=71.1
Q ss_pred ccceeeEEeCCCCCE-EEEe----CCCe-EEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe----
Q 012535 233 DYHINSISNNSDGET-FISA----DDLR-INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---- 302 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~-l~~~----~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---- 302 (461)
...+.-+.|+|.... |+-| .+.. -+||-+++.......+ + -......+..=-|.|+|..+...+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v--~---~~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV--H---RRMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES--S------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee--e---cCCCCcccccccccCCCCEEEEEeecCCC
Confidence 355667888887544 4444 2332 3667665444333221 1 1112345555668999944443333
Q ss_pred cCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEE-ecC--C--------------eEE
Q 012535 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY--M--------------TLK 365 (461)
Q Consensus 303 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s-~~d--~--------------~i~ 365 (461)
.+..|.-+|+.++... ..... .....+.-++||++++. |+| . -|+
T Consensus 262 ~~~~i~~~d~~t~~~~----~~~~~--------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERR----RLMEM--------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp --EEEEEE-TTT--EE----EEEEE---------------SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred CceEEEeeCCCCCCce----EEEeC--------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 2345666777766431 11111 13445666789998886 544 1 345
Q ss_pred EEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEE-EecCCCeEEEEecC
Q 012535 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCS 428 (461)
Q Consensus 366 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~ 428 (461)
++++.. .....+..|...-.-+.. +.+.. --...|+|||++++ ++...|...||=++
T Consensus 324 ~~~~~~--~~~~~l~~h~~sw~v~~~--~~q~~--hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 324 LFDVEA--GRFRKLARHDTSWKVLDG--DRQVT--HPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEETTT--TEEEEEEE-------BTT--BSSTT------EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred Eecccc--CceeeeeeccCcceeecC--CCccC--CCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 566653 333344444321100000 00000 02689999999766 45567777776443
No 350
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.018 Score=52.74 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=65.9
Q ss_pred Ee-CCCeEEEEEccCCCCc-eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 250 SA-DDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
.| +++.|.-||.+-.... ......+ .+ .......|.+-..+| ++++|+.+|.||+||- .+... ...+++
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~k--qy-~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A---KTAlPg 469 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSK--QY-STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA---KTALPG 469 (644)
T ss_pred EeecCCceEEecccccCcceeeeeecc--cc-ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh---hhcccc
Confidence 35 7888888998854432 1111111 11 123445677777666 8999999999999996 33211 122222
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEcc
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~ 370 (461)
...+|..+..+.+|++|++..+..+.+-++.
T Consensus 470 ------------LG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 ------------LGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ------------cCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2368999999999999999888788887765
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.31 E-value=0.15 Score=47.61 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=28.3
Q ss_pred CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 282 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
.+++..++.||++ +++|.-..+|.+.+....-.+
T Consensus 216 ~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 216 DGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred CCCeEEEEECCCC-CEEEEEECCCCEEEEECcccc
Confidence 4679999999999 899999999999888765443
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.22 E-value=0.0015 Score=38.92 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=29.1
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcC
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT 65 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~ 65 (461)
-...|.+++|+|..++||.|+.+|.|.|+++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999984
No 353
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.22 E-value=0.22 Score=47.87 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=23.3
Q ss_pred cEEEEEeCCCeEEEEEccCCceeEEeee
Q 012535 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (461)
Q Consensus 127 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 154 (461)
..++.++.++.|.-+|.++++..-....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5888899999999999999987766554
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.22 E-value=0.011 Score=42.42 Aligned_cols=102 Identities=10% Similarity=0.136 Sum_probs=58.2
Q ss_pred eEEEEEeecCC--CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 115 INKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 115 v~~v~~~p~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
|++|++..... ...|++|+.|..|++|+-+. +........ .+. ++.-...++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e~~---------~v~-------~L~~~~~~~-------- 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITETD---------KVT-------SLCSLGGGR-------- 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEeccc---------ceE-------EEEEcCCCE--------
Confidence 77788775221 26899999999999998542 233222211 122 333334444
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeC-CC--C-CEEEEe-CCCeEEE
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SD--G-ETFISA-DDLRINL 258 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~--~-~~l~~~-~d~~i~i 258 (461)
++.+..+|+|-+|+ - . .+..-......+.++++. .+ | .-|++| ++|.|.+
T Consensus 56 -----F~Y~l~NGTVGvY~-~---~-------~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 56 -----FAYALANGTVGVYD-R---S-------QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -----EEEEecCCEEEEEe-C---c-------ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 48899999999998 1 0 011101122335566543 22 2 357788 8888753
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.17 E-value=0.0011 Score=37.54 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=23.3
Q ss_pred eeEEEecCCCEEEEecCCCeEEEEe
Q 012535 402 FECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
.++.|++++.++++++.|+.+++|+
T Consensus 16 ~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 16 TSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred eEEEECCCCCEEEEecCCCeEEEcC
Confidence 4899999999999999999999996
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.23 Score=46.33 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=30.7
Q ss_pred cceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec
Q 012535 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
+++..+++||+|++||.-. +|.+.+...+. .+.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 5799999999999999865 49999988764 5555555444
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0037 Score=58.18 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=67.9
Q ss_pred cceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCC
Q 012535 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (461)
..+..+.|+|.-.++|.+. +|.|-+..+. .+.+-++..|...+. .+++|.|||++||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence 4688999999988999887 4888888876 455556655554442 2899999999999999999
Q ss_pred eEEEEecCCCCccceeeccCCCCCccccc
Q 012535 421 LFRVFGCSEGSAESTTLEASKNPMSLFLH 449 (461)
Q Consensus 421 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 449 (461)
.|++-|+.++.......-....++.+...
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIW 113 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeec
Confidence 99999999986654433333344444433
No 358
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.99 E-value=0.0028 Score=37.83 Aligned_cols=32 Identities=19% Similarity=0.567 Sum_probs=27.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK 146 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~ 146 (461)
..|.+++|+|. ..+++.++.+|.|.+++++..
T Consensus 12 ~~v~~~~w~P~--mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPT--MDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CcEEEEEECCC--CCEEEEEECCCeEEEEECCCc
Confidence 56999999965 459999999999999998543
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.99 E-value=0.064 Score=38.63 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=45.5
Q ss_pred eEEEEE---eCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC
Q 012535 285 ITSAEF---HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (461)
Q Consensus 285 v~~v~~---~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d 361 (461)
|+++++ ..+|.+.|++|+.|..||+|+-..- +..+... ..|++++-...+++.++-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~------~~Ei~e~-------------~~v~~L~~~~~~~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI------VAEITET-------------DKVTSLCSLGGGRFAYALAN 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE------EEEEecc-------------cceEEEEEcCCCEEEEEecC
Confidence 444544 4466689999999999999986532 3444433 56888888777655554456
Q ss_pred CeEEEEEcc
Q 012535 362 MTLKLWDIN 370 (461)
Q Consensus 362 ~~i~vwd~~ 370 (461)
|+|-+|+-.
T Consensus 63 GTVGvY~~~ 71 (111)
T PF14783_consen 63 GTVGVYDRS 71 (111)
T ss_pred CEEEEEeCc
Confidence 888888753
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.95 E-value=0.24 Score=43.55 Aligned_cols=243 Identities=14% Similarity=0.106 Sum_probs=119.9
Q ss_pred CCCcEEEEEeCCCeEEEEEcc-CCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCcccccc
Q 012535 124 ANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (461)
Q Consensus 124 ~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 202 (461)
..++.|+.|+.+| +.+++.. ........... .|. .+...++-..+ ..-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----------~I~-------ql~vl~~~~~l-------------lvL 53 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----------SIT-------QLSVLPELNLL-------------LVL 53 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----------eEE-------EEEEecccCEE-------------EEE
Confidence 3467899999999 8899882 22222222211 122 34444544442 222
Q ss_pred CCCcEEeeeeecccCcccccee----eE---eeecccccceeeEE---eCCCCCEEEEeCCCeEEEEEccCCCCce-eee
Q 012535 203 GVSSLRLPVVVTSQETNLVAGC----RR---IYAHAHDYHINSIS---NNSDGETFISADDLRINLWNLEISNQSF-NIV 271 (461)
Q Consensus 203 ~~~~i~i~~~~~~~~~~~~~~~----~~---~~~~~~~~~v~~i~---~~~~~~~l~~~~d~~i~iwd~~~~~~~~-~~~ 271 (461)
.|+.+.+++ +........... .. .........+..++ -......|+.+....|.+|........+ ...
T Consensus 54 sd~~l~~~~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 54 SDGQLYVYD-LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred cCCccEEEE-chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 349999998 544433321110 00 00012223444444 1223455666656689998887532221 110
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
+ . -...+.+.+++|.+ +.++.|..++ ..+.|+.++.... +....... ...........++..+...
T Consensus 133 --k--e-~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~--l~~~~~~~--~~~~~~~~~~~~~~~~~~~- 198 (275)
T PF00780_consen 133 --K--E-ISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSE--LLDPSDSS--SSFKSRNSSSKPLGIFQLS- 198 (275)
T ss_pred --E--E-EEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceE--EeCccCCc--chhhhcccCCCceEEEEeC-
Confidence 0 1 11457789999994 4577776544 7889998765311 11111100 0000000111234444443
Q ss_pred CCCEEEEecCCeEEEEEccCCCCCee--EEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 352 NGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 352 ~g~~l~s~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
++.+|++.++ .-.+.|.. |++.+ .++-...+ .++++ ...+|+..+. +.|.||++.+
T Consensus 199 ~~e~Ll~~~~-~g~fv~~~--G~~~r~~~i~W~~~p----------------~~~~~--~~pyli~~~~-~~iEV~~~~~ 256 (275)
T PF00780_consen 199 DNEFLLCYDN-IGVFVNKN--GEPSRKSTIQWSSAP----------------QSVAY--SSPYLIAFSS-NSIEVRSLET 256 (275)
T ss_pred CceEEEEecc-eEEEEcCC--CCcCcccEEEcCCch----------------hEEEE--ECCEEEEECC-CEEEEEECcC
Confidence 4577776543 33333443 44333 22211111 14555 3457777666 5599999999
Q ss_pred CCccc
Q 012535 430 GSAES 434 (461)
Q Consensus 430 ~~~~~ 434 (461)
++..+
T Consensus 257 ~~lvQ 261 (275)
T PF00780_consen 257 GELVQ 261 (275)
T ss_pred CcEEE
Confidence 97663
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.2 Score=42.57 Aligned_cols=255 Identities=11% Similarity=0.085 Sum_probs=127.6
Q ss_pred eEEEEEeecCCCcEEEEEeCCCe-EEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKT-IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
-..|+|+|.. ..-++.+-.-|+ ..++|..+.+...+.......+ .+ . -=.|+|+|.++ +. .
T Consensus 70 ~Hgi~~~p~~-~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH-------fy-G-----HGvfs~dG~~L---YA-T 131 (366)
T COG3490 70 GHGIAFHPAL-PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH-------FY-G-----HGVFSPDGRLL---YA-T 131 (366)
T ss_pred cCCeecCCCC-cceEEEEecCCceEEEECCCCCcCcEEEecccCce-------ee-c-----ccccCCCCcEE---Ee-e
Confidence 4457777643 345566655554 4678887766544433221110 00 0 12789999985 10 0
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEE--------EccCCC
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW--------NLEISN 265 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iw--------d~~~~~ 265 (461)
.+|+ -...|.|-+|| .... ...... +..|.-....+.+.+||+.++.+. |-|..- ++++.+
T Consensus 132 Endf---d~~rGViGvYd-~r~~-----fqrvgE-~~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lNldsMe 200 (366)
T COG3490 132 ENDF---DPNRGVIGVYD-AREG-----FQRVGE-FSTHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELNLDSME 200 (366)
T ss_pred cCCC---CCCCceEEEEe-cccc-----cceecc-cccCCcCcceeEEecCCcEEEEeC-CceecccccCccccchhhcC
Confidence 0010 23447899998 3211 111122 267777888899999999998763 223332 333333
Q ss_pred CceeeeccC------CCCCC--CCCcceEEEEEeCCCCCeEEEEecCCeE-----EEEECCCcccccccccccccccCCC
Q 012535 266 QSFNIVDVK------PANME--DLTEVITSAEFHPTHCNMLAYSSSKGSI-----RLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 266 ~~~~~~~~~------~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
....+++.. ..++. -+...|..++..++| ...+.+-..|-- -+=-.+.++. +.-+...
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~----l~~~~~p---- 271 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEP----LEFLDLP---- 271 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCc----CcccCCC----
Confidence 333333210 01222 244567888888887 544433332210 0000011111 1111110
Q ss_pred ccccccccccceeEEEEccCCCEEEEec-C-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
........+.|-+++.+.+..+++..+ . +...+||..+ +..+..-.-.. +.-.-+..
T Consensus 272 -ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~a~l~d-------------------aaGva~~~ 330 (366)
T COG3490 272 -EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSEAALPD-------------------AAGVAAAK 330 (366)
T ss_pred -HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC-CcEEecccccc-------------------cccceecc
Confidence 011112235677888887666666554 4 7889999997 66554322111 11122334
Q ss_pred CEEEEecCCCeEEEEecC
Q 012535 411 GRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 411 ~~l~s~~~dg~i~iw~~~ 428 (461)
.-++..+.+|.+.++.-.
T Consensus 331 ~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 331 GGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred CceEEecCCceEEecccc
Confidence 445666777888887443
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.91 E-value=0.15 Score=46.11 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=80.9
Q ss_pred CeEEEEEccCC-C--CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc-ccccccccccccc
Q 012535 254 LRINLWNLEIS-N--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA-LCDTHSKLFEEQE 329 (461)
Q Consensus 254 ~~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 329 (461)
|.|.++++... . ...+.+ ......++|++++-- .+ + |++ +.++.|.+|++...+ ... ...+..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~-~~g~~l~v~~l~~~~~l~~--~~~~~~~- 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVV-AVGNKLYVYDLDNSKTLLK--KAFYDSP- 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEE-EETTEEEEEEEETTSSEEE--EEEE-BS-
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEE-eecCEEEEEEccCcccchh--hheecce-
Confidence 88999999863 1 122211 122356788888777 33 4 443 345889999998776 311 1111111
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
..+.++... +.+++.|+- ..+.++.++.....+..+....... .++++.+-+
T Consensus 130 ------------~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l~ 182 (321)
T PF03178_consen 130 ------------FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFLV 182 (321)
T ss_dssp ------------SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE-
T ss_pred ------------EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEec
Confidence 235555544 568888874 8888886654233344443322211 235788886
Q ss_pred CCCEEEEecCCCeEEEEecCC
Q 012535 409 DGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~ 429 (461)
+++.++.+..+|.+.++....
T Consensus 183 d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-S
T ss_pred CCcEEEEEcCCCeEEEEEECC
Confidence 777999999999999999874
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.0069 Score=60.10 Aligned_cols=103 Identities=12% Similarity=0.189 Sum_probs=75.5
Q ss_pred CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCC
Q 012535 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG 374 (461)
Q Consensus 296 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~ 374 (461)
..++.|+..|.+-..|++..- .+ .. .+... .++|++++|+.+|+.++.|- +|.|.+||+.+ ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL-~~--~~--~ne~v----------~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL-GP--LH--QNERV----------QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc-ch--hh--cCCcc----------CCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 578889999999888887641 10 01 11111 17899999999999999985 69999999996 89
Q ss_pred CeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+++.+..|..+... |..+.+..++..+.++..-|. +|++.
T Consensus 164 ~l~~i~e~~ap~t~------------vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTG------------VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceeeeeecCCccce------------EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 99999888766532 235666777777888877776 66665
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.37 Score=44.62 Aligned_cols=200 Identities=11% Similarity=0.076 Sum_probs=122.9
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C--
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-- 252 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-- 252 (461)
.++.++.+..+ ++....++.|.+.| . .. .........+. ....++++++++.+..+ .
T Consensus 78 ~i~v~~~~~~v-----------yv~~~~~~~v~vid-~---~~---~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~ 137 (381)
T COG3391 78 GVAVNPAGNKV-----------YVTTGDSNTVSVID-T---AT---NTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGN 137 (381)
T ss_pred ceeeCCCCCeE-----------EEecCCCCeEEEEc-C---cc---cceeeEeeecc--CCceEEECCCCCEEEEEeccc
Confidence 66777777753 35555678888877 2 11 11111211222 56789999999888776 3
Q ss_pred -CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccc-ccccccccccC
Q 012535 253 -DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD-THSKLFEEQEA 330 (461)
Q Consensus 253 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~ 330 (461)
++.+.+.|..+......+. . ...+ ..++++|++....++-..++.|.+.|........ .........
T Consensus 138 ~~~~vsvid~~t~~~~~~~~-------v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-- 206 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIP-------V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-- 206 (381)
T ss_pred CCceEEEEeCCCCeEEEEEe-------c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC--
Confidence 5788888877555443311 1 1122 8999999994455555679999999977655320 000011111
Q ss_pred CCccccccccccceeEEEEccCCCEEEEecC----CeEEEEEccCCCCCeeE-EeeccCccccccccccCCCccceeeEE
Q 012535 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d----~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
..-..+.++|+|.++....+ +.+...|..+ +..... ........ ..+.
T Consensus 207 -----------~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~---------------~~v~ 259 (381)
T COG3391 207 -----------TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGAP---------------RGVA 259 (381)
T ss_pred -----------CCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCCC---------------Ccee
Confidence 33567899999998887543 4788888775 333332 11111111 2788
Q ss_pred EecCCCEEEEec-CCCeEEEEecCCCCcc
Q 012535 406 LSGDGGRVATGS-YSNLFRVFGCSEGSAE 433 (461)
Q Consensus 406 ~s~~~~~l~s~~-~dg~i~iw~~~~~~~~ 433 (461)
.+|+|+++.+.. ..+.+.+-|..+....
T Consensus 260 ~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 260 VDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 999999888774 4488888888876544
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.85 E-value=0.34 Score=43.72 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=68.5
Q ss_pred cccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
..++|.+++-- +..|+++.++.|.+|++...+..... ........+.++... + +++++|.....+.++.
T Consensus 87 ~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~------~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 87 VKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKK------AFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLR 155 (321)
T ss_dssp ESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEE------EEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEE
T ss_pred ecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhh------heecceEEEEEEecc--c-cEEEEEEcccCEEEEE
Confidence 35678877744 44577776789999999866523221 111122355666555 4 6888998888888875
Q ss_pred CCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEcc
Q 012535 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (461)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~ 370 (461)
.+..... +..+..... ...++++.|-+++..+++++. |.+.++...
T Consensus 156 ~~~~~~~---l~~va~d~~----------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 156 YDEENNK---LILVARDYQ----------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTTE----EEEEEEESS-----------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEccCCE---EEEEEecCC----------CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 4431110 111111111 146889999877677777774 999999886
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.069 Score=45.15 Aligned_cols=119 Identities=12% Similarity=0.126 Sum_probs=62.0
Q ss_pred cccceeeEEeCCCCCEEEEe-CCCe----EEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cCC
Q 012535 232 HDYHINSISNNSDGETFISA-DDLR----INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG 305 (461)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~-~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg 305 (461)
+.-.|+.++..++|...+.+ ..|. --+--.......++.+++.+.........|-+|+.+-+. .+++..+ ..+
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCCC
Confidence 33456777777777776654 2211 111111122333333332222222345677888888766 4554444 455
Q ss_pred eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEcc
Q 012535 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~ 370 (461)
...+||..++.... .-.. .....++-. .+-+.++..+|.+.++.-.
T Consensus 303 ~~vi~da~tG~vv~----~a~l--------------~daaGva~~-~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 303 RAVIWDAATGAVVS----EAAL--------------PDAAGVAAA-KGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred eEEEEEcCCCcEEe----cccc--------------cccccceec-cCceEEecCCceEEecccc
Confidence 67899999997532 1111 112233322 3446666667888888543
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.78 E-value=0.21 Score=43.93 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=88.0
Q ss_pred CCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccc
Q 012535 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (461)
Q Consensus 243 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (461)
..++.|+.| ++| +.+++........++. ....|..+...|+- +.|++- .|+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhcccccc
Confidence 357788888 777 8999984333333321 23349999999976 555544 3599999999775432110
Q ss_pred ccccccccCCCccccccccccceeEEE---EccCCCEEEEecCCeEEEEEccCCC----CCeeEEeeccCcccccccccc
Q 012535 322 SKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSRDYMTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYE 394 (461)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~v~~l~---~s~~g~~l~s~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~ 394 (461)
. ......... ..........+...+ -.....+|+.+...+|.+|...... +..+.+......
T Consensus 73 ~-~~~~~~~~~-~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~--------- 141 (275)
T PF00780_consen 73 A-PLAFPKSRS-LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP--------- 141 (275)
T ss_pred c-ccccccccc-ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc---------
Confidence 0 000000000 000000012344333 2224456777777899999887421 234444433322
Q ss_pred CCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..++|. ++.|+.|..+ ...+.|+.++...
T Consensus 142 -------~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~ 170 (275)
T PF00780_consen 142 -------SSIAFL--GNKICVGTSK-GFYLIDLNTGSPS 170 (275)
T ss_pred -------EEEEEe--CCEEEEEeCC-ceEEEecCCCCce
Confidence 378888 6677777654 4788899977554
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.46 E-value=0.0081 Score=54.95 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=64.4
Q ss_pred eCCCCCeEEEE---------ecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC
Q 012535 291 HPTHCNMLAYS---------SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (461)
Q Consensus 291 ~p~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d 361 (461)
|||+ ++++.. +..+.+.+||+.+++. ..+.... ..+....|||+|++++-..+
T Consensus 1 S~d~-~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~-----~~l~~~~------------~~~~~~~~sP~g~~~~~v~~ 62 (353)
T PF00930_consen 1 SPDG-KFVLFATNYTKQWRHSFKGDYYIYDIETGEI-----TPLTPPP------------PKLQDAKWSPDGKYIAFVRD 62 (353)
T ss_dssp -TTS-SEEEEEEEEEEESSSEEEEEEEEEETTTTEE-----EESS-EE------------TTBSEEEE-SSSTEEEEEET
T ss_pred CCCC-CeEEEEECcEEeeeeccceeEEEEecCCCce-----EECcCCc------------cccccceeecCCCeeEEEec
Confidence 5676 555543 2346789999998764 2222211 56889999999999999988
Q ss_pred CeEEEEEccCCCCCeeEEeecc--Cccccccc-cccCCCccceeeEEEecCCCEEEEec-CCCeEEEEec
Q 012535 362 MTLKLWDINMDSGPVATFQVHE--HLRPKLCD-LYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGC 427 (461)
Q Consensus 362 ~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~ 427 (461)
+.|.+++... + ....++... .......+ +|....+..-..+-||||+++||... ++..|..+.+
T Consensus 63 ~nly~~~~~~-~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 63 NNLYLRDLAT-G-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp TEEEEESSTT-S-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred CceEEEECCC-C-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 9999999875 3 222222211 11111111 11111011113788999999988765 3344444433
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=0.013 Score=47.73 Aligned_cols=107 Identities=11% Similarity=0.047 Sum_probs=64.8
Q ss_pred CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccCCCC
Q 012535 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG 374 (461)
Q Consensus 296 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~ 374 (461)
.-+++|+.+|.|.+|........ ...+.... ......+.-..++.+..++ .+|.|+.|++.. .+
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~---~d~~~s~~-----------e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k 135 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAH---SDRVCSGE-----------ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NK 135 (238)
T ss_pred ceEEeecccceEEEecCCccchH---HHhhhccc-----------ccceeccccccccceeEEeccCCceeeecccc-Cc
Confidence 67999999999999987632110 01111110 0112222222244455554 579999999985 67
Q ss_pred CeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEe--cCCCeEEEEecCCCC
Q 012535 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCSEGS 431 (461)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~~ 431 (461)
.+...-.|.... +..+..+..+++++.+ |.|..++.|++..-.
T Consensus 136 ~~g~~g~h~~~~--------------~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 136 VLGYVGQHNFES--------------GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eeeeeccccCCC--------------cceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 666666665211 1245566677788888 888899999987543
No 370
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.38 Score=44.50 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=100.1
Q ss_pred ceeeEEeCCCCCEEEE-e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec---CCeEEE
Q 012535 235 HINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRL 309 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~i 309 (461)
....+++++.+..+.. . .++.|.+.|..+......+ ........++++|++ ..+..+.. ++++.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~---------~vG~~P~~~~~~~~~-~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI---------PVGLGPVGLAVDPDG-KYVYVANAGNGNNTVSV 144 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---------eeccCCceEEECCCC-CEEEEEecccCCceEEE
Confidence 3456788888775444 4 6899999997644433221 112266799999998 55555444 688889
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCee-----EEeec
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVH 382 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~-----~~~~~ 382 (461)
.|..+.... .+..... .+ ..++++|+|..++..+ ++.|.+.|... ..... .....
T Consensus 145 id~~t~~~~----~~~~vG~------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~ 206 (381)
T COG3391 145 IDAATNKVT----ATIPVGN------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVG 206 (381)
T ss_pred EeCCCCeEE----EEEecCC------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccC
Confidence 998877652 2222111 23 7899999999888765 59999999764 22221 11111
Q ss_pred cCccccccccccCCCccceeeEEEecCCCEEEEecC---CCeEEEEecCCCCcc
Q 012535 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAE 433 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~ 433 (461)
..+ ..+.++++|.++..... ++.+...|..++...
T Consensus 207 ~~P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 207 TGP----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred CCC----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 211 27899999996655433 368888888877544
No 371
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.52 Score=40.43 Aligned_cols=215 Identities=12% Similarity=0.110 Sum_probs=114.1
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
++.|+|+.+.+ ++....+.-.++= ....+..++....--.....|.+..++++.++- .++
T Consensus 90 ~LTynp~~rtL------------Fav~n~p~~iVEl-------t~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~ 150 (316)
T COG3204 90 SLTYNPDTRTL------------FAVTNKPAAIVEL-------TKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDR 150 (316)
T ss_pred ceeeCCCcceE------------EEecCCCceEEEE-------ecCCceEEEecccccCChhHeEEecCCEEEEEehhcc
Confidence 88999999986 5555555444432 122233333211112344567777777777776 699
Q ss_pred eEEEEEccCCCCceeeec--cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 255 RINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
.+.++.+........... +........+.....++|+|.+ ..|..+-...=+.||...... ..+..+....
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~~~~ 223 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHASLD 223 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCC------cccccccccC
Confidence 999988875543332211 1111222225567899999998 677777777767777665332 1111111000
Q ss_pred ccccccccccceeEEEEcc-CCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 333 TRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~-~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
+.....-.-..|.++.|++ .+.+|+-+.+ +.+.-.|.. ++++..+.-+.+...-. ..+..--.++..++|
T Consensus 224 ~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g~~gL~------~dipqaEGiamDd~g 295 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKGNHGLS------SDIPQAEGIAMDDDG 295 (316)
T ss_pred cccccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEEeccCCCCCc------ccCCCcceeEECCCC
Confidence 0000000114688899997 4455555654 777777775 66666665554432100 001101156676666
Q ss_pred CEEEEecCCCeEEEE
Q 012535 411 GRVATGSYSNLFRVF 425 (461)
Q Consensus 411 ~~l~s~~~dg~i~iw 425 (461)
.+.+ .|+-+..+.|
T Consensus 296 ~lYI-vSEPnlfy~F 309 (316)
T COG3204 296 NLYI-VSEPNLFYRF 309 (316)
T ss_pred CEEE-EecCCcceec
Confidence 5333 3444544444
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.34 E-value=0.53 Score=46.07 Aligned_cols=126 Identities=11% Similarity=0.110 Sum_probs=65.1
Q ss_pred eeeEEeCCCCCEEEEeCCC--eEEEEEccCCCCceeeeccCCCCCC-CCCcceEEEEEeCCCCCeEEEEecCCeEEE---
Q 012535 236 INSISNNSDGETFISADDL--RINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRL--- 309 (461)
Q Consensus 236 v~~i~~~~~~~~l~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i--- 309 (461)
...-.|+|+|..+++..|+ .+++.+.....+.. ...+...... .....|..+.|+||| ..++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~-~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA-RTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEE-EEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 6778899998888776322 23333322111221 1111110111 235679999999999 6666544 467766
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCC
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 375 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~ 375 (461)
-....+.........+.. +-...+.++.|..++.+++...++...+|.+..++..
T Consensus 476 vr~~~G~~~l~~~~~l~~-----------~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 476 EQTEDGQYALTNPREVGP-----------GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EeCCCCceeecccEEeec-----------ccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence 333333210000011111 1113368899999998665544444455666543443
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.34 E-value=0.51 Score=39.54 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=64.1
Q ss_pred CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCC
Q 012535 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (461)
Q Consensus 47 g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~ 126 (461)
..+++.|+..+.+.--|..+++.. ..+.+ + .+|.+-+.. -|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~---------------------We~il-g--------------~RiE~sa~v---vg 63 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI---------------------WEAIL-G--------------VRIECSAIV---VG 63 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE---------------------eehhh-C--------------ceeeeeeEE---EC
Confidence 458888999999888888877642 11111 1 224443333 15
Q ss_pred cEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCc
Q 012535 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (461)
Q Consensus 127 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 206 (461)
+.++.|...|.+.+.++++|.....+..... +.. .....+++..+ ..++.|+.
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~---------vk~------~a~~d~~~glI------------ycgshd~~ 116 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILET---------VKV------RAQCDFDGGLI------------YCGSHDGN 116 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehhh---------hcc------ceEEcCCCceE------------EEecCCCc
Confidence 5899999999999999999854443332110 100 22445667764 89999999
Q ss_pred EEeee
Q 012535 207 LRLPV 211 (461)
Q Consensus 207 i~i~~ 211 (461)
....|
T Consensus 117 ~yalD 121 (354)
T KOG4649|consen 117 FYALD 121 (354)
T ss_pred EEEec
Confidence 99888
No 374
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.30 E-value=0.13 Score=42.91 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=78.6
Q ss_pred EEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEE
Q 012535 289 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLW 367 (461)
Q Consensus 289 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vw 367 (461)
...++...+++.|+..+.+.-.|..++.+.++.+.. ..+.+-+.- -|.+++.|-. |.+++.
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-----------------VRIECSAIV-VGDFVVLGCYSGGLYFL 78 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehhhC-----------------ceeeeeeEE-ECCEEEEEEccCcEEEE
Confidence 344555478899999999999999999875432211 112221111 4667888875 999999
Q ss_pred EccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 368 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 368 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+.++ +.....+...+... ......+++..+..|+.|+..+.-|.++....
T Consensus 79 ~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 79 CVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred Eecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 9997 77777776554432 15667789999999999999999999876544
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.28 E-value=0.37 Score=41.63 Aligned_cols=155 Identities=11% Similarity=0.098 Sum_probs=86.8
Q ss_pred ceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE-
Q 012535 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID- 311 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd- 311 (461)
.+.+.+++++++.++.. .++.-.+|-.......... + ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 67889999999887764 2444444444433333221 1 23367888999997 6666666666666663
Q ss_pred CCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec----CCeEEEEEccCCCCC-eeEEeeccCcc
Q 012535 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEHLR 386 (461)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~----d~~i~vwd~~~~~~~-~~~~~~~~~~~ 386 (461)
...+... ......... ...|..+.+||||..++.-. ++.|.+--+..+..- ...+.......
T Consensus 95 ~~~g~~~---~~~v~~~~~----------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 95 SASGTGE---PVEVDWPGL----------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cCCCcce---eEEeccccc----------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 3333221 111111110 02699999999999888632 478888766532211 11111110000
Q ss_pred ccccccccCCCccceeeEEEecCCCEEEEecCCC
Q 012535 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (461)
......+.+++|.+++.+++.+...+
T Consensus 162 --------~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 162 --------PPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred --------ccccCcceeeeecCCCEEEEEeCCCC
Confidence 00112345899999998877665443
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.27 E-value=0.48 Score=43.26 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=51.4
Q ss_pred CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEe--CCCCCeEEEEecCCeEEEEEC-CCccccccccccccccc
Q 012535 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQE 329 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~ 329 (461)
..++.+||+.+.+ ..+.++ +......+..|.|. |+...-++.+....+|..|-- ..++-..+.+..+....
T Consensus 221 G~~l~vWD~~~r~-~~Q~id-----Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 221 GHSLHVWDWSTRK-LLQTID-----LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp --EEEEEETTTTE-EEEEEE-----S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cCeEEEEECCCCc-EeeEEe-----cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 4689999998544 444433 22222345566664 444223444444555554433 33321111122221111
Q ss_pred -----CCCccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeE
Q 012535 330 -----APGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVAT 378 (461)
Q Consensus 330 -----~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~ 378 (461)
.+.-...+..-..-|+.+..|.|.++|..+. .|.|+.||+..+.++..+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 0000111222235689999999999999976 599999999865555433
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=0.012 Score=47.91 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEE-EEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-AEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
+..+++| .+|.|.+|........... .......|-+ |.-..++ .+..+++.||.||.|++.-.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 4556777 8999999988743333221 1112222322 2222333 5889999999999999877653
No 378
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.09 E-value=0.29 Score=48.83 Aligned_cols=97 Identities=9% Similarity=0.086 Sum_probs=59.2
Q ss_pred cceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccc----cc-cccccCCCccceeeEEEecC---CCEE
Q 012535 342 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRP----KL-CDLYENDSIFDKFECCLSGD---GGRV 413 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~v~~~~~s~~---~~~l 413 (461)
-.|..+.++|+|++|+..+...|.|-.+......-..+++....+. .+ ..++.++....|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3699999999999999877656666666421000111111111000 00 11122233335678999997 4789
Q ss_pred EEecCCCeEEEEecCCCCccceeec
Q 012535 414 ATGSYSNLFRVFGCSEGSAESTTLE 438 (461)
Q Consensus 414 ~s~~~dg~i~iw~~~~~~~~~~~~~ 438 (461)
+.-+.|+.+|+||+...+....++.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999999987665545544
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.08 E-value=1.3 Score=41.68 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCEEEEe-ecCC----cEEEEEcCCCC
Q 012535 37 IISAIEFDKSGDHLATG-DRGG----RVVLFERTDTR 68 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg-~~dg----~i~iw~~~~~~ 68 (461)
.+...++||||++||.+ +..| .|+++|+.+++
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~ 161 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK 161 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc
Confidence 44578899999998876 3444 59999998875
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.17 Score=46.75 Aligned_cols=118 Identities=12% Similarity=0.020 Sum_probs=70.1
Q ss_pred eEEEEEeecCCCc-----EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 115 INKIRWCQSANSA-----LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 115 v~~v~~~p~~~~~-----~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
|+-+.+.|...+. .-++|-.|..|.-||.+-...-.+...+.+ .+..+.-. +|.+-..+|.
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k---qy~~k~nF------sc~aTT~sG~----- 443 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK---QYSTKNNF------SCFATTESGY----- 443 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc---cccccccc------ceeeecCCce-----
Confidence 6777777644333 345566888899999873221111111111 00001000 0333334444
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEcc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLE 262 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~ 262 (461)
+++|+.+|.|++|| . .....++.+.+-..+|..|..+.+|+++++..+..+.+.++.
T Consensus 444 --------IvvgS~~GdIRLYd----r----i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 --------IVVGSLKGDIRLYD----R----IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred --------EEEeecCCcEEeeh----h----hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 49999999999999 1 112222334677789999999999999988777777777765
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.04 E-value=1.3 Score=41.58 Aligned_cols=115 Identities=15% Similarity=0.244 Sum_probs=67.5
Q ss_pred ceeeEEeCCCCCEEEEe-C-C----CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC---
Q 012535 235 HINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--- 305 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--- 305 (461)
.+...+++|++++++.+ + . ..|+++|+++++..... +. ......+.|.+++ +.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~--~~~~~~~~W~~d~-~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IE--NPKFSSVSWSDDG-KGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EE--EEESEEEEECTTS-SEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------cc--ccccceEEEeCCC-CEEEEEEeCcccc
Confidence 34467889999999875 2 3 45999999976433221 11 1112349999998 5555554333
Q ss_pred --------eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEe--c--C-CeEEEEEccC
Q 012535 306 --------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--Y-MTLKLWDINM 371 (461)
Q Consensus 306 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~--~--d-~~i~vwd~~~ 371 (461)
.|+.|++.+..... ...++..... .....+..++|+++|+.. + + ..+++.|+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSED--ELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG---EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cccCCCCcEEEEEECCCChHhC--eeEEeecCCC----------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 37777776654321 1233332211 125678899999998863 2 3 4677878764
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.81 E-value=1.2 Score=43.68 Aligned_cols=111 Identities=10% Similarity=0.148 Sum_probs=54.7
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCe
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 255 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~ 255 (461)
.+.|+|||..+.+ +. ++.|.+--++............+....+-...+.++.|..++.+++...++.
T Consensus 452 sl~wSpDG~RiA~-----------i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~ 518 (591)
T PRK13616 452 ELQLSRDGVRAAM-----------II--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE 518 (591)
T ss_pred eEEECCCCCEEEE-----------EE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCC
Confidence 8899999998622 11 3566654422222221111111111122333467899999998664444343
Q ss_pred EEEEEccCCCCceeeeccCCCCCCC--CCcceEEEEEeCCCCCeEEEEecCCeEEE
Q 012535 256 INLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (461)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 309 (461)
..+|.+.-...... .+.. ....+..|+-++. -++....++.+.+
T Consensus 519 ~~v~~v~vDG~~~~-------~~~~~n~~~~v~~vaa~~~---~iyv~~~~g~~~l 564 (591)
T PRK13616 519 HPVWYVNLDGSNSD-------ALPSRNLSAPVVAVAASPS---TVYVTDARAVLQL 564 (591)
T ss_pred CceEEEecCCcccc-------ccCCCCccCceEEEecCCc---eEEEEcCCceEEe
Confidence 44454442222211 1122 2456677777763 3555566664443
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.80 E-value=0.53 Score=45.72 Aligned_cols=116 Identities=10% Similarity=0.125 Sum_probs=68.8
Q ss_pred eeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEe--CCCCCeEEEEecCCeEEEEEC
Q 012535 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~iwd~ 312 (461)
+.-+.-+.-++.-++- +...+.|||.+.....+.. .+ ...+.|..+.|. |++ +.+++.+..+.|.+|--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence 3344444444444444 5778999999865533321 22 356788999885 677 67777778888888854
Q ss_pred CC-----cccccccccccccccCCCccccccccc-cceeEEEEccCCCEEEEecCCeEEEEEcc
Q 012535 313 RQ-----SALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 313 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~g~~l~s~~d~~i~vwd~~ 370 (461)
.. .......++.+.. ..|+ .+|.+..|.++|.+++ |+.+.+.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i----------~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDI----------SSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEe----------ecCCCCCccceeEecCCeEEE-EeCCEEEEECCC
Confidence 21 1111111222211 1122 4689999999886554 445688888754
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=1.2 Score=38.23 Aligned_cols=179 Identities=9% Similarity=0.105 Sum_probs=99.0
Q ss_pred cccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEE
Q 012535 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 308 (461)
.+-...+.++.|+|+.+.|++. +...-.++ +.+.+.....+ .+.+. .....+++..++ ++.++--.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~Gdlirti-----PL~g~-~DpE~Ieyig~n-~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTI-----PLTGF-SDPETIEYIGGN-QFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEe-----ccccc-CChhHeEEecCC-EEEEEehhcceEE
Confidence 3445669999999999998887 44443343 33344444433 23332 224577888777 7777777788888
Q ss_pred EEECCCccccccccc-ccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCcc
Q 012535 309 LIDMRQSALCDTHSK-LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 386 (461)
Q Consensus 309 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~ 386 (461)
++.+........... .+.... ..........++|+|..+.|..+-+ +=+.||.+...... +..|....
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~-------~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~ 223 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGT-------TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVHASLD 223 (316)
T ss_pred EEEEcCCccEEeccceEEeccc-------cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccccccC
Confidence 887765532111000 111110 0001256889999998877777654 55666655421111 11121111
Q ss_pred c-cccccccCCCccceeeEEEecC-CCEEEEecCCCeEEEEecCCC
Q 012535 387 P-KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 387 ~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~ 430 (461)
. ....+ .+.+|.++.|++. +.+|+-+.+++.+.-.|....
T Consensus 224 ~~~~~~~----f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 224 PTADRDL----FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccccce----EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0 00001 1223457888864 566777778888887777754
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.65 E-value=1.5 Score=39.01 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=63.8
Q ss_pred cccccceeeEEeCCCCCEEEEe-C-CCeEEEEEccC-CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC-
Q 012535 230 HAHDYHINSISNNSDGETFISA-D-DLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG- 305 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg- 305 (461)
..+-...+.|+|||+++.|..+ . .+.|.-|++.. ........ ....+....+..-.++...+| .+-+++..+|
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~--~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~ 235 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR--GFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGG 235 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc--eEEEccCCCCCCCceEEeCCC-CEEEecccCCc
Confidence 3444566889999999999888 3 58888887762 11110000 000122234555677788887 5554444444
Q ss_pred eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc-cCCCEEEE
Q 012535 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA-RNGRHILS 358 (461)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~g~~l~s 358 (461)
.|.+|+.. +++ +..+..+. ..+++++|- |+.+.|+.
T Consensus 236 ~v~~~~pd-G~l----~~~i~lP~------------~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 236 RVVRFNPD-GKL----LGEIKLPV------------KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred eEEEECCC-CcE----EEEEECCC------------CCCccceEeCCCcCEEEE
Confidence 89999988 554 34444432 346777775 34455554
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.061 Score=53.81 Aligned_cols=103 Identities=16% Similarity=0.274 Sum_probs=65.9
Q ss_pred CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccc
Q 012535 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (461)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 322 (461)
.+..++.| +.|.+...|....-.... .-....++|++++|+.+| .+++.|-.+|.|.+||+..+.. +
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~-------~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~----l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLH-------QNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKI----L 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhh-------cCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcc----e
Confidence 34567777 788898888874311110 122246889999999999 9999999999999999998765 3
Q ss_pred cccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEc
Q 012535 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDI 369 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~ 369 (461)
+.+..+..+ + ..|-.+.+..++..+++++. |. +|.+
T Consensus 166 ~~i~e~~ap--------~-t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGAP--------V-TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCCc--------c-ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 444433311 1 22334444445555666554 54 4443
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.56 E-value=3 Score=41.91 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=54.5
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCC----------CC--ceeeeccCCCCC-CCCCcceEEEEEeCCC--CCeE
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEIS----------NQ--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML 298 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~v~~v~~~p~~--~~~l 298 (461)
..|..|.++|+|..++......|.|-.+... +. ..+.+.+....+ ......|..+.|+|.+ ...|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5788899999999988874455555554321 11 111111111112 2345688999999974 2789
Q ss_pred EEEecCCeEEEEECCCcc
Q 012535 299 AYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 299 ~~~~~dg~i~iwd~~~~~ 316 (461)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999997654
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.35 E-value=2.2 Score=40.56 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=43.3
Q ss_pred eEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCc
Q 012535 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (461)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (461)
.+.|+|....|+.- ....-.+++++.....++ . .+ ...+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-a-----Di-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-A-----DI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEE-E-----ec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 45688888777664 322223455553333222 1 12 256789999999999555555555556789986554
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.32 E-value=0.69 Score=45.00 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc--cCCCEEEE-ecC
Q 012535 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA--RNGRHILS-RDY 361 (461)
Q Consensus 285 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~g~~l~s-~~d 361 (461)
+.-+.-+.-+ +..++-+...++.|||.+.+.+.. -..|..+ +.|..+.|. |+|+.+++ |-.
T Consensus 32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~--~~~f~~~-------------~~I~dLDWtst~d~qsiLaVGf~ 95 (631)
T PF12234_consen 32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEY--EESFSED-------------DPIRDLDWTSTPDGQSILAVGFP 95 (631)
T ss_pred cceEeecccC-cEEEEECCCCEEEEEEcCCcEEEE--eeeecCC-------------CceeeceeeecCCCCEEEEEEcC
Confidence 3444444444 455555556689999999886422 2333222 679999997 58888777 546
Q ss_pred CeEEEEEccC-----C---CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 362 MTLKLWDINM-----D---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 362 ~~i~vwd~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+.|.+|.-.. . -.++..+...... .. +|.+..|.++|.+++.+| +.+.|++-.
T Consensus 96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T---------~h---~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT---------PH---PIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cEEEEEEccchhhhcCCcccceeEEEEeecCC---------CC---CccceeEecCCeEEEEeC--CEEEEECCC
Confidence 8888875421 0 1122222211110 01 234899999998777654 578888654
No 390
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.30 E-value=0.077 Score=30.63 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=27.8
Q ss_pred cceEEEEEeCCCC--CeEEEEecCCeEEEEECCCc
Q 012535 283 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS 315 (461)
Q Consensus 283 ~~v~~v~~~p~~~--~~l~~~~~dg~i~iwd~~~~ 315 (461)
+.++++.|+|... .+|+.+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999998763 58999999999999999863
No 391
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.13 E-value=2.1 Score=42.29 Aligned_cols=165 Identities=13% Similarity=0.109 Sum_probs=89.6
Q ss_pred CCEEEEeCCCeEEEEEccCCCCcee-----eeccCCCCC---------CCCCcceEEEEEeCC-CCCeEEEEecCCeEEE
Q 012535 245 GETFISADDLRINLWNLEISNQSFN-----IVDVKPANM---------EDLTEVITSAEFHPT-HCNMLAYSSSKGSIRL 309 (461)
Q Consensus 245 ~~~l~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~---------~~~~~~v~~v~~~p~-~~~~l~~~~~dg~i~i 309 (461)
.++++.+..+.|.||+.+....... .+..+|... ......|+.+...-- +...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 7788888889999999874433211 111111000 002233444443332 2258899999999999
Q ss_pred EECCCcccccccccccccccC-----CCccc-cccccccceeEEEEc--cCCCEEEEecC-CeEEEEEccCCCCCeeEEe
Q 012535 310 IDMRQSALCDTHSKLFEEQEA-----PGTRS-FFTEIIASISDIKFA--RNGRHILSRDY-MTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~h~~~v~~l~~s--~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~ 380 (461)
|.+..-... +........ ..... +.......+++++++ ...++||+++. ..|.||-+.........-.
T Consensus 129 Yyt~~I~~~---i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 129 YYTETIIEA---IERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEHHHHHHH---HHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 986432100 001100000 00001 111123578999998 77788888775 7777776653211111111
Q ss_pred e--ccCccccccccccCCCccceeeEEEecCC---C---EEEEecCCCeEEEEec
Q 012535 381 V--HEHLRPKLCDLYENDSIFDKFECCLSGDG---G---RVATGSYSNLFRVFGC 427 (461)
Q Consensus 381 ~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~iw~~ 427 (461)
. +...+ -+++|-++. . +|++++-.|.+.+|++
T Consensus 206 s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1 11122 278887653 2 7888999999999988
No 392
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.10 E-value=1.5 Score=43.30 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCCEEEEe-CCCeEEEEEccCCC-----------CceeeeccCCCCCCCCCcceEEEEEe--CCCCCeEEEEecCCeEEE
Q 012535 244 DGETFISA-DDLRINLWNLEISN-----------QSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRL 309 (461)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~i 309 (461)
..+.|+.+ +||.|.+|.++.-- .......++|.-.......+++++++ ... ++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEE
Confidence 45567777 89999999763210 00001122332223346688999998 776 89999999998888
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCC-----C-EEEEec-CCeEEEEEc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-----R-HILSRD-YMTLKLWDI 369 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g-----~-~l~s~~-d~~i~vwd~ 369 (461)
|-....... ......+. |...|-+|+|-++. . +|++++ .|.+.+|++
T Consensus 192 Faf~l~~~r---~~~~~s~~----------~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDER---FYHVPSHQ----------HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccc---cccccccc----------cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 865542110 01100110 22558888887743 2 455555 599999888
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.03 E-value=0.1 Score=30.10 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.6
Q ss_pred cceEEEEEcCC-C--CEEEEeecCCcEEEEEcCC
Q 012535 36 DIISAIEFDKS-G--DHLATGDRGGRVVLFERTD 66 (461)
Q Consensus 36 ~~V~~~~~s~~-g--~~l~tg~~dg~i~iw~~~~ 66 (461)
++|.++.|||+ + ++|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5999999999999999874
No 394
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.97 E-value=3.3 Score=38.96 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=38.2
Q ss_pred cceeeEEeCCCCCEEEEeC-CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCC
Q 012535 234 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 294 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 294 (461)
.....|+|.|++++|++-. .|.|++++..+... ..+..+..............|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCc
Confidence 5677899999999888874 79999997653321 111111100011135668899999873
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.83 E-value=5.2 Score=40.58 Aligned_cols=194 Identities=13% Similarity=0.159 Sum_probs=91.8
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC-CEEEEeCCCeEEEEEccCCCCceeeeccC
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISADDLRINLWNLEISNQSFNIVDVK 274 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~d~~i~iwd~~~~~~~~~~~~~~ 274 (461)
.+|.++..||.+.-|. +..... .....++..+ | ..++.--.|+..+ ..+++++|.-..+|.-+ .+..+.-+
T Consensus 596 ~yLlvalgdG~l~~fv-~d~~tg-~lsd~Kk~~l-G-t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spl--- 667 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFV-LDINTG-QLSDRKKVTL-G-TQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPL--- 667 (1096)
T ss_pred eEEEEEcCCceEEEEE-EEcccc-eEcccccccc-C-CCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEecc---
Confidence 3468999999988776 332222 1222222221 1 1233333354443 33444466666666654 33222211
Q ss_pred CCCCCCCCcceEEEEEeCC-CCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 275 PANMEDLTEVITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 275 ~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
.++.. -.-+.|+.+ .+..|+++ ..+.+++.-+..-+.. ++++...+ .....+++.+..
T Consensus 668 --s~kev---~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl--~irtvpl~-------------~~prrI~~q~~s 726 (1096)
T KOG1897|consen 668 --SLKEV---NHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKL--HIRTVPLG-------------ESPRRICYQESS 726 (1096)
T ss_pred --chHHh---hhhcccccccCCceEEEe-cCCceEEEEecchhhc--ceeeecCC-------------CChhheEecccc
Confidence 11110 011222222 21334443 3455666665543221 24444443 245556666533
Q ss_pred CEEEEec------------C---CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC-CCEEEEec
Q 012535 354 RHILSRD------------Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGS 417 (461)
Q Consensus 354 ~~l~s~~------------d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~ 417 (461)
..++..+ . ..++++|-++ ...+..|+... +.....+.++.|..| +.++++|+
T Consensus 727 l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT----f~vl~~hef~~--------~E~~~Si~s~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 727 LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT----FEVLSSHEFER--------NETALSIISCKFTDDPNTYYVVGT 794 (1096)
T ss_pred eEEEEEecccccchhhcCCcceEEEEEEecCCc----eeEEeeccccc--------cceeeeeeeeeecCCCceEEEEEE
Confidence 3333211 1 2455555443 34444444322 233334557778888 67888776
Q ss_pred ----------CCCeEEEEecCCC
Q 012535 418 ----------YSNLFRVFGCSEG 430 (461)
Q Consensus 418 ----------~dg~i~iw~~~~~ 430 (461)
..|+|.||....+
T Consensus 795 ~~v~Pde~ep~~GRIivfe~~e~ 817 (1096)
T KOG1897|consen 795 GLVYPDENEPVNGRIIVFEFEEL 817 (1096)
T ss_pred EeeccCCCCcccceEEEEEEecC
Confidence 2588999998873
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.79 E-value=3.5 Score=38.44 Aligned_cols=98 Identities=22% Similarity=0.252 Sum_probs=60.1
Q ss_pred CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
++..|.-.|.+.....+.....| ... ......+..-...| ++|+++..|-|++||--..+. ...+++-
T Consensus 535 S~~svFrIDPR~~gNKi~v~esK--dY~-tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA----KtalP~l--- 602 (776)
T COG5167 535 SDYSVFRIDPRARGNKIKVVESK--DYK-TKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA----KTALPGL--- 602 (776)
T ss_pred cccceEEecccccCCceeeeeeh--hcc-ccccccccccccCc--eEEEecCCCceeeehhhcchh----hhcCccc---
Confidence 66666666666544333322221 111 12223333334444 899999999999999644321 1122222
Q ss_pred CccccccccccceeEEEEccCCCEEEEecCCeEEEEEcc
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~ 370 (461)
...|..+..+.+|+++++.....+.+-|++
T Consensus 603 ---------G~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 603 ---------GDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ---------ccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 257999999999999998777788888876
No 397
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.75 E-value=1.7 Score=40.14 Aligned_cols=110 Identities=10% Similarity=0.095 Sum_probs=55.6
Q ss_pred cceeeEEeCCCCCEEEEeC------------C-CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEE
Q 012535 234 YHINSISNNSDGETFISAD------------D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~------------d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 300 (461)
.....|+|.++|+++++-. . ..|.+++-.......... ..+.......+.+++.+++ +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV- 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYV- 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEE-
Confidence 4566899999999888731 1 267776543222111100 0111223346889999886 333
Q ss_pred EecCCeEEEEECCCccccc----ccccccccccCCCccccccccccceeEEEEccCCCEEEE
Q 012535 301 SSSKGSIRLIDMRQSALCD----THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 301 ~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
+......++.|........ ..+..+.... ..+......+.|.|||.+.++
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~--------~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQI--------NNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCC--------CcccccccCceECCCCCEEEe
Confidence 4444434444554321111 0011111110 001244788999999987776
No 398
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=1.4 Score=40.20 Aligned_cols=160 Identities=11% Similarity=0.081 Sum_probs=94.2
Q ss_pred eeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 237 NSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 237 ~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
+.+-|+..++.+++...|.+.-|-+...+....+ .--....+.|.++.|++|. +.+|+--.+.+|.+.+....+
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence 3455555555555555555666766544322211 0111245689999999998 999999999999999985443
Q ss_pred cccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCC
Q 012535 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (461)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (461)
.......+.+... ..|.+..|+.. .-+|--.+..+.+|......+.++..+.|...++
T Consensus 100 ~~l~~~~~ck~k~------------~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvn--------- 157 (657)
T KOG2377|consen 100 SQLEYTQECKTKN------------ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVN--------- 157 (657)
T ss_pred hhhHHHHHhccCc------------ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCcc---------
Confidence 2211122222221 45889999865 5666655556778877654566666666665543
Q ss_pred CccceeeEEEecCCCEEE--EecCCCeEEEEecCCC
Q 012535 397 SIFDKFECCLSGDGGRVA--TGSYSNLFRVFGCSEG 430 (461)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~--s~~~dg~i~iw~~~~~ 430 (461)
-..|.++-+.+. ++-..+.+.=+.++++
T Consensus 158 ------Wy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 158 ------WYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ------EEEEccccceEeeeccccccccccEEEeec
Confidence 455667665433 3323444444555544
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=0.43 Score=48.47 Aligned_cols=154 Identities=12% Similarity=0.021 Sum_probs=93.6
Q ss_pred cceeeEEeCCCCCEEEEe---CCCeEEEEEccCCCCceeee--ccCC-CCCCCCCcceEEEEEeCCCCCeEEEEecCCeE
Q 012535 234 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIV--DVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~--~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 307 (461)
..+..+...+|+...++. .+-.|..||++.-....... .++. ...........++.|+|.-+...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345556666776665554 34578889987543222110 0110 11222344567889999876678888899999
Q ss_pred EEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCcc
Q 012535 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 386 (461)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~ 386 (461)
++..+...... +..+... ...++++|+|.|+.++.|.. |++.-|... .+....+ |..+.
T Consensus 181 ~V~~~~~~~~~---v~s~p~t-------------~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~i--p~Pp~ 240 (1405)
T KOG3630|consen 181 RVKSTKQLAQN---VTSFPVT-------------NSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEI--PEPPV 240 (1405)
T ss_pred hhhhhhhhhhh---hcccCcc-------------cceeeEEeccccceeeEecCCCeEEEeecc--cceeecc--cCCCc
Confidence 88876543221 1222221 56899999999999999975 888888764 2333333 22221
Q ss_pred ccccccccCCCccceeeEEEecCCCEEEEe
Q 012535 387 PKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (461)
...+.|.+++|-....+|++-
T Consensus 241 ---------~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 241 ---------EENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ---------CCCcceeEEEEecceeEEEEe
Confidence 112346799998887777653
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.40 E-value=0.068 Score=52.44 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=77.4
Q ss_pred CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC---CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCC
Q 012535 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 279 (461)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (461)
-|.+.+|+ +...++.......-.....-...+.-+.|.| +.-++..+ +++.|++...++.... + +.
T Consensus 152 vg~lfVy~-vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--l-------~r 221 (1283)
T KOG1916|consen 152 VGELFVYD-VDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--L-------FR 221 (1283)
T ss_pred hhhhheee-hHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH--H-------HH
Confidence 46778888 4433333322222222222333445555655 35555566 6888888776543321 1 22
Q ss_pred CCCcceEEEE-----------EeCCCCCeEEEEecCCeEEEEECC-CcccccccccccccccCCCccccccccccceeEE
Q 012535 280 DLTEVITSAE-----------FHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 280 ~~~~~v~~v~-----------~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
+|...+..++ .+||| ..|++++.||.+++|.+. .++....+++..+.|... ++..+-.|...+..+
T Consensus 222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~-p~vC~lc~~~~~~~v 299 (1283)
T KOG1916|consen 222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH-PRVCWLCHKQEILVV 299 (1283)
T ss_pred hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC-CceeeeeccccccCC
Confidence 2444433332 68999 999999999999988764 222222223444444311 111111111111111
Q ss_pred EEccCCCEEEEecC--CeEEEEEccC
Q 012535 348 KFARNGRHILSRDY--MTLKLWDINM 371 (461)
Q Consensus 348 ~~s~~g~~l~s~~d--~~i~vwd~~~ 371 (461)
... --.++++++| ..+++|....
T Consensus 300 ~i~-~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 300 SIG-KWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred ccc-eeEEEEecccCCcceeEeeccc
Confidence 110 1135556665 6789998664
No 401
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.26 E-value=5.5 Score=38.43 Aligned_cols=113 Identities=7% Similarity=0.007 Sum_probs=59.0
Q ss_pred EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEE-----------------EecCCeEE
Q 012535 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-----------------SSSKGSIR 308 (461)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-----------------~~~dg~i~ 308 (461)
.++.+ .+|.+...|.++++...+.. .. ...++.+| + .+++. ...+|.+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~------~~-----~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARP------EV-----EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeE------ee-----ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEE
Confidence 45556 79999999999887665421 00 11122333 1 12221 12467788
Q ss_pred EEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEee
Q 012535 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV 381 (461)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~ 381 (461)
-.|+.+++..++.- ......... .... ..-..+.. .+.+|+.++ +|.++.+|.++ ++.+-.++.
T Consensus 370 AlD~~tG~~~W~~~--~~~~~~~~~---~g~~-~~~~~~~~--~g~~v~~g~~dG~l~ald~~t-G~~lW~~~~ 434 (488)
T cd00216 370 ALDPKTGKVVWEKR--EGTIRDSWN---IGFP-HWGGSLAT--AGNLVFAGAADGYFRAFDATT-GKELWKFRT 434 (488)
T ss_pred EEeCCCCcEeeEee--CCccccccc---cCCc-ccCcceEe--cCCeEEEECCCCeEEEEECCC-CceeeEEEC
Confidence 88888887654321 110000000 0000 00011222 456777765 69999999996 887777654
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.00 E-value=1.6 Score=41.45 Aligned_cols=122 Identities=12% Similarity=0.202 Sum_probs=70.9
Q ss_pred ccceeeEEeCCC----C-CEEEEeCCCeEEEEEccCCCCceeeecc-CCCCC-CCCCcceEEEEEeCCCCCeEEEEecCC
Q 012535 233 DYHINSISNNSD----G-ETFISADDLRINLWNLEISNQSFNIVDV-KPANM-EDLTEVITSAEFHPTHCNMLAYSSSKG 305 (461)
Q Consensus 233 ~~~v~~i~~~~~----~-~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~dg 305 (461)
-..|..+.|.|- . .+||.-....|.+|.+.........+-. +...+ +...--...+.|+|.. .+|++-....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCc
Confidence 367889999986 2 3455547889999988622111100000 00001 1112223578899997 7777766666
Q ss_pred eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--CCeEEEEEcc
Q 012535 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDIN 370 (461)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~ 370 (461)
.-.+++++.....- ...+... +-|.|.+|.+||+.|+.+- .=.-++||-.
T Consensus 135 vSV~~sV~~d~srV--kaDi~~~-------------G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 135 VSVLPSVHCDSSRV--KADIKTS-------------GLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eeEeeeeeeCCceE--EEeccCC-------------ceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 55566665433210 1122222 6799999999999988753 3566788754
No 403
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.73 E-value=5.2 Score=36.26 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEE
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFE 63 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (461)
.-++|+|.|||++|++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3578999999977665 6699999999
No 404
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.70 E-value=9.5 Score=39.19 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=50.6
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECC
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (461)
..-..|.|.++.+.|+.++-..+.++|+++......+ ........|..+.-+|..+.+++.- ....|...|+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l------~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~ 276 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYL------VTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVK 276 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchh------ccCCChhheeeEEecCCccceEEEE-ecCeEEEEEcc
Confidence 4445688988888888888788999999865542212 1233567788999888843344333 34678888887
Q ss_pred C
Q 012535 314 Q 314 (461)
Q Consensus 314 ~ 314 (461)
.
T Consensus 277 ~ 277 (765)
T PF10214_consen 277 S 277 (765)
T ss_pred C
Confidence 7
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.45 E-value=5.2 Score=35.42 Aligned_cols=158 Identities=13% Similarity=0.158 Sum_probs=78.7
Q ss_pred ccccceeeEEeCCCCCEEEEeCCCeE-EEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEE
Q 012535 231 AHDYHINSISNNSDGETFISADDLRI-NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (461)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 309 (461)
...+.+..+..+++|++++++..|.+ .-||.- +...... -..-...|.++.|.|++ .+.+ ....|.|++
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~ 211 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPH------NRNSSRRIQSMGFSPDG-NLWM-LARGGQIQF 211 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEE------E--SSS-EEEEEE-TTS--EEE-EETTTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEE------ccCccceehhceecCCC-CEEE-EeCCcEEEE
Confidence 33467888888999999999955554 566643 2222111 11245789999999997 5544 448888888
Q ss_pred EEC-CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCcccc
Q 012535 310 IDM-RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPK 388 (461)
Q Consensus 310 wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 388 (461)
=+. .......+.+....... ..+..++|.+++...++|..|.+.. ..+ .++.-+.-..-......
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~------------~~~ld~a~~~~~~~wa~gg~G~l~~-S~D-gGktW~~~~~~~~~~~n 277 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNG------------YGILDLAYRPPNEIWAVGGSGTLLV-STD-GGKTWQKDRVGENVPSN 277 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--------------S-EEEEEESSSS-EEEEESTT-EEE-ESS-TTSS-EE-GGGTTSSS-
T ss_pred ccCCCCccccccccCCcccCc------------eeeEEEEecCCCCEEEEeCCccEEE-eCC-CCccceECccccCCCCc
Confidence 772 22221111111111110 3488999999999998888775543 333 35544444332211111
Q ss_pred ccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
.+.+.|.++.+-++. +.+|.|.-|
T Consensus 278 ------------~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 278 ------------LYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp --------------EEEEEETTEEEEE--STTEEEEE
T ss_pred ------------eEEEEEcCCCceEEE-CCCcEEEEe
Confidence 137888766555555 557877654
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.41 E-value=4 Score=33.96 Aligned_cols=134 Identities=9% Similarity=0.053 Sum_probs=74.6
Q ss_pred ccceeeEEeCCCCCEEEEe-CC---------CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe
Q 012535 233 DYHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 302 (461)
....++-..+|+|++++.. .| |.++.|-.... ... +...-.--+.++|+.+...+.++-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~--------i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VEL--------IWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--cee--------eehhccCCccccccccCcEEEEEcc
Confidence 3455667789999996653 22 44444443311 110 1112233467889987744556667
Q ss_pred cCCeEEEEE--CCCccccccc-ccccccccCCCccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeE
Q 012535 303 SKGSIRLID--MRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVAT 378 (461)
Q Consensus 303 ~dg~i~iwd--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~ 378 (461)
.+-+|.-|| ..++...... +..++.... .++ -..-.++...+|.+.++. +.++|...|..+ ++.+..
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~-------~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e 248 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP-------FES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE 248 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCC-------cCC-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence 788887787 5555432210 111211100 000 112334556677776665 458999999997 899888
Q ss_pred EeeccCc
Q 012535 379 FQVHEHL 385 (461)
Q Consensus 379 ~~~~~~~ 385 (461)
+.-....
T Consensus 249 iklPt~q 255 (310)
T KOG4499|consen 249 IKLPTPQ 255 (310)
T ss_pred EEcCCCc
Confidence 8776543
No 407
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.31 E-value=5.6 Score=35.40 Aligned_cols=131 Identities=10% Similarity=0.115 Sum_probs=75.9
Q ss_pred cceeeEEeCCCCCEEEEe-CC---------CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec
Q 012535 234 YHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 303 (461)
...+.+...|+|.+-++. .. ..=.+|.+.......++ +..+-...+.++|||++ +.|+.+..
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-------ecCcEEecCceEECCCC-CEEEEEeC
Confidence 456678888898877765 30 11134433311222211 22334556799999999 66665554
Q ss_pred -CCeEEEEECCC--cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C-CeEEEEEccCCCCCeeE
Q 012535 304 -KGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVAT 378 (461)
Q Consensus 304 -dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-~~i~vwd~~~~~~~~~~ 378 (461)
.+.|.-|++.. +......... .+....+..-.++...+|.+-+++- . +.|.+|+.+ ++++..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~-----------~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~ 249 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFV-----------DFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLGE 249 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEE-----------EccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEEE
Confidence 57888887763 2111110001 1111125566788888888886544 3 499999986 788888
Q ss_pred EeeccCc
Q 012535 379 FQVHEHL 385 (461)
Q Consensus 379 ~~~~~~~ 385 (461)
+..+...
T Consensus 250 i~lP~~~ 256 (307)
T COG3386 250 IKLPVKR 256 (307)
T ss_pred EECCCCC
Confidence 8776443
No 408
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.30 E-value=6.1 Score=35.74 Aligned_cols=185 Identities=13% Similarity=0.150 Sum_probs=92.5
Q ss_pred cceeeEEeCC-CCCEEEEeCCCe------EEEEEccCCC---CceeeeccCC------CCCCCCCcceEEEEEeCCCCCe
Q 012535 234 YHINSISNNS-DGETFISADDLR------INLWNLEISN---QSFNIVDVKP------ANMEDLTEVITSAEFHPTHCNM 297 (461)
Q Consensus 234 ~~v~~i~~~~-~~~~l~~~~d~~------i~iwd~~~~~---~~~~~~~~~~------~~~~~~~~~v~~v~~~p~~~~~ 297 (461)
+.+..|.+.+ ++.+++.++++. +..+++.... ....+....+ ..+........+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 5677888885 455555556666 5555554311 1111111000 0111111244588887777 77
Q ss_pred EEEEecC------CeEEEEECCCcccccccccccccccCC--Ccc-ccccccccceeEEEEccCCCEEEEec------CC
Q 012535 298 LAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAP--GTR-SFFTEIIASISDIKFARNGRHILSRD------YM 362 (461)
Q Consensus 298 l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~h~~~v~~l~~s~~g~~l~s~~------d~ 362 (461)
+++.-.+ ..|+-++.. ++.. ..+..+... ... ..-........+|+++|+|+.|+++. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 7776667 788888876 4432 222111100 000 01112236799999999999555431 22
Q ss_pred --e-------EEEEEccC--CCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEe-----cCCCeEEEEe
Q 012535 363 --T-------LKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-----SYSNLFRVFG 426 (461)
Q Consensus 363 --~-------i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-----~~dg~i~iw~ 426 (461)
. ++++.... .+.+...+...-..+.. ......+..+.+-+++++|+-= +....++|+.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 2 55655542 23334444332221100 0022344589999999987732 2345566666
Q ss_pred cCCC
Q 012535 427 CSEG 430 (461)
Q Consensus 427 ~~~~ 430 (461)
+.-.
T Consensus 248 v~l~ 251 (326)
T PF13449_consen 248 VDLS 251 (326)
T ss_pred EEcc
Confidence 6543
No 409
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.19 E-value=8.9 Score=37.33 Aligned_cols=28 Identities=14% Similarity=-0.004 Sum_probs=22.4
Q ss_pred cEEEEEeCCCeEEEEEccCCceeEEeee
Q 012535 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (461)
Q Consensus 127 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 154 (461)
..++.++.|+.|.-.|.++++..-....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4788888999999999999987665443
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=3.5 Score=42.47 Aligned_cols=84 Identities=12% Similarity=0.036 Sum_probs=52.8
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCC
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (461)
.+.+..|+.|++.. +..... .+. . ......+++++|+|.|+.++.| ..|++.-|... .+....+ ..|.
T Consensus 171 ~av~l~dlsl~V~~-~~~~~~----~v~-s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~i--p~Pp 239 (1405)
T KOG3630|consen 171 SAVDLSDLSLRVKS-TKQLAQ----NVT-S--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEI--PEPP 239 (1405)
T ss_pred hhhhccccchhhhh-hhhhhh----hhc-c--cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecc--cCCC
Confidence 57788888888765 211111 110 0 1234567899999999999999 89999988765 2222111 1111
Q ss_pred CCCCCCcceEEEEEeCCC
Q 012535 277 NMEDLTEVITSAEFHPTH 294 (461)
Q Consensus 277 ~~~~~~~~v~~v~~~p~~ 294 (461)
..+ ...|.+|.|-...
T Consensus 240 ~~e--~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 240 VEE--NYRVLSVTWLSTQ 255 (1405)
T ss_pred cCC--CcceeEEEEecce
Confidence 222 5789999998765
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.06 E-value=3.5 Score=38.01 Aligned_cols=63 Identities=6% Similarity=0.111 Sum_probs=33.4
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCC----CceeeeccCCCCCCC----CCcceEEEEEeCCCCCeEEEEe
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISN----QSFNIVDVKPANMED----LTEVITSAEFHPTHCNMLAYSS 302 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~~~~ 302 (461)
.....+++.+++ ++++......++.|..... ....++. .+.. +......++|.|+| .+.++-+
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~----~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLS----GFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEE----ccCCCCCcccccccCceECCCC-CEEEecc
Confidence 356789999888 5555444333344543211 1111111 1211 23457789999998 6555433
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.03 E-value=6.1 Score=35.01 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=72.7
Q ss_pred CCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccc
Q 012535 243 SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (461)
Q Consensus 243 ~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 322 (461)
.++..++.+..|.| |.........+.+ ..+....+..+.-+++| ++++++..-....-||--...
T Consensus 113 ~~~~~~l~~~~G~i--y~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~------ 177 (302)
T PF14870_consen 113 GDGSAELAGDRGAI--YRTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTT------ 177 (302)
T ss_dssp ETTEEEEEETT--E--EEESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS------
T ss_pred CCCcEEEEcCCCcE--EEeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCcc------
Confidence 33444444444443 4444444444322 22345678889999999 888877666666677753321
Q ss_pred cccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCcccee
Q 012535 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (461)
...|... -...|..+.|.|++.+.+.+..|.|++=+.. .....+..+..... ..-+.++
T Consensus 178 --w~~~~r~--------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~---~~~~~w~~~~~~~~--------~~~~~~l 236 (302)
T PF14870_consen 178 --WQPHNRN--------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDP---DDGETWSEPIIPIK--------TNGYGIL 236 (302)
T ss_dssp ---EEEE----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---TEEEEE---B-TTS--------S--S-EE
T ss_pred --ceEEccC--------ccceehhceecCCCCEEEEeCCcEEEEccCC---CCccccccccCCcc--------cCceeeE
Confidence 1111100 0157999999999988777766888887722 22223322221110 0112246
Q ss_pred eEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 403 ECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 403 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
+++|.+++...++|+. |.+ +...+.|+
T Consensus 237 d~a~~~~~~~wa~gg~-G~l-~~S~DgGk 263 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGS-GTL-LVSTDGGK 263 (302)
T ss_dssp EEEESSSS-EEEEEST-T-E-EEESSTTS
T ss_pred EEEecCCCCEEEEeCC-ccE-EEeCCCCc
Confidence 8999999888887775 444 44555553
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.81 E-value=0.99 Score=37.91 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=51.3
Q ss_pred EeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEc
Q 012535 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (461)
Q Consensus 290 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~ 369 (461)
+...+ .+|++-+.+|.+++||+.+.+.....+.....-........ .....|..+.++.+|.-|++-++|..+.|+.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~--~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDK--SSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccC--CCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 34455 78999999999999999988753222111000000000000 2336789999999999888877788999998
Q ss_pred cC
Q 012535 370 NM 371 (461)
Q Consensus 370 ~~ 371 (461)
+.
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 75
No 414
>PHA02713 hypothetical protein; Provisional
Probab=92.49 E-value=5.8 Score=38.98 Aligned_cols=64 Identities=6% Similarity=0.065 Sum_probs=35.2
Q ss_pred CCCEEEEe-CC------CeEEEEEccC-CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC--eEEEEECC
Q 012535 244 DGETFISA-DD------LRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMR 313 (461)
Q Consensus 244 ~~~~l~~~-~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~iwd~~ 313 (461)
++++.+.| .+ ..+..||.++ .+-. .+ ..+.........+++ ++ ++.++|+.++ .+..||..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~-----~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LI-----TTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCee-Ec-----cccCcccccceeEEE--CC-EEEEEeeecceeehhhcCcc
Confidence 45666665 32 2466788875 2221 11 123322333333333 44 7899999988 67778877
Q ss_pred Ccc
Q 012535 314 QSA 316 (461)
Q Consensus 314 ~~~ 316 (461)
+.+
T Consensus 534 ~~~ 536 (557)
T PHA02713 534 TYE 536 (557)
T ss_pred ccc
Confidence 654
No 415
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=2.3 Score=39.71 Aligned_cols=87 Identities=8% Similarity=0.125 Sum_probs=51.4
Q ss_pred cceeEEEEccCCCEEEE-ecCCeEEEEEcc-C--------CCCCeeEEeeccCccccccccccCCCccceeeEEEecCC-
Q 012535 342 ASISDIKFARNGRHILS-RDYMTLKLWDIN-M--------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG- 410 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s-~~d~~i~vwd~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~- 410 (461)
-.|..+..++.|..++- |.+|.+.+ .+. . ++++.-..+.-. --..+|.....-.+..++|+|+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vM-eLp~rwG~~s~~eDgk~~v~CRt~~----i~~~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVM-ELPKRWGKNSEFEDGKSTVNCRTTP----VAERFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEE-EchhhcCccceecCCCceEEEEeec----ccceeeccCCceeeeeccccCCcc
Confidence 35888999999998886 45654443 331 1 122221111110 01122222333335578999985
Q ss_pred --CEEEEecCCCeEEEEecCCCCcc
Q 012535 411 --GRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 411 --~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..|..-+.|+.|++|++......
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CCceEEEEecCcEEEEEecCCcchh
Confidence 57778888999999999876443
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.00 E-value=6.6 Score=33.72 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=68.6
Q ss_pred cceEEEEEeCCCCCeEEEEecCC--eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec
Q 012535 283 EVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (461)
Q Consensus 283 ~~v~~v~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~ 360 (461)
.....+.|..++ .++-+.+.-| .|+.+|+.+++.... ..+... ..=..++...|.-+.++=-
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~--~~l~~~-------------~FgEGit~~~d~l~qLTWk 108 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQS--VPLPPR-------------YFGEGITILGDKLYQLTWK 108 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEE--EE-TTT---------------EEEEEEETTEEEEEESS
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEE--EECCcc-------------ccceeEEEECCEEEEEEec
Confidence 344578887777 7777777766 799999999875311 111111 1123344443433333444
Q ss_pred CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 361 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
++...+||..+ -+.+.++...... |.++ .|++.|+.......|+++|.++-+..
T Consensus 109 ~~~~f~yd~~t-l~~~~~~~y~~EG----------------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 109 EGTGFVYDPNT-LKKIGTFPYPGEG----------------WGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp SSEEEEEETTT-TEEEEEEE-SSS------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred CCeEEEEcccc-ceEEEEEecCCcc----------------eEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 68999999986 6777777654321 4677 46666766666779999998876443
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.88 E-value=6.6 Score=32.74 Aligned_cols=98 Identities=11% Similarity=0.153 Sum_probs=61.7
Q ss_pred eeeEEeCCCCCEEEEe--CCCeEEEEEc--cCCCC--ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEE
Q 012535 236 INSISNNSDGETFISA--DDLRINLWNL--EISNQ--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (461)
Q Consensus 236 v~~i~~~~~~~~l~~~--~d~~i~iwd~--~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 309 (461)
-+.++|+.+.+.+..- -+-+|.-||. .++.. ...+++++...-.++ -..-.++....| ++.++.-..++|..
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG-~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEG-NLYVATFNGGTVQK 237 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCC-cEEEEEecCcEEEE
Confidence 3578899888887776 3778877884 33321 122333332111111 112344556677 88888888999999
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.|..+++. +..+..+. ..|++++|--
T Consensus 238 ~dp~tGK~----L~eiklPt------------~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKI----LLEIKLPT------------PQITSCCFGG 263 (310)
T ss_pred ECCCCCcE----EEEEEcCC------------CceEEEEecC
Confidence 99999987 44555443 5699999973
No 418
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.64 E-value=18 Score=37.09 Aligned_cols=120 Identities=11% Similarity=0.051 Sum_probs=64.6
Q ss_pred cceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC--CC----EE
Q 012535 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GR----HI 356 (461)
Q Consensus 283 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--g~----~l 356 (461)
..++....+.+. ..++.++.++.+...++..+.+.....+.++ ..|.|+.++|- ++ ++
T Consensus 488 ~~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e---------------~evaCLDisp~~d~~~~s~~~ 551 (1096)
T KOG1897|consen 488 GKITIGVVSANA-SQVVVAGGGLALFYLEIEDGGLREVSHKEFE---------------YEVACLDISPLGDAPNKSRLL 551 (1096)
T ss_pred CceEEEEEeecc-eEEEEecCccEEEEEEeeccceeeeeeheec---------------ceeEEEecccCCCCCCcceEE
Confidence 334444444444 4677777777777777766553211111222 56999999983 32 56
Q ss_pred EEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 357 LSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 357 ~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+.|. +-.+.+--.. +...+....-....++ ..|.-.++-.|..+|.++..||.+.-|-+..+
T Consensus 552 aVG~Ws~~~~~l~~~p-d~~~~~~~~l~~~~iP-----------RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 552 AVGLWSDISMILTFLP-DLILITHEQLSGEIIP-----------RSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred EEEeecceEEEEEECC-CcceeeeeccCCCccc-----------hheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 6675 3233333332 1222222211111111 11235566677889999999999987766644
No 419
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=15 Score=36.33 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=41.1
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEE
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 310 (461)
..+-.+.|+.+..+|+...+|++++|++-.......- ...+.....|..+.+..+| +++-..+|.+.+-
T Consensus 84 ~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~s-----vg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i 152 (829)
T KOG2280|consen 84 GELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNS-----VGFESQMSDIVECRFFHNG---VAVLTVSGQVILI 152 (829)
T ss_pred CCeeeecccCCceEEEEeccceEEEeecchhhhcccc-----cccccccCceeEEEEecCc---eEEEecCCcEEEE
Confidence 3677899998888888889999999998732211100 0112233445555555566 4444455555444
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.53 E-value=11 Score=34.47 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=56.5
Q ss_pred CCcceEEEEEeCCCCCeEEEEecC---C-eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEE
Q 012535 281 LTEVITSAEFHPTHCNMLAYSSSK---G-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (461)
Q Consensus 281 ~~~~v~~v~~~p~~~~~l~~~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l 356 (461)
....+..+.|+|..+.+|+.|-.. . .-|||-++..... ...+..+.. . ..+..=-|.|||..|
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~----~------e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRME----G------ESVGHEFWVPDGSTI 252 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---T----T------EEEEEEEE-TTSS-E
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCC----C------cccccccccCCCCEE
Confidence 456778999999887777776552 2 1355654432211 111111110 0 345555688998876
Q ss_pred EE-e----c-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC-----------
Q 012535 357 LS-R----D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----------- 419 (461)
Q Consensus 357 ~s-~----~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----------- 419 (461)
.- + . +..|.-+|..+ ++......... . .-+.-++||++++-=+.|
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p~-~----------------~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDT-GERRRLMEMPW-C----------------SHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT---EEEEEEE-S-E----------------EEEEE-TTSSEEEEEE-------------
T ss_pred EEEeecCCCCceEEEeeCCCC-CCceEEEeCCc-e----------------eeeEEcCCCCEEEecCCCCCccccccccc
Confidence 63 2 1 24566667765 33222222111 1 145567788887753333
Q ss_pred -----CeEEEEecCCCC
Q 012535 420 -----NLFRVFGCSEGS 431 (461)
Q Consensus 420 -----g~i~iw~~~~~~ 431 (461)
--|++++++.+.
T Consensus 315 ~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGR 331 (386)
T ss_dssp ------EEEEEETTTTE
T ss_pred eecCCcEEEEeccccCc
Confidence 256778887654
No 421
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.27 E-value=4.9 Score=32.37 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=25.0
Q ss_pred cceEEEEEeecC---C-CcEEEEEeCCCeEEEEEccC
Q 012535 113 EKINKIRWCQSA---N-SALYLLSTNDKTIKLWKVQE 145 (461)
Q Consensus 113 ~~v~~v~~~p~~---~-~~~l~~~~~d~~i~vw~~~~ 145 (461)
..|..++|||.. + +-+|++-+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 369999999832 2 33566678999999998764
No 422
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.25 E-value=12 Score=34.53 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=86.8
Q ss_pred ccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCcee-eeccCCCCCCC-CCcceE-EEEEeCCCCCeEEEEecCCeE
Q 012535 231 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN-IVDVKPANMED-LTEVIT-SAEFHPTHCNMLAYSSSKGSI 307 (461)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~v~-~v~~~p~~~~~l~~~~~dg~i 307 (461)
.-...|..+-..|+|+.+..-...++.++++.+.....+ +.+-. ++ ....|+ ++..-..| .-+.+++.||.|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~v 292 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLLVVHEDGLV 292 (733)
T ss_pred CCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEEEEcCCCce
Confidence 334567778889999998887558888898874332211 11100 11 011222 12222233 677888899988
Q ss_pred EEE-ECCCcc-cccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccC
Q 012535 308 RLI-DMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 308 ~iw-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
.-| |.+.+. ..-.+++.++-.. .++..+.=..+-+-+++-+ .|++.++.... .+++-.-...+.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~p------------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~~~ 359 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAP------------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAYQA 359 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCc------------ccceeeccccccceEEEEcCCCceeeeeccc-CcceehhhhhcC
Confidence 877 554432 1111122222111 1222222111223333333 36666665442 222211111111
Q ss_pred ccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
. .-+++||.+.+|++-. .|.|+++.+++...+
T Consensus 360 ~----------------~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 360 P----------------QLVAMSPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred c----------------ceeeeCcccchheeec-CCceEEEEecCCCCC
Confidence 1 2688999999988744 478999999986544
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.23 E-value=2.1 Score=39.66 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=56.2
Q ss_pred CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccc----cc--cceeEEEEcc-CC
Q 012535 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE----II--ASISDIKFAR-NG 353 (461)
Q Consensus 281 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~--~~v~~l~~s~-~g 353 (461)
....+.+++.+|.+ ++.|+...=|+|.++|+.++.. ++.+++..+..- ..+.. +. ..-....-.+ ..
T Consensus 306 ~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~v----vrmWKGYRdAqc-~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 306 SKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIV----VRMWKGYRDAQC-GWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred CCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChh----hhhhccCccceE-EEEEeecccccccccccccCCCCcce
Confidence 34557899999998 8888888889999999998876 555555432100 00000 00 0000000000 12
Q ss_pred CEEEE-ec-CCeEEEEEccCCCCCeeEEeec
Q 012535 354 RHILS-RD-YMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 354 ~~l~s-~~-d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
.+|+. +- .|.|.||+++. +..+..+...
T Consensus 380 l~LvIyaprRg~lEvW~~~~-g~Rv~a~~v~ 409 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQ-GPRVAAFNVG 409 (415)
T ss_pred EEEEEEeccCCeEEEEecCC-CCEEEEEEeC
Confidence 34544 44 49999999996 7777776653
No 424
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.02 E-value=9.6 Score=32.96 Aligned_cols=160 Identities=10% Similarity=0.085 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCCEEEEee---cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 37 IISAIEFDKSGDHLATGD---RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
.+.+.+++++|+.+|... ....++++....... ..+.+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------------------------~~~~g~~------------- 67 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------------------------PVLTGGS------------- 67 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------------------------eeccCCc-------------
Confidence 688999999999777665 233455554332211 1112222
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEE-ccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWK-VQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
+..-.|. .++...++...+...+++. ...+......-.. ... .+.|. .+.++|||..+.+
T Consensus 68 -l~~PS~d--~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~-~~~----~~~I~-------~l~vSpDG~RvA~---- 128 (253)
T PF10647_consen 68 -LTRPSWD--PDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW-PGL----RGRIT-------ALRVSPDGTRVAV---- 128 (253)
T ss_pred -ccccccc--CCCCEEEEEcCCCceEEEEecCCCcceeEEecc-ccc----CCceE-------EEEECCCCcEEEE----
Confidence 6777887 4466666666666667764 2333322211110 000 01344 7899999998622
Q ss_pred CCCCccccccCCCcEEeeeeecccCc--cccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEE
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQET--NLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINL 258 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~i 258 (461)
++....++.|.+--+....+. .......... ......+.+++|.+++.+++.+ .+..+..
T Consensus 129 -----v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~-~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 129 -----VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA-PPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred -----EEecCCCCeEEEEEEEeCCCCCcceeccceEec-ccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 122334577776663333332 1111122211 2334678899999999888877 3444444
No 425
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.75 E-value=3 Score=33.58 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=25.4
Q ss_pred ceeeEEEecCC------CEEEEecCCCeEEEEecCCC
Q 012535 400 DKFECCLSGDG------GRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 400 ~v~~~~~s~~~------~~l~s~~~dg~i~iw~~~~~ 430 (461)
.+..++|||-| -+|++.+.+|.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 45689999953 47899999999999998743
No 426
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.19 E-value=16 Score=34.05 Aligned_cols=155 Identities=9% Similarity=0.092 Sum_probs=81.9
Q ss_pred eeeEEeCCCCCEEEEeCCCeEE-EEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC
Q 012535 236 INSISNNSDGETFISADDLRIN-LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (461)
Q Consensus 236 v~~i~~~~~~~~l~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (461)
...+..++++.+++.+..|.+. -||-. ....+.. .. .....+..+.+.+++ .+++++ .+|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~-----~~-~~~~~l~~v~~~~dg-~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH-----NR-ASARRIQNMGWRADG-GLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe-----cC-CCccceeeeeEcCCC-CEEEEe-CCceEEE-ecCC
Confidence 3445667888888888555443 23322 2111110 11 134568899999998 665544 6666533 3333
Q ss_pred cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCcccccccccc
Q 012535 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (461)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (461)
+.... ...+...... .-...+.++.|.+++..+++|..|.+....- .++............
T Consensus 310 G~~~~--~~~f~~~~~~-------~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~-------- 370 (398)
T PLN00033 310 GLTEE--DFDFEEADIK-------SRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIA-------- 370 (398)
T ss_pred CCccc--ccceeecccC-------CCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCC--------
Confidence 32100 0011111000 0003588999999999999998887776543 244444333211110
Q ss_pred CCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
. +.+.+.|.++++.+++| .+|.|.-|
T Consensus 371 -~---~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 371 -A---NLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -c---ceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 0 12378888777666654 46777554
No 427
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.87 E-value=26 Score=36.10 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=78.0
Q ss_pred cccceeeEEeC---C----CCCEEEEeCCCeEEEEEccCCCC------ceeeeccCC-CCCC---CCCcceEEEEEeCCC
Q 012535 232 HDYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANME---DLTEVITSAEFHPTH 294 (461)
Q Consensus 232 ~~~~v~~i~~~---~----~~~~l~~~~d~~i~iwd~~~~~~------~~~~~~~~~-~~~~---~~~~~v~~v~~~p~~ 294 (461)
...+|..|+|. . ..++|++-....+.|+...-.+. ....++..+ ..+. -.......++|+|..
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 44678888887 2 23455555667777877321111 111111111 0111 123456789999987
Q ss_pred CCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccC
Q 012535 295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 295 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
...||+-...|...|||+............+..... +....=......-..+.|.++-..|+.++...+.++|+..
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 789999999999999999222111000011110000 0000000011445688999888899999988999999985
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=89.61 E-value=16 Score=33.22 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=87.6
Q ss_pred ccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC
Q 012535 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 312 (461)
...+.++.+.+++.+++++..|.+..- .+......... .......++++.+.+++ .++++ +..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEE-ecCCEEEEccC
Confidence 456788999999888888877766532 12222222211 11234678899999988 66655 45676653223
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCcccccccc
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (461)
..+.... ....+.. .-...+..+.+.+++..+++|.+|.+.. ... .++.............
T Consensus 243 d~G~sW~----~~~~~~~--------~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d-~G~tW~~~~~~~~~~~----- 303 (334)
T PRK13684 243 DDLESWS----KPIIPEI--------TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKD-GGKTWEKDPVGEEVPS----- 303 (334)
T ss_pred CCCCccc----cccCCcc--------ccccceeeEEEcCCCCEEEEcCCCeEEE-eCC-CCCCCeECCcCCCCCc-----
Confidence 3333211 0010000 0003478899999888888888876653 333 2444433322111100
Q ss_pred ccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
..+.+.|..+++.+++ +..|.|.-|+-
T Consensus 304 -------~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 304 -------NFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred -------ceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 1136777766666665 55688877754
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.47 E-value=1.9 Score=36.27 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=47.5
Q ss_pred eCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCC-------CCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC
Q 012535 241 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 241 ~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 312 (461)
+..+++++++- .+|.+++||+.+.+.......+.| -+. .....|..+.++.+| .-+++ -.+|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p-ll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~-lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP-LLNSSPVSDKSSSPNITSCSLTSNG-VPIVT-LSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH-HhcccccccCCCCCcEEEEEEcCCC-CEEEE-EeCCCEEEecc
Confidence 44567777666 899999999997665443322211 111 355778889999888 55554 45678888887
Q ss_pred CCc
Q 012535 313 RQS 315 (461)
Q Consensus 313 ~~~ 315 (461)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 544
No 430
>PHA02713 hypothetical protein; Provisional
Probab=88.86 E-value=13 Score=36.64 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=20.3
Q ss_pred CCCEEEEecCCC--eEEEEecCCCCcc
Q 012535 409 DGGRVATGSYSN--LFRVFGCSEGSAE 433 (461)
Q Consensus 409 ~~~~l~s~~~dg--~i~iw~~~~~~~~ 433 (461)
++++.++||.|| .+-.||+.+.+-.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccccc
Confidence 788899999888 7888888877544
No 431
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.59 E-value=16 Score=32.01 Aligned_cols=233 Identities=11% Similarity=0.103 Sum_probs=117.2
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeec-----ccccceeeEEeCCCCC----
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH-----AHDYHINSISNNSDGE---- 246 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~---- 246 (461)
.++++|.+... ++....+...+|| .......-........+. ......+.+.|+....
T Consensus 27 Gia~~p~~~~W------------VadngT~~~TlYd-g~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt 93 (336)
T TIGR03118 27 GLSYRPGGPFW------------VANTGTGTATLYV-GNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVS 93 (336)
T ss_pred eeEecCCCCEE------------EecCCcceEEeec-CCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEc
Confidence 67888888764 7778888899998 321100001111111111 1223566777764322
Q ss_pred ---------EEEEeCCCeEEEEEccCCCC----ceeeeccCCCCCCCCCcceE-EEEEeC--CCCCeEEEEecCCeEEEE
Q 012535 247 ---------TFISADDLRINLWNLEISNQ----SFNIVDVKPANMEDLTEVIT-SAEFHP--THCNMLAYSSSKGSIRLI 310 (461)
Q Consensus 247 ---------~l~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~-~v~~~p--~~~~~l~~~~~dg~i~iw 310 (461)
+|.+.+||+|.-|....... ...+++ ......|. .+++.. .+..+.++-...++|.++
T Consensus 94 ~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d------~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 94 GEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVD------ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred CCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEc------cCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 23444899999998643222 111110 01123333 455543 242445555668899999
Q ss_pred ECCCcccccccccccccccCCCccc-ccccccc---ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCc
Q 012535 311 DMRQSALCDTHSKLFEEQEAPGTRS-FFTEIIA---SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (461)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~---~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~ 385 (461)
|-.-..... ...|..+..+.--. +-....+ .|+-..-.++++.=+.|. -|.|-+||+. ++.++++.. .+.
T Consensus 168 d~~f~~~~~--~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as-~g~ 242 (336)
T TIGR03118 168 KGSFRPPPL--PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVAS-SGR 242 (336)
T ss_pred cCccccccC--CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEecc-CCc
Confidence 865443210 01122111110000 0000001 122222223333323333 3789999996 788888743 222
Q ss_pred cccccccccCCCccceeeEEEec------CCCEEEEecCCCeEEEEecCCCCccceeeccCCCCC
Q 012535 386 RPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
.+ .-|.++..| .+.+|+---.||+|..||..+++...........|+
T Consensus 243 LN------------aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi 295 (336)
T TIGR03118 243 LN------------APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV 295 (336)
T ss_pred cc------------CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence 21 114676654 367787777799999999999876655554444443
No 432
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.54 E-value=13 Score=34.50 Aligned_cols=36 Identities=8% Similarity=-0.058 Sum_probs=22.7
Q ss_pred cceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCcee
Q 012535 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~ 269 (461)
.-|++|..|.|.++|..+ -+|.|+.||+.....+..
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 557889999999999876 699999999987665543
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.40 E-value=19 Score=32.63 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=38.8
Q ss_pred ccceeEEEEcc-------CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 341 IASISDIKFAR-------NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 341 ~~~v~~l~~s~-------~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
..++..+.|-. .|.++++.- .+.|....+...+. +...+..-. +.-..+.++++.|||.+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~-----------~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS-VTEEEEFLG-----------GFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE-EEEEEEECT-----------TSSS-EEEEEEETTSEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC-ccceEEccc-----------cCCCCceEEEEcCCCeE
Confidence 35677777764 445666543 36777777764222 211111000 11112459999999998
Q ss_pred EEEecCCCeEE
Q 012535 413 VATGSYSNLFR 423 (461)
Q Consensus 413 l~s~~~dg~i~ 423 (461)
+++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 88888888774
No 434
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.24 E-value=28 Score=34.35 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=16.3
Q ss_pred CCCEEEEecCCC-----eEEEEecCCCC
Q 012535 409 DGGRVATGSYSN-----LFRVFGCSEGS 431 (461)
Q Consensus 409 ~~~~l~s~~~dg-----~i~iw~~~~~~ 431 (461)
+++..++|+.|| +|-.||..+++
T Consensus 522 ~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 522 GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCEEEEEecccCccccceeEEcCCCCCc
Confidence 677788888775 56677776654
No 435
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.13 E-value=2.2 Score=39.10 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=27.5
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCc
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 267 (461)
..+.-++++|.+.++++-+.|.++++.+++....
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred cCcceeeeCcccchheeecCCceEEEEecCCCCC
Confidence 3556788999999999888899999999865443
No 436
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.78 E-value=31 Score=34.28 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=30.0
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCC
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~ 68 (461)
...-++++.-+|.|+-++.+..||.|++|+.....
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 45568889989999999999999999999987554
No 437
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.26 E-value=3 Score=23.84 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=23.5
Q ss_pred cCCCEEEEec--CCeEEEEEccCCCCCeeEEeecc
Q 012535 351 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 351 ~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
|++++|++++ ++.|.++|..+ .+.+..+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCC
Confidence 5778788765 48999999975 67776666533
No 438
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.24 E-value=18 Score=31.12 Aligned_cols=162 Identities=13% Similarity=0.070 Sum_probs=90.6
Q ss_pred ccccceeeEEeCCCCCEEEEe---CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeE
Q 012535 231 AHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (461)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 307 (461)
........+.|..++.++-+. ....|+.+|+.+++..... .+.. .-.-..++...+ ++..-.-.++..
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~------~l~~-~~FgEGit~~~d--~l~qLTWk~~~~ 112 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV------PLPP-RYFGEGITILGD--KLYQLTWKEGTG 112 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE------E-TT-T--EEEEEEETT--EEEEEESSSSEE
T ss_pred CCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE------ECCc-cccceeEEEECC--EEEEEEecCCeE
Confidence 334455678887777777765 3668999999976544322 1211 112234455543 466666778899
Q ss_pred EEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccC--
Q 012535 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH-- 384 (461)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~-- 384 (461)
.+||..+-+. +.++.-. +.=..++ .||+.|+.++ ...++++|..+ -+....+.....
T Consensus 113 f~yd~~tl~~----~~~~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 113 FVYDPNTLKK----IGTFPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGR 172 (264)
T ss_dssp EEEETTTTEE----EEEEE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTE
T ss_pred EEEccccceE----EEEEecC-------------CcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCE
Confidence 9999987655 3333322 1234555 4666666654 47999999875 555666554432
Q ss_pred ccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccc
Q 012535 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 434 (461)
++..+ ..+.|- +|...|-.=....|..-|..+|+...
T Consensus 173 pv~~L------------NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 173 PVSNL------------NELEYI-NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp E---E------------EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred ECCCc------------EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 22222 256665 66666655455677777888887653
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.00 E-value=0.39 Score=47.51 Aligned_cols=133 Identities=13% Similarity=0.049 Sum_probs=74.4
Q ss_pred CCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC--cccccccccccccccCCCccccccccccceeEEEEcc---C
Q 012535 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---N 352 (461)
Q Consensus 278 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~ 352 (461)
+.+..+.+-.++|-...+..++ -.-|.+.+||+.- |+...+..-+..... ...+.-+.|+| +
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~-----------gs~~~~V~wcp~~~~ 194 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY-----------GSDPQLVSWCPIAVN 194 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC-----------CCCcceeeecccccc
Confidence 3456677777777543322222 3447788998753 332211111111111 13345566665 5
Q ss_pred CCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 353 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 353 g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
..++..+.+ +.|++.++.+ .....+.+|...+....-+. .+.+. --..||||..++.++.||.+++|.+.-
T Consensus 195 ~~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~-~g~~~---l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFA-EGVLK---LASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHh-hchhh---heeeCCCCcEEEEeecCCccceeeeee
Confidence 555555654 8888877764 23355666776554322111 11110 224899999999999999999998763
No 440
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.88 E-value=11 Score=39.79 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=51.5
Q ss_pred cceeEEEEccCCCEEEEecCCeEEEEEccC--C----CCCeeEEeecc----CccccccccccCCCccceeeEEEecCCC
Q 012535 342 ASISDIKFARNGRHILSRDYMTLKLWDINM--D----SGPVATFQVHE----HLRPKLCDLYENDSIFDKFECCLSGDGG 411 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~--~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (461)
..|+++....+|+.+++|.|| .+|.+.. . ++....+.-.. ..++.+..+. .....+|..++......
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITIDNSRN 255 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEeccccc
Confidence 468899988899999999888 4454432 0 11111111000 0111111111 01112345888888888
Q ss_pred EEEEecCCCeEEEEecCCC
Q 012535 412 RVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 412 ~l~s~~~dg~i~iw~~~~~ 430 (461)
.|.+-+..|.|.+|++...
T Consensus 256 IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeeeccCceEEEEEccCC
Confidence 9999999999999999873
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.03 E-value=0.16 Score=46.52 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=85.9
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d 253 (461)
...|.+++..+ +.++.+..+..|| .... ..- .....+....++|+.++..++.. ..
T Consensus 39 ~~~w~~e~~nl------------avaca~tiv~~YD----~agq----~~l--e~n~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 39 IHRWRPEGHNL------------AVACANTIVIYYD----KAGQ----VIL--ELNPTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred eeeEecCCCce------------ehhhhhhHHHhhh----hhcc----eec--ccCCchhHhhhhhccccchhhhhhhcC
Confidence 45677777664 8888888888888 1111 110 01233556678888888777664 68
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCc
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (461)
+.+.+||+.+.... ++ .+.+ ...-.-+.|++.. ..++.+-..|.++|++....+.. -...
T Consensus 97 ~piylwd~n~eytq-qL------E~gg-~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~i----iv~G------- 156 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQ-QL------ESGG-TSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRI----IVMG------- 156 (615)
T ss_pred CCeeechhhhhhHH-HH------hccC-cchHHHHhhccCC-ccccccccccceEEEeccchhhh----hhhc-------
Confidence 99999999854322 11 1111 1111227789887 78888989999999998776531 1111
Q ss_pred cccccccccceeEEEEccCCCEEEE
Q 012535 334 RSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 334 ~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
.|...++++++.+.+..+..
T Consensus 157 -----kh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 157 -----KHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred -----ccccceeEEEecccceeeec
Confidence 13367889999887665543
No 442
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=18 Score=29.73 Aligned_cols=30 Identities=3% Similarity=-0.091 Sum_probs=21.1
Q ss_pred CCcEEEEEe--CCCeEEEEEccCCceeEEeee
Q 012535 125 NSALYLLST--NDKTIKLWKVQEKKVKKVFDW 154 (461)
Q Consensus 125 ~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~ 154 (461)
++.++.+.+ ....|++||+.+++.......
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l 86 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKL 86 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeec
Confidence 456666665 456799999999887665444
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.61 E-value=41 Score=33.53 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=30.2
Q ss_pred cceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEe
Q 012535 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 380 (461)
..+..+..||+.++|+--. .|.|.+-+.+. .+.+..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 5688899999999999865 49999988875 56665555
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.84 E-value=8.2 Score=35.61 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=33.1
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCC
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~ 68 (461)
++...++|.++.||+|.+.||+--.+.+|.+++....+
T Consensus 62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 45567899999999999999999999999999985443
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.80 E-value=11 Score=39.62 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=54.6
Q ss_pred ccceeeEEeCCCCCEEEEeCCCeEEEEEccCCC-----Cceeee-------ccCC--CCCC-CCCcceEEEEEeCCCCCe
Q 012535 233 DYHINSISNNSDGETFISADDLRINLWNLEISN-----QSFNIV-------DVKP--ANME-DLTEVITSAEFHPTHCNM 297 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~-----~~~~~~-------~~~~--~~~~-~~~~~v~~v~~~p~~~~~ 297 (461)
...|+++....+|+.|.+|.||.|.-.-..... .+.++- .+-| ..+. .+.++|..++..... .+
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~I 256 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NI 256 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ce
Confidence 467889998899999999976744332222111 011100 0001 1233 567899999999887 89
Q ss_pred EEEEecCCeEEEEECCC
Q 012535 298 LAYSSSKGSIRLIDMRQ 314 (461)
Q Consensus 298 l~~~~~dg~i~iwd~~~ 314 (461)
+.+-+..|+|.+||+..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 99999999999999987
No 446
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=83.62 E-value=48 Score=32.76 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=18.4
Q ss_pred CCcEEEEEeCCC-----eEEEEEccCCceeEE
Q 012535 125 NSALYLLSTNDK-----TIKLWKVQEKKVKKV 151 (461)
Q Consensus 125 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~~ 151 (461)
+|...++|+.|| ++-.||..+.+....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCccccc
Confidence 477888898886 466777776654443
No 447
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.65 E-value=9.1 Score=37.64 Aligned_cols=40 Identities=10% Similarity=0.328 Sum_probs=28.1
Q ss_pred eEEEEEee--cCCCcEEEEEeCCCeEEEEEccCCceeEEeee
Q 012535 115 INKIRWCQ--SANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (461)
Q Consensus 115 v~~v~~~p--~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 154 (461)
+..++.++ -.+..++++.+.|+++|+||+.++++......
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 44455543 12456899999999999999999988665543
No 448
>PRK10115 protease 2; Provisional
Probab=82.52 E-value=60 Score=33.03 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=63.6
Q ss_pred cceeeEEeCCCCCEEEEe-C-----CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---
Q 012535 234 YHINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--- 304 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--- 304 (461)
..+..+.++|++++|+.+ + ...|++.|+.++..... .+.+ .-..++|.+++ +.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-------~i~~---~~~~~~w~~D~-~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-------LLDN---VEPSFVWANDS-WTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-------cccC---cceEEEEeeCC-CEEEEEEecCCC
Confidence 346678899999999876 3 24577888875542211 1211 11469999998 555555443
Q ss_pred ---CeEEEEECCCcccccccccccccccCCCcccccccccccee-EEEEccCCCEEEEe--c--CCeEEEEEcc
Q 012535 305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR--D--YMTLKLWDIN 370 (461)
Q Consensus 305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~g~~l~s~--~--d~~i~vwd~~ 370 (461)
..|..+++.++.... ...++... .... .+..+.++++++.. + ++.+.+++..
T Consensus 196 ~~~~~v~~h~lgt~~~~d--~lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQD--ELVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCEEEEEECCCChhHC--eEEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 357777777663221 12222221 1122 33344488877652 2 3789999854
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.02 E-value=28 Score=28.88 Aligned_cols=119 Identities=10% Similarity=0.114 Sum_probs=63.8
Q ss_pred CCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC------eEEEE-ECCCccc
Q 012535 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG------SIRLI-DMRQSAL 317 (461)
Q Consensus 245 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg------~i~iw-d~~~~~~ 317 (461)
+.+|+++..+.|.+|++.+.+..... ++.. -+.|..++++..| ++|++--.+. .+|+| +.+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~------~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLC------TFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeE------EEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 33444457888999999833322211 2332 3778999999999 8888754432 56665 2222111
Q ss_pred cccccc-ccccccCCCcccc-----c----cccccceeEEEEccCCCEEEEecCCeEEEEEccC
Q 012535 318 CDTHSK-LFEEQEAPGTRSF-----F----TEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 318 ~~~~~~-~~~~~~~~~~~~~-----~----~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
....++ .+-+|....+... + -.-..++.+++..|-..-|+.|.++.+.+|.+..
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 111111 1111110000000 0 0113467888888854555666677999998864
No 450
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.01 E-value=45 Score=31.26 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=37.2
Q ss_pred CEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECC
Q 012535 246 ETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (461)
Q Consensus 246 ~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (461)
+-++.. -||.+.+++-+.- .+.. .+.. ---...+.|.|.. ..|++++.+..+.-|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~--~f~~------~lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESF--AFSR------FLPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcE--EEEE------EcCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence 344443 5999999986632 2221 1221 2223457788876 789999999999998754
No 451
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.92 E-value=28 Score=34.88 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.7
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFER 64 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~ 64 (461)
-.+.|-+.+||.|.+.++....+.+|.+++.
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 3567889999999998888888888988874
No 452
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.47 E-value=50 Score=31.38 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=37.5
Q ss_pred CcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 282 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
-...+.++|.|++ ++|++--..|.|++++...+... .+..+.... ...-.+....|+++|+-
T Consensus 29 L~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~--~~~~l~~v~-------~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVK--VVFTLPEIV-------NDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCcee--eeecCCcee-------ccCCCCceeeEEECCCc
Confidence 3457899999998 77776555799999986554311 011111000 00012678999999874
No 453
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.45 E-value=41 Score=32.02 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=48.9
Q ss_pred cceeeEEeCCCCCEEEEe-CCCeEEEEEccC---------CCCceee--eccCCCCC-CCCCcceEEEEEeCCC--CCeE
Q 012535 234 YHINSISNNSDGETFISA-DDLRINLWNLEI---------SNQSFNI--VDVKPANM-EDLTEVITSAEFHPTH--CNML 298 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~---------~~~~~~~--~~~~~~~~-~~~~~~v~~v~~~p~~--~~~l 298 (461)
-.|..+..++.|..++-+ .+|.+.++=.+. ++..+.. +.+...-+ ....-.+..++|+|+. ...|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 356667777887776655 666665543221 1111111 11100001 1122345688999986 4688
Q ss_pred EEEecCCeEEEEECCCccc
Q 012535 299 AYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 299 ~~~~~dg~i~iwd~~~~~~ 317 (461)
..-+.|..||+||+.....
T Consensus 184 ~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEecCcEEEEEecCCcch
Confidence 8889999999999987653
No 454
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=80.57 E-value=5.3 Score=20.51 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEE
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (461)
..|.+++..+ .+++++...+.+|||.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 3578888774 4899999999999984
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.46 E-value=0.54 Score=43.24 Aligned_cols=141 Identities=9% Similarity=0.085 Sum_probs=88.7
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCC
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (461)
...|-| .+.-++.++.+..+..||-.......... .+... .++|.-++..+
T Consensus 39 ~~~w~~--e~~nlavaca~tiv~~YD~agq~~le~n~----------tg~al-------dm~wDkegdvl---------- 89 (615)
T KOG2247|consen 39 IHRWRP--EGHNLAVACANTIVIYYDKAGQVILELNP----------TGKAL-------DMAWDKEGDVL---------- 89 (615)
T ss_pred eeeEec--CCCceehhhhhhHHHhhhhhcceecccCC----------chhHh-------hhhhccccchh----------
Confidence 345554 45558899999999999865443222111 11111 55666666654
Q ss_pred ccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCC
Q 012535 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (461)
++.+...+.+.+|| +.......... -..|... -+.|++....++.+ ..+.+.+++-.+.+...
T Consensus 90 -avlAek~~piylwd-~n~eytqqLE~-----gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~ii------- 153 (615)
T KOG2247|consen 90 -AVLAEKTGPIYLWD-VNSEYTQQLES-----GGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRII------- 153 (615)
T ss_pred -hhhhhcCCCeeech-hhhhhHHHHhc-----cCcchHH--HHhhccCCccccccccccceEEEeccchhhhh-------
Confidence 56778889999999 54332221110 0112222 26799999999999 78999999988666553
Q ss_pred CCCCCCCcceEEEEEeCCCCCeEEEEecCC
Q 012535 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (461)
Q Consensus 276 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 305 (461)
.+..|...++++++.+.+ +.+.++.|.
T Consensus 154 -v~Gkh~RRgtq~av~lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 154 -VMGKHQRRGTQIAVTLED--YVILCDCDN 180 (615)
T ss_pred -hhcccccceeEEEecccc--eeeecCcHH
Confidence 234488899999999976 445444443
No 456
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.87 E-value=38 Score=29.01 Aligned_cols=123 Identities=12% Similarity=0.181 Sum_probs=63.0
Q ss_pred EEEEeCCCCCeEEEEecC---CeEEEEECCC-ccccc--ccccccccccCCCccccccccccceeEEEEccCCCEEEEec
Q 012535 287 SAEFHPTHCNMLAYSSSK---GSIRLIDMRQ-SALCD--THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (461)
Q Consensus 287 ~v~~~p~~~~~l~~~~~d---g~i~iwd~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~ 360 (461)
+-++-|+| ++|.+|+.. ..+++++... ...+. +....+... .+--.+..-|||+.|+.|+
T Consensus 71 gg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~-------------RWYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 71 GGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG-------------RWYPTATTLPDGRVLIVGG 136 (243)
T ss_pred CcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC-------------CccccceECCCCCEEEEeC
Confidence 34577898 899888762 3477777644 11100 000011111 2344555668999999876
Q ss_pred C--CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 361 Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 361 d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
. .+..+|.-.........+........ ......+ -.+-..|||++++.+..+. .|||..+.+.
T Consensus 137 ~~~~t~E~~P~~~~~~~~~~~~~l~~~~~-----~~~~nlY--P~~~llPdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 137 SNNPTYEFWPPKGPGPGPVTLPFLSQTSD-----TLPNNLY--PFVHLLPDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred cCCCcccccCCccCCCCceeeecchhhhc-----cCccccC--ceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence 3 45566654321111111111110000 0001111 1566789999999888764 4668887754
No 457
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.59 E-value=23 Score=33.44 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=25.2
Q ss_pred eeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
|..++..+..+.|++.+.+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 568999999999999999999999999853
No 458
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.39 E-value=11 Score=36.93 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=25.2
Q ss_pred cceEEEEEeC----CCCCeEEEEecCCeEEEEECCCccc
Q 012535 283 EVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 283 ~~v~~v~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
..+..+++++ +. .++++.+.|+++|+||+.+++.
T Consensus 215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeE
Confidence 3455666666 44 7999999999999999999876
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.49 E-value=52 Score=29.80 Aligned_cols=126 Identities=16% Similarity=0.196 Sum_probs=68.3
Q ss_pred ceeeEEeCCCCCEEEEe-CC------CeEEEEEccCCCCceeeeccCC-C-------CCCCCCcceEEEEEeCCCCCeEE
Q 012535 235 HINSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKP-A-------NMEDLTEVITSAEFHPTHCNMLA 299 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~-~-------~~~~~~~~v~~v~~~p~~~~~l~ 299 (461)
...+|++.+++.++++. .+ ..|..++.. +.....+ .+.. . .-...+....+++++|+| +.|+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~-~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRF-PVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLF 162 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceE-ccccccccccCccccccCCCCeEEEEECCCC-CEEE
Confidence 34567777778888877 56 778888766 3332222 1110 0 112245678899999999 7555
Q ss_pred EEecC-----C---------eEEEE--ECCC-cccccccccccccccCCCccccccccccceeEEEEccCCCEEEE--e-
Q 012535 300 YSSSK-----G---------SIRLI--DMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--R- 359 (461)
Q Consensus 300 ~~~~d-----g---------~i~iw--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s--~- 359 (461)
++... + .++++ |..+ +.....+.+.++..... .....+..+.+-+++++|+. .
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~-------~~~~~isd~~al~d~~lLvLER~~ 235 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA-------PGDNGISDIAALPDGRLLVLERDF 235 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccc-------cCCCCceeEEEECCCcEEEEEccC
Confidence 54432 2 14444 4433 21222222333220000 01257899999999998885 2
Q ss_pred ---cCCeEEEEEcc
Q 012535 360 ---DYMTLKLWDIN 370 (461)
Q Consensus 360 ---~d~~i~vwd~~ 370 (461)
....++||.+.
T Consensus 236 ~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 236 SPGTGNYKRIYRVD 249 (326)
T ss_pred CCCccceEEEEEEE
Confidence 12456665554
No 460
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=78.27 E-value=48 Score=29.33 Aligned_cols=154 Identities=11% Similarity=0.137 Sum_probs=78.7
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCC----CeE-EEEecCCeEEEEECCCccccccccccccccc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC----NML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~----~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
+|.+||+.+.+ ..+.+.+.+.... ....+..+++....+ .++ ++=...+-|.++|+.+++.. +.+....
T Consensus 35 KLv~~Dl~t~~-li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQ-LIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHNSF 108 (287)
T ss_dssp EEEEEETTTTC-EEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETCGC
T ss_pred EEEEEECCCCc-EEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecCCc
Confidence 56677887655 3333333322222 466788888877421 133 33333468999999998742 2221111
Q ss_pred CCCc--ccc-----ccccccceeEEEEcc---CCCEEEEecCCeEEEEEccC----CCC---------CeeEEeeccCcc
Q 012535 330 APGT--RSF-----FTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINM----DSG---------PVATFQVHEHLR 386 (461)
Q Consensus 330 ~~~~--~~~-----~~~h~~~v~~l~~s~---~g~~l~s~~d~~i~vwd~~~----~~~---------~~~~~~~~~~~~ 386 (461)
.+.+ ..+ .......+.+++.+| +|++|.-+.-..-++|.+.+ ... .+..+ +.....
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~ 187 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQ 187 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---S
T ss_pred ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCC
Confidence 1111 000 011223477777766 67777755432334444432 000 01111 111100
Q ss_pred ccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
.-.++.+++|.++++--..+.|..|+...
T Consensus 188 --------------s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 188 --------------SDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp --------------ECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred --------------CceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 02788999999999999999999999986
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.19 E-value=27 Score=26.44 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=63.7
Q ss_pred EeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeC----CCCCeEEEEecCCeEEEEECCC
Q 012535 240 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQ 314 (461)
Q Consensus 240 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p----~~~~~l~~~~~dg~i~iwd~~~ 314 (461)
.|......|+++ ..|+|.|++........... -.+..+-.-...|++++-.+ ++...|+.|+. ..+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~-~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQ-DSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccc-cCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 455555667777 78999999876432211000 00001222355677776554 22256666654 5588999987
Q ss_pred cccccccccccccccCCCccccccccccceeEEEEcc----CCCEEEEecCCeEEEEEcc
Q 012535 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR----NGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~----~g~~l~s~~d~~i~vwd~~ 370 (461)
... +..-+.+ ..|+++.+-. +..+++.|+...|.=||..
T Consensus 83 N~d----~Fyke~~-------------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 83 NSD----LFYKEVP-------------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred Cch----hhhhhCc-------------cceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 653 2222222 4577777643 4557777777778777765
No 462
>PHA03098 kelch-like protein; Provisional
Probab=78.17 E-value=72 Score=31.29 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=16.8
Q ss_pred CCcEEEEEeCC-----CeEEEEEccCCceeE
Q 012535 125 NSALYLLSTND-----KTIKLWKVQEKKVKK 150 (461)
Q Consensus 125 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~ 150 (461)
++..++.|+.+ ..+..||..+++...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 35677777755 356778877766543
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=77.02 E-value=42 Score=27.92 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=41.6
Q ss_pred ccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCC---ceeeeccCCCCCCCC-CcceEEEEEeCCCCCeEEEEecCCeEE
Q 012535 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQ---SFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIR 308 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~ 308 (461)
...+.+++..|-...|+.|.++.+.+|.+..... ...+.++...-+.-+ .-.+..+++.- .++|..+ +-.++
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~ 209 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICE---GYIAVMS-DLEVL 209 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEe---eEEEEec-CCEEE
Confidence 4577889988876667777778899998764322 122333321111112 22345666663 4555543 44555
Q ss_pred EEEC
Q 012535 309 LIDM 312 (461)
Q Consensus 309 iwd~ 312 (461)
+..+
T Consensus 210 Vlkl 213 (215)
T PF14761_consen 210 VLKL 213 (215)
T ss_pred EEEE
Confidence 5543
No 464
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=76.73 E-value=7.1 Score=20.12 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCEEEEeecCCcEEEE
Q 012535 38 ISAIEFDKSGDHLATGDRGGRVVLF 62 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw 62 (461)
-..++++++|+++++=+.++.|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4578888888777776677777664
No 465
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=76.47 E-value=54 Score=28.96 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=39.3
Q ss_pred CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeC------CCCCeEEEEecCCeEEEEECCCccc
Q 012535 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP------THCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p------~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
.-|.|.+||+. +....++ .-.+.-...+.++..| .+ .+|+--..||+|..+|..+++.
T Consensus 220 G~G~VdvFd~~-G~l~~r~------as~g~LNaPWG~a~APa~FG~~sg-~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 220 GLGYVNVFTLN-GQLLRRV------ASSGRLNAPWGLAIAPESFGSLSG-ALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred CcceEEEEcCC-CcEEEEe------ccCCcccCCceeeeChhhhCCCCC-CeEEeecCCceeEEecCCCCce
Confidence 45789999987 4433332 1233445567777755 34 6777777899999999988765
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.32 E-value=8.3 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=18.1
Q ss_pred CCcceEEEEEeCCCCCeEEEEe-cC--CeEEEE
Q 012535 281 LTEVITSAEFHPTHCNMLAYSS-SK--GSIRLI 310 (461)
Q Consensus 281 ~~~~v~~v~~~p~~~~~l~~~~-~d--g~i~iw 310 (461)
....-....|+||| +.|+.++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDG-k~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDG-KYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTS-SEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCC-CEEEEEecCCCCCCcCEE
Confidence 34566789999999 6655544 44 555554
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.25 E-value=68 Score=29.99 Aligned_cols=113 Identities=11% Similarity=0.114 Sum_probs=66.9
Q ss_pred ccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCC----ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEE
Q 012535 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQ----SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 308 (461)
...+..+.+.+++.+++++..|.+.. ....+.. .+... ........+..+.|.+++ . ++.++.+|.+.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~ 351 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-E-AWAAGGSGILL 351 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeec-----ccCCCCcceEEEEEcCCC-c-EEEEECCCcEE
Confidence 45678899999999998887777654 3322221 11110 111123458899999886 4 55556777665
Q ss_pred EEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEE
Q 012535 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 367 (461)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vw 367 (461)
.-. ..++... .... ... .....+.+.|.++++.+++|.+|.|.-|
T Consensus 352 ~s~-D~G~tW~-~~~~--~~~----------~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGKSWK-RDKG--ADN----------IAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EeC-CCCccee-Eccc--cCC----------CCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 543 3333210 0110 010 0145889999988899999998887655
No 468
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.16 E-value=82 Score=30.87 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=23.1
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeecc
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
.+.+++.++ +|.++.+|.++ ++++-.++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~T-Ge~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKT-GEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCC-CCEeEEEeCCC
Confidence 344666666 69999999997 88887776543
No 469
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.36 E-value=1.1e+02 Score=31.56 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=48.5
Q ss_pred ccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee----eccCC-C-------CCCCCCcceEEEEEeCCCCCeEE
Q 012535 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI----VDVKP-A-------NMEDLTEVITSAEFHPTHCNMLA 299 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~----~~~~~-~-------~~~~~~~~v~~v~~~p~~~~~l~ 299 (461)
...|.+++...-+..++.. +||+|.++|..+.+..... .+... . .+. .-..+..++|||.+ ..++
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp-~~~~~~~vafSPt~-c~~v 336 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFP-CIQPPLHVAFSPTM-CSLV 336 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccc-cCCCCceEEECccc-ceEE
Confidence 3567788777777788888 9999999998876544332 10000 0 111 11244568899998 6777
Q ss_pred EEecCCeEE
Q 012535 300 YSSSKGSIR 308 (461)
Q Consensus 300 ~~~~dg~i~ 308 (461)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 778888765
No 470
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.13 E-value=53 Score=34.90 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=23.8
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
++++..++++-.||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998855
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.03 E-value=59 Score=28.22 Aligned_cols=159 Identities=11% Similarity=0.098 Sum_probs=90.6
Q ss_pred cceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC
Q 012535 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 312 (461)
.....++-.|||..-.++ ..+.|--.|..+++.... .+ +.......|...|++..++.=++. -|.-.|-
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y-------pL-g~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dp 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY-------PL-GSGASPHGIVVGPDGSAWITDTGL--AIGRLDP 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEE-------ec-CCCCCCceEEECCCCCeeEecCcc--eeEEecC
Confidence 445667788888777777 577777777776654321 11 234556788899998444432222 4555665
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCcccccccc
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (461)
++.+. ..|...... -........|.+.|.+-+++..|.-- .++.....+.++....+...
T Consensus 132 kt~ev-----t~f~lp~~~--------a~~nlet~vfD~~G~lWFt~q~G~yG--rLdPa~~~i~vfpaPqG~gp----- 191 (353)
T COG4257 132 KTLEV-----TRFPLPLEH--------ADANLETAVFDPWGNLWFTGQIGAYG--RLDPARNVISVFPAPQGGGP----- 191 (353)
T ss_pred cccce-----EEeeccccc--------CCCcccceeeCCCccEEEeeccccce--ecCcccCceeeeccCCCCCC-----
Confidence 55442 222211100 01457888999999988886421111 11111233444443333221
Q ss_pred ccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
..++..|||..-++.-.++.|-.-|..++.
T Consensus 192 ---------yGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 192 ---------YGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred ---------cceEECCCCcEEEEeccccceEEcccccCC
Confidence 278888898887776666777777776663
No 472
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=72.93 E-value=59 Score=29.66 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=29.0
Q ss_pred EecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC
Q 012535 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (461)
Q Consensus 301 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d 361 (461)
+..+|++.-||..+... +.+...- .-.+.++.|||+.+++.+.-
T Consensus 195 g~~~GRl~~YD~~tK~~-----~VLld~L------------~F~NGlaLS~d~sfvl~~Et 238 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVT-----KVLLDGL------------YFPNGLALSPDGSFVLVAET 238 (376)
T ss_pred CCCccceEEecCcccch-----hhhhhcc------------cccccccCCCCCCEEEEEee
Confidence 33467777888776542 2222221 45688999999999998753
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=72.29 E-value=70 Score=28.33 Aligned_cols=67 Identities=9% Similarity=0.104 Sum_probs=38.9
Q ss_pred cceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc--CCCEEEEec
Q 012535 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD 360 (461)
Q Consensus 283 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~g~~l~s~~ 360 (461)
.....++++++| .++++--..+.|..|+..+.-... ....+..... .-..+.++.+.+ +|.+.+.++
T Consensus 186 ~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~-~~~~l~~d~~---------~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 186 SQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPE-NFEILAQDPR---------TLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -SECEEEEETTT-EEEEEECCCTEEEEEETTTSB-GC-CEEEEEE-CC----------GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCceEEECCCC-cEEEecCCCCeEEEEeCCCCcCcc-chheeEEcCc---------eeeccceeeeccccCceEEEEEC
Confidence 355678899988 888888889999999988632111 1122211110 014678888887 666555443
No 474
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=72.25 E-value=1.3e+02 Score=31.54 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=29.7
Q ss_pred cccccceEEEEEcCCC------CEEEEeecCCcEEEEEcCCC
Q 012535 32 VQEVDIISAIEFDKSG------DHLATGDRGGRVVLFERTDT 67 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g------~~l~tg~~dg~i~iw~~~~~ 67 (461)
.+-+..|.|+++.+++ ++++.|+.|+.+++..+...
T Consensus 579 ~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~ 620 (1205)
T KOG1898|consen 579 VTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPS 620 (1205)
T ss_pred eeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCc
Confidence 3446789999999865 68999999999999998743
No 475
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.76 E-value=8.7 Score=20.39 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=18.1
Q ss_pred EEEEecCCCeEEEEecCCCCcc
Q 012535 412 RVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 412 ~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.++.++.+|.++.+|.++|+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEE
Confidence 5777888999999999888643
No 476
>PRK13684 Ycf48-like protein; Provisional
Probab=70.71 E-value=84 Score=28.58 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=41.9
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 312 (461)
..+..+.+.+++..++++.+|.+.. ... .....+... .........+.+.|..++ +.++ .+..|.|--|+-
T Consensus 260 ~~l~~v~~~~~~~~~~~G~~G~v~~-S~d-~G~tW~~~~----~~~~~~~~~~~~~~~~~~-~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 260 YGYLDLAYRTPGEIWAGGGNGTLLV-SKD-GGKTWEKDP----VGEEVPSNFYKIVFLDPE-KGFV-LGQRGVLLRYVG 330 (334)
T ss_pred cceeeEEEcCCCCEEEEcCCCeEEE-eCC-CCCCCeECC----cCCCCCcceEEEEEeCCC-ceEE-ECCCceEEEecC
Confidence 4567888999888888887776653 333 222322110 001223457788887665 4544 567787776653
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=70.15 E-value=8 Score=26.95 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=26.8
Q ss_pred EecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec
Q 012535 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (461)
Q Consensus 301 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~ 360 (461)
+..+|.+.-||..+++. ..+...- ..-+.|++++|+.+|+.+.
T Consensus 33 ~~~~GRll~ydp~t~~~-----~vl~~~L------------~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKET-----TVLLDGL------------YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEE-----EEEEEEE------------SSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeE-----EEehhCC------------CccCeEEEcCCCCEEEEEe
Confidence 34467788888888763 2222111 3578999999999888875
No 478
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=70.07 E-value=46 Score=25.29 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=44.6
Q ss_pred EEEeCCCCCeEEEEecCCeEEEEECCCcccc----cccccccccccCCCccccccccccceeEEEEcc-----CCCEEEE
Q 012535 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALC----DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-----NGRHILS 358 (461)
Q Consensus 288 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~g~~l~s 358 (461)
-.|.... ..|++++.-|.|.|++....... ...+..+.-. ..|++++-.+ +...|+.
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-------------~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-------------QEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECC-------------CceEEEEEEecCCCCCcCEEEE
Confidence 3456665 47888888999999987654321 1112222222 3566665443 3457888
Q ss_pred ecCCeEEEEEccC
Q 012535 359 RDYMTLKLWDINM 371 (461)
Q Consensus 359 ~~d~~i~vwd~~~ 371 (461)
|+...+..||+..
T Consensus 70 Gt~t~llaYDV~~ 82 (136)
T PF14781_consen 70 GTQTSLLAYDVEN 82 (136)
T ss_pred eccceEEEEEccc
Confidence 9989999999986
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.90 E-value=1.6e+02 Score=31.52 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=27.4
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCC
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTD 66 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~ 66 (461)
...-..++|+|...++|.|+.+|.|+++-...
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 34567899999999999999999999998654
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.68 E-value=72 Score=28.11 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=37.0
Q ss_pred CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe------cCCeEEEEECCCcc
Q 012535 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS------SKGSIRLIDMRQSA 316 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~------~dg~i~iwd~~~~~ 316 (461)
-..|++||..+.+-.. --.+..+.|+.+.|..+. ++++.|. ....+..||..+..
T Consensus 15 C~~lC~yd~~~~qW~~--------~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSS--------PGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECCCCEeec--------CCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCe
Confidence 3568999987443221 122356889999998665 6777764 35578889988764
No 481
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=69.33 E-value=1e+02 Score=29.01 Aligned_cols=112 Identities=10% Similarity=0.081 Sum_probs=61.1
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeC---CC--CCEEEEeCCCeEEEEEccCCCCc---
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN---SD--GETFISADDLRINLWNLEISNQS--- 267 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~--~~~l~~~~d~~i~iwd~~~~~~~--- 267 (461)
|.+++|+..|.+++|+ -...+......... ..-..+|..+... +. ...||.-.-..+.+|.+......
T Consensus 38 d~IivGS~~G~LrIy~-P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYD-PSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred cEEEEeccccEEEEEc-cCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 5679999999999998 32222111111111 2233567777643 22 23444447788888888432211
Q ss_pred ---eeeeccCCCCCCCC--CcceEEEEEeCCC----CCeEEEEecCCeEEEEECCCcc
Q 012535 268 ---FNIVDVKPANMEDL--TEVITSAEFHPTH----CNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 268 ---~~~~~~~~~~~~~~--~~~v~~v~~~p~~----~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
..+. .+..| ......++.-|-| ..++.+=+.||.+.+|+-+.-.
T Consensus 114 g~~~~L~-----~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 114 GNQYQLE-----LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred CcEEEEE-----EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 1110 01112 2223344444322 3678889999999999976643
No 482
>PHA03098 kelch-like protein; Provisional
Probab=65.92 E-value=1.4e+02 Score=29.31 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=16.9
Q ss_pred CCCEEEEecCC-----CeEEEEecCCCC
Q 012535 409 DGGRVATGSYS-----NLFRVFGCSEGS 431 (461)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iw~~~~~~ 431 (461)
++++++.||.+ +.+.+||+.+.+
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 67777777754 478888888664
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=65.69 E-value=76 Score=31.77 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=26.7
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV 148 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~ 148 (461)
..++++.-+ |.++.++.+..||.|++|++...+.
T Consensus 15 e~~~aiqsh--p~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 15 EFTTAIQSH--PGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred ceeeeeeec--CCCceEEEEecCCcEEEEeecccch
Confidence 446777777 4578999999999999999865543
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=64.08 E-value=1.2e+02 Score=28.00 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=67.1
Q ss_pred cccccCCCcEEeeeeecc-cCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc-eeeeccC
Q 012535 198 SFPPGGVSSLRLPVVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDVK 274 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~ 274 (461)
.+....+|.+..|. +.. .......+..|.+.. ...+..+........|..+ ++--|.-|+.+..... ...+..-
T Consensus 174 a~v~~k~G~~~Qy~-L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~ 250 (381)
T PF02333_consen 174 AFVNGKDGRVEQYE-LTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA 250 (381)
T ss_dssp EEEEETTSEEEEEE-EEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB
T ss_pred EEEecCCceEEEEE-EEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc
Confidence 57788889999998 543 333445566666632 2467888888888888889 7877777777633221 1121110
Q ss_pred CCCCCCCCcceEEEEEe--CCCC-CeEEEEecCCeEEEEECCCc
Q 012535 275 PANMEDLTEVITSAEFH--PTHC-NMLAYSSSKGSIRLIDMRQS 315 (461)
Q Consensus 275 ~~~~~~~~~~v~~v~~~--p~~~-~~l~~~~~dg~i~iwd~~~~ 315 (461)
.-......|..++.- +++. .+|++.-.+++..+||.+..
T Consensus 251 --~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 251 --DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp --SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred --cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 112244567777664 3332 35555556889999998753
No 485
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=63.37 E-value=30 Score=21.52 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCEEEEeec-----CCcEEEEEcCC
Q 012535 37 IISAIEFDKSGDHLATGDR-----GGRVVLFERTD 66 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~-----dg~i~iw~~~~ 66 (461)
.+.+++..|||++|+.|.. +....|..+..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~ 36 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNA 36 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECC
Confidence 4678999999999999963 33455666543
No 486
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=60.55 E-value=40 Score=28.83 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=36.3
Q ss_pred ceeEEEEccCCCEEEEecC----CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 343 SISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
.+.+-.+-+||++|.+|++ ..+++++... ............. +....-. -+...-+||+.|+.|+.
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~-~~~~~~w~e~~~~------m~~~RWY---pT~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT-SDGTCDWTESPND------MQSGRWY---PTATTLPDGRVLIVGGS 137 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCccccceEEEecCC-CCCCCCceECccc------ccCCCcc---ccceECCCCCEEEEeCc
Confidence 3445567789999999753 5688887542 0111111110000 0000000 15566789999998887
Q ss_pred CC
Q 012535 419 SN 420 (461)
Q Consensus 419 dg 420 (461)
+.
T Consensus 138 ~~ 139 (243)
T PF07250_consen 138 NN 139 (243)
T ss_pred CC
Confidence 63
No 487
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=59.76 E-value=18 Score=20.38 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCeEEEEecCC
Q 012535 409 DGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~ 429 (461)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788889999999999763
No 488
>PHA02790 Kelch-like protein; Provisional
Probab=59.71 E-value=1.7e+02 Score=28.27 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=16.2
Q ss_pred CCcEEEEEeCC--CeEEEEEccCCceeE
Q 012535 125 NSALYLLSTND--KTIKLWKVQEKKVKK 150 (461)
Q Consensus 125 ~~~~l~~~~~d--~~i~vw~~~~~~~~~ 150 (461)
++...++|+.+ .++..|+..+++...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 36677777653 457778876665443
No 489
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=59.12 E-value=22 Score=19.86 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=17.4
Q ss_pred EEEEecCCCeEEEEecCCCCcc
Q 012535 412 RVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 412 ~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.+..++.||.|+-.|.++|+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEE
T ss_pred EEEEeCCCCEEEEEECCCCCEE
Confidence 3555688999999999999754
No 490
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=57.90 E-value=52 Score=29.34 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=49.3
Q ss_pred eeEEEEccCCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeE
Q 012535 344 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (461)
Q Consensus 344 v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (461)
+++|...++|.+|+|+-. ..|.+.|-++ ++.+-.+.+....--.+ . -...+|-.|-+++-.+..++.|
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~df~~-----~-----~~~f~~QHdar~~~~~~~~~~I 214 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSDFTL-----P-----ATNFSWQHDARFLNESNDDGTI 214 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCcccc-----c-----CCcEeeccCCEEeccCCCCCEE
Confidence 677788889999999865 8999999875 77777775552210000 0 0135555566666666778888
Q ss_pred EEEecC
Q 012535 423 RVFGCS 428 (461)
Q Consensus 423 ~iw~~~ 428 (461)
.|||-.
T Consensus 215 slFDN~ 220 (299)
T PF14269_consen 215 SLFDNA 220 (299)
T ss_pred EEEcCC
Confidence 888873
No 491
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=57.21 E-value=44 Score=23.35 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=26.3
Q ss_pred ccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe
Q 012535 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (461)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (461)
+.+..+|.+..|| ..+.........+ ...+.|++++++..++.+
T Consensus 31 le~~~~GRll~yd----p~t~~~~vl~~~L-----~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 31 LEGRPTGRLLRYD----PSTKETTVLLDGL-----YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHT---EEEEEEE----TTTTEEEEEEEEE-----SSEEEEEE-TTSSEEEEE
T ss_pred ecCCCCcCEEEEE----CCCCeEEEehhCC-----CccCeEEEcCCCCEEEEE
Confidence 5567788888888 3333222222222 567889999999998887
No 492
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=55.02 E-value=23 Score=33.40 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=44.0
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEcc
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLE 262 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~ 262 (461)
.-++++++..|.|++|| - - ....++.+.+-...|..|..+.+|.++++.....+.+-|++
T Consensus 573 sGyIa~as~kGDirLyD-R---i----g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYD-R---I----GKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeeh-h---h----cchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 35679999999999999 1 1 11112223566678889999999999887766778888876
No 493
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=54.74 E-value=33 Score=23.77 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEee-cCCcEEEEEcCCC
Q 012535 39 SAIEFDKSGDHLATGD-RGGRVVLFERTDT 67 (461)
Q Consensus 39 ~~~~~s~~g~~l~tg~-~dg~i~iw~~~~~ 67 (461)
+.+.++|++++|.+++ ..+.|.+|+....
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecCC
No 494
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.24 E-value=1.6e+02 Score=25.71 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=79.9
Q ss_pred ccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEE
Q 012535 231 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (461)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw 310 (461)
+.......|...|++..-++-...-|.-.|.++.+ ++.+.+ ..+..........|.+.| ++-.++.. |.---.
T Consensus 101 g~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~e--vt~f~l---p~~~a~~nlet~vfD~~G-~lWFt~q~-G~yGrL 173 (353)
T COG4257 101 GSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLE--VTRFPL---PLEHADANLETAVFDPWG-NLWFTGQI-GAYGRL 173 (353)
T ss_pred CCCCCCceEEECCCCCeeEecCcceeEEecCcccc--eEEeec---ccccCCCcccceeeCCCc-cEEEeecc-ccceec
Confidence 44455666777788765554321134444443322 221111 123345667889999998 76666542 211111
Q ss_pred ECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccc
Q 012535 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (461)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 389 (461)
|..+.. +.++..... ..-+.++..|||..-++.- ++.|-.-|... + .-..+..........
T Consensus 174 dPa~~~-----i~vfpaPqG-----------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~~~~~gs 235 (353)
T COG4257 174 DPARNV-----ISVFPAPQG-----------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPNALKAGS 235 (353)
T ss_pred CcccCc-----eeeeccCCC-----------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCCcccccc
Confidence 111111 233332221 3467788999998777743 34555555443 2 112222111100000
Q ss_pred cccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
..+--+|.|+.-++....+.++-||....
T Consensus 236 ------------Rriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 236 ------------RRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred ------------cccccCccCcEEEeccCCceeeEeCcccc
Confidence 13444566777776666677777766654
No 495
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=51.84 E-value=1.1e+02 Score=31.26 Aligned_cols=166 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--------CCEEEEe--CCCeEEEEEccCCCCc
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--------GETFISA--DDLRINLWNLEISNQS 267 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--------~~~l~~~--~d~~i~iwd~~~~~~~ 267 (461)
+..++.++.+.++. .......++...+...-...+.++.+++. |..-+.+ -++. ||.+ ....
T Consensus 550 ic~gtq~ssisiss----ss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gS---wd~e-p~~~ 621 (925)
T KOG3522|consen 550 ICLGTQTSSISISS----SSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGS---WDGE-PNIS 621 (925)
T ss_pred ccccCccceeEEee----ccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCC---CCCC-Cccc
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
... ...++.+.++..+ ++.++.+|.|.++...+...........+.. ..|+++
T Consensus 622 ~~~----------g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leahqee~-------------~~Vthm 674 (925)
T KOG3522|consen 622 IPT----------GSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEA-------------HSVTHM 674 (925)
T ss_pred ccc----------CCccccchhhhhc----eeeeecCCceEEEechhccccchhHHHHhhc-------------ceEEEE
Q ss_pred EEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec
Q 012535 348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (461)
Q Consensus 348 ~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (461)
.....|-+++-++...+++++..+ -.-.+.+..... ...-+|.++++-.++
T Consensus 675 ~~~~~gVwvafasG~~~rlfhtet-l~hlqd~niaT~------------------vt~~lP~~kllsv~~ 725 (925)
T KOG3522|consen 675 LYLDNGVWVAFASGDEERLFHTET-LWHLQDSNIATS------------------VTVDLPFGKLLSVPG 725 (925)
T ss_pred EeeCCceEEEEcCCCEEEEecccc-cCCccccccCcc------------------eeecCCCcccccCCC
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=51.77 E-value=2.8e+02 Score=28.38 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=42.5
Q ss_pred ceEEEEEeCCCCCeEEEEecCC-----eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEE
Q 012535 284 VITSAEFHPTHCNMLAYSSSKG-----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 284 ~v~~v~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
.-..+.|-|+| ..+++-..|| .|+++.-+.-+. ..+... .+-...+..++|+-....++.
T Consensus 248 ~e~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrH-----Gef~lr---------~~~dEk~~~~~wn~~s~vlav 312 (1243)
T COG5290 248 MEHQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRH-----GEFDLR---------VGCDEKAFLENWNLLSTVLAV 312 (1243)
T ss_pred chhccccccCC-ceeeeeccCCCCCcceEEEEccCCccc-----CCcccc---------CCchhhhhhhhhhHHHHHHHH
Confidence 33468899999 7888876655 344544322110 011000 000134666778766666666
Q ss_pred ecCCeEEEEEccC
Q 012535 359 RDYMTLKLWDINM 371 (461)
Q Consensus 359 ~~d~~i~vwd~~~ 371 (461)
+..+.+++|-..+
T Consensus 313 ~~~n~~~lwttkN 325 (1243)
T COG5290 313 AEGNLLKLWTTKN 325 (1243)
T ss_pred hhcceEEEEEccc
Confidence 6678999998764
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=50.23 E-value=3.4e+02 Score=28.84 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=68.0
Q ss_pred EEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEE
Q 012535 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKL 366 (461)
Q Consensus 288 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~v 366 (461)
.+..|.. ..++ ++....+++||+-..++.. ..+.... ...|+.+.+. +..++.|+- -.+.+
T Consensus 939 ~Ai~~f~-~~~L-agvG~~l~~YdlG~K~lLR----k~e~k~~----------p~~Is~iqt~--~~RI~VgD~qeSV~~ 1000 (1205)
T KOG1898|consen 939 GAICPFQ-GRVL-AGVGRFLRLYDLGKKKLLR----KCELKFI----------PNRISSIQTY--GARIVVGDIQESVHF 1000 (1205)
T ss_pred eEEeccC-CEEE-EecccEEEEeeCChHHHHh----hhhhccC----------ceEEEEEeec--ceEEEEeeccceEEE
Confidence 4566766 4444 3566789999998877632 2222111 1567777774 668888873 56666
Q ss_pred EEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 367 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+..+..++.+..+-...-... ......-|...+|.+..=|.+.+-.+...
T Consensus 1001 ~~y~~~~n~l~~fadD~~pR~--------------Vt~~~~lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1001 VRYRREDNQLIVFADDPVPRH--------------VTALELLDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EEEecCCCeEEEEeCCCccce--------------eeEEEEecCCceeeccccCcEEEEECCCc
Confidence 655544566666644332211 13444457777888888888888887654
No 498
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=49.25 E-value=1.9e+02 Score=26.95 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=29.5
Q ss_pred ceeeeccccccCCcccccccccceEEEEEcCCC-----CEEEEeecCCcEEEEEcCCCC
Q 012535 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSG-----DHLATGDRGGRVVLFERTDTR 68 (461)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-----~~l~tg~~dg~i~iw~~~~~~ 68 (461)
+.|++... .-.|...|.+++.+-++ +.+..-+..+.|-+|+..+.+
T Consensus 206 l~W~~q~~--------~~~~~~~v~s~~~s~~~~F~i~~~l~~~s~~~~Igvw~~~t~q 256 (465)
T KOG2714|consen 206 LLWKIQEE--------GSNTVKGVFSLAVSVDPLFFIGTQLVALSSVGKIGVWHAVTQQ 256 (465)
T ss_pred eeEeeccC--------CCcceEEEEeecccccchhhhhhhhhhccccccccccchhhhc
Confidence 88988752 22355667777665543 334444567889999987763
No 499
>PHA02790 Kelch-like protein; Provisional
Probab=49.10 E-value=2.6e+02 Score=27.09 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=16.7
Q ss_pred cCCCEEEEecCC-----CeEEEEecCCCC
Q 012535 408 GDGGRVATGSYS-----NLFRVFGCSEGS 431 (461)
Q Consensus 408 ~~~~~l~s~~~d-----g~i~iw~~~~~~ 431 (461)
-+++..+.||.+ ..+..||..+++
T Consensus 445 ~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 445 VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 367788888754 357788877654
No 500
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=48.99 E-value=2.4e+02 Score=26.68 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=25.3
Q ss_pred cceEEEEEeCCCCCeEEEEecCCeEEEEECCC
Q 012535 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (461)
Q Consensus 283 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (461)
..|.+++..+.. +++++...+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 348999999987 8999999999999999975
Done!